BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044256
         (363 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/428 (41%), Positives = 241/428 (56%), Gaps = 67/428 (15%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +KV   L   G  +RR + P N VTF SL+KG C+   I +A+ L++KM   G RPNV T
Sbjct: 141 NKVDFGLAVLGEMLRRGHSP-NTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVT 199

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             TL+ GL  TGN  L +KLH+EM+NG G FG   KPN+ CY ++ID LCKD L+D+ K+
Sbjct: 200 YGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKE 259

Query: 122 LFMEMKDKGINANTL-------------------------------------------LC 138
           LF+EMK +GI+ + +                                           LC
Sbjct: 260 LFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALC 319

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  K+ EAN LL+LM+QRG +P  FTY  L++G+CL G+++ A  LF SM  KG   D  
Sbjct: 320 KAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAV 379

Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEM 235
           SY+VLINGYCK+  + EA  + REM              +L G  +         +F EM
Sbjct: 380 SYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEM 439

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           K+ ++ PE+ T NI +DGLCKN H+ E MELF  LE  + +  ++IFN LI G CK    
Sbjct: 440 KVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKI 499

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           EIA ELFN+LS + L  +V+ Y ++IH L K GQ++    L L MEE GCA ++ TFNTL
Sbjct: 500 EIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTL 559

Query: 356 MISFLQKE 363
           M  F Q +
Sbjct: 560 MRGFCQND 567



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 121/253 (47%), Gaps = 26/253 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N LI G+C  G + +A +L ++M      P V T +TL+TGL R G +     L  E
Sbjct: 379 VSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGE 438

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M   + D      P    Y  L+DGLCK+  + +  +LF  +++     +          
Sbjct: 439 M--KVHDL----TPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDG 492

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+  A  L   +   GL P + TYT +++G C  G++  A  LF  M  KG  P+
Sbjct: 493 LCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPN 552

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +++ L+ G+C+N  +++ + + +EM    F             P+  T +I +D L K
Sbjct: 553 LVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFS------------PDASTISIVVDLLSK 600

Query: 257 NGHVLEVMELFPT 269
           +    E + L PT
Sbjct: 601 DEKYREYLHLLPT 613



 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+  +I G C  G + +A  L   M   GC PN+ T +TL+ G  +   M   ++L 
Sbjct: 517 NVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELL 576

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR 114
           QEM     DF     P+      ++D L KD 
Sbjct: 577 QEMAE--KDF----SPDASTISIVVDLLSKDE 602


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 174/391 (44%), Positives = 228/391 (58%), Gaps = 32/391 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++V   L A    +RR Y P + VT+ SLIKG CME  I +A++L  +M   GC PNV T
Sbjct: 140 NRVREGLSAMAGIMRRGYIP-DVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVT 198

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             TLI GL RTGN+NL LKLHQEM+NG   +    KPN+F Y  +ID LCK     + K 
Sbjct: 199 YGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKR 258

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF EM D+G+  + +        LCK+  ++EA + LE MM RG+ P +FT+T L+ G+C
Sbjct: 259 LFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFC 318

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---------- 223
           LVG ++ A  LF SM  KG+ PDV SY+VLI GYCK FNVEEAM +  EM          
Sbjct: 319 LVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMK 378

Query: 224 ----ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
               +L G          KK+F  +K   V    + C++F+DGLCKNG + E MELF  L
Sbjct: 379 TFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNEL 438

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           +  N +L +E FN LI G CK    E A ELF KLS + L  DVV Y I+I+   K GQ+
Sbjct: 439 KSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQV 498

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
              N L   MEENGC  ++ T++ L+  F +
Sbjct: 499 DNANILFQMMEENGCTPNLLTYSALLHGFYK 529



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 132/296 (44%), Gaps = 39/296 (13%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TL------LCKKTKLVEANRLL 150
           ++  +  L+  L K +   Q   L+ +M   G++ N  TL      LC   ++ E    +
Sbjct: 90  SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAM 149

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             +M+RG  P + TYT L+ G C+  +++ A  LF  M + G  P+V +Y  LI G C+ 
Sbjct: 150 AGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRT 209

Query: 211 FNVEEAMNVSREMILNG------------------------------FKKIFNEMKLCNV 240
            N+  A+ + +EM LNG                               K++FNEM    V
Sbjct: 210 GNINLALKLHQEM-LNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGV 268

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T +  ID LCK G V+E  +   T+ +      +  F SLI G C  G  + A E
Sbjct: 269 RPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKE 328

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           LF  +  K    DV++Y +LI+   K   +++   L   M   G   D+ TF  L+
Sbjct: 329 LFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLL 384



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 116/236 (49%), Gaps = 37/236 (15%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF SLI+GFC+ G++  A +L   M + G  P+V +   LI G  +T N+   +KL+ EM
Sbjct: 309 TFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEM 368

Query: 86  VN---------------------GMGD---FGGIYKP-----NVFCYGSLIDGLCKDRLV 116
           +                       +GD     G+ KP     N++     +DGLCK+  +
Sbjct: 369 LRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCL 428

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            +  +LF E+K   +  +          LCK  KL  A  L E + Q GL P + TY  +
Sbjct: 429 FEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIM 488

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           +NG+C  G+V+ A  LF  M   G  P++ +YS L++G+ KN  +EE + +  +MI
Sbjct: 489 INGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMI 544



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 14/202 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF  L+KG  + G + DA +L   +       N+  C   + GL + G +   ++L  E+
Sbjct: 379 TFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNEL 438

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            +         K ++  +  LIDGLCK R ++   +LF ++  +G+  + +         
Sbjct: 439 KSYN------MKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGF 492

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++  AN L ++M + G  P + TY+ LL+G+    K+   + L   M +K      
Sbjct: 493 CKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAA 552

Query: 198 FSYSVLINGYCKNFNVEEAMNV 219
             Y+++ +   K+    E +++
Sbjct: 553 SIYTIVEDMVSKDEKCREWLDI 574


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 171/393 (43%), Positives = 226/393 (57%), Gaps = 42/393 (10%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           AF   +RR Y P N VT+N+LIKG CME  I +A++L  +M   GC P+V T  TLI GL
Sbjct: 126 AFAGILRRGYSP-NIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGL 184

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
             TGN+N+ LKLHQEM+N +  +    KPNV  Y  ++DGLCK    D+ K LF EMK +
Sbjct: 185 CGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQ 244

Query: 130 GINANTLL------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
           G+  N +L                  CK+ K++EA +LL +M++ G+ P + TY  L+ G
Sbjct: 245 GMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEG 304

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG---- 227
           +C+VG +N A  LF SM  KG  PDV SY+VLINGY K   VEEAM +  EM+L G    
Sbjct: 305 FCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPN 364

Query: 228 -------------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
                               KK+F+ MK   +   ++T  IF+DGLCKN  + E M+LF 
Sbjct: 365 VITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFT 424

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            L+ SN +L +E  N LI G CK G  E A ELF KLS +    +VV Y I+IH   +EG
Sbjct: 425 ELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREG 484

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           Q+ K N L+  ME NGC  D+ T+NTLM  F +
Sbjct: 485 QVDKANVLIQKMEANGCTPDIITYNTLMRGFYE 517



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 139/308 (45%), Gaps = 50/308 (16%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV+ A    G  I     P + VT+NSLI+GFCM G++  A +L   M + GC P+V + 
Sbjct: 275 KVIEAKKLLGVMIESGIVP-DLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 333

Query: 63  DTLITGLRRTGNMNLTLKLHQEM------------------------VNGMGDFGGIYKP 98
           + LI G  +T  +   +KL+ EM                        V+       + K 
Sbjct: 334 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA 393

Query: 99  -----NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL---LCKKTKLVE 145
                N + YG  +DGLCK+  + +   LF E+K         N N L   LCK  KL  
Sbjct: 394 HGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLET 453

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  L E +   G  P + TYT +++G+C  G+V+ A  L   M   G  PD+ +Y+ L+ 
Sbjct: 454 AWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMR 513

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G+ ++  +EE +            ++ + M   +V P+  TC+I +D L K+    E + 
Sbjct: 514 GFYESNKLEEVV------------QLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLH 561

Query: 266 LFPTLEIS 273
           L P   I 
Sbjct: 562 LLPRFPIQ 569



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 151/335 (45%), Gaps = 55/335 (16%)

Query: 71  RTGNMNLTLKLH--QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           +TGN+  T  LH    M+           P++  +  L+ GL K +   Q   L+ +M+ 
Sbjct: 44  KTGNVTATHALHFFHLMMRSTP------TPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRL 97

Query: 129 KGINAN--TL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
            G++++  TL      LC   +L E       +++RG +P I TY  L+ G C+  +++ 
Sbjct: 98  SGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISE 157

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM----------------- 223
           A  LF  M + G  PDV +Y  LI G C   N+  A+ + +EM                 
Sbjct: 158 ATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVIT 217

Query: 224 ---ILNGF---------KKIFNEMKLCNVV----------PETFTCNIFIDGLCKNGHVL 261
              I++G          K++F EMK   ++          P+  T N+ ID LCK G V+
Sbjct: 218 YNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVI 277

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           E  +L   +  S     +  +NSLI G C  G    A ELF  +  K    DV++YN+LI
Sbjct: 278 EAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLI 337

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +   K  ++++   L   M   G   +V T+++L+
Sbjct: 338 NGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLL 372


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/386 (42%), Positives = 224/386 (58%), Gaps = 32/386 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
            L A    +RR Y P + VTF +LIKG C+E  I +A++L  +M   GC PNV T  TLI
Sbjct: 145 GLAAMAGIMRRGYIP-DVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLI 203

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   GN+N+ LK HQEM+N    +    +PNV  Y  +IDGLCK    ++   LF EM
Sbjct: 204 KGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEM 263

Query: 127 KDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            D+G+  N         +LCK+ ++++A +LLE+M+Q G+ P +FTYT L+ G+CLVG +
Sbjct: 264 VDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDL 323

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---------- 228
           N A  LF SM  KG+ PDV SY++LINGYCK   VEEAM +  EM+  G           
Sbjct: 324 NSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVL 383

Query: 229 -------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                        K++F  +K   +  +   C IF+DGLCKNG++ E M+LF  LE  N 
Sbjct: 384 LKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNM 443

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           +L +E F  LI G CK G  E A ELF KL  + +  D +AY+ +IH   K+GQ+ K N 
Sbjct: 444 KLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANI 503

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQ 361
           L   MEENGC+ D+ T++ LM  F +
Sbjct: 504 LFQKMEENGCSPDLITYSILMRGFYE 529



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 144/331 (43%), Gaps = 62/331 (18%)

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           +TG++++T + HQ        F  +   ++F +  L+ GL K     Q   L+ +M   G
Sbjct: 71  KTGSISVT-QAHQ--------FFDLMMRSIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAG 121

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           +  + L        LC   ++ E    +  +M+RG  P + T+T L+ G C+  ++  A 
Sbjct: 122 LWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEAT 181

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------------------- 223
            LF  M + G  P+V +Y  LI G C   N+  A+   +EM                   
Sbjct: 182 KLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYS 241

Query: 224 -ILNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
            I++G  K+         FNEM    V P   T ++ ID LCK G V++  +L       
Sbjct: 242 IIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLL------ 295

Query: 274 NCELFVEI--------FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
             E+ ++I        + SLI+G C  G    A ELF  +  K    DV++YN+LI+   
Sbjct: 296 --EMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYC 353

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K  ++++   L   M   G   DV T   L+
Sbjct: 354 KTLKVEEAMKLFNEMLHVGMWPDVKTSGVLL 384



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 126/282 (44%), Gaps = 49/282 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+ SLIKGFC+ G++  A +L   M + G  P+V + + LI G  +T  +   +KL 
Sbjct: 306 NLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLF 365

Query: 83  QEMVN-GMGD---FGGIYKPNVFCYGSL-------------------------IDGLCKD 113
            EM++ GM       G+    +F  G +                         +DGLCK+
Sbjct: 366 NEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKN 425

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             + +   LF E++   +  +          LCK  KL  A  L E + + G+ P    Y
Sbjct: 426 GYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAY 485

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           + +++G+C  G+V+ A  LF  M   G  PD+ +YS+L+ G+ ++  +E+ + +   MI 
Sbjct: 486 SSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIE 545

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
                        +V P+     I  D +CK+    E ++L 
Sbjct: 546 K------------DVWPDDGIYAIVEDMVCKDEKYKEWLDLL 575



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 113/246 (45%), Gaps = 38/246 (15%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F S   + Y P + +++N LI G+C    + +A +L  +M   G  P+V T   L+  L 
Sbjct: 330 FVSMPSKGYEP-DVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALF 388

Query: 71  RTGNMNLTLKLHQEM---------------VNGMGDFGGIY--------------KPNVF 101
             G ++   +L + +               ++G+   G I+              K ++ 
Sbjct: 389 LAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIE 448

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
            +G LIDGLCK   ++   +LF ++ ++GI  + +         CKK ++ +AN L + M
Sbjct: 449 TFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKM 508

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
            + G +P + TY+ L+ G+    K+   + L   M  K   PD   Y+++ +  CK+   
Sbjct: 509 EENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKY 568

Query: 214 EEAMNV 219
           +E +++
Sbjct: 569 KEWLDL 574


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 173/418 (41%), Positives = 228/418 (54%), Gaps = 67/418 (16%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           AF   +RR Y P N VT+N+LIKG CME  I +A++L  +M   GC P+V T  TLI GL
Sbjct: 126 AFAGILRRGYSP-NIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGL 184

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
             TGN+N+ LKLHQEM+N +  +    KPNV  Y  ++DGLCK    D+ K LF EMK +
Sbjct: 185 CGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQ 244

Query: 130 G-----INANTL--------------------------------------LCKKTKLVEA 146
           G     I+ N+L                                      LCK+ K++EA
Sbjct: 245 GMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEA 304

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
            +LL +M++ G+ P + TY  L+ G+C+VG +N A  LF SM  KG  PDV SY+VLING
Sbjct: 305 KKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLING 364

Query: 207 YCKNFNVEEAMNVSREMILNG-----------------------FKKIFNEMKLCNVVPE 243
           Y K   VEEAM +  EM+L G                        KK+F+ MK   +   
Sbjct: 365 YSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAEN 424

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
           ++T  IF+DGLCKN  + E M+LF  L+ SN +L +E  N LI G CK G  E A ELF 
Sbjct: 425 SYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFE 484

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           KLS +    +VV Y I+IH   +EGQ+ K N L+  ME NGC  D+ T+NTLM  F +
Sbjct: 485 KLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYE 542



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 148/299 (49%), Gaps = 22/299 (7%)

Query: 71  RTGNMNLTLKLH--QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           +TGN+  T  LH    M+           P++  +  L+ GL K +   Q   L+ +M+ 
Sbjct: 44  KTGNVTATHALHFFHLMMRSTP------TPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRL 97

Query: 129 KGINAN--TL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
            G++++  TL      LC   +L E       +++RG +P I TY  L+ G C+  +++ 
Sbjct: 98  SGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISE 157

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A  LF  M + G  PDV +Y  LI G C   N+  A+ + +EM LN   +        N 
Sbjct: 158 ATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEM-LNDISRY-----EINC 211

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P   T NI +DGLCK G   E  +LF  ++       +  +NSLI G C  G +E +  
Sbjct: 212 KPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKR 271

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L +++  + L  D+V +N+LI  L KEG++ +   LL  M E+G   D+ T+N+L+  F
Sbjct: 272 LLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGF 330



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 139/308 (45%), Gaps = 50/308 (16%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV+ A    G  I     P + VT+NSLI+GFCM G++  A +L   M + GC P+V + 
Sbjct: 300 KVIEAKKLLGVMIESGIVP-DLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 358

Query: 63  DTLITGLRRTGNMNLTLKLHQEM------------------------VNGMGDFGGIYKP 98
           + LI G  +T  +   +KL+ EM                        V+       + K 
Sbjct: 359 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA 418

Query: 99  -----NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL---LCKKTKLVE 145
                N + YG  +DGLCK+  + +   LF E+K         N N L   LCK  KL  
Sbjct: 419 HGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLET 478

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  L E +   G  P + TYT +++G+C  G+V+ A  L   M   G  PD+ +Y+ L+ 
Sbjct: 479 AWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMR 538

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G+ ++  +EE +            ++ + M   +V P+  TC+I +D L K+    E + 
Sbjct: 539 GFYESNKLEEVV------------QLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLH 586

Query: 266 LFPTLEIS 273
           L P   I 
Sbjct: 587 LLPRFPIQ 594



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A   F       + P N VT+  +I GFC EG +  A+ L++KM   GC P++ T 
Sbjct: 475 KLETAWELFEKLSNEGHEP-NVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITY 533

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G   +  +   ++L   M            P+      ++D L KD    +   L
Sbjct: 534 NTLMRGFYESNKLEEVVQLLHRMAQ------KDVSPDAITCSIVVDMLSKDEKYQECLHL 587

Query: 123 FMEMK-DKGINANTLL 137
                  KG++ + L+
Sbjct: 588 LPRFPIQKGVDKHLLM 603


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 175/424 (41%), Positives = 228/424 (53%), Gaps = 67/424 (15%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++V  AL A    +RR Y P N VT+ +LIKG CME  I +A++L  +M   GC PN  T
Sbjct: 140 NRVSEALAAMAGILRRGYIP-NVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVT 198

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             TLI GL +TGN+N+ LKLH+EM+N    +G   KP V  Y  +IDGLCK    D+ K+
Sbjct: 199 YGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKE 258

Query: 122 LFMEMKDKG-----INANTL--------------------------------------LC 138
           LF EMK +G     I+ +TL                                      LC
Sbjct: 259 LFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLC 318

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K+ K+ EA +LLE+M+QRG+ P + TY  L++G+C+VG +N A  LF SM  KG  PD  
Sbjct: 319 KEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEI 378

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKKIFNEM 235
           SY+ LINGYCK + V+EAMN+  EM+  G                        KK+F  M
Sbjct: 379 SYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVM 438

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           K   V   +    IF+DGLCKN  + E MELF  L+  N +L +E ++ LI G CK G  
Sbjct: 439 KTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKL 498

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           E A ELF KLS + L  DVV YNI+IH   K GQ+   N L   MEENGC  D+  +NTL
Sbjct: 499 ETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTL 558

Query: 356 MISF 359
           +  F
Sbjct: 559 LCGF 562



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 141/314 (44%), Gaps = 62/314 (19%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A       I+R   P N +T+NSLI GFCM G++  A +L   M + G  P+  + 
Sbjct: 322 KVTEAKKLLEVMIQRGIVP-NLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISY 380

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            TLI G  +T  +   + L+ EM+  +G       PNV  YG+L+ GL +   V   K L
Sbjct: 381 TTLINGYCKTWKVKEAMNLYNEMLQ-VGK-----SPNVTTYGTLLKGLFQKGKVGDAKKL 434

Query: 123 FMEMKDKGINANTL-------------------------------------------LCK 139
           F  MK  G++AN+                                            LCK
Sbjct: 435 FGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCK 494

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             KL  A  L E + Q GL P + TY  +++G+C VG+V+ A  LF+ M   G  PD+ +
Sbjct: 495 AGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIA 554

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+ L+ G+C+   +EE +            K+ ++M   +V P   +C I +D LCK+  
Sbjct: 555 YNTLLCGFCEGNKLEEVI------------KLLHKMVQKDVSPNAASCTIVVDMLCKDEK 602

Query: 260 VLEVMELFPTLEIS 273
             + ++L P   + 
Sbjct: 603 YKKFVDLLPKFPVQ 616



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 136/270 (50%), Gaps = 14/270 (5%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P +  +  L+ GL K     Q   L+ EM+  G++ +          LC   ++ EA   
Sbjct: 89  PPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAA 148

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           +  +++RG  P + TYT L+ G C+  +++ A  LF  M + G  P+  +Y  LI G C+
Sbjct: 149 MAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQ 208

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
             NV  A+ + +EM+ +  +   N    C   P   T +I IDGLCK G   E  ELF  
Sbjct: 209 TGNVNIALKLHKEMLNDASQYGVN----CK--PGVITYSIIIDGLCKVGREDEAKELFEE 262

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           ++       V  +++LI G C  G ++ +  LF+++  + +  D+V +++LI  L KEG+
Sbjct: 263 MKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGK 322

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + +   LL  M + G   ++ T+N+L+  F
Sbjct: 323 VTEAKKLLEVMIQRGIVPNLITYNSLIDGF 352



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 29/242 (11%)

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           ++A    +LMM+    P I ++  LL G   +   +   +L++ M   G  PD+F+ S+L
Sbjct: 73  IQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSIL 132

Query: 204 INGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLCNV 240
            N  C    V EA+     ++  G+                        ++F  M+    
Sbjct: 133 ANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGC 192

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTL--EIS----NCELFVEIFNSLIRGCCKFGI 294
            P   T    I GLC+ G+V   ++L   +  + S    NC+  V  ++ +I G CK G 
Sbjct: 193 TPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGR 252

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A ELF ++  + ++ DV++Y+ LIH     G+  +  +L   M + G   D+ TF+ 
Sbjct: 253 EDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSV 312

Query: 355 LM 356
           L+
Sbjct: 313 LI 314



 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 55/194 (28%)

Query: 173 CLVGKVNV--AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
           C  G +    A   FD M R   +P + S++ L+ G  K               +N + +
Sbjct: 65  CKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAK---------------INHYSQ 109

Query: 231 IF---NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
           +F   NEM+L  + P+ FT +I  + LC    V E +     +              L R
Sbjct: 110 LFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGI--------------LRR 155

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G                      + +VV Y  LI  L  E +I +   L L M++ GC  
Sbjct: 156 G---------------------YIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTP 194

Query: 348 DVDTFNTLMISFLQ 361
           +  T+ TL+    Q
Sbjct: 195 NAVTYGTLIKGLCQ 208


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 171/420 (40%), Positives = 226/420 (53%), Gaps = 59/420 (14%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++V   L      +RR Y P + VT+ +LIKG CME  I  A+ L  +M   GC PN  T
Sbjct: 145 NRVGEGLAVMAGILRRGYIP-DIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAIT 203

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             TL+ GL RTGN+++ LKLHQEM+N    +G  +KP V  Y  +ID LCKDR  D+ +D
Sbjct: 204 YGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARD 263

Query: 122 LFMEMK---------------------------DKGINANTL--------LCKKTKLVEA 146
           LF EMK                           ++G+  N +        LCK+ K++EA
Sbjct: 264 LFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEA 323

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             LLE+M+QRG+ P + TY  L+ G+CLVG +N A  LF SM  KG  PDV  Y+VLING
Sbjct: 324 KDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLING 383

Query: 207 YCKNFNVEEAMNVSREMILNG-----------------------FKKIFNEMKLCNVVPE 243
           YCK   VEEAM +   M+  G                        KK+F  MK+  +  +
Sbjct: 384 YCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGD 443

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
            +   IF++GLCKNG + E MELF  L+  N +L +E FN LI G CK G  E A ELF 
Sbjct: 444 LYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFE 503

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           KL  + L  DVV YNI+IH   + GQ+ K N L   ME+NGC  D  T+ TL+  F + +
Sbjct: 504 KLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESK 563



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 137/328 (41%), Gaps = 64/328 (19%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TL------LCKKTKLVEANRL 149
           P +  +  L+ GL K +   Q   L+ +M+  GI+ +  TL      LC   ++ E   +
Sbjct: 94  PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAV 153

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG----------------- 192
           +  +++RG  P I TYT L+ G C+  +++ A  LF  M + G                 
Sbjct: 154 MAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCR 213

Query: 193 ------------------------FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
                                   F P V SYS++I+  CK+   +EA ++  EM + G 
Sbjct: 214 TGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGM 273

Query: 229 ---------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
                          K++FNEM    V P   T N+ ID LCK G V+E  +L   +   
Sbjct: 274 TPTVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQR 333

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
                +  +NSLI G C  G    A ELF  +  K    DV+ Y +LI+   K  ++++ 
Sbjct: 334 GIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEA 393

Query: 334 NYLLLSMEENGCALDVDTFNTLMISFLQ 361
             L   M + G   DV T+  L+    Q
Sbjct: 394 MKLYNGMLQVGKRPDVKTYGALLTGLFQ 421



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 18/219 (8%)

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           ++A +   LMM     P + ++T LL+G   +   +    L++ M   G  PD  + ++L
Sbjct: 78  IQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNIL 137

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           +N  C    V E + V   ++  G+            +P+  T    I GLC    + + 
Sbjct: 138 LNCLCNVNRVGEGLAVMAGILRRGY------------IPDIVTYTTLIKGLCMEHRISKA 185

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA----SELFNKLSCK--NLVADVVAY 317
             LF  ++   C      + +L++G C+ G   IA     E+ N  S    N    V++Y
Sbjct: 186 ALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISY 245

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +I+I AL K+ +  +   L   M+  G    V ++ +LM
Sbjct: 246 SIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM 284



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N +I  FC  G +  A+ L +KM   GC P+  T  TLI G   +  +   ++L   
Sbjct: 515 VTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHM 574

Query: 85  MVN 87
           MV 
Sbjct: 575 MVQ 577


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 171/428 (39%), Positives = 226/428 (52%), Gaps = 67/428 (15%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++V   L      +RR Y P + VT+ +LIKG CME  I  A+ L  +M   GC PN  T
Sbjct: 145 NRVGEGLAVMAGILRRGYIP-DIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAIT 203

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             TL+ GL RTGN+++ LKLHQEM+N    +G  +KP V  Y  +ID LCKDR  D+ +D
Sbjct: 204 YGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARD 263

Query: 122 LFMEMK-----------------------------------DKGINANTL--------LC 138
           LF EMK                                   ++G+  N +        LC
Sbjct: 264 LFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLC 323

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K+ K++EA  LLE+M+QRG+ P + TY  L+ G+CLVG +N A  LF SM  KG  PDV 
Sbjct: 324 KEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVI 383

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKKIFNEM 235
            Y+VLINGYCK   VEEAM +   M+  G                        KK+F  M
Sbjct: 384 CYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVM 443

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           K+  +  + +   IF++GLCKNG + E MELF  L+  N +L +E FN LI G CK G  
Sbjct: 444 KVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKL 503

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           E A ELF KL  + L  DVV YNI+IH   + GQ+ K N L   ME+NGC  D  T+ TL
Sbjct: 504 ETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATL 563

Query: 356 MISFLQKE 363
           +  F + +
Sbjct: 564 IRGFFESK 571



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 138/272 (50%), Gaps = 18/272 (6%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TL------LCKKTKLVEANRL 149
           P +  +  L+ GL K +   Q   L+ +M+  GI+ +  TL      LC   ++ E   +
Sbjct: 94  PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAV 153

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           +  +++RG  P I TYT L+ G C+  +++ A  LF  M + G  P+  +Y  L+ G C+
Sbjct: 154 MAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCR 213

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKL--CNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
             N+  A+ + +EM+        N+  L   N  P   + +I ID LCK+    E  +LF
Sbjct: 214 TGNISIALKLHQEML--------NDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLF 265

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +++      V  + SLI G C  G +E A  LFN++  + +  +VV +N+LI  L KE
Sbjct: 266 EEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKE 325

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           G++ +   LL  M + G   ++ T+N+L+  F
Sbjct: 326 GKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGF 357


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 168/415 (40%), Positives = 225/415 (54%), Gaps = 64/415 (15%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V    + FG  +R+ YRP N  TF +L+KG C+EG I +A ++ K M  F CRP+  TC
Sbjct: 157 RVFEGFVVFGMILRKGYRP-NTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITC 215

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI+GL RTGN    LKLH+ M+NG  DFG   KP V  Y  +ID LCKD LV++ K+ 
Sbjct: 216 GVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEF 275

Query: 123 FMEMKDKGINANTL-------------------------------------------LCK 139
           F+EMK+KGI  N +                                           LCK
Sbjct: 276 FVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCK 335

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             K+ EA+ L +LM+QR + P   TY  L+ GYCL G V+    +F SM  K    D  S
Sbjct: 336 VGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGS 395

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGF-------------KKIFNEMKLCNVVPETFT 246
           YS+L+  YCK+  V  AM + REM+  G              +K+F E++  ++V ++ +
Sbjct: 396 YSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYSKVGDARKLFGEIQFQDMVLDSIS 455

Query: 247 C---NIFIDGLCKNGHVLEVMELFPTLEISNCELF--VEIFNSLIRGCCKFGIFEIASEL 301
               N+++DGLCKNG V E +++F  LE  NC+    V IFNSLI G C+    EIA EL
Sbjct: 456 YSIYNVYLDGLCKNGCVSEALDVFYGLE--NCKFASNVAIFNSLINGMCRSEKLEIAWEL 513

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           FN+L  + L  DVV Y I+I+ L K GQ +K   L L MEE GCA +V TFNTLM
Sbjct: 514 FNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLM 568



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 6/220 (2%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   ++ E   +  +++++G  P   T+T L+ G CL GK+  A+ +F  M      P 
Sbjct: 152 LCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPS 211

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +  VLI+G C+  N   A+ +   MI NG     N     N  P   + +  ID LCK
Sbjct: 212 AITCGVLISGLCRTGNTCNALKLHEAMI-NG-----NSDFGINCKPTVVSYSCIIDSLCK 265

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V    E F  ++       V  + SL+ G C    +E A  LF ++    L+ DVV 
Sbjct: 266 DGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVT 325

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +++LI AL K G++K+ + L   M +        T+N L+
Sbjct: 326 FSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILI 365



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 132/300 (44%), Gaps = 43/300 (14%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A   F   ++R   P +  T+N LI+G+C+ G + +  ++   M    C+ +  + 
Sbjct: 338 KVKEASGLFDLMVQRYVEP-STRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSY 396

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVN-----------GMGD----FGGIYKPNVF------ 101
             L+    +   ++  + L++EM++            +GD    FG I   ++       
Sbjct: 397 SILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYSKVGDARKLFGEIQFQDMVLDSISY 456

Query: 102 -CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
             Y   +DGLCK+  V +  D+F  +++    +N          +C+  KL  A  L   
Sbjct: 457 SIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNR 516

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           +    L P + TYT ++ G C VG+   A  LF  M  KG  P+V +++ L+ G C    
Sbjct: 517 LCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLC---- 572

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
               +N  R  I+    ++ ++M    + P+  T  I +D L K+ +  E + L PT  +
Sbjct: 573 ----LNSERPKIV----ELLHKMAARKLSPDASTLLIVMDILLKDENYHECLNLLPTFPV 624



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 18/226 (7%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L KK + +    +   M   GL     +   LLN  C V +V     +F  + RKG+ P+
Sbjct: 117 LAKKKQYLHVISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPN 176

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +++ L+ G C    + EA+            ++F  M + +  P   TC + I GLC+
Sbjct: 177 TRTFTNLVKGLCLEGKIGEAV------------RVFKIMGVFDCRPSAITCGVLISGLCR 224

Query: 257 NGHVLEVMELFPTLEIS------NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
            G+    ++L   +         NC+  V  ++ +I   CK G+ E A E F ++  K +
Sbjct: 225 TGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGI 284

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             +VV Y  L+H L    + ++   L + M ++G   DV TF+ L+
Sbjct: 285 FPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLI 330


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 142/421 (33%), Positives = 213/421 (50%), Gaps = 73/421 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  ++P +  TF +LI+G C+EG I +A  L  KM   G +PNV T  TLI
Sbjct: 119 AFSVLAKILKLGHQP-DPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLI 177

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + GN +  ++L + M  G        +P+V  Y S+ID LCKDR V +  +LF +M
Sbjct: 178 NGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 231

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             +GI+ +                                             LCK+ K+
Sbjct: 232 VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKV 291

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA+ ++++M+QRG+ P + TYT L++G+CL  +++ A+ +FD M RKGF PDV SY+ L
Sbjct: 292 TEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTL 351

Query: 204 INGYCKNFNVEEAMNVSREMI-----------------------LNGFKKIFNEMKLCNV 240
           INGYCK   +++AM +  EM                        L     +F+EM     
Sbjct: 352 INGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQ 411

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           +P+  T +I +D LCKN H+ E M L   +E SN    ++++N +I G C+ G  E A +
Sbjct: 412 MPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARD 471

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF+ LS K L   V  YNI+IH L K G + + N L + M+ N C+ D  T+NT+   FL
Sbjct: 472 LFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFL 531

Query: 361 Q 361
           Q
Sbjct: 532 Q 532



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 15/230 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F   +R+ + P + +++ +LI G+C    I  A  L ++M      P+  T +TL+
Sbjct: 329 AVKVFDMMVRKGFAP-DVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLM 387

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   G +   + L  EMV   G       P++  Y  L+D LCK+R +++   L   +
Sbjct: 388 YGLCHVGRLQDAIALFHEMV-ARGQM-----PDLVTYSILLDSLCKNRHLEEAMALLKAI 441

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           +   +N +          +C+  +L  A  L   +  +GL+P ++TY  +++G C  G +
Sbjct: 442 EASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLL 501

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           N A  LF  M      PD  +Y+ +  G+ +N     A+ +  EM+  GF
Sbjct: 502 NEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGF 551



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 12/179 (6%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A++ F+ +      P +  ++ L+    K  +    +++S +M   G            V
Sbjct: 49  ALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFG------------V 96

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P  +T NI I+  C    V     +   +     +     F +LIRG C  G    A  
Sbjct: 97  PPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALH 156

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           LF+K+  +    +VV Y  LI+ L K G       LL SME+  C  DV  + +++ S 
Sbjct: 157 LFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL 215


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/421 (33%), Positives = 216/421 (51%), Gaps = 73/421 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  ++P +  TF +LI+G C+EG I +A  L  KM   G +PNV T  TLI
Sbjct: 110 AFSVLAKILKLGHQP-DPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLI 168

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + GN +  ++L + M  G        +P+V  Y S+ID LCKDR V +  +LF +M
Sbjct: 169 NGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 222

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             +GI+ +                                             LCK+ K+
Sbjct: 223 VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKV 282

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA+ ++++M+QRG+ P + TYT L++G+CL  +++ A+ +FD M RKGF PDV SY+ L
Sbjct: 283 TEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTL 342

Query: 204 INGYCKNFNVEEAMNVSREM--------------ILNGFKKI---------FNEMKLCNV 240
           INGYCK   +++AM +  EM              +++G   +         F+EM     
Sbjct: 343 INGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQ 402

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           +P+  T +I +D LCKN H+ E M L   +E SN    ++++N +I G C+ G  E A +
Sbjct: 403 MPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARD 462

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF+ LS K L   V  YNI+IH L K G + + N L + M+ N C+ D  T+NT+   FL
Sbjct: 463 LFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFL 522

Query: 361 Q 361
           Q
Sbjct: 523 Q 523



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 12/179 (6%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A++ F+ +      P +  ++ L+    K  +    +++S +M   G            V
Sbjct: 40  ALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFG------------V 87

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P  +T NI I+  C    V     +   +     +     F +LIRG C  G    A  
Sbjct: 88  PPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALH 147

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           LF+K+  +    +VV Y  LI+ L K G       LL SME+  C  DV  + +++ S 
Sbjct: 148 LFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL 206


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/406 (33%), Positives = 208/406 (51%), Gaps = 72/406 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++ TFN+LI+G C+EG I +A  L  K    G +P+V T  TL+ GL + GN +  ++L 
Sbjct: 219 DNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLL 278

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + MV          +PNV  Y ++ID LCKDR V +  +LF EM  KGI+ +        
Sbjct: 279 RSMVQKN------CRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLI 332

Query: 137 -------------------------------------LCKKTKLVEANRLLELMMQRGLN 159
                                                LCK+  +  A+ ++++M++RG+ 
Sbjct: 333 HALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVE 392

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + TYT L++G+CL  +++ A+ +FD+M  KG +P+V SY++LINGYC+   +++AM +
Sbjct: 393 PDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGL 452

Query: 220 SREMILNGFKK-----------------------IFNEMKLCNVVPETFTCNIFIDGLCK 256
             +M L G                          +F+EM     +P+  T  I +D LCK
Sbjct: 453 LEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCK 512

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           N H+ E M L   +E SN +  + ++N  I G C+ G  E A +LF+ LS K L  DV  
Sbjct: 513 NHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRT 572

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           YNI+IH L K G + + N L   M+ENGC+ D   +NT++  FL+ 
Sbjct: 573 YNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRS 618



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 153/381 (40%), Gaps = 72/381 (18%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
           DA     +M      P+      L+T + +  + +  L L  +M     D  GI  P+V+
Sbjct: 133 DALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQM-----DSFGI-PPDVY 186

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL---LCKKTKLVEANRLLELM 153
               LI+  C  R +     +  ++   G        NTL   LC + K+ EA  L +  
Sbjct: 187 TLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKT 246

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           +  G  P + TY  L+NG C VG  + AI L  SM +K   P+V +Y+ +I+  CK+  V
Sbjct: 247 IGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQV 306

Query: 214 EEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTCNIF 250
            EA N+  EMI  G                          + NEM    ++P     +  
Sbjct: 307 TEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 366

Query: 251 IDGLCK------------------------------NGHVL-----EVMELFPTLEISNC 275
           +D LCK                              +GH L     E +++F T+    C
Sbjct: 367 VDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 426

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              V  +N LI G C+    + A  L  ++S + L+AD V YN LIH L   G+++    
Sbjct: 427 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIA 486

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           L   M  +G   D+ T+  L+
Sbjct: 487 LFHEMVASGQIPDLVTYRILL 507



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 12/179 (6%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A++ F+ M      P    ++ L+    K  +    +++S +M   G            +
Sbjct: 134 ALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFG------------I 181

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+ +T NI I+  C    +     +   L    C+     FN+LIRG C  G    A  
Sbjct: 182 PPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALH 241

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           LF+K   +    DVV Y  L++ L K G       LL SM +  C  +V  +NT++ S 
Sbjct: 242 LFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSL 300


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  220 bits (560), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 139/421 (33%), Positives = 215/421 (51%), Gaps = 73/421 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  ++P +  TF +LI+G  +EG I +A  L  KM   G RP+V T  TLI
Sbjct: 115 AFSVLAKILKLGHQP-DTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLI 173

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + GN +  ++L   MV          +PNVF Y ++ID LCKDR V +  +LF EM
Sbjct: 174 NGLCKVGNTSAAIRLLGSMVQKNC------QPNVFAYNTIIDSLCKDRQVTEAFNLFSEM 227

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             KGI+ +                                             LCK+ K+
Sbjct: 228 VTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKV 287

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA+ +++ M+QRG+ P + TYT L++G+CL+ +++ A+ +FD+M  KG MP+V SY+ L
Sbjct: 288 TEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTL 347

Query: 204 INGYCKNFNVEEAMNVSREM--------------ILNGFKKI---------FNEMKLCNV 240
           INGYCK   +++AM +  EM              +++G   +         F+EM  C+ 
Sbjct: 348 INGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQ 407

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           +P   T  I +D LCKN ++ E M L   +E SN +  +++ N  I G C+ G  E A +
Sbjct: 408 IPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARD 467

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF+ LS K L  DV  Y+I+I+ L + G + + + L   M+ENGC L+   +NT+   FL
Sbjct: 468 LFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFL 527

Query: 361 Q 361
           +
Sbjct: 528 R 528



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 120/267 (44%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+   +  L+  + K +       L  +M   GI  N           C   ++  A  +
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +++ G  P   T+T L+ G  + GK+  A+ LFD M  +GF PDV +Y  LING CK
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 178

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
             N   A+            ++   M   N  P  F  N  ID LCK+  V E   LF  
Sbjct: 179 VGNTSAAI------------RLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSE 226

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +        +  +NSLI   C    ++  + L N++    ++ DVV++N ++ AL KEG+
Sbjct: 227 MVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGK 286

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           + + + ++  M + G   +V T+  LM
Sbjct: 287 VTEAHDVVDKMIQRGVEPNVVTYTALM 313



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 117/272 (43%), Gaps = 38/272 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A       I+R   P N VT+ +L+ G C+   + +A ++   M   GC PNV + 
Sbjct: 286 KVTEAHDVVDKMIQRGVEP-NVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISY 344

Query: 63  DTLITGLRRTGNMNLTLKLHQEM---------------------VNGMGDFGGIYK---- 97
           +TLI G  +   ++  + L  EM                     V  + D   ++     
Sbjct: 345 NTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVA 404

Query: 98  ----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTL----LCKKTKLVE 145
               PN+  Y  L+D LCK+R + +   L   ++    D  I  N +    +C+  +L  
Sbjct: 405 CSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEA 464

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  L   +  +GL P ++TY+ ++NG C  G ++ A  LF  M   G   +   Y+ +  
Sbjct: 465 ARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITR 524

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           G+ +N     A+ + +EM+  GF    + M L
Sbjct: 525 GFLRNNETSRAIQLLQEMVARGFSADASTMTL 556



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 12/182 (6%)

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           ++ AI+ F+ M R    P    ++ L+    K  +    +++S +M   G          
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFG---------- 91

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             + P  +T +I I+  C    V     +   +     +     F +LIRG    G    
Sbjct: 92  --IPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGE 149

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A  LF+K+  +    DVV Y  LI+ L K G       LL SM +  C  +V  +NT++ 
Sbjct: 150 ALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIID 209

Query: 358 SF 359
           S 
Sbjct: 210 SL 211


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 134/405 (33%), Positives = 205/405 (50%), Gaps = 72/405 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  +F +LIKG C+EG I +A  L  KM   G +P+V    TLI GL +TG+ +  ++L 
Sbjct: 143 DTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLL 202

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M  G        +P+V  YG+LI  LCKDR   Q  +LF EM  KGI+ N +      
Sbjct: 203 RSMEKGNC------QPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLV 256

Query: 137 -------------------------------------LCKKTKLVEANRLLELMMQRGLN 159
                                                LCK+  + +A+ ++++M Q G+ 
Sbjct: 257 YALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVE 316

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + TYT L++G+CL  +++ A+ +FD M  KG  P+VFSY+ LINGYCK   +++AM +
Sbjct: 317 PDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYL 376

Query: 220 SREM--------------ILNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCK 256
             EM              +++G   +         F EM  C  +P+  T  I +D LCK
Sbjct: 377 FEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCK 436

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           N H+ + M L   +E SN +  ++I+  +I G C+ G  E A +LF+ LS K L  +V  
Sbjct: 437 NCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWT 496

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           YNI+ H L K G + +   L + M+EN C+ D  T+NT+   FL+
Sbjct: 497 YNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLR 541



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 163/382 (42%), Gaps = 72/382 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V + +LI   C +     A  L  +M T G  PN+ TC++L+  L   G       L  E
Sbjct: 215 VVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNE 274

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           MV+          PN     +++D LCK+ +V Q  D+   M   G+  + +        
Sbjct: 275 MVDSK------IMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDG 328

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC----------------------- 173
            C ++++ EA ++ ++M+ +G  P +F+Y  L+NGYC                       
Sbjct: 329 HCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPN 388

Query: 174 ------------LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
                        VG++  AIALF  M   G +PD+ +Y +L++  CKN ++++AM + +
Sbjct: 389 TVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLK 448

Query: 222 EM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            +              +++G          + +F+ +    + P  +T NI   GLCK G
Sbjct: 449 AIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRG 508

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + E  +LF  ++ + C      +N++ +G  +      A +L  ++  +    DV    
Sbjct: 509 LLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTT 568

Query: 319 ILIHALGKEGQIKKENYLLLSM 340
           +L+  L  +G  + E + L  M
Sbjct: 569 LLVGMLSDDGLDQSEAHKLEDM 590



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 141/348 (40%), Gaps = 37/348 (10%)

Query: 40  IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99
           + DA     +M      P++     ++T + +    +  L L ++M     D  GI   N
Sbjct: 55  LDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKM-----DSFGI-PHN 108

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           V+    LI+  C    V+    +  ++   G   +T         LC + ++ EA  L +
Sbjct: 109 VYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFD 168

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            M+  G  P +  Y  L+NG C  G  + AI L  SM +    PDV  Y  LI+  CK+ 
Sbjct: 169 KMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDR 228

Query: 212 NVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTCN 248
              +A N+  EMI  G                          + NEM    ++P   +  
Sbjct: 229 QQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLT 288

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             +D LCK G V +  ++   +  S  E  V  + +LI G C     + A ++F+ +  K
Sbjct: 289 TVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHK 348

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               +V +YN LI+   K  ++ K  YL   M       +  T+NTL+
Sbjct: 349 GCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLI 396



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 12/188 (6%)

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           Y     ++ A++ F+ M      P +  ++ ++    K       +++SR+M   G    
Sbjct: 49  YLHFNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPH- 107

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                        +T N+ I+  C    V     +   +    C+     F +LI+G C 
Sbjct: 108 -----------NVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCL 156

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A  LF+K+  +    DVV Y  LI+ L K G       LL SME+  C  DV  
Sbjct: 157 EGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVV 216

Query: 352 FNTLMISF 359
           + TL+ S 
Sbjct: 217 YGTLIHSL 224


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/422 (31%), Positives = 209/422 (49%), Gaps = 72/422 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  ++P +  TF +LI+G C+EG I DA  L  KM   G +PNV T  TLI
Sbjct: 123 AFSVLAKILKLGHQP-DTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLI 181

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + GN N  ++L + M  G        +P+V  Y S+ID LCKDR V +  +LF +M
Sbjct: 182 NGLCKVGNTNAAIRLLRSMEQGNC------QPDVVVYTSIIDSLCKDRQVTEAFNLFSKM 235

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             +GI+ +                                             LCK+ K+
Sbjct: 236 VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKI 295

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA+ ++++M+ RG+ P + TY  L++G+CL  +++ A+ +FD+M   G+ P+V SY+ L
Sbjct: 296 TEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTL 355

Query: 204 INGYCKNFNVEEAMNVSREMI----------------------LNGFKKIFNEMKLCNVV 241
           INGYCK   +++A  +  EM                       L     +F+EM     +
Sbjct: 356 INGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQDAIALFHEMVAHGQI 415

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+  T  I +D LCK  H+ E M L  T+E SN +  ++I+  +I G C+ G  E A ++
Sbjct: 416 PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDI 475

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           F+ LS K L  +V  Y I+I+ L + G + + N L + M+ NGC+ D  T+NT+    LQ
Sbjct: 476 FSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQ 535

Query: 362 KE 363
            +
Sbjct: 536 NK 537



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 152/372 (40%), Gaps = 58/372 (15%)

Query: 10  AFGSFIR--RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A  SF R    + P + V FN L+              L  +M +FG  P+V T + LI 
Sbjct: 53  ALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILIN 112

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
                  +     +  +++  +G     ++P+   + +LI GLC +              
Sbjct: 113 SFCHLNRLGFAFSVLAKILK-LG-----HQPDTATFTTLIRGLCVE-------------- 152

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                         K+ +A  L + M+  G  P + TY  L+NG C VG  N AI L  S
Sbjct: 153 -------------GKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRS 199

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK----------------- 230
           M +    PDV  Y+ +I+  CK+  V EA N+  +M+  G                    
Sbjct: 200 MEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCE 259

Query: 231 ------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                 + N+M    ++P+    +  +D LCK G + E  ++   + I   E  V  +N+
Sbjct: 260 WKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNA 319

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           L+ G C     + A ++F+ +       +V++YN LI+   K  ++ K  YL   M +  
Sbjct: 320 LMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKE 379

Query: 345 CALDVDTFNTLM 356
              +  T+NTLM
Sbjct: 380 LIPNTVTYNTLM 391



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 16/236 (6%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  A+  F + +   Y P N +++N+LI G+C    +  A+ L ++M      PN  T
Sbjct: 328 SEMDEAVKVFDTMVHNGYAP-NVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVT 386

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TL+      G +   + L  EMV      G I  P++  Y  L+D LCK   +D+   
Sbjct: 387 YNTLMHXCH-VGRLQDAIALFHEMVA----HGQI--PDLATYRILLDYLCKKSHLDEAMA 439

Query: 122 LFMEMK----DKGINANTL----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L   ++    D  I   T+    +C+  +L  A  +   +  +GL P + TYT ++NG C
Sbjct: 440 LLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLC 499

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
             G ++ A  LF  M   G  PD  +Y+ +  G  +N     A+ + +EM+  GF 
Sbjct: 500 RRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS 555



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 22/225 (9%)

Query: 14  FIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71
           F   C + L  N VT+N+L+   C  G ++DA  L  +M   G  P++ T   L+  L +
Sbjct: 372 FEEMCQKELIPNTVTYNTLMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCK 430

Query: 72  TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
             +++  + L + +       G    P++  Y  +IDG+C+   ++  +D+F  +  KG+
Sbjct: 431 KSHLDEAMALLKTIE------GSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGL 484

Query: 132 NANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
             N          LC++  L EAN+L   M   G +P   TY  +  G     +   AI 
Sbjct: 485 RPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQ 544

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           L   M  +GF  DV + ++L+   C     ++ ++ S + IL+ F
Sbjct: 545 LLQEMLARGFSADVSTTTLLVEMLC-----DDKLDQSVKQILSEF 584



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 19/231 (8%)

Query: 129 KGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
           K +N NTL      L   NR+L +       P    +  LL       +     +L + M
Sbjct: 43  KSLNFNTL---DDALSSFNRMLHMHPP----PSTVDFNRLLTSIAKTKQYPTVFSLSNQM 95

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
              G  PDV++ ++LIN +C    +  A +V  +++  G +            P+T T  
Sbjct: 96  DSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQ------------PDTATFT 143

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             I GLC  G + + + LF  +     +  V  + +LI G CK G    A  L   +   
Sbjct: 144 TLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQG 203

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N   DVV Y  +I +L K+ Q+ +   L   M   G + D+ T+ +L+ S 
Sbjct: 204 NCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSL 254


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/407 (32%), Positives = 206/407 (50%), Gaps = 72/407 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  TF +LI+G C+EG I DA  L  KM   G +PNV T  TLI GL + GN N  ++L 
Sbjct: 136 DTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLL 195

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M  G        +P+V  Y S+ID LCKDR V +  +LF +M  +GI+ +        
Sbjct: 196 RSMEQGNC------QPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLI 249

Query: 137 -------------------------------------LCKKTKLVEANRLLELMMQRGLN 159
                                                LCK+ K+ EA+ ++++M+ RG+ 
Sbjct: 250 HSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE 309

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + TY  L++G+CL  +++ A+ +FD+M   G+ P+V SY+ LINGYCK   +++A  +
Sbjct: 310 PNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYL 369

Query: 220 SREM--------------ILNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCK 256
             EM              +++G   +         F+EM     +P+  T  I +D LCK
Sbjct: 370 FEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCK 429

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             H+ E M L  T+E SN +  ++I+  +I G C+ G  E A ++F+ LS K L  +V  
Sbjct: 430 KSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRT 489

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y I+I+ L + G + + N L + M+ NGC+ D  T+NT+    LQ +
Sbjct: 490 YTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNK 536



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 15/236 (6%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  A+  F + +   Y P N +++N+LI G+C    +  A+ L ++M      PN  T
Sbjct: 326 SEMDEAVKVFDTMVHNGYAP-NVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVT 384

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TL+ GL   G +   + L  EMV      G I  P++  Y  L+D LCK   +D+   
Sbjct: 385 YNTLMHGLCHVGRLQDAIALFHEMVA----HGQI--PDLATYRILLDYLCKKSHLDEAMA 438

Query: 122 LFMEMK----DKGINANTL----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L   ++    D  I   T+    +C+  +L  A  +   +  +GL P + TYT ++NG C
Sbjct: 439 LLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLC 498

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
             G ++ A  LF  M   G  PD  +Y+ +  G  +N     A+ + +EM+  GF 
Sbjct: 499 RRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS 554



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 21/225 (9%)

Query: 14  FIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71
           F   C + L  N VT+N+L+ G C  G ++DA  L  +M   G  P++ T   L+  L +
Sbjct: 370 FEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCK 429

Query: 72  TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
             +++  + L + +       G    P++  Y  +IDG+C+   ++  +D+F  +  KG+
Sbjct: 430 KSHLDEAMALLKTIE------GSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGL 483

Query: 132 NANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
             N          LC++  L EAN+L   M   G +P   TY  +  G     +   AI 
Sbjct: 484 RPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQ 543

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           L   M  +GF  DV + ++L+   C     ++ ++ S + IL+ F
Sbjct: 544 LLQEMLARGFSADVSTTTLLVEMLC-----DDKLDQSVKQILSEF 583



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 19/231 (8%)

Query: 129 KGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
           K +N NTL      L   NR+L +       P    +  LL       +     +L + M
Sbjct: 41  KSLNFNTL---DDALSSFNRMLHMHPP----PSTVDFNRLLTSIAKTKQYPTVFSLSNQM 93

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
              G  PDV++ ++LIN +C       A +V  +++  G +            P+T T  
Sbjct: 94  DSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQ------------PDTATFT 141

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             I GLC  G + + + LF  +     +  V  + +LI G CK G    A  L   +   
Sbjct: 142 TLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQG 201

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N   DVV Y  +I +L K+ Q+ +   L   M   G + D+ T+ +L+ S 
Sbjct: 202 NCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSL 252


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/421 (31%), Positives = 214/421 (50%), Gaps = 73/421 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A  A    ++  ++P +  TF +LI+G C+EG I +A  L  KM   G +PNV T  TLI
Sbjct: 124 AFSALAKILKLGHQP-DATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLI 182

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + GN +  ++L + M  G        +PNV  + +LID LCKDR V +  ++F EM
Sbjct: 183 NGLCKVGNTSAAIRLLRSMEQGN------CQPNVVVFSTLIDSLCKDRQVTEAFNIFSEM 236

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             KGI+ N +                                           LCK+  +
Sbjct: 237 ITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMV 296

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA+ ++++M+ RG+ P + TY  L++G+CL  +V+VA+ +FD+M  K  + +V SY+ L
Sbjct: 297 AEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTL 356

Query: 204 INGYCKNFNVEEAMNVSREM--------------ILNGFKKI---------FNEMKLCNV 240
           INGYCK  +V++AM +  EM              +++G   +         F+EM     
Sbjct: 357 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 416

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           +P+  T     D LCKN H+ + M L   +E SN +  ++I+ +++ G C+ G  E A +
Sbjct: 417 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 476

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF+ LS K L  +V  YNI+IH L K+G + + + L   M +NGC+ +  T+N +   FL
Sbjct: 477 LFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFL 536

Query: 361 Q 361
           +
Sbjct: 537 R 537



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 153/334 (45%), Gaps = 39/334 (11%)

Query: 56  RPNVTTCD--TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
           +P  +T D   L+T + +T + +  L L ++M     D  GI  P+V+    +I+ LC  
Sbjct: 65  QPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQM-----DSFGI-PPDVYTLAIVINSLCHL 118

Query: 114 RLVD-----QTKDLFMEMKDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             VD       K L +  +       TL   LC + K+ EA  L + M+  G  P + TY
Sbjct: 119 NRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTY 178

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L+NG C VG  + AI L  SM +    P+V  +S LI+  CK+  V EA N+  EMI 
Sbjct: 179 GTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMIT 238

Query: 226 NGFKK-----------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
            G                          + NEM    ++P+ FT N  +D LCK G V E
Sbjct: 239 KGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAE 298

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             ++   +     E  V  +N+L+ G C     ++A ++F+ +  K+ VA+V++YN LI+
Sbjct: 299 AHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLIN 358

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              K   + K  YL   M       +  T+NTL+
Sbjct: 359 GYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLI 392



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 14/215 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++N+LI G+C   ++  A  L ++M+     PN  T +TLI GL   G +   + L 
Sbjct: 349 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLF 408

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTL-- 136
            EMV      G I  P++  Y +L D LCK+R +D+   L   ++    D  I   T   
Sbjct: 409 HEMVAR----GQI--PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTIL 462

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             +C+  +L +A  L   +  +GL P ++TY  +++G C  G +  A  LF  M + G  
Sbjct: 463 DGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCS 522

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           P+  +Y+++  G+ +N      + +  EM+  GF 
Sbjct: 523 PNDCTYNLITRGFLRNNEALRTIELLEEMLARGFS 557



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 23/237 (9%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L EA      M+ +   P    +  LL         +  ++L   M   G  PDV++ ++
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCN 239
           +IN  C    V+ A +   +++  G +                        +F++M    
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
             P   T    I+GLCK G+    + L  ++E  NC+  V +F++LI   CK      A 
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +F+++  K +  ++V YN LIH L K  + K    L+  M ++    DV T NT++
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVV 287


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/421 (31%), Positives = 214/421 (50%), Gaps = 73/421 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A  A    ++  ++P +  TF +LI+G C+EG I +A  L  KM   G +PNV T  TLI
Sbjct: 124 AFSALAKILKLGHQP-DATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLI 182

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + GN +  ++L + M  G        +PNV  + +LID LCKDR V +  ++F EM
Sbjct: 183 NGLCKVGNTSAAIRLLRSMEQGNC------QPNVVVFSTLIDSLCKDRQVTEAFNIFSEM 236

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             KGI+ N +                                           LCK+  +
Sbjct: 237 ITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMV 296

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA+ ++++M+ RG+ P + TY  L++G+CL  +V+VA+ +FD+M  K  + +V SY+ L
Sbjct: 297 AEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTL 356

Query: 204 INGYCKNFNVEEAMNVSREM--------------ILNGFKKI---------FNEMKLCNV 240
           INGYCK  +V++AM +  EM              +++G   +         F+EM     
Sbjct: 357 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 416

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           +P+  T     D LCKN H+ + M L   +E SN +  ++I+ +++ G C+ G  E A +
Sbjct: 417 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 476

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF+ LS K L  +V  YNI+IH L K+G + + + L   M +NGC+ +  T+N +   FL
Sbjct: 477 LFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFL 536

Query: 361 Q 361
           +
Sbjct: 537 R 537



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 153/334 (45%), Gaps = 39/334 (11%)

Query: 56  RPNVTTCD--TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
           +P  +T D   L+T + +T + +  L L ++M     D  GI  P+V+    +I+ LC  
Sbjct: 65  QPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQM-----DSFGI-PPDVYTLAIVINSLCHL 118

Query: 114 RLVD-----QTKDLFMEMKDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             VD       K L +  +       TL   LC + K+ EA  L + M+  G  P + TY
Sbjct: 119 NRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTY 178

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L+NG C VG  + AI L  SM +    P+V  +S LI+  CK+  V EA N+  EMI 
Sbjct: 179 GTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMIT 238

Query: 226 NGFKK-----------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
            G                          + NEM    ++P+ FT N  +D LCK G V E
Sbjct: 239 KGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAE 298

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             ++   +     E  V  +N+L+ G C     ++A ++F+ +  K+ VA+V++YN LI+
Sbjct: 299 AHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLIN 358

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              K   + K  YL   M       +  T+NTL+
Sbjct: 359 GYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLI 392



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 14/215 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++N+LI G+C   ++  A  L ++M+     PN  T +TLI GL   G +   + L 
Sbjct: 349 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLF 408

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTL-- 136
            EMV      G I  P++  Y +L D LCK+R +D+   L   ++    D  I   T   
Sbjct: 409 HEMVAR----GQI--PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTIL 462

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             +C+  +L +A  L   +  +GL P ++TY  +++G C  G +  A  LF  M + G  
Sbjct: 463 DGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCS 522

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           P+  +Y+++  G+ +N      + +  EM+  GF 
Sbjct: 523 PNDCTYNLITRGFLRNNEALRTIELLEEMLARGFS 557



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 23/237 (9%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L EA      M+ +   P    +  LL         +  ++L   M   G  PDV++ ++
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCN 239
           +IN  C    V+ A +   +++  G +                        +F++M    
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
             P   T    I+GLCK G+    + L  ++E  NC+  V +F++LI   CK      A 
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +F+++  K +  ++V YN LIH L K  + K    L+  M ++    DV T NT++
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVV 287


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 200/378 (52%), Gaps = 49/378 (12%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT+++LIKG CM+  I +A++L   M   GCRP+     TL+ GL +TGN+N  L+L
Sbjct: 224 LDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQL 283

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
           HQEM+N  G +G   KP +  Y  +IDGLCKDR  D+ ++LF EMK +GI  +       
Sbjct: 284 HQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTL 343

Query: 136 -------------------------------------LLCKKTKLVEANRLLELMMQRGL 158
                                                +LCKK K++EAN+LLE+++QRG 
Sbjct: 344 IHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGC 403

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P + T T L+ G C+  +++ A  LF  M + G MP+V + + L+ G C++ N++ A+ 
Sbjct: 404 IPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALE 463

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           + + M+ +      N    C   P   + +I IDGLCK G   E  ELF  ++       
Sbjct: 464 LHKNMLSDTSPYGIN----CK--PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPD 517

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           V  + SLI G C+ G ++ A  LFN++    +  DV  +++LI  L KEG++ + N LL 
Sbjct: 518 VISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLE 577

Query: 339 SMEENGCALDVDTFNTLM 356
            M + GC  +  T+ TL+
Sbjct: 578 VMIQRGCIPNTVTYTTLV 595



 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/378 (34%), Positives = 195/378 (51%), Gaps = 49/378 (12%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT+++LIKG CM+  I +A+QL   M   GCRP+     TL+ GL +TG +N+ L L
Sbjct: 43  LDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHL 102

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-------------- 127
           HQEM+N    +G   KP +  Y  +IDGLCKDR  D+ ++LF EMK              
Sbjct: 103 HQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSL 162

Query: 128 ---------------------DKGINANT--------LLCKKTKLVEANRLLELMMQRGL 158
                                D GI ++         +LCK+ K++EAN LLE+M+QRG 
Sbjct: 163 IHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGC 222

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
              I TY+ L+ G C+  +++ A  LF SM + G  PD  +Y  L+ G C+  N+  A+ 
Sbjct: 223 ILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQ 282

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           + +EM LN   +   + K     P   + +I IDGLCK+    E  ELF  ++       
Sbjct: 283 LHQEM-LNDTGRYGIKCK-----PTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPD 336

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           V  + +LI G C  G +E A  LFN++    +  DV   ++LI  L K+G++ + N LL 
Sbjct: 337 VISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLE 396

Query: 339 SMEENGCALDVDTFNTLM 356
            + + GC  DV T  TL+
Sbjct: 397 VVIQRGCIPDVVTCTTLV 414



 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 185/362 (51%), Gaps = 51/362 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT  +L+KG CM+  I  A+QL  KM   GC PNV TC TL+ GL ++GN+ + L+LH+ 
Sbjct: 408 VTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKN 467

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----------------- 127
           M++    +G   KPN   Y  +IDGLCK    D+ ++LF EMK                 
Sbjct: 468 MLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHG 527

Query: 128 ------------------DKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPV 161
                             D G+  +         +LCK+ K++EAN LLE+M+QRG  P 
Sbjct: 528 FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPN 587

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
             TYT L+ G C+  +++ A  LF  M + G +PDV +Y  L+ G C+  N++ A+ + +
Sbjct: 588 TVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHK 647

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
           +M+ +            N  P+  + +I IDGLCK+G   E  ELF  ++       V  
Sbjct: 648 KMLSD------TGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVIS 701

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           + SLI G C+ G  E A  LFN++  + +  + V Y+++IH   KEGQI K   L   ME
Sbjct: 702 YTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKME 759

Query: 342 EN 343
            N
Sbjct: 760 AN 761



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 117/215 (54%), Gaps = 28/215 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV+ A       I+R   P N VT+ +L+KG CM   I +A+QL  KM   GC P+V T 
Sbjct: 568 KVIEANELLEVMIQRGCIP-NTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTY 626

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            TL+ GL +TGN+   L+LH++M++  G +G  +KP+V  Y  +IDGLCK    D+ ++L
Sbjct: 627 GTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEAREL 686

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           F EMK  G+  N                           + +YT L++G+C  GK+  A 
Sbjct: 687 FKEMKALGVIPN---------------------------VISYTSLIHGFCRSGKLEDAK 719

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
            LF+ M  +G   +  +YSV+I+G+CK   +++A+
Sbjct: 720 HLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 754



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
           + CK+ K++EAN LLE+M+QRG    I TY+ L+ G C+  +++ A  LF SM + G  P
Sbjct: 19  MFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRP 78

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D  +Y  L+ G C+   +  A+++ +EM LN   +   + K     P   + +I IDGLC
Sbjct: 79  DAIAYGTLMKGLCQTGKINIALHLHQEM-LNDTSQYGIKCK-----PTLVSYSIIIDGLC 132

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K+    E  ELF  ++       V  + SLI G C+ G +E A  LFN++    + +DV 
Sbjct: 133 KDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVT 192

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             ++LI  L KEG++ + N LL  M + GC LD+ T++TL+
Sbjct: 193 TSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLI 233



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           + P+  T  + ID  CK G V+E  EL   +    C L +  +++LI+G C       A+
Sbjct: 6   IQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEAT 65

Query: 300 ELF---NKLSCKNLVADVVAYNILIHALGKEGQI 330
           +LF    KL C+    D +AY  L+  L + G+I
Sbjct: 66  QLFMSMKKLGCR---PDAIAYGTLMKGLCQTGKI 96


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 200/378 (52%), Gaps = 49/378 (12%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT+++LIKG CME  I +A+ L   M   GCRP+  T  TL+ GL +TGN+N+ L+L
Sbjct: 380 LDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQL 439

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
           HQEM+N  G +G   KP +  Y  +IDGLCKDR  D+ ++LF EMK +GI  +       
Sbjct: 440 HQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTL 499

Query: 136 -------------------------------------LLCKKTKLVEANRLLELMMQRGL 158
                                                +LCKK K++EAN+LLE+++QRG 
Sbjct: 500 IHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGC 559

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
              + T T L+ G C+  +++ A  LF  M + G MP+V + + L+ G C++ N++ A+ 
Sbjct: 560 ILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALE 619

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           + + M+ +      N    C   P   + +I IDGLCK G   E  ELF  ++       
Sbjct: 620 LHKNMLSDTSPYGIN----CK--PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPD 673

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           V  + SLI G C+ G ++ A  LFN++    +  DV  +++LI  L KEG++ + N LL 
Sbjct: 674 VISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLE 733

Query: 339 SMEENGCALDVDTFNTLM 356
            M + GC  +  T+ TL+
Sbjct: 734 VMIQRGCIPNTVTYTTLV 751



 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 187/365 (51%), Gaps = 51/365 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT  +L+KG CM+  I  A+QL  KM   GC PNV TC TL+ GL ++GN+ + L+L
Sbjct: 561 LDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALEL 620

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-------------- 127
           H+ M++    +G   KPN   Y  +IDGLCK    D+ ++LF EMK              
Sbjct: 621 HKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSL 680

Query: 128 ---------------------DKGINANT--------LLCKKTKLVEANRLLELMMQRGL 158
                                D G+  +         +LCK+ K++EAN LLE+M+QRG 
Sbjct: 681 IHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGC 740

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P   TYT L+ G C+  +++ A  LF  M + G +PDV +Y  L+ G C+  N++ A+ 
Sbjct: 741 IPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALE 800

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           + ++M+ +            N  P+  + +I IDGLCK+G   E  ELF  ++       
Sbjct: 801 LHKKMLSD------TGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPN 854

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           V  + SLI G C+ G  E A  LFN++  + +  + V Y+++IH   KEGQI K   L  
Sbjct: 855 VISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQ 912

Query: 339 SMEEN 343
            ME N
Sbjct: 913 KMEAN 917



 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 181/355 (50%), Gaps = 54/355 (15%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT+++LIKG CME  I +A+ L   M   GCRP+  T  TL+ GL +TGN+N+ L+L
Sbjct: 87  LDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQL 146

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
           HQEM+N  G +G   KP +  Y  +IDGLCKDR  D+ ++LF EMK +G+  +       
Sbjct: 147 HQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSL 206

Query: 136 -------------------------------------LLCKKTKLVEANRLLELMMQRGL 158
                                                + CK+ K++EAN LLE+M+ RG 
Sbjct: 207 IHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGC 266

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
              I TY+ L+ G C+  +++ A  LF SM + G  PD  +Y  L+ G C+   +  A++
Sbjct: 267 ILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALH 326

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           + +EM+ +      ++  +  + P+  T ++ ID LCK G V+E  EL   +    C L 
Sbjct: 327 LHQEMLND-----TSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILD 381

Query: 279 VEIFNSLIRGCCKFGIFEIASELF---NKLSCKNLVADVVAYNILIHALGKEGQI 330
           +  +++LI+G C       A+ LF    KL C+    D + Y  L+  L + G I
Sbjct: 382 IVTYSTLIKGLCMEHRISEATWLFMSMQKLGCR---PDAITYGTLMKGLCQTGNI 433



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 176/336 (52%), Gaps = 34/336 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT+++LIKG CM+  I +A+QL   M   GCRP+     TL+ GL +TG +N+ L L
Sbjct: 268 LDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHL 327

Query: 82  HQEMVNGMGDFG-GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           HQEM+N    +G    +P+V     LID                           +LCK+
Sbjct: 328 HQEMLNDTSQYGIKCIRPDVTTSSMLID---------------------------ILCKE 360

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            K++EAN LLE+M+QRG    I TY+ L+ G C+  +++ A  LF SM + G  PD  +Y
Sbjct: 361 GKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITY 420

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
             L+ G C+  N+  A+ + +EM LN   +   + K     P   + +I IDGLCK+   
Sbjct: 421 GTLMKGLCQTGNINIALQLHQEM-LNDTGRYGIKCK-----PTLISYSIIIDGLCKDRRE 474

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            E  ELF  ++       V  + +LI G C  G +E A  LFN++    +  DV   ++L
Sbjct: 475 DEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVL 534

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           I  L K+G++ + N LL  + + GC LDV T  TL+
Sbjct: 535 IDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLV 570



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 134/274 (48%), Gaps = 28/274 (10%)

Query: 87  NGMGDFGGI----YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            G+    GI    Y P++  Y    D      L+D                  +LCK+ K
Sbjct: 28  EGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLID------------------ILCKEGK 69

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           ++EAN LLE+M+QRG    I TY+ L+ G C+  +++ A  LF SM + G  PD  +Y  
Sbjct: 70  VIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGT 129

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           L+ G C+  N+  A+ + +EM LN   +   + K     P   + +I IDGLCK+    E
Sbjct: 130 LMKGLCQTGNINIALQLHQEM-LNDTGRYGIKCK-----PTLISYSIIIDGLCKDRREDE 183

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             ELF  ++       V  + SLI G C  G +E A  LFN++    +  DV    +LI 
Sbjct: 184 ARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLID 243

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              KEG++ + N LL  M   GC LD+ T++TL+
Sbjct: 244 MFCKEGKVIEANELLEVMVHRGCILDIVTYSTLI 277



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 44/177 (24%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           GL P  FT+  L+N  C V +VN  +A    + R+G++PD+ +YS+              
Sbjct: 5   GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIR------------- 51

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
                                    P+  T ++ ID LCK G V+E  EL   +    C 
Sbjct: 52  -------------------------PDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCI 86

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELF---NKLSCKNLVADVVAYNILIHALGKEGQI 330
           L +  +++LI+G C       A+ LF    KL C+    D + Y  L+  L + G I
Sbjct: 87  LDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCR---PDAITYGTLMKGLCQTGNI 140



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 38/174 (21%)

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M   G  PD F++++LIN  C    V E +     ++  G+     ++   ++ P+  T 
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGY---IPDIVTYSIRPDVTTS 57

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           ++ ID LCK G V+E  EL         E+ ++      RGC                  
Sbjct: 58  SMLIDILCKEGKVIEANELL--------EVMIQ------RGC------------------ 85

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
              + D+V Y+ LI  L  E +I +  +L +SM++ GC  D  T+ TLM    Q
Sbjct: 86  ---ILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQ 136


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/391 (33%), Positives = 207/391 (52%), Gaps = 38/391 (9%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +K++ A+  F    +  + P + +T+ ++IKG C  G+  +A QL+KKM   GC+P+V  
Sbjct: 155 AKIIDAVKLFDEIGKMGFAP-SLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVA 213

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +T+I  L +    N  +    EMV+      GI  PNV  Y S++ G C    +++   
Sbjct: 214 YNTVIDSLCKDRRANEAMYFFSEMVDQ-----GI-PPNVVTYSSILHGFCNLGQLNEATS 267

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF +M  + +  NT+        LCK+  ++EA R+ E+M + G+ P  +TY+ L++GYC
Sbjct: 268 LFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYC 327

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---------- 223
           L  +++ A  LFD M  KGF P V  Y++LING+CK+  + EA  +  EM          
Sbjct: 328 LQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTV 387

Query: 224 ----ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
               ++ GF         +K+F EM    ++P++ T +I +DGLCK+GH+ E   L   +
Sbjct: 388 TYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAM 447

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           + S  E  + I+N LI+G C FG  E A ELF+ L  K +   VV Y ++I  L KEG  
Sbjct: 448 QESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLS 507

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            +   +   M  NGC  +  T+N  +  FL+
Sbjct: 508 NEACEMFRKMVVNGCLPNSCTYNVAIQGFLR 538



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 161/352 (45%), Gaps = 27/352 (7%)

Query: 20  RPLNDVT-FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           RPL  V  FN L+     + +      L K+M     RPNV T   LI  L  +   ++ 
Sbjct: 64  RPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVH 123

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC-KDRLVDQTKDLFMEMKDKGINANTL- 136
                  +  M   G   +P    +G+L++GLC K +++D  K LF E+   G   + + 
Sbjct: 124 FAF--SALGKMFKLG--LQPTHVTFGTLLNGLCSKAKIIDAVK-LFDEIGKMGFAPSLIT 178

Query: 137 -------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                  LCK      A +LL+ M ++G  P +  Y  +++  C   + N A+  F  M 
Sbjct: 179 YTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMV 238

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
            +G  P+V +YS +++G+C    + EA ++ ++MI              NV+P T T  I
Sbjct: 239 DQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGR------------NVMPNTVTFTI 286

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            +DGLCK G +LE   +F  +  +  E     +++L+ G C     + A +LF+ +  K 
Sbjct: 287 LVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKG 346

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
               V  YNILI+   K  ++ +   LL  M +     D  T++TLM  F Q
Sbjct: 347 FAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQ 398



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 14/211 (6%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N LI G C    + +A  L+ +M      P+  T  TL+ G  + G   +  KL +EM 
Sbjct: 354 YNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMC 413

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
           +    +G +  P+   Y  L+DGLCK   +D+   L   M++  I  +          +C
Sbjct: 414 S----YGLL--PDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMC 467

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
              KL  A  L   +  +G+ P + TYT +++G    G  N A  +F  M   G +P+  
Sbjct: 468 NFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSC 527

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           +Y+V I G+ +N +   A+ +  EM+  GF 
Sbjct: 528 TYNVAIQGFLRNGDPSNAVRLIEEMVGRGFS 558



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 14/191 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+++L++GFC  G  + A +L K+M ++G  P+  T   L+ GL + G+++   +L 
Sbjct: 385 DTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLL 444

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M           +P++  Y  LI G+C    ++  ++LF  +  KGI  + +      
Sbjct: 445 KAMQESK------IEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMI 498

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K+    EA  +   M+  G  P   TY   + G+   G  + A+ L + M  +GF 
Sbjct: 499 SGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFS 558

Query: 195 PDVFSYSVLIN 205
            D  ++ +L++
Sbjct: 559 ADSSTFQMLLD 569


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 145/395 (36%), Positives = 208/395 (52%), Gaps = 61/395 (15%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++V   L A    +RR Y P + VT+N+LIKG C                    R +V T
Sbjct: 24  NRVSEGLAAMTGILRRGYIP-DIVTYNTLIKGLCRVH-----------------RISVAT 65

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           C  +I GL + G+ +   ++ +EM   GM        PNV  Y SL+ G C    ++++K
Sbjct: 66  C-IIIDGLCKVGHEDEAKEIFEEMKAQGM-------IPNVISYSSLVHGFCCAGKLEESK 117

Query: 121 DLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            LF EM D+G+  N         +LCK+ K++EA +LLE+ +QRG+   + TY  L++G+
Sbjct: 118 RLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGF 177

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------- 223
           C +G ++ A  LF SM  KG   +  SY++LINGYCK + VEEAMN+  EM         
Sbjct: 178 CKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNV 237

Query: 224 -----ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                +L G           K+F  MK   +  ++    IF+DGLCKNG + E MELF  
Sbjct: 238 KTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNE 297

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           L+  N +L  E ++ LI G CK G  EIA E F +LS + L  +VV  NI+IH   +  Q
Sbjct: 298 LKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQ 357

Query: 330 IKKENYL---LLSMEENGCALDVDTFNTLMISFLQ 361
           + K N L   +  MEENGC  D+ T+NTL+  F +
Sbjct: 358 VDKANILFEKMEKMEENGCTPDIITYNTLLRGFCE 392



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 114/242 (47%), Gaps = 29/242 (11%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI-------------- 182
           LC   ++ E    +  +++RG  P I TY  L+ G C V +++VA               
Sbjct: 20  LCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVATCIIIDGLCKVGHED 79

Query: 183 ---ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
               +F+ M  +G +P+V SYS L++G+C    +EE+            K++FNEM    
Sbjct: 80  EAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEES------------KRLFNEMVDQG 127

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           V P     N+ ID LCK G V+E  +L          L +  +NSLI G CK G    A 
Sbjct: 128 VQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSAR 187

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +LF  +  K    + ++Y ILI+   K  ++++   L   M + G   +V T++TL+   
Sbjct: 188 KLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGL 247

Query: 360 LQ 361
           LQ
Sbjct: 248 LQ 249



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 17/212 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N++++  LI G+C    + +A  L  +M   G RPNV T  TL+TGL +TG +    KL 
Sbjct: 201 NEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLF 260

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
                G+    GI   +   Y   +DGLCK+ ++ +  +LF E+K      +        
Sbjct: 261 -----GVMKASGISVDSCI-YVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLI 314

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR---K 191
             LCK  K+  A    + + Q GL P + T   +++G+C V +V+ A  LF+ M +    
Sbjct: 315 DGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEEN 374

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           G  PD+ +Y+ L+ G+C++  +EE +N+  +M
Sbjct: 375 GCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 406


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 135/424 (31%), Positives = 215/424 (50%), Gaps = 79/424 (18%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           VLG +M  G      Y P +  TFN+LIKG  +EG + +A  LV +M   GC+P+V T +
Sbjct: 135 VLGKVMKLG------YEP-DTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYN 187

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           +++ G+ R+G+ +L L L ++M           K +VF Y ++ID LC+D  +D    LF
Sbjct: 188 SIVNGICRSGDTSLALDLLRKMEERN------VKADVFTYSTIIDSLCRDGCIDAAISLF 241

Query: 124 MEMKDKGINANTL--------LCK-----------------------------------K 140
            EM+ KGI ++ +        LCK                                   +
Sbjct: 242 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 301

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            KL EAN L + M+ RG++P I TY  L++GYC+  +++ A  + D M R    PD+ ++
Sbjct: 302 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 361

Query: 201 SVLINGYCKNFNVEEAMNVSR--------------EMILNGF---------KKIFNEMKL 237
           + LI GYC    V++ M V R               +++ GF         +++F EM  
Sbjct: 362 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS 421

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             V+P+  T  I +DGLC NG + + +E+F  L+ S  +L + ++ ++I G CK G  E 
Sbjct: 422 HGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVED 481

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A  LF  L CK +  +V+ Y ++I  L K+G + + N LL  MEE+G A +  T+NTL+ 
Sbjct: 482 AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIR 541

Query: 358 SFLQ 361
           + L+
Sbjct: 542 AHLR 545



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 160/358 (44%), Gaps = 52/358 (14%)

Query: 8   LMAFGSFIRRCYRPLNDVT-----FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           L    SF   C R  + ++     F   ++   ++    DA  L ++M      P++   
Sbjct: 22  LCTISSFFSSCERDFSSISNGNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDF 81

Query: 63  DTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
               + + RT   NL L   +++ +NG+         N++    +I+  C+         
Sbjct: 82  SRFFSAIARTKQFNLVLDFCKQLELNGIAH-------NIYTLNIMINCFCR--------- 125

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
                           C KT    A  +L  +M+ G  P   T+  L+ G  L GKV+ A
Sbjct: 126 ----------------CCKTCF--AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 167

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           + L D M   G  PDV +Y+ ++NG C++ +   A+++ R+M            +  NV 
Sbjct: 168 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKM------------EERNVK 215

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
            + FT +  ID LC++G +   + LF  +E    +  V  +NSL+RG CK G +   + L
Sbjct: 216 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 275

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              +  + +V +V+ +N+L+    KEG++++ N L   M   G + ++ T+NTLM  +
Sbjct: 276 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGY 333



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 26/238 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF SLIKG+CM   + D  ++ + ++  G   N  T   L+ G  ++G + L  +L QE
Sbjct: 359 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 418

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTL---- 136
           MV+      G+  P+V  YG L+DGLC +  +++  ++F +++    D GI   T     
Sbjct: 419 MVSH-----GVL-PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 472

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +CK  K+ +A  L   +  +G+ P + TYT +++G C  G ++ A  L   M   G  P+
Sbjct: 473 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 532

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
             +Y+ LI  + ++ +            L    K+  EMK C    +  +  + ID L
Sbjct: 533 DCTYNTLIRAHLRDGD------------LTASAKLIEEMKSCGFSADASSIKMVIDML 578



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 159/382 (41%), Gaps = 69/382 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT++ L++GFC  G I+ A +L ++M + G  P+V T   L+ GL   G +   L++ 
Sbjct: 392 NAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 451

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +++     D G      +  Y ++I+G+CK   V+   +LF  +  KG+  N +      
Sbjct: 452 EDLQKSKMDLG------IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMI 505

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCKK  L EAN LL  M + G  P   TY  L+  +   G +  +  L + M   GF 
Sbjct: 506 SGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFS 565

Query: 195 PDVFSYSVLIN-----------GYCKNFNVEEAMNVSREMILNGFKKI------FNEMKL 237
            D  S  ++I+            YC +   +   ++   + L+G +KI      F +M  
Sbjct: 566 ADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQDL---LELSGSEKIRLSSLTFVKMFP 622

Query: 238 CNVVPETFTCN-IFIDGL----------------------CKNGHVLEVMELFPT-LEIS 273
           CN +  +   N I   G+                       ++  VL   EL    LE +
Sbjct: 623 CNTITTSLNVNTIEARGMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDA 682

Query: 274 NCELFV--EIFNSLIRGCCKFGIFE---------IASELFNKLSCKNLVADVVAYNILIH 322
            C+L V  E+    +    + G             A EL  ++  + +  + + Y+ LI 
Sbjct: 683 ECDLMVDLELPTDAVHYAHRAGRMRRPGRKMTVVTAEELHKEMIQRGIAPNTITYSSLID 742

Query: 323 ALGKEGQIKKENYLLLSMEENG 344
              KE ++ + N +L  M   G
Sbjct: 743 GFCKENRLDEANQMLDLMVTKG 764



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+   I+T   ++N +C   K   A ++   + + G+ PD  +++ LI G      V EA
Sbjct: 108 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 167

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           + +   M+ NG +            P+  T N  ++G+C++G     ++L   +E  N +
Sbjct: 168 VVLVDRMVENGCQ------------PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVK 215

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             V  ++++I   C+ G  + A  LF ++  K + + VV YN L+  L K G+      L
Sbjct: 216 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 275

Query: 337 LLSMEENGCALDVDTFNTLMISFLQK 362
           L  M       +V TFN L+  F+++
Sbjct: 276 LKDMVSREIVPNVITFNVLLDVFVKE 301


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 132/390 (33%), Positives = 201/390 (51%), Gaps = 38/390 (9%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  AL  F   +   ++P N VT+ +LI G C  GN R A +L++ M    C PNV T 
Sbjct: 159 KIGEALHLFDKMVGEGFQP-NGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITY 217

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +T+I  L +   +N  L +  EM+       GI  PNV  Y S+I GLCK         L
Sbjct: 218 NTIIDCLFKDRQVNEALNIFSEMIAK-----GI-SPNVSTYNSIIHGLCKFSEWKHVATL 271

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM D  I  N +        LCK+  +  A+ ++++M+QRG+ P + TYT L++G+CL
Sbjct: 272 MNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCL 331

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM----------- 223
             +++ A  +FD+M RKG  P+V SYS LINGYCK   +++AM +  EM           
Sbjct: 332 RSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVT 391

Query: 224 ---ILNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
              +++G   +         F+EM     +P+  T  I +D LCK  H+ + M +   +E
Sbjct: 392 YNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIE 451

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            SN    ++ +N +I G C+ G  E A +LF+ LS K L  DV  Y I+I+ L  +G + 
Sbjct: 452 GSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLA 511

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +   L   M  +GC+ D  T+N +   FL+
Sbjct: 512 EATKLFREMNTDGCSPDDCTYNLITRGFLR 541



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 164/353 (46%), Gaps = 38/353 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   I +   P N  T+NS+I G C     +  + L+ +M      PNV    TL+
Sbjct: 233 ALNIFSEMIAKGISP-NVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLV 291

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             L + G + +      ++V+ M   G   +P+V  Y +L+DG C    +D+   +F  M
Sbjct: 292 DALCKEGMVTIA----HDVVDVMIQRG--VEPDVVTYTALMDGHCLRSEMDEADKVFDTM 345

Query: 127 KDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             KG     I+ +TL+   CK  ++ +A  L E M QR L P I TY  L++G C VG++
Sbjct: 346 VRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRL 405

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREMI 224
             AIALF  M   G +PD+ +Y +L++  CK  ++++AM +              S  ++
Sbjct: 406 RDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIV 465

Query: 225 LNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           ++G  ++         F+ +    + P+ +T  I I+GLC  G + E  +LF  +    C
Sbjct: 466 IDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGC 525

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
                 +N + RG  +      A +L  ++  +   AD     +++  L  +G
Sbjct: 526 SPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDG 578



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 142/325 (43%), Gaps = 26/325 (8%)

Query: 40  IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99
           I +A     +M      P+V     ++T +    + +  L L ++M     D  GI   +
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQM-----DSLGI-PSD 108

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           V+    +I+  C    VD    +  ++   G   +T         LC + K+ EA  L +
Sbjct: 109 VYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFD 168

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            M+  G  P   TY  L++G C VG    AI L  SM +K   P+V +Y+ +I+   K+ 
Sbjct: 169 KMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDR 228

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            V EA+N+  EMI  G            + P   T N  I GLCK      V  L   + 
Sbjct: 229 QVNEALNIFSEMIAKG------------ISPNVSTYNSIIHGLCKFSEWKHVATLMNEMV 276

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            S     V IF +L+   CK G+  IA ++ + +  + +  DVV Y  L+       ++ 
Sbjct: 277 DSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMD 336

Query: 332 KENYLLLSMEENGCALDVDTFNTLM 356
           + + +  +M   GCA +V +++TL+
Sbjct: 337 EADKVFDTMVRKGCAPNVISYSTLI 361


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  207 bits (526), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 135/424 (31%), Positives = 215/424 (50%), Gaps = 79/424 (18%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           VLG +M  G      Y P +  TFN+LIKG  +EG + +A  LV +M   GC+P+V T +
Sbjct: 145 VLGKVMKLG------YEP-DTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYN 197

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           +++ G+ R+G+ +L L L ++M           K +VF Y ++ID LC+D  +D    LF
Sbjct: 198 SIVNGICRSGDTSLALDLLRKMEERN------VKADVFTYSTIIDSLCRDGCIDAAISLF 251

Query: 124 MEMKDKGINANTL--------LCK-----------------------------------K 140
            EM+ KGI ++ +        LCK                                   +
Sbjct: 252 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            KL EAN L + M+ RG++P I TY  L++GYC+  +++ A  + D M R    PD+ ++
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371

Query: 201 SVLINGYCKNFNVEEAMNVSR--------------EMILNGF---------KKIFNEMKL 237
           + LI GYC    V++ M V R               +++ GF         +++F EM  
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS 431

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             V+P+  T  I +DGLC NG + + +E+F  L+ S  +L + ++ ++I G CK G  E 
Sbjct: 432 HGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVED 491

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A  LF  L CK +  +V+ Y ++I  L K+G + + N LL  MEE+G A +  T+NTL+ 
Sbjct: 492 AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIR 551

Query: 358 SFLQ 361
           + L+
Sbjct: 552 AHLR 555



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 161/358 (44%), Gaps = 52/358 (14%)

Query: 8   LMAFGSFIRRCYRPLNDVT-----FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           L    SF   C R  + ++     F   ++   ++    DA  L ++M      P++   
Sbjct: 32  LCTISSFFSSCERDFSSISNGNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDF 91

Query: 63  DTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
               + + RT   NL L   +++ +NG+         N++    +I+  C+         
Sbjct: 92  SRFFSAIARTKQFNLVLDFCKQLELNGIAH-------NIYTLNIMINCFCR--------- 135

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
                           C KT    A  +L  +M+ G  P   T+  L+ G  L GKV+ A
Sbjct: 136 ----------------CCKTCF--AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           + L D M   G  PDV +Y+ ++NG C++ +   A+++ R+M          E +  NV 
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKM----------EER--NVK 225

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
            + FT +  ID LC++G +   + LF  +E    +  V  +NSL+RG CK G +   + L
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 285

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              +  + +V +V+ +N+L+    KEG++++ N L   M   G + ++ T+NTLM  +
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGY 343



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 26/238 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF SLIKG+CM   + D  ++ + ++  G   N  T   L+ G  ++G + L  +L QE
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTL---- 136
           MV+      G+  P+V  YG L+DGLC +  +++  ++F +++    D GI   T     
Sbjct: 429 MVSH-----GVL-PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +CK  K+ +A  L   +  +G+ P + TYT +++G C  G ++ A  L   M   G  P+
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
             +Y+ LI  + ++ +            L    K+  EMK C    +  +  + ID L
Sbjct: 543 DCTYNTLIRAHLRDGD------------LTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 14/191 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT++ L++GFC  G I+ A +L ++M + G  P+V T   L+ GL   G +   L++ 
Sbjct: 402 NAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 461

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +++     D G      +  Y ++I+G+CK   V+   +LF  +  KG+  N +      
Sbjct: 462 EDLQKSKMDLG------IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMI 515

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCKK  L EAN LL  M + G  P   TY  L+  +   G +  +  L + M   GF 
Sbjct: 516 SGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFS 575

Query: 195 PDVFSYSVLIN 205
            D  S  ++I+
Sbjct: 576 ADASSIKMVID 586



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 21/280 (7%)

Query: 91  DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLCKKTKLVE 145
           DF  I   NV C+   +     D   D    LF EM         ++ +       +  +
Sbjct: 45  DFSSISNGNV-CFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQ 103

Query: 146 ANRLLELMMQRGLNPV---IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
            N +L+   Q  LN +   I+T   ++N +C   K   A ++   + + G+ PD  +++ 
Sbjct: 104 FNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNT 163

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI G      V EA+ +   M+ NG +            P+  T N  ++G+C++G    
Sbjct: 164 LIKGLFLEGKVSEAVVLVDRMVENGCQ------------PDVVTYNSIVNGICRSGDTSL 211

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            ++L   +E  N +  V  ++++I   C+ G  + A  LF ++  K + + VV YN L+ 
Sbjct: 212 ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            L K G+      LL  M       +V TFN L+  F+++
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  207 bits (526), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 140/442 (31%), Positives = 210/442 (47%), Gaps = 95/442 (21%)

Query: 15   IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
            ++R + P + VT  +L+KG  ME  I DA QL  +M   G   +  T   LI GL +   
Sbjct: 1008 LKRGFEP-DAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARK 1066

Query: 75   MNLTLKLHQEMV-NGMGD---------------------------FGGIYKPNVFCYGSL 106
              L +KLH++M  N  GD                            G    P+V  Y SL
Sbjct: 1067 TGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSL 1126

Query: 107  IDGLCKDRLVDQTKDLFMEMKDKGINANTL------------------------------ 136
            +DGLC+   + +  + F EM+ +GI+A+                                
Sbjct: 1127 MDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF 1186

Query: 137  -------------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
                         LCK+ K+ EA ++LELM  +G  P I TY  L+NG CLVG++  A  
Sbjct: 1187 SPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATK 1246

Query: 184  LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-------------- 229
            LF+S+A +G   +VFSY++LINGYCK+  ++EA     EM   G K              
Sbjct: 1247 LFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALC 1306

Query: 230  ---------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                     K+F EM+ C    +  T  + +DGLCKNGH+ E M+LF +++ +  +  +E
Sbjct: 1307 QSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIE 1366

Query: 281  IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            +F+ L+ G C+ G  E A + F+++S   L  D +AYNILI+ L  +G + +   LL  M
Sbjct: 1367 VFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQM 1426

Query: 341  EENGCALDVDTFNTLMISFLQK 362
            EE GC  D  TFN ++ + L++
Sbjct: 1427 EEKGCLPDSITFNVIIQNLLKE 1448



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 107/210 (50%), Gaps = 14/210 (6%)

Query: 154  MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
            ++RG  P   T T L+ G  +   +  A+ LFD M +KG + D  +Y +LING CK    
Sbjct: 1008 LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKT 1067

Query: 214  EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
              A+            K+  +MK  N   + FT  + ID LCK+G   E +++F  +  +
Sbjct: 1068 GLAI------------KLHEKMK-GNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGA 1114

Query: 274  NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
                 V +++SL+ G C+FG  + A E F ++  + + ADV  YN LIH L + G  K+ 
Sbjct: 1115 GILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEV 1174

Query: 334  NYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             + L  M + G + D  TF T++I  L KE
Sbjct: 1175 TWFLNLMVDRGFSPDAFTF-TILIDGLCKE 1203



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 14/210 (6%)

Query: 22   LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            LN  ++N LI G+C +  I +A +  ++M   G +P+  T +TLI  L ++G +    KL
Sbjct: 1258 LNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 1317

Query: 82   HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
              EM       G   K + +C   L+DGLCK+  +++  DLF  +K      N       
Sbjct: 1318 FVEMQT----CGQFLKLSTYCV--LLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSIL 1371

Query: 137  ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               +C+  KL EA +  + + + GL P    Y  L+NG C  G ++ A+ L   M  KG 
Sbjct: 1372 LDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGC 1431

Query: 194  MPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
            +PD  +++V+I    K   + EA+ +  EM
Sbjct: 1432 LPDSITFNVIIQNLLKENEIHEAIQLLEEM 1461



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 144/347 (41%), Gaps = 34/347 (9%)

Query: 21   PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT---GLRRTGNMNL 77
            P  D TFN L+      G       + +K+   G +P++ T + LI     LR       
Sbjct: 944  PCTD-TFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLR--AVGCG 1000

Query: 78   TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANT 135
                   +  G       ++P+     +L+ G+  +  +     LF EM  KG+  +A T
Sbjct: 1001 FGVFGGFLKRG-------FEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKT 1053

Query: 136  L------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                   LCK  K   A +L E  M+      +FTY  +++  C  G    A+ +F  M 
Sbjct: 1054 YGILINGLCKARKTGLAIKLHE-KMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMI 1112

Query: 190  RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
              G +PDV  YS L++G C+   ++EA+            + F EM+   +  + +T N 
Sbjct: 1113 GAGILPDVVVYSSLMDGLCRFGRLKEAL------------EFFKEMEGRGISADVYTYNS 1160

Query: 250  FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
             I GL + G   EV      +           F  LI G CK G    A ++   +  K 
Sbjct: 1161 LIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKG 1220

Query: 310  LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               D++ YN L++ L   GQ++    L  S+ + G  L+V ++N L+
Sbjct: 1221 KEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILI 1267



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 16/155 (10%)

Query: 15   IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
            ++ C + L   T+  L+ G C  G++ +A  L + +     +PN+     L+ G+ R G 
Sbjct: 1321 MQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGK 1380

Query: 75   MNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            +    K   E+  NG+       +P+   Y  LI+GLC   ++ +   L  +M++KG   
Sbjct: 1381 LEEAWKQFDEISKNGL-------EPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLP 1433

Query: 134  NTL--------LCKKTKLVEANRLLELMMQRGLNP 160
            +++        L K+ ++ EA +LLE M  R  +P
Sbjct: 1434 DSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSP 1468


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/424 (31%), Positives = 215/424 (50%), Gaps = 79/424 (18%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           VLG +M  G      Y P +  TFN+LIKG  +EG + +A  LV +M   GC+P+V T +
Sbjct: 145 VLGKVMKLG------YEP-DTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYN 197

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           +++ G+ R+G+ +L L L ++M           K +VF Y ++ID LC+D  +D    LF
Sbjct: 198 SIVNGICRSGDTSLALDLLRKMEERN------VKADVFTYSTIIDSLCRDGCIDAAISLF 251

Query: 124 MEMKDKGINANTL--------LCK-----------------------------------K 140
            EM+ KGI ++ +        LCK                                   +
Sbjct: 252 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            KL EAN L + M+ RG++P I TY  L++GYC+  +++ A  + D M R    PD+ ++
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371

Query: 201 SVLINGYCKNFNVEEAMNVSR--------------EMILNGF---------KKIFNEMKL 237
           + LI GYC    V++ M V R               +++ GF         +++F EM  
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS 431

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             V+P+  T  I +DGLC NG + + +E+F  L+ S  +L + ++ ++I G CK G  E 
Sbjct: 432 HGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVED 491

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A  LF  L CK +  +V+ Y ++I  L K+G + + N LL  MEE+G A +  T+NTL+ 
Sbjct: 492 AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIR 551

Query: 358 SFLQ 361
           + L+
Sbjct: 552 AHLR 555



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 160/355 (45%), Gaps = 52/355 (14%)

Query: 8   LMAFGSFIRRCYRPLNDVT-----FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           L    SF   C R  + ++     F   ++   ++    DA  L ++M      P++   
Sbjct: 32  LCTISSFFSSCERDFSSISNGNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDF 91

Query: 63  DTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
               + + RT   NL L   +++ +NG+         N++    +I+  C+         
Sbjct: 92  SRFFSAIARTKQFNLVLDFCKQLELNGIAH-------NIYTLNIMINCFCR--------- 135

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
                           C KT    A  +L  +M+ G  P   T+  L+ G  L GKV+ A
Sbjct: 136 ----------------CCKTCF--AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           + L D M   G  PDV +Y+ ++NG C++ +   A+++ R+M          E +  NV 
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKM----------EER--NVK 225

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
            + FT +  ID LC++G +   + LF  +E    +  V  +NSL+RG CK G +   + L
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 285

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +  + +V +V+ +N+L+    KEG++++ N L   M   G + ++ T+NTLM
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLM 340



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 14/221 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF SLIKG+CM   + D  ++ + ++  G   N  T   L+ G  ++G + L  +L QE
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTL---- 136
           MV+      G+  P+V  YG L+DGLC +  +++  ++F +++    D GI   T     
Sbjct: 429 MVSH-----GVL-PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +CK  K+ +A  L   +  +G+ P + TYT +++G C  G ++ A  L   M   G  P+
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
             +Y+ LI  + ++ ++  +  +  EM   GF    + +K+
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 21/280 (7%)

Query: 91  DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLCKKTKLVE 145
           DF  I   NV C+   +     D   D    LF EM         ++ +       +  +
Sbjct: 45  DFSSISNGNV-CFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQ 103

Query: 146 ANRLLELMMQRGLNPV---IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
            N +L+   Q  LN +   I+T   ++N +C   K   A ++   + + G+ PD  +++ 
Sbjct: 104 FNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNT 163

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI G      V EA+ +   M+ NG +            P+  T N  ++G+C++G    
Sbjct: 164 LIKGLFLEGKVSEAVVLVDRMVENGCQ------------PDVVTYNSIVNGICRSGDTSL 211

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            ++L   +E  N +  V  ++++I   C+ G  + A  LF ++  K + + VV YN L+ 
Sbjct: 212 ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            L K G+      LL  M       +V TFN L+  F+++
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A   F S   +  +P N +T+  +I G C +G++ +A+ L++KM   G  PN  T 
Sbjct: 488 KVEDAWNLFCSLPCKGVKP-NVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546

Query: 63  DTLITGLRRTGNMNLTLKLHQEM 85
           +TLI    R G++  + KL +EM
Sbjct: 547 NTLIRAHLRDGDLTASAKLIEEM 569


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 139/442 (31%), Positives = 211/442 (47%), Gaps = 95/442 (21%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           ++R + P + VT  +L+KG  ME  I DA QL  +M   G   +  T   LI GL +   
Sbjct: 69  LKRGFEP-DAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARK 127

Query: 75  MNLTLKLHQEMV-NGMGD---------------------------FGGIYKPNVFCYGSL 106
             L +KLH++M  N  GD                            G    P+V  Y SL
Sbjct: 128 TGLAIKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSL 187

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGINANTL------------------------------ 136
           +DGLC+   + +  + F EM+ +GI+A+                                
Sbjct: 188 MDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF 247

Query: 137 -------------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
                        LCK+ K+ EA ++LELM  +G  P I TY  L+NG CLVG++  A  
Sbjct: 248 SPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATK 307

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-------------- 229
           LF+S+A +G   +VFSY++LINGYCK+  ++EA  +  EM   G K              
Sbjct: 308 LFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALC 367

Query: 230 ---------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                    K+F EM+ C    +  T  + +DGLCKNGH+ E ++LF +++ +  +  +E
Sbjct: 368 QSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIE 427

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
           +F+ L+ G C+ G  E A + F+++S   L  D +AYNILI+ L  +G + +   LL  M
Sbjct: 428 VFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQM 487

Query: 341 EENGCALDVDTFNTLMISFLQK 362
           EE GC  D  TFN ++ + L++
Sbjct: 488 EEKGCLPDSITFNVIIQNLLKE 509



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 105/210 (50%), Gaps = 14/210 (6%)

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           ++RG  P   T T L+ G  +   +  A+ LFD M  KG   D  +Y +LING CK    
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
             A+            K+  +MK  N   + FT  + ID LCK+G   E +++F  +  +
Sbjct: 129 GLAI------------KLHEKMK-GNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGA 175

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
                V +++SL+ G C+FG  + A E F ++  + + ADV  YN LIH L + G  K+ 
Sbjct: 176 GILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEV 235

Query: 334 NYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            + L  M + G + D  TF T++I  L KE
Sbjct: 236 TWFLNLMVDRGFSPDAFTF-TILIDGLCKE 264



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 14/210 (6%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  ++N LI G+C +  I +A +L ++M   G +P+  T +TLI  L ++G +    KL
Sbjct: 319 LNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 378

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EM       G   K + +C   L+DGLCK+  +++  DLF  +K      N       
Sbjct: 379 FVEMQT----CGQFLKLSTYCV--LLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSIL 432

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              +C+  KL EA +  + + + GL P    Y  L+NG C  G ++ A+ L   M  KG 
Sbjct: 433 LDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGC 492

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           +PD  +++V+I    K   + EA+ +  EM
Sbjct: 493 LPDSITFNVIIQNLLKENEIHEAIQLLEEM 522



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 16/155 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           ++ C + L   T+  L+ G C  G++ +A  L + +     +PN+     L+ G+ R G 
Sbjct: 382 MQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGK 441

Query: 75  MNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
           +    K   E+  NG+       +P+   Y  LI+GLC   ++ +   L  +M++KG   
Sbjct: 442 LEEAWKQFDEISKNGL-------EPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLP 494

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNP 160
           +++        L K+ ++ EA +LLE M  R  +P
Sbjct: 495 DSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSP 529


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 206/421 (48%), Gaps = 73/421 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A    G  ++  Y+P +  TF +LI+G C+EG I +A QL  KM   G +P+V T  TLI
Sbjct: 108 AFSVLGDILKLGYQP-STATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLI 166

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + GN +  ++  + M           +P V  Y ++ID LCKDR + +   LF +M
Sbjct: 167 NGLCKVGNTSTAIRFLRSMEQRNC------RPTVVVYSTIIDSLCKDRQLTEALSLFSDM 220

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             KGI+ N                                             LCK+  +
Sbjct: 221 LAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMV 280

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           V+A+ ++++M+Q  L P + TY  L++G+CL  ++   + +FD+M RKG +P V SY+ L
Sbjct: 281 VKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTL 340

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNV 240
           INGYCK   +++AM +  EM   G                          +F+EM +   
Sbjct: 341 INGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQ 400

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           +P+  T  I  D LCKN  + E M L   +E +N +  + I++ ++ G C+ G  E A +
Sbjct: 401 IPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARD 460

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF+KLS K L  DV  Y I+I+ L ++G + + + L   M+ENGC+ +  T+N +   FL
Sbjct: 461 LFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFL 520

Query: 361 Q 361
           +
Sbjct: 521 R 521



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 126/267 (47%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  +  L+  + + +       L+ +M   GI  NT          C   +L  A  +
Sbjct: 52  PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 111

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +++ G  P   T+T L+ G C+ GK+  A+ LFD M  +GF PDV +Y  LING CK
Sbjct: 112 LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 171

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
             N   A+   R M          E + C   P     +  ID LCK+  + E + LF  
Sbjct: 172 VGNTSTAIRFLRSM----------EQRNCR--PTVVVYSTIIDSLCKDRQLTEALSLFSD 219

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +           ++SLI G C  G ++ A  LF  +  + ++ D + +N L+ AL KEG 
Sbjct: 220 MLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGM 279

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           + K +Y++  M ++    DV T+N+LM
Sbjct: 280 VVKAHYVVDVMIQSDLKPDVVTYNSLM 306



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 15/228 (6%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
            F + +R+   P + +++ +LI G+C    +  A  L ++M+  G  P+  T +TLI GL
Sbjct: 321 VFDTMVRKGCVP-SVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGL 379

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-- 127
              G +   + L  EMV     +G I  P++  Y  L D LCK+  + +   L   ++  
Sbjct: 380 CHVGRLRDAIALFHEMVV----YGQI--PDLVTYRILFDYLCKNHRLAEAMVLLKVIEGT 433

Query: 128 --DKGINANTL----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
             D  I+  ++    +C+  +L  A  L   +  +GL+P + TYT ++NG C  G +  A
Sbjct: 434 NLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEA 493

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
             LF  M   G  P+  +Y+++  G+ +N     A+ + +EM+  GF 
Sbjct: 494 SKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFS 541


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 202/386 (52%), Gaps = 38/386 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A  A    ++  ++P +  TF +LI+G C+EG I +A  L  KM   G +PNV T  TLI
Sbjct: 99  AFSALAKILKLGHQP-DATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLI 157

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL +   +     +  EM+       GI  PN+  Y SLI GLCK         L  EM
Sbjct: 158 NGLCKDRQVTEAFNIFSEMITK-----GI-SPNIVTYNSLIHGLCKLCEWKHVTTLMNEM 211

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            D  I  +          LCK+  + EA+ ++++M+ RG+ P + TY  L++G+CL  +V
Sbjct: 212 VDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEV 271

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
           +VA+ +FD+M  K  + +V SY+ LINGYCK  +V++AM +  EM              +
Sbjct: 272 DVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTL 331

Query: 225 LNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           ++G   +         F+EM     +P+  T     D LCKN H+ + M L   +E SN 
Sbjct: 332 IHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNW 391

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           +  ++I+ +++ G C+ G  E A +LF+ LS K L  +V  YNI+IH L K+G + + + 
Sbjct: 392 DPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASK 451

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQ 361
           L   M +NGC+ +  T+N +   FL+
Sbjct: 452 LFSEMNKNGCSPNDCTYNLITRGFLR 477



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 176/354 (49%), Gaps = 50/354 (14%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +  T N LI  FC    +  A  ++ K+   G +P+V T  TL+ GL +         
Sbjct: 613 PPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKM-------- 664

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
               +  G+        P++F Y SLI  LC          L  EM +  I  N +    
Sbjct: 665 ----ITKGIS-------PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFST 713

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK+  +  A+ ++++M++RG+ P + TYT L++G+CL  +++ A+ +FD+M  KG
Sbjct: 714 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 773

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------------------- 230
            +P+V SY++LINGYC+   +++AM +  +M L G                         
Sbjct: 774 CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAI 833

Query: 231 -IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            +F+EM     +P+  T  I +D LCKN H+ E M L   +E SN +  + ++N  I G 
Sbjct: 834 ALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGM 893

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           C+ G  E A +LF+ LS K L  DV  YNI+IH L K G + + N L   M+EN
Sbjct: 894 CRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDEN 947



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 146/326 (44%), Gaps = 58/326 (17%)

Query: 56  RPNVTTCD--TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
           +P  +T D   L+T + +T + +  L L ++M     D  GI  P+V+    +I+ LC  
Sbjct: 40  QPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQM-----DSFGI-PPDVYTLAIVINSLCHL 93

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
             VD               A + L K  KL             G  P   T+T L+ G C
Sbjct: 94  NRVDF--------------AFSALAKILKL-------------GHQPDATTFTTLIRGLC 126

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK--- 230
           + GK+  A+ LFD M  +GF P+V +Y  LING CK+  V EA N+  EMI  G      
Sbjct: 127 VEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIV 186

Query: 231 --------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                               + NEM    ++P+ FT N  +D LCK G V E  ++   +
Sbjct: 187 TYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMM 246

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                E  V  +N+L+ G C     ++A ++F+ +  K+ VA+V++YN LI+   K   +
Sbjct: 247 IHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSV 306

Query: 331 KKENYLLLSMEENGCALDVDTFNTLM 356
            K  YL   M       +  T+NTL+
Sbjct: 307 DKAMYLFEEMSRQELTPNTVTYNTLI 332



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 159/347 (45%), Gaps = 35/347 (10%)

Query: 10  AFGSFIR--RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A  SF R    + P + V F  L+       +      L  +M +FG  P+V T + LI 
Sbjct: 565 ALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILIN 624

Query: 68  G---LRRTG-NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
               LRR G   ++  KL +     +G     ++P+V  YG+L++GLCK      + D+F
Sbjct: 625 SFCHLRRLGYAFSVLAKLLK-----LG-----FQPDVVTYGTLMNGLCKMITKGISPDIF 674

Query: 124 MEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
               +  I+A   LC   +      LL  M+   + P +  ++ +++  C  G + +A  
Sbjct: 675 T--YNSLIHA---LCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHD 729

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           + D M ++G  PDV +Y+ L++G+C    ++EA+            K+F+ M     VP 
Sbjct: 730 VVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAV------------KVFDTMVHKGCVPN 777

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             + NI I+G C+   + + M L   + +         +N+LI G C  G  + A  LF+
Sbjct: 778 VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFH 837

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           ++     + D+V Y IL+  L K   + +   LL ++E  G  LD D
Sbjct: 838 EMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIE--GSNLDAD 882



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 14/215 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++N+LI G+C   ++  A  L ++M+     PN  T +TLI GL   G +   + L 
Sbjct: 289 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLF 348

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTL-- 136
            EMV      G I  P++  Y +L D LCK+R +D+   L   ++    D  I   T   
Sbjct: 349 HEMVAR----GQI--PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTIL 402

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             +C+  +L +A  L   +  +GL P ++TY  +++G C  G +  A  LF  M + G  
Sbjct: 403 DGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCS 462

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           P+  +Y+++  G+ +N      + +  EM+  GF 
Sbjct: 463 PNDCTYNLITRGFLRNNEALRTIELLEEMLARGFS 497



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 23/237 (9%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L EA      M+ +   P    +  LL         +  ++L   M   G  PDV++ ++
Sbjct: 26  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 85

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCN 239
           +IN  C    V+ A +   +++  G +                        +F++M    
Sbjct: 86  VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 145

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
             P   T    I+GLCK+  V E   +F  +        +  +NSLI G CK   ++  +
Sbjct: 146 FQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT 205

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            L N++    ++ DV   N ++ AL KEG + + + ++  M   G   +V T+N LM
Sbjct: 206 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALM 262



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 29/149 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT---------- 72
           + VT+N+LI G C  G ++ A  L  +M   G  P++ T   L+  L +           
Sbjct: 812 DTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLL 871

Query: 73  -----GNMNLTLKLHQEMVNGMGDFGGI--------------YKPNVFCYGSLIDGLCKD 113
                 N++  + ++   ++GM   G +               +P+V  Y  +I GLCK 
Sbjct: 872 KAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKR 931

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            L+D+   LF +M +  I +N+   +  K
Sbjct: 932 GLLDEANKLFRKMDENDIWSNSTSSRNQK 960


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 217/475 (45%), Gaps = 127/475 (26%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  ++P +  TF +LI+G C+EG I +A  L  KM   G RP+V T  TLI
Sbjct: 115 AFSVLAKILKLGHQP-DTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLI 173

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + GN +  ++L   MV          +PNVF Y ++ID LCKDR V +  +LF EM
Sbjct: 174 NGLCKVGNTSAAIRLLGSMVQKNC------QPNVFAYNTIIDSLCKDRQVTEAFNLFSEM 227

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             KGI+ +                                             LCK+ K+
Sbjct: 228 VTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKV 287

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA+ +++ M+QRG+ P + TYT L++G+CL+ +++ A+ +FD+M  KG MP+V SY+ L
Sbjct: 288 TEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTL 347

Query: 204 INGY-------------------CKNFNVEEAMNVSREMI--------------LNGFKK 230
           INGY                   C   N++EA+ V   M+              +NG+ K
Sbjct: 348 INGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCK 407

Query: 231 I--------------------------------------------FNEMKLCNVVPETFT 246
           I                                            F+EM  C+ +P   T
Sbjct: 408 IQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVT 467

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
             I +D LCKN ++ E M L   +E SN +  +++ N  I G C+ G  E A +LF+ LS
Sbjct: 468 YRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLS 527

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            K L  DV  Y+I+I+ L + G + + + L   M+ENGC L+   +NT+   FL+
Sbjct: 528 SKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLR 582



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 164/366 (44%), Gaps = 46/366 (12%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+FN+++   C EG + +A  +V KM   G  PNV T   L+ G      M+  +K+   
Sbjct: 272 VSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDT 331

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---CKK 140
           MV  G         PNV  Y +LI+G CK           ++  DK I+   L+   C  
Sbjct: 332 MVCKGC-------MPNVISYNTLINGYCK-----------IQRIDKAIHYTXLMDXXCCY 373

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
             + EA ++ + M+ +G  P + +Y  L+NGYC + +++ A+ LF  M R+  +PD  +Y
Sbjct: 374 LNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTY 433

Query: 201 SVLINGYCKNFNVEEAMNVSREMI-----------------------LNGFKKIFNEMKL 237
           S LI+G C    +++A+ +  EM+                       L     +   ++ 
Sbjct: 434 STLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEG 493

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
            N+ P+    NI IDG+C+ G +    +LF  L     +  V  ++ +I G C+ G+ + 
Sbjct: 494 SNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDE 553

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           AS+LF ++       +   YN +     +  +  +   LL  M   G + D  T  TL +
Sbjct: 554 ASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTM-TLFV 612

Query: 358 SFLQKE 363
             L  +
Sbjct: 613 KMLSDD 618



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 15/238 (6%)

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQR---GLNPVIFTYTPLLNGYCLVGKV 178
           L M+     ++ N LL    K+   + LL L  Q    G+ P I+T   L+N +C + +V
Sbjct: 53  LRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRV 112

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A ++   + + G  PD  +++ LI G C    + EA+++  +MI  GF+         
Sbjct: 113 GFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFR--------- 163

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P+  T    I+GLCK G+    + L  ++   NC+  V  +N++I   CK      A
Sbjct: 164 ---PDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             LF+++  K +  D+  YN LIHAL    + K    LL  M ++    DV +FNT++
Sbjct: 221 FNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVV 278



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 14/223 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++N+LI G+C    I  A  L  +M      P+  T  TLI GL     +   + L 
Sbjct: 394 NVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALF 453

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTL-- 136
            EMV           PN+  Y  L+D LCK+R + +   L   ++    D  I  N +  
Sbjct: 454 HEMV------ACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAI 507

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             +C+  +L  A  L   +  +GL P ++TY+ ++NG C  G ++ A  LF  M   G  
Sbjct: 508 DGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCT 567

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
            +   Y+ +  G+ +N     A+ + +EM+  GF    + M L
Sbjct: 568 LNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTL 610



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 12/182 (6%)

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           ++ AI+ F+ M R    P    ++ L+    K  +    +++S +M   G          
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFG---------- 91

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             + P  +T +I I+  C    V     +   +     +     F +LIRG C  G    
Sbjct: 92  --IPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGE 149

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A  LF+K+  +    DVV Y  LI+ L K G       LL SM +  C  +V  +NT++ 
Sbjct: 150 ALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIID 209

Query: 358 SF 359
           S 
Sbjct: 210 SL 211


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 132/424 (31%), Positives = 213/424 (50%), Gaps = 79/424 (18%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           VLG +M  G      Y P +  TFN+LI G C+EG +  A  LV +M   GC+P++ T +
Sbjct: 145 VLGKVMKLG------YEP-DTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYN 197

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           +++ G+ R+G+ +L   + ++M           K +VF Y ++ID LC+D  +D    LF
Sbjct: 198 SIVNGICRSGDTSLAFDMLRKMEERN------VKADVFTYSTIIDSLCRDGCIDAAISLF 251

Query: 124 MEMKDKGINANTL--------LCK-----------------------------------K 140
            EM+ KGI ++ +        LCK                                   +
Sbjct: 252 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            KL EAN L + M+ RG++P I TY  L++GYC+  +++ A  + D M R    PD+ ++
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371

Query: 201 SVLINGYCKNFNVEEAMNVSR--------------EMILNGF---------KKIFNEMKL 237
           + LI GYC    V++ M V R               +++ GF         +++F EM  
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS 431

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             V+P+  T  I +DGLC NG + + +E+F  L+ S  +L + ++ ++I G CK G  E 
Sbjct: 432 HGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVED 491

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A  LF  L CK +  +V+ Y ++I  L K+G + + N LL  MEE+G A +  T+NTL+ 
Sbjct: 492 AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIR 551

Query: 358 SFLQ 361
           + L+
Sbjct: 552 AHLR 555



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 162/358 (45%), Gaps = 52/358 (14%)

Query: 8   LMAFGSFIRRCYRPLNDVT-----FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           L    SF+  C R  + +T     F   ++   ++    DA  L ++M      P +   
Sbjct: 32  LCTISSFLSSCERDFSSITNGNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPGLVDF 91

Query: 63  DTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
               + + RT   NL L   +++ +NG+         N++    +I+  C+         
Sbjct: 92  SRFFSAIARTKQFNLVLDFCKQLELNGIAH-------NIYTLNIMINCFCR--------- 135

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
                           C KT    A  +L  +M+ G  P   T+  L+NG CL GKV+ A
Sbjct: 136 ----------------CCKTCF--AYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKA 177

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           + L D M   G  PD+ +Y+ ++NG C++ +   A ++ R+M          E +  NV 
Sbjct: 178 VVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKM----------EER--NVK 225

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
            + FT +  ID LC++G +   + LF  +E    +  V  +NSL+RG CK G +   + L
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 285

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              +  + +V +V+ +N+L+    KEG++++ N L   M   G + ++ T+NTLM  +
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGY 343



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 14/221 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF SLIKG+CM   + D  ++ + ++  G   N  T   L+ G  ++G + L  +L QE
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTL---- 136
           MV+      G+  P+V  YG L+DGLC +  +++  ++F +++    D GI   T     
Sbjct: 429 MVSH-----GVL-PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +CK  K+ +A  L   +  +G+ P + TYT +++G C  G ++ A  L   M   G  P+
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
             +Y+ LI  + ++ ++  +  +  EM   GF    + +K+
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 123/280 (43%), Gaps = 21/280 (7%)

Query: 91  DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLCKKTKLVE 145
           DF  I   NV C+   +     D   D    LF EM         ++ +       +  +
Sbjct: 45  DFSSITNGNV-CFRERLRSGIVDIKKDDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQ 103

Query: 146 ANRLLELMMQRGLNPV---IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
            N +L+   Q  LN +   I+T   ++N +C   K   A ++   + + G+ PD  +++ 
Sbjct: 104 FNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNT 163

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LING C    V +A+ +   M+ NG +            P+  T N  ++G+C++G    
Sbjct: 164 LINGLCLEGKVSKAVVLVDRMVENGCQ------------PDMVTYNSIVNGICRSGDTSL 211

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             ++   +E  N +  V  ++++I   C+ G  + A  LF ++  K + + VV YN L+ 
Sbjct: 212 AFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            L K G+      LL  M       +V TFN L+  F+++
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311



 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A   F S   +  +P N +T+  +I G C +G++ +A+ L++KM   G  PN  T 
Sbjct: 488 KVEDAWNLFCSLPCKGVKP-NVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546

Query: 63  DTLITGLRRTGNMNLTLKLHQEM 85
           +TLI    R G++  + KL +EM
Sbjct: 547 NTLIRAHLRDGDLTASAKLIEEM 569


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 134/421 (31%), Positives = 214/421 (50%), Gaps = 73/421 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  ++P N  TFN+LI+G C+EG I +   L  KM   G +PNV T  TLI
Sbjct: 113 AFSVLAKILKLGHQP-NIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLI 171

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G+ +  ++L + M  G        +P+V  Y S+ID LCKDR V Q  +LF EM
Sbjct: 172 NGLCKVGSTSAAIRLLRSMEQGNC------QPDVVVYTSIIDSLCKDRQVTQAFNLFSEM 225

Query: 127 KDKGINA-----NTL--------------------------------------LCKKTKL 143
             +GI+      N+L                                      LCK+ K+
Sbjct: 226 IHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKV 285

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           +EA+ ++++M++RG+ P + TY  L++G+CL  +++ A+ +FD+M  KGF PDV SYS L
Sbjct: 286 MEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTL 345

Query: 204 INGYCKNFNVEEAMNVSREM--------------ILNGFKKI---------FNEMKLCNV 240
           INGYCK   +E+AM +  EM              +++G   +         F+EM     
Sbjct: 346 INGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQ 405

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           +P+  +  I +D LCKN  + E + L   +E SN +  ++I+  +I G C+ G  E A +
Sbjct: 406 IPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARD 465

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF+ LS K L  +V  Y I+I+ L ++G + + + L   M+  G + +  T+N +   FL
Sbjct: 466 LFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFL 525

Query: 361 Q 361
           +
Sbjct: 526 R 526



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 152/372 (40%), Gaps = 58/372 (15%)

Query: 10  AFGSFIR--RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A  SF R    + P +   F  L+       +      L  +M +FG  PN+ T + LI 
Sbjct: 43  ALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILIN 102

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
                  +     +  +++  +G     ++PN+  + +LI GLC +              
Sbjct: 103 SFCHLQRLGFAFSVLAKILK-LG-----HQPNIATFNTLIRGLCVE-------------- 142

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                         K+ E   L + M+  G  P + TY  L+NG C VG  + AI L  S
Sbjct: 143 -------------GKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRS 189

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK----------------- 230
           M +    PDV  Y+ +I+  CK+  V +A N+  EMI  G                    
Sbjct: 190 MEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCE 249

Query: 231 ------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                 + NEM    ++P     +  +D LCK G V+E  ++   +     E  V  +N+
Sbjct: 250 WKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNA 309

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           L+ G C     + A ++F+ + CK    DVV+Y+ LI+   K  +I+K  YL   M    
Sbjct: 310 LMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKE 369

Query: 345 CALDVDTFNTLM 356
              +  T++TLM
Sbjct: 370 LIPNTVTYSTLM 381



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 15/231 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F + + + + P + V++++LI G+C    I  A  L ++M      PN  T  TL+
Sbjct: 323 AVKVFDTMVCKGFAP-DVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLM 381

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   G +   + L  EMV      G I  P+   Y  L+D LCK+R +D+   L   +
Sbjct: 382 HGLCHVGRLQDAIALFHEMVTR----GQI--PDFVSYCILLDYLCKNRRLDEAIALLKAI 435

Query: 127 K----DKGINANTL----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           +    D  I   T+    +C+  +L  A  L   +  +GL+P ++TYT ++NG C  G +
Sbjct: 436 EGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLL 495

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
             A  LF  M RKG+ P+  +Y+++  G+ +N      + + +EM+  GF 
Sbjct: 496 AEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFS 546



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 12/179 (6%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A++ F+ M      P +  ++ L+    K  +    +++S +M   G            +
Sbjct: 43  ALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFG------------I 90

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P  +T NI I+  C    +     +   +     +  +  FN+LIRG C  G       
Sbjct: 91  PPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLH 150

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           LF+K+  +    +VV Y  LI+ L K G       LL SME+  C  DV  + +++ S 
Sbjct: 151 LFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 209


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 134/421 (31%), Positives = 214/421 (50%), Gaps = 73/421 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  ++P N  TFN+LI+G C+EG I +   L  KM   G +PNV T  TLI
Sbjct: 122 AFSVLAKILKLGHQP-NIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLI 180

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G+ +  ++L + M  G        +P+V  Y S+ID LCKDR V Q  +LF EM
Sbjct: 181 NGLCKVGSTSAAIRLLRSMEQGNC------QPDVVVYTSIIDSLCKDRQVTQAFNLFSEM 234

Query: 127 KDKGINA-----NTL--------------------------------------LCKKTKL 143
             +GI+      N+L                                      LCK+ K+
Sbjct: 235 IHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKV 294

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           +EA+ ++++M++RG+ P + TY  L++G+CL  +++ A+ +FD+M  KGF PDV SYS L
Sbjct: 295 MEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTL 354

Query: 204 INGYCKNFNVEEAMNVSREM--------------ILNGFKKI---------FNEMKLCNV 240
           INGYCK   +E+AM +  EM              +++G   +         F+EM     
Sbjct: 355 INGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQ 414

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           +P+  +  I +D LCKN  + E + L   +E SN +  ++I+  +I G C+ G  E A +
Sbjct: 415 IPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARD 474

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF+ LS K L  +V  Y I+I+ L ++G + + + L   M+  G + +  T+N +   FL
Sbjct: 475 LFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFL 534

Query: 361 Q 361
           +
Sbjct: 535 R 535



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 152/372 (40%), Gaps = 58/372 (15%)

Query: 10  AFGSFIR--RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A  SF R    + P +   F  L+       +      L  +M +FG  PN+ T + LI 
Sbjct: 52  ALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILIN 111

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
                  +     +  +++  +G     ++PN+  + +LI GLC +              
Sbjct: 112 SFCHLQRLGFAFSVLAKILK-LG-----HQPNIATFNTLIRGLCVE-------------- 151

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                         K+ E   L + M+  G  P + TY  L+NG C VG  + AI L  S
Sbjct: 152 -------------GKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRS 198

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK----------------- 230
           M +    PDV  Y+ +I+  CK+  V +A N+  EMI  G                    
Sbjct: 199 MEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCE 258

Query: 231 ------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                 + NEM    ++P     +  +D LCK G V+E  ++   +     E  V  +N+
Sbjct: 259 WKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNA 318

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           L+ G C     + A ++F+ + CK    DVV+Y+ LI+   K  +I+K  YL   M    
Sbjct: 319 LMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKE 378

Query: 345 CALDVDTFNTLM 356
              +  T++TLM
Sbjct: 379 LIPNTVTYSTLM 390



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 15/231 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F + + + + P + V++++LI G+C    I  A  L ++M      PN  T  TL+
Sbjct: 332 AVKVFDTMVCKGFAP-DVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLM 390

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   G +   + L  EMV      G I  P+   Y  L+D LCK+R +D+   L   +
Sbjct: 391 HGLCHVGRLQDAIALFHEMVTR----GQI--PDFVSYCILLDYLCKNRRLDEAIALLKAI 444

Query: 127 K----DKGINANTL----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           +    D  I   T+    +C+  +L  A  L   +  +GL+P ++TYT ++NG C  G +
Sbjct: 445 EGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLL 504

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
             A  LF  M RKG+ P+  +Y+++  G+ +N      + + +EM+  GF 
Sbjct: 505 AEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFS 555



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 12/179 (6%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A++ F+ M      P +  ++ L+    K  +    +++S +M   G            +
Sbjct: 52  ALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFG------------I 99

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P  +T NI I+  C    +     +   +     +  +  FN+LIRG C  G       
Sbjct: 100 PPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLH 159

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           LF+K+  +    +VV Y  LI+ L K G       LL SME+  C  DV  + +++ S 
Sbjct: 160 LFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 218


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/424 (31%), Positives = 214/424 (50%), Gaps = 79/424 (18%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           VLG +M  G      Y P +  TFN+LI G C+E  + +A  LV +M   GC+PNV T +
Sbjct: 122 VLGKVMKLG------YEP-DTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYN 174

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           +++ G+ ++G+ +L L L ++M     D   + K +VF Y ++ID LC+D  +D    LF
Sbjct: 175 SIVNGICKSGDTSLALDLLRKM-----DERNV-KADVFTYSTIIDSLCRDGCIDAAISLF 228

Query: 124 MEMKDKGINANTL--------LCK-----------------------------------K 140
            EM+ KGI ++ +        LCK                                   +
Sbjct: 229 KEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKE 288

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            KL EAN L + M+ +G++P   TY  L++GYC+  +++ A  + D M R    PD+ ++
Sbjct: 289 GKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTF 348

Query: 201 SVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMKL 237
           + LI GYCK   V+E M + R++              ++ GF         +++F EM  
Sbjct: 349 TSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVS 408

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             V+P+  T  I +DGLC NG + + +E+F  L+ S   L + ++  +I G CK G  E 
Sbjct: 409 LGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVED 468

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A  LF  L CK +  +V+ Y ++I  L K+G + + N LL  MEE+G   +  T+NTL+ 
Sbjct: 469 AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIR 528

Query: 358 SFLQ 361
           + L+
Sbjct: 529 AHLR 532



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 131/270 (48%), Gaps = 20/270 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  +     G+   +  +   D   +M+  GI  N           C+  K   A  +
Sbjct: 63  PSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 122

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +M+ G  P   T+  L+NG CL  KV+ A+ L   M   G  P+V +Y+ ++NG CK
Sbjct: 123 LGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICK 182

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           + +   A+++ R+M         +E    NV  + FT +  ID LC++G +   + LF  
Sbjct: 183 SGDTSLALDLLRKM---------DER---NVKADVFTYSTIIDSLCRDGCIDAAISLFKE 230

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +E    +  +  +NSL+ G CK G +    +L   ++ + ++ +V+ +N+LI    KEG+
Sbjct: 231 METKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGK 290

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +++ N L   M   G + +  T+N+LM  +
Sbjct: 291 LQEANELYKEMITKGISPNTITYNSLMDGY 320



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 120/269 (44%), Gaps = 20/269 (7%)

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTLLCKKTKLVEANRLLELMMQ----- 155
           CYG  +     D   D   DLF EM + + + +     +    V + +   L++      
Sbjct: 32  CYGERLRSGIVDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKM 91

Query: 156 --RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
              G+   I+T   ++N +C   K   A ++   + + G+ PD  +++ LING C    V
Sbjct: 92  ELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKV 151

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
            EA+ +   M+ NG +            P   T N  ++G+CK+G     ++L   ++  
Sbjct: 152 SEAVVLVARMVENGCQ------------PNVVTYNSIVNGICKSGDTSLALDLLRKMDER 199

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
           N +  V  ++++I   C+ G  + A  LF ++  K + + +V YN L+  L K G+    
Sbjct: 200 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDG 259

Query: 334 NYLLLSMEENGCALDVDTFNTLMISFLQK 362
             LL  M       +V TFN L+  F+++
Sbjct: 260 VQLLKDMTSRKIIPNVITFNVLIDVFVKE 288



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 14/191 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT++ L++GFC  G +  A +L ++M + G  P+V T   L+ GL   G +   L++ 
Sbjct: 379 NTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIF 438

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +++     +       ++  Y  +I+G+CK   V+   +LF  +  KG+  N +      
Sbjct: 439 EDLQKSKMNL------DIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMI 492

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCKK  L EAN LL  M + G  P   TY  L+  +   G +  +  L + M   GF 
Sbjct: 493 SGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFS 552

Query: 195 PDVFSYSVLIN 205
            D  S  ++I+
Sbjct: 553 ADASSIKMVID 563



 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 12/117 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM---NLT 78
           L+ V +  +I+G C  G + DA  L   +   G +PNV T   +I+GL + G++   N+ 
Sbjct: 448 LDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANIL 507

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           L+  +E  N         +PN   Y +LI    +D  +  +  L  EMK  G +A+ 
Sbjct: 508 LRKMEEDGN---------EPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADA 555


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 196/403 (48%), Gaps = 72/403 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN+L+ G C +  I DA +L  +M   G  P+V T  T+I GL + GN  + L+L ++
Sbjct: 11  VTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKK 70

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     +  G  KPNV  Y ++ID LCKDRLV +  D F EM  +GI  +          
Sbjct: 71  M-----EEKGC-KPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHG 124

Query: 137 -----------------------------------LCKKTKLVEANRLLELMMQRGLNPV 161
                                              LCKK  + EA  + E M ++GL P 
Sbjct: 125 FCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPD 184

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           ++TY  L++GYC   +++ A  LF+ M RKG  P+V SY++LING+CK+  ++EA  +  
Sbjct: 185 VYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLA 244

Query: 222 EM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           EM              ++ GF         +++  EM    ++P   T +I +DGLCK+G
Sbjct: 245 EMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHG 304

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           H+ E  EL   ++ S  E  + I+  LI G C FG  E A ELF+ L  K +   VV Y 
Sbjct: 305 HLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYT 364

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           ++I  L K G   +   L   M  NGC  +  T+N ++  FL+
Sbjct: 365 VMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLR 407



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 186/414 (44%), Gaps = 61/414 (14%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +K++ A+  F   ++  + P + +T++++I G C  GN   A QL+KKM   GC+PNV  
Sbjct: 24  AKIMDAVKLFDEMVKMGHEP-DVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVA 82

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMV---------------NGMGDFGGIYK--------- 97
            +T+I  L +   +   +    EMV               +G  + G + +         
Sbjct: 83  YNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMV 142

Query: 98  -----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLV 144
                PN   +  LIDGLCK R++ +   +F  M +KG+  +           C ++++ 
Sbjct: 143 ERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMD 202

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           EA +L  +M ++G  P + +Y  L+NG+C  G+++ A  L   M+ K   PD+F+YS L+
Sbjct: 203 EAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLM 262

Query: 205 NGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEMKLCNVV 241
            G+C+    +EA  + +EM              +L+G  K         +   M+   + 
Sbjct: 263 RGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIE 322

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P  F   I I+G+C  G +    ELF  L +   +  V  +  +I G  K G+   A EL
Sbjct: 323 PNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACEL 382

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           F +++    + +   YN++I    + G       L+  M   G + D  TF  L
Sbjct: 383 FREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRML 436



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 114/267 (42%), Gaps = 58/267 (21%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M + GL P + T+  LL+G C   K+  A+ LFD M + G  PDV +YS +ING CK  N
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 213 -----------------------------------VEEAMNVSREM-------------- 223
                                              V EAM+   EM              
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 224 ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           IL+GF           +F +M   NV+P   T  I IDGLCK   + E   +F T+    
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            E  V  +N+L+ G C     + A +LFN +  K    +V +YNILI+   K G+I +  
Sbjct: 181 LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAK 240

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQ 361
            LL  M       D+ T++TLM  F Q
Sbjct: 241 GLLAEMSHKSLTPDIFTYSTLMRGFCQ 267


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 131/409 (32%), Positives = 199/409 (48%), Gaps = 73/409 (17%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N VTFN+LI G  +     +A  L+ +M   GC+P++ T   ++ GL + G+ +L 
Sbjct: 182 YQP-NTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
             L  +M  G        +P V  Y ++IDGLCK++ +D   +LF EM+ KGI  N +  
Sbjct: 241 FILLNKMEQGK------LEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 137 ------LC-----------------------------------KKTKLVEANRLLELMMQ 155
                 LC                                   K+ KLVEA +L + M++
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R ++P I TY+ L+NG+C+  +++ A  +F+ M  K   PDV SYS LI G+CK   V+E
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDE 414

Query: 216 AMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFID 252
            M + REM   G                        ++IF EM    V P   T N  +D
Sbjct: 415 GMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLD 474

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCKNG + + M +F  L+ S  E  +  +N +I G CK G  E   +LF  LS K +  
Sbjct: 475 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKP 534

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           DVVAYN +I    ++G  ++ + L   M+E+G   +   +NTL+ + L+
Sbjct: 535 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR 583



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 167/380 (43%), Gaps = 37/380 (9%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           +++ G  ++    P N  T++ LI  FC    +  A  ++ KM   G  PN+ T  +L+ 
Sbjct: 100 VISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLN 159

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G   +  ++  + L  +M      F   Y+PN   + +LI GL       +   L   M 
Sbjct: 160 GYCHSKRISEAVALVDQM------FVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMV 213

Query: 128 DKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
            KG   + +        LCK+     A  LL  M Q  L P +  YT +++G C    ++
Sbjct: 214 AKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMD 273

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------L 225
            A+ LF  M  KG  P+V +YS LI+  C      +A  +  +MI              +
Sbjct: 274 DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 333

Query: 226 NGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           + F         +K+++EM   ++ P   T +  I+G C +  + E  ++F  +   +C 
Sbjct: 334 DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF 393

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             V  +++LI+G CK    +   ELF ++S + LV + V Y  LI  L + G       +
Sbjct: 394 PDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEI 453

Query: 337 LLSMEENGCALDVDTFNTLM 356
              M  +G   ++ T+NTL+
Sbjct: 454 FKEMVSDGVPPNIMTYNTLL 473



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 155/360 (43%), Gaps = 29/360 (8%)

Query: 10  AFGSFIRRCYRPLNDVTFNS-LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           +F  F RR +       +   L +    E  + DA  L  +M      P++     L++ 
Sbjct: 31  SFSFFWRRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSA 90

Query: 69  LRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           + +    ++ + L ++M N GM         N + Y  LI+  C+   +     +  +M 
Sbjct: 91  IAKMNKFDVVISLGEQMQNLGM-------PHNHYTYSILINCFCRRSQLPLALAVLGKMM 143

Query: 128 DKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
             G   N +         C   ++ EA  L++ M   G  P   T+  L++G  L  K +
Sbjct: 144 KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKAS 203

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
            A+AL D M  KG  PD+ +Y V++NG CK  + + A              + N+M+   
Sbjct: 204 EAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF------------ILLNKMEQGK 251

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           + P        IDGLCKN H+ + + LF  +E       V  ++SLI   C +G +  AS
Sbjct: 252 LEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDAS 311

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            L + +  + +  DV  ++ LI A  KEG++ +   L   M +      + T+++L+  F
Sbjct: 312 RLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGF 371


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 199/386 (51%), Gaps = 38/386 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL      ++  ++P +  TF +L++G C+ G I +A  +  KM   G +PNV T  TL+
Sbjct: 110 ALSVLAKILKLGHQP-DTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLM 168

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL +   +   L L  EM+       GI  P++F Y SLI  LC          L  EM
Sbjct: 169 NGLCKDRQLTEALNLFSEMIAK-----GI-SPDIFTYNSLIHALCNLCEWKHVTTLLNEM 222

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
               I  N +        LCK+ K+ EA+ ++++M+Q G+ P + TY  L++G+CL  ++
Sbjct: 223 VKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEM 282

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
           + A+ +FD M R G + +V SY+ LINGYCK   +++AM +  EM              +
Sbjct: 283 DEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTL 342

Query: 225 LNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           ++G   +         FNEM  C  +P   T +I +D LCKN  + E M L   +E SN 
Sbjct: 343 IHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNL 402

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           +  V+++N  I G C+ G  E A +LF+ L+ + L  DV  +NI+I  L K G + + + 
Sbjct: 403 DPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASK 462

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQ 361
           L   M+ENGC  +  T+NT+    LQ
Sbjct: 463 LFREMDENGCLRNGCTYNTITQGLLQ 488



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 31/290 (10%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P +F +  L+  + K +       L  +M   GI  +           C   ++  A  +
Sbjct: 54  PPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSV 113

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +++ G  P   T+T L+ G C+VGK+  A+ +FD M  +GF P+V +Y  L+NG CK
Sbjct: 114 LAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCK 173

Query: 210 NFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFT 246
           +  + EA+N+  EMI  G                          + NEM    ++P   +
Sbjct: 174 DRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVS 233

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            NI +D LCK G V E  ++   +     E  V  + +L+ G C     + A ++F+ + 
Sbjct: 234 LNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMV 293

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               V +VV+YN LI+   K  +I K  YL   M       +  T++TL+
Sbjct: 294 RNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLI 343


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 132/427 (30%), Positives = 214/427 (50%), Gaps = 73/427 (17%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + ++  A+      +   Y+P +  TF +LI G  +     +A  LV +M   GC+P++ 
Sbjct: 166 SKRISDAVALVDQMVEMGYKP-DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV 224

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T  T++ GL + G+++L L L ++M  G        + +V  Y ++IDGLCK + +D   
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKMEKGK------IEADVVIYNTIIDGLCKYKHMDDAL 278

Query: 121 DLFMEMKDKGI---------------------NANTLLC--------------------- 138
           +LF EM +KGI                     +A+ LL                      
Sbjct: 279 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 338

Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K+ KLVEA +L + M++R ++P IFTY+ L+NG+C+  +++ A  +F+ M  K   P+V
Sbjct: 339 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 398

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNE 234
            +YS LI G+CK   VEE M + REM              +++GF         + +F +
Sbjct: 399 VTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 458

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    V P   T NI +DGLCKNG + + M +F  L+ S  E  +  +N +I G CK G 
Sbjct: 459 MVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 518

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E   ELF  LS K +  +V+AYN +I    ++G  ++ + LL  M+E+G   +  T+NT
Sbjct: 519 VEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNT 578

Query: 355 LMISFLQ 361
           L+ + L+
Sbjct: 579 LIRARLR 585



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 170/391 (43%), Gaps = 40/391 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           KV  A+  FG  ++   RP    V FN L+              L ++M T G   ++ T
Sbjct: 63  KVDDAVDLFGDMVKS--RPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYT 120

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
               I    R   ++L L +  +M+  +G     Y+P++    SL++G C  + +     
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMK-LG-----YEPDIVTLSSLLNGYCHSKRISDAVA 174

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  +M + G   +T         L    K  EA  L++ M+QRG  P + TY  ++NG C
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLC 234

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---- 229
             G +++A++L   M +     DV  Y+ +I+G CK  ++++A+N+  EM   G +    
Sbjct: 235 KRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVF 294

Query: 230 -------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                              ++ ++M    + P   T +  ID   K G ++E  +L+  +
Sbjct: 295 TYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 354

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
              + +  +  ++SLI G C     + A  +F  +  K+   +VV Y+ LI    K  ++
Sbjct: 355 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRV 414

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           ++   L   M + G   +  T+ TL+  F Q
Sbjct: 415 EEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 445



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 136/283 (48%), Gaps = 24/283 (8%)

Query: 92  FGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCK 139
           FG + K    P++  +  L+  + K    +    L  +M+  GI+ +           C+
Sbjct: 71  FGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCR 130

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           +++L  A  +L  MM+ G  P I T + LLNGYC   +++ A+AL D M   G+ PD F+
Sbjct: 131 RSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFT 190

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           ++ LI+G   +    EA+ +  +M+  G +            P+  T    ++GLCK G 
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQ------------PDLVTYGTVVNGLCKRGD 238

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +   + L   +E    E  V I+N++I G CK+   + A  LF ++  K +  DV  Y+ 
Sbjct: 239 IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSS 298

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           LI  L   G+    + LL  M E     +V TF+ L+ +F+++
Sbjct: 299 LISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 341



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 14/191 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI GF    +  +A  + K+M + G  PN+ T + L+ GL + G +   + + 
Sbjct: 432 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF 491

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + +           +P+++ Y  +I+G+CK   V+   +LF  +  KG++ N +      
Sbjct: 492 EYLQRS------TMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMI 545

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+K    EA+ LL+ M + G  P   TY  L+      G    +  L   M   GF 
Sbjct: 546 SGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFA 605

Query: 195 PDVFSYSVLIN 205
            D  +  ++ N
Sbjct: 606 GDASTIGLVTN 616



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 7/133 (5%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A++ F    R    P +  T+N +I+G C  G + D  +L   ++  G  PNV   
Sbjct: 483 KLAKAMVVFEYLQRSTMEP-DIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAY 541

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +T+I+G  R G+          ++  M + G +  PN   Y +LI    +D   + + +L
Sbjct: 542 NTMISGFCRKGSKEEA----DSLLKKMKEDGPL--PNSGTYNTLIRARLRDGDREASAEL 595

Query: 123 FMEMKDKGINANT 135
             EM+  G   + 
Sbjct: 596 IKEMRSCGFAGDA 608


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 131/409 (32%), Positives = 198/409 (48%), Gaps = 73/409 (17%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N VTFN+LI G  +     +A  L+ +M   GC+P++ T   ++ GL + G+ +L 
Sbjct: 182 YQP-NTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
             L  +M  G        +P V  Y ++IDGLCK + +D   +LF EM+ KGI  N +  
Sbjct: 241 FNLLNKMEQGK------LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 137 ------LC-----------------------------------KKTKLVEANRLLELMMQ 155
                 LC                                   K+ KLVEA +L + M++
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R ++P I TY+ L+NG+C+  +++ A  +F+ M  K   PDV +Y+ LI G+CK   VEE
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEE 414

Query: 216 AMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFID 252
            M V REM   G                        ++IF EM    V P   T N  +D
Sbjct: 415 GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLD 474

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCKNG + + M +F  L+ S  E  +  +N +I G CK G  E   +LF  LS K +  
Sbjct: 475 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKP 534

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           DVVAYN +I    ++G  ++ + L   M+E+G   +   +NTL+ + L+
Sbjct: 535 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR 583



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 20/273 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  +  L+  + K    D    L  +M++ GI  N           C++++L  A  +
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  MM+ G  P I T + LLNGYC   +++ A+AL D M   G+ P+  +++ LI+G   
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           +    EAM +   M+  G +            P+  T  + ++GLCK G       L   
Sbjct: 199 HNKASEAMALIDRMVAKGCQ------------PDLVTYGVVVNGLCKRGDTDLAFNLLNK 246

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +E    E  V I+N++I G CK+   + A  LF ++  K +  +VV Y+ LI  L   G+
Sbjct: 247 MEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 306

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
               + LL  M E     DV TF+ L+ +F+++
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKE 339


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 131/409 (32%), Positives = 198/409 (48%), Gaps = 73/409 (17%)

Query: 19   YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
            Y+P N VTFN+LI G  +     +A  L+ +M   GC+P++ T   ++ GL + G+ +L 
Sbjct: 796  YQP-NTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 854

Query: 79   LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
              L  +M  G        +P V  Y ++IDGLCK + +D   +LF EM+ KGI  N +  
Sbjct: 855  FNLLNKMEQGK------LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 908

Query: 137  ------LC-----------------------------------KKTKLVEANRLLELMMQ 155
                  LC                                   K+ KLVEA +L + M++
Sbjct: 909  SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 968

Query: 156  RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
            R ++P I TY+ L+NG+C+  +++ A  +F+ M  K   PDV +Y+ LI G+CK   VEE
Sbjct: 969  RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEE 1028

Query: 216  AMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFID 252
             M V REM   G                        ++IF EM    V P   T N  +D
Sbjct: 1029 GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLD 1088

Query: 253  GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            GLCKNG + + M +F  L+ S  E  +  +N +I G CK G  E   +LF  LS K +  
Sbjct: 1089 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKP 1148

Query: 313  DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            DVVAYN +I    ++G  ++ + L   M+E+G   +   +NTL+ + L+
Sbjct: 1149 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR 1197



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 38/369 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL   G  ++  Y P + VT  SL+ GFC    + DA  LV KM   G +P++   + +I
Sbjct: 242 ALSILGKMLKLGYEP-DRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAII 300

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             L +T  +N      +E+     +  GI +PNV  Y +L++GLC          L  +M
Sbjct: 301 DSLCKTKRVNDAFDFFKEI-----ERKGI-RPNVVTYTALVNGLCNSSRWSDAARLLSDM 354

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             K I  N +          K  K++EA  L E M++  ++P I TY+ L+NG CL  ++
Sbjct: 355 IKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI 414

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
           + A  +FD M  KG + DV SY+ LING+CK   VE+ M + REM              +
Sbjct: 415 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 474

Query: 225 LNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           + GF         ++ F++M    + P+ +T NI + GLC NG + + + +F  ++    
Sbjct: 475 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 534

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           +L +  + ++IRG CK G  E A  LF  LS K L  D+V Y  ++  L  +G + +   
Sbjct: 535 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 594

Query: 336 LLLSMEENG 344
           L   M++ G
Sbjct: 595 LYTKMKQEG 603



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 156/335 (46%), Gaps = 46/335 (13%)

Query: 23  NDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ND+ TFN +I  FC    +  A  ++ KM   G  P+  T  +L+ G  R   ++  + L
Sbjct: 221 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 280

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
             +MV    + G  YKP++  Y ++ID LCK + V+   D F E++ KGI          
Sbjct: 281 VDKMV----EIG--YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIR--------- 325

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                             P + TYT L+NG C   + + A  L   M +K   P+V +YS
Sbjct: 326 ------------------PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 367

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            L++ + KN  V EA            K++F EM   ++ P+  T +  I+GLC +  + 
Sbjct: 368 ALLDAFVKNGKVLEA------------KELFEEMVRMSIDPDIVTYSSLINGLCLHDRID 415

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           E  ++F  +    C   V  +N+LI G CK    E   +LF ++S + LV++ V YN LI
Sbjct: 416 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 475

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               + G + K       M+  G + D+ T+N L+
Sbjct: 476 QGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILL 510



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 165/362 (45%), Gaps = 41/362 (11%)

Query: 30  LIKGFCM--EGNIRDASQLVKKMATFGCRPNV------TTCDTLITGLRRTGNMNLTLKL 81
           L+K  C   +G+I  +++L+KKM + G  P++        C   ++ LR           
Sbjct: 604 LMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYR 663

Query: 82  HQEMVNGMGD---------FGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
            +   NG+ +         FG + K    P++  +  L+  + K    D    L  +M++
Sbjct: 664 EKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN 723

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
            GI  N           C++++L  A  +L  MM+ G  P I T + LLNGYC   +++ 
Sbjct: 724 LGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISE 783

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A+AL D M   G+ P+  +++ LI+G   +    EAM +   M+  G +           
Sbjct: 784 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQ----------- 832

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T  + ++GLCK G       L   +E    E  V I+N++I G CK+   + A  
Sbjct: 833 -PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALN 891

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF ++  K +  +VV Y+ LI  L   G+    + LL  M E     DV TF+ L+ +F+
Sbjct: 892 LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV 951

Query: 361 QK 362
           ++
Sbjct: 952 KE 953



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 15/236 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KVL A   F   +R    P + VT++SLI G C+   I +A+Q+   M + GC  +V + 
Sbjct: 378 KVLEAKELFEEMVRMSIDP-DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSY 436

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI G  +   +   +KL +EM        G+   N   Y +LI G  +   VD+ ++ 
Sbjct: 437 NTLINGFCKAKRVEDGMKLFREMSQR-----GLVS-NTVTYNTLIQGFFQAGDVDKAQEF 490

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F +M   GI+ +          LC   +L +A  + E M +R ++  I TYT ++ G C 
Sbjct: 491 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 550

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
            GKV  A +LF S++ KG  PD+ +Y+ +++G C    + E   +  +M   G  K
Sbjct: 551 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMK 606



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/447 (22%), Positives = 173/447 (38%), Gaps = 114/447 (25%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI+GF   G++  A +   +M  FG  P++ T + L+ GL   G +   L + 
Sbjct: 467 NTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIF 526

Query: 83  QEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLCKD 113
           ++M               + GM   G +               KP++  Y +++ GLC  
Sbjct: 527 EDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK 586

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVI----------- 162
            L+ + + L+ +MK +G+  N        +  +  L++ M+  G  P +           
Sbjct: 587 GLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKK 646

Query: 163 -------------FTYTPLL--NGYCLVGKVNVAIALFDSMARKGFMPDV---------- 197
                        + Y   L  NG   + K++ A+ALF  M +    P +          
Sbjct: 647 ALSLLRAFSGKTSYDYREKLSRNGLSEL-KLDDAVALFGEMVKSRPFPSIIEFSKLLSAI 705

Query: 198 -------------------------FSYSVLINGYCKNFNVEEAMNVSREM--------- 223
                                    ++YS+LIN +C+   +  A+ V  +M         
Sbjct: 706 AKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNI 765

Query: 224 -----ILNGF---KKI------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                +LNG+   K+I       ++M +    P T T N  I GL  +    E M L   
Sbjct: 766 VTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDR 825

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +    C+  +  +  ++ G CK G  ++A  L NK+    L   V+ YN +I  L K   
Sbjct: 826 MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKH 885

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           +     L   ME  G   +V T+++L+
Sbjct: 886 MDDALNLFKEMETKGIRPNVVTYSSLI 912


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/391 (31%), Positives = 204/391 (52%), Gaps = 38/391 (9%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +K++ A+  F   ++  Y P + +T++++I G C  G+   A QL+KKM   GC+PNV  
Sbjct: 61  AKIIDAVKLFDEMVKMGYEP-DVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVV 119

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             T+I  L +   +   ++   EMVN      GI  PNV  Y S++ G C     ++   
Sbjct: 120 YSTIIDSLCKDKLITEAMEFLSEMVNR-----GI-SPNVVTYSSILHGFCNLGRSNEATS 173

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF +M ++ +  +T+        L K+  ++EA  + E M+++G+ P + TY  L++GYC
Sbjct: 174 LFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYC 233

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---------- 223
              +++ A  LF+ M RKG  P V SY++LI G+CK+  ++EA  +  EM          
Sbjct: 234 SQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTV 293

Query: 224 ----ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
               ++ GF         +K+  EM+   ++P+  T +I +DGLCK GH+ E  EL   +
Sbjct: 294 TYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAM 353

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           + S  E  + I+  LI+G C FG  E A ELF+ L  K +  DVV Y ++I  L K G  
Sbjct: 354 QESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLS 413

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            +   L   M  +GC  +  T+N ++  FL+
Sbjct: 414 NEACELFRDMAVHGCLPNSCTYNVIIQGFLR 444



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 122/248 (49%), Gaps = 23/248 (9%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L  K K+++A +L + M++ G  P + TY+ ++NG C +G   +AI L   M  KG  P+
Sbjct: 57  LSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPN 116

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFN 233
           V  YS +I+  CK+  + EAM    EM              IL+GF           +F 
Sbjct: 117 VVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFK 176

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +M   NV+P+T T NI +DGL K G +LE   +F T+     E  V  +N+L+ G C   
Sbjct: 177 QMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQS 236

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A +LFN +  K     V +YNILI    K G+I +   LL  M       D  T++
Sbjct: 237 QMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYS 296

Query: 354 TLMISFLQ 361
           TLM  F Q
Sbjct: 297 TLMKGFCQ 304



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 117/268 (43%), Gaps = 50/268 (18%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           +L A   F + I +   P N  T+N+L+ G+C +  + +A +L   M   GC P+V + +
Sbjct: 203 ILEAQCVFETMIEKGVEP-NVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYN 261

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            LI G  ++G ++    L  EM +          P+   Y +L+ G C+D      + L 
Sbjct: 262 ILIKGHCKSGRIDEAKGLLAEMSHKA------LTPDTVTYSTLMKGFCQDGRPQDAQKLL 315

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EM+  G+  + +        LCK+  L EA  LL+ M +  + P IF YT L+ G C  
Sbjct: 316 EEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNF 375

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLIN------------------------------ 205
           GK+  A  LF ++  KG  PDV +Y+V+I+                              
Sbjct: 376 GKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTY 435

Query: 206 -----GYCKNFNVEEAMNVSREMILNGF 228
                G+ +N +   A  +  EM+  GF
Sbjct: 436 NVIIQGFLRNGDTSNAGRLIEEMVGRGF 463



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 10/165 (6%)

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV++ ++LIN +C +         + +     F  + N  KL  + P   T +  ++GL
Sbjct: 8   PDVYTLTILINCFCHS---------NHDHFHFAFSVLGNMFKL-GLQPNHVTFSTLLNGL 57

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
                +++ ++LF  +     E  V  ++++I G CK G   +A +L  K+  K    +V
Sbjct: 58  SSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNV 117

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V Y+ +I +L K+  I +    L  M   G + +V T+++++  F
Sbjct: 118 VVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGF 162


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 192/387 (49%), Gaps = 64/387 (16%)

Query: 21  PLNDVTFNSLIKGFCM--EGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           P N  T + LI  FC    G I +A  L  KM   G RP+V T  TLI GL + GN +  
Sbjct: 93  PPNIYTLHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAA 152

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           ++L   MV          +PNVF Y ++ID LCKDR V +  +LF EM  KGI+ +    
Sbjct: 153 IRLLGSMVQKNC------QPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTY 206

Query: 137 -----------------------------------------LCKKTKLVEANRLLELMMQ 155
                                                    LCK+ K+ EA+ +++ M+Q
Sbjct: 207 NSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQ 266

Query: 156 R-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           R G  P + +Y  L+NGYC + +++ A+ LF  M R+  +PD  +YS LI+G C    ++
Sbjct: 267 RGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQ 326

Query: 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +A+             +F+EM  C+ +P   T  I +D LCKN ++ E M L   +E SN
Sbjct: 327 DAI------------ALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSN 374

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            +  +++ N  I G C+ G  E A +LF+ LS K L  DV  Y+I+I+ L + G + + +
Sbjct: 375 LDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEAS 434

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQ 361
            L   M+ENGC L+   +NT+   FL+
Sbjct: 435 KLFREMDENGCTLNGCIYNTITRGFLR 461



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 18/241 (7%)

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQR---GLNPVIFTYTPLLNGYCLV--G 176
           L M+     ++ N LL    K+   + LL L  Q    G+ P I+T   L+N +C +  G
Sbjct: 53  LRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRG 112

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           K+  A+ LFD M  +GF PDV +Y  LING CK  N   A+            ++   M 
Sbjct: 113 KIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAI------------RLLGSMV 160

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
             N  P  F  N  ID LCK+  V E   LF  +        +  +NSLI   C    ++
Sbjct: 161 QKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWK 220

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM-EENGCALDVDTFNTL 355
             + L N++    ++ DVV++N ++ AL KEG++ + + ++  M +  GC  +V ++NTL
Sbjct: 221 HVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTL 280

Query: 356 M 356
           +
Sbjct: 281 I 281



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 38/251 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           V+FN+++   C EG + +A  +V KM   G C PNV + +TLI G  +   ++  + L  
Sbjct: 239 VSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFG 298

Query: 84  EM---------------------VNGMGDFGGIYK--------PNVFCYGSLIDGLCKDR 114
           EM                     V  + D   ++         PN+  Y  L+D LCK+R
Sbjct: 299 EMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNR 358

Query: 115 LVDQTKDLFMEMK----DKGINANTL----LCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
            + +   L   ++    D  I  N +    +C+  +L  A  L   +  +GL P ++TY+
Sbjct: 359 YLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYS 418

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            ++NG C  G ++ A  LF  M   G   +   Y+ +  G+ +N     A+ + +EM+  
Sbjct: 419 IMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVAR 478

Query: 227 GFKKIFNEMKL 237
           GF    + M L
Sbjct: 479 GFSADASTMTL 489


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 140/439 (31%), Positives = 215/439 (48%), Gaps = 96/439 (21%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N VT ++L+KG C EG + DA +L  KM   G + ++     LI  LR+T      
Sbjct: 5   YQP-NLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRA 63

Query: 79  LKLHQEMVNGM--GDF-------------GGIYK--------------PNVFCYGSLIDG 109
           ++LH+ M++ +  G+F             G   K              PNV  Y SLI+G
Sbjct: 64  VELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLING 123

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTL--------------------------------- 136
           LC+   + +  +LF EM  +GI AN +                                 
Sbjct: 124 LCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPD 183

Query: 137 ----------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                     L KK K+ EA ++ ELM+++G  P I TY  LLNG CL  +++ A+ LF+
Sbjct: 184 VVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFE 243

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM-------------IL------NG 227
            M  +G   DV SY+ LINGYC +   EEAM + R+M             IL      NG
Sbjct: 244 VMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNG 303

Query: 228 ----FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                K++FN M++C   P   T  + +DGLCKNG + E +++F +L+    +  + I++
Sbjct: 304 RIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYS 363

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            LI G  +   +E A E+F+++    LV ++V YNI+I+ L KEG++ +   L + MEE+
Sbjct: 364 ILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEES 423

Query: 344 GCALDVDTFNTLMISFLQK 362
           GC  D  +FN ++  FLQ+
Sbjct: 424 GCEQDEISFNFIIRGFLQE 442



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 159/338 (47%), Gaps = 37/338 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+NSLI   C  G  ++A++   +M   G  P+V T  TLI  L + G +    K+ 
Sbjct: 148 NVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIF 207

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLL 137
           + M+   G+      PN+  Y SL++GLC    +D    LF  M ++GI     + NTL+
Sbjct: 208 ELMIK-QGE-----APNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLI 261

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C   K  EA  L   M    L P I TYT LL      G++  A  LF++M   G  
Sbjct: 262 NGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQS 321

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           P + +Y+VL++G CKN  +EEA++V R +    +K                       +I
Sbjct: 322 PSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEI 381

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F+E+    +VP   T NI I+GLCK G +LE   LF  +E S CE     FN +IRG  +
Sbjct: 382 FDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQ 441

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
               + A E   ++  KN   +     +L++    + Q
Sbjct: 442 ENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYAADAQ 479



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 25/227 (11%)

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           M+ G  P + T + L+ G C  GKV  A+ LFD M R GF  D+  Y  LIN   K    
Sbjct: 1   MKSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQA 60

Query: 214 EEAMNVSREMI------------------------LNGFKKIFNEMKLCNVVPETFTCNI 249
             A+ + R M+                        + G  K+F EM    + P     + 
Sbjct: 61  RRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGL-KMFREMINMGICPNVIVYSS 119

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            I+GLC+ G + E + LF  +     +  V  +NSLI   C+FG+++ A+  F+++  + 
Sbjct: 120 LINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEG 179

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++ DVV +  LI  L K+G++++   +   M + G A ++ T+N+L+
Sbjct: 180 ILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLL 226



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 37/231 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG----------N 74
           +++N+LI G+C  G   +A  L +KM      P++TT   L+  L + G          N
Sbjct: 255 ISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNN 314

Query: 75  MNL-----TLKLHQEMVNGMGDFGGI--------------YKPNVFCYGSLIDGLCKDRL 115
           M +     +L  +  +++G+   G I              YKP++  Y  LI G+ + R 
Sbjct: 315 MQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARR 374

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
            +   ++F E+   G+  N +        LCK+ KL+EA RL   M + G      ++  
Sbjct: 375 WESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNF 434

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           ++ G+    +V  A+     M  K F P+     +L+N Y  +    E  N
Sbjct: 435 IIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYAADAQSSELPN 485


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/428 (29%), Positives = 205/428 (47%), Gaps = 73/428 (17%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S V  A+   G   +   +P + +TFN+LI G C EG I++A  L  +M   G  PNV +
Sbjct: 145 SHVDFAVSVMGKMFKLGIQP-DAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVIS 203

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +T+I GL + GN  + +++ ++M    G      KPNV  Y ++ID LCKDRLV++  +
Sbjct: 204 YNTVINGLCKNGNTIMAVRVFRKMEQNRG------KPNVVTYNTIIDSLCKDRLVNEAVE 257

Query: 122 LFMEMKDKGINANTL-------------------------------------------LC 138
              EM D+GI  + +                                           LC
Sbjct: 258 FLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLC 317

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K+  + EA  + E M ++G  P  +TY  L++GYCL  +++ AI +   M  KG  P++ 
Sbjct: 318 KEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLS 377

Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKI---------FNEM 235
           SY++LINGYCK+  + EA  +  EM              ++ G  ++         F EM
Sbjct: 378 SYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEM 437

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               ++P+    +I +DG CK+GH+ E ++L   +     +  + ++  LIRG    G  
Sbjct: 438 CSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKL 497

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           E+A ELF+KLS   +  D+  YN++I  L KEG   +       ME++G   D  ++N +
Sbjct: 498 EVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVI 557

Query: 356 MISFLQKE 363
           +  FLQ +
Sbjct: 558 IQGFLQNQ 565



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 126/271 (46%), Gaps = 20/271 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           +P+V  +G  +  + K +       L  +M   G+  N          LC+ + +  A  
Sbjct: 93  RPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVS 152

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           ++  M + G+ P   T+  L+NG C  GK+  A+ LF+ M   G  P+V SY+ +ING C
Sbjct: 153 VMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLC 212

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           KN N   A+ V R+M  N  K            P   T N  ID LCK+  V E +E   
Sbjct: 213 KNGNTIMAVRVFRKMEQNRGK------------PNVVTYNTIIDSLCKDRLVNEAVEFLS 260

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +        V  +N+++ G C  G    A+ LF ++  +N++ D V +NIL+  L KEG
Sbjct: 261 EMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEG 320

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + +   +  +M E G   +  T+N LM  +
Sbjct: 321 MVSEARCVSETMTEKGAEPNAYTYNALMDGY 351



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 21/230 (9%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KVLG ++  G     C   L+  ++N LI G+C    + +A +L+ +M+     P+  T 
Sbjct: 362 KVLGIMIGKG-----CAPNLS--SYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTY 414

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            TL+ GL + G     L L +EM +      G+  P++  Y  L+DG CK   +D+   L
Sbjct: 415 STLMQGLCQVGRPREALNLFKEMCSS-----GLL-PDLMAYSILLDGFCKHGHLDEALKL 468

Query: 123 FMEMKDKGINANTLLCK--------KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM ++ I  N +L            KL  A  L   +   G+ P I+TY  ++ G   
Sbjct: 469 LKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLK 528

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
            G  + A   F  M   GF+PD  SY+V+I G+ +N +   A+ +  EM+
Sbjct: 529 EGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMV 578



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 12/207 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M++    P +  +   L       + + A++L + M   G   +V+S +VLIN  C+  +
Sbjct: 87  MVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSH 146

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           V+ A++V  +M   G +            P+  T N  I+GLC  G + E + LF  +  
Sbjct: 147 VDFAVSVMGKMFKLGIQ------------PDAITFNTLINGLCNEGKIKEAVGLFNEMVW 194

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           S  E  V  +N++I G CK G   +A  +F K+       +VV YN +I +L K+  + +
Sbjct: 195 SGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNE 254

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
               L  M + G   DV T+NT++  F
Sbjct: 255 AVEFLSEMVDRGIPPDVVTYNTILHGF 281


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 210/427 (49%), Gaps = 73/427 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            V+ A+   G   +   +P + +TFN+LI G C+EG I++A  L  +M   G +P+V + 
Sbjct: 142 HVVFAISVLGKMFKLGIQP-DAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISY 200

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            T+I GL ++GN ++ L+L ++M     +  G  KPN+  Y ++ID LCKD LV+   DL
Sbjct: 201 STVINGLCKSGNTSMALQLLRKM-----EEKGC-KPNLVAYTTIIDSLCKDTLVNDAMDL 254

Query: 123 FMEMKDKGINANTL-------------------------------------------LCK 139
             EM D+GI  + +                                           LCK
Sbjct: 255 LSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCK 314

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           +  + EA  + E M ++G  P  +TY  L++GYCL  +++ A  + D M  KG  P V S
Sbjct: 315 EGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHS 374

Query: 200 YSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKI---------FNEMK 236
           Y++LINGYCK   ++EA ++  EM              ++ G  ++         F EM 
Sbjct: 375 YNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMC 434

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              ++P+  T +  +DGLCK+GH+ E ++L  +++ S  E  + ++N LI G    G  E
Sbjct: 435 SSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLE 494

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +A ELF+KL    +   +  Y I+I  L KEG   +   L   ME++G   +  ++N ++
Sbjct: 495 VAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVII 554

Query: 357 ISFLQKE 363
             FLQ +
Sbjct: 555 QGFLQNQ 561



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 127/268 (47%), Gaps = 20/268 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           +P+V  +G  +  + K +       L  +M   G+  N          LC+   +V A  
Sbjct: 89  RPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAIS 148

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L  M + G+ P   T+  L+NG C+ G++  A+ LF+ M R+G  PDV SYS +ING C
Sbjct: 149 VLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLC 208

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K+ N   A+ + R+M   G K            P        ID LCK+  V + M+L  
Sbjct: 209 KSGNTSMALQLLRKMEEKGCK------------PNLVAYTTIIDSLCKDTLVNDAMDLLS 256

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +        V  +++++ G C  G    A+ LFN++  +N++ + V + IL+  L KEG
Sbjct: 257 EMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEG 316

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
            + +   +  +M + G   +  T+N LM
Sbjct: 317 MVSEARCVFEAMTKKGAEPNAYTYNALM 344



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 14/207 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N LI G+C    + +A  L+ +M+     P+  T  TL+ GL + G     L L +EM
Sbjct: 374 SYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEM 433

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK------ 139
            +      G+  P++  Y +L+DGLCK   +D+   L   M++  I  + +L        
Sbjct: 434 CSS-----GLL-PDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGM 487

Query: 140 --KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
               KL  A  L   +   G+ P I TYT ++ G    G  + A  LF  M   GF+P+ 
Sbjct: 488 FIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNS 547

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMI 224
            SY+V+I G+ +N +   A+ +  EM+
Sbjct: 548 CSYNVIIQGFLQNQDSSTAIRLIDEMV 574



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 12/207 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M++    P +  +   L       + +  ++L + M   G   +V+S ++LIN  C+  +
Sbjct: 83  MLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNH 142

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           V  A++V  +M   G +            P+  T N  I+G C  G + E + LF  +  
Sbjct: 143 VVFAISVLGKMFKLGIQ------------PDAITFNTLINGRCIEGEIKEAVGLFNEMVR 190

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              +  V  ++++I G CK G   +A +L  K+  K    ++VAY  +I +L K+  +  
Sbjct: 191 RGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVND 250

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
              LL  M + G   DV T++T++  F
Sbjct: 251 AMDLLSEMVDRGIPPDVVTYSTILHGF 277


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/426 (30%), Positives = 207/426 (48%), Gaps = 75/426 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++  A+      +   Y+P + VTF +L+ G        +A  LV++M   GC+P++ T 
Sbjct: 150 RISEAVALVDQMVEMGYQP-DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 208

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             +I GL + G  +L L L  +M  G        + +V  Y ++ID LCK R VD   +L
Sbjct: 209 GAVINGLCKRGEPDLALNLLNKMEKGK------IEADVVIYSTVIDSLCKYRHVDDALNL 262

Query: 123 FMEMKDKGI---------------------NANTLL----------------------CK 139
           F EM +KGI                     +A+ LL                       K
Sbjct: 263 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAK 322

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           + KL+EA +L + M+QR ++P I TY  L+NG+C+  +++ A  +F  M  K  +PDV +
Sbjct: 323 EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVT 382

Query: 200 YSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMK 236
           Y+ LING+CK   V + M + R+M              +++GF         + +F +M 
Sbjct: 383 YNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMV 442

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              V P   T N  +DGLCKNG + + M +F  L+ S  E  +  +N +  G CK G  E
Sbjct: 443 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVE 502

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY-LLLSMEENGCALDVDTFNTL 355
              +LF  LS K +  DV+AYN +I    K+G +K+E Y L + M+E+G   D  T+NTL
Sbjct: 503 DGWDLFCSLSLKGVKPDVIAYNTMISGFCKKG-LKEEAYTLFIKMKEDGPLPDSGTYNTL 561

Query: 356 MISFLQ 361
           + + L+
Sbjct: 562 IRAHLR 567



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 24/294 (8%)

Query: 81  LHQEMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           LH ++   +  FG + K    P++  +  L+  + K +  D       +M+  G++ N  
Sbjct: 42  LHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLY 101

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LC++++L  A  +L  MM+ G  P I T   LLNG+C   +++ A+AL D M
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
              G+ PD  +++ L++G  ++    EA+ +   M++ G +            P+  T  
Sbjct: 162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQ------------PDLVTYG 209

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             I+GLCK G     + L   +E    E  V I++++I   CK+   + A  LF ++  K
Sbjct: 210 AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK 269

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +  DV  Y+ LI  L   G+    + LL  M E     +V TFN+L+ +F ++
Sbjct: 270 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKE 323



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 14/191 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI GF    +  +A  + K+M + G  PN+ T +TL+ GL + G +   + + 
Sbjct: 414 NTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 473

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + +           +P+++ Y  + +G+CK   V+   DLF  +  KG+  + +      
Sbjct: 474 EYLQKSK------MEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMI 527

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CKK    EA  L   M + G  P   TY  L+  +   G    +  L   M    F 
Sbjct: 528 SGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFA 587

Query: 195 PDVFSYSVLIN 205
            D  +Y ++ +
Sbjct: 588 GDASTYGLVTD 598


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/409 (30%), Positives = 201/409 (49%), Gaps = 73/409 (17%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P + VTFN+LI G  +     +A  L+ +M   GC+P++ T  T++ GL + G+++L 
Sbjct: 182 YKP-DTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 240

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI------- 131
           L L ++M  G        + NV  Y ++IDGLCK + +D   DLF +M+ KGI       
Sbjct: 241 LSLLKKMEKGK------IEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 294

Query: 132 --------------NANTLL----------------------CKKTKLVEANRLLELMMQ 155
                         +A+ LL                       K+ KL+EA +L + M+Q
Sbjct: 295 NSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQ 354

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R ++P I TY  L+NG+C+  +++ A  +F  M  K  +PDV +Y+ LI G+CK   VEE
Sbjct: 355 RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEE 414

Query: 216 AMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFID 252
            M + REM   G                        +KIF +M    V P+  T +I +D
Sbjct: 415 GMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLD 474

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK G + + + +F  L+ S  E  +  +N +I G CK G  E   +LF  LS K +  
Sbjct: 475 GLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 534

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +V+ Y  +I    ++G  ++ + L   M+E+G   D   +NTL+ + L+
Sbjct: 535 NVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLR 583



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 133/273 (48%), Gaps = 20/273 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  +  L+  + K    D    L  +M++ GI  N           C++++L  A  +
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAV 138

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  MM+ G  P I T + LLNGYC   +++ A+AL D M   G+ PD  +++ LI+G   
Sbjct: 139 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFL 198

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           +    EA+ +   M+  G +            P+ FT    ++GLCK G +   + L   
Sbjct: 199 HNKASEAVALIDRMVARGCQ------------PDLFTYGTVVNGLCKRGDIDLALSLLKK 246

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +E    E  V I+N++I G CK+   + A +LFNK+  K +  DV  YN LI  L   G+
Sbjct: 247 MEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGR 306

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
               + LL  M E     +V TFN+L+ +F ++
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFNSLIDAFAKE 339



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 159/364 (43%), Gaps = 56/364 (15%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N  T++ L+  FC    +  A  ++ KM   G  P++ T  +L+ G      ++  + 
Sbjct: 113 PHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVA 172

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           L  +MV  MG     YKP+   + +LI GL            F+                
Sbjct: 173 LVDQMVE-MG-----YKPDTVTFNTLIHGL------------FLH--------------- 199

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            K  EA  L++ M+ RG  P +FTY  ++NG C  G +++A++L   M +     +V  Y
Sbjct: 200 NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIY 259

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKL 237
           + +I+G CK  ++++A ++  +M   G K                       ++ ++M  
Sbjct: 260 NTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIE 319

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             + P   T N  ID   K G ++E  +LF  +   + +  +  +NSLI G C     + 
Sbjct: 320 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE 379

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A ++F  +  K+ + DVV YN LI    K  ++++   L   M + G   +  T+NTL+ 
Sbjct: 380 AQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 439

Query: 358 SFLQ 361
              Q
Sbjct: 440 GLFQ 443



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 165/355 (46%), Gaps = 27/355 (7%)

Query: 14  FIRRCYRPLNDVTFNS-LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           F RR +       +   L +    E  + DA  L  +M      P++     L++ + + 
Sbjct: 35  FWRRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM 94

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-- 130
              ++ + L ++M N      GI   N + Y  L++  C+   +     +  +M   G  
Sbjct: 95  NKFDVVISLGEQMQNL-----GI-PHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYE 148

Query: 131 ---INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
              +  ++LL   C   ++ EA  L++ M++ G  P   T+  L++G  L  K + A+AL
Sbjct: 149 PDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVAL 208

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
            D M  +G  PD+F+Y  ++NG CK  +++ A+++ ++M     +         NVV   
Sbjct: 209 IDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE--------ANVV--- 257

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
              N  IDGLCK  H+ +  +LF  +E    +  V  +NSLI   C +G +  AS L + 
Sbjct: 258 -IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSD 316

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +  + +  +VV +N LI A  KEG++ +   L   M +     ++ T+N+L+  F
Sbjct: 317 MIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGF 371



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 116/251 (46%), Gaps = 47/251 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LIKGFC    + +  +L ++M+  G   N  T +TLI GL + G+ ++  K+ ++
Sbjct: 397 VTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 456

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           MV+      G+  P++  Y  L+DGL                           CK  KL 
Sbjct: 457 MVS-----DGV-PPDIITYSILLDGL---------------------------CKYGKLE 483

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +A  + E + +  + P I+TY  ++ G C  GKV     LF S++ KG  P+V  Y+ +I
Sbjct: 484 KALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 543

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           +G+C+    EEA              +F EMK    +P++   N  I    ++G      
Sbjct: 544 SGFCRKGLKEEA------------DALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASA 591

Query: 265 ELFPTLEISNC 275
           EL    E+ +C
Sbjct: 592 ELIK--EMRSC 600



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 33/206 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI+G    G+   A ++ KKM + G  P++ T   L+ GL + G +   L + 
Sbjct: 430 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 489

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
           + +           +PN++ Y  +I+G+CK   V+   DLF  +  KG+  N ++     
Sbjct: 490 EYLQKSK------MEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVII----- 538

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                                 YT +++G+C  G    A ALF  M   G +PD   Y+ 
Sbjct: 539 ----------------------YTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNT 576

Query: 203 LINGYCKNFNVEEAMNVSREMILNGF 228
           LI    ++ +   +  + +EM   GF
Sbjct: 577 LIRARLRDGDKAASAELIKEMRSCGF 602


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/394 (32%), Positives = 192/394 (48%), Gaps = 42/394 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           K   A+  F   + R  RP  DV T+ ++I G C  G    A+ L+KKM   GC+PNV T
Sbjct: 183 KFAQAMELFDDMVARGCRP--DVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVT 240

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
             T+I   R+   +N  L +   M V G+        P++F Y SLI GLC      +  
Sbjct: 241 YSTIIDSHRKDRRVNEALDIFSYMKVKGIS-------PDIFTYNSLIQGLCNFSQWKEAS 293

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L  EM+   I  + +        +CK+ K+ EA  +L+ M + G+ P + TY+ L+ GY
Sbjct: 294 ALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGY 353

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---- 228
            L  +V  A  LFD+M  KG  PDVFSY++LINGYCK   ++EA  +  EMI  G     
Sbjct: 354 SLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNN 413

Query: 229 -------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                              + +F  M     +P  FT +I +DG CK G+  +   LF  
Sbjct: 414 VSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRA 473

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           ++ +  +  + ++N LI   CK G    A +LF++L  K L  +   Y  +I+ L KEG 
Sbjct: 474 MQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGL 533

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + +      +MEE+GC  D  ++N ++  FL  +
Sbjct: 534 LDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHK 567



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 160/348 (45%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T + LI  F     +  A  ++ K+   G +P + T  TLI  L + G     ++L 
Sbjct: 132 NIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELF 191

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC---- 138
            +MV          +P+V+ Y ++I+GLCK         L  +M++ G   N +      
Sbjct: 192 DDMV------ARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTII 245

Query: 139 ----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K  ++ EA  +   M  +G++P IFTY  L+ G C   +   A AL + M     M
Sbjct: 246 DSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIM 305

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ +++VL++  CK   V EA  V + M   G            V P+  T +  + G 
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMG------------VEPDVVTYSSLMYGY 353

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
                V+E  +LF  +    C+  V  +N LI G CK    + A +LFN++  + L  + 
Sbjct: 354 SLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNN 413

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V+YN LIH L + G +++   L  +M  NG   ++ T++ L+  F ++
Sbjct: 414 VSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQ 461


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 178/369 (48%), Gaps = 62/369 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A    G  I+  + P + VTF+SLI G C E     A +   +M   G +PN+ T +T+I
Sbjct: 138 AFSVLGKIIKLGFEP-DAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTII 196

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G   + + L ++M    G      +P++  Y ++IDGLCKDRLV +  D+F E+
Sbjct: 197 KGFCKIGKTTVAVGLLKKMDKAGG------RPDIVIYNTIIDGLCKDRLVSEALDIFSEI 250

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
           K KG+  +                                             LCK+  L
Sbjct: 251 KGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGML 310

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA  ++++M+++G+ P   TY  L+NGYCL  KV  A  +FD+M  KG MP+V SY++L
Sbjct: 311 SEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNIL 370

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           INGYCK   ++EA            +++F+EM    ++P TF  N  I GLC+ G   E 
Sbjct: 371 INGYCKAQRIDEA------------RELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEA 418

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
            ELF  ++   C   +     L+   CK G  + A  LF  +    L  ++V Y+ILI A
Sbjct: 419 RELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRA 478

Query: 324 LGKEGQIKK 332
           + K G+I +
Sbjct: 479 MYKSGKIYR 487



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 155/359 (43%), Gaps = 39/359 (10%)

Query: 35  CMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGG 94
           C   NI DA      M      P +   D L++ L R  +    L L + +     +   
Sbjct: 60  CSLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRI-----ELLR 114

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEA 146
           I + +VF +  LI+   + + VD    +  ++   G   + +        LC + K   A
Sbjct: 115 IER-DVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARA 173

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
               + M+  G  P + TY  ++ G+C +GK  VA+ L   M + G  PD+  Y+ +I+G
Sbjct: 174 MEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDG 233

Query: 207 YCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVPE 243
            CK+  V EA+++  E+   G +                        +FNEM   N++P+
Sbjct: 234 LCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPD 293

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG-CCKFGIFEIASELF 302
             T NI +D LCK G + E   +   +     E     +NSL+ G C +  +FE A  +F
Sbjct: 294 VVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFE-ARMVF 352

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           + +  K  + +VV+YNILI+   K  +I +   L   M   G   +   +NTL+    Q
Sbjct: 353 DAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQ 411


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 204/425 (48%), Gaps = 73/425 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++  A+      +   YRP + +TF +LI G  +     +A  LV +M   GC+PN+ T 
Sbjct: 132 RISDAVALVDQMVEMGYRP-DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 190

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             ++ GL + G+ +L L L  +M           + +V  + ++ID LCK R VD   +L
Sbjct: 191 GVVVNGLCKRGDTDLALNLLNKME------AAKIEADVVIFNTIIDSLCKYRHVDDALNL 244

Query: 123 FMEMKDKGINANTL--------LC-----------------------------------K 139
           F EM+ KGI  N +        LC                                   K
Sbjct: 245 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 304

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           + K VEA +L + M++R ++P IFTY  L+NG+C+  +++ A  +F+ M  K   PDV +
Sbjct: 305 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVT 364

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMK 236
           Y+ LI G+CK+  VE+   + REM   G                        +K+F +M 
Sbjct: 365 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 424

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              V P+  T +I +DGLC NG + + +E+F  ++ S  +L + I+ ++I G CK G  +
Sbjct: 425 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 484

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +LF  LS K +  +VV YN +I  L  +  +++   LL  M+E+G   +  T+NTL+
Sbjct: 485 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLI 544

Query: 357 ISFLQ 361
            + L+
Sbjct: 545 RAHLR 549



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 143/295 (48%), Gaps = 25/295 (8%)

Query: 81  LHQ-EMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD----KGI 131
           LH  ++ + +G FGG+ K    P++  +  L+  + K +  D    L  +M+      G+
Sbjct: 23  LHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGL 82

Query: 132 NANTLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
               +L    C+++++  A  LL  MM+ G  P I T + LLNGYC   +++ A+AL D 
Sbjct: 83  YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 142

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M   G+ PD  +++ LI+G   +    EA+ +   M+  G +            P   T 
Sbjct: 143 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ------------PNLVTY 190

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
            + ++GLCK G     + L   +E +  E  V IFN++I   CK+   + A  LF ++  
Sbjct: 191 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 250

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           K +  +VV Y+ LI  L   G+    + LL  M E     ++ TFN L+ +F+++
Sbjct: 251 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 305



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 159/366 (43%), Gaps = 29/366 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           K+  A+  FG  ++   RPL   V FN L+              L +KM        + T
Sbjct: 27  KLDDAIGLFGGMVKS--RPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYT 84

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            + LI    R   ++L L L  +M+  +G     Y+P++    SL++G C  + +     
Sbjct: 85  YNILINCFCRRSQISLALALLGKMMK-LG-----YEPSIVTLSSLLNGYCHGKRISDAVA 138

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  +M + G   +T+        L    K  EA  L++ M+QRG  P + TY  ++NG C
Sbjct: 139 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 198

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G  ++A+ L + M       DV  ++ +I+  CK  +V++A+N            +F 
Sbjct: 199 KRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN------------LFK 246

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM+   + P   T +  I  LC  G   +  +L   +        +  FN+LI    K G
Sbjct: 247 EMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 306

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
            F  A +L++ +  +++  D+  YN L++      ++ K   +   M    C  DV T+N
Sbjct: 307 KFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYN 366

Query: 354 TLMISF 359
           TL+  F
Sbjct: 367 TLIKGF 372



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 14/207 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LIKGFC    + D ++L ++M+  G   +  T  TLI GL   G+ +   K+ ++
Sbjct: 363 VTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 422

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV+      G+  P++  Y  L+DGLC +  +++  ++F  M+   I  +          
Sbjct: 423 MVSD-----GV-PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 476

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +CK  K+ +   L   +  +G+ P + TY  +++G C    +  A AL   M   G +P+
Sbjct: 477 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 536

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM 223
             +Y+ LI  + ++ +   +  + REM
Sbjct: 537 SGTYNTLIRAHLRDGDKAASAELIREM 563



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N++I G C +  +++A  L+KKM   G  PN  T +TLI    R G+   + +L 
Sbjct: 501 NVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELI 560

Query: 83  QEM 85
           +EM
Sbjct: 561 REM 563


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 187/370 (50%), Gaps = 25/370 (6%)

Query: 2   SKVLGALMA-FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           S  LGA M  F   + R + P + VT+N+LI   C  G++ +A +L   M++ GC PNV 
Sbjct: 50  SNDLGAGMELFEELVERGHHP-DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVV 108

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   LI GL + G ++   +L QEM     D      PN+  Y S +DGLCK  +  +  
Sbjct: 109 TYSVLINGLCKVGRIDEARELIQEMTRKSCDV----LPNIITYNSFLDGLCKQSMTAEAC 164

Query: 121 DLFMEMKDKG--INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
           +L   ++D    ++ +T+        LCK  ++ EA  + + M+  G  P + TY  L+N
Sbjct: 165 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 224

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
           G C   K+  A A+ +SM  KG  PDV +YSVL++ +CK   V+EA+ +   M   G   
Sbjct: 225 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 284

Query: 231 IFNEMKLCNV-VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                   NV VP+  T NI I G CK G+  +   LF  +   N +  V  F +LI G 
Sbjct: 285 --------NVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGL 336

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G  E A ++ + +    +  +VV YN L+H L K G+I++    L  M  +GC  D 
Sbjct: 337 CKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDS 396

Query: 350 DTFNTLMISF 359
            T+ +L+ + 
Sbjct: 397 ITYGSLVYAL 406



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 176/377 (46%), Gaps = 59/377 (15%)

Query: 27  FNSLIKGFCMEGNIRDASQLVK-KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +N +++  C  G+   A ++ + +MA  G  P + T +T+I GL ++ ++   ++L +E+
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 86  VN------------------GMGDFGGIYK-----------PNVFCYGSLIDGLCKDRLV 116
           V                     GD     +           PNV  Y  LI+GLCK   +
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 117 DQTKDLFMEMKDKG-------INANTL---LCKKTKLVEANRLLELMMQRGL--NPVIFT 164
           D+ ++L  EM  K        I  N+    LCK++   EA  L+  +    L  +P   T
Sbjct: 124 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 183

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           ++ L++G C  G+++ A ++FD M   G++P+V +Y+ L+NG CK   +E A  +   M+
Sbjct: 184 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV 243

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI--- 281
             G            V P+  T ++ +D  CK   V E +EL   +    C   V +   
Sbjct: 244 DKG------------VTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDK 291

Query: 282 --FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             FN LI G CK G FE AS LF ++  KNL  DV+ +  LI  L K GQ++    +L  
Sbjct: 292 VTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDL 351

Query: 340 MEENGCALDVDTFNTLM 356
           M   G   +V T+N L+
Sbjct: 352 MGNLGVPPNVVTYNALV 368



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 150/347 (43%), Gaps = 31/347 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VTF++LI G C  G I +A  +   M   G  PNV T + L+ GL +   M    + H
Sbjct: 180 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKME---RAH 236

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
             M+  M D G    P+V  Y  L+D  CK   VD+  +L   M  +G   N L+     
Sbjct: 237 A-MIESMVDKG--VTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVT 293

Query: 138 --------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                   CK     +A+ L E M+ + L P + T+  L++G C  G+V  A  + D M 
Sbjct: 294 FNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMG 353

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
             G  P+V +Y+ L++G CK+  +EEA     EM+ +G             VP++ T   
Sbjct: 354 NLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSG------------CVPDSITYGS 401

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            +  LC+     + ++L   L+    +     +N L+ G  K G  E A  +  ++  K 
Sbjct: 402 LVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKG 461

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              D   +      L + G +     LL  +   G   D  T ++++
Sbjct: 462 HQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 508



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 136/268 (50%), Gaps = 21/268 (7%)

Query: 103 YGSLIDGLCKDRLVDQTKDLFM-EMKDKGINA-----NTL---LCKKTKLVEANRLLELM 153
           Y  ++  LC+     +  ++F  EM   G+       NT+   LCK   L     L E +
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           ++RG +P + TY  L++  C  G +  A  L   M+ +G +P+V +YSVLING CK   +
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           +EA  + +EM            K C+V+P   T N F+DGLCK     E  EL  +L   
Sbjct: 124 DEARELIQEMT----------RKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDG 173

Query: 274 NCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
           +  +  +   F++LI G CK G  + A  +F+ +     V +V+ YN L++ L K  +++
Sbjct: 174 SLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKME 233

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
           + + ++ SM + G   DV T++ L+ +F
Sbjct: 234 RAHAMIESMVDKGVTPDVITYSVLVDAF 261



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 42/283 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT-----LITGLRRTGNMNLTL 79
           +T++ L+  FC    + +A +L+  MA+ GC PNV   D      LI G  + GN     
Sbjct: 252 ITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQAS 311

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            L +EMV          +P+V  +G+LIDGLCK   V+  +D+   M + G+  N +   
Sbjct: 312 ALFEEMV------AKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYN 365

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  ++ EA + LE M+  G  P   TY  L+   C   + + A+ L   +   
Sbjct: 366 ALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSF 425

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------IFNE 234
           G+ PD  +Y++L++G  K+   E+A+ V  EM+  G +                  +   
Sbjct: 426 GWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGT 485

Query: 235 MKLCNVV------PETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
           M+L  VV      P+  TC+  +D +C++G + +V  +    E
Sbjct: 486 MELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKEFE 528



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 14/173 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+N+L+ G C  G I +A Q +++M + GC P+  T  +L+  L R    +  L+
Sbjct: 358 PPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQ 417

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  E+ +    FG  + P+   Y  L+DGL K    +Q   +  EM  KG   ++     
Sbjct: 418 LVSELKS----FG--WDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAA 471

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
               L +   L     LL +++ +G+ P   T + +L+  C  GK++   A+ 
Sbjct: 472 CFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMI 524


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/419 (32%), Positives = 207/419 (49%), Gaps = 83/419 (19%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCME--GNIRDASQLVKKMATFG-CRPN 58
            K+L AL  +   + R  R  +DV + +LI G C    G  R A QL++KM      +PN
Sbjct: 138 DKMLDALYIYDEMVARRIR-FDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPN 196

Query: 59  VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK------ 112
           +   +T++ GL + GN+N    L  +M+       GI+ P++F Y SLI GLC+      
Sbjct: 197 LIMYNTVVHGLCKDGNINEARVLCSKMI-----VQGIF-PDIFTYSSLIYGLCRAGQRKE 250

Query: 113 ----------DRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMM 154
                     +  VD+ ++LF  M ++G     IN N L+   C   K+ EA +L  +M+
Sbjct: 251 VTSLLNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMV 310

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           +RG  P   TYT L++GYCL+ KV+ A  LF  M  +G +PDV+SY++LI GYCK   V 
Sbjct: 311 ERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVG 370

Query: 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF------- 267
           EAMN+  +M L             N+VP   T N  +DGLCK+G +L+  +L        
Sbjct: 371 EAMNLLEDMFLK------------NLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCC 418

Query: 268 -PTLEISNCELFVEI-----------------------------FNSLIRGCCKFGIFEI 297
            P  +++   + +E                              +N LI GCCK    + 
Sbjct: 419 QPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDE 478

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A  LFN +  KNLV D+V YNIL+ AL    Q+ K   LL+ + + G + ++ T+N L+
Sbjct: 479 AINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILI 537



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 102/197 (51%), Gaps = 18/197 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRP--NVTTCDTLITGLRRTGNMNLTLK 80
           N +T+NS++ G C  G I DA +LV +M  + C+P  +VTT + L+  L R   +   + 
Sbjct: 387 NIITYNSVVDGLCKSGGILDAWKLVDEMH-YCCQPPPDVTTYNILLESLCRIECVEKAIA 445

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
             + ++     F   + PNV+ Y  LI G CK+R +D+  +LF  M  K +  + +    
Sbjct: 446 FFKHLI-----FERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNI 500

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               L    +L +A  LL  ++ +G++P + TY  L+NG    G+   A  +   ++ +G
Sbjct: 501 LLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKISLYLSIRG 560

Query: 193 FMPDVFSYSVLINGYCK 209
           + PDV +Y  +IN  CK
Sbjct: 561 YHPDVKTY--IINELCK 575



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 126/301 (41%), Gaps = 54/301 (17%)

Query: 111 CKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVI 162
           CK   +D    LF  M D     + +        + K      A  L  LM  +G+ P  
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFT 89

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            T+  L+N +C +G+++ A ++   + + G  P+V +++ L+ G+C N  + +A+ +  E
Sbjct: 90  VTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDE 149

Query: 223 MI--------------LNGFKK-----------IFNEMKLCNVV-PETFTCNIFIDGLCK 256
           M+              +NG  K           +  +M+   +V P     N  + GLCK
Sbjct: 150 MVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCK 209

Query: 257 NGHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCKFGI----------------FEIA 298
           +G++ E   L   + +    +F +IF  +SLI G C+ G                  + A
Sbjct: 210 DGNINEARVLCSKMIVQG--IFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEA 267

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            ELFN +  +    D++ YNIL++      ++ +   L   M E G   D  T+  LM  
Sbjct: 268 RELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHG 327

Query: 359 F 359
           +
Sbjct: 328 Y 328


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 204/425 (48%), Gaps = 73/425 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++  A+      +   YRP + +TF +LI G  +     +A  LV +M   GC+PN+ T 
Sbjct: 170 RISDAVALVDQMVEMGYRP-DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 228

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             ++ GL + G+ +L L L  +M           + +V  + ++ID LCK R VD   +L
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKME------AAKIEADVVIFNTIIDSLCKYRHVDDALNL 282

Query: 123 FMEMKDKGINANTL--------LC-----------------------------------K 139
           F EM+ KGI  N +        LC                                   K
Sbjct: 283 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           + K VEA +L + M++R ++P IFTY  L+NG+C+  +++ A  +F+ M  K   PDV +
Sbjct: 343 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVT 402

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMK 236
           Y+ LI G+CK+  VE+   + REM   G                        +K+F +M 
Sbjct: 403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              V P+  T +I +DGLC NG + + +E+F  ++ S  +L + I+ ++I G CK G  +
Sbjct: 463 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 522

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +LF  LS K +  +VV YN +I  L  +  +++   LL  M+E+G   +  T+NTL+
Sbjct: 523 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLI 582

Query: 357 ISFLQ 361
            + L+
Sbjct: 583 RAHLR 587



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 143/295 (48%), Gaps = 25/295 (8%)

Query: 81  LHQ-EMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD----KGI 131
           LH  ++ + +G FGG+ K    P++  +  L+  + K +  D    L  +M+      G+
Sbjct: 61  LHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGL 120

Query: 132 NANTLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
               +L    C+++++  A  LL  MM+ G  P I T + LLNGYC   +++ A+AL D 
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M   G+ PD  +++ LI+G   +    EA+ +   M+  G +            P   T 
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ------------PNLVTY 228

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
            + ++GLCK G     + L   +E +  E  V IFN++I   CK+   + A  LF ++  
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           K +  +VV Y+ LI  L   G+    + LL  M E     ++ TFN L+ +F+++
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 343



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 159/366 (43%), Gaps = 29/366 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           K+  A+  FG  ++   RPL   V FN L+              L +KM        + T
Sbjct: 65  KLDDAIGLFGGMVKS--RPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYT 122

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            + LI    R   ++L L L  +M+  +G     Y+P++    SL++G C  + +     
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMK-LG-----YEPSIVTLSSLLNGYCHGKRISDAVA 176

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  +M + G   +T+        L    K  EA  L++ M+QRG  P + TY  ++NG C
Sbjct: 177 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 236

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G  ++A+ L + M       DV  ++ +I+  CK  +V++A+N            +F 
Sbjct: 237 KRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN------------LFK 284

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM+   + P   T +  I  LC  G   +  +L   +        +  FN+LI    K G
Sbjct: 285 EMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 344

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
            F  A +L++ +  +++  D+  YN L++      ++ K   +   M    C  DV T+N
Sbjct: 345 KFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYN 404

Query: 354 TLMISF 359
           TL+  F
Sbjct: 405 TLIKGF 410



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 14/207 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LIKGFC    + D ++L ++M+  G   +  T  TLI GL   G+ +   K+ ++
Sbjct: 401 VTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 460

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV+      G+  P++  Y  L+DGLC +  +++  ++F  M+   I  +          
Sbjct: 461 MVSD-----GV-PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 514

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +CK  K+ +   L   +  +G+ P + TY  +++G C    +  A AL   M   G +P+
Sbjct: 515 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 574

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM 223
             +Y+ LI  + ++ +   +  + REM
Sbjct: 575 SGTYNTLIRAHLRDGDKAASAELIREM 601



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N++I G C +  +++A  L+KKM   G  PN  T +TLI    R G+   + +L 
Sbjct: 539 NVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELI 598

Query: 83  QEM 85
           +EM
Sbjct: 599 REM 601


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/419 (30%), Positives = 203/419 (48%), Gaps = 73/419 (17%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
               ++R Y P + VT N+LIKG C++G ++ A     K+   G + N  +  TLI G+ 
Sbjct: 117 LAKILKRGYPP-DTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVC 175

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G+    +KL Q++       G + KPNV  Y ++ID LCK +LV +   LF EM  KG
Sbjct: 176 KIGDTRAAIKLLQKID------GRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKG 229

Query: 131 INANTL-------------------------------------------LCKKTKLVEAN 147
           I+A+ +                                           LCK+ K+ EA 
Sbjct: 230 ISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAK 289

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L +M++  + P + TY+ L++GY LV +V  A  +F++M+  G  PDV +Y++LING+
Sbjct: 290 SVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349

Query: 208 CKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEMKLCNVVPET 244
           CKN  V+EA+N+ +EM              +++G  K         + +EM         
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANV 409

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T +  IDGLCKNGH+   + LF  ++          F  L+ G CK G  + A E+F  
Sbjct: 410 ITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQD 469

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           L  K    +V  YN++I    K+G +++   +L  ME+NGC  D  TF  ++I+  +K+
Sbjct: 470 LLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFKKD 528



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 157/313 (50%), Gaps = 26/313 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+++LI GFC+EG +++A  L+ +M      PNV T + L+  L + G +     +   
Sbjct: 235 VTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAV 294

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLL--- 137
           M+          KP+V  Y +L+DG      V + + +F  M   G+  +    T+L   
Sbjct: 295 MLKA------CVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING 348

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   + EA  L + M Q+ + P I TY+ L++G C  G++     L D M  +G   +
Sbjct: 349 FCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPAN 408

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +YS LI+G CKN +++ A+             +FN+MK   + P TFT  I +DGLCK
Sbjct: 409 VITYSSLIDGLCKNGHLDRAI------------ALFNKMKDQGIRPNTFTFTILLDGLCK 456

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + +  E+F  L      L V  +N +I G CK G+ E A  + +K+     + D V 
Sbjct: 457 GGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVT 516

Query: 317 YNILIHALGKEGQ 329
           + I+I AL K+ +
Sbjct: 517 FEIIIIALFKKDE 529



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 112/217 (51%), Gaps = 14/217 (6%)

Query: 149  LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
            +L  +++RG +P   T+T L+NG CL G+VN A+   D +  +GF  +  SY  LING C
Sbjct: 983  ILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVC 1042

Query: 209  KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
            K  +   A+ + R++          + +L    P+    N  ID LCK+  V +   LF 
Sbjct: 1043 KIGDTRAAIKLLRKI----------DGRLTK--PDVVMYNTIIDALCKHQLVSKAYGLFF 1090

Query: 269  TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
             + +      V  +N+LI G C  G  + A  L NK+  K +  +V  YNIL+ AL KEG
Sbjct: 1091 EMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEG 1150

Query: 329  Q--IKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +  + +   +L  ME+NGC  +  TF  ++ +  +K+
Sbjct: 1151 KDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKD 1187



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 110/221 (49%), Gaps = 36/221 (16%)

Query: 11   FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
                ++R Y P + +TF +LI G C++G +  A     K+   G + N  +  TLI G+ 
Sbjct: 984  LAKILKRGYHP-DTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVC 1042

Query: 71   RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
            + G+    +KL +++       G + KP+V  Y ++ID LCK +LV +   LF EM  KG
Sbjct: 1043 KIGDTRAAIKLLRKID------GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKG 1096

Query: 131  INANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
            I+A+                           + TY  L+ G+C+VGK+  AI L + M  
Sbjct: 1097 ISAD---------------------------VVTYNTLIYGFCIVGKLKEAIGLLNKMVL 1129

Query: 191  KGFMPDVFSYSVLINGYCKNFN--VEEAMNVSREMILNGFK 229
            K   P+V +Y++L++  CK     ++E++++  +M  NG K
Sbjct: 1130 KTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCK 1170



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 122/272 (44%), Gaps = 20/272 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           + P +  +  ++D   K +       L   ++ KGI  + +         C   ++    
Sbjct: 55  HTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L  +++RG  P   T   L+ G CL G+V  A+   D +  +GF  +  SY  LING 
Sbjct: 115 SVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGV 174

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK  +   A+ +         +KI   +   NVV      +  ID LCK   V E   LF
Sbjct: 175 CKIGDTRAAIKL--------LQKIDGRLTKPNVV----MYSTIIDALCKYQLVSEAYGLF 222

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             + +      V  +++LI G C  G  + A  L N++  K +  +V  YNIL+ AL KE
Sbjct: 223 SEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKE 282

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           G++K+   +L  M +     DV T++TLM  +
Sbjct: 283 GKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 12/181 (6%)

Query: 179  NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
            + A++L   +  KG  PD+F+ ++LIN +C    +    ++  +++  G+          
Sbjct: 943  STAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYH--------- 993

Query: 239  NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
               P+T T    I+GLC  G V + +     L     +L    + +LI G CK G    A
Sbjct: 994  ---PDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAA 1050

Query: 299  SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
             +L  K+  +    DVV YN +I AL K   + K   L   M   G + DV T+NTL+  
Sbjct: 1051 IKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYG 1110

Query: 359  F 359
            F
Sbjct: 1111 F 1111



 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            VT+N+LI GFC+ G +++A  L+ KM      PNV T + L+  L + G   L   L   
Sbjct: 1102 VTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESL--S 1159

Query: 85   MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
            M++ M D G   K N   +  +I  L +    D+ + L  EM  +G+
Sbjct: 1160 MLSKMEDNG--CKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 47/125 (37%)

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           FN M      P     N  +D   K  H    + L   LE+   +  +   N LI   C 
Sbjct: 47  FNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCH 106

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G       +  K+  +    D V  N LI  L  +GQ+KK  +    +   G  L+  +
Sbjct: 107 MGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVS 166

Query: 352 FNTLM 356
           + TL+
Sbjct: 167 YGTLI 171


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 123/425 (28%), Positives = 204/425 (48%), Gaps = 73/425 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++  A+      +   YRP + +TF +LI G  +     +A  LV +M   GC+PN+ T 
Sbjct: 94  RISDAVALVDQMVEMGYRP-DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 152

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             ++ GL + G+++L   L  +M           + +V  + ++ID LCK R VD   +L
Sbjct: 153 GVVVNGLCKRGDIDLAFNLLNKME------AAKIEADVVIFNTIIDSLCKYRHVDDALNL 206

Query: 123 FMEMKDKGINANTL--------LC-----------------------------------K 139
           F EM+ KGI  N +        LC                                   K
Sbjct: 207 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 266

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           + K VEA +L + M++R ++P IFTY  L+NG+C+  +++ A  +F+ M  K   PD+ +
Sbjct: 267 EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDT 326

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMK 236
           Y+ LI G+CK+  VE+   + REM   G                        +K+F +M 
Sbjct: 327 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 386

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              V P+  T +I +DGLC NG + + +E+F  ++ S  +L + I+ ++I G CK G  +
Sbjct: 387 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 446

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +LF  LS K +  +VV YN +I  L  +  +++   LL  M+E+G   D  T+NTL+
Sbjct: 447 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLI 506

Query: 357 ISFLQ 361
            + L+
Sbjct: 507 RAHLR 511



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 128/280 (45%), Gaps = 41/280 (14%)

Query: 87  NGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
           + +G FGG+ K    P++F +  L+  + K                          KK  
Sbjct: 25  DAIGLFGGMVKSRPLPSIFEFNKLLSAIAK-------------------------MKKFD 59

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           LV +  LL  MM+ G  P I T + LLNGYC   +++ A+AL D M   G+ PD  +++ 
Sbjct: 60  LVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 119

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI+G   +    EA+ +   M+  G +            P   T  + ++GLCK G +  
Sbjct: 120 LIHGLFLHNKASEAVALVDRMVQRGCQ------------PNLVTYGVVVNGLCKRGDIDL 167

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
              L   +E +  E  V IFN++I   CK+   + A  LF ++  K +  +VV Y+ LI 
Sbjct: 168 AFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLIS 227

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            L   G+    + LL  M E     ++ TFN L+ +F+++
Sbjct: 228 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 267



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 16/216 (7%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           + C+  L+  T+N+LIKGFC    + D ++L ++M+  G   +  T  TLI GL   G+ 
Sbjct: 318 KDCFPDLD--TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 375

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           +   K+ ++MV+      G+  P++  Y  L+DGLC +  +++  ++F  M+   I  + 
Sbjct: 376 DNAQKVFKQMVSD-----GV-PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 429

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                    +CK  K+ +   L   +  +G+ P + TY  +++G C    +  A AL   
Sbjct: 430 YIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 489

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           M   G +PD  +Y+ LI  + ++ +   +  + REM
Sbjct: 490 MKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 525


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 123/425 (28%), Positives = 204/425 (48%), Gaps = 73/425 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++  A+      +   YRP + +TF +LI G  +     +A  LV +M   GC+PN+ T 
Sbjct: 95  RISDAVALVDQMVEMGYRP-DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 153

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             ++ GL + G+++L   L  +M           + +V  + ++ID LCK R VD   +L
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKME------AAKIEADVVIFNTIIDSLCKYRHVDDALNL 207

Query: 123 FMEMKDKGINANTL--------LC-----------------------------------K 139
           F EM+ KGI  N +        LC                                   K
Sbjct: 208 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 267

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           + K VEA +L + M++R ++P IFTY  L+NG+C+  +++ A  +F+ M  K   PD+ +
Sbjct: 268 EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDT 327

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMK 236
           Y+ LI G+CK+  VE+   + REM   G                        +K+F +M 
Sbjct: 328 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              V P+  T +I +DGLC NG + + +E+F  ++ S  +L + I+ ++I G CK G  +
Sbjct: 388 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 447

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +LF  LS K +  +VV YN +I  L  +  +++   LL  M+E+G   D  T+NTL+
Sbjct: 448 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLI 507

Query: 357 ISFLQ 361
            + L+
Sbjct: 508 RAHLR 512



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 132/273 (48%), Gaps = 20/273 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++F +  L+  + K +  D    L  +M+  GI+ N           C+++++  A  L
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  MM+ G  P I T + LLNGYC   +++ A+AL D M   G+ PD  +++ LI+G   
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           +    EA+ +   M+  G +            P   T  + ++GLCK G +     L   
Sbjct: 128 HNKASEAVALVDRMVQRGCQ------------PNLVTYGVVVNGLCKRGDIDLAFNLLNK 175

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +E +  E  V IFN++I   CK+   + A  LF ++  K +  +VV Y+ LI  L   G+
Sbjct: 176 MEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR 235

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
               + LL  M E     ++ TFN L+ +F+++
Sbjct: 236 WSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 268



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 153/349 (43%), Gaps = 27/349 (7%)

Query: 20  RPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           RPL  +  FN L+              L +KM   G   N+ T + LI    R   ++L 
Sbjct: 5   RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 64

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           L L  +M+  +G     Y+P++    SL++G C  + +     L  +M + G   +T+  
Sbjct: 65  LALLGKMMK-LG-----YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITF 118

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 L    K  EA  L++ M+QRG  P + TY  ++NG C  G +++A  L + M  
Sbjct: 119 TTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA 178

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
                DV  ++ +I+  CK  +V++A+N            +F EM+   + P   T +  
Sbjct: 179 AKIEADVVIFNTIIDSLCKYRHVDDALN------------LFKEMETKGIRPNVVTYSSL 226

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           I  LC  G   +  +L   +        +  FN+LI    K G F  A +L + +  +++
Sbjct: 227 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             D+  YN LI+      ++ K   +   M    C  D+DT+NTL+  F
Sbjct: 287 DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGF 335



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 16/216 (7%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           + C+  L+  T+N+LIKGFC    + D ++L ++M+  G   +  T  TLI GL   G+ 
Sbjct: 319 KDCFPDLD--TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 376

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           +   K+ ++MV+      G+  P++  Y  L+DGLC +  +++  ++F  M+   I  + 
Sbjct: 377 DNAQKVFKQMVSD-----GV-PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 430

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                    +CK  K+ +   L   +  +G+ P + TY  +++G C    +  A AL   
Sbjct: 431 YIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 490

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           M   G +PD  +Y+ LI  + ++ +   +  + REM
Sbjct: 491 MKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 526


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 126/419 (30%), Positives = 208/419 (49%), Gaps = 73/419 (17%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
               ++R Y P + VT N+LIKG C++G ++ A     K+   G + N  +  TLI G+ 
Sbjct: 117 LAKILKRGYPP-DTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVC 175

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G+    +KL +++       G + KPNV  Y ++ID LCK +LV +   LF EM  KG
Sbjct: 176 KIGDTRGAIKLLRKID------GRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKG 229

Query: 131 INANTL-------------------------------------------LCKKTKLVEAN 147
           I+A+ +                                           LCK+ K+ EA 
Sbjct: 230 ISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAK 289

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L +M++  + P + TY+ L++GY LV +V  A  +F++M+  G  PDV +Y++LING+
Sbjct: 290 SVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349

Query: 208 CKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEMKLCNVVPET 244
           CKN  V+EA+N+ +EM              +++G  K         + +EM+      + 
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADV 409

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T +  IDGLCKNGH+   + LF  ++       +  F  L+ G CK G  + A E+F  
Sbjct: 410 ITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQD 469

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           L  K    +V  YN++I+   K+G +++   +L  ME+NGC  +  TF T++I+  +K+
Sbjct: 470 LLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKD 528



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 159/328 (48%), Gaps = 26/328 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+++LI GFC+EG +++A  L+ +M      PNV T + L+  L + G +     +   
Sbjct: 235 VTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAV 294

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLL--- 137
           M+          KP+V  Y +L+DG      V + + +F  M   G+  +    T+L   
Sbjct: 295 MLKA------CVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING 348

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   + EA  L + M Q+ + P I TY+ L++G C  G++     L D M  +G   D
Sbjct: 349 FCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPAD 408

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +YS LI+G CKN +++ A+             +FN+MK   + P  FT  I +DGLCK
Sbjct: 409 VITYSSLIDGLCKNGHLDRAI------------ALFNKMKDQEIRPNIFTFTILLDGLCK 456

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + +  E+F  L      L V  +N +I G CK G+ E A  + +K+     + +   
Sbjct: 457 GGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFT 516

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
           +  +I AL K+ +  K   LL  M   G
Sbjct: 517 FETIIIALFKKDENDKAEKLLRQMIARG 544



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 147/297 (49%), Gaps = 26/297 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+   C EG +++A  ++  M     +P+V T  TL+ G      +   +K  
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYF----LVYEVKKA 323

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           Q + N M   G    P+V  Y  LI+G CK+++VD+  +LF EM  K +    +      
Sbjct: 324 QHVFNAMSLMG--VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++     L++ M  RG    + TY+ L++G C  G ++ AIALF+ M  +   
Sbjct: 382 DGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIR 441

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P++F++++L++G CK   +++A  V ++++  G+          NV    +T N+ I+G 
Sbjct: 442 PNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYH--------LNV----YTYNVMINGH 489

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           CK G + E + +   +E + C      F ++I    K    + A +L  ++  + L+
Sbjct: 490 CKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 123/269 (45%), Gaps = 20/269 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           + P +  +  ++D   K +       L   ++ KGI  + +         C   ++    
Sbjct: 55  HTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L  +++RG  P   T   L+ G CL G+V  A+   D +  +GF  +  SY+ LING 
Sbjct: 115 SVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGV 174

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK  +   A+ + R        KI   +   NV  E ++    ID LCK   V E   LF
Sbjct: 175 CKIGDTRGAIKLLR--------KIDGRLTKPNV--EMYST--IIDALCKYQLVSEAYGLF 222

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             + +      V  +++LI G C  G  + A  L N++  K +  +V  YNIL+ AL KE
Sbjct: 223 SEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKE 282

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
           G++K+   +L  M +     DV T++TLM
Sbjct: 283 GKVKEAKSVLAVMLKACVKPDVITYSTLM 311



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 14/201 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P I  +  +L+ +  +   + A++L   +  KG  PD+ + ++LIN +C    +    +V
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             +++  G+             P+T T N  I GLC  G V + +     L     +L  
Sbjct: 117 LAKILKRGYP------------PDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQ 164

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + +LI G CK G    A +L  K+  +    +V  Y+ +I AL K  Q+  E Y L S
Sbjct: 165 VSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKY-QLVSEAYGLFS 223

Query: 340 -MEENGCALDVDTFNTLMISF 359
            M   G + DV T++TL+  F
Sbjct: 224 EMTVKGISADVVTYSTLIYGF 244



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 14/147 (9%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           +P + +T++SLI G C  G++  A  L  KM     RPN+ T   L+ GL + G     L
Sbjct: 405 QPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGR----L 460

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           K  QE+   +   G  Y  NV+ Y  +I+G CK  L+++   +  +M+D G   N     
Sbjct: 461 KDAQEVFQDLLTKG--YHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFE 518

Query: 137 -----LCKKTKLVEANRLLELMMQRGL 158
                L KK +  +A +LL  M+ RGL
Sbjct: 519 TIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 47/125 (37%)

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           FN M      P     N  +D   K  H    + L   LE+   +  +   N LI   C 
Sbjct: 47  FNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCH 106

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G       +  K+  +    D V  N LI  L  +GQ+KK  +    +   G  L+  +
Sbjct: 107 MGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVS 166

Query: 352 FNTLM 356
           + TL+
Sbjct: 167 YATLI 171


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 195/396 (49%), Gaps = 63/396 (15%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
            G  ++  Y+P + +T N+L+KG C++G ++ +     K+   G + +  +  TL+ GL 
Sbjct: 68  LGKILKLGYQP-DTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLC 126

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G     +KL + M+          +PNV  Y ++IDGLCKD+LV++  DL+ EM  +G
Sbjct: 127 KIGETRCAVKLLR-MIEDRST-----RPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180

Query: 131 INANTL-------------------------------------------LCKKTKLVEAN 147
           I  + +                                           LCK+  + EA 
Sbjct: 181 IFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAK 240

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            LL +M + G+ P + TY+ L++GYCLVG+V  A  +F +M + G  P+V+SY+++ING 
Sbjct: 241 NLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGL 300

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK   V+EAMN+ REM+              N+VP+T T N  IDGLCK+G +   + L 
Sbjct: 301 CKCKRVDEAMNLLREMLHK------------NMVPDTVTYNSLIDGLCKSGRITSALNLM 348

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +        V  + SL+   CK    + A+ LF K+  + +   +  Y  LI  L K 
Sbjct: 349 NEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKG 408

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           G++K    L   +   GC +DV T+ T+MIS L KE
Sbjct: 409 GRLKNAQELFQHLLVKGCCIDVWTY-TVMISGLCKE 443



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 152/330 (46%), Gaps = 33/330 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +++GA       I +   P     +N LI   C EGN+++A  L+  M   G +P V T 
Sbjct: 200 QLMGAFSLLDEMILKNINP-GVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTY 258

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            TL+ G    G +    ++   MV  MG       PNV+ Y  +I+GLCK + VD+  +L
Sbjct: 259 STLMDGYCLVGEVQNAKQIFHAMVQ-MG-----VNPNVYSYNIMINGLCKCKRVDEAMNL 312

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM  K +  +T+        LCK  ++  A  L+  M  RG    + TYT LL+  C 
Sbjct: 313 LREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCK 372

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
              ++ A ALF  M  +G  P +++Y+ LI+G CK   ++ A  + + +++ G       
Sbjct: 373 NQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKG------- 425

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
              C +  + +T  + I GLCK G   E + +   +E + C      F  +IR   +   
Sbjct: 426 ---CCI--DVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDE 480

Query: 295 FEIASELFNKLSCKNL------VADVVAYN 318
            + A +L +++  K L      VADV   N
Sbjct: 481 NDKAEKLLHEMIAKGLLVLDFKVADVFVQN 510



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 122/272 (44%), Gaps = 20/272 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           + P +  +  ++  L K +       L  +M+ KGI AN +         C   ++  + 
Sbjct: 6   HTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSF 65

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L  +++ G  P   T   L+ G CL G+V  ++   D +  +GF  D  SY  L+NG 
Sbjct: 66  SVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGL 125

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK      A+ + R MI +   +           P     N  IDGLCK+  V E  +L+
Sbjct: 126 CKIGETRCAVKLLR-MIEDRSTR-----------PNVVMYNTIIDGLCKDKLVNEAYDLY 173

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             ++          + +LI G C  G    A  L +++  KN+   V  YNILI+AL KE
Sbjct: 174 SEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKE 233

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           G +K+   LL  M + G    V T++TLM  +
Sbjct: 234 GNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGY 265


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 196/399 (49%), Gaps = 62/399 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           +   F + +++ Y P + +T  +LIKG C++G+I  A     K+   G + N  +  TLI
Sbjct: 123 SFSVFSNILKKGYEP-DAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLI 181

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G     L    EM+  +   G + + +V  Y ++IDG+CKD+LV+   D + EM
Sbjct: 182 NGLCKVGQTKAAL----EMLRRID--GKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEM 235

Query: 127 KDKGI-----NANTLLC--------------------------------------KKTKL 143
             K I       NTL+C                                      K+ K+
Sbjct: 236 VAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKV 295

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA  +  +MM++ + P I TY  L+NGYCLV +VN A ++F++MA+ G  PDV SYS++
Sbjct: 296 KEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIM 355

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I+G+CK   V+EAM            K+F EM    + P+  T N  IDGLCK+G +   
Sbjct: 356 ISGFCKIKMVDEAM------------KLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYA 403

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           ++L   +        +  +NSL+   CK    + A EL  KL   N+   V  YNILI+ 
Sbjct: 404 LKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILING 463

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           L K G++K    +   +  NG  +DV T+NT++  F +K
Sbjct: 464 LCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKK 502



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 26/244 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF+ L+  FC EG +++A  +   M     +PN+ T ++L+ G      +N      + +
Sbjct: 281 TFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKA----ESI 336

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            N M   G    P+V  Y  +I G CK ++VD+   LF EM  K I  + +        L
Sbjct: 337 FNTMAQIG--VAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGL 394

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++  A +L+  M  RG  P I TY  LL+  C    V+ AI L   +      P V
Sbjct: 395 CKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSV 454

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y++LING CK+  +++A  V  ++++NG+          N+  + +T N  I G CK 
Sbjct: 455 CTYNILINGLCKSGRLKDAQKVFEDVLVNGY----------NI--DVYTYNTMIKGFCKK 502

Query: 258 GHVL 261
           G V+
Sbjct: 503 GFVI 506



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 16/226 (7%)

Query: 132 NANTLLCKKTKLVEA-NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           N+ TL  +   LV + N LL    Q+   P I  +  +L         ++ ++L   M  
Sbjct: 41  NSTTLYSQLHNLVSSFNHLLH---QKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEF 97

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G   ++ + S+LIN + +  +   + +V   ++  G++            P+  T    
Sbjct: 98  NGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYE------------PDAITLTTL 145

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           I GLC  G + + +     +     +L    + +LI G CK G  + A E+  ++  K +
Sbjct: 146 IKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLV 205

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             DVV YN +I  + K+  +         M        V T+NTL+
Sbjct: 206 RLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLI 251


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/409 (31%), Positives = 197/409 (48%), Gaps = 73/409 (17%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
            G+ ++    P + VTF  LI G C++G++  A +LV  +   G R +V T   LI GL 
Sbjct: 134 LGTMLKLGLEP-SVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLC 192

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G  +  +   ++M          + PNV  Y +++DGLCKD LV +   L +EM  KG
Sbjct: 193 KMGKTSEAVGWLRKMEERN------WNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKG 246

Query: 131 INAN-------------------------------------------TLLCKKTKLVEAN 147
           I  N                                            +LCK+ K+++A 
Sbjct: 247 IKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAK 306

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            ++  M+  G  P +FTY  L++ YCL  +++ A  +F+ M  +G +PD+ +Y+ LI+G+
Sbjct: 307 SVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGW 366

Query: 208 CKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLCNVVPET 244
           CK  N+ +AM++  EMI  GF                       K++F  M     VP  
Sbjct: 367 CKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNL 426

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            TC I +DGLCK+  + E + LF  +E SN +L + I++ ++ G C  G    A ELF+ 
Sbjct: 427 QTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSC 486

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           L  K L  +V AY I+I+   K+G + K   LL +MEENGC  D  T+N
Sbjct: 487 LPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYN 535



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 180/410 (43%), Gaps = 76/410 (18%)

Query: 19  YRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           YR  +DV T+  LI G C  G   +A   ++KM      PNV    T++ GL + G ++ 
Sbjct: 177 YR--SDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSE 234

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--- 134
            L L  EM +G G      KPN+  Y  LI GLC      +   L  EM   G+  +   
Sbjct: 235 ALGLCLEM-SGKG-----IKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQS 288

Query: 135 -----TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                 +LCK+ K+++A  ++  M+  G  P +FTY  L++ YCL  +++ A  +F+ M 
Sbjct: 289 LNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMV 348

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------------------- 228
            +G +PD+ +Y+ LI+G+CK  N+ +AM++  EMI  GF                     
Sbjct: 349 SRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPL 408

Query: 229 --KKIFNEMKLCNVVPETFTC-----------------------------------NIFI 251
             K++F  M     VP   TC                                   +I +
Sbjct: 409 AAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIIL 468

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           DG+C  G +   +ELF  L     ++ V  +  +I G  K G+ + A +L + +     +
Sbjct: 469 DGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCM 528

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            D   YN+ +  L  E +I +    L  M + G ++D  T   ++I++L 
Sbjct: 529 PDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATT-TEMIINYLS 577



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 163/356 (45%), Gaps = 38/356 (10%)

Query: 21  PLNDVTFNSLIKGFCME-GNIRDASQLVKKM-ATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           PL  V   +L+ GF ++  +   A  LVK+M ++ G +P+    + +I  L         
Sbjct: 71  PLPSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPDTFILNVVINSL--------- 121

Query: 79  LKLHQEMVN-GMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
              H ++V  G    G + K    P+V  +  LI+GLC    V +  +L   ++  G  +
Sbjct: 122 --CHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRS 179

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +          LCK  K  EA   L  M +R  NP +  Y+ +++G C  G V+ A+ L 
Sbjct: 180 DVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLC 239

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             M+ KG  P++ +Y+ LI G C     +EA ++  EM+  G            V+P+  
Sbjct: 240 LEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMG------------VMPDLQ 287

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           + NI +D LCK G +++   +   + +      V  +NSLI   C     + A+ +F  +
Sbjct: 288 SLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELM 347

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             +  + D+VAY  LIH   K   I K  +LL  M + G   DV T+ TL+  F Q
Sbjct: 348 VSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQ 403


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 188/391 (48%), Gaps = 37/391 (9%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +KV  A+  F   +R      N+V + +++ G C +G+ + A  L++ M     +PN  T
Sbjct: 156 NKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRT 215

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
              +I    + G ++    L  EM            P++F Y +LID LCK    +  + 
Sbjct: 216 YTIVIDAFCKDGMLDGATSLLNEMKQKS------IPPDIFTYSTLIDALCKLSQWENVRT 269

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF+EM    I  N          LCK+ K+ +A  ++  M+++G++P + TY  +++GY 
Sbjct: 270 LFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYG 329

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK--- 230
           L G+V+ A  +FDSM  K   PD+ SY++LINGY +   ++EAM V RE+   G K    
Sbjct: 330 LRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIV 389

Query: 231 --------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                                F+EM     +P+ +T    + G  KNG V E M  F  L
Sbjct: 390 TCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKL 449

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           E    +  ++I+ ++I G CK G  + A   F KL    L  DV+ Y  +I    +EG +
Sbjct: 450 ERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLL 509

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            +   +L  ME+NGC  D  T+N ++  FL+
Sbjct: 510 DEAKDMLRKMEDNGCLADNRTYNVIVRGFLR 540



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 17/230 (7%)

Query: 137 LCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
           L  + K+ +A  L + +++  +  P    Y  ++NG C  G    A  L   M +    P
Sbjct: 152 LFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKP 211

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           +  +Y+++I+ +CK            + +L+G   + NEMK  ++ P+ FT +  ID LC
Sbjct: 212 NTRTYTIVIDAFCK------------DGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALC 259

Query: 256 KNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           K      V  LF  LE+ +  ++  +  FNS+I G CK G  E A E+   +  K +  D
Sbjct: 260 KLSQWENVRTLF--LEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPD 317

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           V+ YN++I   G  GQ+ +   +  SM       D+ ++N L+  + +++
Sbjct: 318 VITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQK 367



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 110/213 (51%), Gaps = 15/213 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F S I +   P + +++N LI G+  +  I +A Q+ ++++  G +P++ TC+ L+ GL 
Sbjct: 341 FDSMINKSIEP-DIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLF 399

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
             G          EM++     G I  P+++ + +L+ G  K+ LV++    F +++ + 
Sbjct: 400 ELGRTKSAQNFFDEMLSA----GHI--PDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR 453

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
            + N          LCK  KL +A+   E +   GL+P + TYT +++GYC  G ++ A 
Sbjct: 454 EDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAK 513

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
            +   M   G + D  +Y+V++ G+ ++  V E
Sbjct: 514 DMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSE 546


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 124/423 (29%), Positives = 197/423 (46%), Gaps = 73/423 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   ++  Y P + +TF +L KG C++G I+ A     K+   G   +  +  TLI
Sbjct: 139 AFSVFAKILKMGYVP-DTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLI 197

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G     L L Q +       G + +PNV  Y ++ID +CK +LV++  DLF EM
Sbjct: 198 HGLCKVGETRAALDLLQRVD------GNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             KGI+ + +                                            CK  K+
Sbjct: 252 VSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM 311

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            E   + ++MM++G+ P   TY  L++GYCLV +VN A ++F++MA+ G  PD+ SYS++
Sbjct: 312 KEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIM 371

Query: 204 INGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEMKLCNV 240
           ING+CK    +EAMN+ +EM              +++G  K         + ++M    V
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P   T N  +D LCK   V + + L    +    +  +  ++ LI+G C+ G  E A +
Sbjct: 432 PPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARK 491

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           +F  L  K    DV AY I+I     EG   +   LL  ME+NGC  D  T+  +++S  
Sbjct: 492 VFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLF 551

Query: 361 QKE 363
           +K+
Sbjct: 552 KKD 554



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 167/350 (47%), Gaps = 27/350 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   + +   P + VT+++LI GFC+ G ++DA  L  KM     +P+V T + L+
Sbjct: 244 AFDLFSEMVSKGISP-DVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILV 302

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
               + G M     +   M+       GI KPN   Y SL+DG C  + V++ K +F  M
Sbjct: 303 NAFCKDGKMKEGKTVFDMMMKQ-----GI-KPNFVTYNSLMDGYCLVKEVNKAKSIFNTM 356

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G+N +           CK  K  EA  L + M ++ + P + TY+ L++G    G++
Sbjct: 357 AQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRI 416

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + A+ L D M  +G  P++ +Y+ +++  CK   V++A+ +  +    GF+         
Sbjct: 417 SYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQ--------- 467

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P+  T +I I GLC++G + +  ++F  L +    L V  +  +I+G C  G+F  A
Sbjct: 468 ---PDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEA 524

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             L +K+     + D   Y I+I +L K+ +      LL  M   G  L+
Sbjct: 525 LALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 111/220 (50%), Gaps = 14/220 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +++ +I GFC      +A  L K+M      P+V T  +LI GL ++G ++  L+L    
Sbjct: 367 SYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQL---- 422

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           V+ M D G    PN+  Y S++D LCK   VD+   L  + KDKG   +          L
Sbjct: 423 VDQMHDRG--VPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGL 480

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+  KL +A ++ E ++ +G N  ++ YT ++ G+C+ G  N A+AL   M   G +PD 
Sbjct: 481 CQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDA 540

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
            +Y ++I    K    + A  + REMI  G    F ++ L
Sbjct: 541 KTYEIIILSLFKKDENDMAEKLLREMIARGLPLNFYDLYL 580



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 174/410 (42%), Gaps = 72/410 (17%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           +FI      +N ++++S    F    ++ DA  L  ++      P     + ++  L ++
Sbjct: 39  NFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKS 98

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
            + +  L L Q+M     +F GI KPN+     LI+  C+  L+     +F ++   G  
Sbjct: 99  KHYHTVLYLSQKM-----EFRGI-KPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYV 152

Query: 133 ANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK------- 177
            +T+        LC K ++ +A    + ++  G +    +Y  L++G C VG+       
Sbjct: 153 PDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDL 212

Query: 178 ----------------------------VNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
                                       VN A  LF  M  KG  PDV +YS LI+G+C 
Sbjct: 213 LQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCI 272

Query: 210 NFNVEEAMNVSREMIL--------------NGF---------KKIFNEMKLCNVVPETFT 246
              +++A+++  +MIL              N F         K +F+ M    + P   T
Sbjct: 273 LGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVT 332

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  +DG C    V +   +F T+        ++ ++ +I G CK   F+ A  LF ++ 
Sbjct: 333 YNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMH 392

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            KN++ DVV Y+ LI  L K G+I     L+  M + G   ++ T+N+++
Sbjct: 393 RKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSIL 442



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 12/181 (6%)

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           V+ A++LF+ + R+   P  F ++ ++    K+ +    + +S++M   G K        
Sbjct: 66  VDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIK-------- 117

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
               P    CNI I+  C+ G +     +F  +           F +L +G C  G  + 
Sbjct: 118 ----PNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQ 173

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A    +K+       D ++Y  LIH L K G+ +    LL  ++ N    +V  +NT++ 
Sbjct: 174 AFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIID 233

Query: 358 S 358
           S
Sbjct: 234 S 234



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + K+  A   F   + + Y  L+   +  +I+GFC+EG   +A  L+ KM   GC P+  
Sbjct: 483 SGKLEDARKVFEDLLVKGYN-LDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAK 541

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMV 86
           T + +I  L +    ++  KL +EM+
Sbjct: 542 TYEIIILSLFKKDENDMAEKLLREMI 567


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 207/426 (48%), Gaps = 73/426 (17%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +++  A+   G  +   Y+P +  TFN+LI G        +A  LV +M   GC+P++ T
Sbjct: 165 NRISDAVSLVGQMVEMGYQP-DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVT 223

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
              ++ GL + G+++L L L ++M  G        +P V  Y ++ID LC  + V+   +
Sbjct: 224 YGIVVNGLCKRGDIDLALSLLKKMEQGK------IEPGVVIYNTIIDALCNYKNVNDALN 277

Query: 122 LFMEMKDKGINANTL--------LC----------------------------------- 138
           LF EM +KGI  N +        LC                                   
Sbjct: 278 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 337

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K+ KLVEA +L + M++R ++P IFTY+ L+NG+C+  +++ A  +F+ M  K   P+V 
Sbjct: 338 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 397

Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEM 235
           +Y+ LI G+CK   V+E M + REM              +++GF         + +F +M
Sbjct: 398 TYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQM 457

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               V+P+  T +I +DGLC NG V   + +F  L+ S  E  +  +N +I G CK G  
Sbjct: 458 VSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKV 517

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           E   +LF  LS K +  +VV Y  ++    ++G  ++ + L   M+E G   D  T+NTL
Sbjct: 518 EDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTL 577

Query: 356 MISFLQ 361
           + + L+
Sbjct: 578 IRAHLR 583



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 165/344 (47%), Gaps = 27/344 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F     +  RP N VT+NSLI+  C  G   DAS+L+  M      PNV T   LI
Sbjct: 275 ALNLFTEMDNKGIRP-NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 333

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
               + G +    KL+ EM+    D      P++F Y SLI+G C    +D+ K +F  M
Sbjct: 334 DAFVKEGKLVEAEKLYDEMIKRSID------PDIFTYSSLINGFCMHDRLDEAKHMFELM 387

Query: 127 KDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             K      +  NTL+   CK  ++ E   L   M QRGL     TYT L++G+    + 
Sbjct: 388 ISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQAREC 447

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + A  +F  M   G +PD+ +YS+L++G C N  VE A+ V            F  ++  
Sbjct: 448 DNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVV------------FEYLQRS 495

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            + P+ +T NI I+G+CK G V +  +LF +L +   +  V  + +++ G C+ G+ E A
Sbjct: 496 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 555

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
             LF ++  +  + D   YN LI A  ++G       L+  M  
Sbjct: 556 DALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 135/283 (47%), Gaps = 24/283 (8%)

Query: 92  FGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCK 139
           FG + K    P++  +  L+  + K    D    L  +M++ GI+ N           C+
Sbjct: 69  FGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCR 128

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           +++L  A  +L  MM+ G  P I T   LLNG+C   +++ A++L   M   G+ PD F+
Sbjct: 129 RSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFT 188

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           ++ LI+G  ++    EA+ +   M++ G +            P+  T  I ++GLCK G 
Sbjct: 189 FNTLIHGLFRHNRASEAVALVDRMVVKGCQ------------PDLVTYGIVVNGLCKRGD 236

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +   + L   +E    E  V I+N++I   C +     A  LF ++  K +  +VV YN 
Sbjct: 237 IDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           LI  L   G+    + LL  M E     +V TF+ L+ +F+++
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 339



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 23/238 (9%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           KL +A  L   M++    P I  ++ LL+    + K ++ I+L + M   G   ++++YS
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 202 VLINGYCKNFNVEEAMNVSREM--------------ILNGF---KKIFNEMKLCNVV--- 241
           +LIN +C+   +  A+ V  +M              +LNGF    +I + + L   +   
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 242 ---PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P++FT N  I GL ++    E + L   + +  C+  +  +  ++ G CK G  ++A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             L  K+    +   VV YN +I AL     +     L   M+  G   +V T+N+L+
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 14/191 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI GF       +A  + K+M + G  P++ T   L+ GL   G +   L + 
Sbjct: 430 NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVF 489

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + +           +P+++ Y  +I+G+CK   V+   DLF  +  KG+  N +      
Sbjct: 490 EYLQRSK------MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 543

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+K    EA+ L   M + G  P   TY  L+  +   G    +  L   M    F+
Sbjct: 544 SGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFV 603

Query: 195 PDVFSYSVLIN 205
            D  +  ++ N
Sbjct: 604 GDASTIGLVTN 614


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 200/453 (44%), Gaps = 96/453 (21%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+L A    G   +  Y P + +TF++L+ GFC+EG + +A  LV +M     RP++ T 
Sbjct: 149 KLLFAFSVLGRAWKLGYEP-DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTV 207

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKP----------------------- 98
            TLI GL   G ++  L L   MV  G       Y P                       
Sbjct: 208 STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE 267

Query: 99  -----NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC------- 138
                +V  Y  +ID LCKD   D    LF EM+ KGI A+ +        LC       
Sbjct: 268 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDD 327

Query: 139 ----------------------------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
                                       K+ KL+EA  L   M+ RG+ P   TY  L++
Sbjct: 328 GAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 387

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI------ 224
           G+C    ++ A  +FD M  KG  PD+ +YS+LIN YCK   V++ M + RE+       
Sbjct: 388 GFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIP 447

Query: 225 -----------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
                            LN  K++F EM    V P   T  I +DGLC NG + + +E+F
Sbjct: 448 NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 507

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             ++ S   L + I+N +I G C     + A  LF  LS K +  DVV YN++I  L K+
Sbjct: 508 EKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 567

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           G + + + L   M+E+GC  D  T+N L+ + L
Sbjct: 568 GSLSEADMLFRKMKEDGCTPDDFTYNILIRAHL 600



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 140/297 (47%), Gaps = 31/297 (10%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTK---DLFMEMKDKG--INANTL---LCKKTKLVEAN 147
           Y+P+   + +L++G C +  V +     D  +EMK +   +  +TL   LC K ++ EA 
Sbjct: 165 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 224

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            L++ M++ G  P   TY P+LN  C  G   +A+ LF  M  +     V  YS++I+  
Sbjct: 225 VLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSL 284

Query: 208 CKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPET 244
           CK+ + ++A+++  EM + G K                       K+  EM   N++P+ 
Sbjct: 285 CKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV 344

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T +  ID   K G +LE  EL+  +           +NSLI G CK      A+++F+ 
Sbjct: 345 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 404

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +  K    D+V Y+ILI++  K  ++     L   +   G   +  T+NTL++ F Q
Sbjct: 405 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 461



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 23/245 (9%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+K KL+ A  +L    + G  P   T++ L+NG+CL G+V+ A+AL D M      PD+
Sbjct: 145 CRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDL 204

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNE 234
            + S LING C    V EA+ +   M+  GF+                        +F +
Sbjct: 205 VTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRK 264

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+  N+       +I ID LCK+G   + + LF  +E+   +  V  ++SLI G C  G 
Sbjct: 265 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 324

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           ++  +++  ++  +N++ DVV ++ LI    KEG++ +   L   M   G A D  T+N+
Sbjct: 325 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 384

Query: 355 LMISF 359
           L+  F
Sbjct: 385 LIDGF 389



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 119/238 (50%), Gaps = 26/238 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT++ LI  +C    + D  +L +++++ G  PN  T +TL+ G  ++G +N   +L QE
Sbjct: 415 VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE 474

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK----GINANTL---- 136
           MV+      G+  P+V  YG L+DGLC +  +++  ++F +M+      GI    +    
Sbjct: 475 MVSR-----GV-PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 528

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C  +K+ +A  L   +  +G+ P + TY  ++ G C  G ++ A  LF  M   G  PD
Sbjct: 529 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPD 588

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            F+Y++LI  +     +  ++            ++  EMK+C    ++ T  + ID L
Sbjct: 589 DFTYNILIRAHLGGSGLISSV------------ELIEEMKVCGFSADSSTIKMVIDML 634



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 14/191 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+N+L+ GFC  G +  A +L ++M + G  P+V T   L+ GL   G +N  L++ 
Sbjct: 448 NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 507

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M       G      +  Y  +I G+C    VD    LF  + DKG+  + +      
Sbjct: 508 EKMQKSRMTLG------IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 561

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCKK  L EA+ L   M + G  P  FTY  L+  +     +  ++ L + M   GF 
Sbjct: 562 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFS 621

Query: 195 PDVFSYSVLIN 205
            D  +  ++I+
Sbjct: 622 ADSSTIKMVID 632



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 12/200 (6%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+   ++T T ++N YC   K+  A ++     + G+ PD  ++S L+NG+C    V EA
Sbjct: 129 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 188

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           + +   M+         EMK     P+  T +  I+GLC  G V E + L   +     +
Sbjct: 189 VALVDRMV---------EMK---QRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQ 236

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
                +  ++   CK G   +A +LF K+  +N+ A VV Y+I+I +L K+G       L
Sbjct: 237 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 296

Query: 337 LLSMEENGCALDVDTFNTLM 356
              ME  G   DV T+++L+
Sbjct: 297 FNEMEMKGIKADVVTYSSLI 316


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 190/386 (49%), Gaps = 37/386 (9%)

Query: 9   MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           +     + + + PL+  T+  LI G C  G+   A   ++KM     +PNV    T++ G
Sbjct: 167 VGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDG 226

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L + G ++  L L  EM NG G      +PN+  Y  LI GLC      +   L  EM  
Sbjct: 227 LCKDGLVSEALNLCSEM-NGKG-----VRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMK 280

Query: 129 KGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
            G+  +  +        CK+ K+++A  ++  M+  G  P +FTY  L++ YCL  K+N 
Sbjct: 281 MGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNE 340

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------------ 228
           A+ +F  M  +G +PD+  ++ LI+G+CK+ N+ +AM++  EM   GF            
Sbjct: 341 AMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIG 400

Query: 229 -----------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                      K++F  M     VP   TC + +DGLCK   + E + L   +E SN +L
Sbjct: 401 GFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDL 460

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            + I++ L+ G C  G    A ELF+ L  K L  +V  Y I+I  L K+G + K   LL
Sbjct: 461 NIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLL 520

Query: 338 LSMEENGCALDVDTFNTLMISFLQKE 363
           ++MEENGC  +  T+N  +   L K+
Sbjct: 521 INMEENGCLPNNCTYNVFVQGLLTKK 546



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 20/235 (8%)

Query: 130 GINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           GI A+T+        LC+   +     +L  M + GL P + T T L+NG C+ G V  A
Sbjct: 107 GIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQA 166

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           + L D M +  +  DV++Y VLING CK  +   A+   R+M    +K            
Sbjct: 167 VGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWK------------ 214

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P     +  +DGLCK+G V E + L   +        +  +  LI+G C FG ++ A  L
Sbjct: 215 PNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSL 274

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +++    +  D+   NIL+ A  KEG++ +   ++  M   G   DV T+N+L+
Sbjct: 275 LDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLI 329



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 14/189 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            T+ +LI GFC  G    A +L   M  +G  PN+ TC  ++ GL +   ++  + L + 
Sbjct: 393 ATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKA 452

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     D       N+  Y  L+DG+C    ++   +LF  +  KG+  N          
Sbjct: 453 MEKSNLDL------NIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKG 506

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK+  L +A  LL  M + G  P   TY   + G     ++  +I     M  KGF  D
Sbjct: 507 LCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVD 566

Query: 197 VFSYSVLIN 205
             +   +IN
Sbjct: 567 AATTEFIIN 575



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 29/212 (13%)

Query: 173 CLVGK---VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------ 223
           C  GK   ++ A+ LF  MAR   +P V  +++L+    +  +   A+++ + M      
Sbjct: 49  CWSGKLKNIDEALDLFQGMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGI 108

Query: 224 ---------ILN----------GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
                    ++N          GF  +    KL  + P   T    I+GLC  G+V + +
Sbjct: 109 EADTITLNIVINCLCRLKLVAFGFSVLGTMFKL-GLEPTVMTLTTLINGLCVQGNVAQAV 167

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            L   +E     L V  +  LI G CK G    A     K+  +N   +VV Y+ ++  L
Sbjct: 168 GLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGL 227

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            K+G + +   L   M   G   ++ T+  L+
Sbjct: 228 CKDGLVSEALNLCSEMNGKGVRPNLVTYACLI 259


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 200/453 (44%), Gaps = 96/453 (21%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+L A    G   +  Y P + +TF++L+ GFC+EG + +A  LV +M     RP++ T 
Sbjct: 120 KLLFAFSVLGRAWKLGYEP-DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTV 178

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKP----------------------- 98
            TLI GL   G ++  L L   MV  G       Y P                       
Sbjct: 179 STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE 238

Query: 99  -----NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC------- 138
                +V  Y  +ID LCKD   D    LF EM+ KGI A+ +        LC       
Sbjct: 239 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDD 298

Query: 139 ----------------------------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
                                       K+ KL+EA  L   M+ RG+ P   TY  L++
Sbjct: 299 GAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 358

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI------ 224
           G+C    ++ A  +FD M  KG  PD+ +YS+LIN YCK   V++ M + RE+       
Sbjct: 359 GFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIP 418

Query: 225 -----------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
                            LN  K++F EM    V P   T  I +DGLC NG + + +E+F
Sbjct: 419 NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 478

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             ++ S   L + I+N +I G C     + A  LF  LS K +  DVV YN++I  L K+
Sbjct: 479 EKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 538

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           G + + + L   M+E+GC  D  T+N L+ + L
Sbjct: 539 GSLSEADMLFRKMKEDGCTPDDFTYNILIRAHL 571



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 140/297 (47%), Gaps = 31/297 (10%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTK---DLFMEMKDKG--INANTL---LCKKTKLVEAN 147
           Y+P+   + +L++G C +  V +     D  +EMK +   +  +TL   LC K ++ EA 
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 195

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            L++ M++ G  P   TY P+LN  C  G   +A+ LF  M  +     V  YS++I+  
Sbjct: 196 VLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSL 255

Query: 208 CKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPET 244
           CK+ + ++A+++  EM + G K                       K+  EM   N++P+ 
Sbjct: 256 CKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV 315

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T +  ID   K G +LE  EL+  +           +NSLI G CK      A+++F+ 
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +  K    D+V Y+ILI++  K  ++     L   +   G   +  T+NTL++ F Q
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 432



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 23/245 (9%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+K KL+ A  +L    + G  P   T++ L+NG+CL G+V+ A+AL D M      PD+
Sbjct: 116 CRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDL 175

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNE 234
            + S LING C    V EA+ +   M+  GF+                        +F +
Sbjct: 176 VTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRK 235

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+  N+       +I ID LCK+G   + + LF  +E+   +  V  ++SLI G C  G 
Sbjct: 236 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           ++  +++  ++  +N++ DVV ++ LI    KEG++ +   L   M   G A D  T+N+
Sbjct: 296 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 355

Query: 355 LMISF 359
           L+  F
Sbjct: 356 LIDGF 360



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 115/221 (52%), Gaps = 14/221 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT++ LI  +C    + D  +L +++++ G  PN  T +TL+ G  ++G +N   +L QE
Sbjct: 386 VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE 445

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK----GINANTL---- 136
           MV+      G+  P+V  YG L+DGLC +  +++  ++F +M+      GI    +    
Sbjct: 446 MVSR-----GV-PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 499

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C  +K+ +A  L   +  +G+ P + TY  ++ G C  G ++ A  LF  M   G  PD
Sbjct: 500 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPD 559

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
            F+Y++LI  +     +  ++ +  EM + GF    + +K+
Sbjct: 560 DFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKM 600



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 14/191 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+N+L+ GFC  G +  A +L ++M + G  P+V T   L+ GL   G +N  L++ 
Sbjct: 419 NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 478

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M       G      +  Y  +I G+C    VD    LF  + DKG+  + +      
Sbjct: 479 EKMQKSRMTLG------IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 532

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCKK  L EA+ L   M + G  P  FTY  L+  +     +  ++ L + M   GF 
Sbjct: 533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFS 592

Query: 195 PDVFSYSVLIN 205
            D  +  ++I+
Sbjct: 593 ADSSTIKMVID 603



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 12/200 (6%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+   ++T T ++N YC   K+  A ++     + G+ PD  ++S L+NG+C    V EA
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 159

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           + +   M+         EMK     P+  T +  I+GLC  G V E + L   +     +
Sbjct: 160 VALVDRMV---------EMK---QRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQ 207

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
                +  ++   CK G   +A +LF K+  +N+ A VV Y+I+I +L K+G       L
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267

Query: 337 LLSMEENGCALDVDTFNTLM 356
              ME  G   DV T+++L+
Sbjct: 268 FNEMEMKGIKADVVTYSSLI 287


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/419 (30%), Positives = 208/419 (49%), Gaps = 73/419 (17%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
               ++R Y P + VT N+LIKG C++G ++ A     K+   G + N  +  TLI G+ 
Sbjct: 117 LAKILKRGYPP-DTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVC 175

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G+    +K  +++       G + KP+V  Y ++ID +CK +LV +   LF EM  KG
Sbjct: 176 KIGDTRAAIKFLRKID------GRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKG 229

Query: 131 INA-----NTL--------------------------------------LCKKTKLVEAN 147
           I+A     NTL                                      LCK+ K+ EA 
Sbjct: 230 ISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAK 289

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L +M++  + P + TY+ L++GY LV +V  A  +F++M+  G  PDV +Y++LING+
Sbjct: 290 SVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349

Query: 208 CKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEMKLCNVVPET 244
           CKN  V+EA+N+ +EM              +++G  K         + +EM+      + 
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADV 409

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T +  IDGLCKNGH+   + LF  ++       +  F  L+ G CK G  + A E+F  
Sbjct: 410 ITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQD 469

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           L  K    +V  YN++I+   K+G +++   +L  ME+NGC  +  TF T++I+  +K+
Sbjct: 470 LLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKD 528



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 166/345 (48%), Gaps = 28/345 (8%)

Query: 10  AFGSFIRRCYRPLND--VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A+G F     + ++   VT+N+LI GFC+ G +++A  L+ +M      PNV T + L+ 
Sbjct: 218 AYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVD 277

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
            L + G +     +   M+          KP+V  Y +L+DG      V + + +F  M 
Sbjct: 278 ALCKEGKVKEAKSVLAVMLKA------CVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMS 331

Query: 128 DKGINAN----TLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
             G+  +    T+L    CK   + EA  L + M Q+ + P I TY+ L++G C  G+++
Sbjct: 332 LMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIS 391

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
               L D M  +G   DV +YS LI+G CKN +++ A+             +FN+MK   
Sbjct: 392 YVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAI------------ALFNKMKDQE 439

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           + P  FT  I +DGLCK G + +  E+F  L      L V  +N +I G CK G+ E A 
Sbjct: 440 IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEAL 499

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            + +K+     + +   +  +I AL K+ +  K   LL  M   G
Sbjct: 500 TMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 147/297 (49%), Gaps = 26/297 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+   C EG +++A  ++  M     +P+V T  TL+ G      +   +K  
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYF----LVYEVKKA 323

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           Q + N M   G    P+V  Y  LI+G CK+++VD+  +LF EM  K +    +      
Sbjct: 324 QHVFNAMSLMG--VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++     L++ M  RG    + TY+ L++G C  G ++ AIALF+ M  +   
Sbjct: 382 DGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIR 441

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P++F++++L++G CK   +++A  V ++++  G+          NV    +T N+ I+G 
Sbjct: 442 PNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYH--------LNV----YTYNVMINGH 489

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           CK G + E + +   +E + C      F ++I    K    + A +L  ++  + L+
Sbjct: 490 CKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 122/269 (45%), Gaps = 20/269 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           + P +  +  ++D   K +       L   ++ KGI  + +         C   ++    
Sbjct: 55  HTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L  +++RG  P   T   L+ G CL G+V  A+   D +  +GF  +  SY+ LING 
Sbjct: 115 SVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGV 174

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK  +   A+   R++          + +L    P+    N  ID +CK   V E   LF
Sbjct: 175 CKIGDTRAAIKFLRKI----------DGRLTK--PDVVMYNTIIDAMCKYQLVSEAYGLF 222

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             + +      V  +N+LI G C  G  + A  L N++  K +  +V  YNIL+ AL KE
Sbjct: 223 SEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKE 282

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
           G++K+   +L  M +     DV T++TLM
Sbjct: 283 GKVKEAKSVLAVMLKACVKPDVITYSTLM 311



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 14/201 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P I  +  +L+ +  +   + A++L   +  KG  PD+ + ++LIN +C    +    +V
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             +++  G+             P+T T N  I GLC  G V + +     L     +L  
Sbjct: 117 LAKILKRGYP------------PDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQ 164

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + +LI G CK G    A +   K+  +    DVV YN +I A+ K  Q+  E Y L S
Sbjct: 165 VSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKY-QLVSEAYGLFS 223

Query: 340 -MEENGCALDVDTFNTLMISF 359
            M   G + DV T+NTL+  F
Sbjct: 224 EMAVKGISADVVTYNTLIYGF 244



 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 47/125 (37%)

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           FN M      P     N  +D   K  H    + L   LE+   +  +   N LI   C 
Sbjct: 47  FNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCH 106

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G       +  K+  +    D V  N LI  L  +GQ+KK  +    +   G  L+  +
Sbjct: 107 MGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVS 166

Query: 352 FNTLM 356
           + TL+
Sbjct: 167 YATLI 171


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 207/427 (48%), Gaps = 73/427 (17%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + ++  A+      +   Y+P + VTFN+LI G  +     +A  LV +M   GC+P++ 
Sbjct: 163 SKRISDAVALVDQMVEMGYKP-DTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV 221

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   ++ GL + G+++L L L ++M  G        + +V  Y ++IDGLCK + +D   
Sbjct: 222 TYGAVVNGLCKRGDIDLALSLLKKMEKGK------IEADVVIYNTIIDGLCKYKHIDDAF 275

Query: 121 DLFMEMKDKGI---------------------NANTLLC--------------------- 138
            LF +M+ KGI                     +A+ LL                      
Sbjct: 276 ALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAF 335

Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K+ KLVEA +L + M++R ++P IFTY+ L+NG+C+  +++ A  +F+ M  K   P+V
Sbjct: 336 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 395

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNE 234
            +Y+ LI G+CK   VEE M + REM   G                        +KIF +
Sbjct: 396 VTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 455

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    V P+  T +I +DGLCK G + + + +F  L+ S  E  +  +N +I G CK G 
Sbjct: 456 MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E   +LF  LS K +  +V+ Y  +I    ++G  ++ + L   M+E+G   D   +NT
Sbjct: 516 VEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNT 575

Query: 355 LMISFLQ 361
           L+ + L+
Sbjct: 576 LIRARLR 582



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 155/331 (46%), Gaps = 28/331 (8%)

Query: 44  SQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK----PN 99
           +QL K    F  R    +  +     + + N  L LKL     + +G FG + +    P+
Sbjct: 24  AQLRKASPLFSLRGVYFSAASYDYREKLSRNALLNLKLD----DAIGLFGEMVQSRPLPS 79

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           +  +  L+  + K +  D    L   M++  I+ +           C++++L  A  +L 
Sbjct: 80  IVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLG 139

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            MM+ G  P I T + LLNGYC   +++ A+AL D M   G+ PD  +++ LI+G   + 
Sbjct: 140 KMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHN 199

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
              EA+ +  +M+  G +            P+  T    ++GLCK G +   + L   +E
Sbjct: 200 KASEAVALVDQMVQRGCQ------------PDLVTYGAVVNGLCKRGDIDLALSLLKKME 247

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
               E  V I+N++I G CK+   + A  LFNK+  K +  DV  YN LI  L   G+  
Sbjct: 248 KGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWS 307

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             + LL +M E     +V TF+ L+ +F+++
Sbjct: 308 DASRLLSNMIERKINPNVVTFSALIDAFVKE 338



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 152/326 (46%), Gaps = 26/326 (7%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
           DA  L  +M      P++   + L++ + +    +L + L + M N    +      +++
Sbjct: 63  DAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISY------DLY 116

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELM 153
            Y  LI+  C+   +     +  +M   G     +  ++LL   C   ++ +A  L++ M
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 176

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           ++ G  P   T+  L++G  L  K + A+AL D M ++G  PD+ +Y  ++NG CK  ++
Sbjct: 177 VEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDI 236

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           + A++            +  +M+   +  +    N  IDGLCK  H+ +   LF  +E  
Sbjct: 237 DLALS------------LLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETK 284

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
                V  +NSLI   C +G +  AS L + +  + +  +VV ++ LI A  KEG++ + 
Sbjct: 285 GIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEA 344

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
             L   M +     D+ T+++L+  F
Sbjct: 345 EKLYDEMIKRSIDPDIFTYSSLINGF 370



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 37/220 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LIKGFC    + +  +L ++M+  G   N  T +TLI GL + G+ ++  K+ 
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453

Query: 83  QEMV---------------NGMGDFGGIYK--------------PNVFCYGSLIDGLCKD 113
           ++MV               +G+  +G + K              P+++ Y  +I+G+CK 
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA 513

Query: 114 RLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTY 165
             V+   DLF  +  KG+  N ++        C+K    EA+ L   M + G  P    Y
Sbjct: 514 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCY 573

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
             L+      G    +  L   M   GF+ D  + S++IN
Sbjct: 574 NTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/409 (30%), Positives = 201/409 (49%), Gaps = 73/409 (17%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N VTFN+LI G  +     +A  L+ +M   GC+P++ T  T++ GL + G+++L 
Sbjct: 181 YQP-NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           L L ++M  G        + +V  Y ++ID LC  + V+   +LF EM +KGI  N +  
Sbjct: 240 LSLLKKMEKGK------IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 293

Query: 137 ------LC-----------------------------------KKTKLVEANRLLELMMQ 155
                 LC                                   K+ KLVEA +L + M++
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 353

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R ++P IFTY+ L+NG+C+  +++ A  +F+ M  K   P+V +Y+ LI G+CK   VEE
Sbjct: 354 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEE 413

Query: 216 AMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFID 252
            M + REM   G                        +KIF +M    V P+  T +I +D
Sbjct: 414 GMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLD 473

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK G + + + +F  L+ S  E  +  +N +I G CK G  E   +LF  LS K +  
Sbjct: 474 GLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 533

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +V+ Y  +I    ++G  ++ + L   M+E+G   +  T+NTL+ + L+
Sbjct: 534 NVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 582



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 170/393 (43%), Gaps = 44/393 (11%)

Query: 3   KVLGALMAFGSFIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           K+  A+  FG  ++   RPL   V FN L+              L ++M       ++ +
Sbjct: 60  KLDDAVDLFGEMVQS--RPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 117

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR------- 114
            + LI    R   + L L +  +M+  +G     Y+P++    SL++G C  +       
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMK-LG-----YEPDIVTLSSLLNGYCHGKRISEAVA 171

Query: 115 LVDQTKDLFMEMKDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
           LVDQ     ME +   +  NTL   L    K  EA  L++ M+ RG  P +FTY  ++NG
Sbjct: 172 LVDQM--FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNG 229

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-- 229
            C  G +++A++L   M +     DV  Y+ +I+  C   NV +A+N+  EM   G +  
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 289

Query: 230 ---------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
                                ++ ++M    + P   T +  ID   K G ++E  +L+ 
Sbjct: 290 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +   + +  +  ++SLI G C     + A  +F  +  K+   +VV YN LI    K  
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           ++++   L   M + G   +  T+NTL+    Q
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 12/225 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C++++L  A  +L  MM+ G  P I T + LLNGYC   +++ A+AL D M    + P+ 
Sbjct: 126 CRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNT 185

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +++ LI+G   +    EA+ +   M+  G +            P+ FT    ++GLCK 
Sbjct: 186 VTFNTLIHGLFLHNKASEAVALIDRMVARGCQ------------PDLFTYGTVVNGLCKR 233

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G +   + L   +E    E  V I+ ++I   C +     A  LF ++  K +  +VV Y
Sbjct: 234 GDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 293

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N LI  L   G+    + LL  M E     +V TF+ L+ +F+++
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 338



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 37/220 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LIKGFC    + +  +L ++M+  G   N  T +TLI GL + G+ ++  K+ 
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453

Query: 83  QEMV---------------NGMGDFGGIYK--------------PNVFCYGSLIDGLCKD 113
           ++MV               +G+  +G + K              P+++ Y  +I+G+CK 
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA 513

Query: 114 RLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTY 165
             V+   DLF  +  KG+  N ++        C+K    EA+ L   M + G  P   TY
Sbjct: 514 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTY 573

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
             L+      G    +  L   M   GF+ D  + S++IN
Sbjct: 574 NTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/409 (30%), Positives = 201/409 (49%), Gaps = 73/409 (17%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N VTFN+LI G  +     +A  L+ +M   GC+P++ T  T++ GL + G+++L 
Sbjct: 165 YQP-NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 223

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           L L ++M  G        + +V  Y ++ID LC  + V+   +LF EM +KGI  N +  
Sbjct: 224 LSLLKKMEKGK------IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 277

Query: 137 ------LC-----------------------------------KKTKLVEANRLLELMMQ 155
                 LC                                   K+ KLVEA +L + M++
Sbjct: 278 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 337

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R ++P IFTY+ L+NG+C+  +++ A  +F+ M  K   P+V +Y+ LI G+CK   VEE
Sbjct: 338 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEE 397

Query: 216 AMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFID 252
            M + REM   G                        +KIF +M    V P+  T +I +D
Sbjct: 398 GMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLD 457

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK G + + + +F  L+ S  E  +  +N +I G CK G  E   +LF  LS K +  
Sbjct: 458 GLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 517

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +V+ Y  +I    ++G  ++ + L   M+E+G   +  T+NTL+ + L+
Sbjct: 518 NVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 566



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 170/393 (43%), Gaps = 44/393 (11%)

Query: 3   KVLGALMAFGSFIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           K+  A+  FG  ++   RPL   V FN L+              L ++M       ++ +
Sbjct: 44  KLDDAVDLFGEMVQS--RPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 101

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR------- 114
            + LI    R   + L L +  +M+  +G     Y+P++    SL++G C  +       
Sbjct: 102 YNILINCFCRRSQLPLALAVLGKMMK-LG-----YEPDIVTLSSLLNGYCHGKRISEAVA 155

Query: 115 LVDQTKDLFMEMKDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
           LVDQ     ME +   +  NTL   L    K  EA  L++ M+ RG  P +FTY  ++NG
Sbjct: 156 LVDQM--FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNG 213

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-- 229
            C  G +++A++L   M +     DV  Y+ +I+  C   NV +A+N+  EM   G +  
Sbjct: 214 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 273

Query: 230 ---------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
                                ++ ++M    + P   T +  ID   K G ++E  +L+ 
Sbjct: 274 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 333

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +   + +  +  ++SLI G C     + A  +F  +  K+   +VV YN LI    K  
Sbjct: 334 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 393

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           ++++   L   M + G   +  T+NTL+    Q
Sbjct: 394 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 426



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 12/225 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C++++L  A  +L  MM+ G  P I T + LLNGYC   +++ A+AL D M    + P+ 
Sbjct: 110 CRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNT 169

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +++ LI+G   +    EA+ +   M+  G +            P+ FT    ++GLCK 
Sbjct: 170 VTFNTLIHGLFLHNKASEAVALIDRMVARGCQ------------PDLFTYGTVVNGLCKR 217

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G +   + L   +E    E  V I+ ++I   C +     A  LF ++  K +  +VV Y
Sbjct: 218 GDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 277

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N LI  L   G+    + LL  M E     +V TF+ L+ +F+++
Sbjct: 278 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 322



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 37/220 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LIKGFC    + +  +L ++M+  G   N  T +TLI GL + G+ ++  K+ 
Sbjct: 378 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 437

Query: 83  QEMV---------------NGMGDFGGIYK--------------PNVFCYGSLIDGLCKD 113
           ++MV               +G+  +G + K              P+++ Y  +I+G+CK 
Sbjct: 438 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA 497

Query: 114 RLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTY 165
             V+   DLF  +  KG+  N ++        C+K    EA+ L   M + G  P   TY
Sbjct: 498 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTY 557

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
             L+      G    +  L   M   GF+ D  + S++IN
Sbjct: 558 NTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 597


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 188/374 (50%), Gaps = 37/374 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL+  T+  LI G C  G+   A + ++KM     +PNV    T++ GL + G ++  L 
Sbjct: 179 PLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALN 238

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG--INANTL-- 136
           L  EM +G G      +PN+  Y  LI GLC      +T  L  EM   G  ++  TL  
Sbjct: 239 LCSEM-SGKG-----VRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNI 292

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                CK+ K+++A  ++  M+  G  P +FTY  L++ YCL  K+N A+ +F  M  +G
Sbjct: 293 LVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRG 352

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------K 229
            +PD+  ++ LI+G+CK+ N+ + M++  EM   GF                       K
Sbjct: 353 CLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAK 412

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
           ++F  M     VP   TC + +DGLCK   + E + L   +E SN +L + I++ L+ G 
Sbjct: 413 ELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGM 472

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C  G    A ELF+ L  K L  +V  Y I+I  L K+G + K   LL++MEENGC  D 
Sbjct: 473 CSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDN 532

Query: 350 DTFNTLMISFLQKE 363
            T+N  +   L K+
Sbjct: 533 CTYNVFVQGLLTKK 546



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 20/235 (8%)

Query: 130 GINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           GI A+T+        LC+   +     +L  M + GL P + T T L+NG C+ G V  A
Sbjct: 107 GIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQA 166

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           + L D M +  +  DV++Y VLING CK  +   A+   R+M    +K            
Sbjct: 167 VGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWK------------ 214

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P     +  +DGLCK+G V E + L   +        +  +  LI+G C FG ++    L
Sbjct: 215 PNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSL 274

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +++    +  D+   NIL+ A  KEG++ +   ++  M   G   DV T+N+L+
Sbjct: 275 LDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLI 329



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 14/189 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +LI GFC  G    A +L   M  +G  PN+ TC  ++ GL +   ++  + L + 
Sbjct: 393 VTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEA 452

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     D       N+  Y  L+DG+C    ++   +LF  +  KG+  N          
Sbjct: 453 MEKSNLDL------NIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKG 506

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK+  L +A  LL  M + G  P   TY   + G     ++  +I     M  KGF  D
Sbjct: 507 LCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVD 566

Query: 197 VFSYSVLIN 205
             +  + IN
Sbjct: 567 AATTEITIN 575


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 178/356 (50%), Gaps = 72/356 (20%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++ TFN+LI+G C+EG I +A  L  K    G +P+V T  TL+ GL + GN +  ++L 
Sbjct: 181 DNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLL 240

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + MV          +PNV  Y ++ID LCKDR V +  +LF EM  KGI+ +        
Sbjct: 241 RSMVQKN------CRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLI 294

Query: 137 -------------------------------------LCKKTKLVEANRLLELMMQRGLN 159
                                                LCK+  +  A+ ++++M++RG+ 
Sbjct: 295 HALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVE 354

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + TYT L++G+CL  +++ A+ +FD+M  KG +P+V SY++LINGYC+   +++AM +
Sbjct: 355 PDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGL 414

Query: 220 SREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +M L G                          +F+EM     +P+  T  I +D LCK
Sbjct: 415 LEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCK 474

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           N H+ E M L   +E SN +  + ++N  I G C+ G  E A +LF+ LSC+   A
Sbjct: 475 NHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQGFAA 530



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 154/383 (40%), Gaps = 72/383 (18%)

Query: 40  IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99
           + DA     +M      P+      L+T + +  + +  L L  +M     D  GI  P+
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQM-----DSFGI-PPD 146

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL---LCKKTKLVEANRLLE 151
           V+    LI+  C  R +     +  ++   G        NTL   LC + K+ EA  L +
Sbjct: 147 VYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFD 206

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
             +  G  P + TY  L+NG C VG  + AI L  SM +K   P+V +Y+ +I+  CK+ 
Sbjct: 207 KTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDR 266

Query: 212 NVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTCN 248
            V EA N+  EMI  G                          + NEM    ++P     +
Sbjct: 267 QVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFS 326

Query: 249 IFIDGLCK------------------------------NGHVL-----EVMELFPTLEIS 273
             +D LCK                              +GH L     E +++F T+   
Sbjct: 327 TVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHK 386

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            C   V  +N LI G C+    + A  L  ++S + L+AD V YN LIH L   G+++  
Sbjct: 387 GCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHA 446

Query: 334 NYLLLSMEENGCALDVDTFNTLM 356
             L   M  +G   D+ T+  L+
Sbjct: 447 IALFHEMVASGQIPDLVTYRILL 469



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 12/179 (6%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A++ F+ M      P    ++ L+    K  +    +++S +M   G            +
Sbjct: 96  ALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFG------------I 143

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+ +T NI I+  C    +     +   L    C+     FN+LIRG C  G    A  
Sbjct: 144 PPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALH 203

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           LF+K   +    DVV Y  L++ L K G       LL SM +  C  +V  +NT++ S 
Sbjct: 204 LFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSL 262


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/419 (30%), Positives = 206/419 (49%), Gaps = 73/419 (17%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
               ++R Y P + VT N+LIKG C++G ++ A     K+   G + N  +  TLI G+ 
Sbjct: 365 LAKILKRGYPP-STVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVC 423

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G+    +KL +++       G + KPNV  Y ++ID LCK +LV +   LF EM  KG
Sbjct: 424 KIGDTRGAIKLLRKI------DGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKG 477

Query: 131 INANTL-------------------------------------------LCKKTKLVEAN 147
           I+A+ +                                           L K+ K+ EA 
Sbjct: 478 ISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAK 537

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L +M++  + P +FTY  L+NGY LV +V  A  +F++M+  G  PDV +Y++LING+
Sbjct: 538 SVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF 597

Query: 208 CKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEMKLCNVVPET 244
           CK+  V+EA+N+ +EM              +++G  K         + +EM+      + 
Sbjct: 598 CKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADV 657

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T N  IDGLCKNGH+ + + LF  ++          F  L+ G CK G  + A E+F  
Sbjct: 658 ITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQD 717

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           L  K    DV  YN++I+   K+G +++   +L  MEENGC  +  TF+ ++ +  +K+
Sbjct: 718 LLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKD 776



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 202/454 (44%), Gaps = 109/454 (24%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           +L      ++R Y P + VT N+LIKG C++G +++A     K+   G + N  +  TLI
Sbjct: 47  SLSVLTKILKRGYPP-DTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLI 105

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G+ R G+    +K  +++       G + KPNV  Y ++ID LCK +LV +   LF EM
Sbjct: 106 NGVCRIGDTRAAIKFLRKI------DGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEM 159

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             KGI+AN +                                           LCK+ K+
Sbjct: 160 TVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKV 219

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA  +L +M++  +   + TY+ L++GY LV +V  A  +F++M+  G  PDV SY+++
Sbjct: 220 KEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIM 279

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKI---------FNEMK-------------LCNVV 241
           ING+CK   V++A+N+ +EMIL+ F  I         F +MK             L  + 
Sbjct: 280 INGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQ 339

Query: 242 PETFTCNIFID-----------------------------------GLCKNGHVLEVMEL 266
           P+ FT NI I+                                   GLC  G V + +  
Sbjct: 340 PDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHF 399

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              L     +L    + +LI G CK G    A +L  K+  +    +V  Y+ +I AL K
Sbjct: 400 HDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCK 459

Query: 327 EGQIKKENYLLLS-MEENGCALDVDTFNTLMISF 359
             Q+  E Y L S M   G + DV T++TL+  F
Sbjct: 460 Y-QLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 492



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 172/345 (49%), Gaps = 28/345 (8%)

Query: 10  AFGSFIRRCYRPLND--VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A+G F     + ++   VT+++LI GFC+ G +++A  L+ +M      P+V T   L+ 
Sbjct: 466 AYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVD 525

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
            L + G +     +   M+          KP+VF Y +L++G      V + + +F  M 
Sbjct: 526 ALGKEGKVKEAKSVLAVMLKA------CVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMS 579

Query: 128 DKGINAN----TLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
             G+  +    T+L    CK   + EA  L + M Q+ + P   TY+ L++G C  G+++
Sbjct: 580 LMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRIS 639

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
               L D M  +G   DV +Y+ LI+G CKN ++++A+             +FN+MK   
Sbjct: 640 YVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAI------------ALFNKMKDQG 687

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           + P TFT  I +DGLCK G + +  E+F  L      L V I+N +I G CK G+ E A 
Sbjct: 688 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEAL 747

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            + +K+     + + V ++I+I+AL K+ +  K   LL  M   G
Sbjct: 748 TMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 14/147 (9%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           +P + +T+NSLI G C  G++  A  L  KM   G RPN  T   L+ GL + G     L
Sbjct: 653 QPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGR----L 708

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           K  QE+   +   G  Y  +V+ Y  +I G CK  L+++   +  +M++ G   N +   
Sbjct: 709 KDAQEVFQDLLTKG--YHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFD 766

Query: 137 -----LCKKTKLVEANRLLELMMQRGL 158
                L KK +  +A +LL  M+ RGL
Sbjct: 767 IIINALFKKDENDKAEKLLRQMIARGL 793


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 192/405 (47%), Gaps = 74/405 (18%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN+LI G C EG I++A +L  +M   G  PNV + +T+I GL +TGN ++ + + ++M
Sbjct: 160 TFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKM 219

Query: 86  -VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
             NG        KP+V  Y ++ID LCKDRLV+   +   EM D+GI  N          
Sbjct: 220 EQNGC-------KPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHG 272

Query: 137 -----------------------------------LCKKTKLVEANRLLELMMQRGLNPV 161
                                              LCK+  + EA  + E M ++G+ P 
Sbjct: 273 FCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPN 332

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           I TY  L++GYCL   +N A  +F+ M R+G  P V SY++LING+CK+  ++EA ++  
Sbjct: 333 ISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLA 392

Query: 222 EMILNGFKK-----------------------IFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           EM                              IF EM    ++P   T +I +DG CK+G
Sbjct: 393 EMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHG 452

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           H+ E ++L  +++    E  +     LI G    G  E+A ELF+KL    +   +  Y 
Sbjct: 453 HLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYT 512

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           ++I  L KEG   +   L   ME++G   +  ++N ++  FLQ +
Sbjct: 513 VMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQ 557



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 130/275 (47%), Gaps = 21/275 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           +P+V  +G  +    K +       L  +M   G+  N          LC+   +  A  
Sbjct: 85  RPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVS 144

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L  M + G++P   T+  L+NG C  GK+  A+ LF+ M R+G  P+V SY+ +ING C
Sbjct: 145 ILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLC 204

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K  N   A++V ++M  NG K            P+  T N  ID LCK+  V + ME   
Sbjct: 205 KTGNTSMAVDVFKKMEQNGCK------------PDVVTYNTIIDSLCKDRLVNDAMEFLS 252

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +        V  +N ++ G C  G    A+ LF ++  ++++ D V   IL+  L KEG
Sbjct: 253 EMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEG 312

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF-LQK 362
            + +   +  +M E G   ++ T+N LM  + LQ+
Sbjct: 313 MVSEARLVFETMTEKGVEPNISTYNALMDGYCLQR 347



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 14/207 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N LI GFC    + +A  L+ +M      P+  T  TL+ GL + G     L + +EM
Sbjct: 370 SYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEM 429

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLLCK-- 139
            +    +G +  PN+  Y  L+DG CK   +D+   L   M++K +  N    T+L +  
Sbjct: 430 CS----YGLL--PNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGM 483

Query: 140 --KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
               KL  A  L   +   G+ P I TYT ++ G    G  + A  LF  M   GF+P+ 
Sbjct: 484 FIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNS 543

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMI 224
            SY+V+I G+ +N +   A+ +  EM+
Sbjct: 544 CSYNVMIQGFLQNQDSSTAIRLIDEMV 570



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 12/207 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M++    P +  +   L  +    + +  ++L + M   G   +V+S +VLIN  C+  +
Sbjct: 79  MVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNH 138

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           V+ A+++  +M   G            + P   T N  I+GLC  G + E +ELF  +  
Sbjct: 139 VDFAVSILGKMFKLG------------IHPTASTFNALINGLCNEGKIKEAVELFNEMVR 186

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              E  V  +N++I G CK G   +A ++F K+       DVV YN +I +L K+  +  
Sbjct: 187 RGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVND 246

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
               L  M + G   +V T+N ++  F
Sbjct: 247 AMEFLSEMLDRGIPPNVFTYNCMVHGF 273


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 205/419 (48%), Gaps = 73/419 (17%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
               ++R Y+P + +TF +LIKG C++G +  A     K+   G + +  +  TLI G+ 
Sbjct: 117 LAKILKRGYQP-HTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVC 175

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G+    +KL +++       G + KPNV  Y ++ID LCK +LV +   LF EM  KG
Sbjct: 176 KIGDTRGAIKLVRKID------GRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKG 229

Query: 131 INANTL-------------------------------------------LCKKTKLVEAN 147
           I+A+ +                                           LCK+ K+ EA 
Sbjct: 230 ISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAK 289

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L +M++  + P + TY+ L++GY LV ++  A  +F++M+  G  PDV SY++LING+
Sbjct: 290 NVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGF 349

Query: 208 CKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEMKLCNVVPET 244
           CKN  V+EA+N+ +EM              +++G  K         + +EM+   +    
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANV 409

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T N  IDGLCKNGH+   + LF  ++          F  L+ G CK G  + A E F  
Sbjct: 410 ITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQD 469

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           L  K    DV  YN++I+   K+G +++   +L  MEENGC  +  TF+ ++ +  +K+
Sbjct: 470 LLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKD 528



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 160/340 (47%), Gaps = 46/340 (13%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            SK+  A+      + +   P N  T+N L+   C EG +++A  ++  M     +P+V 
Sbjct: 247 ASKLKEAIGLLNEMVLKTINP-NVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVI 305

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T  TL+ G      +   LK  Q + N M   G    P+V  Y  LI+G CK+++VD+  
Sbjct: 306 TYSTLMDGYF----LVYELKKAQHVFNAMSLMG--VTPDVHSYTILINGFCKNKMVDEAL 359

Query: 121 DLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +LF EM                            Q+ + P I TY+ L++G C  G+++ 
Sbjct: 360 NLFKEMH---------------------------QKNMVPGIVTYSSLIDGLCKSGRISY 392

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
              L D M  +G   +V +Y+ LI+G CKN +++ A+             +FN+MK   +
Sbjct: 393 VWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAI------------ALFNKMKDQGI 440

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P +FT  I +DGLCK G + +  E F  L      L V  +N +I G CK G+ E A  
Sbjct: 441 RPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALT 500

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
           + +K+     V + V ++I+I+AL K+ +  K   LL  M
Sbjct: 501 MLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQM 540



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 120/269 (44%), Gaps = 20/269 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           + P +  +  ++D   K +       L   ++ KGI  + +         C   ++    
Sbjct: 55  HTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGF 114

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L  +++RG  P   T+T L+ G CL G+VN A+   D +  +G   D  SY  LING 
Sbjct: 115 SVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGV 174

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK  +   A+ + R++          + +L    P     N  ID LCK   V E   LF
Sbjct: 175 CKIGDTRGAIKLVRKI----------DGRLTK--PNVEMYNTIIDALCKYQLVSEAYGLF 222

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +        V  + +LI G C     + A  L N++  K +  +V  YNIL+ AL KE
Sbjct: 223 SEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKE 282

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
           G++K+   +L  M +     DV T++TLM
Sbjct: 283 GKVKEAKNVLAVMLKACVKPDVITYSTLM 311



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 14/211 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++  LI GFC    + +A  L K+M      P + T  +LI GL ++G ++       ++
Sbjct: 341 SYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVW----DL 396

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           ++ M D G     NV  Y SLIDGLCK+  +D+   LF +MKD+GI   +         L
Sbjct: 397 IDEMRDRG--IPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGL 454

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  +L +A    + ++ +G +  ++ Y  ++NG+C  G +  A+ +   M   G +P+ 
Sbjct: 455 CKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNA 514

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
            ++ ++IN   K    ++A  + R+MI  G 
Sbjct: 515 VTFDIIINALFKKDENDKAEKLLRQMICRGL 545



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 14/201 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P I  +  +L+ +  +   + A++L   +  KG  PD+ + ++LIN +C    +    +V
Sbjct: 57  PPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             +++  G++            P T T    I GLC  G V + +     L     +   
Sbjct: 117 LAKILKRGYQ------------PHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQ 164

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + +LI G CK G    A +L  K+  +    +V  YN +I AL K  Q+  E Y L S
Sbjct: 165 VSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKY-QLVSEAYGLFS 223

Query: 340 -MEENGCALDVDTFNTLMISF 359
            M   G + DV T+ TL+  F
Sbjct: 224 EMTAKGISADVVTYTTLIYGF 244



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 14/146 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N +T+NSLI G C  G++  A  L  KM   G RP   T   L+ GL + G     LK
Sbjct: 406 PANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGR----LK 461

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
             QE    +   G  Y  +V+ Y  +I+G CK  L+++   +  +M++ G   N +    
Sbjct: 462 DAQEAFQDLLTKG--YHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDI 519

Query: 137 ----LCKKTKLVEANRLLELMMQRGL 158
               L KK +  +A +LL  M+ RGL
Sbjct: 520 IINALFKKDENDKAEKLLRQMICRGL 545


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 192/391 (49%), Gaps = 37/391 (9%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +KV  A++ F   +R      N+V + +++ G    G+      L++ M     +P+V T
Sbjct: 146 NKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRT 205

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
              +I  L +  N++  + L  EM            PN+F Y SLIDGLCK    ++ K 
Sbjct: 206 YSIVIDALCKDINLDAAINLLNEMKQKN------IPPNIFTYNSLIDGLCKLGQWEKVKT 259

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  EM +  IN N          LCK+ K+ +A+ ++  M+++G+ P I TY+ +++GYC
Sbjct: 260 LLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYC 319

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN--------------V 219
           L G+V+ A  +F+ +  KG  P++FSYS+LINGYCK  N+ +AM               V
Sbjct: 320 LRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTV 379

Query: 220 SREMILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
           +   IL+G          KKIF+EM      P+    +  + G  K G V E M LF  L
Sbjct: 380 TYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKL 439

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           E +  +  +  +  +I G CK      A  +F KL    L+ DV  YN++I    +EG  
Sbjct: 440 ERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLF 499

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            +   +L  ME+NGC  +  T+N +M  F +
Sbjct: 500 DEVKGILRKMEDNGCPANNITYNVIMQGFFR 530



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 12/213 (5%)

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
           +L+ ++   P    Y  ++NG    G     ++L   M +    PDV +YS++I+  CK+
Sbjct: 157 KLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKD 216

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
            N++ A+N            + NEMK  N+ P  FT N  IDGLCK G   +V  L   +
Sbjct: 217 INLDAAIN------------LLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEM 264

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
              N    V  F+ LI G CK G  E A E+   +  K +  D++ Y+ ++      GQ+
Sbjct: 265 VNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQV 324

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +   +   + + G   ++ +++ L+  + +K+
Sbjct: 325 DRARRVFNVLRDKGIKPNIFSYSILINGYCKKK 357



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 21/228 (9%)

Query: 16  RRCYRPLND-------VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           RR +  L D        +++ LI G+C + N+  A QL  +++  G +P+  T  T++ G
Sbjct: 328 RRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHG 387

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK- 127
           L   G +    K+  EM+  +G       P++  + +L+ G  K  LV++   LF +++ 
Sbjct: 388 LIEVGRIGDAKKIFDEMLR-VGP-----TPDICLHSTLLFGYFKYGLVEEAMLLFSKLER 441

Query: 128 ---DKGINANTL----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
              D  I+  T+    LCK  ++ EA+ + E +   GL P + TY  ++ G+C  G  + 
Sbjct: 442 NREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDE 501

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
              +   M   G   +  +Y+V++ G+ ++  + E ++  +EM   GF
Sbjct: 502 VKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGF 549



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 105/273 (38%), Gaps = 59/273 (21%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L +A  L   M++    P +  ++ L      +   +  ++LF  M   G        ++
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 203 LINGYCKNFNVEEAMNV---------------------------------------SREM 223
           + N YC    ++ A +V                                        RE 
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 224 I-----------LNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I           +NG  K         +   M+  N  P+  T +I ID LCK+ ++   
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAA 222

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           + L   ++  N    +  +NSLI G CK G +E    L +++   N+  +V  ++ILI  
Sbjct: 223 INLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDG 282

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L KEG+++  + ++  M E G   D+ T++ +M
Sbjct: 283 LCKEGKVEDADEVMRHMIEKGVEPDIITYSAIM 315


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/406 (30%), Positives = 189/406 (46%), Gaps = 74/406 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN+LI G C EG I++A +L  +M   G  PNV +  T+I GL +TGN ++ + + ++
Sbjct: 164 ITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKK 223

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           M  NG        KPNV  Y ++ID LCKDRLV+   +   EM ++GI  N         
Sbjct: 224 MEQNGC-------KPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVH 276

Query: 137 ------------------------------------LCKKTKLVEANRLLELMMQRGLNP 160
                                               LCK+  + EA  + E M ++G+ P
Sbjct: 277 GFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEP 336

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            I TY  L++GYCL   +N A  +F+ M RKG  P   SY++LINGYCK+  ++EA ++ 
Sbjct: 337 DISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLL 396

Query: 221 REMILNGFKK-----------------------IFNEMKLCNVVPETFTCNIFIDGLCKN 257
            EM                              +F EM      P   T  I +DG CK+
Sbjct: 397 AEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKH 456

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           GH+ E ++L  +++    E  +  +  LI G    G  E+A ELF+KL       D+  Y
Sbjct: 457 GHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTY 516

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            ++I  L KEG   +   L   ME++G   +  ++N ++  FLQ +
Sbjct: 517 TVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQ 562



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 130/275 (47%), Gaps = 21/275 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           +P+V  +G  +    K +       L  +M    +  N          LC+   +  +  
Sbjct: 90  RPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVS 149

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L  M + G++P   T+  L+NG C  GK+  A+ LF+ M ++G  P+V SY+ +ING C
Sbjct: 150 VLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLC 209

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K  N   A++V ++M  NG K            P   T +  ID LCK+  V + ME   
Sbjct: 210 KTGNTSMAVDVFKKMEQNGCK------------PNVVTYSTIIDSLCKDRLVNDAMEFLS 257

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +        V  +NS++ G C  G    A+ LF ++  ++++ + V + IL+  L KEG
Sbjct: 258 EMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEG 317

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF-LQK 362
            + +   +  +M E G   D+ T+N LM  + LQ+
Sbjct: 318 MVSEARLVFETMTEKGVEPDISTYNALMDGYCLQR 352



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 14/207 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N LI G+C    + +A  L+ +M      P+  T  TL+ GL + G     L L +EM
Sbjct: 375 SYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEM 434

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLLCK-- 139
            +    +G    PN+  Y  L+DG CK   +D+   L   MK+K +  N    T+L +  
Sbjct: 435 CS----YGP--HPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGM 488

Query: 140 --KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
               KL  A  L   +   G  P I TYT ++ G    G  + A  LF  M   GF+P+ 
Sbjct: 489 FIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNS 548

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMI 224
            SY+V+I G+ +N +   A+ +  EM+
Sbjct: 549 CSYNVMIQGFLQNQDSSTAIRLIDEMV 575



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 12/207 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M++    P +  +   L  +    + +  ++L + M       +V+S ++LIN  C+  +
Sbjct: 84  MVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNH 143

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           V+ +++V  +M   G            + P+  T N  I+GLC  G + E +ELF  +  
Sbjct: 144 VDFSVSVLGKMFKLG------------IHPDAITFNALINGLCNEGKIKEAVELFNEMVK 191

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              E  V  + ++I G CK G   +A ++F K+       +VV Y+ +I +L K+  +  
Sbjct: 192 RGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVND 251

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
               L  M E G   +V T+N+++  F
Sbjct: 252 AMEFLSEMVERGIPPNVFTYNSIVHGF 278


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/368 (33%), Positives = 183/368 (49%), Gaps = 37/368 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+  ++ G C  G+   A  L+ KM      P V   +T+I GL +  +M+  L L +E
Sbjct: 17  VTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 76

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     +  GI +PNV  Y SLI  LC          L  +M ++ IN +          
Sbjct: 77  M-----ETKGI-RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDA 130

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K+ KLVEA +L + M++R ++P I TY+ L+NG+C+  +++ A  +F+ M  K   PD
Sbjct: 131 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 190

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFN 233
           V +Y+ LI G+CK   VEE M V REM   G                        ++IF 
Sbjct: 191 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 250

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM    V P   T N  +DGLCKNG + + M +F  L+ S  E  +  +N +I G CK G
Sbjct: 251 EMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAG 310

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E   +LF  LS K +  DVVAYN +I    ++G  ++ + L   M+E+G   +   +N
Sbjct: 311 KVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYN 370

Query: 354 TLMISFLQ 361
           TL+ + L+
Sbjct: 371 TLIRARLR 378



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 163/353 (46%), Gaps = 27/353 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F     +  RP N VT++SLI   C  G   DAS+L+  M      P+V T   LI
Sbjct: 70  ALNLFKEMETKGIRP-NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 128

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
               + G +    KL+ EMV    D      P++  Y SLI+G C    +D+ K +F  M
Sbjct: 129 DAFVKEGKLVEAEKLYDEMVKRSID------PSIVTYSSLINGFCMHDRLDEAKQMFEFM 182

Query: 127 KDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             K      +  NTL+   CK  ++ E   +   M QRGL     TY  L+ G    G  
Sbjct: 183 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDC 242

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           ++A  +F  M   G  P++ +Y+ L++G CKN  +E+AM V            F  ++  
Sbjct: 243 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVV------------FEYLQRS 290

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            + P  +T NI I+G+CK G V +  +LF  L +   +  V  +N++I G C+ G  E A
Sbjct: 291 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 350

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
             LF ++     + +   YN LI A  ++G  +    L+  M   G A D  T
Sbjct: 351 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 403



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 110/236 (46%), Gaps = 23/236 (9%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L++ M+ +G  P + TY  ++NG C  G  ++A  L + M +    P V  Y+ +I+G C
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 209 KNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETF 245
           K  ++++A+N+ +EM   G +                       ++ ++M    + P+ F
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T +  ID   K G ++E  +L+  +   + +  +  ++SLI G C     + A ++F  +
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 182

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             K+   DVV YN LI    K  ++++   +   M + G   +  T+N L+    Q
Sbjct: 183 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 238



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 12/178 (6%)

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           +AL D M  KG  PD+ +Y V++NG CK  + + A N            + N+M+   + 
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFN------------LLNKMEQGKLE 48

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P     N  IDGLCK  H+ + + LF  +E       V  ++SLI   C +G +  AS L
Sbjct: 49  PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 108

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + +  + +  DV  ++ LI A  KEG++ +   L   M +      + T+++L+  F
Sbjct: 109 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGF 166



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 61/121 (50%)

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+  T  + ++GLCK G       L   +E    E  V I+N++I G CK+   + A  L
Sbjct: 14  PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL 73

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           F ++  K +  +VV Y+ LI  L   G+    + LL  M E     DV TF+ L+ +F++
Sbjct: 74  FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 133

Query: 362 K 362
           +
Sbjct: 134 E 134


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 184/364 (50%), Gaps = 40/364 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL--HQ 83
           T+NSL+  FC E  +++A +L K MA  G  P+V T  T+I+GL +TG +   L++  H+
Sbjct: 80  TYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHK 139

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL- 137
            +  G          N   Y +LI+GLCKD  +++   L  EM  KG     I  NT+L 
Sbjct: 140 MIERGCS-------ANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILS 192

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             C+  K+ EA +  + M  RG +P +  Y  LL+     GK + A+ LF  +  KG+MP
Sbjct: 193 GLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMP 252

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKKIF 232
           D  +Y+ ++ G  +  N++EA  + ++M+ +G                         K+ 
Sbjct: 253 DTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVL 312

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            EM     VP+  T NI +DGLCK   V +  ELF T+  + C   +  ++ ++ G CK 
Sbjct: 313 EEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKT 372

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
                A  LF+++  + LV DVV +NIL+  L K G++ +   LL  M  +GCA D   +
Sbjct: 373 NKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAY 432

Query: 353 NTLM 356
           NTLM
Sbjct: 433 NTLM 436



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 185/374 (49%), Gaps = 54/374 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TF  ++K FC +G +RD  +L ++M   G  P+    + LI G  + G ++   +L+
Sbjct: 7   NRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLY 66

Query: 83  QEMVN-------------------------------GMGDFGGIYKPNVFCYGSLIDGLC 111
           +EMV+                                M + G  ++P+V  Y ++I GLC
Sbjct: 67  EEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKG--FEPDVVTYSTIISGLC 124

Query: 112 KD-RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVI 162
           K  ++ +  + LF +M ++G +ANT+        LCK   +  A +LLE M  +G  P  
Sbjct: 125 KTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDN 184

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            TY  +L+G C +GKV+ A   FDSM  +G+ PDV +Y+ L++   K    +EAM + ++
Sbjct: 185 ITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKD 244

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
           +I  G+            +P+T T N  + GL +  ++ E  E+F  +  S C      +
Sbjct: 245 VIAKGY------------MPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATY 292

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           + ++ G C+    + A ++  ++S    V DVV YNIL+  L K   + K + L  +M +
Sbjct: 293 SIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD 352

Query: 343 NGCALDVDTFNTLM 356
           NGCA D+ +++ ++
Sbjct: 353 NGCAPDIVSYSVVL 366



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 134/273 (49%), Gaps = 19/273 (6%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           PN + +  ++   CK   +     LF +M D GI+ + +          KK ++ EANRL
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            E M+  GL P I+TY  LLN +C   K+  A+ LF +MA KGF PDV +YS +I+G CK
Sbjct: 66  YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCK 125

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              V EA+ +           +F++M        T   N  I+GLCK+ ++    +L   
Sbjct: 126 TGKVTEALEM-----------LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEE 174

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +           +N+++ G C+ G    A + F+ +  +    DVVAYN L+ AL KEG+
Sbjct: 175 MASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGK 234

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             +   L   +   G   D  T+N++++   +K
Sbjct: 235 TDEAMKLFKDVIAKGYMPDTVTYNSILLGLARK 267



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 15/230 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F   I + Y P + VT+NS++ G   + N+ +A ++ KKM   GC PN  T   ++
Sbjct: 238 AMKLFKDVIAKGYMP-DTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVL 296

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +G  R   ++   K+ +EM       G +  P+V  Y  L+DGLCK  LVD+  +LF  M
Sbjct: 297 SGHCRAKKVDDAHKVLEEM----SKIGAV--PDVVTYNILLDGLCKTNLVDKAHELFSTM 350

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            D G   + +        LCK  K+ +A  L + M++R L P + T+  L++G C  GK+
Sbjct: 351 VDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKL 410

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           + A  L D M   G  PD  +Y+ L+NG  K     +A  +++ M   GF
Sbjct: 411 DEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGF 460



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 13/202 (6%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R  +P  +T+  +L  +C  GK+     LF+ M   G  PD   Y++LI+GY K   V+E
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDE 61

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A  +  EM+  G +            P  +T N  ++  CK   + E MELF T+     
Sbjct: 62  ANRLYEEMVSVGLE------------PSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGF 109

Query: 276 ELFVEIFNSLIRGCCKFG-IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           E  V  ++++I G CK G + E    LF+K+  +   A+ VAYN LI+ L K+  I++  
Sbjct: 110 EPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAY 169

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            LL  M   G   D  T+NT++
Sbjct: 170 KLLEEMASKGYVPDNITYNTIL 191


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 197/415 (47%), Gaps = 73/415 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++  A+      +   YRP + +TF +LI G  +     +A  LV +M   GC+PN+ T 
Sbjct: 170 RISDAVALVDQMVEMGYRP-DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 228

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             ++ GL + G+++L   L  +M           + NV  Y ++ID LCK R  D   +L
Sbjct: 229 GVVVNGLCKRGDIDLAFNLLNKME------AAKIEANVVIYSTVIDSLCKYRHEDDALNL 282

Query: 123 FMEMKDKGINANTL--------LC-----------------------------------K 139
           F EM++KG+  N +        LC                                   K
Sbjct: 283 FTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK 342

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           + KLVEA +L + M++R ++P IFTY+ L+NG+C+  +++ A  +F+ M  K   P+V +
Sbjct: 343 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 402

Query: 200 YSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMK 236
           Y+ LING+CK   ++E + + REM              +++GF         + +F +M 
Sbjct: 403 YNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 462

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              V P   T N  +DGLCKNG + + M +F  L+ S  E  +  +N +I G CK G  E
Sbjct: 463 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 522

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
              +LF  LS K +  DV+ YN +I    ++G  ++ + L   M E+G   D  T
Sbjct: 523 DGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 169/363 (46%), Gaps = 27/363 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  AL   G  ++  Y P + VT +SL+ G+C    I DA  LV +M   G RP+  T
Sbjct: 134 SQISLALALLGKMMKLGYEP-SIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 192

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             TLI GL      +  + L   MV          +PN+  YG +++GLCK   +D   +
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRGC------QPNLVTYGVVVNGLCKRGDIDLAFN 246

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  +M+   I AN +        LCK     +A  L   M  +G+ P + TY+ L++  C
Sbjct: 247 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 306

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
              + + A  L   M  +   P+V +++ LI+ + K   + EA            +K+++
Sbjct: 307 NYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEA------------EKLYD 354

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM   ++ P+ FT +  I+G C +  + E   +F  +   +C   V  +N+LI G CK  
Sbjct: 355 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAK 414

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             +   ELF ++S + LV + V Y  LIH   +         +   M  +G   ++ T+N
Sbjct: 415 RIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYN 474

Query: 354 TLM 356
           TL+
Sbjct: 475 TLL 477



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 169/391 (43%), Gaps = 40/391 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           K+  A+  FG  ++   RPL  +  FN L+              L +KM   G   N+ T
Sbjct: 65  KLDDAIGLFGGMVKS--RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYT 122

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            + LI    R   ++L L L  +M+  +G     Y+P++    SL++G C  + +     
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMK-LG-----YEPSIVTLSSLLNGYCHGKRISDAVA 176

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  +M + G   +T+        L    K  EA  L++ M+QRG  P + TY  ++NG C
Sbjct: 177 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 236

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---- 229
             G +++A  L + M       +V  YS +I+  CK  + ++A+N+  EM   G +    
Sbjct: 237 KRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVI 296

Query: 230 -------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                              ++ ++M    + P   T N  ID   K G ++E  +L+  +
Sbjct: 297 TYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM 356

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
              + +  +  ++SLI G C     + A  +F  +  K+   +VV YN LI+   K  +I
Sbjct: 357 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRI 416

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            +   L   M + G   +  T+ TL+  F Q
Sbjct: 417 DEGVELFREMSQRGLVGNTVTYTTLIHGFFQ 447



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 143/295 (48%), Gaps = 25/295 (8%)

Query: 81  LHQ-EMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           LH  ++ + +G FGG+ K    P++F +  L+  + K +  D    L  +M+  GI+ N 
Sbjct: 61  LHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNL 120

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                     C+++++  A  LL  MM+ G  P I T + LLNGYC   +++ A+AL D 
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M   G+ PD  +++ LI+G   +    EA+ +   M+  G +            P   T 
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ------------PNLVTY 228

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
            + ++GLCK G +     L   +E +  E  V I++++I   CK+   + A  LF ++  
Sbjct: 229 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 288

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           K +  +V+ Y+ LI  L    +    + LL  M E     +V TFN L+ +F+++
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKE 343


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 38/369 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL   G  ++  Y P + VT  SL+ GFC    + DA  LV KM   G +P++   + +I
Sbjct: 139 ALSILGKMLKLGYEP-DRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAII 197

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             L +T  +N      +E+     +  GI +PNV  Y +L++GLC          L  +M
Sbjct: 198 DSLCKTKRVNDAFDFFKEI-----ERKGI-RPNVVTYTALVNGLCNSSRWSDAARLLSDM 251

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             K I  N +          K  K++EA  L E M++  ++P I TY+ L+NG CL  ++
Sbjct: 252 IKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI 311

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
           + A  +FD M  KG + DV SY+ LING+CK   VE+ M + REM              +
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371

Query: 225 LNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           + GF         ++ F++M    + P+ +T NI + GLC NG + + + +F  ++    
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           +L +  + ++IRG CK G  E A  LF  LS K L  D+V Y  ++  L  +G + +   
Sbjct: 432 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 491

Query: 336 LLLSMEENG 344
           L   M++ G
Sbjct: 492 LYTKMKQEG 500



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 156/335 (46%), Gaps = 46/335 (13%)

Query: 23  NDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ND+ TFN +I  FC    +  A  ++ KM   G  P+  T  +L+ G  R   ++  + L
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
             +MV    + G  YKP++  Y ++ID LCK + V+   D F E++ KGI          
Sbjct: 178 VDKMV----EIG--YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIR--------- 222

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                             P + TYT L+NG C   + + A  L   M +K   P+V +YS
Sbjct: 223 ------------------PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 264

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            L++ + KN  V EA            K++F EM   ++ P+  T +  I+GLC +  + 
Sbjct: 265 ALLDAFVKNGKVLEA------------KELFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           E  ++F  +    C   V  +N+LI G CK    E   +LF ++S + LV++ V YN LI
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               + G + K       M+  G + D+ T+N L+
Sbjct: 373 QGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILL 407



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 15/236 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KVL A   F   +R    P + VT++SLI G C+   I +A+Q+   M + GC  +V + 
Sbjct: 275 KVLEAKELFEEMVRMSIDP-DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSY 333

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI G  +   +   +KL +EM        G+   N   Y +LI G  +   VD+ ++ 
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQR-----GLV-SNTVTYNTLIQGFFQAGDVDKAQEF 387

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F +M   GI+ +          LC   +L +A  + E M +R ++  I TYT ++ G C 
Sbjct: 388 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 447

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
            GKV  A +LF S++ KG  PD+ +Y+ +++G C    + E   +  +M   G  K
Sbjct: 448 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMK 503



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 29/170 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI+GF   G++  A +   +M  FG  P++ T + L+ GL   G +   L + 
Sbjct: 364 NTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIF 423

Query: 83  QEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLCKD 113
           ++M               + GM   G +               KP++  Y +++ GLC  
Sbjct: 424 EDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK 483

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIF 163
            L+ + + L+ +MK +G+  N        +  +  L++ M+  G  P + 
Sbjct: 484 GLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLL 533


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 38/369 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL   G  ++  Y P + VT  SL+ GFC    + DA  LV KM   G +P++   + +I
Sbjct: 139 ALSILGKMLKLGYEP-DRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAII 197

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             L +T  +N      +E+     +  GI +PNV  Y +L++GLC          L  +M
Sbjct: 198 DSLCKTKRVNDAFDFFKEI-----ERKGI-RPNVVTYTALVNGLCNSSRWSDAARLLSDM 251

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             K I  N +          K  K++EA  L E M++  ++P I TY+ L+NG CL  ++
Sbjct: 252 IKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRI 311

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
           + A  +FD M  KG + DV SY+ LING+CK   VE+ M + REM              +
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371

Query: 225 LNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           + GF         ++ F++M    + P+ +T NI + GLC NG + + + +F  ++    
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           +L +  + ++IRG CK G  E A  LF  LS K L  D+V Y  ++  L  +G + +   
Sbjct: 432 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 491

Query: 336 LLLSMEENG 344
           L   M++ G
Sbjct: 492 LYTKMKQEG 500



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 156/335 (46%), Gaps = 46/335 (13%)

Query: 23  NDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ND+ TFN +I  FC    +  A  ++ KM   G  P+  T  +L+ G  R   ++  + L
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
             +MV    + G  YKP++  Y ++ID LCK + V+   D F E++ KGI          
Sbjct: 178 VDKMV----EIG--YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIR--------- 222

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                             P + TYT L+NG C   + + A  L   M +K   P+V +YS
Sbjct: 223 ------------------PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 264

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            L++ + KN  V EA            K++F EM   ++ P+  T +  ++GLC +  + 
Sbjct: 265 ALLDAFVKNGKVLEA------------KELFEEMVRMSIDPDIVTYSSLVNGLCLHDRID 312

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           E  ++F  +    C   V  +N+LI G CK    E   +LF ++S + LV++ V YN LI
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               + G + K       M+  G + D+ T+N L+
Sbjct: 373 QGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILL 407



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 15/236 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KVL A   F   +R    P + VT++SL+ G C+   I +A+Q+   M + GC  +V + 
Sbjct: 275 KVLEAKELFEEMVRMSIDP-DIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSY 333

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI G  +   +   +KL +EM        G+   N   Y +LI G  +   VD+ ++ 
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQR-----GLV-SNTVTYNTLIQGFFQAGDVDKAQEF 387

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F +M   GI+ +          LC   +L +A  + E M +R ++  I TYT ++ G C 
Sbjct: 388 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 447

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
            GKV  A +LF S++ KG  PD+ +Y+ +++G C    + E   +  +M   G  K
Sbjct: 448 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMK 503



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 29/170 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI+GF   G++  A +   +M  FG  P++ T + L+ GL   G +   L + 
Sbjct: 364 NTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIF 423

Query: 83  QEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLCKD 113
           ++M               + GM   G +               KP++  Y +++ GLC  
Sbjct: 424 EDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK 483

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIF 163
            L+ + + L+ +MK +G+  N        +  +  L++ M+  G  P + 
Sbjct: 484 GLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLL 533


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 196/397 (49%), Gaps = 63/397 (15%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
             G  ++  Y+P N +  N+L+KG C++G ++ +     K+   G + +  +   L+ GL
Sbjct: 67  VLGKILKLGYQP-NTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGL 125

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
            + G     +KL + + +         +P+V  Y ++IDGLCKD+LVD+  DL+ EM  +
Sbjct: 126 CKIGETRCAIKLLRTIEDRST------RPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNAR 179

Query: 130 GI----------------------------------------NANTL---LCKKTKLVEA 146
           GI                                          NTL   LCK+ K+ E+
Sbjct: 180 GIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKES 239

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             LL +M ++G+ P +  Y+ L++GYCLVG+V  A  +F  M + G  PDV+SY+++ING
Sbjct: 240 KNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIING 299

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            CK   V+EAMN+ REM+              N++P+T T +  IDGLCK G +  +++L
Sbjct: 300 LCKGKRVDEAMNLLREMLHK------------NMIPDTVTYSSLIDGLCKLGRITTILDL 347

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +        +  +NSL+ G CK    + A  LF K+  + +  +   Y  LI  L K
Sbjct: 348 TKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCK 407

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            G++KK   L   +   G  +DV T+ T+MIS L KE
Sbjct: 408 GGRLKKGQALFQHLLVKGYCIDVWTY-TVMISGLCKE 443



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 149/319 (46%), Gaps = 31/319 (9%)

Query: 6   GALM-AFG---SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           G LM AFG     I +   P N  T+N+LI   C EG ++++  L+  M   G +P+V  
Sbjct: 199 GQLMEAFGLLNEMILKNINP-NIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVI 257

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
              L+ G    G +    ++   MV       G+  P+V+ Y  +I+GLCK + VD+  +
Sbjct: 258 YSILMDGYCLVGEVQKAKQIFLVMVQT-----GV-NPDVYSYNIIINGLCKGKRVDEAMN 311

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  EM  K +  +T+        LCK  ++     L + M  RG    + TY  LL+G C
Sbjct: 312 LLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLC 371

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
               ++ AIALF  M  +G  P+ ++Y+ LI+G CK   +++   + + +++ G+     
Sbjct: 372 KNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGY----- 426

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                    + +T  + I GLCK G   E + +   +E + C      F  +IR   +  
Sbjct: 427 -------CIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKD 479

Query: 294 IFEIASELFNKLSCKNLVA 312
             + A +L +++  K L+ 
Sbjct: 480 ENDKAEKLLHEMIAKGLLP 498



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 119/270 (44%), Gaps = 20/270 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P +  +G ++  L K +       L  +M+ KGI  + +         C   ++  +  +
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +++ G  P       L+ G CL G+V  ++   D +  +GF  D  SY +L+NG CK
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                 A+            K+   ++  +  P+    +  IDGLCK+  V E  +L+  
Sbjct: 128 IGETRCAI------------KLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSE 175

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +        V  + +LI G C  G    A  L N++  KN+  ++  YN LI  L KEG+
Sbjct: 176 MNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGK 235

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +K+   LL  M + G   DV  ++ LM  +
Sbjct: 236 VKESKNLLAVMTKKGVKPDVVIYSILMDGY 265


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 186/372 (50%), Gaps = 47/372 (12%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V+G +M FG      Y P + VT +SLI GFC    + DA  LV KM   G RP+V   +
Sbjct: 67  VVGKMMKFG------YEP-DVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 119

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           T+I G  + G +N  ++L   M     +  G+ + +   Y SL+ GLC          L 
Sbjct: 120 TIIDGSCKIGLVNDAVELFDRM-----ERDGV-RADAVTYNSLVAGLCCSGRWSDAARLM 173

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            +M  + I  N +          K+ K  EA +L E M +R ++P +FTY  L+NG C+ 
Sbjct: 174 RDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMH 233

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------------ 223
           G+V+ A  + D M  KG +PDV +Y+ LING+CK+  V+E   + REM            
Sbjct: 234 GRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITY 293

Query: 224 --ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
             I+ G+         ++IF+ M   +  P   T +I + GLC N  V + + LF  ++ 
Sbjct: 294 NTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQK 350

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           S  EL +  +N +I G CK G  E A +LF  LSCK L  DVV+Y  +I    ++ Q  K
Sbjct: 351 SEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDK 410

Query: 333 ENYLLLSMEENG 344
            + L   M+E+G
Sbjct: 411 SDLLYRKMQEDG 422



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 28/314 (8%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCK-DR 114
           P++     +++ + ++ N +L + L   M V G+G        +++ Y  +I+ LC+  R
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGH-------DLYSYNIVINCLCRCSR 60

Query: 115 LVDQTKDLFMEMK----DKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
            V     +   MK       +  ++L+   C+  ++ +A  L+  M + G  P +  Y  
Sbjct: 61  FVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNT 120

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +++G C +G VN A+ LFD M R G   D  +Y+ L+ G C +    +A  + R+M++  
Sbjct: 121 IIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR- 179

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                      ++VP   T    ID   K G   E M+L+  +     +  V  +NSLI 
Sbjct: 180 -----------DIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLIN 228

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C  G  + A ++ + +  K  + DVV YN LI+   K  ++ +   L   M + G   
Sbjct: 229 GLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVG 288

Query: 348 DVDTFNTLMISFLQ 361
           D  T+NT++  + Q
Sbjct: 289 DTITYNTIIQGYFQ 302



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 20/274 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  +  ++  + K +  D    LF  M+  GI  +          LC+ ++ V A  +
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           +  MM+ G  P + T + L+NG+C   +V  AI L   M   GF PDV  Y+ +I+G CK
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 127

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              V +A+            ++F+ M+   V  +  T N  + GLC +G   +   L   
Sbjct: 128 IGLVNDAV------------ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRD 175

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           + + +    V  F ++I    K G F  A +L+ +++ + +  DV  YN LI+ L   G+
Sbjct: 176 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGR 235

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + +   +L  M   GC  DV T+NTL+  F + +
Sbjct: 236 VDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSK 269



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 37/224 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           A+  +    RRC  P  DV T+NSLI G CM G + +A Q++  M T GC P+V T +TL
Sbjct: 204 AMKLYEEMTRRCVDP--DVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTL 261

Query: 66  ITGLRRTGNMNLTLKLHQEMVNG--MGD-------FGGIY-----------------KPN 99
           I G  ++  ++   KL +EM     +GD         G +                 +PN
Sbjct: 262 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPN 321

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           +  Y  L+ GLC +  V++   LF  M+   I  +          +CK   + +A  L  
Sbjct: 322 IRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFR 381

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            +  +GL P + +YT +++G+C   + + +  L+  M   G +P
Sbjct: 382 SLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 12/210 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+Q    P I  ++ +L+        ++ I+LF  M   G   D++SY+++IN  C+   
Sbjct: 1   MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 60

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
              A++V  +M+  G++            P+  T +  I+G C+   V + ++L   +E 
Sbjct: 61  FVIALSVVGKMMKFGYE------------PDVVTVSSLINGFCQGNRVFDAIDLVSKMEE 108

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 V I+N++I G CK G+   A ELF+++    + AD V YN L+  L   G+   
Sbjct: 109 MGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSD 168

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              L+  M       +V TF  ++  F+++
Sbjct: 169 AARLMRDMVMRDIVPNVITFTAVIDVFVKE 198


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 202/423 (47%), Gaps = 73/423 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           +    G  ++  Y+P N +T N+L+KG C++G ++ +     K+   G + +  +  TL+
Sbjct: 64  SFTVLGKILKLGYQP-NTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLL 122

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G     LKL + M+          +PNV  Y ++IDGLCKD+LV++  DL+ EM
Sbjct: 123 NGLCKIGETRSALKLLR-MIEDRST-----RPNVVMYNTIIDGLCKDKLVNEAYDLYSEM 176

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             +GI  N +                                           LCK+ K+
Sbjct: 177 DARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKV 236

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA  LL +M + G+ P + +Y  L++GYCL+G+V  A  +F +M +KG  P+V+SY+++
Sbjct: 237 KEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIM 296

Query: 204 INGYCKNFNVEEAMNVSREMI--------------LNGFKKI---------FNEMKLCNV 240
           I+  CK+  V+EAMN+ RE++              ++GF K+           EM     
Sbjct: 297 IDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQ 356

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
             +  T    +D LCKN ++ +   LF  ++    +     + +LI G CK G  + A +
Sbjct: 357 PADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQK 416

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF  L  K    +V  YN++I  L KEG + +   +   MEENGC  D  TF  ++ S  
Sbjct: 417 LFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLF 476

Query: 361 QKE 363
           +K+
Sbjct: 477 EKD 479



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 151/318 (47%), Gaps = 31/318 (9%)

Query: 6   GALM-AFG---SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           G LM AFG     I +   P N  T+  L+   C EG +++A  L+  M   G +PNV +
Sbjct: 199 GQLMEAFGLLNEMILKNINP-NVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVS 257

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TL+ G    G +    ++   MV       G+  PNV+ Y  +ID LCK + VD+  +
Sbjct: 258 YNTLMDGYCLIGEVQNAKQMFHTMVQK-----GV-NPNVYSYNIMIDRLCKSKRVDEAMN 311

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  E+  K +  NT+         CK  ++  A  LL+ M  RG    + TYT LL+  C
Sbjct: 312 LLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALC 371

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
               ++ A ALF  M  +G  P+ ++Y+ LI+G CK    + A  + + +++ G      
Sbjct: 372 KNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKG------ 425

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
               C +    +T N+ I GLCK G + E + +   +E + C      F  +IR   +  
Sbjct: 426 ----CRI--NVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKD 479

Query: 294 IFEIASELFNKLSCKNLV 311
             + A +L +++  K+L+
Sbjct: 480 QNDKAEKLLHEMIAKDLL 497



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 23/246 (9%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K      A  L + M  +G+ P +FT   L+N +C +G++  +  +   + + G+ P+
Sbjct: 20  LVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPN 79

Query: 197 VFSYSVLINGYCKNFNVEEAMN--------------VSREMILNGFKKI---FNEMKLCN 239
             + + L+ G C    V+++++              VS   +LNG  KI    + +KL  
Sbjct: 80  TITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLR 139

Query: 240 VV------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           ++      P     N  IDGLCK+  V E  +L+  ++       V  +++LI G C  G
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAG 199

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A  L N++  KN+  +V  Y IL+ AL KEG++K+   LL  M + G   +V ++N
Sbjct: 200 QLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYN 259

Query: 354 TLMISF 359
           TLM  +
Sbjct: 260 TLMDGY 265



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 12/200 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P I  +  ++     +     AI+LF  M  KG  PD+F+ ++LIN +C    +  +  V
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             +++  G++            P T T N  + GLC  G V + +     +     ++  
Sbjct: 68  LGKILKLGYQ------------PNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQ 115

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + +L+ G CK G    A +L   +  ++   +VV YN +I  L K+  + +   L   
Sbjct: 116 VSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSE 175

Query: 340 MEENGCALDVDTFNTLMISF 359
           M+  G   +V T++TL+  F
Sbjct: 176 MDARGIFPNVITYSTLIYGF 195



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 11/130 (8%)

Query: 5   LGALMAFGSFIRRCY---RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           LG + +    ++  Y   +P + VT+ SL+   C   N+  A+ L  KM   G +PN  T
Sbjct: 338 LGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYT 397

Query: 62  CDTLITGLRRTGNMNLTLKLHQE-MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
              LI GL + G      KL Q  +V G        + NV+ Y  +I GLCK+ ++D+  
Sbjct: 398 YTALIDGLCKGGRHKNAQKLFQHLLVKGC-------RINVWTYNVMISGLCKEGMLDEAL 450

Query: 121 DLFMEMKDKG 130
            +  +M++ G
Sbjct: 451 AMKSKMEENG 460


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/423 (29%), Positives = 198/423 (46%), Gaps = 73/423 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   ++  Y P + +TF +LIKG C++G I+ A     K+   G   +  +  TLI
Sbjct: 139 AFSVFAKILKMGYVP-DTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLI 197

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G     L L Q +       G + +PNV  Y ++ID +CK +LV++  DLF EM
Sbjct: 198 HGLCKVGETRAALDLLQRVD------GNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             KGI+ + +                                            CK  K+
Sbjct: 252 ISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM 311

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            E   + ++MM++G+ P   TY  L++GYCLV +VN A ++F++MA+ G  PD+ SYS++
Sbjct: 312 KEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIM 371

Query: 204 INGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEMKLCNV 240
           ING+CK    +EAMN+ +EM              +++G  K         + ++M    V
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P   T N  +D LCK   V + + L   L+    +  +  ++ LI+G C+ G  E A +
Sbjct: 432 PPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARK 491

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           +F  L  K    +V  Y I+I     EG   +   LL  ME+NGC  D  T+  +++S  
Sbjct: 492 VFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLF 551

Query: 361 QKE 363
           +K+
Sbjct: 552 KKD 554



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 32/268 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +++ +I GFC      +A  L K+M      P+V T  +LI GL ++G ++  L+L    
Sbjct: 367 SYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQL---- 422

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           V+ M D G    P +  Y S++D LCK   VD+   L  ++KDKGI  N          L
Sbjct: 423 VDQMHDRG--VPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGL 480

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+  KL +A ++ E ++ +G N  + TYT ++ G+C+ G  N A+AL   M   G +PD 
Sbjct: 481 CQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDA 540

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----IFNEMKLCNVV--PETFTCN-- 248
            +Y ++I    K    + A  + REMI  G +       F + K  +V   P+T T    
Sbjct: 541 KTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQIAIWFQKKKEYDVSSEPKTLTEQSV 600

Query: 249 ---------IFIDGLCKNGHVLEVMELF 267
                    +  DG+  NG V   + LF
Sbjct: 601 PKFKAMFGLVICDGMEWNGVVHNYIPLF 628



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 172/410 (41%), Gaps = 72/410 (17%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           +FI      +N ++++S    F    ++ DA  L  ++      P     + ++  L ++
Sbjct: 39  NFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKS 98

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
            + +  L L Q+M     +F GI KPN+     LI+  C+  L+     +F ++   G  
Sbjct: 99  KHYHTVLYLSQKM-----EFRGI-KPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYV 152

Query: 133 ANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK------- 177
            +T+        LC K ++ +A    + ++  G +    +Y  L++G C VG+       
Sbjct: 153 PDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDL 212

Query: 178 ----------------------------VNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
                                       VN A  LF  M  KG  PDV +YS LI+G+C 
Sbjct: 213 LQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCI 272

Query: 210 NFNVEEAMNVSREMIL--------------NGF---------KKIFNEMKLCNVVPETFT 246
              + +A+++  +MIL              N F         K +F+ M    + P   T
Sbjct: 273 LGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVT 332

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  +DG C    V +   +F T+        ++ ++ +I G CK   F+ A  LF ++ 
Sbjct: 333 YNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMH 392

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            KN++ DVV Y+ LI  L K G+I     L+  M + G    + T+N+++
Sbjct: 393 RKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSIL 442



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 12/181 (6%)

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           V+ A++LF+ + R+   P  F ++ ++    K+ +    + +S++M   G K        
Sbjct: 66  VDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIK-------- 117

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
               P    CNI I+  C+ G +     +F  +           F +LI+G C  G  + 
Sbjct: 118 ----PNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQ 173

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A    +K+       D ++Y  LIH L K G+ +    LL  ++ N    +V  +NT++ 
Sbjct: 174 AFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIID 233

Query: 358 S 358
           S
Sbjct: 234 S 234



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T+  +I+GFC+EG   +A  L+ KM   GC P+  T + +I  L +    ++  KL
Sbjct: 503 LNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKL 562

Query: 82  HQEMV 86
            +EM+
Sbjct: 563 LREMI 567


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 202/453 (44%), Gaps = 96/453 (21%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+L A    G  ++  + P N +TF++LI GFC+EG + +A  LV +M     RPNV T 
Sbjct: 119 KLLFAFSVVGRALKFGFEP-NTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTV 177

Query: 63  DTLITGLRRTGNMNLTLKLHQEMV---------------NGMGDFGGI------------ 95
           +TLI GL   G +   L L   MV               N M   G              
Sbjct: 178 NTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEE 237

Query: 96  --YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC------- 138
              K +V  Y  +ID LCKD  +D    LF EM+ KGI A+ +        LC       
Sbjct: 238 RSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDD 297

Query: 139 ----------------------------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
                                       K+ KL+EA  L   M+ RG+ P   TY+ L++
Sbjct: 298 GAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLID 357

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM------------- 217
           G+C   ++  A  + D M  KG  P++ +YS+LIN YCK   V+  M             
Sbjct: 358 GFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVA 417

Query: 218 -NVSREMILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
             V+   ++ GF         K++F EM    V P   T  I +DGLC NG + + +E+F
Sbjct: 418 DTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIF 477

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             ++ S   L + I+N +I G C     + A  LF  LS K +  DV+ YN++I  L K+
Sbjct: 478 EKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKK 537

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           G + + + L   M+E+GCA    T+N L+ + L
Sbjct: 538 GSLSEADMLFRKMKEDGCAPSDCTYNILIRAHL 570



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 174/387 (44%), Gaps = 62/387 (16%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           YRP N VT N+LI G C++G + +A  L+ +M  +GC  N  T   ++  + ++GN  L 
Sbjct: 170 YRP-NVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALA 228

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           L L ++M           K +V  Y  +ID LCKD  +D    LF EM+ KGI A+ +  
Sbjct: 229 LDLFRKMEERS------IKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAY 282

Query: 137 ------LC-----------------------------------KKTKLVEANRLLELMMQ 155
                 LC                                   K+ KL+EA  L   M+ 
Sbjct: 283 SSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVA 342

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           RG+ P   TY+ L++G+C   ++  A  + D M  KG  P++ +YS+LIN YCK   V+ 
Sbjct: 343 RGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDN 402

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
            M            ++F E+    +V +T T N  + G C++G +    ELF  +     
Sbjct: 403 GM------------RLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGV 450

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              V  +  L+ G C  G  + A E+F K+    ++  +  YNI+IH +    ++     
Sbjct: 451 PPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWS 510

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQK 362
           L  S+   G   DV T+N ++    +K
Sbjct: 511 LFCSLSVKGVKPDVLTYNVMIGGLCKK 537



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 31/296 (10%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  +  L   + + +  D       EM   GI  N           C+K KL+ A  +
Sbjct: 67  PSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSV 126

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           +   ++ G  P   T++ L+NG+CL G+V+ A+AL D M    + P+V + + LING C 
Sbjct: 127 VGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCL 186

Query: 210 NFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFT 246
              V EA+ +   M+  G +                        +F +M+  ++      
Sbjct: 187 KGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQ 246

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            +I ID LCK+G++ + + LF  +E+   +  V  ++S+I G C  G ++  +++  ++ 
Sbjct: 247 YSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMI 306

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +N++ +VV ++ LI    KEG++ +   L   M   G A D  T+++L+  F ++
Sbjct: 307 GRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKE 362



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 130/282 (46%), Gaps = 50/282 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT- 61
           K+L A   +   + R   P + +T++SLI GFC E  + +A+Q++  M + GC PN+ T 
Sbjct: 329 KLLEAKELYNEMVARGIAP-DTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTY 387

Query: 62  --------------------CD--------------TLITGLRRTGNMNLTLKLHQEMVN 87
                               C+              TL+ G  ++G +N+  +L QEMV+
Sbjct: 388 SILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVS 447

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK----GINANTL----LCK 139
                 G+  P+V  YG L+DGLC +  + +  ++F +M+      GI    +    +C 
Sbjct: 448 R-----GV-PPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCN 501

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
            +K+ +A  L   +  +G+ P + TY  ++ G C  G ++ A  LF  M   G  P   +
Sbjct: 502 ASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCT 561

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           Y++LI  +     V  ++ +  EM + GF    + +K+  V+
Sbjct: 562 YNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVVVM 603



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 23/238 (9%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           K+ EA  L E M+Q    P +  ++ L +      + ++ +     M   G   ++++ +
Sbjct: 49  KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMN 108

Query: 202 VLINGYCKN------FNVE--------EAMNVSREMILNGF---------KKIFNEMKLC 238
           ++IN +C+       F+V         E   ++   ++NGF           + + M   
Sbjct: 109 IMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEM 168

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P   T N  I+GLC  G V E + L   +    CE     +  ++   CK G   +A
Sbjct: 169 KYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALA 228

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +LF K+  +++ A VV Y+I+I +L K+G +     L   ME  G   DV  +++++
Sbjct: 229 LDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSII 286


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 186/372 (50%), Gaps = 47/372 (12%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V+G +M FG      Y P + VT +SLI GFC    + DA  LV KM   G RP+V   +
Sbjct: 126 VVGKMMKFG------YEP-DVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 178

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           T+I G  + G +N  ++L   M     +  G+ + +   Y SL+ GLC          L 
Sbjct: 179 TIIDGSCKIGLVNDAVELFDRM-----ERDGV-RADAVTYNSLVAGLCCSGRWSDAARLM 232

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            +M  + I  N +          K+ K  EA +L E M +R ++P +FTY  L+NG C+ 
Sbjct: 233 RDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMH 292

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------------ 223
           G+V+ A  + D M  KG +PDV +Y+ LING+CK+  V+E   + REM            
Sbjct: 293 GRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITY 352

Query: 224 --ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
             I+ G+         ++IF+ M   +  P   T +I + GLC N  V + + LF  ++ 
Sbjct: 353 NTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQK 409

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           S  EL +  +N +I G CK G  E A +LF  LSCK L  DVV+Y  +I    ++ Q  K
Sbjct: 410 SEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDK 469

Query: 333 ENYLLLSMEENG 344
            + L   M+E+G
Sbjct: 470 SDLLYRKMQEDG 481



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 151/332 (45%), Gaps = 28/332 (8%)

Query: 39  NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYK 97
           N+ +   L  KM      P++     +++ + ++ N +L + L   M V G+G       
Sbjct: 49  NLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGH------ 102

Query: 98  PNVFCYGSLIDGLCK-DRLVDQTKDLFMEMK----DKGINANTLL---CKKTKLVEANRL 149
            +++ Y  +I+ LC+  R V     +   MK       +  ++L+   C+  ++ +A  L
Sbjct: 103 -DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDL 161

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           +  M + G  P +  Y  +++G C +G VN A+ LFD M R G   D  +Y+ L+ G C 
Sbjct: 162 VSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCC 221

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           +    +A  + R+M++             ++VP   T    ID   K G   E M+L+  
Sbjct: 222 SGRWSDAARLMRDMVMR------------DIVPNVITFTAVIDVFVKEGKFSEAMKLYEE 269

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     +  V  +NSLI G C  G  + A ++ + +  K  + DVV YN LI+   K  +
Sbjct: 270 MTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKR 329

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           + +   L   M + G   D  T+NT++  + Q
Sbjct: 330 VDEGTKLFREMAQRGLVGDTITYNTIIQGYFQ 361



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 20/274 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  +  ++  + K +  D    LF  M+  GI  +          LC+ ++ V A  +
Sbjct: 67  PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           +  MM+ G  P + T + L+NG+C   +V  AI L   M   GF PDV  Y+ +I+G CK
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 186

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              V +A+            ++F+ M+   V  +  T N  + GLC +G   +   L   
Sbjct: 187 IGLVNDAV------------ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRD 234

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           + + +    V  F ++I    K G F  A +L+ +++ + +  DV  YN LI+ L   G+
Sbjct: 235 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGR 294

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + +   +L  M   GC  DV T+NTL+  F + +
Sbjct: 295 VDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSK 328



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 37/224 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           A+  +    RRC  P  DV T+NSLI G CM G + +A Q++  M T GC P+V T +TL
Sbjct: 263 AMKLYEEMTRRCVDP--DVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTL 320

Query: 66  ITGLRRTGNMNLTLKLHQEMVNG--MGD-------FGGIY-----------------KPN 99
           I G  ++  ++   KL +EM     +GD         G +                 +PN
Sbjct: 321 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPN 380

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           +  Y  L+ GLC +  V++   LF  M+   I  +          +CK   + +A  L  
Sbjct: 381 IRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFR 440

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            +  +GL P + +YT +++G+C   + + +  L+  M   G +P
Sbjct: 441 SLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 12/210 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+Q    P I  ++ +L+        ++ I+LF  M   G   D++SY+++IN  C+   
Sbjct: 60  MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 119

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
              A++V  +M+  G++            P+  T +  I+G C+   V + ++L   +E 
Sbjct: 120 FVIALSVVGKMMKFGYE------------PDVVTVSSLINGFCQGNRVFDAIDLVSKMEE 167

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 V I+N++I G CK G+   A ELF+++    + AD V YN L+  L   G+   
Sbjct: 168 MGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSD 227

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              L+  M       +V TF  ++  F+++
Sbjct: 228 AARLMRDMVMRDIVPNVITFTAVIDVFVKE 257


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 187/391 (47%), Gaps = 37/391 (9%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +KV  A+  F   +R      N+V + +++ G C +G+ + A  L++ M     +PN   
Sbjct: 156 NKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCI 215

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
              +I    + G ++    L  EM            P++F Y +LID LCK    +  + 
Sbjct: 216 YSIVIDAFCKDGMLDGATSLLNEMKQKS------IPPDIFTYSTLIDALCKLSQWENVRT 269

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF+EM    I  N          LCK+ K+ +A  ++  M+++G++P + TY  +++GY 
Sbjct: 270 LFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYG 329

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK--- 230
           L G+V+ A  +FDSM  K   P++ SY++LINGY +   ++EAM V RE+   G K    
Sbjct: 330 LRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIV 389

Query: 231 --------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                                F+EM     +P+ +T    + G  KNG V E M  F  L
Sbjct: 390 TCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKL 449

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           E    +  ++I+ ++I G CK G  + A   F KL    L  DV+ Y  +I    +EG +
Sbjct: 450 ERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLL 509

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            +   +L  ME+NGC  D  T+N ++  FL+
Sbjct: 510 DEAKDMLRKMEDNGCLADNRTYNVIVRGFLR 540



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 110/213 (51%), Gaps = 15/213 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F S I +   P N +++N LI G+  +  I +A Q+ ++++  G +P++ TC+ L+ GL 
Sbjct: 341 FDSMINKSIEP-NIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLF 399

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
             G          EM++     G I  P+++ + +L+ G  K+ LV++    F +++ + 
Sbjct: 400 ELGRTKSAQNFFDEMLSA----GHI--PDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR 453

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
            + N          LCK  KL +A+   E +   GL+P + TYT +++GYC  G ++ A 
Sbjct: 454 EDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAK 513

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
            +   M   G + D  +Y+V++ G+ ++  V E
Sbjct: 514 DMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSE 546



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 146/334 (43%), Gaps = 33/334 (9%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP-NV 100
           DA  L ++M      P+V +   L+  L       + +K +  +V+   +   +  P + 
Sbjct: 55  DAFSLFRQMVRTKPLPSVVSFSKLLKAL-------VHMKHYSSVVSLFREIHKLRIPVHE 107

Query: 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
           F    +++  C     D    +      KGI  N +        L  + K+ +A  L + 
Sbjct: 108 FILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKK 167

Query: 153 MMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
           +++  +  P    Y  ++NG C  G    A  L   M +    P+   YS++I+ +CK  
Sbjct: 168 LVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCK-- 225

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                     + +L+G   + NEMK  ++ P+ FT +  ID LCK      V  LF  LE
Sbjct: 226 ----------DGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLF--LE 273

Query: 272 ISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           + +  ++  +  FNS+I G CK G  E A E+   +  K +  DV+ YN++I   G  GQ
Sbjct: 274 MIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQ 333

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + +   +  SM       ++ ++N L+  + +++
Sbjct: 334 VDRAREIFDSMINKSIEPNIISYNILINGYARQK 367


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 202/449 (44%), Gaps = 96/449 (21%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A    G  ++  Y P + V FN+L+ G C+E  + +A +LV +M   G +P + T +TL+
Sbjct: 142 AFSTMGKIMKLGYEP-DTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLV 200

Query: 67  TGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKP--NVFC--------------------- 102
            GL   G ++  + L   MV  G       Y P  NV C                     
Sbjct: 201 NGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 260

Query: 103 -----YGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--------------- 137
                Y  +IDGLCKD  +D   +LF EM+ KG  A     NTL+               
Sbjct: 261 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKL 320

Query: 138 -----------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
                                   K+ KL EA++LL+ MMQRG+ P   TY  L++G+C 
Sbjct: 321 LRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------ 228
             ++  AI + D M  KG  PD+ ++++LINGYCK   +++ + + REM L G       
Sbjct: 381 ENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVT 440

Query: 229 -----------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                            KK+F EM    V P+  +  I +DGLC NG + + +E+F  +E
Sbjct: 441 YNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIE 500

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            S  EL + I+  +I G C     + A +LF  L  K +  D  AYNI+I  L ++  + 
Sbjct: 501 KSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLS 560

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFL 360
           K + L   M E G A D  T+N L+ + L
Sbjct: 561 KADILFRKMTEEGHAPDELTYNILIRAHL 589



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 157/326 (48%), Gaps = 26/326 (7%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
           DA  L + M      P V   + L + + +T    L L L ++M     +  GI   +++
Sbjct: 71  DAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQM-----ESKGIAH-SIY 124

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
               +I+  C+ R +        ++   G   +T+        LC + ++ EA  L++ M
Sbjct: 125 TLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRM 184

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           ++ G  P + T   L+NG CL GKV+ A+ L D M   GF P+  +Y  ++N  CK+   
Sbjct: 185 VEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQT 244

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
             AM + R+M            +  N+  +    +I IDGLCK+G +     LF  +EI 
Sbjct: 245 ALAMELLRKM------------EERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK 292

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             +  +  +N+LI G C  G ++  ++L   +  + +  +VV +++LI +  KEG++++ 
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREA 352

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
           + LL  M + G A +  T+N+L+  F
Sbjct: 353 DQLLKEMMQRGIAPNTITYNSLIDGF 378



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 14/221 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN LI G+C    I D  +L ++M+  G   N  T +TL+ G  ++G + +  KL QE
Sbjct: 404 MTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQE 463

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK------DKGINANTL-- 136
           MV+         +P++  Y  L+DGLC +  +++  ++F +++      D GI    +  
Sbjct: 464 MVSRR------VRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHG 517

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C  +K+ +A  L   +  +G+      Y  +++  C    ++ A  LF  M  +G  PD
Sbjct: 518 MCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPD 577

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
             +Y++LI  +  + +   A  +  EM  +GF    + +K+
Sbjct: 578 ELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKM 618



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 22/195 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+L++GFC  G +  A +L ++M +   RP++ +   L+ GL   G +   L++ 
Sbjct: 437 NTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEI- 495

Query: 83  QEMVNGMGDFGGIYKP----NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN---- 134
                    FG I K     ++  Y  +I G+C    VD   DLF  +  KG+  +    
Sbjct: 496 ---------FGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAY 546

Query: 135 ----TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
               + LC+K  L +A+ L   M + G  P   TY  L+  +        A  L + M  
Sbjct: 547 NIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKS 606

Query: 191 KGFMPDVFSYSVLIN 205
            GF  DV +  ++IN
Sbjct: 607 SGFPADVSTVKMVIN 621



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 23/241 (9%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           K  +A  L   M+Q    P +  +  L +      +  + +AL   M  KG    +++ S
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKK---IFN--------EMKLCNVV--------- 241
           ++IN +C+   +  A +   +++  G++    IFN        E ++   +         
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187

Query: 242 ---PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P   T N  ++GLC NG V + + L   +  +  +     +  ++   CK G   +A
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            EL  K+  +N+  D V Y+I+I  L K+G +     L   ME  G   D+ T+NTL+  
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGG 307

Query: 359 F 359
           F
Sbjct: 308 F 308


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 188/405 (46%), Gaps = 72/405 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TF +LI G C  G    A +L   M   GC+P+V T  T+I GL + G       L   
Sbjct: 162 ITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGL--- 218

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------- 135
            +  MG+ G   +P+V  Y +LID LCKDRLV++  D+F  MK KGI+            
Sbjct: 219 -IKKMGEVGC--QPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQG 275

Query: 136 ----------------------------------LLCKKTKLVEANRLLELMMQRGLNPV 161
                                             + CK+  ++EA  +L+ M + G+ P 
Sbjct: 276 LCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPN 335

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           + TY  L++GY L  +V  A  LFD M  +G  PDVFSYS+LINGYC    ++EA  +  
Sbjct: 336 VITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFN 395

Query: 222 EMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           EMI  G                        +++F +M     +P+  T ++ ++G CK G
Sbjct: 396 EMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQG 455

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           ++ +   LF  ++ +  +  + ++  LI   CK G    A +LF++L    L  DV  Y 
Sbjct: 456 YLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYT 515

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +I+ L KEG + +       MEE+GC  +  ++N ++  FLQ +
Sbjct: 516 TIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHK 560



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 169/416 (40%), Gaps = 95/416 (22%)

Query: 7   ALMAFGSFIRRCYRPLN-DVTFNSLIKGFCMEGNIRDAS-QLVKKMATFGCRPNVTTCDT 64
           AL +F   + R  +PL   + FN L+          DA   L K+M   G  PN  T + 
Sbjct: 74  ALASFNHMLHR--KPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNI 131

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           LI       +++L   +  +++  +G      +P +  + +LI+GLCK            
Sbjct: 132 LINCFCLMQHVDLGFSVLAKVIK-LG-----LQPTIITFTTLINGLCK------------ 173

Query: 125 EMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
                            +  +A  L + M+ RG  P ++TYT ++NG C +G+   A  L
Sbjct: 174 ---------------AGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGL 218

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------------- 230
              M   G  PDV +YS LI+  CK+  V EA+++   M   G                 
Sbjct: 219 IKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCS 278

Query: 231 ---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
                    + NEM   N++P+  T ++ ID  CK G+VLE   +  T+     E  V  
Sbjct: 279 FSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVIT 338

Query: 282 FNSLIRGC--------------------CKFGIFEI---------------ASELFNKLS 306
           +NSL+ G                     CK  +F                 A +LFN++ 
Sbjct: 339 YNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMI 398

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            + L  + V+Y  LIHA  + G++++   L   M  NG   D+ T++ L+  F ++
Sbjct: 399 HQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQ 454



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 24/231 (10%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           GL+P   T   L+N +CL+  V++  ++   + + G  P + +++ LING CK     +A
Sbjct: 121 GLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQA 180

Query: 217 MNVSREM--------------ILNGFKK---------IFNEMKLCNVVPETFTCNIFIDG 253
           + +  +M              I+NG  K         +  +M      P+  T +  ID 
Sbjct: 181 LELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDS 240

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK+  V E +++F  ++       V  + SLI+G C F  ++ AS + N+++  N++ D
Sbjct: 241 LCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPD 300

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF-LQKE 363
           +V +++LI    KEG + +   +L +M E G   +V T+N+LM  + LQ E
Sbjct: 301 IVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQME 351



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 19/236 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +V+ A   F   I R  +P  DV +++ LI G+CM   I +A QL  +M   G  PN  +
Sbjct: 351 EVVEARKLFDVMITRGCKP--DVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVS 408

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
             TLI    + G +    +L ++M  NG       Y P++  Y  L++G CK   + +  
Sbjct: 409 YTTLIHAFCQLGKLREARELFKDMHTNG-------YLPDLCTYSVLLEGFCKQGYLGKAF 461

Query: 121 DLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            LF  M+   +  N ++        CK   L  A +L   +   GL P +  YT ++NG 
Sbjct: 462 RLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGL 521

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           C  G ++ A+  F  M   G  P+ FSY+V+I G+ ++ +   A+ +  EM   GF
Sbjct: 522 CKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGF 577


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 199/449 (44%), Gaps = 96/449 (21%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A  A G  I+  Y P N +TF++LI G C+EG + +A +LV +M   G +P++ T +TL+
Sbjct: 240 AFSAMGKIIKLGYEP-NTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLV 298

Query: 67  TGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKP--NVFC--------------------- 102
            GL  +G     + L  +MV  G       Y P  NV C                     
Sbjct: 299 NGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 358

Query: 103 -----YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------------------- 136
                Y  +IDGLCK   +D   +LF EM+ KGI  N +                     
Sbjct: 359 LDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKL 418

Query: 137 ----------------------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
                                   K+ KL EA  L + M+ RG+ P   TYT L++G+C 
Sbjct: 419 LRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK 478

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------ 228
              ++ A  + D M  KG  P++ ++++LINGYCK   +++ + + R+M L G       
Sbjct: 479 ENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVT 538

Query: 229 -----------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                            K++F EM    V P   T  I +DGLC NG   + +E+F  +E
Sbjct: 539 YNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIE 598

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            S  EL + I+N +I G C     + A +LF  L  K +   V  YNI+I  L K+G + 
Sbjct: 599 KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLS 658

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFL 360
           +   L   MEE+G A D  T+N L+ + L
Sbjct: 659 EAELLFRKMEEDGHAPDGWTYNILIRAHL 687



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 160/357 (44%), Gaps = 26/357 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           +  FI R      ++++   ++   ++    DA  L + M      P V     L + + 
Sbjct: 138 YEDFIARMVANDRNLSYRERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIA 197

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           +T   +L L L ++M     +  GI   N++    +I+  C+ R +        ++   G
Sbjct: 198 KTKQYDLVLALCKQM-----ELKGIAH-NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLG 251

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
              NT+        LC + ++ EA  L++ M++ G  P + T   L+NG CL GK   A+
Sbjct: 252 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 311

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            L D M   G  P+  +Y  ++N  CK+     AM + R+M            +  N+  
Sbjct: 312 LLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKM------------EERNIKL 359

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +    +I IDGLCK+G +     LF  +E+      +  +N LI G C  G ++  ++L 
Sbjct: 360 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 419

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             +  + +  +VV +++LI +  KEG++++   L   M   G A D  T+ +L+  F
Sbjct: 420 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 476



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 37/217 (17%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI G+C    I D  +L +KM+  G   +  T +TLI G    G +N+  +L QEM
Sbjct: 503 TFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM 562

Query: 86  V---------------NGMGDFGGIYKP--------------NVFCYGSLIDGLCKDRLV 116
           V               +G+ D G   K               ++  Y  +I G+C    V
Sbjct: 563 VSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 622

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           D   DLF  +  KG+             LCKK  L EA  L   M + G  P  +TY  L
Sbjct: 623 DDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNIL 682

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           +  +   G    ++ L + + R GF  D  +  ++I+
Sbjct: 683 IRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 719


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 194/380 (51%), Gaps = 38/380 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R   +P + V FN LI  +  +  +  A  +  KM   G  PNV    T+I  L ++G
Sbjct: 367 MVRNGIQPDHHV-FNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSG 425

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
           +++  +   ++M+    D G    PN+  Y SLI GLC     D+ ++L +EM D+GI  
Sbjct: 426 SVDDAMLYFEQMI----DEG--LTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL 479

Query: 134 NTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           NT+         CK+ +++E+ +L +LM++ G+ P I TY  L++G CL GK++ A  L 
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------------- 228
            SM   G  PD+ +Y  LINGYC+   +++A+ + +EM+ +G                  
Sbjct: 540 ASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 599

Query: 229 ------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                 K+++  +       E  T NI + GLCKN    E + +F  L +++ +L    F
Sbjct: 600 RRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 659

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N +I    K G  + A +LF   S   LV DV  Y+++   L ++G +++ + L LSMEE
Sbjct: 660 NIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEE 719

Query: 343 NGCALDVDTFNTLMISFLQK 362
           NGC+ D    N+++   LQ+
Sbjct: 720 NGCSADSRMLNSIVRKLLQR 739



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 158/345 (45%), Gaps = 28/345 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++N+++ GF  EG+   A     +M   G  P+V T  ++I  L +   M+  ++
Sbjct: 198 PPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAME 257

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +   MV NG+        P+   Y S++ G C      +      +M+  G+  N +   
Sbjct: 258 VLNTMVKNGV-------MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYS 310

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +  EA ++ + M +RGL P I TY  LL GY   G +    AL D M R 
Sbjct: 311 SLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRN 370

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PD   +++LI  Y K   V++AM V            F++M+   + P        I
Sbjct: 371 GIQPDHHVFNILICAYAKQEKVDQAMLV------------FSKMRQHGLNPNVVCYGTVI 418

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           D LCK+G V + M  F  +        + ++ SLI G C    ++ A EL  ++  + + 
Sbjct: 419 DVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGIC 478

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            + + +N +I +  KEG++ +   L   M   G   D+ T+NTL+
Sbjct: 479 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 168/382 (43%), Gaps = 36/382 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ +++ +R ++ +TF  L+KG C +    DA  +V ++M   GC P+V + + L+ G
Sbjct: 114 ALGNVVKKGFR-VDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKG 172

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +   D GG   P+V  Y ++++G  K+   D+    + EM D
Sbjct: 173 LCDENRSQEALELLHMMAD---DRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLD 229

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  + +        LCK   + +A  +L  M++ G+ P   TY  +L+GYC  G+   
Sbjct: 230 RGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE 289

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
           AI     M   G  P+V +YS L+N  CKN    EA  +   M   G +           
Sbjct: 290 AIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQ 349

Query: 231 -------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        + + M    + P+    NI I    K   V + M +F  +       
Sbjct: 350 GYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNP 409

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  + ++I   CK G  + A   F ++  + L  +++ Y  LIH L    +  K   L+
Sbjct: 410 NVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELI 469

Query: 338 LSMEENGCALDVDTFNTLMISF 359
           L M + G  L+   FN+++ S 
Sbjct: 470 LEMLDRGICLNTIFFNSIIDSH 491



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 130/291 (44%), Gaps = 46/291 (15%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V+ +   F   +R   +P + +T+N+LI G C+ G + +A++L+  M + G +P++ T 
Sbjct: 496 RVIESEKLFDLMVRIGVKP-DIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTY 554

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            TLI G  R   M+  L L +EMV+      G+  PN+  Y  ++ GL   R     K+L
Sbjct: 555 GTLINGYCRVSRMDDALALFKEMVS-----SGV-SPNIITYNIILQGLFHTRRTAAAKEL 608

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           ++ +   G                   LEL           TY  +L+G C     + A+
Sbjct: 609 YVSITKSGTQ-----------------LELS----------TYNIILHGLCKNNLTDEAL 641

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            +F ++       +  +++++I    K   ++EA ++      NG             VP
Sbjct: 642 RMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGL------------VP 689

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +  T ++  + L + G + E+ +LF ++E + C     + NS++R   + G
Sbjct: 690 DVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRG 740



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 14/205 (6%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A   ++ +KGF  D  +++ L+ G C +    +AM
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN--- 274
           ++           +   M     +P+ F+ N  + GLC      E +EL   +       
Sbjct: 148 DI-----------VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGG 196

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
               V  +N+++ G  K G  + A   ++++  + ++ DVV Y+ +I AL K   + K  
Sbjct: 197 SPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAM 256

Query: 335 YLLLSMEENGCALDVDTFNTLMISF 359
            +L +M +NG   D  T+N+++  +
Sbjct: 257 EVLNTMVKNGVMPDCMTYNSILHGY 281


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 191/396 (48%), Gaps = 63/396 (15%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
            G  ++  Y+P N +   +L+KG C++G ++ +     K+   G + N  +  TL+ GL 
Sbjct: 190 LGKILKLGYQP-NTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLC 248

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G     +KL + M+          +P+V  Y ++IDGLCKD+LV++  D + EM  +G
Sbjct: 249 KIGETRCAIKLLR-MIEDRST-----RPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRG 302

Query: 131 I---------------------------NANTL----------------LCKKTKLVEAN 147
           I                           N  TL                LCK+ KL EA 
Sbjct: 303 IFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAK 362

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            LL +M + G+ P + TY+ L++GYCLVG+V+ A  +F +M +    P V SY+++ING 
Sbjct: 363 NLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGL 422

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK  +V+EAMN+ REM+              NVVP T T N  IDGLCK+G +   ++L 
Sbjct: 423 CKGKSVDEAMNLLREMLHK------------NVVPNTVTYNSLIDGLCKSGRITSALDLM 470

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             L        V  + SL+ G CK    + A  LF K+  + +  +   Y  LI  L K 
Sbjct: 471 KELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKG 530

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            ++K    L   +   GC +DV T+N +MI  L KE
Sbjct: 531 ARLKNAQKLFQHILVKGCCIDVYTYN-VMIGGLCKE 565



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 143/294 (48%), Gaps = 26/294 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  LI   C EG +++A  L+  M   G +PNV T  TL+ G    G ++   ++   M
Sbjct: 344 TYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAM 403

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           V           P+V  Y  +I+GLCK + VD+  +L  EM  K +  NT+        L
Sbjct: 404 VQTE------VNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGL 457

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++  A  L++ +  RG    + TYT LL+G C    ++ AIALF  M  +G  P+ 
Sbjct: 458 CKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNK 517

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           ++Y+ LI+G CK   ++ A  + + +++ G          C +  + +T N+ I GLCK 
Sbjct: 518 YTYTALIDGLCKGARLKNAQKLFQHILVKG----------CCI--DVYTYNVMIGGLCKE 565

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           G + E + +   +E + C      F  +IR   +    + A +L +++  K L+
Sbjct: 566 GMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLL 619



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 141/355 (39%), Gaps = 56/355 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           + F  ++       +   A  L K+M   G  P++ T   LI      G M  +  +  +
Sbjct: 133 IEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGK 192

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           ++  +G     Y+PN     +L+ GLC    V ++     ++  +G   N +        
Sbjct: 193 ILK-LG-----YQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQV-------- 238

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                              +Y  LLNG C +G+   AI L   +  +   PDV  Y+ +I
Sbjct: 239 -------------------SYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTII 279

Query: 205 NGYCKNFNVEEAMNVSREM-----------------------ILNGFKKIFNEMKLCNVV 241
           +G CK+  V EA +   EM                        L G   + NEM L N+ 
Sbjct: 280 DGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNIN 339

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+ +T  I ID LCK G + E   L   +     +  V  +++L+ G C  G    A ++
Sbjct: 340 PDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQI 399

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           F+ +    +   V +YNI+I+ L K   + +   LL  M       +  T+N+L+
Sbjct: 400 FHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLI 454



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 12/201 (5%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P I  +  +L     +     AI+L   M  KG  PD+ + S+LIN +C    +  + +
Sbjct: 129 TPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFS 188

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           V  +++  G++            P T      + GLC  G V + +     +     ++ 
Sbjct: 189 VLGKILKLGYQ------------PNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMN 236

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
              + +L+ G CK G    A +L   +  ++   DVV YN +I  L K+  + +      
Sbjct: 237 QVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYT 296

Query: 339 SMEENGCALDVDTFNTLMISF 359
            M   G   DV T++TL+  F
Sbjct: 297 EMNSRGIFPDVITYSTLICGF 317



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 16/148 (10%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           +P + +T+ SL+ G C   N+  A  L  KM   G +PN  T   LI GL +   +    
Sbjct: 478 QPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQ 537

Query: 80  KLHQE-MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           KL Q  +V G          +V+ Y  +I GLCK+ ++D+   +  +M+D G   + +  
Sbjct: 538 KLFQHILVKGCCI-------DVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTF 590

Query: 137 ------LCKKTKLVEANRLLELMMQRGL 158
                 L +K +  +A +LL  M+ +GL
Sbjct: 591 EIIIRSLFEKDENDKAEKLLHEMIAKGL 618


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 183/369 (49%), Gaps = 38/369 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL   G  ++  Y P + VT  SL+ GFC    + DA  LV KM   G RP++   + +I
Sbjct: 139 ALSVLGKMLKLGYEP-DRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAII 197

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             L +T  +N  L   +E+    G  G   +PNV  Y +L++GLC     +    L  +M
Sbjct: 198 DSLCKTRRVNDALDFFKEI----GRKG--IRPNVVTYTALVNGLCNSGRWNDAARLLRDM 251

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             + I  N +          K  K++EA  + E M++  ++P I TY+ L+NG CL  ++
Sbjct: 252 IKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRI 311

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
           + A  +FD M  KG  PDV SY+ LING+CK   VE+ M + R+M              +
Sbjct: 312 DEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTL 371

Query: 225 LNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           + GF         ++ F++M    V P+ +T NI + GLC NG + + + +F  ++ S  
Sbjct: 372 IQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEM 431

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           +L +  + ++I+G CK G  E A  LF  LS K L  D+V Y  ++  L  +G   +   
Sbjct: 432 DLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEA 491

Query: 336 LLLSMEENG 344
           L   M++ G
Sbjct: 492 LYTKMKQEG 500



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 155/335 (46%), Gaps = 46/335 (13%)

Query: 23  NDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ND+ TFN +I  FC    +  A  ++ KM   G  P+  T  +L+ G  R   ++  + L
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
             +MV    + G  Y+P++  Y ++ID LCK R V+   D F E+  KGI          
Sbjct: 178 VDKMV----EIG--YRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIR--------- 222

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                             P + TYT L+NG C  G+ N A  L   M ++   P+V +YS
Sbjct: 223 ------------------PNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYS 264

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            L++ + KN  V EA            K+IF EM   ++ P+  T +  I+GLC +  + 
Sbjct: 265 ALLDAFVKNGKVLEA------------KEIFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           E  ++F  +    C   V  +N+LI G CK    E   +LF K+S + LV + V YN LI
Sbjct: 313 EANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLI 372

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               + G + K       M+  G + D+ T+N L+
Sbjct: 373 QGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILL 407



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 17/244 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KVL A   F   +R    P + VT++SLI G C+   I +A+Q+   M + GC P+V + 
Sbjct: 275 KVLEAKEIFEEMVRMSIDP-DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSY 333

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI G  +   +   +KL ++M        G+   N   Y +LI G  +   VD+ ++ 
Sbjct: 334 NTLINGFCKAKRVEDGMKLFRKMSQR-----GLVN-NTVTYNTLIQGFFQVGDVDKAQEF 387

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F +M   G++ +          LC    L +A  + E M +  ++  I TYT ++ G C 
Sbjct: 388 FSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCK 447

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            GKV  A  LF S++ KG  PD+ +Y+ +++G C      E   +  +M   G  K  N+
Sbjct: 448 TGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMK--ND 505

Query: 235 MKLC 238
             LC
Sbjct: 506 SMLC 509


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 194/380 (51%), Gaps = 38/380 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R   +P + V FN LI  +  +  +  A  +  KM   G  PNV    T+I  L ++G
Sbjct: 367 MVRNGIQPDHHV-FNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSG 425

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
           +++  +   ++M+    D G    PN+  Y SLI GLC     D+ ++L +EM D+GI  
Sbjct: 426 SVDDAMLYFEQMI----DEG--LTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL 479

Query: 134 NTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           NT+         CK+ +++E+ +L +LM++ G+ P I TY  L++G CL GK++ A  L 
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------------- 228
            SM   G  PD+ +Y  LINGYC+   +++A+ + +EM+ +G                  
Sbjct: 540 ASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 599

Query: 229 ------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                 K+++  +       E  T NI + GLCKN    E + +F  L +++ +L    F
Sbjct: 600 RRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 659

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N +I    K G  + A +LF   S   LV DV  Y+++   L ++G +++ + L LSMEE
Sbjct: 660 NIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEE 719

Query: 343 NGCALDVDTFNTLMISFLQK 362
           NGC+ D    N+++   LQ+
Sbjct: 720 NGCSADSRMLNSIVRKLLQR 739



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 168/382 (43%), Gaps = 36/382 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ +++ +R ++ +TF  L+KG C +    DA  +V ++M   GC P+V + + L+ G
Sbjct: 114 ALGNVVKKGFR-VDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKG 172

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +   D GG   P+V  Y ++++G  K+   D+    + EM D
Sbjct: 173 LCDENRSQEALELLHMMAD---DRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLD 229

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  + +        LCK   + +A  +L  M++ G+ P   TY  +L+GYC  G+   
Sbjct: 230 RGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE 289

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
           AI     M   G  P+V +YS L+N  CKN    EA  +   M   G +           
Sbjct: 290 AIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQ 349

Query: 231 -------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        + + M    + P+    NI I    K   V + M +F  +       
Sbjct: 350 GYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNP 409

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  + ++I   CK G  + A   F ++  + L  +++ Y  LIH L    +  K   L+
Sbjct: 410 NVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELI 469

Query: 338 LSMEENGCALDVDTFNTLMISF 359
           L M + G  L+   FN+++ S 
Sbjct: 470 LEMLDRGICLNTIFFNSIIDSH 491



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 158/345 (45%), Gaps = 28/345 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++N+++ GF  EG+   A     +M   G  P+V T  ++I  L +   M+  ++
Sbjct: 198 PPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAME 257

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +   MV NG+        P+   Y S++ G C      +      +M+  G+  N +   
Sbjct: 258 VLNTMVKNGV-------MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYS 310

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +  EA ++ + M +RGL P I TY  LL GY   G +    AL D M R 
Sbjct: 311 SLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRN 370

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PD   +++LI  Y K   V++AM V            F++M+   + P        I
Sbjct: 371 GIQPDHHVFNILICAYAKQEKVDQAMLV------------FSKMRQHGLNPNVVCYGTVI 418

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           D LCK+G V + M  F  +        + ++ SLI G C    ++ A EL  ++  + + 
Sbjct: 419 DVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGIC 478

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            + + +N +I +  KEG++ +   L   M   G   D+ T+NTL+
Sbjct: 479 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 130/291 (44%), Gaps = 46/291 (15%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V+ +   F   +R   +P + +T+N+LI G C+ G + +A++L+  M + G +P++ T 
Sbjct: 496 RVIESEKLFDLMVRIGVKP-DIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTY 554

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            TLI G  R   M+  L L +EMV+      G+  PN+  Y  ++ GL   R     K+L
Sbjct: 555 GTLINGYCRVSRMDDALALFKEMVS-----SGV-SPNIITYNIILQGLFHTRRTAAAKEL 608

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           ++ +   G                   LEL           TY  +L+G C     + A+
Sbjct: 609 YVSITKSGTQ-----------------LELS----------TYNIILHGLCKNNLTDEAL 641

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            +F ++       +  +++++I    K   ++EA ++      NG             VP
Sbjct: 642 RMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGL------------VP 689

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +  T ++  + L + G + E+ +LF ++E + C     + NS++R   + G
Sbjct: 690 DVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRG 740



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 14/205 (6%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A   ++ +KGF  D  +++ L+ G C +    +AM
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN--- 274
           ++           +   M     +P+ F+ N  + GLC      E +EL   +       
Sbjct: 148 DI-----------VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGG 196

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
               V  +N+++ G  K G  + A   ++++  + ++ DVV Y+ +I AL K   + K  
Sbjct: 197 SPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAM 256

Query: 335 YLLLSMEENGCALDVDTFNTLMISF 359
            +L +M +NG   D  T+N+++  +
Sbjct: 257 EVLNTMVKNGVMPDCMTYNSILHGY 281


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 199/449 (44%), Gaps = 96/449 (21%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A  A G  I+  Y P N +TF++LI G C+EG + +A +LV +M   G +P++ T +TL+
Sbjct: 142 AFSAMGKIIKLGYEP-NTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLV 200

Query: 67  TGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKP--NVFC--------------------- 102
            GL  +G     + L  +MV  G       Y P  NV C                     
Sbjct: 201 NGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 260

Query: 103 -----YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------------------- 136
                Y  +IDGLCK   +D   +LF EM+ KGI  N +                     
Sbjct: 261 LDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKL 320

Query: 137 ----------------------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
                                   K+ KL EA  L + M+ RG+ P   TYT L++G+C 
Sbjct: 321 LRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK 380

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------ 228
              ++ A  + D M  KG  P++ ++++LINGYCK   +++ + + R+M L G       
Sbjct: 381 ENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVT 440

Query: 229 -----------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                            K++F EM    V P   T  I +DGLC NG   + +E+F  +E
Sbjct: 441 YNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIE 500

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            S  EL + I+N +I G C     + A +LF  L  K +   V  YNI+I  L K+G + 
Sbjct: 501 KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLS 560

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFL 360
           +   L   MEE+G A D  T+N L+ + L
Sbjct: 561 EAELLFRKMEEDGHAPDGWTYNILIRAHL 589



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
           DA  L + M      P V     L + + +T   +L L L ++M     +  GI   N++
Sbjct: 71  DAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM-----ELKGIAH-NLY 124

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
               +I+  C+ R +        ++   G   NT+        LC + ++ EA  L++ M
Sbjct: 125 TLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 184

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           ++ G  P + T   L+NG CL GK   A+ L D M   G  P+  +Y  ++N  CK+   
Sbjct: 185 VEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQT 244

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
             AM + R+M            +  N+  +    +I IDGLCK+G +     LF  +E+ 
Sbjct: 245 ALAMELLRKM------------EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMK 292

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
                +  +N LI G C  G ++  ++L   +  + +  +VV +++LI +  KEG++++ 
Sbjct: 293 GITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREA 352

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
             L   M   G A D  T+ +L+  F
Sbjct: 353 EELHKEMIHRGIAPDTITYTSLIDGF 378



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 37/217 (17%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI G+C    I D  +L +KM+  G   +  T +TLI G    G +N+  +L QEM
Sbjct: 405 TFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM 464

Query: 86  V---------------NGMGDFGGIYKP--------------NVFCYGSLIDGLCKDRLV 116
           V               +G+ D G   K               ++  Y  +I G+C    V
Sbjct: 465 VSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 524

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           D   DLF  +  KG+             LCKK  L EA  L   M + G  P  +TY  L
Sbjct: 525 DDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNIL 584

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           +  +   G    ++ L + + R GF  D  +  ++I+
Sbjct: 585 IRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 621


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 188/392 (47%), Gaps = 62/392 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A    G  ++R Y+P N++T  +++KG C+ G ++ A      +A  G   +     TLI
Sbjct: 138 AFSVLGIVLKRGYQP-NNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLI 196

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G      +L QEM       G + KPN+  Y  +ID  CKD L  + +DL++++
Sbjct: 197 NGLCKIGRSIDAFQLLQEME------GQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKI 250

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
            D GI+ + L                                            C+K K+
Sbjct: 251 VDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKM 310

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           +EA  +  LM++RG  P I T+  L++G+CL G V  A  LFD++  +G +PDV+SY++L
Sbjct: 311 IEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTIL 370

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I GYCK   ++EA++            +FNEM+  N+V +    +  IDGLCK+G +   
Sbjct: 371 IIGYCKCKRIDEAVS------------LFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYA 418

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
            ELF T+        V  +N LI   CK    ++  ELF  +  K L   V+ YNILI+ 
Sbjct: 419 WELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILING 478

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
             K  +I++   LL  M+    A D  T+N+L
Sbjct: 479 YCKSKRIREAMNLLSVMQSKNLAPDSITYNSL 510



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 121/268 (45%), Gaps = 31/268 (11%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K++ A   F   ++R  +P + VTFN+LI G C+ GN+ +A +L   +   G  P+V + 
Sbjct: 309 KMIEAQGMFNLMVKRGQQP-DIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSY 367

Query: 63  DTLITGLRRTGNMNLTLKLHQEMV--NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
             LI G  +   ++  + L  EM   N + D        +  Y SLIDGLCK   +    
Sbjct: 368 TILIIGYCKCKRIDEAVSLFNEMRCKNMVLD--------IVLYSSLIDGLCKSGRISYAW 419

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +LF  + + G   N +         CK   +     L +LM  +GL P + TY  L+NGY
Sbjct: 420 ELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGY 479

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C   ++  A+ L   M  K   PD  +Y+ L +G CK+  + +A             ++F
Sbjct: 480 CKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAW------------ELF 527

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHV 260
             M +     +  T N+ +D  CK   V
Sbjct: 528 KVMHVGGPPVDVATYNVLLDAFCKAQDV 555



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+V  + ++I  + K +       L  +M  KG+  +           C   ++  A  +
Sbjct: 82  PSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSV 141

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L ++++RG  P   T T ++ G C+ G+V  A+   D++A +G + D   Y  LING CK
Sbjct: 142 LGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCK 201

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                    + R   ++ F ++  EM+   V P     N+ ID  CK+    +  +L+  
Sbjct: 202 ---------IGRS--IDAF-QLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLK 249

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     +  +  + SLIRG C+ G +    +L  ++  KN+  +V  +N+LI A  ++G+
Sbjct: 250 IVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGK 309

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           + +   +   M + G   D+ TFNTL+
Sbjct: 310 MIEAQGMFNLMVKRGQQPDIVTFNTLI 336



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 25/222 (11%)

Query: 163 FTYTPLLNGYCLVG--KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
           F++ P  N   L     ++ A+ LF+ +     +P V  ++ +I    K  +   A+++ 
Sbjct: 48  FSHCPKQNAKILSSFNGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLL 107

Query: 221 REMILNGF-KKIFN------------EMKLCNVV----------PETFTCNIFIDGLCKN 257
           ++M+  G    IF             EM     V          P   T    + GLC N
Sbjct: 108 KQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCIN 167

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V + M+    +      L    + +LI G CK G    A +L  ++  + +  ++V Y
Sbjct: 168 GEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIY 227

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N++I +  K+    K   L L + + G   D+ T+ +L+  F
Sbjct: 228 NMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGF 269


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 192/421 (45%), Gaps = 73/421 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   I+   +P + VTFN+LI G C  G    A +        GC+P V T  T+I
Sbjct: 149 AFSVFSKMIKLGLQP-DAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTII 207

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G       L ++M           +PNV  Y  LID LCKD+LV++  D+F  M
Sbjct: 208 NGLCKIGETTAAAGLFKKMEEAGC------QPNVVTYNILIDSLCKDKLVNEALDIFSYM 261

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
           K K I+ +                                             +CK+ K+
Sbjct: 262 KAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKV 321

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA  + + M + G+ P + TY+ L+ GY L  ++  A  LFD+M  KG  PD FSY++L
Sbjct: 322 SEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNIL 381

Query: 204 INGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLCNV 240
           I GYCK   ++EA  +  EMI  G                        + +F  M     
Sbjct: 382 IKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGN 441

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           +P+ FT ++ +DG CK G++ +   LF  ++ +  +  + ++N LI   CKFG  + A +
Sbjct: 442 LPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARK 501

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF++L  + L+ +V  Y  +I+ L KEG + +      +ME +GC  D  ++N ++  FL
Sbjct: 502 LFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFL 561

Query: 361 Q 361
           Q
Sbjct: 562 Q 562



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 156/343 (45%), Gaps = 28/343 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T + LI  F     +  A  +  KM   G +P+  T +TLI GL + G          + 
Sbjct: 132 TLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKF-------AQA 184

Query: 86  VNGMGDFGGIY-KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           V    DF     +P V+ Y ++I+GLCK         LF +M++ G   N +        
Sbjct: 185 VEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDS 244

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   + EA  +   M  + ++P IFTY  L+ G C   +   A AL + M     MP+
Sbjct: 245 LCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPN 304

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           +F+++VL++  CK   V EA  V            F  M    V P+  T +  + G   
Sbjct: 305 IFTFNVLVDAICKEGKVSEAQGV------------FKTMTEMGVEPDVVTYSSLMYGYSL 352

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              ++E  +LF  +    C+     +N LI+G CK    + A +LFN++  + L  D V 
Sbjct: 353 RMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVN 412

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           YN LIH L + G++++   L  +M  NG   D+ T++ L+  F
Sbjct: 413 YNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGF 455



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 15/234 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +++ A   F + I +  +P +  ++N LIKG+C    I +A QL  +M   G  P+    
Sbjct: 355 EIVEARKLFDAMITKGCKP-DAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNY 413

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI GL + G     L+  Q++   M   G +  P++F Y  L+DG CK+  + +   L
Sbjct: 414 NTLIHGLCQLGR----LREAQDLFKNMHSNGNL--PDLFTYSMLLDGFCKEGYLGKAFRL 467

Query: 123 FMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F  M+   +  +          +CK   L +A +L   +  +GL P +  YT ++N  C 
Sbjct: 468 FRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCK 527

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
            G ++ A+  F +M   G  PD FSY+V+I G+ +  +   A  +  EM   GF
Sbjct: 528 EGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGF 581



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 13/205 (6%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKV-NVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
           M+ R   P I  +T LL+    +G+     I+L   M   G  PD+++ S+LI+ +    
Sbjct: 85  MLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQ 144

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            V+ A +V  +MI  G +            P+  T N  I+GLCK G   + +E F   E
Sbjct: 145 RVDLAFSVFSKMIKLGLQ------------PDAVTFNTLINGLCKVGKFAQAVEFFDDFE 192

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            S C+  V  + ++I G CK G    A+ LF K+       +VV YNILI +L K+  + 
Sbjct: 193 ASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVN 252

Query: 332 KENYLLLSMEENGCALDVDTFNTLM 356
           +   +   M+    + D+ T+N+L+
Sbjct: 253 EALDIFSYMKAKRISPDIFTYNSLI 277


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 198/423 (46%), Gaps = 73/423 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           +       ++  Y P N +T  +LIKG C++G I  A Q   K+   G   N  +  TLI
Sbjct: 126 SFSVLAKILKMGYEP-NVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLI 184

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G  +  L+L + +       G + +PNV  Y ++ID +CK +LV++  DL+ EM
Sbjct: 185 NGLCKVGQTSAALQLLRRVD------GKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 238

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             KGI+ + +                                            CK+ +L
Sbjct: 239 VSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRL 298

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA  +L +MM++G+ P +FTY  L++ YCLV +VN A  +F++++++G  P++ SYS++
Sbjct: 299 KEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIM 358

Query: 204 INGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMKLCNV 240
           I+G+CK   V+EAMN+ +EM              +++G           K+ +EM    V
Sbjct: 359 IHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGV 418

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
             +  T N  +D LCKN  V + + L   ++    +  +  + +L+ G CK G  E A  
Sbjct: 419 PHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARI 478

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           +F  L  K  + DV  Y  +I      G   +   LL  MEENGC  +  T+  ++ S  
Sbjct: 479 VFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLF 538

Query: 361 QKE 363
            K+
Sbjct: 539 DKD 541



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 149/363 (41%), Gaps = 64/363 (17%)

Query: 56  RPNVTTCDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDR 114
           +P++     ++  L ++ + +  + LH++M  NG+     I    + C+  L  G     
Sbjct: 69  KPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQL--GQNPLS 126

Query: 115 LVDQTKDLFMEMKDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
                K L M  +   I   TL   LC K ++ +A +  + ++  G +    +Y  L+NG
Sbjct: 127 FSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLING 186

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK- 230
            C VG+ + A+ L   +  K   P+V  Y+ +I+  CK   V EA ++  EM+  G    
Sbjct: 187 LCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPD 246

Query: 231 ----------------------IFNEMKLCNVVPETFTCNIFIDGLCKN------GHVLE 262
                                 +FN+M   N+ P  +T NI +DG CK        +VL 
Sbjct: 247 VVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLA 306

Query: 263 VM-----------------------------ELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +M                              +F T+        +  ++ +I G CK  
Sbjct: 307 MMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIK 366

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A  LF ++ C N++ DVV YN LI  L K G+I     L+  M + G   D  T+N
Sbjct: 367 KVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYN 426

Query: 354 TLM 356
           +++
Sbjct: 427 SIL 429



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 16/221 (7%)

Query: 140 KTKLVEA-NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  LV + NRLL    Q+   P IF +  +L         +  ++L   M   G   D+ 
Sbjct: 52  KHNLVSSFNRLLH---QKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLV 108

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
             S+LIN + +      + +V  +++  G++            P   T    I GLC  G
Sbjct: 109 ILSILINCFSQLGQNPLSFSVLAKILKMGYE------------PNVITLTTLIKGLCLKG 156

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + + ++    +      L    + +LI G CK G    A +L  ++  K +  +VV YN
Sbjct: 157 QIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYN 216

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +I ++ K   + +   L   M   G + DV T+N L+  F
Sbjct: 217 TIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGF 257


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 179/345 (51%), Gaps = 26/345 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+  +I   C +G + DA     +M T G + NV T ++LI      G  +   +L ++
Sbjct: 266 VTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRD 325

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+           PNV  + +LID L K+  + + KDL+ EM  +GI  NT+        
Sbjct: 326 MITRK------ITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYG 379

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +L EAN++++LM+ +G +P I+TY  L+NG+C   +V+  + LF  M+ +G + D
Sbjct: 380 LCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIAD 439

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +YS LI G+C+          SR++I+   KK+F EM    V P   T  I +DGLC 
Sbjct: 440 TVTYSTLIQGFCQ----------SRKLIVA--KKVFQEMVSQGVHPGIMTYAILLDGLCD 487

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG + E + +   +     EL + I+N +I G C     + A  LF  L  K +  D+ +
Sbjct: 488 NGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQS 547

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           YNI++  L K   + + + L   M+E+G   D  T+NTL+ + L+
Sbjct: 548 YNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLR 592



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 132/290 (45%), Gaps = 31/290 (10%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TL------LCKKTKLVEANRL 149
           P V  +  L   L + +  D    L  +M+ KGI  +  TL       C++ KL  A   
Sbjct: 88  PTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSA 147

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           +  + + G  P   T+  LLNG CL G+V  A+ L D M     +PD+ + + ++NG C 
Sbjct: 148 MGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCL 207

Query: 210 NFNVEEAMNVSREMILNG-------FKKIFN----------------EMKLCNVVPETFT 246
              V EA+++   M+ NG       +  I N                +M+   + P   T
Sbjct: 208 KDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVT 267

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
             I ID LCK+G + + +  F  +E    +  V  +NSLI   C FG ++  ++L   + 
Sbjct: 268 YTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMI 327

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            + +  +VV ++ LI +L KEG++ +   L   M   G   +  T+N+L+
Sbjct: 328 TRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLI 377



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 14/221 (6%)

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K+  LV A  L + M  +G+   ++T   ++N +C   K+  A +    + + G+ P+  
Sbjct: 104 KQYDLVLA--LCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTV 161

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ L+NG C    V EA+ +   M+L+              VP+  T N  ++GLC   
Sbjct: 162 TFNTLLNGLCLEGRVFEAVELVDCMVLSQH------------VPDLITLNTIVNGLCLKD 209

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            V E ++L   +  + C+     +  ++   CK G    A +L  K+  + +   VV Y 
Sbjct: 210 RVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYT 269

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           I+I  L K+G++         ME  G   +V T+N+L+ SF
Sbjct: 270 IIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSF 310



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 14/191 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+++LI+GFC    +  A ++ ++M + G  P + T   L+ GL   G +   L + 
Sbjct: 439 DTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGIL 498

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
            +M     +       ++  Y  +I G+C    VD    LF  +  KG+  +        
Sbjct: 499 DQMHKCKMEL------DIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIML 552

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           + LCK++ L EA+ L   M + G  P   TY  L+  +     +  ++ L + M R GF 
Sbjct: 553 SGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFS 612

Query: 195 PDVFSYSVLIN 205
            D  +  ++++
Sbjct: 613 SDASTVKIVMD 623


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 183/408 (44%), Gaps = 73/408 (17%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRTGNMNLTL 79
           P N+VTF +LI+G   E  ++DA  L KK+     C P+     T++ GL + G+     
Sbjct: 139 PYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAF 198

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            L + M  G      I KP+   Y  +ID  CKD ++D    L  EMK K I  + +   
Sbjct: 199 DLLRLMEQG------ITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYT 252

Query: 137 ----------------------------------------LCKKTKLVEANRLLELMMQR 156
                                                   LCK+ K+ +A  ++  M+++
Sbjct: 253 SLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEK 312

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+ P   TY  +++GYCL G++  A  +FDSM  KG  PD+ SY+ LINGY +   +++A
Sbjct: 313 GVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKA 372

Query: 217 MNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTCNIFIDG 253
           M + RE+  NG K                         F+EM+    +P  +T    + G
Sbjct: 373 MQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGG 432

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             KNG V E M  F  LE    +  ++I+ ++I G CK G  + A   F KL    L  D
Sbjct: 433 YFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPD 492

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           V+ Y  +I    +EG + +   +L  ME+NGC  D  T+N ++  F +
Sbjct: 493 VITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFR 540



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 26/256 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F S I +   P + +++ +LI G+  +  +  A QL ++++  G +P++ TC  L+
Sbjct: 337 ARRIFDSMIDKGIEP-DIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLL 395

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   G          EM       G I  PN++ + +L+ G  K+ LV++    F ++
Sbjct: 396 RGLFEVGRTECAKIFFDEMQAA----GHI--PNLYTHCTLLGGYFKNGLVEEAMSHFHKL 449

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           + +  + N          LCK  KL +A+   E +   GL+P + TYT +++GYC  G +
Sbjct: 450 ERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLL 509

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--------- 229
           + A  +   M   G +PD  +Y+V++ G+ ++  V E     +E+    F          
Sbjct: 510 DEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELL 569

Query: 230 --KIFNEMKLCNVVPE 243
              I  +  L N++PE
Sbjct: 570 MDIIAEDPSLLNMIPE 585



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 147/334 (44%), Gaps = 33/334 (9%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP-NV 100
           DA  L ++M T    P+  +   L+  L       + +K +  +V+   +   +  P + 
Sbjct: 55  DAFSLFRQMVTTKPLPSAVSFSKLLKAL-------VHMKHYSSVVSIFREIHKLRIPVDA 107

Query: 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
           F   ++++  C     D    +      KGI  N +        L  + K+ +A  L + 
Sbjct: 108 FALSTVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKK 167

Query: 153 MMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
           +++  +  P    Y  +++G C  G    A  L   M +    PD   Y+++I+ +CK+ 
Sbjct: 168 LVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKD- 226

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                       +L+G   + NEMK  N+ P+  T    IDGL K     +V  LF  LE
Sbjct: 227 -----------GMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLF--LE 273

Query: 272 ISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           + +  ++ ++  FNS+I G CK G  E A E+   +  K +  + + YN+++      GQ
Sbjct: 274 MIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQ 333

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + +   +  SM + G   D+ ++  L+  +++K+
Sbjct: 334 MGRARRIFDSMIDKGIEPDIISYTALINGYVEKK 367


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 179/344 (52%), Gaps = 26/344 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P  DVT N LI GFC +G I  A   +++  + G RP+  T +TL+ GL + G+    ++
Sbjct: 270 PCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAME 329

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           +   M+      GG+  P+++ Y SLI GLCK   +++   +  +M  +  + N +    
Sbjct: 330 VVDAML-----LGGL-DPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNA 383

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK+ ++ EA  +  L+  +G+ P + T+  L+ G CL      A+ LF+ M  KG
Sbjct: 384 IISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKG 443

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD F+Y++LI+  C +  +EEA+N+ +EM LNG  +        NVV      N  ID
Sbjct: 444 CRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCAR--------NVV----IYNTLID 491

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CKN  + E  E+F  +E+         +N+LI G CK    E A++L +++  + L  
Sbjct: 492 GFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRP 551

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D   YN L+    K G IKK   ++ +M  +GC  D+ T+ TL+
Sbjct: 552 DKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLI 595



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 184/383 (48%), Gaps = 42/383 (10%)

Query: 10  AFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           A  S +RR  R  +DV TFN LIK  C    +R A  ++++M ++G  P+ TT  T++ G
Sbjct: 190 AHSSMVRRRIR--HDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQG 247

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKP-NVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
               GN++  L++ ++MV    ++G    P        LI+G CK   +DQ      E  
Sbjct: 248 YIEGGNLDGALRIKEQMV----EYGC---PCTDVTVNVLINGFCKQGRIDQALSFIQEAV 300

Query: 128 DKGINA-----NTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
            +G        NTL   LCK      A  +++ M+  GL+P I+TY  L++G C +G++ 
Sbjct: 301 SEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIE 360

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------- 228
            A+ + D M  +   P+  +Y+ +I+  CK   V+EA  ++R +   G            
Sbjct: 361 EAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLI 420

Query: 229 ------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
                         +F EMK     P+ FT N+ ID LC +  + E + L   +E++ C 
Sbjct: 421 QGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCA 480

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             V I+N+LI G CK    E A E+F+++  + +  D V YN LI  L K  +++    L
Sbjct: 481 RNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQL 540

Query: 337 LLSMEENGCALDVDTFNTLMISF 359
           +  M   G   D  T+N+L+  F
Sbjct: 541 MDQMIMEGLRPDKFTYNSLLTHF 563



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 135/270 (50%), Gaps = 40/270 (14%)

Query: 22  LNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           L DV TFNSLI+G C+  N + A  L ++M   GCRP+  T + LI  L  +  +   L 
Sbjct: 410 LPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALN 469

Query: 81  LHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           L +EM +NG          NV  Y +LIDG CK++ +++ +++F EM+ +G++ +++   
Sbjct: 470 LLKEMELNGCAR-------NVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYN 522

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  ++ +A +L++ M+  GL P  FTY  LL  +C  G +  A  +  +M   
Sbjct: 523 TLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSS 582

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG---------------FK------- 229
           G  PD+ +Y+ LI+G CK   V+ A  + R + + G               FK       
Sbjct: 583 GCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEA 642

Query: 230 -KIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            ++F EM   +  P+  T  I   GLC  G
Sbjct: 643 MRLFREMLDKSEPPDAITYKIVYRGLCNGG 672



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 18/202 (8%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + +V  A       I    RP +  T+NSL+  FC  G+I+ A+ +V+ M + GC P++ 
Sbjct: 531 SKRVEDAAQLMDQMIMEGLRP-DKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIV 589

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           T  TLI+GL + G + +  +L + + + GM     +  P+   Y  +I  L K     + 
Sbjct: 590 TYATLISGLCKAGRVQVASRLLRSIQMKGM-----VLTPHA--YNPVIQALFKRNRTHEA 642

Query: 120 KDLFMEMKDKGINANTLLCKKT---------KLVEANRLLELMMQRGLNPVIFTYTPLLN 170
             LF EM DK    + +  K            + EA      M++RG  P   ++  L  
Sbjct: 643 MRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAE 702

Query: 171 GYCLVGKVNVAIALFDSMARKG 192
           G C +   +  + L D +  K 
Sbjct: 703 GLCTLSMDDTLVKLVDMIMEKA 724


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 193/400 (48%), Gaps = 62/400 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F + ++R + P N +T N+LIKG C  G I+ A     ++   G + +  +  TLI
Sbjct: 111 AFSVFANILKRGFHP-NAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLI 169

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL +TG      +L +++       G   KP+V  Y ++I+ LCK++L+    D++ EM
Sbjct: 170 NGLCKTGETKAVARLLRKLE------GHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEM 223

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             KGI+ + +                                           L K+ K+
Sbjct: 224 IVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKM 283

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA  LL +MM+  + P +FTY  L++GY LV +V  A  +F SMA++G  PDV  Y+ +
Sbjct: 284 KEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNM 343

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           ING CK   V+EAM+            +F EMK  N++P+  T N  IDGLCKN H+   
Sbjct: 344 INGLCKTKMVDEAMS------------LFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERA 391

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           + L   ++    +  V  +  L+ G CK G  E A E+F +L  K    +V AY +LI+ 
Sbjct: 392 IALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINR 451

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           L K G   +   L   ME+ GC  D  TF+ ++ +  +K+
Sbjct: 452 LCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKD 491



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 125/267 (46%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TL------LCKKTKLVEANRL 149
           P  F + +++  L  ++       LF + +  GI  +  TL       C +  +  A  +
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              +++RG +P   T   L+ G C  G++  A+   D +  +GF  D  SY  LING CK
Sbjct: 115 FANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCK 174

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                E   V+R         +  +++  +V P+    N  I+ LCKN  + +  +++  
Sbjct: 175 ---TGETKAVAR---------LLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSE 222

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           + +      V  + +LI G C  G  + A  L N++  KN+  +V  +NILI AL KEG+
Sbjct: 223 MIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGK 282

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           +K+   LL  M +     DV T+N+L+
Sbjct: 283 MKEAKILLAVMMKACIKPDVFTYNSLI 309



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 22/238 (9%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           +K+L A+M     ++ C +P  DV T+NSLI G+ +   ++ A  +   MA  G  P+V 
Sbjct: 286 AKILLAVM-----MKACIKP--DVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQ 338

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
               +I GL +T  ++  + L +EM +          P++  Y SLIDGLCK+  +++  
Sbjct: 339 CYTNMINGLCKTKMVDEAMSLFEEMKHKN------MIPDIVTYNSLIDGLCKNHHLERAI 392

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L   MK++GI  +          LCK  +L +A  + + ++ +G +  +  YT L+N  
Sbjct: 393 ALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRL 452

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
           C  G  + A+ L   M  KG MPD  ++ ++I    +    ++A  + REMI  G  K
Sbjct: 453 CKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGLLK 510



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 12/208 (5%)

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
           LM+     P  F +  +L+           I+LF      G  PD+ + S+LIN +C   
Sbjct: 47  LMLLMRPPPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQA 106

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
           ++  A +V   ++  GF             P   T N  I GLC  G + + +     L 
Sbjct: 107 HITLAFSVFANILKRGFH------------PNAITLNTLIKGLCFRGEIKKALYFHDQLV 154

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
               +L    + +LI G CK G  +  + L  KL   ++  DVV YN +I++L K   + 
Sbjct: 155 AQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLG 214

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
               +   M   G + DV T+ TL+  F
Sbjct: 215 DACDVYSEMIVKGISPDVVTYTTLIHGF 242



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 62/163 (38%), Gaps = 35/163 (21%)

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE-------------ISNC--- 275
           FN M L    P TF  N  +  L  N H   V+ LF   E             + NC   
Sbjct: 45  FNLMLLMRPPPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCH 104

Query: 276 --------ELFVEI-----------FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
                    +F  I            N+LI+G C  G  + A    ++L  +    D V+
Sbjct: 105 QAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVS 164

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y  LI+ L K G+ K    LL  +E +    DV  +NT++ S 
Sbjct: 165 YGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSL 207


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 109/354 (30%), Positives = 184/354 (51%), Gaps = 26/354 (7%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R Y   + VT+N+LI+G C +   ++A   +++M   GC P+  T +T+I G  +   + 
Sbjct: 248 RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQ 307

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L ++ V     F G + P+   Y SLI+GLC +  V++  +LF E + KGI  + +
Sbjct: 308 EATELLKDAV-----FKG-FVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV 361

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LC +  ++ A +++  M + G +P I TY  ++NG C +G ++ A  + +  
Sbjct: 362 VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDA 421

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             KG++PDVF+++ LI+GYCK   ++ A+ +   M   G            + P+T T N
Sbjct: 422 IMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYG------------IAPDTITYN 469

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             ++GLCK G V EV E F  + +  C      +N LI   C+    E AS++  K+S +
Sbjct: 470 SVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE 529

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            L  D V++N LI+   + G ++    L   +EE G +   DTFNTL+ +F  K
Sbjct: 530 GLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGK 583



 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 97/336 (28%), Positives = 154/336 (45%), Gaps = 47/336 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM-NLTLKLHQ 83
           V +NSL+KG C++G I  A Q++ +MA  GC P++ T + +I GL + GN+ + T+ ++ 
Sbjct: 361 VVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMND 420

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143
            ++ G       Y P+VF + +LIDG CK                           + KL
Sbjct: 421 AIMKG-------YLPDVFTFNTLIDGYCK---------------------------RLKL 446

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
             A +L+E M + G+ P   TY  +LNG C  GKVN     F  M  KG  P+  +Y++L
Sbjct: 447 DSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNIL 506

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I  +C++  +EEA  V  +M   G              P+  + N  I G C+NG +   
Sbjct: 507 IENFCRSNKMEEASKVIVKMSQEGLH------------PDAVSFNTLIYGFCRNGDLEGA 554

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             LF  LE        + FN+LI          +A ++F+++  K   AD   Y +LI  
Sbjct: 555 YLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDG 614

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             K   + +    L+ M + G    + TF  ++ S 
Sbjct: 615 SCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 650



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 98/359 (27%), Positives = 152/359 (42%), Gaps = 46/359 (12%)

Query: 31  IKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG-- 88
           I+ +   G +RDA    ++M  F C P     + ++  L      +   K++  M+    
Sbjct: 57  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116

Query: 89  ----------MGDFGGIYKPNV-------------FCYGSLIDGLCKDRLVDQTKDLFME 125
                     +  F    +P++               Y +++ GL         + LF +
Sbjct: 117 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 176

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M    +  N          LCK+  ++EA  LL  ++QRG++  +FTY   + G C  G+
Sbjct: 177 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 236

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +  A+ L D M R   +PDV +Y+ LI G CK    +EAM+  R M+  G          
Sbjct: 237 LPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG---------- 285

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
              +P+ FT N  IDG CK   V E  EL               + SLI G C  G  E 
Sbjct: 286 --CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVER 343

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A ELFN+   K +  D+V YN L+  L  +G I     ++  M E GC  D+ T+N ++
Sbjct: 344 ALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVI 402



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 33/173 (19%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+FN+LI GFC  G++  A  L +K+   G      T +TLI       NM++  K+  E
Sbjct: 536 VSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDE 595

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M++        ++ + + Y  LIDG CK   VD+    +M                  LV
Sbjct: 596 MLSKG------HRADSYTYRVLIDGSCKTANVDRA---YMH-----------------LV 629

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           E       M+++G  P + T+  ++N   +  +V  A+ +   M + G +P+V
Sbjct: 630 E-------MIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 675


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 109/354 (30%), Positives = 184/354 (51%), Gaps = 26/354 (7%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R Y   + VT+N+LI+G C +   ++A   +++M   GC P+  T +T+I G  +   + 
Sbjct: 249 RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQ 308

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L ++ V     F G + P+   Y SLI+GLC +  V++  +LF E + KGI  + +
Sbjct: 309 EATELLKDAV-----FKG-FVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV 362

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LC +  ++ A +++  M + G +P I TY  ++NG C +G ++ A  + +  
Sbjct: 363 VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDA 422

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             KG++PDVF+++ LI+GYCK   ++ A+ +   M   G            + P+T T N
Sbjct: 423 IMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYG------------IAPDTITYN 470

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             ++GLCK G V EV E F  + +  C      +N LI   C+    E AS++  K+S +
Sbjct: 471 SVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE 530

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            L  D V++N LI+   + G ++    L   +EE G +   DTFNTL+ +F  K
Sbjct: 531 GLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGK 584



 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 97/336 (28%), Positives = 154/336 (45%), Gaps = 47/336 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM-NLTLKLHQ 83
           V +NSL+KG C++G I  A Q++ +MA  GC P++ T + +I GL + GN+ + T+ ++ 
Sbjct: 362 VVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMND 421

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143
            ++ G       Y P+VF + +LIDG CK                           + KL
Sbjct: 422 AIMKG-------YLPDVFTFNTLIDGYCK---------------------------RLKL 447

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
             A +L+E M + G+ P   TY  +LNG C  GKVN     F  M  KG  P+  +Y++L
Sbjct: 448 DSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNIL 507

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I  +C++  +EEA  V  +M   G              P+  + N  I G C+NG +   
Sbjct: 508 IENFCRSNKMEEASKVIVKMSQEGLH------------PDAVSFNTLIYGFCRNGDLEGA 555

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             LF  LE        + FN+LI          +A ++F+++  K   AD   Y +LI  
Sbjct: 556 YLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDG 615

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             K   + +    L+ M + G    + TF  ++ S 
Sbjct: 616 SCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 651



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 98/359 (27%), Positives = 152/359 (42%), Gaps = 46/359 (12%)

Query: 31  IKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG-- 88
           I+ +   G +RDA    ++M  F C P     + ++  L      +   K++  M+    
Sbjct: 58  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 117

Query: 89  ----------MGDFGGIYKPNV-------------FCYGSLIDGLCKDRLVDQTKDLFME 125
                     +  F    +P++               Y +++ GL         + LF +
Sbjct: 118 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 177

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M    +  N          LCK+  ++EA  LL  ++QRG++  +FTY   + G C  G+
Sbjct: 178 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 237

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +  A+ L D M R   +PDV +Y+ LI G CK    +EAM+  R M+  G          
Sbjct: 238 LPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG---------- 286

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
              +P+ FT N  IDG CK   V E  EL               + SLI G C  G  E 
Sbjct: 287 --CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVER 344

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A ELFN+   K +  D+V YN L+  L  +G I     ++  M E GC  D+ T+N ++
Sbjct: 345 ALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVI 403



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 33/173 (19%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+FN+LI GFC  G++  A  L +K+   G      T +TLI       NM++  K+  E
Sbjct: 537 VSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDE 596

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M++        ++ + + Y  LIDG CK   VD+    +M                  LV
Sbjct: 597 MLSKG------HRADSYTYRVLIDGSCKTANVDRA---YMH-----------------LV 630

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           E       M+++G  P + T+  ++N   +  +V  A+ +   M + G +P+V
Sbjct: 631 E-------MIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 676


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 204/449 (45%), Gaps = 96/449 (21%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A  A G  I+  Y P + VTF++LI G C+EG + +A +LV +M   G +P + T + L+
Sbjct: 126 AFSAMGKIIKLGYEP-DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALV 184

Query: 67  TGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKP--NVFC--------------------- 102
            GL   G ++  + L   MV  G       Y P   V C                     
Sbjct: 185 NGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIK 244

Query: 103 -----YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------------------- 137
                Y  +IDGLCKD  +D   +LF EM+ KG  A+ ++                    
Sbjct: 245 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKL 304

Query: 138 -----------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
                                   K+ KL EA  L + M+QRG++P   TYT L++G+C 
Sbjct: 305 LRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------ 228
             +++ A  + D M  KG  P++ ++++LINGYCK   +++ + + R+M L G       
Sbjct: 365 ENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVT 424

Query: 229 -----------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                            K++F EM    V P+  +  I +DGLC NG   + +E+F  +E
Sbjct: 425 YNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            S  EL + I+N +I G C     + A +LF  L  K +  DV  YNI+I  L K+G + 
Sbjct: 485 KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLS 544

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFL 360
           + + L   MEE+G + +  T+N L+ + L
Sbjct: 545 EADLLFRKMEEDGHSPNGCTYNILIRAHL 573



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 162/343 (47%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++   ++   ++    DA  L ++M     RP +     L + + RT   +L L L ++
Sbjct: 38  VSYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQ 97

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     +  GI   N++    +I+  C+ R +        ++   G   +T+        
Sbjct: 98  M-----ELKGIAH-NLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLING 151

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC + ++ EA  L++ M++ G  P + T   L+NG CL GKV+ A+ L D M   GF P+
Sbjct: 152 LCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y  ++   CK+     AM + R+M          E K   +  +    +I IDGLCK
Sbjct: 212 EVTYGPVLKVMCKSGQTALAMELLRKM---------EERK---IKLDAVKYSIIIDGLCK 259

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G +     LF  +EI   +  + I+ +LIRG C  G ++  ++L   +  + +  DVVA
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ++ LI    KEG++++   L   M + G + D  T+ +L+  F
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 26/237 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI G+C    I D  +L +KM+  G   +  T +TLI G    G + +  +L QEM
Sbjct: 389 TFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM 448

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK------DKGINANTL--L 137
           V+         +P++  Y  L+DGLC +   ++  ++F +++      D GI    +  +
Sbjct: 449 VSRR------VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C  +K+ +A  L   +  +G+ P + TY  ++ G C  G ++ A  LF  M   G  P+ 
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNG 562

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +Y++LI  +    +  ++             K+  E+K C    +  T  + +D L
Sbjct: 563 CTYNILIRAHLGEGDATKS------------AKLIEEIKRCGFSVDASTVKMVVDML 607


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 198/435 (45%), Gaps = 97/435 (22%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           +   F + +++ Y P N +T  +LIKG C++G I  A     K+   G   N     TLI
Sbjct: 110 SFSVFANILKKGYEP-NAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLI 168

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G  +  L+L + +       G + +PNV  Y ++ID +CK +LV++  DL+ EM
Sbjct: 169 NGLCKVGQTSAALQLLRRVD------GKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 222

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             KGI+ + +                                            CK+ ++
Sbjct: 223 VSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRV 282

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA  +L +MM++G+ P + TY  L++GYCLV +VN A ++F++MA+ G   +V SY+++
Sbjct: 283 KEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIM 342

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           ING+CK   V+EAMN            +F EM   N++P+  T N  IDGLCK+G +   
Sbjct: 343 INGFCKIKKVDEAMN------------LFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYA 390

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           ++L   +           +NS++   CK    + A  L  K+  + +  D+  Y ILI  
Sbjct: 391 LKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDG 450

Query: 324 LGKEGQIK-----------------------------------KENYLLLSMEENGCALD 348
           L K G++K                                   K   LL  ME+NGC  +
Sbjct: 451 LCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPN 510

Query: 349 VDTFNTLMISFLQKE 363
             T+  +++S  +K+
Sbjct: 511 AKTYEIIILSLFEKD 525



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 169/340 (49%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN LI  F   G+   +  +   +   G  PN  T  TLI GL   G ++  L  H +
Sbjct: 92  VTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDK 151

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +V  +G     +  N  CYG+LI+GLCK         L   +  K +  N +        
Sbjct: 152 VV-ALG-----FHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDS 205

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +CK   + EA  L   M+ +G++P + TY+ L++G+C++GK+N AI LF+ M  +   PD
Sbjct: 206 MCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPD 265

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V+++S+L++G+CK   V+EA NV   M+  G K            P+  T    +DG C 
Sbjct: 266 VYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIK------------PDVVTYCSLMDGYCL 313

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              V +   +F T+        V+ +N +I G CK    + A  LF ++ CKN++ DVV 
Sbjct: 314 VKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVT 373

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN LI  L K G+I     L+  M + G   D  T+N+++
Sbjct: 374 YNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSIL 413



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 130/264 (49%), Gaps = 40/264 (15%)

Query: 4   VLGALM-AFGSFIRRCYRPLN-DV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           +LG L  A G F +     +N DV TF+ L+ GFC EG +++A  ++  M   G +P+V 
Sbjct: 243 ILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVV 302

Query: 61  TCDTLITGL---------------RRTGNMNLTLKLHQEMVNG------MGDFGGIYK-- 97
           T  +L+ G                   G +   ++ +  M+NG      + +   ++K  
Sbjct: 303 TYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEM 362

Query: 98  ------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKL 143
                 P+V  Y SLIDGLCK   +     L  EM D+G+  + +        LCK  ++
Sbjct: 363 HCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQV 422

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            +A  LL  M   G+ P ++TYT L++G C  G++  A  +F+ +  KG+   V++Y+V+
Sbjct: 423 DKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVM 482

Query: 204 INGYCKNFNVEEAMNVSREMILNG 227
           I G+C N   ++A+ +  +M  NG
Sbjct: 483 IQGFCDNDLFDKALALLSKMEDNG 506



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 12/200 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P IF +  +L     +     AI+L   M   G   D+ ++++LIN + +  +   + +V
Sbjct: 54  PPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSV 113

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
              ++  G++            P   T    I GLC  G + + +     +      L  
Sbjct: 114 FANILKKGYE------------PNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNK 161

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + +LI G CK G    A +L  ++  K +  +VV YN +I ++ K   + +   L   
Sbjct: 162 VCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSE 221

Query: 340 MEENGCALDVDTFNTLMISF 359
           M   G + DV T++ L+  F
Sbjct: 222 MVSKGISPDVVTYSALISGF 241


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 204/449 (45%), Gaps = 96/449 (21%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A  A G  I+  Y P + VTF++LI G C+EG + +A +LV +M   G +P + T + L+
Sbjct: 126 AFSAMGKIIKLGYEP-DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALV 184

Query: 67  TGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKP--NVFC--------------------- 102
            GL   G ++  + L   MV  G       Y P   V C                     
Sbjct: 185 NGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIK 244

Query: 103 -----YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------------------- 137
                Y  +IDGLCKD  +D   +LF EM+ KG  A+ ++                    
Sbjct: 245 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKL 304

Query: 138 -----------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
                                   K+ KL EA  L + M+QRG++P   TYT L++G+C 
Sbjct: 305 LRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------ 228
             +++ A  + D M  KG  P++ ++++LINGYCK   +++ + + R+M L G       
Sbjct: 365 ENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVT 424

Query: 229 -----------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                            K++F EM    V P+  +  I +DGLC NG   + +E+F  +E
Sbjct: 425 YNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            S  EL + I+N +I G C     + A +LF  L  K +  DV  YNI+I  L K+G + 
Sbjct: 485 KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLS 544

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFL 360
           + + L   MEE+G + +  T+N L+ + L
Sbjct: 545 EADLLFRKMEEDGHSPNGCTYNILIRAHL 573



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 162/343 (47%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++   ++   ++    DA  L ++M     RP +     L + + RT   +L L L ++
Sbjct: 38  VSYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQ 97

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     +  GI   N++    +I+  C+ R +        ++   G   +T+        
Sbjct: 98  M-----ELKGIAH-NLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLING 151

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC + ++ EA  L++ M++ G  P + T   L+NG CL GKV+ A+ L D M   GF P+
Sbjct: 152 LCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y  ++   CK+     AM + R+M          E K   +  +    +I IDGLCK
Sbjct: 212 EVTYGPVLKVMCKSGQTALAMELLRKM---------EERK---IKLDAVKYSIIIDGLCK 259

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G +     LF  +EI   +  + I+ +LIRG C  G ++  ++L   +  + +  DVVA
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ++ LI    KEG++++   L   M + G + D  T+ +L+  F
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 165/430 (38%), Gaps = 98/430 (22%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           + + +LI+GFC  G   D ++L++ M      P+V     LI    + G +    +LH+E
Sbjct: 283 IIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKE 342

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+       GI  P+   Y SLIDG CK+  +D+   +   M  KG   N          
Sbjct: 343 MIQR-----GI-SPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILING 396

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   + +   L   M  RG+     TY  L+ G+C +GK+ VA  LF  M  +   PD
Sbjct: 397 YCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPD 456

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFN 233
           + SY +L++G C N   E+A+ +  ++              I++G            +F 
Sbjct: 457 IVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFC 516

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL----------------------- 270
            + L  V P+  T NI I GLCK G + E   LF  +                       
Sbjct: 517 SLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEG 576

Query: 271 ----------EISNCELFVE------------------------IFNSLIRGCC---KFG 293
                     EI  C   V+                         F +L+R  C      
Sbjct: 577 DATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENAS 636

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           +++ A  LF  +       +VV YN +I  L     I +   +L  M E GC  +  T +
Sbjct: 637 VYD-APTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKS 695

Query: 354 TLMISFLQKE 363
           T +    +++
Sbjct: 696 TFISGLCKQD 705



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 137/333 (41%), Gaps = 53/333 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N+LI+GFC  G +  A +L ++M +   RP++ +   L+ GL   G     L++ 
Sbjct: 421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF 480

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +++     +       ++  Y  +I G+C    VD   DLF  +  KG+  +        
Sbjct: 481 EKIEKSKMEL------DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMI 534

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCKK  L EA+ L   M + G +P   TY  L+  +   G    +  L + + R GF 
Sbjct: 535 GGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFS 594

Query: 195 ----------------------PDVFSYSVLINGYC--KNFNVEEAMNVSREMILNGFKK 230
                                 PDVF+++ L+  +C  +N +V +A  + + M   G+K 
Sbjct: 595 VDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYK- 653

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
                      P   T N  I GL     + +V  +   +    C+      ++ I G C
Sbjct: 654 -----------PNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLC 702

Query: 291 KFGIFEIASELFNKLSCKNLVADVVA-YNILIH 322
           K  +   A  L  K+   N   DV     ILIH
Sbjct: 703 KQDLHGSAILLLRKMENDN--EDVTTKKKILIH 733



 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           Y+P N VT+N++IKG      I     ++ +M   GC+PN  T  T I+GL
Sbjct: 652 YKP-NVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGL 701


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 199/392 (50%), Gaps = 39/392 (9%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +++  A+      +   Y+P + VTF +L+ G        +A  LV++M   GC+P++ T
Sbjct: 159 NRISEAVALVDQMVEMGYQP-DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVT 217

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
              +I GL + G  +L L L  +M  G        + +V  Y ++IDGLCK + +D   D
Sbjct: 218 YGAVINGLCKRGEPDLALNLLNKMEKGK------IEADVVIYNTIIDGLCKYKHMDDAFD 271

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF +M+ KGI  +          LC   +  +A+RLL  M+++ +NP +  +  L++ + 
Sbjct: 272 LFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV 331

Query: 174 LVGKVNVAIALFDSMAR-KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------- 223
             GK+  A  L+D M + K   PDV +Y+ LI G+CK   VEE M V REM         
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 391

Query: 224 -----ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                +++GF         + +F +M    V P+  T NI +DGLC NG+V   + +F  
Sbjct: 392 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEY 451

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           ++  + +L +  + ++I   CK G  E   +LF  LS K +  +VV Y  ++    ++G 
Sbjct: 452 MQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGL 511

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            ++ + L + M+E+G   +  T+NTL+ + L+
Sbjct: 512 KEEADALFVEMKEDGPLPNSGTYNTLIRARLR 543



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 147/301 (48%), Gaps = 26/301 (8%)

Query: 76  NLTLKLHQEMV--NGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
           NL+ K+ Q++   + +G FG + K    P++  +  L+  + K    D    L  +M++ 
Sbjct: 45  NLSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNL 104

Query: 130 GINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           GI+ N           C++++L  A  +L  MM+ G  P I T   LLNG+C   +++ A
Sbjct: 105 GISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEA 164

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           +AL D M   G+ PD  +++ L++G  ++    EA+ +   M++ G +            
Sbjct: 165 VALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQ------------ 212

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+  T    I+GLCK G     + L   +E    E  V I+N++I G CK+   + A +L
Sbjct: 213 PDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDL 272

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           FNK+  K +  DV  YN LI  L   G+    + LL  M E     D+  FN L+ +F++
Sbjct: 273 FNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVK 332

Query: 362 K 362
           +
Sbjct: 333 E 333



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 14/191 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI GF    +  +A  + K+M + G  P++ T + L+ GL   GN+   L + 
Sbjct: 390 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVF 449

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M           K ++  Y ++I+ LCK   V+   DLF  +  KG+  N +      
Sbjct: 450 EYMQKR------DMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 503

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+K    EA+ L   M + G  P   TY  L+      G    +  L   M   GF 
Sbjct: 504 SGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFA 563

Query: 195 PDVFSYSVLIN 205
            D  ++ ++ N
Sbjct: 564 GDASTFGLVTN 574


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/408 (30%), Positives = 190/408 (46%), Gaps = 72/408 (17%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L  VTFN+LI G C  G    A +L   M   G +P+V T  T+I GL + G       L
Sbjct: 190 LTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGL 249

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------- 134
            ++M    G+ G   +P+V  Y ++ID LCKDR V++  D+F  MK KGI+ N       
Sbjct: 250 FRKM----GEAGC--QPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSL 303

Query: 135 ------------------------------------TLLCKKTKLVEANRLLELMMQRGL 158
                                                + CK+  + EA  +L+ M + G+
Sbjct: 304 IQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGV 363

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P + TY+ L+NGY L  +V  A  LFD M  KG  PDVFSY++LINGYCK   + EA  
Sbjct: 364 EPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQ 423

Query: 219 VSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLC 255
           +  EMI  G                          +F  M     +P+  T +I +DG C
Sbjct: 424 LFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFC 483

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G++ +   LF  ++ +  +  + ++N LI   CK    + A +LF++L  + L  +V 
Sbjct: 484 KQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQ 543

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            Y  +I+ L KEG + +      +MEE+GC  +  ++N ++  FLQ +
Sbjct: 544 IYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHK 591



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 117/216 (54%), Gaps = 13/216 (6%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L  +++ GL   I T+  L+NG C VGK   A+ LFD M  +G+ PDV +Y+ +ING C
Sbjct: 179 VLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLC 238

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K   + E +  +          +F +M      P+  T +  ID LCK+  V E +++F 
Sbjct: 239 K---IGETVAAA---------GLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFS 286

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            ++       +  +NSLI+G C F  +  AS + N++   N++ ++V +++LI+   KEG
Sbjct: 287 YMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEG 346

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF-LQKE 363
            + +   +L +M E G   +V T+++LM  + LQ E
Sbjct: 347 NVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAE 382



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 17/236 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           ++V+ A   F   I +  +P  DV ++N LI G+C    I +A QL  +M   G  P++ 
Sbjct: 381 AEVVEARKLFDVMITKGCKP--DVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIV 438

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           + +TLI GL + G +     L + M+   G+      P++  Y  L+DG CK   + +  
Sbjct: 439 SYNTLIDGLCQLGRLREAHDLFKNMLTN-GNL-----PDLCTYSILLDGFCKQGYLAKAF 492

Query: 121 DLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            LF  M+   +  N ++        CK   L EA +L   +  +GL P +  YT ++NG 
Sbjct: 493 RLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGL 552

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           C  G ++ A+  F +M   G  P+ FSY+V+I G+ ++ +   A+ +  EM   GF
Sbjct: 553 CKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGF 608


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 187/391 (47%), Gaps = 35/391 (8%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            SK   A       + R   P + VTFNS++ G C  G    A  L+  MA   CRP+  
Sbjct: 23  ASKTDKASEMLHEMVDRGVTP-DTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCC 81

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T +TLI+GL +  N++    L  E V+        + P+V  Y  L DGLCK   +D+  
Sbjct: 82  TYNTLISGLCKQQNVDRAKTLVDEFVSSG------FVPDVVTYSILADGLCKRGRIDEAF 135

Query: 121 DLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L  EM   G     +  NTL   LCK +K  +A  LLE ++  G  P + TYT +++G 
Sbjct: 136 ELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGL 195

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI-------- 224
           C  G+++ A+ + + M ++G  P V +Y+ L+ G C+   V+EA ++ +EM+        
Sbjct: 196 CKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADA 255

Query: 225 ------LNGFKKIFNEMKLCNVV------PETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                 +NG+ K     +   VV      P     N  +DG CK G + E+  +F  +  
Sbjct: 256 LAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMAC 315

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
             C   ++ +N ++ G CK G  + A      +     V DVV+YNI+I  L K  + K+
Sbjct: 316 RGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKE 375

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              +L  M + G   D  T+NTLM  F ++E
Sbjct: 376 ARQVLDQMIQAGIPPDAVTYNTLMAQFCKEE 406



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 165/343 (48%), Gaps = 30/343 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI G C       A +L++ + + G  P+V T   ++ GL + G ++  LK  
Sbjct: 149 NLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALK-- 206

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             MV GM   G    P+V  Y +L++GLC+   VD+   +F EM  K   A+ L      
Sbjct: 207 --MVEGMLKRG--CTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLV 262

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK ++  EA ++++ +  RG  P I  Y  L++GYC  G+++    +F+ MA +G +
Sbjct: 263 NGYCKSSRTKEAQKVVDGI--RG-TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCV 319

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P++ +Y+++++G CK+  V+EA                  M     VP+  + NI IDGL
Sbjct: 320 PNIKTYNIVMDGLCKHGKVDEAF------------PFLESMHSAGCVPDVVSYNIIIDGL 367

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K     E  ++   +  +        +N+L+   CK   F+ A  +   +    +  D 
Sbjct: 368 FKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDN 427

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDV-DTFNTLM 356
           V YN LI  L +  ++     L+  M  NGC +    T+NT++
Sbjct: 428 VTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTII 470



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 118/259 (45%), Gaps = 39/259 (15%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRG 157
           P+VF Y  LIDGLCK    D+                           A+ +L  M+ RG
Sbjct: 8   PDVFTYNILIDGLCKASKTDK---------------------------ASEMLHEMVDRG 40

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P   T+  +++G C  GK   A +L   MA +   P   +Y+ LI+G CK  NV+ A 
Sbjct: 41  VTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAK 100

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            +  E + +GF            VP+  T +I  DGLCK G + E  EL   +  + C  
Sbjct: 101 TLVDEFVSSGF------------VPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTP 148

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            +  +N+LI G CK    E A EL   L     V DVV Y I++  L KEG++ K   ++
Sbjct: 149 NLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMV 208

Query: 338 LSMEENGCALDVDTFNTLM 356
             M + GC   V T+  LM
Sbjct: 209 EGMLKRGCTPSVITYTALM 227



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 145/328 (44%), Gaps = 46/328 (14%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+N+L+  FC E    DA  ++K M   G  P+  T +TLI+GL +T  +    +
Sbjct: 389 PPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYE 448

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           L  EM+       G        Y ++ID LCK+  + Q   L   M   G+ ANT+    
Sbjct: 449 LMHEMLRN-----GCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTV---- 499

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                                  TY   ++  C  G+++ A +L   M     + D  SY
Sbjct: 500 -----------------------TYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSY 533

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + +I G CK   ++ A  ++REM+          +K   +   TF  N+ ID   K   +
Sbjct: 534 TTVIIGLCKAEQLDRASKLAREMV---------AVKGLCITSHTF--NLLIDAFTKTKRL 582

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            E + L   +    C   V  +N +I   CK    + A ELF++++ + +VA  V+Y +L
Sbjct: 583 DEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVL 642

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALD 348
           I+ L  +G+ K+   +L  M  + C +D
Sbjct: 643 IYGLCGQGRGKEALQVLEEMASSDCEID 670



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 166/346 (47%), Gaps = 32/346 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P  DV +N+L+ G+C EG + +   + + MA  GC PN+ T + ++ GL + G ++    
Sbjct: 285 PYIDV-YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 343

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NT 135
             + M +     G +  P+V  Y  +IDGL K     + + +  +M   GI       NT
Sbjct: 344 FLESMHSA----GCV--PDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNT 397

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+   CK+ +  +A  +L+ M++ G++P   TY  L++G     ++  A  L   M R G
Sbjct: 398 LMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG 457

Query: 193 -FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
             +    +Y+ +I+  CK   +++A+ +   M  +G            V   T T NIFI
Sbjct: 458 CVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHG------------VEANTVTYNIFI 505

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL-SCKNL 310
           D LCK G + E   L   ++    E+    + ++I G CK    + AS+L  ++ + K L
Sbjct: 506 DRLCKEGRLDEASSLLSEMDTLRDEVS---YTTVIIGLCKAEQLDRASKLAREMVAVKGL 562

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                 +N+LI A  K  ++ +   LL  M + GC+  V T+N ++
Sbjct: 563 CITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVI 608



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N LI G CK    + ASE+ +++  + +  D V +N ++  L K G+ ++ + LL  M 
Sbjct: 13  YNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMA 72

Query: 342 ENGCALDVDTFNTLMISFLQKE 363
           E  C     T+NTL+    +++
Sbjct: 73  ERNCRPSCCTYNTLISGLCKQQ 94


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 130/417 (31%), Positives = 196/417 (47%), Gaps = 75/417 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  +G   +   +P + +TF +LI G C EG I+ A +L  +M   G  P+V + +TLI
Sbjct: 147 AVSVWGKMFKLGIQP-DVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLI 205

Query: 67  TGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            GL  +GN N+ + + ++M  NG        KPNV  Y ++ID LCKDRLV+   D   E
Sbjct: 206 NGLCNSGNTNMAVHVFKKMEQNGC-------KPNVVTYNTIIDSLCKDRLVNDAMDFLSE 258

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQ---------------------- 155
           M  +GI  + +        LC   +L EA RL + M Q                      
Sbjct: 259 MVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRL 318

Query: 156 -------------RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                        +G+ P + TYT +L+G C +G++N AI LF  M +KG  PDV +Y+ 
Sbjct: 319 VNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNT 378

Query: 203 LINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMKLCN 239
           +I+  CK+  V +AM    EM              IL+GF          ++F EM   N
Sbjct: 379 IIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRN 438

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           V+P T T +I +DGLC+ G V E   +F T+     E  +  +N+L+ G C       A 
Sbjct: 439 VMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEAR 498

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++F  +  K    D+ +YNILI+      ++ K   LL  M       +  T+NT+M
Sbjct: 499 KVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIM 555



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 180/351 (51%), Gaps = 27/351 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+ +++ G C  G + +A +L KKM   GC+P+V   +T+I  L +   +N  ++
Sbjct: 335 PPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAME 394

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
              EMV+      GI  PN   Y +++ G C    +D+   LF EM  + +  NTL    
Sbjct: 395 FLSEMVDR-----GI-PPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSI 448

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC++  + EA  + E M ++G+ P I+TY  L+NGYCL  K+N A  +F+ M  KG
Sbjct: 449 LVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKG 508

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+ SY++LINGYC +  +++A            K +  +M +  + P T T N  + 
Sbjct: 509 CAPDLHSYNILINGYCNSRRMDKA------------KALLTQMSVKKLTPNTVTYNTIMK 556

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLC  G +L+  ELF  +  S     +  ++ L+ G CK G  + A +LF  +  K L  
Sbjct: 557 GLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEP 616

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           D++ Y ILI  +   G+++    L   +  +G      T+N +MI  L KE
Sbjct: 617 DIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYN-VMIKGLLKE 666



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 118/246 (47%), Gaps = 23/246 (9%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+   +  A  +   M + G+ P + T+T L+NG C  GK+ VA+ L++ M R G  PD
Sbjct: 138 LCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPD 197

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFN 233
           V SY+ LING C + N   A++V ++M  NG K                          +
Sbjct: 198 VISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLS 257

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM    + P+  T N  + GLC  G + E   LF  +E + C+  V  +N +I    K  
Sbjct: 258 EMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDR 317

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           +   A++  +++  + +  DVV Y  ++H L   GQ+ +   L   ME+ GC  DV  +N
Sbjct: 318 LVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYN 377

Query: 354 TLMISF 359
           T++ S 
Sbjct: 378 TIIDSL 383



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 150/352 (42%), Gaps = 37/352 (10%)

Query: 39  NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP 98
           ++ DA     +MA    RP++      +  + +    +  + L  +M     D  G+   
Sbjct: 73  SVDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQM-----DLFGVTH- 126

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLL 150
            V+    LI+ LC+   VD    ++ +M   GI  + +        +C + K+  A  L 
Sbjct: 127 TVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELY 186

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             M++ G  P + +Y  L+NG C  G  N+A+ +F  M + G  P+V +Y+ +I+  CK+
Sbjct: 187 NEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKD 246

Query: 211 FNVEEAMNVSREMI-----------------------LNGFKKIFNEMKLCNVVPETFTC 247
             V +AM+   EM+                       LN   ++F  M+     P+  T 
Sbjct: 247 RLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTY 306

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           NI ID L K+  V +  +    +        V  + +++ G C  G    A  LF K+  
Sbjct: 307 NIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQ 366

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           K    DVVAYN +I +L K+  +      L  M + G   +  T++T++  F
Sbjct: 367 KGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGF 418



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 106/205 (51%), Gaps = 12/205 (5%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+   +++   L+N  C +  V+ A++++  M + G  PDV +++ LING C    ++ A
Sbjct: 123 GVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVA 182

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           + +  EM+ +G +            P+  + N  I+GLC +G+    + +F  +E + C+
Sbjct: 183 VELYNEMVRSGHE------------PDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCK 230

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             V  +N++I   CK  +   A +  +++  + +  D + YN ++H L   GQ+ +   L
Sbjct: 231 PNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRL 290

Query: 337 LLSMEENGCALDVDTFNTLMISFLQ 361
              ME+NGC  DV T+N ++ S  +
Sbjct: 291 FKRMEQNGCKPDVVTYNIIIDSLYK 315



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 110/259 (42%), Gaps = 50/259 (19%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   + R   P N +TF+ L+ G C EG + +A  + + M   G  PN+ T + L+
Sbjct: 427 ATQLFKEMVGRNVMP-NTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALM 485

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G      MN   K+ + MV      G    P++  Y  LI+G C  R +D+ K L  +M
Sbjct: 486 NGYCLRCKMNEARKVFEIMV------GKGCAPDLHSYNILINGYCNSRRMDKAKALLTQM 539

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             K +  NT+        LC   +L++A  L + M   G+ P + TY+ LLNG C  G +
Sbjct: 540 SVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHL 599

Query: 179 NVAIALFDSMARKGFMPDVF-----------------------------------SYSVL 203
           + A+ LF SM  K   PD+                                    +Y+V+
Sbjct: 600 DEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVM 659

Query: 204 INGYCKNFNVEEAMNVSRE 222
           I G  K    +EA  + R+
Sbjct: 660 IKGLLKEGLSDEAYELFRK 678



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 58/141 (41%)

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A N S  + ++     F  M   N  P       F+  + K      V+ L   +++   
Sbjct: 65  ASNSSNTISVDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGV 124

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              V   N LI   C+    + A  ++ K+    +  DV+ +  LI+ +  EG+IK    
Sbjct: 125 THTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVE 184

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           L   M  +G   DV ++NTL+
Sbjct: 185 LYNEMVRSGHEPDVISYNTLI 205


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 184/345 (53%), Gaps = 26/345 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P ++VT N L+ G+C EG I +    + +M+  G RP+  T ++L+ GL R G++   L 
Sbjct: 278 PSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHAL- 336

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
              E+++ M   G  + P++F Y SLI GLCK   V++  ++  +M  +  + NT+    
Sbjct: 337 ---EILDVMLQEG--FDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNT 391

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK+ ++ EA  L  ++  +G+ P + T+  L+ G CL     +A+ LF+ M  KG
Sbjct: 392 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKG 451

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD F+Y++LI+  C    +EEA+++ +EM  +G  +        NVV    T N  ID
Sbjct: 452 CHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSR--------NVV----TYNTLID 499

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CKN  + E  E+F  +E+      V  +N+LI G CK    E A++L +++  + L  
Sbjct: 500 GFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKP 559

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           D   YN L+    + G IKK   ++ +M  NGC  D  T+ TL++
Sbjct: 560 DKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLIL 604



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 181/376 (48%), Gaps = 38/376 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           + R  +P +  TFN LIK  C    IR A  ++++M ++G  P+  T  TL+ G    GN
Sbjct: 203 VSRGIKP-DVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGN 261

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           MN  L++ ++MV       G    NV     L+ G CK+  +++      EM ++G   +
Sbjct: 262 MNGALRIREQMVAA-----GCPSSNV-TVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPD 315

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                     LC+   +  A  +L++M+Q G +P IFTY  L+ G C +G+V  A+ + +
Sbjct: 316 RFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILN 375

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------------------ 228
            M  + F P+  +Y+ LI+  CK   VEEA  ++R +   G                   
Sbjct: 376 QMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTN 435

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                 ++F EMK     P+ FT N+ ID LC  G + E + L   +E S C   V  +N
Sbjct: 436 NHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYN 495

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LI G CK    E A E+F+++  + +  +VV YN LI  L K  ++++   L+  M   
Sbjct: 496 TLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLME 555

Query: 344 GCALDVDTFNTLMISF 359
           G   D  T+N+L+  F
Sbjct: 556 GLKPDKFTYNSLLTYF 571



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 129/269 (47%), Gaps = 38/269 (14%)

Query: 22  LNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           L DV TFNSLI+G C+  N R A +L ++M T GC P+  T + LI  L   G +   L 
Sbjct: 418 LPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALS 477

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L +EM     +  G  + NV  Y +LIDG CK++ +++ +++F EM+ +GI+ N +    
Sbjct: 478 LLKEM-----ESSGCSR-NVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNT 531

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  ++ EA +L++ M+  GL P  FTY  LL  +C  G +  A  +  +M   G
Sbjct: 532 LIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNG 591

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------FKKIFNEMKLCNVV 241
             PD  +Y  LI G  K   VE A  + R + L G            K +F E +    V
Sbjct: 592 CEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAV 651

Query: 242 ------------PETFTCNIFIDGLCKNG 258
                       P+  T  +   GLC  G
Sbjct: 652 RLFREMMEKGDPPDAVTYKVVFRGLCSGG 680



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 108/255 (42%), Gaps = 50/255 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++ T+N LI   C  G + +A  L+K+M + GC  NV T +TLI G  +   +    ++ 
Sbjct: 455 DEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIF 514

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
            EM     +  GI + NV  Y +LIDGLCK+R V++   L  +M  +G+  +        
Sbjct: 515 DEM-----ELQGISR-NVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLL 568

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA------------- 181
           T  C+   + +A  +++ M   G  P   TY  L+ G    G+V +A             
Sbjct: 569 TYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMV 628

Query: 182 ----------------------IALFDSMARKGFMPDVFSYSVLINGYCKNFN-VEEAMN 218
                                 + LF  M  KG  PD  +Y V+  G C     + EA++
Sbjct: 629 LAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVD 688

Query: 219 VSREMILNGFKKIFN 233
              EM   GF   F+
Sbjct: 689 FLVEMTDKGFLPDFS 703



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 144/367 (39%), Gaps = 72/367 (19%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           P   T   L   LRR  + +  L L  +  +   +F     P+   Y  ++  L KD   
Sbjct: 67  PQNFTPKQLRDALRRQSDEDSILDL-LDWASKQPNF----VPSSVIYEEVLRKLGKDGSF 121

Query: 117 DQTKDLFMEMKDKG--INANTLL------CKKTKLVEANRLLELMMQR-GLNPVIFTYTP 167
              + +  EMK  G  I   T L       K     EA  ++++M +  GL    FTY  
Sbjct: 122 GSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNF 181

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM---------- 217
           LLN      K+ +   +   M  +G  PDV ++++LI   C+   +  A+          
Sbjct: 182 LLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYG 241

Query: 218 ---------------------------------------NVSREMILNGFKK-------- 230
                                                  NV+  ++++G+ K        
Sbjct: 242 LSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVL 301

Query: 231 -IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
              +EM      P+ FT N  ++GLC+ GHV   +E+   +     +  +  +NSLI G 
Sbjct: 302 SFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGL 361

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G  E A E+ N++  ++   + V YN LI  L KE Q+++   L   +   G   DV
Sbjct: 362 CKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 421

Query: 350 DTFNTLM 356
            TFN+L+
Sbjct: 422 CTFNSLI 428



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 17/196 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI G C    + +A+QL+ +M   G +P+  T ++L+T   R G++     + 
Sbjct: 525 NVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIV 584

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL 136
           Q M  NG        +P+   YG+LI GL K   V+    L   ++ KG+       N +
Sbjct: 585 QTMTSNGC-------EPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPV 637

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG-KVNVAIALFDSMARKG 192
              L ++ +  EA RL   MM++G  P   TY  +  G C  G  +  A+     M  KG
Sbjct: 638 IKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKG 697

Query: 193 FMPDVFSYSVLINGYC 208
           F+PD  S+ +L  G C
Sbjct: 698 FLPDFSSFLMLAEGLC 713


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 194/396 (48%), Gaps = 49/396 (12%)

Query: 2   SKVLGALMA-FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           S  LGA M  F   ++R + P + VT+N+LI   C  G++ +A +L   M++ GC PNV 
Sbjct: 94  SNELGAGMELFEELVKRGHHP-DVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVV 152

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   LI GL + G ++   +L QEM     D      PN+  Y S +DGLCK  +  +  
Sbjct: 153 TYSVLINGLCKVGRIDEARELIQEMTRKSCDV----LPNIITYNSFLDGLCKQSMTAEAC 208

Query: 121 DLFMEMKDKG--INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
           +L   ++D    ++ +T+        LCK  +  EA    + M+  G  P + TY  L+N
Sbjct: 209 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVN 266

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------- 223
           G C   K+  A A+ +SM  KG  PDV +YSVL++ +CK   V+EA+ +   M       
Sbjct: 267 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 326

Query: 224 -------ILNGFKK-------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
                  I++G  K             ++N M    +VP+  T NI I G CK G+  + 
Sbjct: 327 NVVTFNSIIDGLCKSDRSGEAFQIALQVYNRM----LVPDKVTFNILIAGACKAGNFEQA 382

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             LF  +   N +  V  F +LI G CK G  E A ++ + +    +  +VV YN+L+H 
Sbjct: 383 SALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHG 442

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L K G+I++    L  M  +GC  +  T+ +L+ + 
Sbjct: 443 LCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYAL 478



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 156/350 (44%), Gaps = 35/350 (10%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P N VT+N+L+ G C    +  A  +++ M   G  P+V T   L+    +   ++  
Sbjct: 254 YVP-NVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 312

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF---------MEMKDK 129
           L    E+++GM   G    PNV  + S+IDGLCK    D++ + F         M + DK
Sbjct: 313 L----ELLHGMASRG--CTPNVVTFNSIIDGLCKS---DRSGEAFQIALQVYNRMLVPDK 363

Query: 130 GINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +  N L+   CK     +A+ L E M+ + + P + T+  L++G C  G+V  A  + D
Sbjct: 364 -VTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILD 422

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M   G  P+V +Y+VL++G CK+  +EE      EM+ +G             VPE+ T
Sbjct: 423 LMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSG------------CVPESMT 470

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
               +  LC+     + ++L   L+    +     +N L+ G  K G  E A  +  ++ 
Sbjct: 471 YGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMV 530

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            K    D   +      L + G +     LL  +   G   D  T ++++
Sbjct: 531 GKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 580



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 135/268 (50%), Gaps = 23/268 (8%)

Query: 103 YGSLIDGLCKDRLVDQTKDLFM-EMKDKGINA-----NTL---LCKKTKLVEANRLLELM 153
           Y  ++  LC+     +  ++F  EM   G+       NT+   LCK  +L     L E +
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           ++RG +P + TY  L++  C  G +  A  L   M+ +G +P+V +YSVLING CK   +
Sbjct: 108 VKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRI 167

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           +EA  + +EM            K C+V+P   T N F+DGLCK     E  EL  +L   
Sbjct: 168 DEARELIQEMT----------RKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDG 217

Query: 274 NCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
           +  +  +   F++LI G CK G  + A    + +     V +VV YN L++ L K  +++
Sbjct: 218 SLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKME 275

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
           + + ++ SM + G   DV T++ L+ +F
Sbjct: 276 RAHAMIESMVDKGVTPDVITYSVLVDAF 303



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 112/238 (47%), Gaps = 26/238 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VTFN LI G C  GN   AS L ++M     +P+V T   LI GL + G     ++  
Sbjct: 362 DKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQ----VEAA 417

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +++++ MG+ G    PNV  Y  L+ GLCK   +++  +   EM   G    ++      
Sbjct: 418 RDILDLMGNLG--VPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLV 475

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+ ++  +A +L+  +   G +P   TY  L++G    GK   AI + + M  KG  
Sbjct: 476 YALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQ 535

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           PD F+++    G  ++ N+   M + R ++  G             +P+  TC+  +D
Sbjct: 536 PDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGM------------LPDATTCSSILD 581



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 14/158 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+N L+ G C  G I +  + +++M + GC P   T  +L+  L R    +  L+
Sbjct: 430 PPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQ 489

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L    V+ +  FG  + P+   Y  L+DGL K    +Q   +  EM  KG   ++     
Sbjct: 490 L----VSKLKSFG--WDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAA 543

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
               L +   L     LL +++ +G+ P   T + +L+
Sbjct: 544 CFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 184/371 (49%), Gaps = 44/371 (11%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           LG +M  G      + P + VTF SL+ GFC    I DA  L  ++   G RPNV T  T
Sbjct: 140 LGKMMKLG------FEP-DLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTT 192

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           LI  L +  ++N  +    E+ N MGD G   +PNV  Y SL+ GLC+         L  
Sbjct: 193 LIHCLCKNRHLNHAV----EIFNQMGDNG--IRPNVVTYNSLVSGLCEIGRWSDAAWLLR 246

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           +M  +GI  N +          K  K++EA  L ++M+Q  + P +FTYT L+NG C  G
Sbjct: 247 DMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYG 306

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------------- 223
           +++ A  +F  M   G+ P+  +Y+ LI+G+CK+  VE+   +  EM             
Sbjct: 307 RLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYT 366

Query: 224 -ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
            ++ G+         +++FN+M      P+  T N+ +DGLC NG+V + + +F  +   
Sbjct: 367 VLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKR 426

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             ++ +  +  +I+G CK G  E A +LF  L  K +  +V+ Y  +I    + G I + 
Sbjct: 427 EMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEA 486

Query: 334 NYLLLSMEENG 344
           + L   M+E+G
Sbjct: 487 DALFKKMKEDG 497



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 20/274 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---CKKTKLVEANRL 149
           P++  +  L+  + K +  D    LF +M+  GI+      N ++   C+ ++   A+  
Sbjct: 80  PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCF 139

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  MM+ G  P + T+T LL+G+C   ++  A+ALFD +   GF P+V +Y+ LI+  CK
Sbjct: 140 LGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCK 199

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           N ++  A+            +IFN+M    + P   T N  + GLC+ G   +   L   
Sbjct: 200 NRHLNHAV------------EIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRD 247

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     +  V  F +LI    K G    A EL+  +   ++  DV  Y  LI+ L   G+
Sbjct: 248 MMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGR 307

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + +   +   ME NG   +  T+ TL+  F + +
Sbjct: 308 LDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSK 341



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 121/281 (43%), Gaps = 73/281 (25%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N VT+NSL+ G C  G   DA+ L++ M   G +PNV T   LI    + G +    
Sbjct: 219 RP-NVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAK 277

Query: 80  KLHQEMV---------------NGMGDFGGI--------------YKPNVFCYGSLIDGL 110
           +L++ M+               NG+  +G +              Y PN   Y +LI G 
Sbjct: 278 ELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGF 337

Query: 111 CKDRLVDQTKDLFMEMKDKGINANTL---------------------------------- 136
           CK + V+    +F EM  KG+ ANT+                                  
Sbjct: 338 CKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDI 397

Query: 137 ---------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                    LC    + +A  + + M +R ++  I TYT ++ G C VGKV  A  LF S
Sbjct: 398 RTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCS 457

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           +  KG  P+V +Y+ +I+G+C+   + EA  + ++M  +GF
Sbjct: 458 LFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGF 498



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 15/186 (8%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P N+VT+ +LI GFC    + D +++  +M+  G   N  T   LI G    G  ++ 
Sbjct: 323 YYP-NEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVA 381

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
               QE+ N MG       P++  Y  L+DGLC +  V++   +F  M+ + ++ N +  
Sbjct: 382 ----QEVFNQMGSRRA--PPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTY 435

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 +CK  K+ +A  L   +  +G+ P + TYT +++G+C  G ++ A ALF  M  
Sbjct: 436 TIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKE 495

Query: 191 KGFMPD 196
            GF+P+
Sbjct: 496 DGFLPN 501



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 102/247 (41%), Gaps = 47/247 (19%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA--------------- 189
           EA  L   M+     P I  +T LL+    + + +V I+LF+ M                
Sbjct: 65  EALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVM 124

Query: 190 --------------------RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
                               + GF PD+ +++ L++G+C    +E+A+ +  +++  GF+
Sbjct: 125 NCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFR 184

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                       P   T    I  LCKN H+   +E+F  +  +     V  +NSL+ G 
Sbjct: 185 ------------PNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGL 232

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C+ G +  A+ L   +  + +  +V+ +  LI A  K G+I +   L   M +     DV
Sbjct: 233 CEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDV 292

Query: 350 DTFNTLM 356
            T+  L+
Sbjct: 293 FTYTALI 299


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 195/397 (49%), Gaps = 48/397 (12%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ I++ +R +  +TF  L+KG C +    DA  +V ++M   GC PNV + + L+ G
Sbjct: 109 ALGNVIKKGFR-VEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNG 167

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +   D GG   P+V  Y ++I+G  K+   D+    + EM D
Sbjct: 168 LCDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLD 224

Query: 129 KGINANTLL--------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           +GI  + +                     CK+ +++E+ +L +LM++ G+ P I TY+ L
Sbjct: 225 RGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 284

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM----- 223
           ++GYCL GK++ A+ L   M   G  P+  +YS LINGYCK   +E+A+ + +EM     
Sbjct: 285 IDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV 344

Query: 224 ---------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                    IL G          K+++  +       E  T NI + GLCKN    + ++
Sbjct: 345 SPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQ 404

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +F  L + + +L    FN +I    K G  + A +LF   S   LV +   Y ++   + 
Sbjct: 405 MFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENII 464

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +G +++ + L LSME+NGC +D    N ++   LQ+
Sbjct: 465 GQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQR 501



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 26/217 (11%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A   ++ +KGF  +  +++ L+ G C +    +AM
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN--- 274
           ++           +   M     +P  F+ N  ++GLC      E +EL   +       
Sbjct: 143 DI-----------VLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGG 191

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL---------- 324
               V  + ++I G  K G  + A   ++++  + ++ DVV Y+ +I AL          
Sbjct: 192 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPW 251

Query: 325 --GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              KEG++ +   L   M   G   D+ T++TL+  +
Sbjct: 252 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 288


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 195/397 (49%), Gaps = 48/397 (12%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ I++ +R +  +TF  L+KG C +    DA  +V ++M   GC PNV + + L+ G
Sbjct: 109 ALGNVIKKGFR-VEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNG 167

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +   D GG   P+V  Y ++I+G  K+   D+    + EM D
Sbjct: 168 LCDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLD 224

Query: 129 KGINANTLL--------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           +GI  + +                     CK+ +++E+ +L +LM++ G+ P I TY+ L
Sbjct: 225 RGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 284

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM----- 223
           ++GYCL GK++ A+ L   M   G  P+  +YS LINGYCK   +E+A+ + +EM     
Sbjct: 285 IDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV 344

Query: 224 ---------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                    IL G          K+++  +       E  T NI + GLCKN    + ++
Sbjct: 345 SPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQ 404

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +F  L + + +L    FN +I    K G  + A +LF   S   LV +   Y ++   + 
Sbjct: 405 MFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENII 464

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +G +++ + L LSME+NGC +D    N ++   LQ+
Sbjct: 465 GQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQR 501



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 114/263 (43%), Gaps = 39/263 (14%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL-FDSMARKGFMPD 196
           C+  +L      L  ++++G      T+TPLL G C   + + A+ +    M   G +P+
Sbjct: 98  CRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPN 157

Query: 197 VFSYSVLINGYCKNFNVEEAMN-----------------VSREMILNGFKK--------- 230
           VFSY+ L+NG C     +EA+                  VS   ++NGF K         
Sbjct: 158 VFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYS 217

Query: 231 IFNEMKLCNVVPETFTCNIFIDGL------------CKNGHVLEVMELFPTLEISNCELF 278
            ++EM    ++P+  T +  I  L            CK G V+E  +LF  +     +  
Sbjct: 218 TYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPD 277

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +++LI G C  G  + A +L + +    L  + V Y+ LI+   K  +++    L  
Sbjct: 278 IITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFK 337

Query: 339 SMEENGCALDVDTFNTLMISFLQ 361
            ME +G + D+ T+N ++    Q
Sbjct: 338 EMESSGVSPDIITYNIILQGLFQ 360



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 26/217 (11%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A   ++ +KGF  +  +++ L+ G C +    +AM
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN--- 274
           ++           +   M     +P  F+ N  ++GLC      E +EL   +       
Sbjct: 143 DI-----------VLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGG 191

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL---------- 324
               V  + ++I G  K G  + A   ++++  + ++ DVV Y+ +I AL          
Sbjct: 192 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPW 251

Query: 325 --GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              KEG++ +   L   M   G   D+ T++TL+  +
Sbjct: 252 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 288


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 197/427 (46%), Gaps = 73/427 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V+ A       ++  Y+P N +T N+L+KG C+EG +++A +   K+   G R +  + 
Sbjct: 108 QVVLAFSGVSKILKLGYQP-NTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISY 166

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI G+ + G     ++L + +           +PNV  Y  +ID LCKD LVD+  DL
Sbjct: 167 GILINGVCKIGETRAAIRLLRRIERWS------IRPNVVIYSMIIDRLCKDTLVDEAYDL 220

Query: 123 FMEMKDKGINANTL-------------------------------------------LCK 139
           + EM  KGI+ + +                                           LCK
Sbjct: 221 YTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCK 280

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           + K+ EA  +L +M++  +N  +  Y+ L++GYCLV +VN A  +F +M + G  PDV  
Sbjct: 281 EGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHC 340

Query: 200 YSVLINGYCKNFNVEEAMNVSREMI-----------------------LNGFKKIFNEMK 236
           YS++ING CK   V+EA+N+  E+                        ++    +F+EM 
Sbjct: 341 YSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEML 400

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
                P+  T N  ID LCKNGH+   + LF  ++       V  F  L+ G CK G  +
Sbjct: 401 DRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLK 460

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A E F  L  K    +V  Y ++I+ L KEG + +   L   ME+NGC  D  TF  ++
Sbjct: 461 NALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMI 520

Query: 357 ISFLQKE 363
            +F  K+
Sbjct: 521 RAFFDKD 527



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 152/328 (46%), Gaps = 26/328 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT++ L+ GFC+ G +  A  L+ +M      P++ T   L+  L + G +     +   
Sbjct: 234 VTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAV 293

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV    +       +V  Y +L+DG C    V+  K +F  M   G+  +          
Sbjct: 294 MVKACVNL------DVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMING 347

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  ++ EA  L E + Q+ + P   TYT L++  C  G+++    LFD M  +G  PD
Sbjct: 348 LCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPD 407

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ LI+  CKN +++ A+             +FN+MK   + P  +T  I +DGLCK
Sbjct: 408 VITYNNLIDALCKNGHLDRAI------------ALFNKMKDQAIRPNVYTFTILLDGLCK 455

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +   +E F  L      L V  +  +I G CK G+ + A  L +++     ++D V 
Sbjct: 456 VGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVT 515

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
           + I+I A   + +  K   L+  M   G
Sbjct: 516 FEIMIRAFFDKDENDKAEKLVREMIARG 543



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+ F +  ++  L   +       L+ +M+   +  +           C   ++V A   
Sbjct: 56  PHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSG 115

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           +  +++ G  P   T   L+ G CL GKV  A+   D +  +GF     SY +LING CK
Sbjct: 116 VSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCK 175

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                 A+            ++   ++  ++ P     ++ ID LCK+  V E  +L+  
Sbjct: 176 IGETRAAI------------RLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTE 223

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +        V  ++ L+ G C  G    A +L N++  +N+  D+  Y IL+ AL KEG+
Sbjct: 224 MVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGK 283

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           +K+   +L  M +    LDV  ++TLM
Sbjct: 284 VKEAENVLAVMVKACVNLDVVVYSTLM 310



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 12/207 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M      P  F +  +L     V +   AI+L+  M      PD F+ +++IN +C    
Sbjct: 49  MFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQ 108

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           V  A +   +++  G++            P T T N  + GLC  G V E +     +  
Sbjct: 109 VVLAFSGVSKILKLGYQ------------PNTITLNTLMKGLCLEGKVKEALRFHDKVLA 156

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
               L    +  LI G CK G    A  L  ++   ++  +VV Y+++I  L K+  + +
Sbjct: 157 QGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDE 216

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
              L   M   G + DV T++ L+  F
Sbjct: 217 AYDLYTEMVGKGISPDVVTYSILVSGF 243


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/422 (30%), Positives = 194/422 (45%), Gaps = 70/422 (16%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            VLGA+   G        P   VTF +LI G C EGN+  A++    +   G   N  T 
Sbjct: 63  SVLGAMFKIG------VEP-TVVTFATLINGLCAEGNVGAAARFADSLEDMGYESNSYTH 115

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNG---------------------------MGDFGGI 95
            T+I GL + G+    +  + E + G                           +  F G+
Sbjct: 116 GTIINGLCKVGDTAGAIS-YLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCLALNFFSGM 174

Query: 96  ----YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKL 143
                +P++  Y SLI GLC     ++   L   M  KGI  N           CK+ K+
Sbjct: 175 TCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKI 234

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
             A  ++  M+  G+ P + TY  +++G+CL+ ++N A+ +F+ M  KG +P+V +YS L
Sbjct: 235 SRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSL 294

Query: 204 INGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNV 240
           I+G+CK  N+ +A+ V  EM+ NG                         ++F  M   + 
Sbjct: 295 IHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQ 354

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           +P   TC I +DGL K     E + LF  +E  N EL +  +N ++ G C FG F  A E
Sbjct: 355 LPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDARE 414

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF+ L  K +  DVVAY  +I  L KEG +     LL+ MEENGC  +  T+N L+   L
Sbjct: 415 LFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRGLL 474

Query: 361 QK 362
           Q+
Sbjct: 475 QR 476



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 142/331 (42%), Gaps = 37/331 (11%)

Query: 43  ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK----P 98
           A  L+K   + G +P+V T   +I  L             +  V G    G ++K    P
Sbjct: 26  AISLIKHTYSLGVKPDVHTLTIVINCLCHL----------KHTVFGFSVLGAMFKIGVEP 75

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLL 150
            V  + +LI+GLC +  V         ++D G  +N+         LCK      A   L
Sbjct: 76  TVVTFATLINGLCAEGNVGAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYL 135

Query: 151 ELM--MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           E +    RG + +I  Y+ +++  C  G + +A+  F  M  KG  PD+ +Y+ LI+G C
Sbjct: 136 EKIEGRNRGFDLLI-AYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLC 194

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
                 EA  +   M+  G            ++P   T N+ +D  CK G +     +  
Sbjct: 195 SFGRWNEATTLLGNMMRKG------------IMPNVQTFNVLVDNFCKEGKISRAKTIMC 242

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +     E  V  +NS+I G C       A ++F  +  K L+ +VV Y+ LIH   K  
Sbjct: 243 FMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTR 302

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            I K  ++L  M  NG  LDV T++TL+  F
Sbjct: 303 NINKAIFVLDEMVNNGLNLDVVTWSTLIGGF 333



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 13/228 (5%)

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
           ++ K      A  L++     G+ P + T T ++N  C +       ++  +M + G  P
Sbjct: 16  VIVKMKHYATAISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEP 75

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
            V +++ LING C   NV  A   +  +   G++              ++T    I+GLC
Sbjct: 76  TVVTFATLINGLCAEGNVGAAARFADSLEDMGYES------------NSYTHGTIINGLC 123

Query: 256 KNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           K G     +     +E  N    + I +++++   CK G+  +A   F+ ++CK +  D+
Sbjct: 124 KVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDL 183

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           VAYN LIH L   G+  +   LL +M   G   +V TFN L+ +F ++
Sbjct: 184 VAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKE 231


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 191/405 (47%), Gaps = 72/405 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF +LI G C  G    A +L   M   GC+P+V T +T+I GL + G       L ++
Sbjct: 164 VTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKK 223

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN------------ 132
           M     +  G  +PN+  Y +LID LC+DRLV++  D+F  MK KGI+            
Sbjct: 224 M-----EEAGC-QPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQG 277

Query: 133 ---------ANTLL----------------------CKKTKLVEANRLLELMMQRGLNPV 161
                    A+ LL                      CK+ K+ EA  +L+ M + G+ P 
Sbjct: 278 LCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPN 337

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           + TY+ L+ GY L   V  A  LF  M  KG  P++FSY++LINGYCK   ++EAM +  
Sbjct: 338 VVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFN 397

Query: 222 EMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           EMI  G                        + +F  M     +P+ FT +I +DG CK G
Sbjct: 398 EMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQG 457

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           ++ +   LF  ++ +  +  + ++  L+   CK G  + A +LF++L  + L   V  Y 
Sbjct: 458 YLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYT 517

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +I+ L KEG + +      +ME +GC  D  ++N ++   LQ +
Sbjct: 518 TIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHK 562



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 137/271 (50%), Gaps = 21/271 (7%)

Query: 98  PNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           P +  +  L+  + K  +  D    L  +M+  G++ N           C+  ++     
Sbjct: 90  PCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFS 149

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L  +++ GL P I T+T L+NG C VG+   A+ LFD M  KG  PDV++Y+ +ING C
Sbjct: 150 VLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLC 209

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K      A  + ++M   G +            P   T +  ID LC++  V E +++F 
Sbjct: 210 KIGETAAAAGLLKKMEEAGCQ------------PNMVTYSTLIDSLCRDRLVNEALDIFS 257

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            ++       +  + SLI+G CKF  ++ AS L N+++  N++ D+V +N+L+    KEG
Sbjct: 258 YMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEG 317

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ++ +   +L +M E G   +V T+++LM  +
Sbjct: 318 KVSEALGVLKTMTEMGVEPNVVTYSSLMYGY 348



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           ++  Y   N V +  L+   C  GN +DA +L  ++   G +P+V    T+I GL + G 
Sbjct: 469 MQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGL 528

Query: 75  MNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM--EMKDKGI 131
           ++  L+  + M  +G         P+   Y  +I GL + +  D+++ L +  EM+D+G 
Sbjct: 529 LDEALEAFRNMEADGC-------PPDEISYNVIIRGLLQHK--DESRALLLVGEMRDRGF 579

Query: 132 NANTLLC 138
            A+   C
Sbjct: 580 IADVRPC 586


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 184/369 (49%), Gaps = 40/369 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN LI      G + +A  +  +M   G RP+V T  TLI+   R G +   ++   +M+
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501

Query: 87  N-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------- 136
           + G+       +PN   Y SLI G C    + + K+L  EM  KGI    +         
Sbjct: 502 SIGL-------EPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHS 554

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC + ++++A+ +  L++  G  P I T+  L++GYCLVGK+  A  + D+M   G  PD
Sbjct: 555 LCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPD 614

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFN 233
           V +Y+ L++GYCK+  +++ + + REM              +L+G          KK+F+
Sbjct: 615 VVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFH 674

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM       +  T  I + GLC+N    E + LF  L   +C+  + I N++I    K  
Sbjct: 675 EMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVR 734

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A++LF  +S   LV +V  Y ++IH L KEG +++ + +  SME++GCA      N
Sbjct: 735 RREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLN 794

Query: 354 TLMISFLQK 362
            ++   LQK
Sbjct: 795 DIIRMLLQK 803



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 176/383 (45%), Gaps = 64/383 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGLRRTGNMNLTLK 80
           N +++N++IK  C +   ++A  +V++MA  G  C P+V + +T+I G  + G ++    
Sbjct: 226 NAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACN 285

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  EMV       G+ +P+V  Y S++D LCK R +D+ + +  +M DKG+  + L    
Sbjct: 286 LINEMVQK-----GV-EPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTA 339

Query: 137 ---------------------------------------LCKKTKLVEANRLLELMMQRG 157
                                                  LCK  +  +A  + + M  +G
Sbjct: 340 IIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKG 399

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
             P + +Y+ LL+GY   G+      LF SMA KG + +   +++LI+ + K   ++EAM
Sbjct: 400 HMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAM 459

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            V            F EM+   V P+  T +  I   C+ G + + ME F  +     E 
Sbjct: 460 LV------------FTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEP 507

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV-ADVVAYNILIHALGKEGQIKKENYL 336
              +++SLI G C  G    A EL +++  K +   ++V ++ +IH+L  EG++   + +
Sbjct: 508 NTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDV 567

Query: 337 LLSMEENGCALDVDTFNTLMISF 359
              +   G    + TFN+L+  +
Sbjct: 568 FNLVIHIGDRPTIVTFNSLIDGY 590



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 137/285 (48%), Gaps = 24/285 (8%)

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-------INANTLL 137
           +++ M D G +  PN   Y ++I  LC D    +  D+   M  +G       ++ NT++
Sbjct: 214 LLHRMSDLGCV--PNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVI 271

Query: 138 C---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K+ ++ +A  L+  M+Q+G+ P + TY  +++  C    ++ A  +   M  KG  
Sbjct: 272 HGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVE 331

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +Y+ +I+GY  + + +E+             K+F +M    ++P   T N F+  L
Sbjct: 332 PDGLTYTAIIHGYSCSGHWKES------------AKMFRKMTSKGLIPGIVTFNSFMSSL 379

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK+G   +  E+F  +        +  ++ L+ G    G F   + LF+ ++ K +VA+ 
Sbjct: 380 CKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANC 439

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             +NILI A  K G + +   +   M+  G   DV T++TL+ +F
Sbjct: 440 HCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAF 484



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 23/264 (8%)

Query: 110 LCKDRLVDQTKDLFME-MKDKG-----INANTL---LCKKTKLVEANRLLELMMQRG--L 158
           LC  +  D+  D+ +  M D G     I+ NT+   LC  ++  EA  +++ M + G   
Sbjct: 201 LCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRC 260

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           +P + ++  +++G+   G+V+ A  L + M +KG  PDV +Y+ +++  CK   +++A  
Sbjct: 261 SPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAEL 320

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           V R+M+  G            V P+  T    I G   +GH  E  ++F  +        
Sbjct: 321 VLRQMVDKG------------VEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPG 368

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  FNS +   CK G  + A E+F  ++ K  + D+V+Y+IL+H    EG+    N L  
Sbjct: 369 IVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFH 428

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
           SM + G   +   FN L+ +  ++
Sbjct: 429 SMADKGIVANCHCFNILISAHAKR 452



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 133/331 (40%), Gaps = 46/331 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V+ A   F   I    RP   VTFNSLI G+C+ G +  A  ++  M + G  P+V T 
Sbjct: 560 RVMDAHDVFNLVIHIGDRP-TIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTY 618

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL++G  ++G ++  L L +EM++         KP    Y  ++DGL         K +
Sbjct: 619 NTLVSGYCKSGKIDDGLILFREMLHKK------VKPTTVTYSIVLDGLFHAGRTSAAKKM 672

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           F EM D G   +                           I TY  LL G C     + AI
Sbjct: 673 FHEMIDSGTAVD---------------------------IDTYKILLKGLCRNDLTDEAI 705

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            LF  +       D+   + +IN   K    EEA +            +F  +    +VP
Sbjct: 706 TLFHKLGAMDCKFDITILNTVINALYKVRRREEAND------------LFAAISTSGLVP 753

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              T  + I  L K G V E   +F ++E S C     + N +IR   + G    A    
Sbjct: 754 NVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYM 813

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
           +K+    +  +    ++L+     +G+ +++
Sbjct: 814 SKVDGTIISLEASTTSLLMSLFSSKGKHREQ 844



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 38/262 (14%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL 158
           +V  YG L+D  C+ R  D     F  +   G+        +T+ +EAN  L+ +     
Sbjct: 155 SVHTYGILMDCCCRARRPDLGPAFFARLLRAGL--------RTRTIEANTFLKCL----- 201

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAI-ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
                         C   + + A+  L   M+  G +P+  SY+ +I   C +   +EA+
Sbjct: 202 --------------CHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEAL 247

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           ++ + M   G +        C+  P+  + N  I G  K G V +   L   +     E 
Sbjct: 248 DMVQRMAKEGGR--------CS--PDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEP 297

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  +NS++   CK    + A  +  ++  K +  D + Y  +IH     G  K+   + 
Sbjct: 298 DVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMF 357

Query: 338 LSMEENGCALDVDTFNTLMISF 359
             M   G    + TFN+ M S 
Sbjct: 358 RKMTSKGLIPGIVTFNSFMSSL 379


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 176/345 (51%), Gaps = 26/345 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+L+ G C  G + +A +L+ +M   G +P+  + DTL+ GL +TG +++ LK+ 
Sbjct: 111 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF 170

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++  NG         P+V  Y +LI GLCK   +D+   LF +M++     + +      
Sbjct: 171 EDNSNG------DCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALM 224

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  +L EA ++LE M  R   P + TY+ L++G C  G+V  A  +F  M  +G  
Sbjct: 225 DGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIE 284

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V +Y+ LI+G+C    V+ A+ +  EM   G             +P+  T N  IDGL
Sbjct: 285 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG------------CLPDIITYNTLIDGL 332

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G   E   LF  ++   C   V  ++ LI G CK    ++A  LF+ +  + ++ DV
Sbjct: 333 CKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDV 392

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V ++ L+      G +     LL  M  + C+ DV T+ +L+  F
Sbjct: 393 VTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGF 437



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 28/343 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+  +I G C    + +A+    KM   G  PN  T + LI G  +   ++    L 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           +EM  +G+        PNV  Y ++I G C+   VD    LF +M + G     +  NTL
Sbjct: 66  KEMKESGLA-------PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTL 118

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   C+   + EA  LL+ M +RGL P  F+Y  L+ G C  GK+++A+ +F+  +    
Sbjct: 119 LSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDC 178

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PDV +YS LI G CK   ++EA             K+F +M+  +  P+  T    +DG
Sbjct: 179 PPDVVAYSTLIAGLCKTGRLDEAC------------KLFEKMRENSCEPDVVTFTALMDG 226

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK   + E  ++  T+E  NC   V  ++SLI G CK G    A E+F ++  + +  +
Sbjct: 227 LCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 286

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           VV YN LIH       +     L+  M   GC  D+ T+NTL+
Sbjct: 287 VVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLI 329



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 167/341 (48%), Gaps = 27/341 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF +L+ G C    +++A Q+++ M    C PNV T  +LI GL +TG +    ++ + 
Sbjct: 218 VTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKR 277

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M+       GI +PNV  Y SLI G C    VD    L  EM   G     I  NTL   
Sbjct: 278 MI-----VRGI-EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDG 331

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  +  EANRL   M  +  NP + TY+ L+ G+C + ++++A  LFD M ++  +PD
Sbjct: 332 LCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPD 391

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V ++S L+ GYC    V++A            +++  EM   +  P+ +T    +DG CK
Sbjct: 392 VVTFSTLVEGYCNAGLVDDA------------ERLLEEMVASDCSPDVYTYTSLVDGFCK 439

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G ++E   +   +    C+  V  + +LI   C+ G   +A +L  ++    +  +V+ 
Sbjct: 440 VGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVIT 499

Query: 317 YNILIHALGKEGQIKKENYLLLSMEEN-GCALDVDTFNTLM 356
           Y  LI      G +++   +L  +E +  C  D+  +  +M
Sbjct: 500 YRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMM 540



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 174/374 (46%), Gaps = 50/374 (13%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T +V  A   F   I R   P N VT+NSLI GFCM   +  A  L+++M   GC P++ 
Sbjct: 265 TGQVRDAQEVFKRMIVRGIEP-NVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDII 323

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGD---------FGGIYK-------------- 97
           T +TLI GL +TG      +L  +M     +          GG  K              
Sbjct: 324 TYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 383

Query: 98  ------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKL 143
                 P+V  + +L++G C   LVD  + L  EM     + +           CK  ++
Sbjct: 384 LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRM 443

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           VEA R+L+ M +RG  P + TYT L++ +C  GK  VA  L + M   G  P+V +Y  L
Sbjct: 444 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSL 503

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I G+C   ++EEA    R+M+    +++  +    N   + F   + +DGLC+ G +   
Sbjct: 504 IGGFCGTGDLEEA----RKML----ERLERDE---NCKADMFAYRVMMDGLCRTGRMSAA 552

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS-CKNLVADVVAYNILIH 322
           +EL   ++ S      +I+ +LIRG C+      A E+  +++  +    +  AY  +I 
Sbjct: 553 LELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQ 612

Query: 323 ALGKEGQIKKENYL 336
            L +EG+ ++ N L
Sbjct: 613 ELAREGRHEEANAL 626



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 36/226 (15%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +++ A        +R  +P N VT+ +LI  FC  G    A +L+++M   G +PNV T 
Sbjct: 442 RMVEARRVLKRMAKRGCQP-NVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITY 500

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            +LI G   TG++    K+ + +           K ++F Y  ++DG             
Sbjct: 501 RSLIGGFCGTGDLEEARKMLERLERDEN-----CKADMFAYRVMMDG------------- 542

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                         LC+  ++  A  LLE + Q G  P    Y  L+ G C   ++  A+
Sbjct: 543 --------------LCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAM 588

Query: 183 ALFDSM--ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            + + M  +RK   P+  +Y  +I    +    EEA  ++ E++ N
Sbjct: 589 EVLEEMTLSRKS-RPNAEAYEAVIQELAREGRHEEANALADELLGN 633



 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%)

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            CE  V  +  +I G CK      A+  F K+  K  V +   YN+LI+   K  ++ + 
Sbjct: 2   ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRA 61

Query: 334 NYLLLSMEENGCALDVDTFNTLMISFLQK 362
             LL  M+E+G A +V T++T++  F ++
Sbjct: 62  YLLLKEMKESGLAPNVVTYSTVIHGFCRQ 90


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 176/345 (51%), Gaps = 26/345 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+L+ G C  G + +A +L+ +M   G +P+  + DTL+ GL +TG +++ LK+ 
Sbjct: 230 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF 289

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++  NG         P+V  Y +LI GLCK   +D+   LF +M++     + +      
Sbjct: 290 EDNSNG------DCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALM 343

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  +L EA ++LE M  R   P + TY+ L++G C  G+V  A  +F  M  +G  
Sbjct: 344 DGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIE 403

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V +Y+ LI+G+C    V+ A+ +  EM   G             +P+  T N  IDGL
Sbjct: 404 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG------------CLPDIITYNTLIDGL 451

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G   E   LF  ++   C   V  ++ LI G CK    ++A  LF+ +  + ++ DV
Sbjct: 452 CKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDV 511

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V ++ L+      G +     LL  M  + C+ DV T+ +L+  F
Sbjct: 512 VTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGF 556



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 28/343 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+  +I G C    + +A+    KM   G  PN  T + LI G  +   ++    L 
Sbjct: 125 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 184

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           +EM  +G+        PNV  Y ++I G C+   VD    LF +M + G     +  NTL
Sbjct: 185 KEMKESGLA-------PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTL 237

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   C+   + EA  LL+ M +RGL P  F+Y  L+ G C  GK+++A+ +F+  +    
Sbjct: 238 LSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDC 297

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PDV +YS LI G CK   ++EA             K+F +M+  +  P+  T    +DG
Sbjct: 298 PPDVVAYSTLIAGLCKAGRLDEAC------------KLFEKMRENSCEPDVVTFTALMDG 345

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK   + E  ++  T+E  NC   V  ++SLI G CK G    A E+F ++  + +  +
Sbjct: 346 LCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 405

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           VV YN LIH       +     L+  M   GC  D+ T+NTL+
Sbjct: 406 VVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLI 448



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 166/341 (48%), Gaps = 27/341 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF +L+ G C    +++A Q+++ M    C PNV T  +LI GL +TG +    ++ + 
Sbjct: 337 VTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKR 396

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M+       GI +PNV  Y SLI G C    VD    L  EM   G     I  NTL   
Sbjct: 397 MI-----VRGI-EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDG 450

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  +  EANRL   M  +  NP + TY+ L+ G+C + ++++A  LFD M ++  +PD
Sbjct: 451 LCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPD 510

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V ++S L+ GYC    V++A            +++  EM   +  P+ +T    +DG CK
Sbjct: 511 VVTFSTLVEGYCNAGLVDDA------------ERLLEEMVASDCSPDVYTYTSLVDGFCK 558

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G ++E   +   +    C+  V  + +LI   C+ G   +A  L  ++    +  +V+ 
Sbjct: 559 VGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVIT 618

Query: 317 YNILIHALGKEGQIKKENYLLLSMEEN-GCALDVDTFNTLM 356
           Y  LI      G +++   +L  +E +  C  D+  +  +M
Sbjct: 619 YRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMM 659



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 163/339 (48%), Gaps = 23/339 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L +       I +   ++K     G  PNV T   +I GL ++G+++   +L 
Sbjct: 23  NVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELL 82

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-DKGINANTL----L 137
           +EM       G +  P+   Y  +I  LCK R   +  D F  M+ +K +   T+    L
Sbjct: 83  EEMRES----GPV--PDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGL 136

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  +L EA      M ++G  P  +TY  L+NG+C V KV+ A  L   M   G  P+V
Sbjct: 137 CKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNV 196

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +YS +I+G+C+   V+ A  + R+M+ NG             +P   T N  + GLC+N
Sbjct: 197 VTYSTVIHGFCRQTKVDTAYKLFRQMVENG------------CMPNLVTYNTLLSGLCRN 244

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + E  EL   +     +     +++L+ G CK G  ++A ++F   S  +   DVVAY
Sbjct: 245 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 304

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + LI  L K G++ +   L   M EN C  DV TF  LM
Sbjct: 305 STLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALM 343



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 171/375 (45%), Gaps = 52/375 (13%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T +V  A   F   I R   P N VT+NSLI GFCM   +  A  L+++M   GC P++ 
Sbjct: 384 TGQVRDAQEVFKRMIVRGIEP-NVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDII 442

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGD---------FGGIYK-------------- 97
           T +TLI GL +TG      +L  +M     +          GG  K              
Sbjct: 443 TYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 502

Query: 98  ------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKL 143
                 P+V  + +L++G C   LVD  + L  EM     + +           CK  ++
Sbjct: 503 LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRM 562

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           VEA R+L+ M +RG  P + TYT L++ +C  GK  VA  L + M   G  P+V +Y  L
Sbjct: 563 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSL 622

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC-NVVPETFTCNIFIDGLCKNGHVLE 262
           I G+C   ++EEA            +KI   ++   N   + F   + +DGLC+ G +  
Sbjct: 623 IGGFCGTGDLEEA------------RKILERLERDENCKADMFAYRVMMDGLCRTGRMSA 670

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS-CKNLVADVVAYNILI 321
            +EL   ++ S      +I+ +LIRG C+      A E+  +++  +    +  AY  +I
Sbjct: 671 ALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVI 730

Query: 322 HALGKEGQIKKENYL 336
             L +EG+ ++ N L
Sbjct: 731 QELAREGRHEEANAL 745



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 101/208 (48%), Gaps = 15/208 (7%)

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           Q+G +  ++TY  L        +++    +  +    G  P+VF+Y+V+I G CK+ +++
Sbjct: 17  QQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLD 76

Query: 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +A             ++  EM+    VP+    N  I  LCK  +  + ++ F ++E   
Sbjct: 77  KAC------------ELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME--- 121

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           CE  V  +  +I G CK      A+  F K+  K  V +   YN+LI+   K  ++ +  
Sbjct: 122 CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 181

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQK 362
            LL  M+E+G A +V T++T++  F ++
Sbjct: 182 LLLKEMKESGLAPNVVTYSTVIHGFCRQ 209



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 36/226 (15%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +++ A        +R  +P N VT+ +LI  FC  G    A +L+++M   G +PNV T 
Sbjct: 561 RMVEARRVLKRMAKRGCQP-NVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITY 619

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            +LI G   TG++    K+ + +           K ++F Y  ++DG             
Sbjct: 620 RSLIGGFCGTGDLEEARKILERLERDEN-----CKADMFAYRVMMDG------------- 661

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                         LC+  ++  A  LLE + Q G  P    Y  L+ G C   ++  A+
Sbjct: 662 --------------LCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAM 707

Query: 183 ALFDSM--ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            + + M  +RK   P+  +Y  +I    +    EEA  ++ E++ N
Sbjct: 708 EVLEEMTLSRKS-RPNAEAYEAVIQELAREGRHEEANALADELLGN 752


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 184/392 (46%), Gaps = 38/392 (9%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K   A+  F   + R  +P +D T+ ++I G C  G    A+ L KKM   GC+ NV T 
Sbjct: 60  KFAQAVELFDDMVARGCQP-DDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTY 118

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            TLI  L +   +N  L +   M            P +F Y SLI GLC      +   L
Sbjct: 119 STLIHSLCKYRRVNEALDIFSYMK------AKDISPTIFTYTSLIQGLCNFSRWKEASAL 172

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM    I  N +         CK+ K++ A  +L+ M + G+ P + TY  L+ GY +
Sbjct: 173 LNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSM 232

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG------- 227
             +V  A  LFD M  KG  PDVFSYS+LINGYCK   ++EA  +  EMI  G       
Sbjct: 233 WTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVS 292

Query: 228 ----------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                            + +F  M     +P  +T  I +DG CK G++ +   LF  ++
Sbjct: 293 YNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQ 352

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            +  +  + ++N L+   CK G  + A ELF++L    L  +V  Y  +I+ L KEG + 
Sbjct: 353 STYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLD 412

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +      +ME++GC  D  ++N ++  FLQ +
Sbjct: 413 EALEAFRNMEDDGCPPDEFSYNVIIRGFLQHK 444



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 161/348 (46%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T N LI  FC    +     ++ K    G +P + T  TLI GL + G     ++L 
Sbjct: 9   NTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELF 68

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +MV          +P+ + Y ++I+GLCK         LF +M++ G   N +      
Sbjct: 69  DDMV------ARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLI 122

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ EA  +   M  + ++P IFTYT L+ G C   +   A AL + M     M
Sbjct: 123 HSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIM 182

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V +++VL++ +CK   V  A  V + M   G            V P+  T N  + G 
Sbjct: 183 PNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMG------------VEPDVVTYNSLMYGY 230

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
                V+E  +LF  +    C+  V  ++ LI G CK    + A +LFN++  +    + 
Sbjct: 231 SMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNN 290

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V+YN LIH L + G++++   L  +M  NG   ++ T+  L+  F ++
Sbjct: 291 VSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQ 338



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 129/296 (43%), Gaps = 31/296 (10%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQ-----TKDLFMEMKDKGINANTL---LCKKTKLVEANR 148
            PN      LI+  C+ + VD       K + + ++   +   TL   L K  K  +A  
Sbjct: 7   SPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVE 66

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L + M+ RG  P  +TYT ++NG C +G+  +A  LF  M   G   +V +YS LI+  C
Sbjct: 67  LFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLC 126

Query: 209 KNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMKLCNVVPETF 245
           K   V EA+++   M              ++ G            + NEM   N++P   
Sbjct: 127 KYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVV 186

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T N+ +D  CK G VL    +  T+     E  V  +NSL+ G   +     A +LF+ +
Sbjct: 187 TFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVM 246

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             K    DV +Y+ILI+   K  +I +   L   M   G   +  ++NTL+    Q
Sbjct: 247 ITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQ 302



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 47/238 (19%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           GL+P   T   L+N +C + +V++  ++     + G  P + +++ LING  K     +A
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           + +  +M+  G +            P+ +T    I+GLCK G       LF  +E + C+
Sbjct: 65  VELFDDMVARGCQ------------PDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQ 112

Query: 277 LFV--------------------EIFN---------------SLIRGCCKFGIFEIASEL 301
           L V                    +IF+               SLI+G C F  ++ AS L
Sbjct: 113 LNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASAL 172

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            N+++  N++ +VV +N+L+    KEG++     +L +M E G   DV T+N+LM  +
Sbjct: 173 LNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGY 230


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 189/431 (43%), Gaps = 97/431 (22%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A    G  ++R Y+ LN +T  +++KG C+ G +R A +    +   G   +  T  TLI
Sbjct: 132 AFSVLGMVLKRGYQ-LNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLI 190

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G      +L  +M       G + +PNV  Y  ++DGLCKD LV + +DL+ ++
Sbjct: 191 NGLCKIGLTREAFELLHKME------GQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDV 244

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             +GI+ +                                             LCKK  L
Sbjct: 245 VGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGML 304

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            +A+ +  LM++RG  P + T+  L++GYCL   V  A  LFD+ A  G  PDV+SY++L
Sbjct: 305 GKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNIL 364

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I GYCKN  ++EA++            +FN+M    + P   T +  IDGLCK+G +   
Sbjct: 365 IIGYCKNNRIDEALS------------LFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYA 412

Query: 264 MELFPTLEISN------------------------CELF-----------VEIFNSLIRG 288
            ELF  +                             ELF           V  +N LI G
Sbjct: 413 WELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILING 472

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            CK    + A  LF ++  +NLV D V YN LI  L K G+I     L   M + G  +D
Sbjct: 473 YCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVD 532

Query: 349 VDTFNTLMISF 359
           V T+N L  +F
Sbjct: 533 VITYNILFDAF 543



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 126/258 (48%), Gaps = 33/258 (12%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I R  RP + VTFN+L+ G+C+  ++ +A +L    A  G  P+V + + LI G  +   
Sbjct: 315 IERGQRP-DLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNR 373

Query: 75  MNLTLKLHQEMVNGMGDFGGIYK---PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
           ++  L L  +M          YK   PN+  Y SLIDGLCK   +    +LF  + D G 
Sbjct: 374 IDEALSLFNKMN---------YKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGP 424

Query: 132 NANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
           + N +        LCK   + +A  L  LM +RGL P + +Y  L+NGYC   +++ A+ 
Sbjct: 425 SPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMN 484

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           LF+ M R+  +PD  +Y+ LI+G CK+  +  A             ++FN M       +
Sbjct: 485 LFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAW------------ELFNVMHDGGPPVD 532

Query: 244 TFTCNIFIDGLCKNGHVL 261
             T NI  D   K  HV+
Sbjct: 533 VITYNILFDAFSKIQHVI 550



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 23/246 (9%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           + K      A  L + M  RG+ P I T + L+N YC +G +  A ++   + ++G+  +
Sbjct: 88  IVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLN 147

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
             + + ++ G C N  V +A+     ++  GF                        ++ +
Sbjct: 148 AITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLH 207

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +M+   V P     N+ +DGLCK+G V E  +L+  +     +  V  +  LI G C  G
Sbjct: 208 KMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLG 267

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
            +   + L   +  +N+  +V  YNILI AL K+G + K + +   M E G   D+ TFN
Sbjct: 268 QWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFN 327

Query: 354 TLMISF 359
           TLM  +
Sbjct: 328 TLMSGY 333



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 23/226 (10%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P +  +  +L     +     AI+L   M  +G  P + + S+LIN YC   ++  A +V
Sbjct: 76  PSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSV 135

Query: 220 SREMILNGFK----KIFNEMK-LC-------------NVVPETF-----TCNIFIDGLCK 256
              ++  G++     +   MK LC             +VV + F     T    I+GLCK
Sbjct: 136 LGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCK 195

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G   E  EL   +E       V I+N ++ G CK G+   A +L++ +  + +  DV  
Sbjct: 196 IGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFT 255

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           Y  LIH     GQ ++   LL  M +    L+V T+N L+ +  +K
Sbjct: 256 YTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKK 301


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 188/399 (47%), Gaps = 62/399 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           +   F   +++ Y P + VTF  LIKG C++G +  A     K+   G + +  +  TLI
Sbjct: 112 SFSVFAKILKKGYHP-DAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLI 170

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL R G     ++L + +       G + +PNV  Y ++ID +CKD+LV+   DL+ EM
Sbjct: 171 NGLCRVGETKAAVQLLRRVD------GKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEM 224

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             K I+ + +                                            CK+ K+
Sbjct: 225 VSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKV 284

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA  +L +MM++ +   + TY  L++GYCLV +VN A +LF+ MA++G  PDV+SYS++
Sbjct: 285 REAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIM 344

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           ING+CK   V+EAM            K+F EM    + P   T N  +DGLCK+G     
Sbjct: 345 INGFCKIKMVDEAM------------KLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCA 392

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           +EL   +        +  +NS++   CK    + A  L  K+  K +  D+  Y +LI+ 
Sbjct: 393 LELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLING 452

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           L K G++     +   +   G + ++ T+ +L+  F  K
Sbjct: 453 LCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNK 491



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 123/241 (51%), Gaps = 26/241 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT+NSL+ G+C+   +  A  L   MA  G  P+V +   +I G  +   ++  +KL
Sbjct: 301 LDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKL 360

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM         I+ PNV  Y SL+DGLCK        +L  EM D+G  +N +     
Sbjct: 361 FEEM-----HCKQIF-PNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSI 414

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              +CK   + +A  LL  + ++G+ P IFTYT L+NG C VG+++ A  +F+ +  KG+
Sbjct: 415 LDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGY 474

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P++++Y+ LING+C     +E + +  +M  NG             +P   T  I I  
Sbjct: 475 SPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNG------------CIPNAITYEILIHS 522

Query: 254 L 254
           L
Sbjct: 523 L 523



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 114/211 (54%), Gaps = 14/211 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +++ +I GFC    + +A +L ++M      PNV T ++L+ GL ++G  +  L    E+
Sbjct: 340 SYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCAL----EL 395

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           V+ M D G     N+  Y S++D +CK+  VD+   L  ++K+KGI  +          L
Sbjct: 396 VDEMHDRGQ--PSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGL 453

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  +L +A ++ E ++ +G +P I+TYT L+NG+C  G  +  +A+   M   G +P+ 
Sbjct: 454 CKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNA 513

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
            +Y +LI+   +    ++A  + REMI  G 
Sbjct: 514 ITYEILIHSLFEKDENDKAEKLLREMIARGL 544



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 126/267 (47%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--------KKTKLVEANRL 149
           P    +G ++  L K +       L  +M+  GI  + + C        +   +  +  +
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              ++++G +P   T+T L+ G CL G+V+ A+   D +  +GF  D  SY  LING C+
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCR 175

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
               + A+ + R +          + KL  V P     +  ID +CK+  V +  +L+  
Sbjct: 176 VGETKAAVQLLRRV----------DGKL--VRPNVVMYSTIIDSMCKDKLVNDAFDLYCE 223

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +        V  ++SLI G C  G  + A +LFN++   N+  +V  ++ILI    KEG+
Sbjct: 224 MVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGK 283

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           +++   +L  M +    LDV T+N+LM
Sbjct: 284 VREAKNVLAVMMKKNVKLDVVTYNSLM 310



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 16/148 (10%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           +P N +T+NS++   C   ++  A  L+ K+   G +P++ T   LI GL + G ++   
Sbjct: 404 QPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQ 463

Query: 80  KLHQE-MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           K+ ++ +V G       Y PN++ Y SLI+G C     D+   +  +MKD G   N +  
Sbjct: 464 KVFEDLLVKG-------YSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITY 516

Query: 137 ------LCKKTKLVEANRLLELMMQRGL 158
                 L +K +  +A +LL  M+ RGL
Sbjct: 517 EILIHSLFEKDENDKAEKLLREMIARGL 544



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 92/213 (43%), Gaps = 15/213 (7%)

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
           NRLL    +    P    +  +L       +   A++L   M   G  PD  + ++L+N 
Sbjct: 46  NRLLH---KNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNC 102

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           + +  +++ + +V  +++  G+             P+  T  I I GLC  G V + +  
Sbjct: 103 FSQLGHIKFSFSVFAKILKKGYH------------PDAVTFTILIKGLCLKGEVHKALYF 150

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +     +L    + +LI G C+ G  + A +L  ++  K +  +VV Y+ +I ++ K
Sbjct: 151 HDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCK 210

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +  +     L   M     + DV T+++L+  F
Sbjct: 211 DKLVNDAFDLYCEMVSKRISPDVVTYSSLISGF 243


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 182/343 (53%), Gaps = 28/343 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++N +I G C EG +++ S+++++M+     P+  T +TLI G    GN +  L LH
Sbjct: 272 NLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLH 331

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TL 136
            EMV NG+        PNV  Y +LI+ +CK   +++  +   +M+D+G++ N     TL
Sbjct: 332 AEMVKNGLS-------PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTL 384

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +    ++  L +A ++++ M++ G  P I TY  L+NG+C++G++  A  L   M  +GF
Sbjct: 385 IDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGF 444

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PDV SYS +I+G+C+N  +E+A  +  EM+  G            + P+  T +  I G
Sbjct: 445 IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG------------ISPDVATYSSLIQG 492

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK   + EV +LF  +           + SLI   C  G  + A  L +++  K    D
Sbjct: 493 LCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPD 552

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +V YN+LI+   K+ + K+   LLL +       +  T+NTL+
Sbjct: 553 IVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLI 595



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 167/361 (46%), Gaps = 27/361 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
            L  FG   R    P N VT+N++I  +C    I +A +L++ MA  G  PN+ + + +I
Sbjct: 222 GLXFFGEMERNGCLP-NVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVI 280

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL R G M  T ++ +EM          Y P+   + +LI+G C      Q   L  EM
Sbjct: 281 NGLCREGQMKETSEILEEMSKRR------YVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G++ N +        +CK   L  A   L+ M  RGL+P   TYT L++G+   G +
Sbjct: 335 VKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFL 394

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A  +   M   GF P + +Y+ LING+C    +E+A  + +EMI  GF          
Sbjct: 395 KQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGF---------- 444

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
             +P+  + +  I G C+N  + +  +L   +        V  ++SLI+G CK       
Sbjct: 445 --IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEV 502

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            +LF ++    L  D V Y  LI+A   EG + K   L   M + G + D+ T+N L+  
Sbjct: 503 CDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLING 562

Query: 359 F 359
           F
Sbjct: 563 F 563



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 159/338 (47%), Gaps = 41/338 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+ +LI GF  +G ++ A Q++K+M   G  P + T + LI G    G M     L 
Sbjct: 377 NGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLL 436

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QEM+    + G I  P+V  Y ++I G C+++ +++   L +EM  KGI+ +        
Sbjct: 437 QEMI----ERGFI--PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLI 490

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+ +L E   L + M+  GL P   TYT L+N YC+ G ++ A+ L D M +KGF 
Sbjct: 491 QGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFS 550

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID-- 252
           PD+ +Y+VLING+ K    +EA            K++  ++     VP   T N  ID  
Sbjct: 551 PDIVTYNVLINGFNKQSRTKEA------------KRLLLKLLYEESVPNEITYNTLIDNC 598

Query: 253 -------------GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
                        G C  G + E   +  ++     +L  E++N +I G  K G  E A 
Sbjct: 599 NNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAY 658

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            L+ ++         V    L  +L  EG+  + N LL
Sbjct: 659 NLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLL 696



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 170/365 (46%), Gaps = 36/365 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +   F+ ++K       I  A  +V    ++G  P V + + ++  + RT     ++K+ 
Sbjct: 131 SSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQ---SVKIA 187

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           + +   M + G    PNV+ Y  LI G C    ++     F EM+  G     +  NT++
Sbjct: 188 EGIFKEMVESG--VSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTII 245

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  K+ EA +LL LM  +GLNP + +Y  ++NG C  G++     + + M+++ ++
Sbjct: 246 DAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV 305

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PD  +++ LINGYC   N  +A+ +  EM+ NG                         + 
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            ++M+   + P   T    IDG  + G + +  ++   +  +     +  +N+LI G C 
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E AS L  ++  +  + DVV+Y+ +I    +  +++K   L + M   G + DV T
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485

Query: 352 FNTLM 356
           +++L+
Sbjct: 486 YSSLI 490



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 136/314 (43%), Gaps = 44/314 (14%)

Query: 49  KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108
           K + + C+ +    D ++    R   +N  L +    VN    +G  + P V  Y +++D
Sbjct: 122 KNSYYQCKSSSAVFDLVVKSCARVNLINKALSI----VNLAKSYG--FMPGVLSYNAILD 175

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            + + +                        +  K+ E   + + M++ G++P ++TY  L
Sbjct: 176 AVIRTK------------------------QSVKIAEG--IFKEMVESGVSPNVYTYNIL 209

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           + G+C  G + + +  F  M R G +P+V +Y+ +I+ YCK   + EA  + R M L G 
Sbjct: 210 IRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGL 269

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                        P   + N+ I+GLC+ G + E  E+   +           FN+LI G
Sbjct: 270 N------------PNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLING 317

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C  G F  A  L  ++    L  +VV Y  LI+++ K G + +    L  M + G   +
Sbjct: 318 YCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPN 377

Query: 349 VDTFNTLMISFLQK 362
             T+ TL+  F Q+
Sbjct: 378 GRTYTTLIDGFSQQ 391



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 32/199 (16%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM----N 76
           P ++VT+ SLI  +C+EG++  A +L  +M   G  P++ T + LI G  +         
Sbjct: 515 PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKR 574

Query: 77  LTLK-LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           L LK L++E V           PN   Y +LID  C +    + K     MK        
Sbjct: 575 LLLKLLYEESV-----------PNEITYNTLIDN-CNNL---EFKSALALMKG------- 612

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             C K  + EA+R+LE M+Q+G       Y  +++G+  VG +  A  L+  M   GF P
Sbjct: 613 -FCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAP 671

Query: 196 DVFSYSVLINGYCKNFNVE 214
               +SV I    K+   E
Sbjct: 672 ----HSVTIMALAKSLYHE 686


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 182/343 (53%), Gaps = 28/343 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++N +I G C EG +++ S+++++M+     P+  T +TLI G    GN +  L LH
Sbjct: 272 NLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLH 331

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TL 136
            EMV NG+        PNV  Y +LI+ +CK   +++  +   +M+D+G++ N     TL
Sbjct: 332 AEMVKNGLS-------PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTL 384

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +    ++  L +A ++++ M++ G  P I TY  L+NG+C++G++  A  L   M  +GF
Sbjct: 385 IDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGF 444

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PDV SYS +I+G+C+N  +E+A  +  EM+  G            + P+  T +  I G
Sbjct: 445 IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG------------ISPDVATYSSLIQG 492

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK   + EV +LF  +           + SLI   C  G  + A  L +++  K    D
Sbjct: 493 LCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPD 552

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +V YN+LI+   K+ + K+   LLL +       +  T+NTL+
Sbjct: 553 IVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLI 595



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 167/361 (46%), Gaps = 27/361 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
            L  FG   R    P N VT+N++I  +C    I +A +L++ MA  G  PN+ + + +I
Sbjct: 222 GLFFFGEMERNGCLP-NVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVI 280

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL R G M  T ++ +EM          Y P+   + +LI+G C      Q   L  EM
Sbjct: 281 NGLCREGQMKETSEILEEMSKRR------YVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G++ N +        +CK   L  A   L+ M  RGL+P   TYT L++G+   G +
Sbjct: 335 VKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFL 394

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A  +   M   GF P + +Y+ LING+C    +E+A  + +EMI  GF          
Sbjct: 395 KQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGF---------- 444

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
             +P+  + +  I G C+N  + +  +L   +        V  ++SLI+G CK       
Sbjct: 445 --IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEV 502

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            +LF ++    L  D V Y  LI+A   EG + K   L   M + G + D+ T+N L+  
Sbjct: 503 CDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLING 562

Query: 359 F 359
           F
Sbjct: 563 F 563



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 159/338 (47%), Gaps = 41/338 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+ +LI GF  +G ++ A Q++K+M   G  P + T + LI G    G M     L 
Sbjct: 377 NGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLL 436

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QEM+    + G I  P+V  Y ++I G C+++ +++   L +EM  KGI+ +        
Sbjct: 437 QEMI----ERGFI--PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLI 490

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+ +L E   L + M+  GL P   TYT L+N YC+ G ++ A+ L D M +KGF 
Sbjct: 491 QGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFS 550

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID-- 252
           PD+ +Y+VLING+ K    +EA            K++  ++     VP   T N  ID  
Sbjct: 551 PDIVTYNVLINGFNKQSRTKEA------------KRLLLKLLYEESVPNEITYNTLIDNC 598

Query: 253 -------------GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
                        G C  G + E   +  ++     +L  E++N +I G  K G  E A 
Sbjct: 599 NNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAY 658

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            L+ ++         V    L  +L  EG+  + N LL
Sbjct: 659 NLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLL 696



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 170/365 (46%), Gaps = 36/365 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +   F+ ++K       I  A  +V    ++G  P V + + ++  + RT     ++K+ 
Sbjct: 131 SSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQ---SVKIA 187

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           + +   M + G    PNV+ Y  LI G C    ++     F EM+  G     +  NT++
Sbjct: 188 EGIFKEMVESG--VSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTII 245

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  K+ EA +LL LM  +GLNP + +Y  ++NG C  G++     + + M+++ ++
Sbjct: 246 DAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV 305

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PD  +++ LINGYC   N  +A+ +  EM+ NG                         + 
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            ++M+   + P   T    IDG  + G + +  ++   +  +     +  +N+LI G C 
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E AS L  ++  +  + DVV+Y+ +I    +  +++K   L + M   G + DV T
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485

Query: 352 FNTLM 356
           +++L+
Sbjct: 486 YSSLI 490



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 136/314 (43%), Gaps = 44/314 (14%)

Query: 49  KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108
           K + + C+ +    D ++    R   +N  L +    VN    +G  + P V  Y +++D
Sbjct: 122 KNSYYQCKSSSAVFDLVVKSCARVNLINKALSI----VNLAKSYG--FMPGVLSYNAILD 175

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            + + +                        +  K+ E   + + M++ G++P ++TY  L
Sbjct: 176 AVIRTK------------------------QSVKIAEG--IFKEMVESGVSPNVYTYNIL 209

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           + G+C  G + + +  F  M R G +P+V +Y+ +I+ YCK   + EA  + R M L G 
Sbjct: 210 IRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGL 269

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                        P   + N+ I+GLC+ G + E  E+   +           FN+LI G
Sbjct: 270 N------------PNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLING 317

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C  G F  A  L  ++    L  +VV Y  LI+++ K G + +    L  M + G   +
Sbjct: 318 YCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPN 377

Query: 349 VDTFNTLMISFLQK 362
             T+ TL+  F Q+
Sbjct: 378 GRTYTTLIDGFSQQ 391



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 32/199 (16%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM----N 76
           P ++VT+ SLI  +C+EG++  A +L  +M   G  P++ T + LI G  +         
Sbjct: 515 PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKR 574

Query: 77  LTLK-LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           L LK L++E V           PN   Y +LID  C +    + K     MK        
Sbjct: 575 LLLKLLYEESV-----------PNEITYNTLIDN-CNNL---EFKSALALMKG------- 612

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             C K  + EA+R+LE M+Q+G       Y  +++G+  VG +  A  L+  M   GF P
Sbjct: 613 -FCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAP 671

Query: 196 DVFSYSVLINGYCKNFNVE 214
               +SV I    K+   E
Sbjct: 672 ----HSVTIMALAKSLYHE 686


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 195/380 (51%), Gaps = 38/380 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R    P + V FN LI  +  +  + +A  +  KM   G  PNV T   +I  L ++G
Sbjct: 362 MVRNGIHPDHHV-FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSG 420

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
           +++  +   ++M+    D G    PN+  Y SLI  LC     D+ ++L +EM D+GI  
Sbjct: 421 SVDDAMLYFEQMI----DEG--LTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICL 474

Query: 134 NTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           NT+         CK+ +++E+ +L +LM++ G+ P + TY+ L++GYCL GK++ A  L 
Sbjct: 475 NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLL 534

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------------- 228
            SM   G  PD  +Y+ LINGYC+   +++A+ + +EM+ +G                  
Sbjct: 535 SSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 594

Query: 229 ------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                 K+++  +       E  T NI + GLCKN    E + +F  L +++ +L    F
Sbjct: 595 RRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 654

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N +I    K G  + A +LF  LS   LV DV  Y+++   L ++G +++ + L LSMEE
Sbjct: 655 NIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEE 714

Query: 343 NGCALDVDTFNTLMISFLQK 362
           NGC  +    N+++   LQ+
Sbjct: 715 NGCTANSRMLNSIVRKLLQR 734



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 168/382 (43%), Gaps = 36/382 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ +++ +R +  +TF  L+KG C +    DA  +V ++M    C P+V +C  L+ G
Sbjct: 109 ALGNVVKKGFR-VEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKG 167

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +   D GG   P+V  Y ++I+G  K+   D+    + EM D
Sbjct: 168 LCDENRSQEALELLHMMAD---DRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLD 224

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           + I+ + +        LCK   + +A  +L  M++ G+ P   TY  +L+GYC   +   
Sbjct: 225 RRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKE 284

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILN 226
           AI     M   G  PDV +Y+ L++  CKN    EA  +   M              +L 
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344

Query: 227 GF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           G+           + + M    + P+    NI I    K   V E M +F  +       
Sbjct: 345 GYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNP 404

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  + ++I   CK G  + A   F ++  + L  +++ Y  LIH+L    +  K   L+
Sbjct: 405 NVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELI 464

Query: 338 LSMEENGCALDVDTFNTLMISF 359
           L M + G  L+   FN+++ S 
Sbjct: 465 LEMLDRGICLNTIFFNSIIHSH 486



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 156/344 (45%), Gaps = 28/344 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++ ++I GF  EG+   A     +M      P+V T  ++I  L +   M+  +++   
Sbjct: 197 VSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTT 256

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           MV NG+        PN   Y S++ G C      +      +M+  G+  + +       
Sbjct: 257 MVKNGV-------MPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMD 309

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LCK  +  EA ++ + M +RGL P I TY  LL GY   G +    AL D M R G  P
Sbjct: 310 YLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP 369

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D   +++LI  Y K   V+EAM V            F++M+   + P   T    I  LC
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLV------------FSKMRQHGLNPNVVTYGAVIGILC 417

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K+G V + M  F  +        + ++ SLI   C F  ++ A EL  ++  + +  + +
Sbjct: 418 KSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTI 477

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +N +IH+  KEG++ +   L   M   G   +V T++TL+  +
Sbjct: 478 FFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGY 521



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 138/340 (40%), Gaps = 53/340 (15%)

Query: 49  KMATFGC---RPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVF 101
           +MA  G     P V T   LI    R G ++L          G    G +    ++    
Sbjct: 74  RMARAGAGKVTPTVHTYGILIGCCCRAGRLDL----------GFAALGNVVKKGFRVEAI 123

Query: 102 CYGSLIDGLCKDRLVDQTKDLFME-------MKD--------KGINANTLLCKKTKLVEA 146
            +  L+ GLC D+      D+ +        M D        KG      LC + +  EA
Sbjct: 124 TFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKG------LCDENRSQEA 177

Query: 147 NRLLELMMQR---GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
             LL +M      G  P + +YT ++NG+   G  + A + +  M  +   PDV +YS +
Sbjct: 178 LELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSI 237

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I   CK   +++AM V   M+ NG            V+P   T N  + G C +    E 
Sbjct: 238 IAALCKGQAMDKAMEVLTTMVKNG------------VMPNCMTYNSILHGYCSSEQPKEA 285

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           +     +     E  V  +NSL+   CK G    A ++F+ ++ + L  D+  Y  L+  
Sbjct: 286 IGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQG 345

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              +G + + + LL  M  NG   D   FN L+ ++ ++E
Sbjct: 346 YATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQE 385



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 15/209 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V+ +   F   +R   +P N +T+++LI G+C+ G + +A++L+  M + G +P+  T 
Sbjct: 491 RVIESEKLFDLMVRIGVKP-NVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTY 549

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI G  R   M+  L L +EMV+      G+  PN+  Y  ++ GL   R     K+L
Sbjct: 550 NTLINGYCRVSRMDDALALFKEMVS-----SGV-SPNIITYNIILQGLFHTRRTAAAKEL 603

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           ++ +   G              LCK     EA R+ + +    L     T+  ++     
Sbjct: 604 YVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 663

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           VG+ + A  LF +++  G +PDV +YS++
Sbjct: 664 VGRNDEAKDLFAALSANGLVPDVRTYSLM 692


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 185/384 (48%), Gaps = 48/384 (12%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTF +L+ G C EG +  A  LV +M   G +P+  T  T++ G+ + G+    L 
Sbjct: 7   PANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALN 66

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           + ++M           K NV  Y +++D LCKD    + +++F EM +KGI  N L    
Sbjct: 67  MLRKMDESQ------IKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                C   K  +A +LL  M++R ++P + T++ L+N +   GKV+ A  L+  M R+ 
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNV-------------------------SREMILNG 227
             P   +YS +I+G+CK+  +E+A ++                         ++  +++G
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHG 240

Query: 228 F---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           F         + +F EM    V P+  TCN  + GLC+NG + + +E+F   + S  +L 
Sbjct: 241 FCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLD 300

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
               N +I G CK    + A +LFN L    +  DVV YNILI    KEG   +   + L
Sbjct: 301 TATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYL 360

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            M   G      T+N+++  F ++
Sbjct: 361 EMLCKGIIPSTVTYNSMVDGFCKQ 384



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 171/382 (44%), Gaps = 48/382 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+N +I G+C  G   DA QL++ M      P+V T   LI    + G ++   +L+
Sbjct: 114 NVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELY 173

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           +EM+        I+ P    Y S+IDG CK   ++  K +F  M  KG     I  NTL+
Sbjct: 174 REMLRR-----NIF-PTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLI 227

Query: 138 --------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
                         C+   +  A  L + M+  G++P I T   LL G C  GK+  A+ 
Sbjct: 228 DGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALE 287

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-------------- 229
           +F    +     D  + +++ING CK   V+EA ++   + +NG +              
Sbjct: 288 MFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFV 347

Query: 230 ---------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                     I+ EM    ++P T T N  +DG CK   + E  ++  ++    C   V 
Sbjct: 348 KEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVV 407

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            F++LI+G CK G  +   ELF+++  + LVAD + YN LIH   K G +     +   M
Sbjct: 408 TFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEM 467

Query: 341 EENGCALDVDTFNTLMISFLQK 362
             +G   D  TF +++     K
Sbjct: 468 VSSGVCPDTITFRSMLAGLCTK 489



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 23/227 (10%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M++ G    + T+T L+NG C  G+V  A+AL D M  +G  PD  +Y  ++NG CK  +
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 213 VEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTCNI 249
              A+N+ R+M  +  K                        IF EM    + P   T N 
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            IDG C  G   +  +L   +   N +  V  F++LI    K G    A EL+ ++  +N
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +    + Y+ +I    K  +++   ++   M   GC+ D+ T NTL+
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLI 227



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 15/229 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  AL  F  F ++    L+  T N +I G C    + +A  L   +   G   +V T 
Sbjct: 281 KLEKALEMFKVF-QKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTY 339

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + LI    + GN      ++ EM+       GI  P+   Y S++DG CK   +++ + +
Sbjct: 340 NILIGVFVKEGNFLRAEDIYLEML-----CKGII-PSTVTYNSMVDGFCKQNRLEEARQM 393

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
              M  +G + + +         CK  ++ +   L   M QRGL     TY  L++G+C 
Sbjct: 394 VDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCK 453

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           VG +N A  +F+ M   G  PD  ++  ++ G C    +++ + +  ++
Sbjct: 454 VGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDL 502


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 187/411 (45%), Gaps = 73/411 (17%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P N +TF +LIKG C++G I  A      +   G + +     TLI GL + G     
Sbjct: 123 YHP-NTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAA 181

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           L L + +       G + +PNV  Y ++IDG+CKD+ V+   DL+ EM  KGI+ N +  
Sbjct: 182 LDLLRRVD------GNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTY 235

Query: 137 -----------------------------------------LCKKTKLVEANRLLELMMQ 155
                                                     CK  K+ E   +  +MM+
Sbjct: 236 SALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMK 295

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           +G+ P + TY  L++GYCLV +VN A ++  +M+++G  PD+ SY++LI+G+CK   V+E
Sbjct: 296 QGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDE 355

Query: 216 AMNVSREM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFID 252
           AMN+ +EM              +++G           K+ +EM    V P+  T +  +D
Sbjct: 356 AMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILD 415

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCKN  V + + L   L+       +  +  LI G CK G  E A  +F  L  K    
Sbjct: 416 ALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNI 475

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            V  Y ++IH    +G   +   LL  M++N C  D  T+  ++ S   K+
Sbjct: 476 TVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKD 526



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 117/259 (45%), Gaps = 23/259 (8%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRG 157
           P    +  ++  L K +       L  +M+ +GIN          L       +LM   G
Sbjct: 74  PPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINP--------VLFHFQHPHQLM---G 122

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
            +P   T+T L+ G CL G+++ A+   D++   GF  D   Y  LI+G CK      A+
Sbjct: 123 YHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAAL 182

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           ++ R +  N             V P     +  IDG+CK+ HV +  +L+  +       
Sbjct: 183 DLLRRVDGNL------------VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISP 230

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  +++LI G    G  + A +LFNK+  +N+  DV  +NIL+    K+G++K+   + 
Sbjct: 231 NVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVF 290

Query: 338 LSMEENGCALDVDTFNTLM 356
             M + G   +V T+ +LM
Sbjct: 291 AMMMKQGIKPNVVTYCSLM 309


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 181/346 (52%), Gaps = 26/346 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L++G C +  +++A+Q + +M   GC P+  T +T+I G  ++G +    +L ++
Sbjct: 281 VTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKD 340

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            V     F G + P+   Y SLI+GLC +  +++  +LF E + K +  + +        
Sbjct: 341 AV-----FKG-FVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKG 394

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC++  ++ A +++  M++ G +P I+TY  ++NG C +G ++ A  + +    KG++PD
Sbjct: 395 LCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPD 454

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           VF+++ LI+GYCK   ++ A+ +   M   G            + P+  T N  ++GLCK
Sbjct: 455 VFTFNTLIDGYCKRLKLDSALQLVERMWTYG------------IAPDVITYNSVLNGLCK 502

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G   EV E F  + +  C      +N LI   CK    E AS +  ++    LV D V+
Sbjct: 503 AGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVS 562

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +N LIH   + G +     L   ++E G +   DTFN L+ ++  K
Sbjct: 563 FNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSK 608



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 164/345 (47%), Gaps = 27/345 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T    +K FC+ G    A +L++ ++  GC        T++ GL   G+      L  EM
Sbjct: 143 THTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEM 202

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                  G    P+V  + +++  LC+   V ++  L  ++  +G++AN          L
Sbjct: 203 ------LGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGL 256

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+  +L EA  L+E M    + P + TY  L+ G C   KV  A      M  +G +PD 
Sbjct: 257 CEDGRLEEAVALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDD 315

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           F+Y+ +I+GYCK+  ++EA  + ++ +  GF            VP+  T    I+GLC  
Sbjct: 316 FTYNTIIDGYCKSGMLQEATELLKDAVFKGF------------VPDRVTYCSLINGLCAE 363

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G +   +ELF   +  + +  + ++NSL++G C+ G+   A ++ N++  +    D+  Y
Sbjct: 364 GDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTY 423

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           NI+I+ L K G I     ++      G   DV TFNTL+  + ++
Sbjct: 424 NIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKR 468



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 126/275 (45%), Gaps = 53/275 (19%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-------- 76
           V +NSL+KG C +G I  A Q++ +M   GC P++ T + +I GL + GN++        
Sbjct: 386 VVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMND 445

Query: 77  -----------------------LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
                                  L L    ++V  M  +G    P+V  Y S+++GLCK 
Sbjct: 446 AIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYG--IAPDVITYNSVLNGLCKA 503

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
               +  + F EM  KG   N +         CK  +L EA+ ++  M Q GL P   ++
Sbjct: 504 GKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSF 563

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L++G+C  G ++ A  LF  +  KG+     ++++LI  Y    N++ A  +  EMI 
Sbjct: 564 NTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMIS 623

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
            G+K            P+ +T  I +DGLCK  +V
Sbjct: 624 KGYK------------PDLYTYRILVDGLCKAANV 646



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 13/215 (6%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +A+++   M+  G+ P   T+T  L  +CL G+ +VA+ L  S++ +G      +Y  ++
Sbjct: 124 QAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVV 183

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
            G   + +   A            + +F+EM   +V P+  T N  +  LC+ G V+E  
Sbjct: 184 RGLYAHGHGYNA------------RHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESG 231

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            L   +            N  IRG C+ G  E A  L  ++    +  DVV YN L+  L
Sbjct: 232 ALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAY-VAPDVVTYNTLMRGL 290

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            K+ ++++    L  M   GC  D  T+NT++  +
Sbjct: 291 CKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGY 325



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/180 (19%), Positives = 74/180 (41%), Gaps = 12/180 (6%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y   +  Y   G++  A+  F+ M      P   +Y+ +++        ++A        
Sbjct: 74  YVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQA-------- 125

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                K++  M    V P+  T  + +   C  G     + L  +L    C+     + +
Sbjct: 126 ----HKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCT 181

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           ++RG    G    A  LF+++  +++  DV  +N ++HAL ++G + +   LL  + + G
Sbjct: 182 VVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRG 241


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 203/427 (47%), Gaps = 76/427 (17%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + ++  A+      +   Y+P +  TF +LI G  +     +A  LV +M   GC+P++ 
Sbjct: 166 SKRISDAVALVDQMVEMGYKP-DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV 224

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T  T++ GL + G+++L L L  +M           K NV  + ++ID LCK R V+   
Sbjct: 225 TYGTVVNGLCKRGDIDLALNLLNKME------AARIKANVVIFNTIIDSLCKYRHVEVAV 278

Query: 121 DLFMEMKDKGINANTL--------LC---------------------------------- 138
           DLF EM+ KGI  N +        LC                                  
Sbjct: 279 DLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAF 338

Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K+ KLVEA +L E M+QR ++P   TY  L+NG+C+  +++ A  +F  M  K  +P++
Sbjct: 339 FKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNI 398

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNE 234
            +Y+ LING+CK   VE+ + + REM              I+ GF         + +F +
Sbjct: 399 QTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQ 458

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    V  +  T +I + GLC  G +   + +F  L+ S  EL + I+N++I G CK G 
Sbjct: 459 MVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGK 518

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A +LF  LS K    DVV YN +I  L  +  +++ + L   M+E+G   +  T+NT
Sbjct: 519 VGEAWDLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNT 575

Query: 355 LMISFLQ 361
           L+ + L+
Sbjct: 576 LIRANLR 582



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 158/358 (44%), Gaps = 48/358 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           KV  A+  FG  ++   RP    V FN L+              L ++M T G   ++ T
Sbjct: 63  KVDDAVDLFGDMVKS--RPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYT 120

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
               I    R   ++L L +  +M+  +G     Y+P++    SL++G C  +       
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMK-LG-----YEPDIVTLSSLLNGYCHSK------- 167

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
                               ++ +A  L++ M++ G  P  FT+T L++G  L  K + A
Sbjct: 168 --------------------RISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           +AL D M ++G  PD+ +Y  ++NG CK  +++ A+N            + N+M+   + 
Sbjct: 208 VALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALN------------LLNKMEAARIK 255

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
                 N  ID LCK  HV   ++LF  +E       V  +NSLI   C +G +  AS L
Sbjct: 256 ANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRL 315

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + +  K +  +VV +N LI A  KEG++ +   L   M +     D  T+N L+  F
Sbjct: 316 LSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGF 373



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 140/283 (49%), Gaps = 24/283 (8%)

Query: 92  FGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCK 139
           FG + K    P++  +  L+  + K    +    L  +M+  GI+ +           C+
Sbjct: 71  FGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCR 130

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           +++L  A  +L  MM+ G  P I T + LLNGYC   +++ A+AL D M   G+ PD F+
Sbjct: 131 RSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFT 190

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           ++ LI+G   +    EA+ +  +M+  G +            P+  T    ++GLCK G 
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQ------------PDLVTYGTVVNGLCKRGD 238

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +   + L   +E +  +  V IFN++I   CK+   E+A +LF ++  K +  +VV YN 
Sbjct: 239 IDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNS 298

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           LI+ L   G+    + LL +M E     +V TFN L+ +F ++
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKE 341


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 190/380 (50%), Gaps = 38/380 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R    P N   F+ LI  +  +G +  A  +  KM   G  P+  T  T+I  L ++G
Sbjct: 365 MVRNGIHP-NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            +   ++  ++M++          P    Y SLI  LC     D+ K+L +EM D+GI  
Sbjct: 424 RVEDAMRYFEQMIDER------LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 134 NTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +T+         CK+ +++E+ +L +LM++ G+ P I TY+ L++GYCL GK++ A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF--- 228
            SM   G  PD  +Y+ LINGYCK   +E+A+ + REM              IL G    
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 229 ------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                 K+++  +       E  T NI + GLCKN    E + +F  L +++ +L    F
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N +I    K G  + A +LF  LS   LV DV  Y+++   L ++G +++ + L LSMEE
Sbjct: 658 NIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEE 717

Query: 343 NGCALDVDTFNTLMISFLQK 362
           NGC  +    N+++   LQ+
Sbjct: 718 NGCTANSRMLNSIVRKLLQR 737



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 160/348 (45%), Gaps = 28/348 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++ ++I GF  EG++  A     +M   G  PNV T  ++I  L +   M+  ++
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +   MV NG+        PN   Y S++ G C      +      +M   G+  + +   
Sbjct: 256 VLTSMVKNGV-------MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +  EA ++ + M +RGL P I TY  LL GY   G +     L D M R 
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+ + +S+LI  Y K   V++AM V            F++M+   + P+T T    I
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLV------------FSKMRQQGLNPDTVTYGTVI 416

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK+G V + M  F  +          ++NSLI   C F  ++ A EL  ++  + + 
Sbjct: 417 GILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGIC 476

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            D + +N +I +  KEG++ +   L   M   G   D+ T++TL+  +
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 168/382 (43%), Gaps = 37/382 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ I++ +R ++ + F  L+KG C +    DA  +V ++M   GC PNV + + L+ G
Sbjct: 113 ALGNVIKKGFR-VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L Q M     D GG   P+V  Y ++I+G  K+  +D+    + EM D
Sbjct: 172 LCDENRSQEALELLQMMP----DDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD 227

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  N +        LCK   + +A  +L  M++ G+ P   TY  +++GYC  G+   
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
           AI     M   G  PDV +Y+ L++  CKN    EA  +   M   G K           
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 231 -------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        + + M    + P  +  +I I    K G V + M +F  +       
Sbjct: 348 GYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP 407

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               + ++I   CK G  E A   F ++  + L    + YN LIH+L    +  K   L+
Sbjct: 408 DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 338 LSMEENGCALDVDTFNTLMISF 359
           L M + G  LD   FN+++ S 
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSH 489



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 15/205 (7%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A   ++ +KGF  D  +++ L+ G C +    +AM
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC---KNGHVLEVMELFPTLEISN 274
           ++           +   M     +P  F+ NI + GLC   ++   LE++++ P  +  +
Sbjct: 147 DI-----------VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD-DGGD 194

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V  + ++I G  K G  + A   ++++  + ++ +VV Y+ +I AL K   + K  
Sbjct: 195 CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 335 YLLLSMEENGCALDVDTFNTLMISF 359
            +L SM +NG   +  T+N+++  +
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGY 279


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/374 (31%), Positives = 174/374 (46%), Gaps = 37/374 (9%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  AL   G  ++  Y P + VTF SL+ GFC+   I DA  LV  M   G  PNV  
Sbjct: 114 SRLSLALSILGKMMKLGYDP-SIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVV 172

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI  L + G++N+ L+L  EM     +  G    ++  Y +L+ GLC      Q   
Sbjct: 173 YNTLIDCLCKNGDVNIALELLNEM-----EKKGRLAADLVTYNTLLTGLCYSGEWRQAAR 227

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           +  +M  + IN +            K+  L EA  L + M+Q  + P   TY  L+NG C
Sbjct: 228 ILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLC 287

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----- 228
           + G++  A   FD MA KG  P+V +Y+ LING+CK+  VE+ M + + M   G      
Sbjct: 288 MHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTF 347

Query: 229 ------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                             K IF+ M  C V P+  T  I + GLC NG +   M  F  +
Sbjct: 348 TYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDM 407

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                 L +  +N +I G CK    E A ELF +L  + +  D   Y I+I  L K G  
Sbjct: 408 RSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPR 467

Query: 331 KKENYLLLSMEENG 344
           ++ + L   M+E+G
Sbjct: 468 READELFRRMKEDG 481



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 180/369 (48%), Gaps = 38/369 (10%)

Query: 7    ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
            AL   G  ++  ++P + VT  SL+ GFC     ++A  LV  MA  G  PNV   +T+I
Sbjct: 669  ALALLGKMMKLGFQP-SIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVI 727

Query: 67   TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             GL +  ++N  L    E+  GM   G +   +   Y +LI GLC          L  +M
Sbjct: 728  NGLCKNRDLNNAL----EIFYGMEKKGIV--ADAVTYNTLISGLCNSGRWTDAARLLRDM 781

Query: 127  KDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              + I+ N +          K+  L+EA  L + M++R ++P I TY  L+NG+C+ G++
Sbjct: 782  VKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRL 841

Query: 179  NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---------- 228
              A  +FD M  KG  PDV +Y+ LI G+CK+  VE+ M +  EM   G           
Sbjct: 842  GDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTL 901

Query: 229  -------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                         +K+FN M  C V P+  T NI +D LC NG + + + +   L+ +  
Sbjct: 902  IHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQM 961

Query: 276  ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
            ++ +  +N +I+G C+    + A  LF  L+ K +  D +AY  +I  L + G  ++ + 
Sbjct: 962  DVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADK 1021

Query: 336  LLLSMEENG 344
            L   M+E+G
Sbjct: 1022 LCTRMKEDG 1030



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 175/341 (51%), Gaps = 30/341 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +F  LI  FC       A  L+ KM   G +P++ T  +L+ G  +       + L    
Sbjct: 652 SFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSL---- 707

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL---L 137
           V+ M + G   +PNV  Y ++I+GLCK+R ++   ++F  M+ KGI A     NTL   L
Sbjct: 708 VDSMAELG--LEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGL 765

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +  +A RLL  M++R ++P +  +T L++ +   G +  A  L+  M R+   P++
Sbjct: 766 CNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNI 825

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LING+C    + +A            K +F+ M      P+  T N  I G CK+
Sbjct: 826 LTYNSLINGFCIQGRLGDA------------KHMFDLMVSKGCFPDVVTYNTLITGFCKS 873

Query: 258 GHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
             V + M+LF   E+++  L  + F  N+LI G C+ G   +A ++FN++    +  D+V
Sbjct: 874 KRVEDGMKLF--CEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIV 931

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            YNIL+  L   G+I+K   ++  +++N   +D+ T+N ++
Sbjct: 932 TYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIII 972



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 18/235 (7%)

Query: 11   FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
            +   IRR   P N +T+NSLI GFC++G + DA  +   M + GC P+V T +TLITG  
Sbjct: 813  YKEMIRRSVHP-NILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFC 871

Query: 71   RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
            ++  +   +KL  EM +  G  G     + F Y +LI G C+   ++  + +F  M D G
Sbjct: 872  KSKRVEDGMKLFCEMTH-QGLVG-----DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 925

Query: 131  INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
            +  + +        LC   K+ +A  ++E + +  ++  I TY  ++ G C   KV  A 
Sbjct: 926  VPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAW 985

Query: 183  ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---KKIFNE 234
             LF S+ RKG   D  +Y  +I+G C+N    EA  +   M  +GF   ++I++E
Sbjct: 986  CLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIYDE 1040



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 141/319 (44%), Gaps = 26/319 (8%)

Query: 46  LVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS 105
           L  KM   G   ++ +   LI    R    +L L L  +M+  +G     ++P++   GS
Sbjct: 637 LFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMK-LG-----FQPSIVTLGS 690

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRG 157
           L++G C+     +   L   M + G+  N +        LCK   L  A  +   M ++G
Sbjct: 691 LLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKG 750

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           +     TY  L++G C  G+   A  L   M ++   P+V  ++ LI+ + K  N+ EA 
Sbjct: 751 IVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAK 810

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           N+ +EMI              +V P   T N  I+G C  G + +   +F  +    C  
Sbjct: 811 NLYKEMIRR------------SVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFP 858

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  +N+LI G CK    E   +LF +++ + LV D   YN LIH   + G++     + 
Sbjct: 859 DVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVF 918

Query: 338 LSMEENGCALDVDTFNTLM 356
             M + G   D+ T+N L+
Sbjct: 919 NRMVDCGVPPDIVTYNILL 937



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 117/249 (46%), Gaps = 24/249 (9%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+ ++L  A  +L  MM+ G +P I T+  LL+G+CL  +++ A +L  SM + G+ P+
Sbjct: 110 FCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPN 169

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM---------------ILNGF---------KKIF 232
           V  Y+ LI+  CKN +V  A+ +  EM               +L G           +I 
Sbjct: 170 VVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARIL 229

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            +M    + P+ FT    ID   K G++ E  EL+  +  S+       +NSLI G C  
Sbjct: 230 RDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMH 289

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G    A + F+ ++ K    +VV YN LI+   K  +++    L   M   G   D  T+
Sbjct: 290 GRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTY 349

Query: 353 NTLMISFLQ 361
           NTL+  + Q
Sbjct: 350 NTLIHGYCQ 358



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 131/274 (47%), Gaps = 20/274 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLL----CKKTKLVEANRL 149
           P++  +  ++  + K    D    LF +M++ GI+ +    T+L    C+ ++   A  L
Sbjct: 613 PSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALAL 672

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  MM+ G  P I T   LLNG+C   +   A++L DSMA  G  P+V  Y+ +ING CK
Sbjct: 673 LGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCK 732

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           N ++  A+            +IF  M+   +V +  T N  I GLC +G   +   L   
Sbjct: 733 NRDLNNAL------------EIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRD 780

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     +  V  F +LI    K G    A  L+ ++  +++  +++ YN LI+    +G+
Sbjct: 781 MVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGR 840

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +    ++   M   GC  DV T+NTL+  F + +
Sbjct: 841 LGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSK 874



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 13/211 (6%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+Q    P +  +T LL     + +    I     M   G   D++S+++LI+ +C+   
Sbjct: 56  MVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSR 115

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           +  A+++  +M+  G+             P   T    + G C    + +   L  ++  
Sbjct: 116 LSLALSILGKMMKLGYD------------PSIVTFGSLLHGFCLRNRIHDAFSLVASMVK 163

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-NLVADVVAYNILIHALGKEGQIK 331
           S  E  V ++N+LI   CK G   IA EL N++  K  L AD+V YN L+  L   G+ +
Sbjct: 164 SGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWR 223

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +   +L  M +     DV TF  L+ +F+++
Sbjct: 224 QAARILRDMTKRRINPDVFTFTALIDAFVKQ 254



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 84/217 (38%), Gaps = 53/217 (24%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+NSLI G CM G +  A +    MA+ GC PNV T +TLI G  ++  +   +KL 
Sbjct: 275 NTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLF 334

Query: 83  QEMVNG--MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           Q M     +GD         F Y +LI G C+   +   KD+F  M   G+  + +    
Sbjct: 335 QRMYREGLVGD--------TFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCI 386

Query: 137 ---------------------------------------LCKKTKLVEANRLLELMMQRG 157
                                                  LCK  K+ EA  L   +   G
Sbjct: 387 LLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEG 446

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           + P   TYT ++ G C  G    A  LF  M   G +
Sbjct: 447 VKPDARTYTIMILGLCKNGPRREADELFRRMKEDGII 483


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 190/380 (50%), Gaps = 38/380 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R    P N   F+ LI  +  +G +  A  +  KM   G  P+  T  T+I  L ++G
Sbjct: 365 MVRNGIHP-NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            +   ++  ++M++          P    Y SLI  LC     D+ K+L +EM D+GI  
Sbjct: 424 RVEDAMRYFEQMIDER------LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 134 NTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +T+         CK+ +++E+ +L +LM++ G+ P I TY+ L++GYCL GK++ A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF--- 228
            SM   G  PD  +Y+ LINGYCK   +E+A+ + REM              IL G    
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 229 ------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                 K+++  +       E  T NI + GLCKN    E + +F  L +++ +L    F
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N +I    K G  + A +LF  LS   LV DV  Y+++   L ++G +++ + L LSMEE
Sbjct: 658 NIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEE 717

Query: 343 NGCALDVDTFNTLMISFLQK 362
           NGC  +    N+++   LQ+
Sbjct: 718 NGCTANSRMLNSIVRKLLQR 737



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 160/348 (45%), Gaps = 28/348 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++ ++I GF  EG++  A     +M   G  PNV T  ++I  L +   M+  ++
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +   MV NG+        PN   Y S++ G C      +      +M   G+  + +   
Sbjct: 256 VLTSMVKNGV-------MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +  EA ++ + M +RGL P I TY  LL GY   G +     L D M R 
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+ + +S+LI  Y K   V++AM V            F++M+   + P+T T    I
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLV------------FSKMRQQGLNPDTVTYGTVI 416

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK+G V + M  F  +          ++NSLI   C F  ++ A EL  ++  + + 
Sbjct: 417 GILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGIC 476

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            D + +N +I +  KEG++ +   L   M   G   D+ T++TL+  +
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 168/382 (43%), Gaps = 37/382 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ I++ +R ++ + F  L+KG C +    DA  +V ++M   GC PNV + + L+ G
Sbjct: 113 ALGNVIKKGFR-VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L Q M     D GG   P+V  Y ++I+G  K+  +D+    + EM D
Sbjct: 172 LCDENRSQEALELLQMMP----DDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD 227

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  N +        LCK   + +A  +L  M++ G+ P   TY  +++GYC  G+   
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
           AI     M   G  PDV +Y+ L++  CKN    EA  +   M   G K           
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 231 -------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        + + M    + P  +  +I I    K G V + M +F  +       
Sbjct: 348 GYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP 407

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               + ++I   CK G  E A   F ++  + L    + YN LIH+L    +  K   L+
Sbjct: 408 DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 338 LSMEENGCALDVDTFNTLMISF 359
           L M + G  LD   FN+++ S 
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSH 489



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 15/205 (7%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A   ++ +KGF  D  +++ L+ G C +    +AM
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC---KNGHVLEVMELFPTLEISN 274
           ++           +   M     +P  F+ NI + GLC   ++   LE++++ P  +  +
Sbjct: 147 DI-----------VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD-DGGD 194

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V  + ++I G  K G  + A   ++++  + ++ +VV Y+ +I AL K   + K  
Sbjct: 195 CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 335 YLLLSMEENGCALDVDTFNTLMISF 359
            +L SM +NG   +  T+N+++  +
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGY 279


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 191/411 (46%), Gaps = 73/411 (17%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P + +T  + IKGFC++G I  A     K+   G   +  +  TLI GL + G     
Sbjct: 259 YEP-DTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAA 317

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NA 133
           L+L +       + G + +P+V  Y ++IDG+CKD+ V+   DL+ E   K I       
Sbjct: 318 LELLRR------NDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTY 371

Query: 134 NTLL--------------------------------------CKKTKLVEANRLLELMMQ 155
           N L+                                      CK   + EA  +L +MM+
Sbjct: 372 NALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMK 431

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           + + P + TY+ L++GYCLV +VN A ++F++M+ +G   +V SY+++ING+CK   V+E
Sbjct: 432 QSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDE 491

Query: 216 AMNVSREM--------------ILNGFKK---------IFNEMKLCNVVPETFTCNIFID 252
           AM + +EM              +++G  K         + +EM      P+  T N  +D
Sbjct: 492 AMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILD 551

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK  HV + + L   L+       +  +  L++G C+ G  E A ++F  L  K    
Sbjct: 552 ALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNL 611

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           DV AY ++I     +G   +   LL  MEENGC  D  T+  +++S  +K+
Sbjct: 612 DVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKD 662



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 172/354 (48%), Gaps = 39/354 (11%)

Query: 20  RPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-- 76
           R   DV T+N+LI GFC+ G ++DA  L  KM +    P+V T   L+ G  + GN+   
Sbjct: 363 RIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEA 422

Query: 77  ---LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
              L + + Q +           KP+V  Y SL+DG C    V++ + +F  M  +G+ A
Sbjct: 423 KNVLAMMMKQSI-----------KPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTA 471

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           N           CK   + EA +L + M  + + P + TY+ L++G C  G+++ A+ L 
Sbjct: 472 NVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELV 531

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           D M  +G  PD+ +Y+ +++  CK  +V++A+             +  ++K   + P+  
Sbjct: 532 DEMHYRGQQPDIITYNSILDALCKKHHVDKAIT------------LLTKLKGQGIRPDMN 579

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T  I + GLC++G + +  ++F  L +    L V  +  +I+G C  G+F+ A  L +K+
Sbjct: 580 TYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKM 639

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG--CALDVDTFNTLMI 357
                + D   Y I+I +L ++ +      LL  M   G   AL  D   ++++
Sbjct: 640 EENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLLVALTDDLVASILV 693



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 16/206 (7%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           +++ G  P   T T  + G+CL G+++ A+   D +   GF  D  SY  LING CK   
Sbjct: 254 ILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGE 313

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
            + A+ + R           N+ KL  V P+    N  IDG+CK+ HV +  +L+   E 
Sbjct: 314 TKAALELLRR----------NDGKL--VQPDVVMYNTIIDGMCKDKHVNDAFDLYS--EK 359

Query: 273 SNCELFVEIF--NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
            +  +F ++F  N+LI G C  G  + A +LFNK++ KN++ DV  ++IL+    K+G I
Sbjct: 360 VSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNI 419

Query: 331 KKENYLLLSMEENGCALDVDTFNTLM 356
           K+   +L  M +     DV T+++LM
Sbjct: 420 KEAKNVLAMMMKQSIKPDVVTYSSLM 445



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 131/260 (50%), Gaps = 14/260 (5%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  ++N +I GFC    + +A +L K+M      P+V T  +LI GL ++G ++  L+L 
Sbjct: 472 NVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELV 531

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI----NANTLL- 137
            EM      + G  +P++  Y S++D LCK   VD+   L  ++K +GI    N  T+L 
Sbjct: 532 DEM-----HYRG-QQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILV 585

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+  KL +A ++ E ++ +G N  ++ YT ++ G+C  G  + A+AL   M   G +
Sbjct: 586 KGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCI 645

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +Y ++I    +    + A  + REMI+ G      +  + +++     C      +
Sbjct: 646 PDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLLVALTDDLVASILVRRTWCARLALWV 705

Query: 255 CKNGHVLEVMELFPTLEISN 274
                +L V+EL P  +IS+
Sbjct: 706 TFISLLLRVIELKPGFDISD 725



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + K+  A   F   + + Y  L+   +  +I+GFC +G   +A  L+ KM   GC P+  
Sbjct: 591 SGKLEDARKVFEDLLVKGYN-LDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAK 649

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMV 86
           T + +I  L      ++  KL +EM+
Sbjct: 650 TYEIIILSLFEKDENDMAEKLLREMI 675


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 190/380 (50%), Gaps = 38/380 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R    P N   F+ LI  +  +G +  A  +  KM   G  P+  T  T+I  L ++G
Sbjct: 365 MVRNGIHP-NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            +   ++  ++M++          P    Y SLI  LC     D+ K+L +EM D+GI  
Sbjct: 424 RVEDAMRYFEQMIDER------LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 134 NTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +T+         CK+ +++E+ +L +LM++ G+ P I TY+ L++GYCL GK++ A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF--- 228
            SM   G  PD  +Y+ LINGYCK   +E+A+ + REM              IL G    
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 229 ------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                 K+++  +       E  T NI + GLCKN    E + +F  L +++ +L    F
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N +I    K G  + A +LF  LS   LV DV  Y+++   L ++G +++ + L LSMEE
Sbjct: 658 NIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEE 717

Query: 343 NGCALDVDTFNTLMISFLQK 362
           NGC  +    N+++   LQ+
Sbjct: 718 NGCTANSRMLNSIVRKLLQR 737



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 160/348 (45%), Gaps = 28/348 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++ ++I GF  EG++  A     +M   G  PNV T  ++I  L +   M+  ++
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +   MV NG+        PN   Y S++ G C      +      +M   G+  + +   
Sbjct: 256 VLTSMVKNGV-------MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +  EA ++ + M +RGL P I TY  LL GY   G +     L D M R 
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+ + +S+LI  Y K   V++AM V            F++M+   + P+T T    I
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLV------------FSKMRQQGLNPDTVTYGTVI 416

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK+G V + M  F  +          ++NSLI   C F  ++ A EL  ++  + + 
Sbjct: 417 GILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGIC 476

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            D + +N +I +  KEG++ +   L   M   G   D+ T++TL+  +
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 168/381 (44%), Gaps = 37/381 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ I++ +R ++ + F  L+KG C +    DA  +V ++M   GC PNV + + L+ G
Sbjct: 113 ALGNVIKKGFR-VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L Q M     D GG   P+V  Y ++I+G  K+  +D+    + EM D
Sbjct: 172 LCDENRSQEALELLQMMP----DDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD 227

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  N +        LCK   + +A  +L  M++ G+ P   TY  +++GYC  G+   
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
           AI     M   G  PDV +Y+ L++  CKN    EA  +   M   G K           
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 231 -------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        + + M    + P  +  +I I    K G V + M +F  +       
Sbjct: 348 GYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP 407

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               + ++I   CK G  E A   F ++  + L    + YN LIH+L    +  K   L+
Sbjct: 408 DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 338 LSMEENGCALDVDTFNTLMIS 358
           L M + G  LD   FN+++ S
Sbjct: 468 LEMLDRGICLDTIFFNSIIDS 488



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 15/205 (7%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A   ++ +KGF  D  +++ L+ G C +    +AM
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC---KNGHVLEVMELFPTLEISN 274
           ++           +   M     +P  F+ NI + GLC   ++   LE++++ P  +  +
Sbjct: 147 DI-----------VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD-DGGD 194

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V  + ++I G  K G  + A   ++++  + ++ +VV Y+ +I AL K   + K  
Sbjct: 195 CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 335 YLLLSMEENGCALDVDTFNTLMISF 359
            +L SM +NG   +  T+N+++  +
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGY 279


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 182/346 (52%), Gaps = 26/346 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L++G C +  +++A+Q +++M   GC P+  T +T+I G  +   +    +L ++
Sbjct: 185 VTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKD 244

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            +     F G + P+   Y SLI+GLC +  V++  +LF E + K +  + +        
Sbjct: 245 AI-----FKG-FVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKG 298

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC++  ++ A +++  M++ G +P I+TY  ++NG C +G ++ A  + +    KG++PD
Sbjct: 299 LCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPD 358

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           VF+++ +I+GYCK   ++ A+ +   M + G            + P+  T N  ++GLCK
Sbjct: 359 VFTFNTMIDGYCKRLKLDSALQLVERMWMYG------------IAPDAITYNSVLNGLCK 406

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G   EV E F  + +  C      +N LI   CK    E AS +  ++S   LV D ++
Sbjct: 407 AGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTIS 466

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +N LIH   + G +     L   ++E G +   DTFN L+ ++  K
Sbjct: 467 FNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSK 512



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 162/345 (46%), Gaps = 27/345 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T    IK FC+ G    A +L++ +   GC        T++ GL   G+      L  EM
Sbjct: 47  THTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEM 106

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           +        ++ P+V  + +++  LC+   + ++  L  ++  +G++ N          L
Sbjct: 107 LRR-----DVF-PDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGL 160

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+  +L EA  L+E  M   + P + TY  L+ G C   KV  A      M  +G +PD 
Sbjct: 161 CEGGRLEEAVALVE-SMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDD 219

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           F+Y+ +I+GYCK   ++EA  + ++ I  GF            VP+  T    I+GLC  
Sbjct: 220 FTYNTIIDGYCKRDMLQEATELLKDAIFKGF------------VPDRVTYCSLINGLCAE 267

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V   +ELF   +  + +  + ++NSL++G C+ G+   A ++ N++       D+  Y
Sbjct: 268 GDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTY 327

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           NI+I+ L K G I     ++      G   DV TFNT++  + ++
Sbjct: 328 NIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKR 372



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 157/366 (42%), Gaps = 67/366 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-------- 76
           V +NSL+KG C +G I  A Q++ +M   GC P++ T + +I GL + GN++        
Sbjct: 290 VVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMND 349

Query: 77  -----------------------LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
                                  L L    ++V  M  +G    P+   Y S+++GLCK 
Sbjct: 350 AIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYG--IAPDAITYNSVLNGLCKA 407

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
               +  + F EM  KG   N +         CK  +L EA+ ++  M Q GL P   ++
Sbjct: 408 GKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISF 467

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L++G+C  G ++ A  LF  +  KG+     ++++LI  Y    N++ A  +  EMI 
Sbjct: 468 NTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMIS 527

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV----LEVMELFPTLEISNCELFVEI 281
            G+K            P+ +T  + +DG CK  +V    + + E+     + +   F  +
Sbjct: 528 KGYK------------PDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRV 575

Query: 282 FNSLI---RGCCKFGIFEI------ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
            NSL    R      I  I        E+ + +   +   ++ A  IL+  L K+G I  
Sbjct: 576 LNSLAMNHRVSEAVAIIHIMVRMGVVPEVVDTILSTD-KKEIAAPKILVEELMKKGHISY 634

Query: 333 ENYLLL 338
             Y +L
Sbjct: 635 PTYEVL 640



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 13/219 (5%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +A+++   M+  G+ P   T+T  +  +C+ G+ +VA+ L  S+  +G      +Y  ++
Sbjct: 28  QAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVV 87

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
            G   + +  +A            + +F+EM   +V P+  T N  +  LC+ G ++E  
Sbjct: 88  RGLYAHGHGYDA------------RHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESG 135

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            L   +      +     N  IRG C+ G  E A  L   +    +  DVV YN L+  L
Sbjct: 136 ALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAY-IAPDVVTYNTLMRGL 194

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            K+ ++++    L  M   GC  D  T+NT++  + +++
Sbjct: 195 CKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRD 233



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 15/195 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   I +  RP N +T+N LI+ FC    + +AS ++ +M+  G  P+  + +TLI G  
Sbjct: 417 FEEMILKGCRP-NAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFC 475

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R G+++    L Q++     D  G Y      +  LI        +   + +F EM  KG
Sbjct: 476 RNGDLDGAYLLFQKL-----DEKG-YSATADTFNILIGAYSSKLNMQMAEKIFGEMISKG 529

Query: 131 INANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
              +           CK   +  A   L  M+ +G  P + T+  +LN   +  +V+ A+
Sbjct: 530 YKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAV 589

Query: 183 ALFDSMARKGFMPDV 197
           A+   M R G +P+V
Sbjct: 590 AIIHIMVRMGVVPEV 604


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 190/380 (50%), Gaps = 38/380 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R    P N   F+ LI  +  +G +  A  +  KM   G  P+  T  T+I  L ++G
Sbjct: 365 MVRNGIHP-NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            +   ++  ++M++          P    Y SLI  LC     D+ K+L +EM D+GI  
Sbjct: 424 RVEDAMRYFEQMIDER------LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 134 NTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +T+         CK+ +++E+ +L +LM++ G+ P I TY+ L++GYCL GK++ A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF--- 228
            SM   G  PD  +Y+ LINGYCK   +E+A+ + REM              IL G    
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 229 ------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                 K+++  +       E  T NI + GLCKN    E + +F  L +++ +L    F
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N +I    K G  + A +LF  LS   LV DV  Y+++   L ++G +++ + L LSMEE
Sbjct: 658 NIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEE 717

Query: 343 NGCALDVDTFNTLMISFLQK 362
           NGC  +    N+++   LQ+
Sbjct: 718 NGCTANSRMLNSIVRKLLQR 737



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 160/348 (45%), Gaps = 28/348 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++ ++I GF  EG++  A     +M   G  PNV T  ++I  L +   M+  ++
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +   MV NG+        PN   Y S++ G C      +      +M   G+  + +   
Sbjct: 256 VLTSMVKNGV-------MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +  EA ++ + M +RGL P I TY  LL GY   G +     L D M R 
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+ + +S+LI  Y K   V++AM V            F++M+   + P+T T    I
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLV------------FSKMRQQGLNPDTVTYGTVI 416

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK+G V + M  F  +          ++NSLI   C F  ++ A EL  ++  + + 
Sbjct: 417 GILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGIC 476

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            D + +N +I +  KEG++ +   L   M   G   D+ T++TL+  +
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 167/381 (43%), Gaps = 37/381 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ I++ +  ++ + F  ++KG C +    DA  +V ++M   GC PNV + + L+ G
Sbjct: 113 ALGNVIKKGF-IVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L Q M     D GG   P+V  Y ++I+G  K+  +D+    + EM D
Sbjct: 172 LCDDNRSQEALELLQMMP----DDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD 227

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  N +        LCK   + +A  +L  M++ G+ P   TY  +++GYC  G+   
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
           AI     M   G  PDV +Y+ L++  CKN    EA  +   M   G K           
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 231 -------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        + + M    + P  +  +I I    K G V + M +F  +       
Sbjct: 348 GYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP 407

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               + ++I   CK G  E A   F ++  + L    + YN LIH+L    +  K   L+
Sbjct: 408 DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 338 LSMEENGCALDVDTFNTLMIS 358
           L M + G  LD   FN+++ S
Sbjct: 468 LEMLDRGICLDTIFFNSIIDS 488



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 100/204 (49%), Gaps = 13/204 (6%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A   ++ +KGF+ D  +++ ++ G C +    +AM
Sbjct: 87  VTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAM 146

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL--EISNC 275
           ++           +   M     +P  F+ NI + GLC +    E +EL   +  +  +C
Sbjct: 147 DI-----------VLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDC 195

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              V  + ++I G  K G  + A   ++++  + ++ +VV Y+ +I AL K   + K   
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 336 LLLSMEENGCALDVDTFNTLMISF 359
           +L SM +NG   +  T+N+++  +
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGY 279


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 167/328 (50%), Gaps = 28/328 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLI G C  G  + AS L K+M  +  +P+V T   L+  L + G +   L +  +
Sbjct: 280 VTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGK 339

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+          +P++  Y SLI G+CK  L  ++  L  EM  + I  + +        
Sbjct: 340 MIQIA------MEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDV 393

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CKK  + EA  ++ LM++RGL P + TY  L++GYCL  +++ A  +FD M  KG  PD
Sbjct: 394 FCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPD 453

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V SY++LI GYCK+  ++EA            K++F+EM    + P + T    I GLC+
Sbjct: 454 VLSYNILIKGYCKSERIDEA------------KQLFDEMSHKGLTPNSITHTTLISGLCQ 501

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G      ELF  +    C   +  +++L+ G CK G  + A  LF  L    L  + V 
Sbjct: 502 AGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVI 561

Query: 317 YNILIHALGKEGQIK--KENYLLLSMEE 342
             IL+  + K G+++  KE +  LS+EE
Sbjct: 562 CKILLGGMCKAGKLEDAKELFSSLSIEE 589



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 185/387 (47%), Gaps = 44/387 (11%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           VLG +   G      ++P + +TFN+LI G C+EG I +A + +  + + G +P V T  
Sbjct: 161 VLGKIFKLG------FKP-SIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHT 213

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            ++ GL + G  +  +   ++MV    +      P V  Y  +ID LCK+RLV++  DLF
Sbjct: 214 MIVNGLCKIGKTSAAIVWMKKMVELDCE------PEVVSYSIIIDSLCKNRLVNEAVDLF 267

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
             M+  GI+   +        +C   +  +A+ L + M++  + P + T++ L++  C  
Sbjct: 268 YHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKE 327

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI----------- 224
           G V  A+++F  M +    PD+ +YS LI+G CK+   +E+  +  EM+           
Sbjct: 328 GVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTF 387

Query: 225 ------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                       ++  + I N M    + P   T N  +DG C +  + E  ++F  +  
Sbjct: 388 SIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVN 447

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
             C   V  +N LI+G CK    + A +LF+++S K L  + + +  LI  L + G+   
Sbjct: 448 KGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYA 507

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
              L   M  +GC  D+ T++TL+  F
Sbjct: 508 AKELFKKMGSHGCPPDLITYSTLLSGF 534



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 175/368 (47%), Gaps = 41/368 (11%)

Query: 24  DVTFNSL-IKGFCMEG---NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           D +F++  ++  C  G   N  DA     +M      P +T  + L+  L R  + +  +
Sbjct: 65  DASFDNFAVRDKCKGGSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVV 124

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT-----KDLFMEMKDKGINAN 134
            ++++M     +F G+   +V+    LI+ LC   LV        K   +  K   I  N
Sbjct: 125 SIYRKM-----EFFGV-SCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFN 178

Query: 135 TL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           TL   LC + ++VEA   L+ +M RG  P ++T+T ++NG C +GK + AI     M   
Sbjct: 179 TLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVEL 238

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK--------------------- 230
              P+V SYS++I+  CKN  V EA+++   M   G                        
Sbjct: 239 DCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQA 298

Query: 231 --IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
             +F EM   N+ P+  T +I +D LCK G VLE + +F  +     E  +  ++SLI G
Sbjct: 299 SILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHG 358

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            CK  +++ +S L N++  +N+  DVV ++I +    K+G + +   ++  M E G   +
Sbjct: 359 VCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPN 418

Query: 349 VDTFNTLM 356
           V T+N+LM
Sbjct: 419 VVTYNSLM 426



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 6/104 (5%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T  +LI G C  G    A +L KKM + GC P++ T  TL++G  + G+++  L L 
Sbjct: 488 NSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALF 547

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           + +           KPN      L+ G+CK   ++  K+LF  +
Sbjct: 548 EALKKSQ------LKPNHVICKILLGGMCKAGKLEDAKELFSSL 585


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 190/380 (50%), Gaps = 38/380 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R    P N   F+ LI  +  +G +  A  +  KM   G  P+  T  T+I  L ++G
Sbjct: 365 MVRNGIHP-NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            +   ++  ++M++          P    Y SLI  LC     D+ K+L +EM D+GI  
Sbjct: 424 RVEDAMRYFEQMIDER------LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 134 NTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +T+         CK+ +++E+ +L +LM++ G+ P I TY+ L++GYCL GK++ A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLL 537

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF--- 228
            SM   G  PD  +Y+ LINGYCK   +E+A+ + REM              IL G    
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 229 ------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                 K+++  +       E  T NI + GLCKN    E + +F  L +++ +L    F
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N +I    K G  + A +LF  LS   LV DV  Y+++   L ++G +++ + L LSMEE
Sbjct: 658 NIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEE 717

Query: 343 NGCALDVDTFNTLMISFLQK 362
           NGC  +    N+++   LQ+
Sbjct: 718 NGCTANSRMLNSIVRKLLQR 737



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 161/348 (46%), Gaps = 28/348 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++ ++I GF  EG++  A     +M   G  PNV T +++I  L +   M+  ++
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAME 255

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +   MV NG+        PN   Y S++ G C      +      +M   G+  + +   
Sbjct: 256 VLTSMVKNGV-------MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +  EA ++ + M +RGL P I TY  LL GY   G +     L D M R 
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+ + +S+LI  Y K   V++AM V            F++M+   + P+T T    I
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLV------------FSKMRQQGLNPDTVTYGTVI 416

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK+G V + M  F  +          ++NSLI   C F  ++ A EL  ++  + + 
Sbjct: 417 GILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGIC 476

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            D + +N +I +  KEG++ +   L   M   G   ++ T++TL+  +
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGY 524



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 168/381 (44%), Gaps = 37/381 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ I++ +R ++ + F  L+KG C +    DA  +V ++M   GC PNV + + L+ G
Sbjct: 113 ALGNVIKKGFR-VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L Q M     D GG   P+V  Y ++I+G  K+  +D+    + EM D
Sbjct: 172 LCDENRSQEALELLQMMP----DDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD 227

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  N +        LCK   + +A  +L  M++ G+ P   TY  +++GYC  G+   
Sbjct: 228 RGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
           AI     M   G  PDV +Y+ L++  CKN    EA  +   M   G K           
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 231 -------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        + + M    + P  +  +I I    K G V + M +F  +       
Sbjct: 348 GYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP 407

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               + ++I   CK G  E A   F ++  + L    + YN LIH+L    +  K   L+
Sbjct: 408 DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 338 LSMEENGCALDVDTFNTLMIS 358
           L M + G  LD   FN+++ S
Sbjct: 468 LEMLDRGICLDTIFFNSIIDS 488



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 102/205 (49%), Gaps = 15/205 (7%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A   ++ +KGF  D  +++ L+ G C +    +AM
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC---KNGHVLEVMELFPTLEISN 274
           ++           +   M     +P  F+ NI + GLC   ++   LE++++ P  +  +
Sbjct: 147 DI-----------VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD-DGGD 194

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V  + ++I G  K G  + A   ++++  + ++ +VV YN +I AL K   + K  
Sbjct: 195 CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAM 254

Query: 335 YLLLSMEENGCALDVDTFNTLMISF 359
            +L SM +NG   +  T+N+++  +
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGY 279


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 185/374 (49%), Gaps = 39/374 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P     FN LI  +   G +  A     +M   G RP+V +  T+I  L + G +   + 
Sbjct: 375 PFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVY 434

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
              +MV+ G+        PN+  + SLI GLC      + ++L  EM ++GI+ + +   
Sbjct: 435 HFNQMVSEGLS-------PNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMN 487

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK+ ++VEA    ++++  G+ P + +Y  L++GYC VGK++ +I  FD M   
Sbjct: 488 TIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSI 547

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF--------- 228
           G  PD ++Y+ L+NGY KN  VE+A+ + REM              IL+G          
Sbjct: 548 GLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAA 607

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           ++++ +M          T N  + GLC+N  V E + +F  L     EL V  FN +I  
Sbjct: 608 RELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINA 667

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K G  + A  LF+ +  +  V  V+ Y+++I +  +EG +++ + L LSME+NGCA D
Sbjct: 668 LLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAAD 727

Query: 349 VDTFNTLMISFLQK 362
               N ++   L+K
Sbjct: 728 SHMLNVIIRRLLEK 741



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 158/346 (45%), Gaps = 28/346 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITGL--RRTGNMNLT 78
           + +VT N LIKG C      DA  +V ++M   G  P+V + + LI GL   +     L 
Sbjct: 127 VQNVTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALE 186

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           L LH        D G    PNV  Y ++IDG  K+  VD+   LF EM  +G   + +  
Sbjct: 187 LLLHM-----TADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTY 241

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LCK   + +A  +L+ M  +G+ P   TY  ++ GYC +G++  A+ L   M+ 
Sbjct: 242 SSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSG 301

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  PDV +Y +LI  YCK     EA +V   M+  G K            P +   +I 
Sbjct: 302 SGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQK------------PNSTIYHIL 349

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           + G    G +++V +L   +           FN LI    K G  + A   F ++    L
Sbjct: 350 LHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGL 409

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             DVV+Y+ +IH L K G+++   Y    M   G + ++ +F +L+
Sbjct: 410 RPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLI 455



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 149/337 (44%), Gaps = 51/337 (15%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL---RRTGN-MNLTLKLHQEM 85
           LI+ FC  G +  A          G R    T + LI GL   +RT + M++  +     
Sbjct: 100 LIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMDMVFRR---- 155

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTLLCKKTKLV 144
              M + G  Y P+VF Y +LI GLC ++   +  +L + M  D G N +          
Sbjct: 156 ---MPELG--YTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCS---------- 200

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                          P + +Y+ +++G+   G+V+ A  LFD M  +GF PDV +YS LI
Sbjct: 201 ---------------PNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLI 245

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           +G CK     +AMN +  ++ + F K         V+P T T NI I G C  G + E +
Sbjct: 246 DGLCK----AQAMNKAEAILQHMFDK--------GVMPNTRTYNIMIRGYCSLGQLEEAV 293

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            L   +  S  +  V  +  LI+  CK G    A  +F+ +  K    +   Y+IL+H  
Sbjct: 294 RLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGY 353

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             +G +     LL  M  +G   +   FN L+ ++ +
Sbjct: 354 ATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAK 390



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 151/331 (45%), Gaps = 29/331 (8%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I R   P + +  N+++   C EG + +A      +   G +PNV + +TLI G    G 
Sbjct: 475 INRGIHP-DAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGK 533

Query: 75  MNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK---- 129
           M+ ++K    MV+ G+       +P+ + Y +L++G  K+  V+    L+ EM  K    
Sbjct: 534 MDESIKQFDRMVSIGL-------RPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKF 586

Query: 130 -GINANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
             I +N +L    +  ++V A  L   M+ RG    I TY  +L G C    V+ A+ +F
Sbjct: 587 CAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMF 646

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           + +  K F  DV++++++IN   K   ++EA            K +F+ M L   VP   
Sbjct: 647 EDLRSKEFELDVWTFNIVINALLKVGRIDEA------------KSLFSAMVLRGPVPHVI 694

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T ++ I    + G + E  +LF ++E + C     + N +IR   + G    A     K+
Sbjct: 695 TYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKI 754

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             KN   +     +LI  + ++   K+  +L
Sbjct: 755 DEKNFSVEASTAALLIPIVSEKKYQKEVKFL 785



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 99/230 (43%), Gaps = 16/230 (6%)

Query: 137 LCKKTKLVEA-NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM- 194
           LC   +  +A + +   M + G  P +F+Y  L+ G C+  K   A+ L   M   G   
Sbjct: 139 LCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYN 198

Query: 195 --PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+V SYS +I+G+ K   V++A  +  EMI  GF             P+  T +  ID
Sbjct: 199 CSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFP------------PDVVTYSSLID 246

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK   + +   +   +           +N +IRG C  G  E A  L  K+S   L  
Sbjct: 247 GLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQP 306

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           DVV Y +LI    K G+  +   +  SM   G   +   ++ L+  +  K
Sbjct: 307 DVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATK 356


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 184/354 (51%), Gaps = 26/354 (7%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R Y   + VT+N+LI+G C +   ++A   +++M   GC P+  T +T+I G  +   + 
Sbjct: 251 RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQ 310

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L ++ V     F G + P+   Y SLI+GLC +  V++  +LF E + KGI  + +
Sbjct: 311 EATELLKDAV-----FKG-FVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV 364

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LC +  ++ A +++  M + G +P I TY  ++NG C +G ++ A  + +  
Sbjct: 365 VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDA 424

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             KG++PDVF+++ LI+GYCK   ++ A+ +   M   G            + P+T T N
Sbjct: 425 IMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYG------------IAPDTITYN 472

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             ++GLCK G V EV E F  + +  C      +N LI   C+    E AS++  K+S +
Sbjct: 473 SVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE 532

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            L  D V++N LI+   + G ++    L   +EE G +   DTFNTL+ +F  K
Sbjct: 533 GLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGK 586



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 154/336 (45%), Gaps = 47/336 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM-NLTLKLHQ 83
           V +NSL+KG C++G I  A Q++ +MA  GC P++ T + +I GL + GN+ + T+ ++ 
Sbjct: 364 VVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMND 423

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143
            ++ G       Y P+VF + +LIDG CK                           + KL
Sbjct: 424 AIMKG-------YLPDVFTFNTLIDGYCK---------------------------RLKL 449

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
             A +L+E M + G+ P   TY  +LNG C  GKVN     F  M  KG  P+  +Y++L
Sbjct: 450 DSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNIL 509

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I  +C++  +EEA  V  +M   G              P+  + N  I G C+NG +   
Sbjct: 510 IENFCRSNKMEEASKVIVKMSQEGLH------------PDAVSFNTLIYGFCRNGDLEGA 557

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             LF  LE        + FN+LI          +A ++F+++  K   AD   Y +LI  
Sbjct: 558 YLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDG 617

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             K   + +    L+ M + G    + TF  ++ S 
Sbjct: 618 SCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 653



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 152/359 (42%), Gaps = 46/359 (12%)

Query: 31  IKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG-- 88
           I+ +   G +RDA    ++M  F C P     + ++  L      +   K++  M+    
Sbjct: 60  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 119

Query: 89  ----------MGDFGGIYKPNV-------------FCYGSLIDGLCKDRLVDQTKDLFME 125
                     +  F    +P++               Y +++ GL         + LF +
Sbjct: 120 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 179

Query: 126 MKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M    +  N          LCK+  ++EA  LL  ++QRG++  +FTY   + G C  G+
Sbjct: 180 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 239

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +  A+ L D M R   +PDV +Y+ LI G CK    +EAM+  R M+  G          
Sbjct: 240 LPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG---------- 288

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
              +P+ FT N  IDG CK   V E  EL               + SLI G C  G  E 
Sbjct: 289 --CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVER 346

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A ELFN+   K +  D+V YN L+  L  +G I     ++  M E GC  D+ T+N ++
Sbjct: 347 ALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVI 405



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 73/250 (29%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V+FN+LI GFC  G++  A  L +K+   G      T +TLI       NM++  K+ 
Sbjct: 537 DAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIF 596

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            EM++        ++ + + Y  LIDG CK   VD+    +M                  
Sbjct: 597 DEMLSKG------HRADSYTYRVLIDGSCKTANVDRA---YMH----------------- 630

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           LVE       M+++G  P + T+  ++N   +  +V  A+ +   M + G +P+V     
Sbjct: 631 LVE-------MIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV---- 679

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
                              + ILN  KK            E     I ++ L K GH+  
Sbjct: 680 -------------------DTILNADKK------------EIAAPKILVEDLMKKGHI-- 706

Query: 263 VMELFPTLEI 272
               +PT E+
Sbjct: 707 ---SYPTYEV 713


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 194/419 (46%), Gaps = 73/419 (17%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   +++ Y P   +TFN+LIKG C++G+I  A     K+   G   +  +  TLI GL 
Sbjct: 119 FAKILKKGYHP-TAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLC 177

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT----------- 119
           + G +   L+L + +       G + +PN   Y  +ID +CK +LV+             
Sbjct: 178 KVGRITAALQLLKRVD------GKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKR 231

Query: 120 ------------------------KDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
                                    DLF +MK + IN N           CK+ K+ +A 
Sbjct: 232 ICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAK 291

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L +MM+  + P + TY  L++GYC + KVN A  +FDSMA  G + +V  Y+ ++NG+
Sbjct: 292 VVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGF 351

Query: 208 CKNFNVEEAMNVSREM--------------ILNG---FKKIFNEMKLCNVV------PET 244
           CK   V+EA+N+  EM              +++G     +IF  +KL + +      P  
Sbjct: 352 CKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNI 411

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T +  +D LCKN HV + + L   L+       +  +  LI+G C+ G  E A  +F  
Sbjct: 412 VTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFED 471

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           L  K    DV AY ++I     +G   K   LL  ME+NGC  +  T+  +++S  +K+
Sbjct: 472 LLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKD 530



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 14/209 (6%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           + +++ GFC    + +A  L ++M      PNV T  +LI GL + G +   LKL    V
Sbjct: 344 YTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKL----V 399

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
           + M D G    PN+  Y S++D LCK+  VD+   L   +KD+GI  +          LC
Sbjct: 400 DEMHDRGQ--PPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLC 457

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +  +L +A  + E ++ +G N  ++ YT ++ G+C  G  + A+AL   M   G +P+  
Sbjct: 458 QSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAK 517

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +Y ++I    +    + A  + REMI+ G
Sbjct: 518 TYELVILSLFEKDENDTAEKLLREMIVRG 546



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 120/267 (44%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLLCKKTKLVEANRL---- 149
           P  F +  ++  L K +       L  +M+  GI ++     +L      +  N L    
Sbjct: 59  PPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSI 118

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              ++++G +P   T+  L+ G CL G ++ A+   D +  +GF  D  SY  LING CK
Sbjct: 119 FAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCK 178

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              +  A+ + + +          + KL  V P     N+ ID +CK   V +  +L+  
Sbjct: 179 VGRITAALQLLKRV----------DGKL--VQPNAVMYNMIIDNMCKAKLVNDAFDLYSQ 226

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +        V  +N+LI G         A +LFNK+  +N+  +V  +NIL+    KEG+
Sbjct: 227 MVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGK 286

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           +     +L  M ++    DV T+N+LM
Sbjct: 287 VNDAKVVLAIMMKDDIKPDVVTYNSLM 313



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 14/210 (6%)

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
            L++ +   P  F +  +L+        + A++L   M   G   D F++++LIN +   
Sbjct: 50  HLLLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFS-- 107

Query: 211 FNVEEAMNVSREMILNGFK-KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                      ++ LN     IF ++      P   T N  I GLC  GH+ + +     
Sbjct: 108 -----------QLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDK 156

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +      L    + +LI G CK G    A +L  ++  K +  + V YN++I  + K   
Sbjct: 157 VVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKL 216

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +     L   M       DV T+N L+  F
Sbjct: 217 VNDAFDLYSQMVAKRICPDVFTYNALISGF 246


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 189/404 (46%), Gaps = 72/404 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF +++ G C+EGN+  A + V  +   G   +  T   +I GL + G+ +  L   ++
Sbjct: 97  VTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKK 156

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     +       +V  Y +++DGLCKD +V +  DLF +M  KGI  N          
Sbjct: 157 MEEQNCNL------DVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHG 210

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVI---------------------------------- 162
           LC   +  EA  LL  MM++G+ P +                                  
Sbjct: 211 LCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHN 270

Query: 163 -FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
             TY  ++  +C++ ++  A+ +FD M RKG +P++ +Y+ LI+G+C+  N+ +AM    
Sbjct: 271 VVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLG 330

Query: 222 EMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           EM+ NG                        K++F  M     +P+  TC I +DGL K  
Sbjct: 331 EMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCH 390

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              E M LF  LE  N +L + I++ ++ G C  G    A ELF+ LS K +  DVV YN
Sbjct: 391 FHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYN 450

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           I+I+ L KEG +     LL+ MEENGC  D  T+N  +   L++
Sbjct: 451 IMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRR 494



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 115/242 (47%), Gaps = 26/242 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+NS+I   CM   ++DA ++   M   GC PN+ T ++LI G   T NMN  +   
Sbjct: 270 NVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFL 329

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC---- 138
            EMVN   D      P+V  + +LI G CK       K+LF  M   G   +   C    
Sbjct: 330 GEMVNNGLD------PDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIIL 383

Query: 139 ----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K     EA  L   + +   +  I  Y+ +LNG C  GK+N A+ LF  ++ KG  
Sbjct: 384 DGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVK 443

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            DV +Y+++ING CK   +++A ++  +M  NG              P+  T N+F+ GL
Sbjct: 444 IDVVTYNIMINGLCKEGLLDDAEDLLMKMEENG------------CPPDECTYNVFVQGL 491

Query: 255 CK 256
            +
Sbjct: 492 LR 493



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 12/220 (5%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+    V    +L LM + G+ P I T+T ++NG C+ G V  AI   D +   G+  D
Sbjct: 71  LCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESD 130

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            ++   +ING CK  +   A++  ++M          E + CN+    ++    +DGLCK
Sbjct: 131 RYTRGAIINGLCKVGHSSAALSYLKKM----------EEQNCNLDVTAYSA--VVDGLCK 178

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V E ++LF  +     +  +  +N LI G C F  ++ A+ L   +  K ++ DV  
Sbjct: 179 DGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQT 238

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +N++     K G I +   +   M   G   +V T+N+++
Sbjct: 239 FNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSII 278



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 12/226 (5%)

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
           ++ K      A  L++ M   G+ P + T+  ++N  C +       ++   M + G  P
Sbjct: 35  IVAKMKHYTTAISLIKHMSYIGVKPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEP 94

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
            + +++ ++NG C   NV +A+            +  + +K      + +T    I+GLC
Sbjct: 95  SIVTFTTIVNGLCVEGNVAQAI------------RFVDHLKDMGYESDRYTRGAIINGLC 142

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K GH    +     +E  NC L V  +++++ G CK G+   A +LF++++ K +  ++ 
Sbjct: 143 KVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLF 202

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            YN LIH L    + K+   LL +M   G   DV TFN +   FL+
Sbjct: 203 TYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLK 248



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 14/194 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+++LI GFC  G    A +L   M   G  P++ TC  ++ GL +    +  + L +E
Sbjct: 342 VTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRE 401

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +     D       ++  Y  +++G+C    ++   +LF  +  KG+  + +        
Sbjct: 402 LEKMNSDL------DIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMING 455

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK+  L +A  LL  M + G  P   TY   + G     +++ +      M  KGF  +
Sbjct: 456 LCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRAN 515

Query: 197 VFSYSVLINGYCKN 210
             +  +LIN +  N
Sbjct: 516 ATTTKLLINYFSAN 529


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 176/345 (51%), Gaps = 33/345 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N  T N LI  FC    +  A  ++  +   G +P+  T  TLI GL   G +   L+
Sbjct: 42  PHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQ 101

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  +M       G  ++P+V  YG+LI+GLCKDR + +   LF +M  KGI+ N      
Sbjct: 102 LFDKMT------GEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSS 155

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV---AIALFDSMA 189
               LC      EA RL   M+ R + P   T+  L++  C  G + +   A+ LF+ M+
Sbjct: 156 LIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMS 215

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
           ++G +PD  +Y+ LI+G C    + +A+             +F+EM +   +P+  T  I
Sbjct: 216 QQGLIPDTVTYNTLIHGLCHVGRLRDAI------------ALFHEMVVYGQIPDLVTYRI 263

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
             D LCKN  + E M L   +E +N +  + I++ ++ G C+ G  E A +LF+KLS K 
Sbjct: 264 LFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKG 323

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           L  DV  Y I+I+ L ++G + + + L   M+EN    D+++++T
Sbjct: 324 LHPDVRTYTIMINGLCQQGLLAEASKLFGEMDEN----DIESYST 364



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 153/323 (47%), Gaps = 46/323 (14%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A    G  ++  Y+P +  TF +LI+G C+EG I +A QL  KM   G +P+V T  TLI
Sbjct: 64  AFSVLGDILKLGYQP-STATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLI 122

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL +   +   L L  +M+       GI  PN F Y SLI GLC      +   LF  M
Sbjct: 123 NGLCKDRQLTEALSLFSDMLAK-----GI-SPNNFTYSSLIHGLCILGHWKEAIRLFYAM 176

Query: 127 KDKGINANTL--------LCKKTKLV---EANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
             + I  + L        LCK+  +    +A  L E M Q+GL P   TY  L++G C V
Sbjct: 177 IHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHV 236

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM------------------ 217
           G++  AIALF  M   G +PD+ +Y +L +  CKN  + EAM                  
Sbjct: 237 GRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIY 296

Query: 218 -----NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                 + R   L   + +F+++    + P+  T  I I+GLC+ G + E  +LF  ++ 
Sbjct: 297 SIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDE 356

Query: 273 SNCELFVEIFNSLIRGCCKFGIF 295
           ++    +E +++  R   K GIF
Sbjct: 357 ND----IESYSTFSRNAFK-GIF 374



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 128/293 (43%), Gaps = 34/293 (11%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  +  L+  + + +       L+ +M   GI  NT          C   +L  A  +
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +++ G  P   T+T L+ G C+ GK+  A+ LFD M  +GF PDV +Y  LING CK
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127

Query: 210 NFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFT 246
           +  + EA+++  +M+  G                         ++F  M    ++P+  T
Sbjct: 128 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 187

Query: 247 CNIFIDGLCKNGHVL---EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
            N  +D LCK G +    + M LF  +           +N+LI G C  G    A  LF+
Sbjct: 188 FNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFH 247

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++     + D+V Y IL   L K  ++ +   LL  +E      D+  ++ +M
Sbjct: 248 EMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVM 300


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 178/378 (47%), Gaps = 64/378 (16%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
            G  I+    P N +TF++LI GFC+EG I  A +L   M   G +PNV +   +I GL 
Sbjct: 149 LGKIIKLGLEP-NVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLC 207

Query: 71  RTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
           R G     +KL + M V G        +P+V  Y +++D LCKDRLV++   +F +MK  
Sbjct: 208 RVGKTTEVIKLLEHMKVVGC-------EPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGT 260

Query: 130 GINANT-------------------------------------------LLCKKTKLVEA 146
           GI                                               ++CK+ ++ EA
Sbjct: 261 GILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEA 320

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             +L+ M + G+ P + TY  L+NGYCL  +V  A  +F+ M  KG MPDVFS+S+L+NG
Sbjct: 321 RVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNG 380

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           YCK   ++EA            K++F+EM    ++P+T + N  I GLC+    LE  EL
Sbjct: 381 YCKAKRIDEA------------KQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEEL 428

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
           F  +  +     +  ++ L+    K G  + A  LF  +    L  D+V YNI+I  + K
Sbjct: 429 FKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCK 488

Query: 327 EGQIKKENYLLLSMEENG 344
            G+ K    L   +   G
Sbjct: 489 YGKFKDARELFAELSVKG 506



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 135/267 (50%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  +G L   L + +       L  +M+  GI+ + L         C+   +     +
Sbjct: 89  PSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSV 148

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +++ GL P + T++ L+NG+C+ GK+  AI LFD M  +G+ P+V SYS++I G C+
Sbjct: 149 LGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCR 208

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                E +            K+   MK+    P+    N  +D LCK+  V E + +F  
Sbjct: 209 VGKTTEVI------------KLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCK 256

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           ++ +     V  + SLI G    G ++ A  L N++   N++ D+VA+++LI  + KEG+
Sbjct: 257 MKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGE 316

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           + +   +L +M E G   DV T+NTLM
Sbjct: 317 VSEARVILKTMTEMGVEPDVATYNTLM 343



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 140/333 (42%), Gaps = 47/333 (14%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           LI  FC   ++     ++ K+   G  PNV T  TLI G    G +   ++L   MV   
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMV--- 188

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRL 149
                 YKPNV  Y  +I G                           LC+  K  E  +L
Sbjct: 189 ---ARGYKPNVHSYSIIIKG---------------------------LCRVGKTTEVIKL 218

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           LE M   G  P +  Y  +++  C    VN A+ +F  M   G +P V +Y+ LI+G   
Sbjct: 219 LEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRN 278

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
               +EA              + NEMK  N++P+    ++ ID +CK G V E   +  T
Sbjct: 279 LGRWKEAFG------------LLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKT 326

Query: 270 LEISNCELFVEIFNSLIRG-CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
           +     E  V  +N+L+ G C +  + E A ++F  +  K  + DV +++IL++   K  
Sbjct: 327 MTEMGVEPDVATYNTLMNGYCLRMEVVE-ARKVFEVMISKGRMPDVFSFSILVNGYCKAK 385

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +I +   L   M   G   D  ++NTL+    Q
Sbjct: 386 RIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQ 418



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 23/205 (11%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +V+ A   F   I +   P  DV +F+ L+ G+C    I +A QL  +M   G  P+  +
Sbjct: 351 EVVEARKVFEVMISKGRMP--DVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVS 408

Query: 62  CDTLITGL---RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ 118
            +TLI+GL   RR           +E+   M   G  Y PN+  Y  L+D L K   +DQ
Sbjct: 409 YNTLISGLCQARRPLEA-------EELFKDMHSNG--YPPNLVTYSILLDCLSKQGYLDQ 459

Query: 119 TKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
              LF  M++ G+  + +        +CK  K  +A  L   +  +GL P  +  TP ++
Sbjct: 460 AMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTID 519

Query: 171 GYCLVGKVNVAIALFDSMARKGFMP 195
           G C  G ++ A   F  M +    P
Sbjct: 520 GVCKGGLLDEAHKAFRQMEKDDCSP 544


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 192/384 (50%), Gaps = 40/384 (10%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
            G  ++  Y P N +T+ +L+KG C++G ++       K+     + N  +  TL+ GL 
Sbjct: 68  LGKILKLGYXP-NTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLC 126

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           +TG     +KL + M+          +PNV  Y ++IDGLCKD+LV++  DL+ EM  + 
Sbjct: 127 KTGETRCAIKLLR-MIEDRST-----RPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDARE 180

Query: 131 I-----NANTLLCK---KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           I       NTL+C      +L+ A  LL  M+ + +NP ++T++ L++  C  GK   A 
Sbjct: 181 IFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKN--AK 238

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGF 228
            +F +M + G  P+V+SY+++ING CK   V+EAMN+ REM+              ++G 
Sbjct: 239 QIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGL 298

Query: 229 KK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
            K         + NEM       +  T    +D LCKN ++ +   LF  ++    +  +
Sbjct: 299 CKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTM 358

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + +LI G CK G  + A ELF  L  K    DV  Y ++I  L KEG   +   +   
Sbjct: 359 YTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSK 418

Query: 340 MEENGCALDVDTFNTLMISFLQKE 363
           ME+NGC  +  TF  ++ S  +K+
Sbjct: 419 MEDNGCIPNAVTFEIIIRSLFEKD 442



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 142/298 (47%), Gaps = 28/298 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+N+LI  FC+ G +  A  L+ +M      P+V T   LI  L + G      K  
Sbjct: 184 NVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG------KNA 237

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +++ + M   G    PNV+ Y  +I+GLCK + VD+  +L  EM  K +  +T+      
Sbjct: 238 KQIFHAMVQMG--VNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLI 295

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++  A  L+  M  RG    + TYT LL+  C    ++ A ALF  M  +G  
Sbjct: 296 DGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQ 355

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P +++Y+ LI+G CK   ++ A  + + +++ G          C +   T+T  + I GL
Sbjct: 356 PTMYTYTALIDGLCKGGRLKNAQELFQHLLVKG----------CCIDVWTYT--VMISGL 403

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           CK G   E + +   +E + C      F  +IR   +    + A +L +++  K L+ 
Sbjct: 404 CKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLG 461



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 119/239 (49%), Gaps = 29/239 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +++GA       I +   P  DV TF+ LI   C EG  ++A Q+   M   G  PNV +
Sbjct: 200 QLMGAFSLLHEMILKNINP--DVYTFSILIDALCKEG--KNAKQIFHAMVQMGVNPNVYS 255

Query: 62  CDTLITGL----RRTGNMNLTLK-LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
            + +I GL    R    MNL  + LH+ MV           P+   Y SLIDGLCK   +
Sbjct: 256 YNIMINGLCKCKRVDEAMNLLREMLHKNMV-----------PDTVTYNSLIDGLCKSGRI 304

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
               +L  EM  +G  A+ +        LCK   L +A  L   M +RG+ P ++TYT L
Sbjct: 305 TSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTAL 364

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           ++G C  G++  A  LF  +  KG   DV++Y+V+I+G CK    +EA+ +  +M  NG
Sbjct: 365 IDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNG 423



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 100/208 (48%), Gaps = 13/208 (6%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           +G+   + T + L+N +C +G++  + +L   + + G+ P+  +++ L+ G C    V++
Sbjct: 39  KGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKK 98

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
            ++   +++   F+                +    ++GLCK G     ++L   +E  + 
Sbjct: 99  LLHFHDKVVAQAFQ------------TNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRST 146

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              V +++++I G CK  +   A +L++++  + +  +V+ YN LI A    GQ+     
Sbjct: 147 RPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFS 206

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQKE 363
           LL  M       DV TF +++I  L KE
Sbjct: 207 LLHEMILKNINPDVYTF-SILIDALCKE 233


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 185/374 (49%), Gaps = 39/374 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL D  FN LI+ +     +  A     +M   G  PNV T  T+I  L + G +   + 
Sbjct: 292 PLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVS 351

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
              +MV+ G+        P++  + SLI GLC      + + L  EM ++GI+ N +   
Sbjct: 352 HFSQMVSEGL-------SPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLN 404

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK+ +++EA+   + ++  G+ P + +YT L++GYCL GK++ +I L   M   
Sbjct: 405 TIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSI 464

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF--------- 228
           G  PD  +YS L+NGYCKN  V++A+ + REM              IL+G          
Sbjct: 465 GLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAA 524

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           ++ + ++    +     T NI + GLC+N  V E + +F  L     +L V  FN +I G
Sbjct: 525 REFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVG 584

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K G    A  LF+ +    LV D + Y ++I +  +EG +++ + L LSME+NGC  +
Sbjct: 585 LLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTAN 644

Query: 349 VDTFNTLMISFLQK 362
             T N ++   L+K
Sbjct: 645 SRTLNAIVRKLLEK 658



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 160/345 (46%), Gaps = 41/345 (11%)

Query: 26  TFNSLIKGFC--------MEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGLRRTGNM 75
           TF  LI+ FC        +E   R +   V  MA  G  C PNV + + +I GL + G +
Sbjct: 96  TFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGLFKEGEV 155

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           +    L  EM+ G G     + PN+  Y S+IDGLCK + +D+ + +  +M DKG     
Sbjct: 156 DKAYTLFHEML-GQG-----FPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKG----- 204

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
                 +L EA RLL+ M   GL P + TY+ L++ YC +G+   A  +FDSM R+G  P
Sbjct: 205 ------QLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNP 258

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ETFTCNIFIDGL 254
           D ++Y  L++GY     + +  ++   MI +G             +P E    NI I   
Sbjct: 259 DAYTYRTLLHGYATKGALVDMHDLLALMIQDG-------------IPLEDHVFNILIRAY 305

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            KN  + + M  F  +        V  + ++I   CK G  E A   F+++  + L  D+
Sbjct: 306 AKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDI 365

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + +  LIH L   G+ KK   L   M   G   +    NT+M S 
Sbjct: 366 ITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSL 410



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 177/413 (42%), Gaps = 78/413 (18%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N +++N +I G   EG +  A  L  +M   G  PN+ T +++I GL +   M+    
Sbjct: 136 PPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEA 195

Query: 81  LHQEMVNGMGDF-----------GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
           + Q+M +  G             GG  +P+V  Y  LID  CK     + +++F  M  +
Sbjct: 196 VLQQMFD-KGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRR 254

Query: 130 GINAN-----TLL---CKKTKLVEANRLLELMM--------------------------- 154
           G N +     TLL     K  LV+ + LL LM+                           
Sbjct: 255 GQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKA 314

Query: 155 --------QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
                   Q+G +P + TYT +++  C  G+V  A++ F  M  +G  PD+ +++ LI+G
Sbjct: 315 MTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHG 374

Query: 207 YCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVPE 243
            C     ++   +S EMI  G                           F+++    V P+
Sbjct: 375 LCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPD 434

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             +  I IDG C +G + E ++L   +           +++L+ G CK G  + A  L+ 
Sbjct: 435 VVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYR 494

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++  K++  + + YNI++H L   G++       + + ++G  L ++T+N ++
Sbjct: 495 EMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVL 547



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 163/396 (41%), Gaps = 73/396 (18%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+ AF    ++ + P N VT+ ++I   C  G + DA     +M + G  P++ T  +LI
Sbjct: 314 AMTAFIEMRQKGFSP-NVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLI 372

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   G      KL  EM+N      GI+ PN     +++D LCK+  V +  D F ++
Sbjct: 373 HGLCTIGEWKKVEKLSFEMINR-----GIH-PNAIFLNTIMDSLCKEGRVLEAHDFFDQI 426

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G+  + +         C   K+ E+ +LL  M+  GL P   TY+ LLNGYC  G+V
Sbjct: 427 IHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRV 486

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGY------------------------------- 207
           + A+AL+  M  K   P+  +Y+++++G                                
Sbjct: 487 DDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIV 546

Query: 208 ----CKNFNVEEAMNV-----SREMILN------------------GFKKIFNEMKLCNV 240
               C+N  V+EA+ +     S+E  L                     K +F+ +    +
Sbjct: 547 LGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGL 606

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           VP+     + I    + G + E  ELF ++E + C       N+++R   + G    A  
Sbjct: 607 VPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGT 666

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
              K+  K    +     +LI  + +    K+  +L
Sbjct: 667 YLTKIDEKEYSVEASTAVLLISIVSERKYQKEVKFL 702



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 41/247 (16%)

Query: 146 ANRLLELMMQRGLNPVIF---TYTPLLNGYCLVGKVNVAI--------ALFDSMARKGF- 193
           A  L   M Q G+N +     T+  L+  +C VG ++ A+        A    MA  G+ 
Sbjct: 75  AVSLFNTMAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYN 134

Query: 194 -MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+V SY+++ING  K   V++A  +  EM+  GF             P   T N  ID
Sbjct: 135 CPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFP------------PNIVTYNSVID 182

Query: 253 GLCK----------------NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
           GLCK                 G + E + L   +     +  V  ++ LI   CK G   
Sbjct: 183 GLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCT 242

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A  +F+ +  +    D   Y  L+H    +G +   + LL  M ++G  L+   FN L+
Sbjct: 243 EARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILI 302

Query: 357 ISFLQKE 363
            ++ + E
Sbjct: 303 RAYAKNE 309


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 170/343 (49%), Gaps = 27/343 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI  F     + +A +L+++M   GC PN+ T + L+  L +   +     + 
Sbjct: 178 NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVV 237

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M+ G       + PNV  + SL+DG CK   VD  + L   M  KG+  N +      
Sbjct: 238 KKMIEGG------FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALI 291

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  K +EA  +LE M  RG+ P  FTY+ L++G C   K+  A  +   MA  G  
Sbjct: 292 DGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCT 351

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV  YS +I+ +CK+  + EA            +K   EM+     P+  T N  IDGL
Sbjct: 352 PDVVVYSSIIHAFCKSGKLLEA------------QKTLQEMRKQRKSPDVVTYNTVIDGL 399

Query: 255 CKNGHVLEVMELFPTLEISNCELF-VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           CK G + E   +   ++ S   L  V  ++++I G CK  +   A +L +++       D
Sbjct: 400 CKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPD 459

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           VV Y  +I  L K G++++  YLL  M+  GCA +V T+ TL+
Sbjct: 460 VVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLI 502



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 169/345 (48%), Gaps = 27/345 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+N L+   C    +  A  +VKKM   G  PNV T ++L+ G  + GN++   K
Sbjct: 211 PPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARK 270

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           L   MV  GM       +PNV  Y +LIDGLCK +   + K++  EMK +G+  +     
Sbjct: 271 LLGIMVAKGM-------RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYS 323

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  K+ EA ++L  M   G  P +  Y+ +++ +C  GK+  A      M ++
Sbjct: 324 ALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQ 383

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
              PDV +Y+ +I+G CK   + EA  +  +M  +G           +V+P+  T +  I
Sbjct: 384 RKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESG-----------DVLPDVVTYSTVI 432

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +GLCK+  ++E  +L   +  + C   V  + ++I G CK G  E A  L   +      
Sbjct: 433 NGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCA 492

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +VV Y  LI  L K  ++ +   ++  M   GC  ++ T+NT++
Sbjct: 493 PNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMV 537



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 174/352 (49%), Gaps = 29/352 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +TFNSL+ GFC  GN+ DA +L+  M   G RPNV T   LI GL ++       ++ 
Sbjct: 248 NVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVL 307

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
           +EM        G+  P+ F Y +LI GLCK   +++ + +   M   G   + ++     
Sbjct: 308 EEMKTR-----GV-TPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 361

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-F 193
              CK  KL+EA + L+ M ++  +P + TY  +++G C +GK+  A  + + M   G  
Sbjct: 362 HAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDV 421

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PDV +YS +ING CK+  + EA  +   M   G          CN  P+  T    IDG
Sbjct: 422 LPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAG----------CN--PDVVTYTTIIDG 469

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G + E   L   ++ + C   V  + +LI G CK    + A  +  ++       +
Sbjct: 470 LCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 529

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEEN--GCALDVDTFNTLMISFLQKE 363
           +V YN +++ L   G+IK+   L+  M++    C+ D  T+ T++ + +  +
Sbjct: 530 LVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSD 581



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 143/291 (49%), Gaps = 29/291 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+++LI G C    I +A Q++++MA  GC P+V    ++I    ++G +    K  QEM
Sbjct: 321 TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM 380

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTL--- 136
                       P+V  Y ++IDGLCK   + + + +  +M++ G      +  +T+   
Sbjct: 381 RKQR------KSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVING 434

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   LVEA +LL+ M + G NP + TYT +++G C  G++  A  L   M R G  P+
Sbjct: 435 LCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPN 494

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ LI+G CK   V+EA            +++  EM+     P   T N  ++GLC 
Sbjct: 495 VVTYTTLISGLCKARKVDEA------------ERVMEEMRNAGCPPNLVTYNTMVNGLCV 542

Query: 257 NGHVLEVMELFPTLE--ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           +G + E  +L   ++   + C      + +++       + + A +L  ++
Sbjct: 543 SGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 145/334 (43%), Gaps = 48/334 (14%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++NSL++        R+A  L +      C P+V + + +I+G    G+++  L+L +EM
Sbjct: 79  SWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEM 138

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
            +        + P+ F +  +I  +     +D   D    M                   
Sbjct: 139 KSAG------FAPDAFTHTPIITAMANAGDLDGAMDHLRSM------------------- 173

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
                      G +P + TYT L+  +    K+  A+ L + M  +G  P++ +Y+VL++
Sbjct: 174 -----------GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVD 222

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
             CK   V  A +V ++MI  GF             P   T N  +DG CK G+V +  +
Sbjct: 223 ALCKLSMVGAAQDVVKKMIEGGF------------APNVMTFNSLVDGFCKRGNVDDARK 270

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L   +        V  +++LI G CK   F  A E+  ++  + +  D   Y+ LIH L 
Sbjct: 271 LLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLC 330

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           K  +I++   +L  M  +GC  DV  +++++ +F
Sbjct: 331 KADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAF 364



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 15/206 (7%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G +   F++  LL       K   A  LF S       PDV SY+++I+G+C   ++  A
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           + +  EM   GF             P+ FT    I  +   G +   M+   ++    C+
Sbjct: 132 LELLEEMKSAGF------------APDAFTHTPIITAMANAGDLDGAMDHLRSM---GCD 176

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             V  + +LI    +    E A +L  ++  +    ++V YN+L+ AL K   +     +
Sbjct: 177 PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 236

Query: 337 LLSMEENGCALDVDTFNTLMISFLQK 362
           +  M E G A +V TFN+L+  F ++
Sbjct: 237 VKKMIEGGFAPNVMTFNSLVDGFCKR 262



 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKM--ATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           P N VT+N+++ G C+ G I++A QLV++M      C P+  T  T++  L  +  +   
Sbjct: 527 PPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEA 586

Query: 79  LKLHQEM 85
            +L ++M
Sbjct: 587 EQLLEQM 593


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 186/374 (49%), Gaps = 39/374 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P     FN LI  +   G +  A     +M   G RP+V +  T+I  L +TG +   + 
Sbjct: 372 PFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVY 431

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
              +MV+ G+        PN+  + SLI GLC      + ++L  EM ++GI+ + +   
Sbjct: 432 HFNQMVSEGLS-------PNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMN 484

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK+ ++VEA    ++++  G+ P + +Y  L++GYC VGK++ +I   D M   
Sbjct: 485 TIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSI 544

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF--------- 228
           G  PD ++Y+ L+NGY KN  VE+A+ + REM              +L+G          
Sbjct: 545 GLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAA 604

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           ++++ +M          T N  + GLC+N  V E + +F  L     EL V  F+ +I  
Sbjct: 605 RELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINA 664

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K G  + A  LF+ +  +  V DV+ Y+++I +  +EG +++ + L LSME+NGCA D
Sbjct: 665 LLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAAD 724

Query: 349 VDTFNTLMISFLQK 362
               N ++   L+K
Sbjct: 725 SHMLNIIVRRLLEK 738



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 161/344 (46%), Gaps = 24/344 (6%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           + +VT N LIKG C      DA  +V ++M   G  P+V + + LI GL         L+
Sbjct: 124 VQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALE 183

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L   +++   D G    PNV  Y ++IDG  K+  VD+   LF EM  +G+  + +    
Sbjct: 184 L---LIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNS 240

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK   + +A  +L+ M  +G+ P   TY  ++ GYC +G++  A+ L   M+  G
Sbjct: 241 LIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSG 300

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PDV +YS+LI  YCK     EA +V   M+  G K            P +   +I + 
Sbjct: 301 LQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQK------------PNSTIYHILLH 348

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G    G +++V +L   +           FN LI    K G  + A   F ++    L  
Sbjct: 349 GYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRP 408

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           DVV+Y+ +IH L K G+++   Y    M   G + ++ +F +L+
Sbjct: 409 DVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLI 452



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 144/337 (42%), Gaps = 51/337 (15%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL----RRTGNMNLTLKLHQEM 85
           LI+ FC  G +  A          G R    T + LI GL    R    M++  +     
Sbjct: 97  LIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRR---- 152

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTLLCKKTKLV 144
              M + G  Y P+VF Y +LI GLC ++   +  +L + M  D G N +          
Sbjct: 153 ---MPELG--YTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCS---------- 197

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                          P + +Y  +++G+   G+V+ A  LF  M  +G  PDV +Y+ LI
Sbjct: 198 ---------------PNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLI 242

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           +G CK   +++A+ + + M   G            V+P+T T NI I G C  G + E +
Sbjct: 243 DGLCKAQAMDKAVAILQHMFDKG------------VMPDTRTYNIMIRGYCSLGQLEEAV 290

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            L   +  S  +  V  ++ LI+  CK G    A  +F+ +  K    +   Y+IL+H  
Sbjct: 291 RLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGY 350

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             +G +     LL  M  +G   +   FN L+ ++ +
Sbjct: 351 ATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAK 387



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 16/230 (6%)

Query: 137 LCKKTKLVEA-NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM- 194
           LC   +  +A + +   M + G  P +F+Y  L+ G C+  K   A+ L   M   G   
Sbjct: 136 LCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYN 195

Query: 195 --PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+V SY+ +I+G+ K   V++A  +  EM+  G              P+  T N  ID
Sbjct: 196 CSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLP------------PDVVTYNSLID 243

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK   + + + +   +           +N +IRG C  G  E A  L  K+S   L  
Sbjct: 244 GLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQP 303

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           DVV Y++LI    K G+  +   +  SM   G   +   ++ L+  +  K
Sbjct: 304 DVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATK 353



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 27/207 (13%)

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE--------------EAMNVSREMIL 225
           +A++LF++M R G         +LI  +C    ++                 NV+   ++
Sbjct: 74  LAVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLI 133

Query: 226 NGF----------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-- 273
            G             +F  M      P+ F+ N  I GLC      E +EL   +     
Sbjct: 134 KGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGG 193

Query: 274 -NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
            NC   V  +N++I G  K G  + A  LF+++  + L  DVV YN LI  L K   + K
Sbjct: 194 YNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDK 253

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
              +L  M + G   D  T+N ++  +
Sbjct: 254 AVAILQHMFDKGVMPDTRTYNIMIRGY 280


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 182/365 (49%), Gaps = 28/365 (7%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GA+        R YRP N +T+N+++  FC   ++  A Q+++ M   GC P+     T+
Sbjct: 353 GAVELVRKMTERGYRP-NAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTI 411

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF-- 123
           I+G  + G +     L ++M+          +P+V C  +LID LCK   +D  ++L   
Sbjct: 412 ISGFCKAGKLREAHDLLEQMIRRG------CRPDVACLSTLIDALCKAAAIDSAQELLRM 465

Query: 124 ---MEMKDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
              M+     +  + L   LCK  +L EA   L++M++    P + TY  +++G C   +
Sbjct: 466 SIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRR 525

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +N A  LFD M   G MPDV +YS++I+ +CK+ N++ A             K+   MK 
Sbjct: 526 INDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAF------------KMLERMKE 573

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
              VP+  T +  I+GLCK G V +  ++F  +    C   +  +N+LI G CK    E 
Sbjct: 574 AKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQ 633

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A+E+   +  ++   D + Y  LI+ L    ++++   +L  M++ GC  D  T+ TL+ 
Sbjct: 634 AAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLR 693

Query: 358 SFLQK 362
           + LQK
Sbjct: 694 A-LQK 697



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 179/371 (48%), Gaps = 38/371 (10%)

Query: 18   CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
            C  P N  TF  LI G C  G+I  A +L+K+M   G   NV   + +I GL     ++ 
Sbjct: 872  CCSP-NMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDS 930

Query: 78   TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
             L+L +EM     +  G   P+VF Y +++D L K   VD    L  +M  KG + N + 
Sbjct: 931  ALELFKEM-----EESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVT 985

Query: 137  -------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                   LCK  KL EA  LL+ M + G +P I TY  +++G+C +G+++ A  L + M 
Sbjct: 986  YSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMV 1045

Query: 190  RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-------------------- 229
              G  P+V +Y+VL++ +CK    E+A+ +   M+  G+                     
Sbjct: 1046 DGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVE 1105

Query: 230  ---KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
               ++ + M     VP   + N  I GLCK   V E + L   +  +NC   +  FN++I
Sbjct: 1106 RACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTII 1165

Query: 287  RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM-EENGC 345
               CK    +IA ELFN +       ++V YN L+H L K  +  +  YLL  M  + GC
Sbjct: 1166 DAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGC 1225

Query: 346  ALDVDTFNTLM 356
            + D+ T+NT++
Sbjct: 1226 SPDIITYNTVI 1236



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 171/348 (49%), Gaps = 27/348 (7%)

Query: 21   PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
            P +  T+++++      G + DA +LV+ M + GC PNV T  +L+ GL + G ++    
Sbjct: 945  PPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATA 1004

Query: 81   LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            L Q M            PN+  Y ++IDG CK   +D+   L  EM D G   N +    
Sbjct: 1005 LLQRMTRSG------CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTV 1058

Query: 137  ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 CK  K  +A  L+E+M+++G  P +FTY  LL+ +C   +V  A  L  SM +KG
Sbjct: 1059 LLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKG 1118

Query: 193  FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             +P+V SY+ +I G CK   V E + +  +M+ N            N VP+  T N  ID
Sbjct: 1119 CVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSN------------NCVPDIVTFNTIID 1166

Query: 253  GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN-LV 311
             +CK   V    ELF  ++ S C   +  +NSL+ G CK   F+ A  L  +++ K    
Sbjct: 1167 AMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCS 1226

Query: 312  ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             D++ YN +I  L K  ++ +   L L M  +G A D  T++ ++ S 
Sbjct: 1227 PDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSL 1274



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 169/342 (49%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  ++N+++ GFC    + +A  L+++M T GC P+V +  T+I GL +   ++   ++ 
Sbjct: 264 NVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVM 323

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M+          +PNV  YG+L+DG C+   +D   +L  +M ++G   N +      
Sbjct: 324 DKMIQRG------CQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIM 377

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C++  +  A+++L++M+Q G  P    Y+ +++G+C  GK+  A  L + M R+G  
Sbjct: 378 HVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCR 437

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV   S LI+  CK   ++ A  + R  I  G           +  P+    +I I  L
Sbjct: 438 PDVACLSTLIDALCKAAAIDSAQELLRMSI--GM----------DCAPDVVAYSILIHAL 485

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK   + E       +  + C   V  +NS++ G CK      A  LF+++    ++ DV
Sbjct: 486 CKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDV 545

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V Y+I+IH+  K+  +     +L  M+E  C  DV T++ L+
Sbjct: 546 VTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALI 587



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 174/377 (46%), Gaps = 62/377 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFG---------------------------- 54
           + VT+++LI GF   G I  A +L  +M   G                            
Sbjct: 160 DTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHF 219

Query: 55  ------CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLI 107
                 C P+  T +T+I GL ++  ++  ++L +EMV NG       + PNVF Y +++
Sbjct: 220 REMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNG-------FAPNVFSYNTVL 272

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLN 159
            G CK   V+    L  +M  +G   + +        LCK  ++ EA R+++ M+QRG  
Sbjct: 273 HGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ 332

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + TY  L++G+C VG ++ A+ L   M  +G+ P+  +Y+ +++ +C+  ++E A  V
Sbjct: 333 PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQV 392

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
            + MI  G              P+    +  I G CK G + E  +L   +    C   V
Sbjct: 393 LQMMIQTGCP------------PDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDV 440

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
              ++LI   CK    + A EL       +   DVVAY+ILIHAL K  ++ +    L  
Sbjct: 441 ACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDV 500

Query: 340 MEENGCALDVDTFNTLM 356
           M +N C  DV T+N+++
Sbjct: 501 MVKNRCYPDVVTYNSVV 517



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 185/398 (46%), Gaps = 61/398 (15%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N VT++SL+ G C  G + +A+ L+++M   GC PN+ T +T+I G  + G ++    L 
Sbjct: 982  NVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLL 1041

Query: 83   QEMVNG---------------------MGDFGGI--------YKPNVFCYGSLIDGLCKD 113
            +EMV+G                       D  G+        Y PN+F Y SL+D  CK 
Sbjct: 1042 EEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKK 1101

Query: 114  RLVDQTKDLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
              V++   L   M  KG     ++ NT+   LCK TK+ E   LLE M+     P I T+
Sbjct: 1102 DEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTF 1161

Query: 166  TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM-- 223
              +++  C   +V++A  LF+ +   G  P++ +Y+ L++G CK+   ++A  + REM  
Sbjct: 1162 NTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTR 1221

Query: 224  -------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
                         +++G           K+F +M    + P+  T +I I  LCK   + 
Sbjct: 1222 KQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMD 1281

Query: 262  EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
            E   +   +  +  +     + +LI G CK G  + A E+   L  K    DVV ++I I
Sbjct: 1282 EANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFI 1341

Query: 322  HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              L K G++++   LL +M   G   D  T+NTL+  F
Sbjct: 1342 DWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGF 1379



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 176/367 (47%), Gaps = 37/367 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++ ++I G C    + +A +++ KM   GC+PNV T  TL+ G  R G+++  + 
Sbjct: 297 PPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAV- 355

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
              E+V  M + G  Y+PN   Y +++   C+   +++   +   M   G     IN +T
Sbjct: 356 ---ELVRKMTERG--YRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYST 410

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           ++   CK  KL EA+ LLE M++RG  P +   + L++  C    ++ A  L        
Sbjct: 411 IISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMD 470

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMN--------------VSREMILNGFKK-------- 230
             PDV +YS+LI+  CK   + EA +              V+   +++G  K        
Sbjct: 471 CAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAF 530

Query: 231 -IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            +F+ M+   V+P+  T +I I   CK+ ++    ++   ++ + C   V  +++LI G 
Sbjct: 531 LLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGL 590

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G  + A ++F ++       ++V YN LI  L K  ++++   +L  M +  C  D 
Sbjct: 591 CKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDS 650

Query: 350 DTFNTLM 356
            T+  L+
Sbjct: 651 ITYTCLI 657



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 141/298 (47%), Gaps = 37/298 (12%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            VTFN++I   C    +  A +L   +   GC PN+ T ++L+ GL ++   +    L +E
Sbjct: 1159 VTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLRE 1218

Query: 85   MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            M    G       P++  Y ++IDGLCK + VD+   LF++M   G+  + +        
Sbjct: 1219 MTRKQG-----CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISS 1273

Query: 137  LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            LCK   + EAN +LELM++ G +P   TY  L++G+C  G ++ A+ +   +  KG  PD
Sbjct: 1274 LCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPD 1333

Query: 197  VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            V ++S+ I+   K   + +A  +   M+  G             VP+T T N  + G C 
Sbjct: 1334 VVTFSIFIDWLSKRGRLRQAGELLETMLRAGL------------VPDTVTYNTLLKGFCD 1381

Query: 257  NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
                 + ++LF  +    CE     + +L+              L +K S K+L+A+V
Sbjct: 1382 ASLTEDAVDLFEVMRQCGCEPDNATYTTLV------------GHLVDKKSYKDLLAEV 1427



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 170/368 (46%), Gaps = 44/368 (11%)

Query: 14   FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
             + + Y P N  T+NSL+  FC +  +  A QL+  M   GC PNV + +T+I GL +  
Sbjct: 1079 MVEKGYVP-NLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKAT 1137

Query: 74   NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
             ++  + L ++M++          P++  + ++ID +CK   VD   +LF  +++ G   
Sbjct: 1138 KVHEGVLLLEQMLSNN------CVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTP 1191

Query: 134  NTL--------LCKKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            N +        LCK  +  +A  LL E+  ++G +P I TY  +++G C   +V+ A  L
Sbjct: 1192 NLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKL 1251

Query: 185  FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--------------K 230
            F  M   G  PD  +YS++I+  CK   ++EA NV   M+ NGF               K
Sbjct: 1252 FLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCK 1311

Query: 231  IFNEMKLCNVV---------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
              N  K   ++         P+  T +IFID L K G + +  EL  T+  +        
Sbjct: 1312 TGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVT 1371

Query: 282  FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
            +N+L++G C   + E A +LF  +       D   Y  L+  L     + K++Y  L  E
Sbjct: 1372 YNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHL-----VDKKSYKDLLAE 1426

Query: 342  ENGCALDV 349
             +   +D 
Sbjct: 1427 VSKSMVDT 1434



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 129/277 (46%), Gaps = 23/277 (8%)

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK--TKLVEAN 147
           G +GG    +   Y +LI G  +   +    +LF EM  KG+ A+  + K     L +A 
Sbjct: 155 GQWGG----DTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAG 210

Query: 148 RLLELM-----MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           +  + +     M +   P   TY  ++NG     +++ AI L + M   GF P+VFSY+ 
Sbjct: 211 QCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNT 270

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           +++G+CK   VE A+ +  +M+  G              P+  +    I+GLCK   V E
Sbjct: 271 VLHGFCKANRVENALWLLEQMVTRGCP------------PDVVSYTTVINGLCKLDQVDE 318

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
              +   +    C+  V  + +L+ G C+ G  + A EL  K++ +    + + YN ++H
Sbjct: 319 ACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMH 378

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              +   +++ + +L  M + GC  D   ++T++  F
Sbjct: 379 VFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGF 415



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 99/201 (49%), Gaps = 11/201 (5%)

Query: 159  NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            +P +FT+T L++G C  G +  A  L   M R G   +V  ++V+I G C    ++ A+ 
Sbjct: 874  SPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALE 933

Query: 219  VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
            + +EM  +G           +  P+ FT +  +D L K+G V +   L   +    C   
Sbjct: 934  LFKEMEESG-----------SCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPN 982

Query: 279  VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
            V  ++SL+ G CK G  + A+ L  +++      ++V YN +I    K G+I +  +LL 
Sbjct: 983  VVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLE 1042

Query: 339  SMEENGCALDVDTFNTLMISF 359
             M + GC  +V T+  L+ +F
Sbjct: 1043 EMVDGGCQPNVVTYTVLLDAF 1063



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 118/275 (42%), Gaps = 21/275 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           Y+  +FC   L++ L K     Q  DLF    +     +T+          +  K++ A 
Sbjct: 122 YQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAY 181

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            L + M ++GL      +  +L G C  G+ + A+  F  M+ K   PD  +Y+ +ING 
Sbjct: 182 ELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGL 240

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
            K+  +++A+ +  EM+ NGF             P  F+ N  + G CK   V   + L 
Sbjct: 241 SKSDRLDDAIRLLEEMVDNGF------------APNVFSYNTVLHGFCKANRVENALWLL 288

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +    C   V  + ++I G CK    + A  + +K+  +    +V+ Y  L+    + 
Sbjct: 289 EQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 348

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           G +     L+  M E G   +  T+N +M  F ++
Sbjct: 349 GDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRR 383



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 117/267 (43%), Gaps = 40/267 (14%)

Query: 98   PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRG 157
            PN+F +  LI GLC+   +    +L  EM   G+  N +L                    
Sbjct: 875  PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVIL-------------------- 914

Query: 158  LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF-MPDVFSYSVLINGYCKNFNVEEA 216
                   +  ++ G C   K++ A+ LF  M   G   PDVF+YS +++   K+  V++A
Sbjct: 915  -------HNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDA 967

Query: 217  MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
              +  +M+  G          C+  P   T +  + GLCK G + E   L   +  S C 
Sbjct: 968  CRLVEDMVSKG----------CS--PNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCS 1015

Query: 277  LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
              +  +N++I G CK G  + A  L  ++       +VV Y +L+ A  K G+ +    L
Sbjct: 1016 PNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGL 1075

Query: 337  LLSMEENGCALDVDTFNTLMISFLQKE 363
            +  M E G   ++ T+N+L+  F +K+
Sbjct: 1076 VEVMVEKGYVPNLFTYNSLLDMFCKKD 1102


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 188/391 (48%), Gaps = 39/391 (9%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMAT-FGCRPNVTTCD 63
           +G + A      R  +P   V FN+LI GF   G + DA  ++  M T +G  P+V T +
Sbjct: 329 IGRVDAAKDLFYRIPKP-TSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 387

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           +LI G  + G + L L++ ++M N         KPNV+ Y  L+DG CK   +D+  +L 
Sbjct: 388 SLIYGYWKKGLVGLALEVLRDMRNKGC------KPNVYSYTILVDGFCKLGKIDEAYNLL 441

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EM   G+  NT+         CK+ ++ EA  +   M ++G  P ++T+  L++G C V
Sbjct: 442 NEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEV 501

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-------- 227
            ++  A+ L   M  +G + +  +Y+ LIN + +   ++EA  +  EM+  G        
Sbjct: 502 DEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITY 561

Query: 228 ---------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                           + +F +M    +VP + +CNI I+GLC++G V E +E    + +
Sbjct: 562 NSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVL 621

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 +  FNSLI G C+ G  E    +F KL  + +  D V YN L+  L K G +  
Sbjct: 622 RGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYD 681

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              LL    E+G   +  T++ L+ S + +E
Sbjct: 682 ACLLLDEGIEDGFVPNDRTWSILLQSLVPQE 712



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 171/339 (50%), Gaps = 23/339 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI        + +A QL+++M   GC P+  T + +I GL +   +N   K  
Sbjct: 245 NSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAK-- 302

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTLL---C 138
             MVN M   G  + P+   YG L++GLCK   VD  KDLF  + K   +  NTL+    
Sbjct: 303 --MVNRMLIRG--FTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFV 358

Query: 139 KKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
              +L +A  +L +++   G+ P + TY  L+ GY   G V +A+ +   M  KG  P+V
Sbjct: 359 THGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNV 418

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           +SY++L++G+CK   ++EA N+  EM  +G K            P T   N  I   CK 
Sbjct: 419 YSYTILVDGFCKLGKIDEAYNLLNEMSADGLK------------PNTVGFNCLISAFCKE 466

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             + E +E+F  +    C+  V  FNSLI G C+    + A  L   +  + +VA+ V Y
Sbjct: 467 HRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTY 526

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N LI+A  + G+IK+   L+  M   G  LD  T+N+L+
Sbjct: 527 NTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLI 565



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 154/321 (47%), Gaps = 26/321 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  ++  L+ GFC  G I +A  L+ +M+  G +PN    + LI+   +   +   +++ 
Sbjct: 417 NVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIF 476

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM           KP+V+ + SLI GLC+   +     L  +M  +G+ ANT+      
Sbjct: 477 REMPRKGC------KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 530

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               ++ ++ EA +L+  M+ +G      TY  L+ G C  G+V+ A +LF+ M R G +
Sbjct: 531 NAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLV 590

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P   S ++LING C++  VEEA+   +EM+L G              P+  T N  I+GL
Sbjct: 591 PSSISCNILINGLCRSGMVEEAVEFQKEMVLRG------------STPDIVTFNSLINGL 638

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + + + +F  L+          +N+L+   CK G    A  L ++      V + 
Sbjct: 639 CRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPND 698

Query: 315 VAYNILIHALGKEGQIKKENY 335
             ++IL+ +L  +  + +  +
Sbjct: 699 RTWSILLQSLVPQETLDRRTF 719



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 124/304 (40%), Gaps = 44/304 (14%)

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           + L +    E+ +  G   G Y+ +   Y  LI  L  +        L M+MKD+GI   
Sbjct: 81  LPLDVSTSMELFSWTGSQKG-YRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGI--- 136

Query: 135 TLLCKKTKLVEANR--------------LLELMMQRGLNPVIFTYTPLL----NGYCLVG 176
             + K++  +   R              +LE+       P   +Y  +L    +G C   
Sbjct: 137 --VFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKV 194

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
             NV    +D ++RK   P +F++ V++   C    V+ A++V R+M  +G         
Sbjct: 195 AANV---FYDMLSRK-IPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHG--------- 241

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
               VP +      I  L K   V E ++L   + +  C    E FN +I G CKF    
Sbjct: 242 ---CVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRIN 298

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A+++ N++  +    D + Y  L++ L K G++     L   + +    +    FNTL+
Sbjct: 299 EAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVI----FNTLI 354

Query: 357 ISFL 360
             F+
Sbjct: 355 HGFV 358


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 178/349 (51%), Gaps = 26/349 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ND T N LI   C   +I  A  ++ KM   G +P+  T  TLI GL   G +   ++L 
Sbjct: 120 NDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELF 179

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM       G    PN   +  L+D LCK  +V + + +F  M +KG+  N        
Sbjct: 180 NEMA------GRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALM 233

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C + ++ +A+++ E+M+ +G  P + +Y+ L+NGYC   +++ A AL   M+ K  +
Sbjct: 234 NGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELI 293

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+ L+ G C   ++ EA            +++F +M    ++P   T +I +DGL
Sbjct: 294 PNTVTYNTLMQGLCHASSLLEA------------QELFKKMCSSGMLPNLRTYSILLDGL 341

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK+GH+ E ++L  +++    E  + ++N LI+G    G  E+A ELF+KL    +   V
Sbjct: 342 CKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSV 401

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             YNI+I  L KEG   +   L   ME++G   D  ++N ++  FLQ +
Sbjct: 402 RTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQ 450



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 59/254 (23%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-----L 77
           N  T+N+L+ G+C+   + DAS++ + M   GC P+V +   LI G  ++  ++     L
Sbjct: 225 NIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALL 284

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
           T    +E++           PN   Y +L+ GLC    + + ++LF +M   G+  N   
Sbjct: 285 TQMSEKELI-----------PNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRT 333

Query: 137 -------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA-------- 181
                  LCK   L EA +LL  M +R L P I  Y  L+ G  + GK+ VA        
Sbjct: 334 YSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLF 393

Query: 182 ---------------------------IALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
                                        LF  M   GF+PD  SY+V+I G+ +N +  
Sbjct: 394 ANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPS 453

Query: 215 EAMNVSREMILNGF 228
            A+ +  EM+   F
Sbjct: 454 TAIQLIDEMVGRRF 467


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 169/346 (48%), Gaps = 29/346 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N+LI G C + N+  A  LV +  + G  P+V T   L  GL + G ++   +L +EM
Sbjct: 333 TYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEM 392

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            +G G       PN+  Y +LIDGLCK    ++  +L   +   G   + +        L
Sbjct: 393 -SGKG-----CTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGL 446

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ +L +A +++E M++RG  P + TYT L+ G C  G+V+ A  +F  M  K    D 
Sbjct: 447 CKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADA 506

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y  L+NGYCK+   +EA  V     ++G +            P     N  +DG CK 
Sbjct: 507 LAYVSLVNGYCKSSRTKEAQKV-----VDGIRG----------TPYIDVYNALMDGYCKE 551

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + E+  +F  +    C   ++ +N ++ G CK G  + A      +     V DVV+Y
Sbjct: 552 GRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSY 611

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           NI+I  L K  + K+   +L  M + G   D  T+NTLM  F ++E
Sbjct: 612 NIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEE 657



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 157/346 (45%), Gaps = 31/346 (8%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P +  T++ +IK  C    I  A  ++ K    G +P V+    L     +TG +   
Sbjct: 156 YAP-DSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDA 214

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           L++          F  I  P+   Y ++I G C+    D   +   EM ++ +  +    
Sbjct: 215 LEI----------FRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTY 264

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LCK +K  +A+ +L  M+ RG+ P   T+  +++G C  GK   A +L   MA 
Sbjct: 265 NILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAE 324

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           +   P   +Y+ LI+G CK  NV+ A ++  E + +GF            VP+  T +I 
Sbjct: 325 RNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGF------------VPDVVTYSIL 372

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
            DGLCK G + E  EL   +    C   +  +N+LI G CK    E A EL   L     
Sbjct: 373 ADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGF 432

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V DVV Y I++  L KEG++ K   ++  M + GC   V T+  LM
Sbjct: 433 VPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALM 478



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 174/397 (43%), Gaps = 49/397 (12%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            SK   A     S +   + P + VT+  ++ G C EG +  A ++V+ M   GC P+V 
Sbjct: 414 ASKTEKAYELLESLVSSGFVP-DVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVI 472

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   L+ GL RTG ++    + +EMV+           +   Y SL++G CK     + +
Sbjct: 473 TYTALMEGLCRTGRVDEAHHIFKEMVS------KDCTADALAYVSLVNGYCKSSRTKEAQ 526

Query: 121 DLFMEMKDKGINA-------NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
            +       GI         N L+   CK+ +L E   + E M  RG  P I TY  +++
Sbjct: 527 KVV-----DGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMD 581

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
           G C  GKV+ A    +SM   G +PDV SY+++I+G  K    +EA  V  +MI  G   
Sbjct: 582 GLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPP 641

Query: 231 -----------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
                                  I   M    V P+  T N  I GL +   + +  EL 
Sbjct: 642 DAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELM 701

Query: 268 PTLEISNCELFV-EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
             +  + C +     +N++I   CK G  + A  L + ++   + A+ V YNI I  L K
Sbjct: 702 HEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCK 761

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           EG++ + + LL  M+      D  ++ T++I   + E
Sbjct: 762 EGRLDEASSLLSEMDT---LRDEVSYTTVIIGLCKAE 795



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 145/328 (44%), Gaps = 46/328 (14%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+N+L+  FC E    DA  ++K M   G  P+  T +TLI+GL +T  +    +
Sbjct: 640 PPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYE 699

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           L  EM+       G        Y ++ID LCK+  + Q   L   M   G+ ANT+    
Sbjct: 700 LMHEMLRN-----GCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTV---- 750

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                                  TY   ++  C  G+++ A +L   M     + D  SY
Sbjct: 751 -----------------------TYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSY 784

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + +I G CK   ++ A  ++REM+          +K   +   TF  N+ ID   K   +
Sbjct: 785 TTVIIGLCKAEQLDRASKLAREMV---------AVKGLCITSHTF--NLLIDAFTKTKRL 833

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            E + L   +    C   V  +N +I   CK    + A ELF++++ + +VA  V+Y +L
Sbjct: 834 DEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVL 893

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALD 348
           I+ L  +G+ K+   +L  M  + C +D
Sbjct: 894 IYGLCGQGRGKEALQVLEEMASSDCEID 921



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 166/346 (47%), Gaps = 32/346 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P  DV +N+L+ G+C EG + +   + + MA  GC PN+ T + ++ GL + G ++    
Sbjct: 536 PYIDV-YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 594

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NT 135
             + M +     G +  P+V  Y  +IDGL K     + + +  +M   GI       NT
Sbjct: 595 FLESMHSA----GCV--PDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNT 648

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+   CK+ +  +A  +L+ M++ G++P   TY  L++G     ++  A  L   M R G
Sbjct: 649 LMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG 708

Query: 193 -FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
             +    +Y+ +I+  CK   +++A+ +   M  +G            V   T T NIFI
Sbjct: 709 CVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHG------------VEANTVTYNIFI 756

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL-SCKNL 310
           D LCK G + E   L   ++    E+    + ++I G CK    + AS+L  ++ + K L
Sbjct: 757 DRLCKEGRLDEASSLLSEMDTLRDEVS---YTTVIIGLCKAEQLDRASKLAREMVAVKGL 813

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                 +N+LI A  K  ++ +   LL  M + GC+  V T+N ++
Sbjct: 814 CITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVI 859



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 16/215 (7%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           + E M+  G  P  +TY  ++   C + +++ A  + D    +GF P+V  Y++L   +C
Sbjct: 147 MFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFC 206

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K   +++A+ + R +                  P+    N  I G C+       +E   
Sbjct: 207 KTGRLKDALEIFRNI----------------PSPDAIAYNAIIHGHCRKNDCDGALEFLK 250

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +        V  +N LI G CK    + ASE+ +++  + +  D V +N ++  L K G
Sbjct: 251 EMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAG 310

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + ++ + LL  M E  C     T+NTL+    +++
Sbjct: 311 KFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQ 345



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 16/201 (7%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           RG     FT    L      G  +   A+F+ M   G+ PD ++Y ++I   C+   +++
Sbjct: 119 RGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDK 178

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A  +  +  + GFK            PE     I     CK G + + +E+F  +   + 
Sbjct: 179 AFTMLDKAKVRGFK------------PEVSVYTILTRAFCKTGRLKDALEIFRNIPSPD- 225

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
                 +N++I G C+    + A E   +++ + +  DV  YNILI  L K  +  K + 
Sbjct: 226 ---AIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASE 282

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           +L  M + G   D  TFN++M
Sbjct: 283 MLHEMVDRGVTPDTVTFNSIM 303


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 179/366 (48%), Gaps = 32/366 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+NSLI G C       A +L + M +  C P++ T +TL+ GL RTG +   + L 
Sbjct: 113 NVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALF 172

Query: 83  QEMVNGMG-DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           QEM++    D      PNV  Y  LIDGLCK   V Q  +L   MK +G + + +     
Sbjct: 173 QEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTIL 232

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK++K+  A  +L  M+  G  P + TY  LL+G C   +V+ A+AL   M  +G 
Sbjct: 233 VDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGC 292

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM--KLCN--------- 239
            P+V +Y  LI+G CK   V++A  +  +MI  G      I+N +   LC          
Sbjct: 293 TPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIA 352

Query: 240 ---------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
                    + P+  T +  I GLC++  + E   L   ++   C   V ++++LI G C
Sbjct: 353 LLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLC 412

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A +L+  ++     ADVV Y+ LI  L K G++ + + LL  M   G      
Sbjct: 413 KAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTM 472

Query: 351 TFNTLM 356
           T+N+L+
Sbjct: 473 TYNSLI 478



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 166/347 (47%), Gaps = 31/347 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+NSL+ G C    + DA  L++ M   GC PNV T  TLI GL + G +     + 
Sbjct: 260 NLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAML 319

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M+    D GG   P++  Y  LI+GLCK   VD++  L       GI  + +      
Sbjct: 320 ADMI----DKGG--TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVI 373

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +L EA RLL  +  RG  P +  Y+ L++G C  GKV+ A  L++ MA  G  
Sbjct: 374 YGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCD 433

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            DV +YS LI+G CK   V+EA  +   M+  G              P T T N  I GL
Sbjct: 434 ADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTP------------PSTMTYNSLIKGL 481

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA-- 312
           C   H+ E +EL   +E SNC      +N LI G C+    + A  L  +   + + A  
Sbjct: 482 CDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGG 541

Query: 313 ---DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              D +AY+ LI  L K G++ +       M +NG   D  T++ L+
Sbjct: 542 TALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILL 588



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 167/376 (44%), Gaps = 58/376 (15%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ +L++GFC  G I  A +   +M +    PNV  C  LI GL +       L+  + M
Sbjct: 11  TYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAM 70

Query: 86  VNGMGD----------FGGIYK--------------------PNVFCYGSLIDGLCKDRL 115
             G G             G++K                    PNV  Y SLIDGLCK+  
Sbjct: 71  -QGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNE 129

Query: 116 VDQTKDLFMEMKD-----KGINANTLLC---KKTKLVEANRLLELMMQR-------GLNP 160
            D+ ++LF  MK        +  NTLL    +  KL  A  L + M+ R         +P
Sbjct: 130 PDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSP 189

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            + TY+ L++G C   +V+ A+ L +SM  +G  PDV +Y++L++G CK   V  A  V 
Sbjct: 190 NVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVL 249

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
           REM+  G             VP   T N  + GLC+   V + + L   +    C   V 
Sbjct: 250 REMLDAG------------CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVV 297

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            + +LI G CK G  + A  +   +  K    D++ YN+LI+ L K  Q+ +   LL   
Sbjct: 298 TYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRA 357

Query: 341 EENGCALDVDTFNTLM 356
              G   DV T+++++
Sbjct: 358 VSGGIKPDVVTYSSVI 373



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 125/277 (45%), Gaps = 27/277 (9%)

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--------KKTKLVEA 146
           I +P+V+ Y +L+ G C+   +DQ +  F EM+ K +  N  LC        K  + ++A
Sbjct: 4   ICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDA 63

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
            R    M   G+      YT LL+G     +++ A+A+   M   G  P+V +Y+ LI+G
Sbjct: 64  LRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDG 123

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            CKN   + A            +++F  MK     P   T N  +DGL + G +   M L
Sbjct: 124 LCKNNEPDRA------------QELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 171

Query: 267 FPTL-------EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           F  +           C   V  ++ LI G CK      A EL   +  +    DV+ Y I
Sbjct: 172 FQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTI 231

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L+  L KE ++     +L  M + GC  ++ T+N+L+
Sbjct: 232 LVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLL 268



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 111/235 (47%), Gaps = 31/235 (13%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P ++TY  LL G+C  G+++ A   FD M  K  +P+VF  S+LI+G CK     +A+ 
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 219 VSREM--------------ILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLC 255
             R M              +L+G  K         I +EM+     P   T N  IDGLC
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLC 125

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK------- 308
           KN       ELF  ++   C   +  +N+L+ G  + G  E A  LF ++  +       
Sbjct: 126 KNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDD 185

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               +V+ Y++LI  L K  ++ +   LL SM+  GC+ DV T+ T+++  L KE
Sbjct: 186 RCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITY-TILVDGLCKE 239



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 113/251 (45%), Gaps = 50/251 (19%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + + +++LI G C  G + +A  L + MA  GC  +V T  TLI GL + G ++    
Sbjct: 398 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHL 457

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           L   MV  MG       P+   Y SLI GLC         DL                  
Sbjct: 458 LLARMVR-MG-----TPPSTMTYNSLIKGLC---------DL------------------ 484

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS-----MARKGFMP 195
             L EA  L+E M +    P   TY  L++G C + +V+ A+ L +      +A  G   
Sbjct: 485 NHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTAL 544

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D  +YS LI+G CK   V EA++  +EMI NG            V+P+  T +I ++GL 
Sbjct: 545 DTIAYSSLIDGLCKAGRVAEALDYFQEMIDNG------------VIPDHITYSILLEGLK 592

Query: 256 KNGHVLEVMEL 266
           K+  + E+  L
Sbjct: 593 KSKDLHELRHL 603


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 180/384 (46%), Gaps = 51/384 (13%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C  P+N +T+N LI G C  G +  A++++K M T GC+PN  T   LI G  R  NM  
Sbjct: 74  CGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGR 133

Query: 78  TLKLHQEM---------------VNGMGD---------------FGGIYKPNVFCYGSLI 107
            L+L  EM               +NG+                 F G+ KPNV  Y +LI
Sbjct: 134 ALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGL-KPNVVVYSTLI 192

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLN 159
            G   +  +++ + L   M   G+  +        + L K  K+ EA+  L  +  RGL 
Sbjct: 193 MGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK 252

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P   T+   + GY   GK+  A   FD M   G MP+   Y+VLING+ K  N+ EA++ 
Sbjct: 253 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS- 311

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                      IF  +    V+P+  TC+ FI GL KNG V E +++F  L+       V
Sbjct: 312 -----------IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 360

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             ++SLI G CK G  E A EL +++  K +  ++  YN L+  L K G I++   L   
Sbjct: 361 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 420

Query: 340 MEENGCALDVDTFNTLMISFLQKE 363
           M E G   D  T++T++  + + E
Sbjct: 421 MPEKGLEPDSVTYSTMIDGYCKSE 444



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 152/323 (47%), Gaps = 28/323 (8%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T K+  A   F   +     P N+  +  LI G    GN+ +A  + + +   G  P+V 
Sbjct: 268 TGKMTEAAKYFDEMLDHGLMP-NNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQ 326

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           TC   I GL + G +   LK+  E+        G+  P+VF Y SLI G CK   V++  
Sbjct: 327 TCSAFIHGLLKNGRVQEALKVFSELKEK-----GLV-PDVFTYSSLISGFCKQGEVEKAF 380

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L  EM  KGI  N          LCK   +  A +L + M ++GL P   TY+ +++GY
Sbjct: 381 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 440

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C    V  A +LF  M  KG  P  F Y+ L++G CK  ++E+AMN+ REM+  GF    
Sbjct: 441 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-- 498

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                      T + N  IDG CK+  + E  +LF  +           + ++I   CK 
Sbjct: 499 -----------TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKA 547

Query: 293 GIFEIASELFNKLSCKNLVADVV 315
           G  E A+ LF ++  +NL+ D V
Sbjct: 548 GKMEEANLLFKEMQERNLIVDTV 570



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 165/341 (48%), Gaps = 28/341 (8%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R  +P + VTF + I G+   G + +A++   +M   G  PN      LI G  + GN+ 
Sbjct: 249 RGLKP-DAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLM 307

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
             L + + + + +G       P+V    + I GL K+  V +   +F E+K+KG+  +  
Sbjct: 308 EALSIFRHL-HALGVL-----PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVF 361

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                    CK+ ++ +A  L + M  +G+ P IF Y  L++G C  G +  A  LFD M
Sbjct: 362 TYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM 421

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             KG  PD  +YS +I+GYCK+ NV EA +            +F+EM    V P +F  N
Sbjct: 422 PEKGLEPDSVTYSTMIDGYCKSENVAEAFS------------LFHEMPSKGVQPHSFVYN 469

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             + G CK G + + M LF  +        +  FN+LI G CK    + AS+LF ++  K
Sbjct: 470 ALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAK 528

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
            ++ D V Y  +I    K G++++ N L   M+E    +D 
Sbjct: 529 QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDT 569



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 162/345 (46%), Gaps = 27/345 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +++LI G+  EG I +A +L+  M+  G  P++   + +I+ L + G M       
Sbjct: 184 NVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYL 243

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC---- 138
            E + G G      KP+   +G+ I G  K   + +    F EM D G+  N  L     
Sbjct: 244 LE-IQGRG-----LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLI 297

Query: 139 ----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K   L+EA  +   +   G+ P + T +  ++G    G+V  A+ +F  +  KG +
Sbjct: 298 NGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLV 357

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDVF+YS LI+G+CK   VE+A  +  EM L G            + P  F  N  +DGL
Sbjct: 358 PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKG------------IAPNIFIYNALVDGL 405

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK+G +    +LF  +     E     ++++I G CK      A  LF+++  K +    
Sbjct: 406 CKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHS 465

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             YN L+H   KEG ++K   L   M + G A  + +FNTL+  +
Sbjct: 466 FVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGY 509



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 146/313 (46%), Gaps = 42/313 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+L+ G C  G+I+ A +L   M   G  P+  T  T+I G  ++ N+     L  EM 
Sbjct: 398 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 457

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----INANTLL---CK 139
           +      G+ +P+ F Y +L+ G CK+  +++  +LF EM  KG    ++ NTL+   CK
Sbjct: 458 SK-----GV-QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCK 511

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK-----------------VNVAI 182
             K+ EA++L + M+ + + P   TYT +++ +C  GK                 V+   
Sbjct: 512 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVF 571

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
           ALF+ M  KG  PD  +Y ++I  +CK  N+ EA  +  E++  G            ++ 
Sbjct: 572 ALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKG------------MLT 619

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +    ++ I  LCK   + E  +L   +     +  +   ++L+R   + G  + A+ +F
Sbjct: 620 KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVF 679

Query: 303 NKLSCKNLVADVV 315
             +    LV D  
Sbjct: 680 EGVKSLGLVPDTT 692



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 133/279 (47%), Gaps = 22/279 (7%)

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--------KK 140
           MG+ G +  PN + Y  +  GLC+ + +++ K  F EM+  G+  +   C        ++
Sbjct: 1   MGEKGLV--PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMRE 58

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
             + E  R+ ++M+  G+   + TY  L++G C  GK+  A  +   M   G  P+  ++
Sbjct: 59  GDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF 118

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
            +LI GYC+  N+  A+            ++ +EM+  N+VP   +    I+GLC    +
Sbjct: 119 CLLIEGYCREHNMGRAL------------ELLDEMEKRNLVPSAVSYGAMINGLCHCKDL 166

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
               +L   +  S  +  V ++++LI G    G  E A  L + +SC  +  D+  YN +
Sbjct: 167 SLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAI 226

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           I  L K G++++ +  LL ++  G   D  TF   ++ +
Sbjct: 227 ISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGY 265



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 25/222 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM---NLTLKL 81
           ++FN+LI G+C    I++ASQL ++M      P+  T  T+I    + G M   NL  K 
Sbjct: 500 LSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKE 559

Query: 82  HQE----------MVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKG 130
            QE          +   M   G   KP+   YG +I   CK D LV+  K L  E+  KG
Sbjct: 560 MQERNLIVDTVFALFEKMVAKG--VKPDEVTYGLVIYAHCKEDNLVEAFK-LRDEVVGKG 616

Query: 131 INAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           +           T LCK+  L EA++LL+ M + GL P +   + L+  +   GK++ A 
Sbjct: 617 MLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEAT 676

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
            +F+ +   G +PD  +   L+NG   + + E+A N+ ++++
Sbjct: 677 RVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 718


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 191/402 (47%), Gaps = 61/402 (15%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++L A        +R  +P + VT+N+L++G+C   N+ +A +L  +M   G  P+V   
Sbjct: 280 RILEAQGVLAMMSKRGEKP-DIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNY 338

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + LI G  +T  ++  + L +E+ N          P +  Y SLIDGLC    +   K L
Sbjct: 339 NVLIDGYCKTKMVDEAMVLFKELCNKN------LVPTIASYNSLIDGLCNSGRISHVKKL 392

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM       + +        LCK+ +++EA  +L +MM++G+ P I TY  +++GYCL
Sbjct: 393 LDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCL 452

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
              VNVA  +F+ M + G  PD+ +Y+VLINGYCK   V+EA+             +F E
Sbjct: 453 RNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAI------------VLFKE 500

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+  N++P+  + N  IDGLC  G +  V EL   +  S     V  +N L+   CK   
Sbjct: 501 MRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQP 560

Query: 295 FEIASELFNKL-----------------------------SCKNLV-----ADVVAYNIL 320
           F+ A  LF ++                             + K+L+      +V  Y IL
Sbjct: 561 FDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTIL 620

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           I+AL K+G   +   LL  ME+N    D  TF  ++   LQ+
Sbjct: 621 INALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQR 662



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 202/458 (44%), Gaps = 108/458 (23%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A     + ++  Y+P N VTFN++I GFC+ G I  A    + +   G   +  T  TLI
Sbjct: 109 AFSLLATILKSGYQP-NLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLI 167

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G +   L L QEM           +PN+  Y +LIDGLCKD  V     L  ++
Sbjct: 168 NGLSKNGQIKAALHLLQEMEKSS------VQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 127 KDKGI-----NANTL--------------------------------------LCKKTKL 143
            ++GI       N+L                                      LCK+ ++
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRI 281

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           +EA  +L +M +RG  P I TY  L+ GYC    V+ A  LF+ M ++G  PDV +Y+VL
Sbjct: 282 LEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVL 341

Query: 204 INGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMKLCNV 240
           I+GYCK   V+EAM + +E+              +++G          KK+ +EM     
Sbjct: 342 IDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ 401

Query: 241 VPETFTCNIFIDGLCKNGHVLEVM-----------------------------------E 265
            P+  T NI ID LCK G +LE +                                   +
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKD 461

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +F  +  S  E  +  +N LI G CK  + + A  LF ++  KNL+ D+ +YN LI  L 
Sbjct: 462 IFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLC 521

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             G+I     LL  M ++G + DV T+N L+ +F + +
Sbjct: 522 NLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQ 559



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 128/250 (51%), Gaps = 20/250 (8%)

Query: 122 LFMEMKDKGINAN----TLLC----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF +++ KGI+ +    T+L      ++    A  LL  +++ G  P + T+  ++NG+C
Sbjct: 77  LFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFC 136

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
           + G +  A+    ++  +G++ D F+Y  LING  KN  ++ A++            +  
Sbjct: 137 INGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALH------------LLQ 184

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM+  +V P     +  IDGLCK+G V + + L   +      L    +NSLI GCC  G
Sbjct: 185 EMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVG 244

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
            ++  ++L  K+  +N+  D   +NILI AL KEG+I +   +L  M + G   D+ T+N
Sbjct: 245 RWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYN 304

Query: 354 TLMISFLQKE 363
            LM  +  +E
Sbjct: 305 ALMEGYCSRE 314



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 115/266 (43%), Gaps = 39/266 (14%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++L AL      +++  +P N VT+N+++ G+C+  N+  A  +  +M   G  P++   
Sbjct: 420 RILEALGVLVMMMKKGVKP-NIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNY 478

Query: 63  DTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGI------------ 95
           + LI G  +T  ++  + L +EM               ++G+ + G I            
Sbjct: 479 NVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCD 538

Query: 96  --YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVE 145
               P+V  Y  L+D  CK +  D+   LF ++ + GI  +          LCK  KL  
Sbjct: 539 SGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKM 597

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A   L+ ++  G +P + TYT L+N  C  G    A+ L   M      PD  ++ ++I 
Sbjct: 598 AEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIG 657

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKI 231
              +    ++A  +  EMI  G   I
Sbjct: 658 VLLQRNETDKAEKLREEMIARGLVNI 683


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 170/342 (49%), Gaps = 24/342 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ SLI+G C    +  A   + KM + G  P+V T   +I  L     ++   K  +E
Sbjct: 12  VTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE 71

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK----GINANTL---L 137
           M N          PNV  Y  LIDGLCK   VD+   L  +M+ K     +  N+L   L
Sbjct: 72  MANRN------LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGL 125

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  +  EA  LLE M+  G  P IFTYT L+ G+C   K + A+ +F+ +  +GF PDV
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +YS LI+G CK   ++EA+++   MI +G           + +P T T N  I G C+ 
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSG-----------SCMPNTVTYNSLISGFCRM 234

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + E M L   +  +     V  + +L+ G CK    + A +L N+++ K L  DVV +
Sbjct: 235 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTF 294

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             L+  L +E ++    ++L  M    C+  V T+NT++  +
Sbjct: 295 TSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGY 336



 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 177/378 (46%), Gaps = 64/378 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKM--------ATF--------------------- 53
           N VT+  LI G C  G + +A  L+ KM         T+                     
Sbjct: 80  NVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLE 139

Query: 54  -----GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108
                GC P++ T  TLITG  ++   +  L++ +++V         ++P+V  Y  LID
Sbjct: 140 EMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV------ARGFRPDVVTYSCLID 193

Query: 109 GLCKDRLVDQTKDLFMEMKDKG------INANTLL---CKKTKLVEANRLLELMMQRGLN 159
           GLCK+  + +  DLF  M   G      +  N+L+   C+  K+ EA  LLE M + G +
Sbjct: 194 GLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSS 253

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + TYT L+NG+C + +++ A  L + M RKG  PDV +++ L++G C+   + +A++ 
Sbjct: 254 PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH- 312

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                      I  EM+  +  P  +T N  +DG C+   + E  +    LE  +C   V
Sbjct: 313 -----------ILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNV 359

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             FN +IRG CK      A EL  +   +    DVV Y  +I  L +E ++ +   +   
Sbjct: 360 VSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRK 419

Query: 340 M-EENGCALDVDTFNTLM 356
           M EE GC  +  T++TL+
Sbjct: 420 MLEEPGCLPNSITYSTLI 437



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 174/380 (45%), Gaps = 69/380 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLI G C      +A  L+++M   GC P++ T  TLITG  ++   +  L++ ++
Sbjct: 116 VTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQ 175

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTLL- 137
           +V         ++P+V  Y  LIDGLCK+  + +  DLF  M   G      +  N+L+ 
Sbjct: 176 LV------ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 229

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             C+  K+ EA  LLE M + G +P + TYT L+NG+C + +++ A  L + M RKG  P
Sbjct: 230 GFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTP 289

Query: 196 DV-----------------------------------FSYSVLINGYCKNFNVEEAMNVS 220
           DV                                   ++Y+ +++GYC+   +EEA    
Sbjct: 290 DVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEAR--- 346

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                   K +  EM   +  P   + NI I GLCK     E MEL        C   V 
Sbjct: 347 --------KFMLEEM---DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVV 395

Query: 281 IFNSLIRGCCKFGIFEIASELFNK-LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
           ++ ++I G C+    + A  ++ K L     + + + Y+ LI  L   G + +    +  
Sbjct: 396 MYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYI-- 453

Query: 340 MEENGCALDVDTFNTLMISF 359
             E GC  ++ T+N L+ +F
Sbjct: 454 --EKGCVPNIGTYNLLIDAF 471



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 27/260 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  FG  I+      N VT+NSLI GFC  G + +A  L+++MA  G  P+V T  TL+
Sbjct: 204 AIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLM 263

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  +   ++    L  +M        G+  P+V  + SL+DGLC++  +     +  EM
Sbjct: 264 NGFCKLARLDDAYDLLNQMTR-----KGL-TPDVVTFTSLMDGLCRENRLSDAVHILGEM 317

Query: 127 KDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           + K  +      NT+L   C+  +L EA +   ++ +    P + ++  ++ G C V + 
Sbjct: 318 RRKSCSPTVYTYNTILDGYCRANQLEEARKF--MLEEMDCPPNVVSFNIMIRGLCKVNRS 375

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + A+ L +   R+   PDV  Y+ +I+G C+   V+EA  V R+M+         E   C
Sbjct: 376 SEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKML---------EEPGC 426

Query: 239 NVVPETFTCNIFIDGLCKNG 258
             +P + T +  I GLC  G
Sbjct: 427 --LPNSITYSTLITGLCNAG 444



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 79/200 (39%), Gaps = 48/200 (24%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           TYT L+ G C V ++  A+     M  KGF PDV++Y+ +I+  C    + EA       
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA------- 65

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                +K   EM   N+ P   T  + IDGL                             
Sbjct: 66  -----RKFLEEMANRNLTPNVVTYTVLIDGL----------------------------- 91

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
                 CK G  + A  L +K+  K  V   V YN LI  L K  +  +   LL  M  +
Sbjct: 92  ------CKGGRVDEAVALLSKMR-KKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYS 144

Query: 344 GCALDVDTFNTLMISFLQKE 363
           GC  D+ T+ TL+  F + +
Sbjct: 145 GCIPDIFTYTTLITGFCKSK 164



 Score = 38.1 bits (87), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 35/83 (42%)

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
           +C      + SLI+G CK    E A     K+  K    DV  Y  +IHAL  E ++ + 
Sbjct: 6   SCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 334 NYLLLSMEENGCALDVDTFNTLM 356
              L  M       +V T+  L+
Sbjct: 66  RKFLEEMANRNLTPNVVTYTVLI 88


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 188/405 (46%), Gaps = 73/405 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF +LI G C EGN+  A++    +   G + N  T   +I GL + G+ +  + L+ E
Sbjct: 142 VTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAI-LYLE 200

Query: 85  MVNGMG-DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN----------- 132
            + G   D        V  Y +++D LCKD +V +  +LF  M  KGI            
Sbjct: 201 KIKGRNCDL-----DVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIH 255

Query: 133 ----------ANTLL----------------------CKKTKLVEANRLLELMMQRGLNP 160
                     A TLL                      CK   +  A  ++  M+  G+ P
Sbjct: 256 GLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEP 315

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            + TY  +++G+CL+ ++  A+ +F+ M  KGF+P++ +YS LI+G+CK  N+ +A+ + 
Sbjct: 316 DVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLL 375

Query: 221 REMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            EM+ +G                        K++F  M   +  P   TC I +DGL K 
Sbjct: 376 GEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKC 435

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
               E + LF  +E  N EL V I+N ++ G C FG    A ELF+ L  K +  DVVAY
Sbjct: 436 QFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAY 495

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             +I  L KEG +     LL+ MEENGC  +  T+N  +   LQ+
Sbjct: 496 TTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQR 540



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 168/368 (45%), Gaps = 38/368 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           + +++++   C +G + +A  L   M + G +P++   ++LI GL   G       L   
Sbjct: 213 IAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGN 272

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M+       GI  PNV  +  L+D  CKD ++ + K +   M   G+  + +        
Sbjct: 273 MMRK-----GIM-PNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISG 326

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C  +++ +A ++ ELM+ +G  P + TY+ L++G+C    +N A+ L   M   G  PD
Sbjct: 327 HCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPD 386

Query: 197 VFSYSVLINGYCKNFNVEEAMNV--------------SREMILNGFKK---------IFN 233
           V ++S LI G+CK    E A  +              +  +IL+G  K         +F 
Sbjct: 387 VVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFR 446

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM+  N+       NI +DG+C  G + +  ELF  L     ++ V  + ++I+G CK G
Sbjct: 447 EMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEG 506

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           + + A  L  K+     + +   YN+ +  L +   I +    LL M+  G + D  T  
Sbjct: 507 LLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGLSADATT-T 565

Query: 354 TLMISFLQ 361
            L+IS+  
Sbjct: 566 ELLISYFS 573



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 145/328 (44%), Gaps = 35/328 (10%)

Query: 45  QLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK----PNV 100
            L+K + + G +P+V T   +I  L    ++N T       V G    G ++K    P V
Sbjct: 92  SLIKHIYSLGIKPDVYTLTIIINCL---CHLNHT-------VFGFSVLGVMFKIGVDPTV 141

Query: 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
             + +LI+GLC +  V +       ++D G  +N+         LCK      A   LE 
Sbjct: 142 VTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEK 201

Query: 153 MMQRGLN-PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
           +  R  +  V+  Y+ +++  C  G V  A+ LF  M  KG  PD+ +Y+ LI+G C   
Sbjct: 202 IKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFG 261

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
             +EA  +   M+  G            ++P   T N+ +D  CK+G +     +   + 
Sbjct: 262 RWKEATTLLGNMMRKG------------IMPNVQTFNVLVDNFCKDGMISRAKTIMGFMV 309

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
               E  V  +NS+I G C       A ++F  +  K  + ++V Y+ LIH   K   I 
Sbjct: 310 HVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNIN 369

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
           K  +LL  M  +G   DV T++TL+  F
Sbjct: 370 KALFLLGEMVNSGLNPDVVTWSTLIGGF 397



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 24/204 (11%)

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCK------NFNVEEAM--------NVSREMIL 225
             I+L   +   G  PDV++ +++IN  C        F+V   M         V+   ++
Sbjct: 89  TTISLIKHIYSLGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLI 148

Query: 226 NGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           NG           +  + ++       ++T    I+GLCK G     +     ++  NC+
Sbjct: 149 NGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCD 208

Query: 277 LFVEI-FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           L V I +++++   CK G+   A  LF+ ++ K +  D+VAYN LIH L   G+ K+   
Sbjct: 209 LDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATT 268

Query: 336 LLLSMEENGCALDVDTFNTLMISF 359
           LL +M   G   +V TFN L+ +F
Sbjct: 269 LLGNMMRKGIMPNVQTFNVLVDNF 292



 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 14/118 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM----NL 77
           LN V +N ++ G C  G + DA +L   + + G + +V    T+I GL + G +    NL
Sbjct: 455 LNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENL 514

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
            +K+ +   NG         PN F Y   + GL +   + ++    + MK KG++A+ 
Sbjct: 515 LMKMEE---NGC-------LPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGLSADA 562


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 191/402 (47%), Gaps = 61/402 (15%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++L A        +R  +P + VT+N+L++G+C   N+ +A +L  +M   G  P+V   
Sbjct: 280 RILEAQGVLAMMSKRGEKP-DIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNY 338

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + LI G  +T  ++  + L +E+ N          P +  Y SLIDGLC    +   K L
Sbjct: 339 NVLIDGYCKTKMVDEAMVLFKELCNKN------LVPTIASYNSLIDGLCNSGRISHVKKL 392

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM       + +        LCK+ +++EA  +L +MM++G+ P I TY  +++GYCL
Sbjct: 393 LDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCL 452

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
              VNVA  +F+ M + G  PD+ +Y+VLINGYCK   V+EA+             +F E
Sbjct: 453 RNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAI------------VLFKE 500

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+  N++P+  + N  IDGLC  G +  V EL   +  S     V  +N L+   CK   
Sbjct: 501 MRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQP 560

Query: 295 FEIASELFNKL-----------------------------SCKNLV-----ADVVAYNIL 320
           F+ A  LF ++                             + K+L+      +V  Y IL
Sbjct: 561 FDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTIL 620

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           I+AL K+G   +   LL  ME+N    D  TF  ++   LQ+
Sbjct: 621 INALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQR 662



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 202/458 (44%), Gaps = 108/458 (23%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A     + ++  Y+P N VTFN++I GFC+ G I  A    + +   G   +  T  TLI
Sbjct: 109 AFSLLATILKSGYQP-NLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLI 167

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G +   L L QEM           +PN+  Y +LIDGLCKD  V     L  ++
Sbjct: 168 NGLSKNGQIKAALHLLQEMEKSS------VQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 127 KDKGI-----NANTL--------------------------------------LCKKTKL 143
            ++GI       N+L                                      LCK+ ++
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRI 281

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           +EA  +L +M +RG  P I TY  L+ GYC    V+ A  LF+ M ++G  PDV +Y+VL
Sbjct: 282 LEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVL 341

Query: 204 INGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMKLCNV 240
           I+GYCK   V+EAM + +E+              +++G          KK+ +EM     
Sbjct: 342 IDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ 401

Query: 241 VPETFTCNIFIDGLCKNGHVLEVM-----------------------------------E 265
            P+  T NI ID LCK G +LE +                                   +
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKD 461

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +F  +  S  E  +  +N LI G CK  + + A  LF ++  KNL+ D+ +YN LI  L 
Sbjct: 462 IFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLC 521

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             G+I     LL  M ++G + DV T+N L+ +F + +
Sbjct: 522 NLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQ 559



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 128/250 (51%), Gaps = 20/250 (8%)

Query: 122 LFMEMKDKGINAN----TLLC----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF +++ KGI+ +    T+L      ++    A  LL  +++ G  P + T+  ++NG+C
Sbjct: 77  LFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFC 136

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
           + G +  A+    ++  +G++ D F+Y  LING  KN  ++ A++            +  
Sbjct: 137 INGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALH------------LLQ 184

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM+  +V P     +  IDGLCK+G V + + L   +      L    +NSLI GCC  G
Sbjct: 185 EMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVG 244

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
            ++  ++L  K+  +N+  D   +NILI AL KEG+I +   +L  M + G   D+ T+N
Sbjct: 245 RWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYN 304

Query: 354 TLMISFLQKE 363
            LM  +  +E
Sbjct: 305 ALMEGYCSRE 314



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 115/266 (43%), Gaps = 39/266 (14%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++L AL      +++  +P N VT+N+++ G+C+  N+  A  +  +M   G  P++   
Sbjct: 420 RILEALGVLVMMMKKGVKP-NIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNY 478

Query: 63  DTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGI------------ 95
           + LI G  +T  ++  + L +EM               ++G+ + G I            
Sbjct: 479 NVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCD 538

Query: 96  --YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVE 145
               P+V  Y  L+D  CK +  D+   LF ++ + GI  +          LCK  KL  
Sbjct: 539 SGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKM 597

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A   L+ ++  G +P + TYT L+N  C  G    A+ L   M      PD  ++ ++I 
Sbjct: 598 AEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIG 657

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKI 231
              +    ++A  +  EMI  G   I
Sbjct: 658 VLLQRNETDKAEKLREEMIARGLVNI 683


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 170/342 (49%), Gaps = 24/342 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ SLI+G C    +  A   + KM + G  P+V T   +I  L     ++   K  +E
Sbjct: 12  VTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE 71

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK----GINANTL---L 137
           M N          PNV  Y  LIDGLCK   VD+   L  +M+ K     +  N+L   L
Sbjct: 72  MANRN------LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGL 125

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  +  EA  LLE M+  G  P IFTYT L+ G+C   K + A+ +F+ +  +GF PDV
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +YS LI+G CK   ++EA+++   MI +G           + +P T T N  I G C+ 
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSG-----------SCMPNTVTYNSLISGFCRM 234

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + E M L   +  +     V  + +L+ G CK    + A +L N+++ K L  DVV +
Sbjct: 235 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTF 294

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             L+  L +E ++    ++L  M    C+  V T+NT++  +
Sbjct: 295 TSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGY 336



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 177/378 (46%), Gaps = 64/378 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKM--------ATF--------------------- 53
           N VT+  LI G C  G + +A  L+ KM         T+                     
Sbjct: 80  NVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLE 139

Query: 54  -----GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108
                GC P++ T  TLITG  ++   +  L++ +++V         ++P+V  Y  LID
Sbjct: 140 EMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV------ARGFRPDVVTYSCLID 193

Query: 109 GLCKDRLVDQTKDLFMEMKDKG------INANTLL---CKKTKLVEANRLLELMMQRGLN 159
           GLCK+  + +  DLF  M   G      +  N+L+   C+  K+ EA  LLE M + G +
Sbjct: 194 GLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSS 253

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + TYT L+NG+C + +++ A  L + M RKG  PDV +++ L++G C+   + +A++ 
Sbjct: 254 PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH- 312

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                      I  EM+  +  P  +T N  +DG C+   + E  +    LE  +C   V
Sbjct: 313 -----------ILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNV 359

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             FN +IRG CK      A EL  +   +    DVV Y  +I  L +E ++ +   +   
Sbjct: 360 VSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRK 419

Query: 340 M-EENGCALDVDTFNTLM 356
           M EE GC  +  T++TL+
Sbjct: 420 MLEEPGCLPNSITYSTLV 437



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 174/380 (45%), Gaps = 69/380 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLI G C      +A  L+++M   GC P++ T  TLITG  ++   +  L++ ++
Sbjct: 116 VTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQ 175

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTLL- 137
           +V         ++P+V  Y  LIDGLCK+  + +  DLF  M   G      +  N+L+ 
Sbjct: 176 LV------ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 229

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             C+  K+ EA  LLE M + G +P + TYT L+NG+C + +++ A  L + M RKG  P
Sbjct: 230 GFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTP 289

Query: 196 DV-----------------------------------FSYSVLINGYCKNFNVEEAMNVS 220
           DV                                   ++Y+ +++GYC+   +EEA    
Sbjct: 290 DVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEAR--- 346

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                   K +  EM   +  P   + NI I GLCK     E MEL        C   V 
Sbjct: 347 --------KFMLEEM---DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVV 395

Query: 281 IFNSLIRGCCKFGIFEIASELFNK-LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
           ++ ++I G C+    + A  ++ K L     + + + Y+ L+  L   G + +    +  
Sbjct: 396 MYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYI-- 453

Query: 340 MEENGCALDVDTFNTLMISF 359
             E GC  ++ T+N L+ +F
Sbjct: 454 --EKGCVPNIGTYNLLIDAF 471



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 127/260 (48%), Gaps = 27/260 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  FG  I+      N VT+NSLI GFC  G + +A  L+++MA  G  P+V T  TL+
Sbjct: 204 AIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLM 263

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  +   ++    L  +M        G+  P+V  + SL+DGLC++  +     +  EM
Sbjct: 264 NGFCKLARLDDAYDLLNQMTR-----KGL-TPDVVTFTSLMDGLCRENRLSDAVHILGEM 317

Query: 127 KDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           + K  +      NT+L   C+  +L EA +   ++ +    P + ++  ++ G C V + 
Sbjct: 318 RRKSCSPTVYTYNTILDGYCRANQLEEARKF--MLEEMDCPPNVVSFNIMIRGLCKVNRS 375

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + A+ L +   R+   PDV  Y+ +I+G C+   V+EA  V R+M+         E   C
Sbjct: 376 SEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKML---------EEPGC 426

Query: 239 NVVPETFTCNIFIDGLCKNG 258
             +P + T +  + GLC  G
Sbjct: 427 --LPNSITYSTLVTGLCNAG 444



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 79/200 (39%), Gaps = 48/200 (24%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           TYT L+ G C V ++  A+     M  KGF PDV++Y+ +I+  C    + EA       
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA------- 65

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                +K   EM   N+ P   T  + IDGL                             
Sbjct: 66  -----RKFLEEMANRNLTPNVVTYTVLIDGL----------------------------- 91

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
                 CK G  + A  L +K+  K  V   V YN LI  L K  +  +   LL  M  +
Sbjct: 92  ------CKGGRVDEAVALLSKMR-KKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYS 144

Query: 344 GCALDVDTFNTLMISFLQKE 363
           GC  D+ T+ TL+  F + +
Sbjct: 145 GCIPDIFTYTTLITGFCKSK 164



 Score = 38.1 bits (87), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 35/83 (42%)

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
           +C      + SLI+G CK    E A     K+  K    DV  Y  +IHAL  E ++ + 
Sbjct: 6   SCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 334 NYLLLSMEENGCALDVDTFNTLM 356
              L  M       +V T+  L+
Sbjct: 66  RKFLEEMANRNLTPNVVTYTVLI 88


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 180/384 (46%), Gaps = 51/384 (13%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C  P+N +T+N LI G C  G +  A++++K M T GC+PN  T   LI G  R  NM  
Sbjct: 273 CGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGR 332

Query: 78  TLKLHQEM---------------VNGMGD---------------FGGIYKPNVFCYGSLI 107
            L+L  EM               +NG+                 F G+ KPNV  Y +LI
Sbjct: 333 ALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGL-KPNVVVYSTLI 391

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLN 159
            G   +  +++ + L   M   G+  +        + L K  K+ EA+  L  +  RGL 
Sbjct: 392 MGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK 451

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P   T+   + GY   GK+  A   FD M   G MP+   Y+VLING+ K  N+ EA++ 
Sbjct: 452 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS- 510

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                      IF  +    V+P+  TC+ FI GL KNG V E +++F  L+       V
Sbjct: 511 -----------IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 559

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             ++SLI G CK G  E A EL +++  K +  ++  YN L+  L K G I++   L   
Sbjct: 560 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 619

Query: 340 MEENGCALDVDTFNTLMISFLQKE 363
           M E G   D  T++T++  + + E
Sbjct: 620 MPEKGLEPDSVTYSTMIDGYCKSE 643



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 172/371 (46%), Gaps = 28/371 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T K+  A   F   +     P N+  +  LI G    GN+ +A  + + +   G  P+V 
Sbjct: 467 TGKMTEAAKYFDEMLDHGLMP-NNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQ 525

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           TC   I GL + G +   LK+  E+        G+  P+VF Y SLI G CK   V++  
Sbjct: 526 TCSAFIHGLLKNGRVQEALKVFSELKEK-----GLV-PDVFTYSSLISGFCKQGEVEKAF 579

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L  EM  KGI  N          LCK   +  A +L + M ++GL P   TY+ +++GY
Sbjct: 580 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 639

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C    V  A +LF  M  KG  P  F Y+ L++G CK  ++E+AMN+ REM+  GF    
Sbjct: 640 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-- 697

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                      T + N  IDG CK+  + E  +LF  +           + ++I   CK 
Sbjct: 698 -----------TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKA 746

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  E A+ LF ++  +NL+ D V Y  L++   K GQ  +   L   M   G   D  T+
Sbjct: 747 GKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTY 806

Query: 353 NTLMISFLQKE 363
             ++ +  +++
Sbjct: 807 GLVIYAHCKED 817



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 29/302 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT++++I G+C   N+ +A  L  +M + G +P+    + L+ G  + G+M   + L 
Sbjct: 628 DSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLF 687

Query: 83  QEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
           +EM+  G              + +LIDG CK   + +   LF EM  K I  + +     
Sbjct: 688 REMLQKGFA--------TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTV 739

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               CK  K+ EAN L + M +R L     TYT L+ GY  +G+ +   ALF+ M  KG 
Sbjct: 740 IDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGV 799

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD  +Y ++I  +CK  N+ EA  +  E++  G            ++ +    ++ I  
Sbjct: 800 KPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKG------------MLTKGTIHDLLITA 847

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK   + E  +L   +     +  +   ++L+R   + G  + A+ +F  +    LV D
Sbjct: 848 LCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 907

Query: 314 VV 315
             
Sbjct: 908 TT 909



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 134/282 (47%), Gaps = 22/282 (7%)

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC------- 138
           +  MG+ G +  PN + Y  +  GLC+ + +++ K  F EM+  G+  +   C       
Sbjct: 197 LRSMGEKGLV--PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGF 254

Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            ++  + E  R+ ++M+  G+   + TY  L++G C  GK+  A  +   M   G  P+ 
Sbjct: 255 MREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNS 314

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            ++ +LI GYC+  N+  A+            ++ +EM+  N+VP   +    I+GLC  
Sbjct: 315 RTFCLLIEGYCREHNMGRAL------------ELLDEMEKRNLVPSAVSYGAMINGLCHC 362

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             +    +L   +  S  +  V ++++LI G    G  E A  L + +SC  +  D+  Y
Sbjct: 363 KDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCY 422

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N +I  L K G++++ +  LL ++  G   D  TF   ++ +
Sbjct: 423 NAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGY 464



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 122/269 (45%), Gaps = 24/269 (8%)

Query: 91  DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLL 150
           ++GG   P VF    LID   +  ++D+  ++F   K+  I  + + C           L
Sbjct: 150 NYGG-SSPVVF--DILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNS---------L 197

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             M ++GL P  +TYT +  G C   ++N A   F+ M + G  PD  + S LI+G+ + 
Sbjct: 198 RSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMRE 257

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
            +++E + +   M+             C +     T N+ I GLCK G + +  E+   +
Sbjct: 258 GDIDEVLRIKDVMVS------------CGIPINLITYNVLIHGLCKFGKMEKAAEILKGM 305

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
               C+     F  LI G C+      A EL +++  +NLV   V+Y  +I+ L     +
Sbjct: 306 ITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDL 365

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISF 359
              N LL  M  +G   +V  ++TL++ +
Sbjct: 366 SLANKLLEKMTFSGLKPNVVVYSTLIMGY 394



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 111/238 (46%), Gaps = 39/238 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM---NLTLKL 81
           ++FN+LI G+C    I++ASQL ++M      P+  T  T+I    + G M   NL  K 
Sbjct: 699 LSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKE 758

Query: 82  HQEM---------------VNGMGDFGGIY-----------KPNVFCYGSLIDGLCK-DR 114
            QE                 N +G    ++           KP+   YG +I   CK D 
Sbjct: 759 MQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDN 818

Query: 115 LVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
           LV+  K L  E+  KG+           T LCK+  L EA++LL+ M + GL P +   +
Sbjct: 819 LVEAFK-LRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACS 877

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
            L+  +   GK++ A  +F+ +   G +PD  +   L+NG   + + E+A N+ ++++
Sbjct: 878 TLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 935


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 190/404 (47%), Gaps = 72/404 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF +++ G C+EGN+  A + V  +   G   +  T   +I GL + G+ +  L   ++
Sbjct: 149 VTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKK 208

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     +       +V  Y +++DGLCKD +V +  DLF +M  KGI  +          
Sbjct: 209 MEEQNCNL------DVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHG 262

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVI---------------------------------- 162
           LC   +  EA  LL  MM++G+ P +                                  
Sbjct: 263 LCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHD 322

Query: 163 -FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
             TY+ ++  +C++ ++  A+ +FD M RKG +P++ +Y+ LI+G+C+  N+ +AM    
Sbjct: 323 VVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLG 382

Query: 222 EMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           EM+ NG                        K++F  M     +P+  TC I +DGL K  
Sbjct: 383 EMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCH 442

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              E M LF  LE  N +L + I++ ++ G C  G    A ELF+ LS K +  DVV YN
Sbjct: 443 FHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYN 502

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           I+I+ L KEG +     LL+ MEENGC  D  T+N  +   L++
Sbjct: 503 IMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRR 546



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 138/315 (43%), Gaps = 27/315 (8%)

Query: 51  ATFGCRPNVTTCDT-LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109
           +TF    ++ T     +  LR   ++++ L  + +MV  M  F     P V  +  L   
Sbjct: 34  STFSTYASINTSRAQFLDSLRNVKSVDVALDFYHKMVT-MKPF-----PCVKDFNLLFGI 87

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPV 161
           + K +       L   M   G+  N          LC+    V    +L LM + G+ P 
Sbjct: 88  VAKMKHYTTAISLIKHMSYIGVKPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPS 147

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           I T+T ++NG C+ G V  AI   D +   G+  D ++   +ING CK  +   A++  +
Sbjct: 148 IVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLK 207

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
           +M          E + CN+  +    N  +DGLCK+G V E  +LF  +     +  +  
Sbjct: 208 KM----------EEQNCNL--DVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFT 255

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N LI G C F  ++ A+ L   +  K ++ DV  +N++     K G I +   +   M 
Sbjct: 256 YNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMG 315

Query: 342 ENGCALDVDTFNTLM 356
             G   DV T+++++
Sbjct: 316 HMGIEHDVVTYSSII 330



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 112/250 (44%), Gaps = 46/250 (18%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F   IR+   P N VT+ SLI G+C   N+  A   + +M   G  PN+ T +TLI
Sbjct: 342 AMEVFDLMIRKGCLP-NIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLI 400

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G         +E+   M   G +  P++     ++DGL K     +   LF E+
Sbjct: 401 GGFCKAGKPVAA----KELFFVMHKHGQL--PDLQTCAIILDGLFKCHFHSEAMSLFREL 454

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           +                          M   L+ +I  Y+ +LNG C  GK+N A+ LF 
Sbjct: 455 EK-------------------------MNSDLDIII--YSIILNGMCSSGKLNDALELFS 487

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            ++ KG   DV +Y+++ING CK   +++A ++  +M  NG              P+  T
Sbjct: 488 YLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENG------------CPPDECT 535

Query: 247 CNIFIDGLCK 256
            N+F+ GL +
Sbjct: 536 YNVFVQGLLR 545



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 15/212 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+   G  +     P N VT+N+LI GFC  G    A +L   M   G  P++ TC  ++
Sbjct: 377 AMYFLGEMVNNGLDP-NIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIIL 435

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL +    +  + L +E+     D       ++  Y  +++G+C    ++   +LF  +
Sbjct: 436 DGLFKCHFHSEAMSLFRELEKMNSDL------DIIIYSIILNGMCSSGKLNDALELFSYL 489

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             KG+  + +        LCK+  L +A  LL  M + G  P   TY   + G     ++
Sbjct: 490 SSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEI 549

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
           + +      M  KGF  +  +  +LIN +  N
Sbjct: 550 SKSTKYLMFMKGKGFRANATTTKLLINYFSAN 581


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 194/401 (48%), Gaps = 57/401 (14%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVT-FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           V+ A   F   +R    P+  ++ FN L+ G     +      L  KM   G  P++ T 
Sbjct: 71  VIQAFHFFDLMMRS--HPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTL 128

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVFCYGSLIDGL---CKDRL 115
           + L   L    N+N        +  G+    GI    Y P++  Y +LI GL   CK   
Sbjct: 129 NILANCL---CNLN-------RVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGH 178

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
            D+ K++F EMK +G+  N +         C   KL E+ RL   M+ +G+ P +  +  
Sbjct: 179 EDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNV 238

Query: 168 LLNGYCLVGKV---NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM- 223
           L++  C  GK+   + A  LF SM  KG   +  SY++LINGYCK + VEEAMN+  EM 
Sbjct: 239 LIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMP 298

Query: 224 -------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
                        +L G           K+F  MK   +  ++    IF+DGLCKNG + 
Sbjct: 299 QVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLF 358

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           E MELF  L+  N +L  E ++ LI G CK G  EIA E F +LS + L  +VV  NI+I
Sbjct: 359 EAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMI 418

Query: 322 HALGKEGQIKKENYL---LLSMEENGCALDVDTFNTLMISF 359
           H   +  Q+ K N L   +  MEENGC  D+ T+NTL+  F
Sbjct: 419 HGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGF 459



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 135/294 (45%), Gaps = 26/294 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N ++++SL+ GFC  G + ++ +L  +M   G +PN+   + LI  L + G +   L   
Sbjct: 197 NVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIG-DLSSA 255

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
           +++   M   G  +  N   Y  LI+G CK   V++  +L+ EM   G   N        
Sbjct: 256 RKLFLSMPSKGCEH--NEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLL 313

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           T L +  K+ +AN+L  +M   G++     Y   L+G C  G +  A+ LF+ +    F 
Sbjct: 314 TGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFK 373

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  SYS LI+G CK   VE A    +++   G +            P   TCNI I G 
Sbjct: 374 LDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQ------------PNVVTCNIMIHGF 421

Query: 255 CKNGHVLEVMELFPTLEI---SNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           C+   V +   LF  +E    + C   +  +N+L+RG C+    E    L +K+
Sbjct: 422 CRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 475


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 188/371 (50%), Gaps = 26/371 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   ++  Y P N +T  +L+KGFC+   +++A      +   G   N  +  TLI
Sbjct: 125 AFSIFAKILKMGYHP-NTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLI 183

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G     L++ +++       G +   +V  Y ++IDGLCKD+LV+   +L+ EM
Sbjct: 184 NGLCKIGETRAALQMLRQIE------GKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEM 237

Query: 127 KDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             K I+      N+L+   C   +  EA  LL  M+ + +NP ++T+  L++  C  GK+
Sbjct: 238 ITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKI 297

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI------- 231
             A +    M ++G MPDV +YS L++GYC    V +A +V   +++NGF KI       
Sbjct: 298 KEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHV-YSIVINGFCKIKMVDKAL 356

Query: 232 --FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
             F EM+   + P+T T N  IDGLCK+G +    EL   +  S     +  +NSLI   
Sbjct: 357 SLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDAL 416

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK    + A  L  K+  + +  D+  YNILI  L K+G++K    +   +   G  L V
Sbjct: 417 CKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTV 476

Query: 350 DTFNTLMISFL 360
            T+ T+MI+ L
Sbjct: 477 WTY-TIMINGL 486



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            ++ +I GFC    +  A  L  +M      P+  T ++LI GL ++G ++       E+
Sbjct: 338 VYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYA----WEL 393

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           V+ M D G     ++  Y SLID LCK+  VD+   L  ++KD+GI  +          L
Sbjct: 394 VDEMRDSGQ--PADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGL 451

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ +L +A  + + ++ +G N  ++TYT ++NG CL G +N A  L   M   G +PD 
Sbjct: 452 CKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDA 511

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
            +   +I    +N   E A  + REMI  G 
Sbjct: 512 VTCETIIRALFENDKNERAEKLLREMIARGL 542



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 27/225 (12%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+ P I + + L+N YC +G++  A ++F  + + G+ P+  + + L+ G+C N  V+EA
Sbjct: 101 GIKPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEA 160

Query: 217 MNVSREMILNGFKKIFNEMK-------LCN------------------VVPETFTCNIFI 251
           ++    ++  GF   FN++        LC                   V  +    +  I
Sbjct: 161 LHFHDHVLALGFH--FNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTII 218

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           DGLCK+  V +  EL+  +        V   NSLI G C  G F+ A  L  ++  KN+ 
Sbjct: 219 DGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNIN 278

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            DV  +NIL+ AL KEG+IK+    +  M + G   DV T+++LM
Sbjct: 279 PDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLM 323



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 16/153 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R   +P + +T+NSLI   C   ++  A  LVKK+   G + ++ T + LI GL + G 
Sbjct: 397 MRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGR 456

Query: 75  MNLTLKLHQE-MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
           +     + Q+ ++ G       Y   V+ Y  +I+GLC + L+++ + L  +M+D G   
Sbjct: 457 LKDAQVIFQDLLIKG-------YNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVP 509

Query: 134 NTLLCKKT--------KLVEANRLLELMMQRGL 158
           + + C+          K   A +LL  M+ RGL
Sbjct: 510 DAVTCETIIRALFENDKNERAEKLLREMIARGL 542


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 190/379 (50%), Gaps = 38/379 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R    P + V FN LI  +  +  + +A  +  KM   G  PNV T   +I  L ++G+
Sbjct: 363 VRNGIHPDHHV-FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGS 421

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++  +   ++M+    D G    PN+  Y SLI  LC     D+ ++L +EM D+GI  N
Sbjct: 422 VDDAMLYFEQMI----DEG--LTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLN 475

Query: 135 TLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           T+         CK+ +++E+ +L +LM++ G+ P + TY+ L++GYCL GK++ A  L  
Sbjct: 476 TIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLS 535

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------------------ 228
           SM   G  PD  +Y+ LINGYC+   +++A+ + +EM+ +G                   
Sbjct: 536 SMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTR 595

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                K+++  +       E  T NI + GLCKN    E + +F  L +++ +L    FN
Sbjct: 596 RTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFN 655

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            +I    K G  + A +LF   S   LV +   Y ++   +  +G +++ + L  SME+N
Sbjct: 656 IMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDN 715

Query: 344 GCALDVDTFNTLMISFLQK 362
           GC +D    N ++   LQ+
Sbjct: 716 GCTVDSGMLNFIVRELLQR 734



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 156/344 (45%), Gaps = 28/344 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++ ++I GF  EG+   A     +M      P+V T  ++I  L +   M+  +++   
Sbjct: 197 VSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTT 256

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           MV NG+        PN   Y S++ G C      +      +M+  G+  + +       
Sbjct: 257 MVKNGV-------MPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMD 309

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LCK  +  EA ++ + M +RGL P I TY  LL GY   G +    AL D M R G  P
Sbjct: 310 YLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP 369

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D   +++LI  Y K   V+EAM V            F++M+   + P   T    I  LC
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLV------------FSKMRQHGLNPNVVTYGAVIGILC 417

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K+G V + M  F  +        + ++ SLI   C F  ++ A EL  ++  + +  + +
Sbjct: 418 KSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTI 477

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +N +IH+  KEG++ +   L   M   G   +V T++TL+  +
Sbjct: 478 FFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGY 521



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 168/381 (44%), Gaps = 36/381 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ +++ +R +  +TF  L+KG C +    DA  +V ++M    C P+V +C  L+ G
Sbjct: 109 ALGNVVKKGFR-VEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKG 167

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +   D GG   P+V  Y ++I+G  K+   D+    + EM D
Sbjct: 168 LCDENRSQEALELLHMMAD---DRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLD 224

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           + I+ + +        LCK   + +A  +L  M++ G+ P   TY  +L+GYC   +   
Sbjct: 225 RRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKE 284

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILN 226
           AI     M   G  PDV +Y+ L++  CKN    EA  +   M              +L 
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344

Query: 227 GF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           G+           + + M    + P+    NI I    K   V E M +F  +       
Sbjct: 345 GYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNP 404

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  + ++I   CK G  + A   F ++  + L  +++ Y  LIH+L    +  K   L+
Sbjct: 405 NVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELI 464

Query: 338 LSMEENGCALDVDTFNTLMIS 358
           L M + G  L+   FN+++ S
Sbjct: 465 LEMLDRGICLNTIFFNSIIHS 485



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 137/334 (41%), Gaps = 41/334 (12%)

Query: 49  KMATFGC---RPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVF 101
           +MA  G     P V T   LI    R G ++L          G    G +    ++    
Sbjct: 74  RMARAGAGKVTPTVHTYGILIGCCCRAGRLDL----------GFAALGNVVKKGFRVEAI 123

Query: 102 CYGSLIDGLCKDRLVDQTKDLFME-MKDKGINANTL--------LCKKTKLVEANRLLEL 152
            +  L+ GLC D+      D+ +  M +     +          LC + +  EA  LL +
Sbjct: 124 TFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHM 183

Query: 153 MMQR---GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           M      G  P + +YT ++NG+   G  + A + +  M  +   PDV +YS +I   CK
Sbjct: 184 MADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCK 243

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              +++AM V   M+ NG            V+P   T N  + G C +    E +     
Sbjct: 244 GQAMDKAMEVLTTMVKNG------------VMPNCMTYNSILHGYCSSEQPKEAIGFLKK 291

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     E  V  +NSL+   CK G    A ++F+ ++ + L  D+  Y  L+     +G 
Sbjct: 292 MRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGA 351

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + + + LL  M  NG   D   FN L+ ++ ++E
Sbjct: 352 LVEMHALLDLMVRNGIHPDHHVFNILICAYAKQE 385



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 132/296 (44%), Gaps = 34/296 (11%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V+ +   F   +R   +P N +T+++LI G+C+ G + +A++L+  M + G +P+  T 
Sbjct: 491 RVIESEKLFDLMVRIGVKP-NVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTY 549

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI G  R   M+  L L +EMV+      G+  PN+  Y  ++ GL   R     K+L
Sbjct: 550 NTLINGYCRVSRMDDALALFKEMVS-----SGV-SPNIITYNIILQGLFHTRRTAAAKEL 603

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           ++ +   G              LCK     EA R+ + +    L     T+  ++     
Sbjct: 604 YVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 663

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           VG+ + A  LF + +  G +P+ ++Y ++            A N+  + +L    ++F  
Sbjct: 664 VGRNDEAKDLFVAFSSNGLVPNYWTYRLM------------AENIIGQGLLEELDQLFFS 711

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLE-------VMELFPTLEISNCELFVEIFN 283
           M+      ++   N  +  L + G +         + E   +LE S   LF+++ +
Sbjct: 712 MEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLS 767


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 176/369 (47%), Gaps = 40/369 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL-KLHQEM 85
           FN LI      G + +A  +  +M   G  PNV T  T+I  L R G +   + KL Q +
Sbjct: 450 FNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMI 509

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------- 136
             G+       KPN   Y SLI G C    + + K+L  EM D+GI    +         
Sbjct: 510 SIGL-------KPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHS 562

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC + +++ A  +  L++  G  P IFT+  L++GYCLVGK++ A  + D+M   G  PD
Sbjct: 563 LCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPD 622

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFN 233
           V +YS LINGY K+  +++ + + REM              +L+G          KK+F+
Sbjct: 623 VVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFH 682

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM          T  I + GLC+N    E + LF  L   N +  + I N++I    K  
Sbjct: 683 EMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVK 742

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A +LF  +S   LV +   Y ++I  L KEG +++ + +  SME+ GCA      N
Sbjct: 743 RREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLN 802

Query: 354 TLMISFLQK 362
            ++   LQK
Sbjct: 803 DIIRMLLQK 811



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 152/347 (43%), Gaps = 27/347 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           ++N++IK  C     ++A  ++ +M    GC P+V +   +I GL   G ++    L  E
Sbjct: 238 SYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNE 297

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT--- 141
           MV       G+  PNV  Y S++  LCK R +D+ + +  +M D  I  + +        
Sbjct: 298 MVQK-----GVV-PNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHG 351

Query: 142 -----KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
                +  EA ++ + M + GL P I T+  L++  C   +   A  +F S+A KG  PD
Sbjct: 352 YSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPD 411

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + SYS+L++GY       +  N+   M  NG            +V ++   NI I+   K
Sbjct: 412 IISYSILLHGYATEGRFVDMNNLFHSMTDNG------------IVADSHCFNILINAHAK 459

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E + +F  +        V  + ++I   C+ G    A E  +++    L  + V 
Sbjct: 460 RGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVV 519

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y+ LI      G + K   L+  M + G      TF + +I  L  E
Sbjct: 520 YHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNE 566



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 157/361 (43%), Gaps = 28/361 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   +++   P N VT+NS++   C    +  A  ++++M     +P+  T   +I G  
Sbjct: 295 FNEMVQKGVVP-NVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYS 353

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
             G      K+ +EM       G I  P++  + SL+D LCK +   +  ++F  +  KG
Sbjct: 354 CLGRWKEAAKMFKEMTRE----GLI--PDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKG 407

Query: 131 -----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                I+ + LL     + + V+ N L   M   G+      +  L+N +   G ++ A+
Sbjct: 408 HKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEAL 467

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            +F  M  +G  P+V +Y+ +I   C+   + +AM    +MI  G K            P
Sbjct: 468 LIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLK------------P 515

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPT-LEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
            T   +  I G C +G +++  EL    ++       +  F+S+I   C  G    A ++
Sbjct: 516 NTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDV 575

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           FN +       D+  +N LI      G++ K   +L +M   G   DV T++TL+  + +
Sbjct: 576 FNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFK 635

Query: 362 K 362
            
Sbjct: 636 S 636



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 40/344 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGC-RPNVTTCDTLITGLRRTGN-MNLTLK 80
           N V ++SLI+GFC  G++  A +LV +M   G  RPN+T   ++I  L   G  MN    
Sbjct: 516 NTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNA--- 572

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
             Q++ N +   G   +P++F + SLIDG C    +D+   +   M   G     +  +T
Sbjct: 573 --QDVFNLVIHIGD--RPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYST 628

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+    K  ++ +   L   M+ + + P   TY+ +L+G    G+ + A  +F  M   G
Sbjct: 629 LINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESG 688

Query: 193 FMPDVFSYSVLINGYCKN---------FNVEEAMNVSREM-ILNGF-------------K 229
               + +Y++++ G C+N         F+   AMN+  E+ ILN                
Sbjct: 689 TAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAH 748

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            +F  +    +VP   T  + I  L K G V E   +F ++E + C     + N +IR  
Sbjct: 749 DLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRML 808

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            + G    A    +K+    +  +    ++LI     +G+ +++
Sbjct: 809 LQKGEIVKAGYYMSKVDGTIISLEASTTSLLISLFASKGRYREQ 852



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 128/303 (42%), Gaps = 57/303 (18%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFME-----MKDKGINANTL----------------- 136
            V  YG L+D  C+ R  D     F       ++  GI  NT                  
Sbjct: 164 TVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSML 223

Query: 137 ----------------------LCKKTKLVEA-NRLLELMMQRGLNPVIFTYTPLLNGYC 173
                                 LC  ++  EA + LL +    G +P + +YT +++G  
Sbjct: 224 LHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLF 283

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
           + G+++ A  LF+ M +KG +P+V +Y+ +++  CK   +++A  V R+M  N       
Sbjct: 284 MEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDN------- 336

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                ++ P+  T    I G    G   E  ++F  +        +  FNSL+   CK  
Sbjct: 337 -----SIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHK 391

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A+E+F+ ++ K    D+++Y+IL+H    EG+    N L  SM +NG   D   FN
Sbjct: 392 RSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFN 451

Query: 354 TLM 356
            L+
Sbjct: 452 ILI 454


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 195/419 (46%), Gaps = 73/419 (17%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           FG  +++ + P N +TFN+LIKG C++G+I  A     K+   G   +  +  TLI GL 
Sbjct: 128 FGKILKKGFDP-NAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLC 186

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G +   L+L + +       G + +PN   Y  +ID +CK +LV+   DL+ +M  K 
Sbjct: 187 KVGRITAALQLLKRVD------GKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKR 240

Query: 131 INA-----NTLL--------------------------------------CKKTKLVEAN 147
           I+      N+L+                                      CK+ K+ EA 
Sbjct: 241 ISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAK 300

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L + M++ +   + TY  L++GYCLV ++N A  +FDSMA +G + +V SY+ +ING 
Sbjct: 301 MMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGL 360

Query: 208 CKNFNVEEAMNVSREM--------------ILNGFK---------KIFNEMKLCNVVPET 244
           CK   V+EA+N+  EM              +++G           K+ +EM      P  
Sbjct: 361 CKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNI 420

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T N  +D LCKN HV + + L   L+       +  +  LI+G C+ G  E A ++F  
Sbjct: 421 ITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFED 480

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           L  K    DV  Y ++I     +G       LL  ME+NGC  +  T+  +++S  +K+
Sbjct: 481 LLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKD 539



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 37/244 (15%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT+NSL+ G+C+   I  A  +   MA+ G   NV +  T+I GL +   ++  + L
Sbjct: 313 LDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNL 372

Query: 82  HQEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLCK 112
            +EM               ++G+G  G I                PN+  Y S++D LCK
Sbjct: 373 FEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCK 432

Query: 113 DRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFT 164
           +  VD+   L   +KD+GI  +          LC+  KL +A ++ E ++ +G N  ++T
Sbjct: 433 NHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYT 492

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           YT ++ G+C+ G  + A+AL   M   G +P+  +Y ++I    +    + A  + REMI
Sbjct: 493 YTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMI 552

Query: 225 LNGF 228
             G 
Sbjct: 553 ARGL 556



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 158/368 (42%), Gaps = 76/368 (20%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEM-VNGM-GDFGGIYKPNVFCYGSLIDGLCKDR 114
           P +   + +++ L +  + +  L LHQ+M +NG+  DF        F +  LI+   +  
Sbjct: 68  PPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDF--------FTFNILINCFSQLG 119

Query: 115 LVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
           L   +  +F ++  KG + N +        LC K  + +A    + ++ +G +    +Y 
Sbjct: 120 LNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYG 179

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI-- 224
            L+NG C VG++  A+ L   +  K   P+   Y+++I+  CK   V +A ++  +M+  
Sbjct: 180 TLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAK 239

Query: 225 ------------LNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE- 262
                       + GF           + ++M L N+ P  +T +I +D  CK G V E 
Sbjct: 240 RISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEA 299

Query: 263 ----------------------------------VMELFPTLEISNCELFVEIFNSLIRG 288
                                               ++F ++        V+ + ++I G
Sbjct: 300 KMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMING 359

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            CK  + + A  LF ++ C+ ++ +VV YN LI  LGK G+I     L+  M + G   +
Sbjct: 360 LCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPN 419

Query: 349 VDTFNTLM 356
           + T+N+++
Sbjct: 420 IITYNSIL 427



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 16/148 (10%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           +P N +T+NS++   C   ++  A  L+  +   G RP++ T   LI GL ++G +    
Sbjct: 416 QPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQ 475

Query: 80  KLHQE-MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG--INANTL 136
           K+ ++ +V G       Y  +V+ Y  +I G C   L D    L  +M+D G   NA T 
Sbjct: 476 KVFEDLLVKG-------YNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTY 528

Query: 137 ------LCKKTKLVEANRLLELMMQRGL 158
                 L +K +   A +LL  M+ RGL
Sbjct: 529 EIVILSLFEKDENDMAEKLLREMIARGL 556



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 12/209 (5%)

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
            L+  +   P I  +  +L+        + A++L   M   G + D F++++LIN + + 
Sbjct: 59  SLLHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQL 118

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                + +V  +++  GF             P   T N  I GLC  GH+ + +     +
Sbjct: 119 GLNSLSFSVFGKILKKGFD------------PNAITFNTLIKGLCLKGHIHQALNFHDKV 166

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                 L    + +LI G CK G    A +L  ++  K +  + V YN++I  + K   +
Sbjct: 167 VAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLV 226

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISF 359
                L   M     + D  T N+L+  F
Sbjct: 227 NDAFDLYSQMVAKRISPDDFTCNSLIYGF 255



 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + K+  A   F   + + Y  L+  T+  +I+GFC++G    A  L+ KM   GC PN  
Sbjct: 468 SGKLEDAQKVFEDLLVKGYN-LDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAK 526

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMV 86
           T + +I  L      ++  KL +EM+
Sbjct: 527 TYEIVILSLFEKDENDMAEKLLREMI 552


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 185/344 (53%), Gaps = 30/344 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++N +I G C EG +++ S ++ +M   G   +  T +TLI G  + GN +  L +H
Sbjct: 274 NLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TL 136
            EM+ +G+        P+V  Y SLI  +CK   +++  +   +M+ +G+  N     TL
Sbjct: 334 AEMLRHGLS-------PSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTL 386

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +    +K  + EA R+L+ M+  G +P + TY  L+NG+C+ GK+  AIA+ + M  KG 
Sbjct: 387 VDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGL 446

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PDV SYS +++G+C++++V+EA+ V R+M+  G K            P+T T +  I G
Sbjct: 447 TPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIK------------PDTITYSSLIQG 494

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C+     E  +LF  +           + +LI   C  G  + A +L N++  K ++ D
Sbjct: 495 FCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPD 554

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSM-EENGCALDVDTFNTLM 356
           VV Y++LI+ L K+ + ++   LLL +  E     DV T++TL+
Sbjct: 555 VVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDV-TYHTLI 597



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 174/365 (47%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N LI+GFC+ GN+  A +   +M   GC PNV T +TLI G  +   ++   +L 
Sbjct: 204 NVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELL 263

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           + M        G+ +PN+  Y  +I+GLC++  + +   +  EM  +G     +  NTL+
Sbjct: 264 RSMA-----LKGL-EPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLI 317

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+    +A  +   M++ GL+P + TYT L++  C  G +N A    D M  +G  
Sbjct: 318 KGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLC 377

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------I 231
           P+  +Y+ L++G+ +   + EA  V +EMI NGF                         +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAV 437

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
             +MK   + P+  + +  + G C++  V E + +   +     +     ++SLI+G C+
Sbjct: 438 LEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCE 497

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               + A +LF+++    L  D   Y  LI+A   EG ++K   L   M E G   DV T
Sbjct: 498 QRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVT 557

Query: 352 FNTLM 356
           ++ L+
Sbjct: 558 YSVLI 562



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 174/392 (44%), Gaps = 83/392 (21%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL+     +R    P + +T+ SLI   C  GN+  A++ + +M   G  PN  T  TL+
Sbjct: 329 ALVMHAEMLRHGLSP-SVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLV 387

Query: 67  TGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLC-KDRLVDQTKDLFM 124
            G  + G MN   ++ +EM+ NG       + P+V  Y +LI+G C   ++VD    +  
Sbjct: 388 DGFSQKGYMNEAYRVLKEMIDNG-------FSPSVVTYNALINGHCIAGKMVDAIA-VLE 439

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           +MK+KG+  + +         C+   + EA R+   M+ +G+ P   TY+ L+ G+C   
Sbjct: 440 DMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQR 499

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           +   A  LFD M R G  PD F+Y+ LIN YC   ++++A+ +  EM+  G         
Sbjct: 500 RTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKG--------- 550

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMEL---------------FPTLEISNCE-LFVE 280
              V+P+  T ++ I+GL K     E   L               + TL I NC  +  +
Sbjct: 551 ---VLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTL-IENCSNIEFK 606

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA----------------- 323
              SLI+G C  G+   A ++F  +  KN   D  AYN++IH                  
Sbjct: 607 SVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEM 666

Query: 324 ------------------LGKEGQIKKENYLL 337
                             L KEG++ + N ++
Sbjct: 667 VKSGFLLHTVTVIALVKTLHKEGKVNELNSVI 698



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 111/217 (51%), Gaps = 12/217 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + M+Q  ++P +FTY  L+ G+CL G ++VA+  FD M +KG +P+V +Y+ LI+
Sbjct: 189 AENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLID 248

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           GYCK   +++   + R M L G +            P   + N+ I+GLC+ G + E+  
Sbjct: 249 GYCKLRKIDDGFELLRSMALKGLE------------PNLISYNVVINGLCREGRMKEISF 296

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +   +      L    +N+LI+G CK G F  A  +  ++    L   V+ Y  LIH++ 
Sbjct: 297 VLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMC 356

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           K G + +    L  M   G   +  T+ TL+  F QK
Sbjct: 357 KAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQK 393



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 26/332 (7%)

Query: 39  NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP 98
           NI  A  + K+M      PNV T + LI G    GN+++ L+    M       G +  P
Sbjct: 185 NISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKK----GCL--P 238

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLL 150
           NV  Y +LIDG CK R +D   +L   M  KG+  N +        LC++ ++ E + +L
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVL 298

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             M +RG +    TY  L+ GYC  G  + A+ +   M R G  P V +Y+ LI+  CK 
Sbjct: 299 TEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKA 358

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
            N+  A             +  ++M++  + P   T    +DG  + G++ E   +   +
Sbjct: 359 GNMNRAT------------EFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEM 406

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
             +     V  +N+LI G C  G    A  +   +  K L  DVV+Y+ ++    +   +
Sbjct: 407 IDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDV 466

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +   +   M   G   D  T+++L+  F ++
Sbjct: 467 DEALRVKRKMVAKGIKPDTITYSSLIQGFCEQ 498



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 139/311 (44%), Gaps = 77/311 (24%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI G C+ G + DA  +++ M   G  P+V +  T+++G  R+ +++  L++ ++
Sbjct: 416 VTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRK 475

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV       GI KP+   Y SLI G C+ R   +  DLF EM   G+  +          
Sbjct: 476 MVAK-----GI-KPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINA 529

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG------------------------- 171
            C +  L +A +L   M+++G+ P + TY+ L+NG                         
Sbjct: 530 YCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPS 589

Query: 172 -------------------------YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
                                    +C+ G +  A  +F+SM  K   PD  +Y+V+I+G
Sbjct: 590 DVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHG 649

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           +C+  ++ +A ++ +EM+ +GF            +  T T    +  L K G V E+  +
Sbjct: 650 HCRGGDIRKAYSLYKEMVKSGF------------LLHTVTVIALVKTLHKEGKVNELNSV 697

Query: 267 FPTLEISNCEL 277
              + + +CEL
Sbjct: 698 IANV-LRSCEL 707



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 21/270 (7%)

Query: 96  YKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEA 146
           + P V  Y +++D   +  R +   +++F EM    ++ N           C    L  A
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVA 224

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
            R  + M ++G  P + TY  L++GYC + K++    L  SMA KG  P++ SY+V+ING
Sbjct: 225 LRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVING 284

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            C+   ++E   V  EM   G+              +  T N  I G CK G+  + + +
Sbjct: 285 LCREGRMKEISFVLTEMNKRGYS------------LDEVTYNTLIKGYCKEGNFHQALVM 332

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +        V  + SLI   CK G    A+E  +++  + L  +   Y  L+    +
Sbjct: 333 HAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQ 392

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +G + +   +L  M +NG +  V T+N L+
Sbjct: 393 KGYMNEAYRVLKEMIDNGFSPSVVTYNALI 422



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 20/200 (10%)

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN-FNVEEAMNV 219
           V+ +Y+ L    CL+ K   A+++       GFMP V SY+ +++   ++  N+  A NV
Sbjct: 140 VVKSYSRL----CLIDK---ALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENV 192

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                       F EM    V P  FT NI I G C  G++   +  F  +E   C   V
Sbjct: 193 ------------FKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNV 240

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             +N+LI G CK    +   EL   ++ K L  ++++YN++I+ L +EG++K+ +++L  
Sbjct: 241 VTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTE 300

Query: 340 MEENGCALDVDTFNTLMISF 359
           M + G +LD  T+NTL+  +
Sbjct: 301 MNKRGYSLDEVTYNTLIKGY 320


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 27/345 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++ ++I G C    + +A +++ KM   GC+PNV T  TL+ G  R G+++  + 
Sbjct: 111 PPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAV- 169

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INAN 134
              E+V  M + G  Y+PN   Y +++ GLC  R +D    LF EM++ G         +
Sbjct: 170 ---ELVRKMTERG--YRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYS 224

Query: 135 TL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           T+   L K  K+ +A RL+E M+ +G +P + TY+ LL+G C  GK++ A AL   M R 
Sbjct: 225 TIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRS 284

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P++ +Y+ +I+G+CK   ++EA ++  EM+  G +            P   T  + +
Sbjct: 285 GCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQ------------PNVVTYTVLL 332

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           D  CK G   + + L   +        +  +NSL+   CK    E A +L + +  K  V
Sbjct: 333 DAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCV 392

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +VV+YN +I  L K  ++ +   LL  M  N C  D+ TFNT++
Sbjct: 393 PNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTII 437



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 176/366 (48%), Gaps = 27/366 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  AL  F         P +  T+++++      G + DA +LV+ M + GC PNV T 
Sbjct: 199 KLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTY 258

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            +L+ GL + G ++    L Q M            PN+  Y ++IDG CK   +D+   L
Sbjct: 259 SSLLHGLCKAGKLDEATALLQRMTRSG------CSPNIVTYNTIIDGHCKLGRIDEAYHL 312

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM D G   N +         CK  K  +A  L+E+M+++G  P +FTY  LL+ +C 
Sbjct: 313 LEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCK 372

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
             +V  A  L  SM +KG +P+V SY+ +I G CK   V E + +  +M+ N        
Sbjct: 373 KDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSN-------- 424

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
               N VP+  T N  ID +CK   V    ELF  ++ S C   +  +NSL+ G CK   
Sbjct: 425 ----NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 480

Query: 295 FEIASELFNKLSCKN-LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           F+ A  L  +++ K     D++ YN +I  L K  ++ +   L L M  +G A D  T++
Sbjct: 481 FDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYS 540

Query: 354 TLMISF 359
            ++ S 
Sbjct: 541 IVISSL 546



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 175/340 (51%), Gaps = 28/340 (8%)

Query: 29  SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV-N 87
           S+++G C  G   DA    ++M+   C P+  T +T+I GL ++  ++  ++L +EMV N
Sbjct: 15  SILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDN 73

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCK 139
           G       + PNVF Y +++ G CK   V+    L  +M  +G   + +        LCK
Sbjct: 74  G-------FAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCK 126

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             ++ EA R+++ M+QRG  P + TY  L++G+C VG ++ A+ L   M  +G+ P+  +
Sbjct: 127 LDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAIT 186

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+ +++G C    ++ A+ + +EM  +G           +  P+ FT +  +D L K+G 
Sbjct: 187 YNNIMHGLCSGRKLDSALQLFKEMEESG-----------SCPPDVFTYSTIVDSLVKSGK 235

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           V +   L   +    C   V  ++SL+ G CK G  + A+ L  +++      ++V YN 
Sbjct: 236 VDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNT 295

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +I    K G+I +  +LL  M + GC  +V T+  L+ +F
Sbjct: 296 IIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAF 335



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 185/398 (46%), Gaps = 61/398 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT++SL+ G C  G + +A+ L+++M   GC PN+ T +T+I G  + G ++    L 
Sbjct: 254 NVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLL 313

Query: 83  QEMVNG---------------------MGDFGGI--------YKPNVFCYGSLIDGLCKD 113
           +EMV+G                       D  G+        Y PN+F Y SL+D  CK 
Sbjct: 314 EEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKK 373

Query: 114 RLVDQTKDLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             V++   L   M  KG     ++ NT+   LCK TK+ E   LLE M+     P I T+
Sbjct: 374 DEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTF 433

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM-- 223
             +++  C   +V++A  LF+ +   G  P++ +Y+ L++G CK+   ++A  + REM  
Sbjct: 434 NTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTR 493

Query: 224 -------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
                        +++G           K+F +M    + P+  T +I I  LCK   + 
Sbjct: 494 KQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMD 553

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           E   +   +  +  +     + +LI G CK G  + A E+   L  K    DVV ++I I
Sbjct: 554 EANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFI 613

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             L K G++++   LL +M   G   D  T+NTL+  F
Sbjct: 614 DWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGF 651



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 166/359 (46%), Gaps = 28/359 (7%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            + + Y P N  T+NSL+  FC +  +  A QL+  M   GC PNV + +T+I GL +  
Sbjct: 351 MVEKGYVP-NLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKAT 409

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            ++  + L ++M++          P++  + ++ID +CK   VD   +LF  +++ G   
Sbjct: 410 KVHEGVLLLEQMLSNN------CVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTP 463

Query: 134 NTL--------LCKKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
           N +        LCK  +  +A  LL E+  ++G +P I TY  +++G C   +V+ A  L
Sbjct: 464 NLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKL 523

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
           F  M   G  PD  +YS++I+  CK   ++EA NV   M+ NGF             P  
Sbjct: 524 FLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFD------------PGA 571

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T    IDG CK G++ + +E+   L        V  F+  I    K G    A EL   
Sbjct: 572 ITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLET 631

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +    LV D V YN L+       + +    L   M + GC  D  T+ TL+   + K+
Sbjct: 632 MLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKK 690



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 141/298 (47%), Gaps = 37/298 (12%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN++I   C    +  A +L   +   GC PN+ T ++L+ GL ++   +    L +E
Sbjct: 431 VTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLRE 490

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M    G       P++  Y ++IDGLCK + VD+   LF++M   G+  + +        
Sbjct: 491 MTRKQG-----CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISS 545

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   + EAN +LELM++ G +P   TY  L++G+C  G ++ A+ +   +  KG  PD
Sbjct: 546 LCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPD 605

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V ++S+ I+   K   + +A  +   M+  G             VP+T T N  + G C 
Sbjct: 606 VVTFSIFIDWLSKRGRLRQAGELLETMLRAGL------------VPDTVTYNTLLKGFCD 653

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
                + ++LF  +    CE     + +L+              L +K S K+L+A+V
Sbjct: 654 ASRTEDAVDLFEVMRQCGCEPDNATYTTLV------------GHLVDKKSYKDLLAEV 699



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 138/300 (46%), Gaps = 38/300 (12%)

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD----KGINANTL---LCKK 140
           G+    G++K       S++ GLC           F EM        +  NT+   L K 
Sbjct: 5   GLKAHAGVHK-------SILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKS 57

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            +L +A RLLE M+  G  P +F+Y  +L+G+C   +V  A+ L + M  +G  PDV SY
Sbjct: 58  DRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSY 117

Query: 201 SVLINGYCKNFNVEEAMNVSREMI-----------------------LNGFKKIFNEMKL 237
           + +ING CK   V+EA  V  +MI                       L+G  ++  +M  
Sbjct: 118 TTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTE 177

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-NCELFVEIFNSLIRGCCKFGIFE 296
               P   T N  + GLC    +   ++LF  +E S +C   V  +++++    K G  +
Sbjct: 178 RGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVD 237

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A  L   +  K    +VV Y+ L+H L K G++ +   LL  M  +GC+ ++ T+NT++
Sbjct: 238 DACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTII 297



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 25/233 (10%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M ++GL      +  +L G C  G+ + A+  F  M+ K   PD  +Y+ +ING  K+  
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGLSKSDR 59

Query: 213 VEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTCNI 249
           +++A+ +  EM+ NGF                         +  +M +    P+  +   
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            I+GLCK   V E   +   +    C+  V  + +L+ G C+ G  + A EL  K++ + 
Sbjct: 120 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 179

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENG-CALDVDTFNTLMISFLQ 361
              + + YN ++H L    ++     L   MEE+G C  DV T++T++ S ++
Sbjct: 180 YRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVK 232


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 164/341 (48%), Gaps = 48/341 (14%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG---LRRTGNMNLT 78
           LN ++FN ++ G C  G +  A  +++ M  +G  PNV T +TLI G   + R G M   
Sbjct: 153 LNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKA 212

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138
             + +EMV       GI  PN   Y  LIDG CKD  V     +F EM+           
Sbjct: 213 DAILKEMVAK-----GIC-PNEVTYNILIDGFCKDENVSGAMRVFGEMQ----------- 255

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
                           ++GL P + TY  L+NG C  GKV+ A+AL D M      P+V 
Sbjct: 256 ----------------RQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVV 299

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++VLING+CKN  V EA+N            +FN+M+   V P   T    ID  CK+G
Sbjct: 300 THNVLINGFCKNKTVNEAIN------------LFNDMEKQGVDPNAMTYTTLIDAYCKDG 347

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L+  +        V  +N LI G C+ G  + A  L N++  K L ADVV YN
Sbjct: 348 RMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYN 407

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ILI +L K+G+ +K   LL  M E G      T+NTLM  +
Sbjct: 408 ILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGY 448



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 159/314 (50%), Gaps = 26/314 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VT+N LI GFC + N+  A ++  +M   G RPNV T + LI GL   G ++  + L 
Sbjct: 227 NEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALR 286

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +MV+         +PNV  +  LI+G CK++ V++  +LF +M+ +G++ N +      
Sbjct: 287 DQMVSS------DLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLI 340

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  ++ +A  L  +M+ RG+ P + TY  L+ G C  G V  A +L + M  K   
Sbjct: 341 DAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLS 400

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            DV +Y++LI+  CK     +A+ +  EM    F+K  N        P   T N  +DG 
Sbjct: 401 ADVVTYNILIDSLCKKGESRKAVKLLDEM----FEKGLN--------PSHVTYNTLMDGY 448

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G++   + +   +E    +  V   N LI+G C  G  E A+ L N++  + LV + 
Sbjct: 449 CREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNR 508

Query: 315 VAYNILIHALGKEG 328
             Y I+   + ++G
Sbjct: 509 TTYEIIKEEMMEKG 522



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 135/297 (45%), Gaps = 50/297 (16%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V GA+  FG   R+  RP N VT+N LI G C +G + +A  L  +M +    PNV T +
Sbjct: 244 VSGAMRVFGEMQRQGLRP-NVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHN 302

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNG---------------------MGDFGGIYK----- 97
            LI G  +   +N  + L  +M                        M D   +Y      
Sbjct: 303 VLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDR 362

Query: 98  ---PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEA 146
              P V  Y  LI GLC+   V   + L  EM  K ++A+ +        LCKK +  +A
Sbjct: 363 GIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKA 422

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
            +LL+ M ++GLNP   TY  L++GYC  G +  A+ +   M RKG   +V +++VLI G
Sbjct: 423 VKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKG 482

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           +C    +E+A         NG   + NEM    +VP   T  I  + + + G V ++
Sbjct: 483 FCLKGRLEDA---------NG---LLNEMLERGLVPNRTTYEIIKEEMMEKGFVPDI 527



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 23/210 (10%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G    + +  PLL+G     +      ++  M ++    +V S+++++NG CK       
Sbjct: 115 GFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCK------- 167

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
             V +   LN    +  +MK+  V P   T N  IDG CK G + ++ +    L+    E
Sbjct: 168 --VGK---LNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILK----E 218

Query: 277 LFVE-------IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +  +        +N LI G CK      A  +F ++  + L  +VV YNILI+ L  +G+
Sbjct: 219 MVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGK 278

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + +   L   M  +    +V T N L+  F
Sbjct: 279 VDEAVALRDQMVSSDLEPNVVTHNVLINGF 308


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 183/344 (53%), Gaps = 30/344 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++N +I G C EG +++ S ++ +M   G   +  T +TLI G  + GN +  L +H
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TL 136
            EM+ +G+        P+V  Y SLI  +CK   +++  +   +M+ +G+  N     TL
Sbjct: 334 AEMLRHGL-------TPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTL 386

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +    +K  + EA R+L  M   G +P + TY  L+NG+C+ GK+  AIA+ + M  KG 
Sbjct: 387 VDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGL 446

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PDV SYS +++G+C++++V+EA+ V REM+  G K            P+T T +  I G
Sbjct: 447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIK------------PDTITYSSLIQG 494

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C+     E  +L+  +           + +LI   C  G  E A +L N++  K ++ D
Sbjct: 495 FCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPD 554

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSM-EENGCALDVDTFNTLM 356
           VV Y++LI+ L K+ + ++   LLL +  E     DV T++TL+
Sbjct: 555 VVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDV-TYHTLI 597



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 181/413 (43%), Gaps = 102/413 (24%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           RR Y  L++VT+N+LIKG+C EGN   A  +  +M   G  P+V T  +LI  + + GNM
Sbjct: 303 RRGY-SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNM 361

Query: 76  NLTLKLHQEM---------------VNGMGDFGGI--------------YKPNVFCYGSL 106
           N  ++   +M               V+G    G +              + P+V  Y +L
Sbjct: 362 NRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNAL 421

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGL 158
           I+G C    ++    +  +MK+KG++ + +         C+   + EA R+   M+++G+
Sbjct: 422 INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P   TY+ L+ G+C   +   A  L++ M R G  PD F+Y+ LIN YC   ++E+A+ 
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL------------ 266
           +  EM+  G            V+P+  T ++ I+GL K     E   L            
Sbjct: 542 LHNEMVEKG------------VLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPS 589

Query: 267 ---FPTLEISNCE-LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
              + TL I NC  +  +   SLI+G C  G+   A ++F  +  KN   D  AYNI+IH
Sbjct: 590 DVTYHTL-IENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIH 648

Query: 323 -----------------------------------ALGKEGQIKKENYLLLSM 340
                                              AL KEG++ + N +++ +
Sbjct: 649 GHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHV 701



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 12/217 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + M++  ++P +FTY  L+ G+C  G ++VA+ LFD M  KG +P+V +Y+ LI+
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           GYCK   +++   + R M L G +            P   + N+ I+GLC+ G + EV  
Sbjct: 249 GYCKLRKIDDGFKLLRSMALKGLE------------PNLISYNVVINGLCREGRMKEVSF 296

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +   +      L    +N+LI+G CK G F  A  +  ++    L   V+ Y  LIH++ 
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMC 356

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           K G + +    L  M   G   +  T+ TL+  F QK
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 153/342 (44%), Gaps = 27/342 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG-LRRTGNMNLTLKLHQEM 85
           F+ ++K +     I  A  +V      G  P V + + ++   +R   N++    + +EM
Sbjct: 137 FDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEM 196

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           +           PNVF Y  LI G C    +D    LF +M+ KG     +  NTL+   
Sbjct: 197 LESQ------VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGY 250

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  K+ +  +LL  M  +GL P + +Y  ++NG C  G++     +   M R+G+  D 
Sbjct: 251 CKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE 310

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LI GYCK  N  +A+ +  EM+ +G            + P   T    I  +CK 
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHG------------LTPSVITYTSLIHSMCKA 358

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G++   ME    + +         + +L+ G  + G    A  +  +++       VV Y
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N LI+     G+++    +L  M+E G + DV +++T++  F
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGF 460


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 178/394 (45%), Gaps = 68/394 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN+LI G C+EG + +A+ LV KM   G   +V T  T++ G+ + G+    L L  +
Sbjct: 222 ITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 281

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M           KP+V  Y ++ID LCKD      + LF EM +KGI  N          
Sbjct: 282 MEETH------IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 335

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C   +  +A RLL  M++R +NP + T+  L++     GK+  A  L D M  +   PD
Sbjct: 336 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 395

Query: 197 VFSYSVLINGYCKN--------------------FN-----------VEEAMNVSREMI- 224
             +Y+ +I G+CK+                    FN           V+E M + RE+  
Sbjct: 396 TVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISR 455

Query: 225 ----------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
                                 LN  + +F EM    V P+T TCNI + G C+N  + E
Sbjct: 456 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEE 515

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            +ELF  +++S  +L    +N +I G CK    + A +LF  L    +  DV  YN++I 
Sbjct: 516 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 575

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               +  I   N L   M++NG   D  T+NTL+
Sbjct: 576 GFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLI 609



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 167/358 (46%), Gaps = 25/358 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   + +   P N  T+N +I GFC  G   DA +L++ M      P+V T + LI
Sbjct: 310 AQYLFSEMLEKGIAP-NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 368

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +   + G +    KL  EM++       I+ P+   Y S+I G CK    D  K +F  M
Sbjct: 369 SASVKEGKLFEAEKLCDEMLHRC-----IF-PDTVTYNSMIYGFCKHNRFDDAKHMFDLM 422

Query: 127 KDKGI-NANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
               +   NT++   C+  ++ E  +LL  + +RGL     TY  L++G+C V  +N A 
Sbjct: 423 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 482

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            LF  M   G  PD  + ++L+ G+C+N  +EEA+            ++F  +++  +  
Sbjct: 483 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEAL------------ELFEVIQMSKIDL 530

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +T   NI I G+CK   V E  +LF +L I   E  V+ +N +I G C       A+ LF
Sbjct: 531 DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLF 590

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           +K+       D   YN LI    K G+I K   L+  M  NG     D F   M++ L
Sbjct: 591 HKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNG--FSGDAFTIKMVADL 646



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 167/375 (44%), Gaps = 41/375 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDA----------SQLVKKMATFGCR 56
           +L  FG   +  ++P + VTFN+L+ G C+E  I +A            L  +M   G  
Sbjct: 160 SLSTFGKLTKLGFQP-DVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLT 218

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           P V T +TLI GL   G +     L  +MV      G     +V  YG++++G+CK    
Sbjct: 219 PVVITFNTLINGLCLEGRVLEAAALVNKMV------GKGLHIDVVTYGTIVNGMCKMGDT 272

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
               +L  +M++  I  + +        LCK     +A  L   M+++G+ P +FTY  +
Sbjct: 273 KSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCM 332

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           ++G+C  G+ + A  L   M  +   PDV +++ LI+   K   + EA            
Sbjct: 333 IDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEA------------ 380

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           +K+ +EM    + P+T T N  I G CK+    +   +F  +   +    V  FN++I  
Sbjct: 381 EKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPD----VVTFNTIIDV 436

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C+    +   +L  ++S + LVA+   YN LIH   +   +     L   M  +G   D
Sbjct: 437 YCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPD 496

Query: 349 VDTFNTLMISFLQKE 363
             T N L+  F + E
Sbjct: 497 TITCNILLYGFCENE 511



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 101/198 (51%), Gaps = 2/198 (1%)

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           I+++  L+  +C   K++ +++ F  + + GF PDV +++ L++G C    + EA+ +  
Sbjct: 141 IYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFG 200

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
            M+  G   +F++M    + P   T N  I+GLC  G VLE   L   +      + V  
Sbjct: 201 YMVETG--SLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVT 258

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           + +++ G CK G  + A  L +K+   ++  DVV Y+ +I  L K+G      YL   M 
Sbjct: 259 YGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEML 318

Query: 342 ENGCALDVDTFNTLMISF 359
           E G A +V T+N ++  F
Sbjct: 319 EKGIAPNVFTYNCMIDGF 336



 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            + L+  +EI    L +  FN LI+  C       +   F KL+      DVV +N L+H
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLH 184

Query: 323 ALGKEGQIKKENYLLLSMEENGCALD----------VDTFNTLM 356
            L  E +I +   L   M E G   D          V TFNTL+
Sbjct: 185 GLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLI 228


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 178/394 (45%), Gaps = 68/394 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN+LI G C+EG + +A+ LV KM   G   +V T  T++ G+ + G+    L L  +
Sbjct: 227 ITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 286

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M           KP+V  Y ++ID LCKD      + LF EM +KGI  N          
Sbjct: 287 MEETH------IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C   +  +A RLL  M++R +NP + T+  L++     GK+  A  L D M  +   PD
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 400

Query: 197 VFSYSVLINGYCKN--------------------FN-----------VEEAMNVSREMI- 224
             +Y+ +I G+CK+                    FN           V+E M + RE+  
Sbjct: 401 TVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISR 460

Query: 225 ----------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
                                 LN  + +F EM    V P+T TCNI + G C+N  + E
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEE 520

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            +ELF  +++S  +L    +N +I G CK    + A +LF  L    +  DV  YN++I 
Sbjct: 521 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 580

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               +  I   N L   M++NG   D  T+NTL+
Sbjct: 581 GFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLI 614



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 167/358 (46%), Gaps = 25/358 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   + +   P N  T+N +I GFC  G   DA +L++ M      P+V T + LI
Sbjct: 315 AQYLFSEMLEKGIAP-NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +   + G +    KL  EM++       I+ P+   Y S+I G CK    D  K +F  M
Sbjct: 374 SASVKEGKLFEAEKLCDEMLHRC-----IF-PDTVTYNSMIYGFCKHNRFDDAKHMFDLM 427

Query: 127 KDKGI-NANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
               +   NT++   C+  ++ E  +LL  + +RGL     TY  L++G+C V  +N A 
Sbjct: 428 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 487

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            LF  M   G  PD  + ++L+ G+C+N  +EEA+            ++F  +++  +  
Sbjct: 488 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEAL------------ELFEVIQMSKIDL 535

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +T   NI I G+CK   V E  +LF +L I   E  V+ +N +I G C       A+ LF
Sbjct: 536 DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLF 595

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           +K+       D   YN LI    K G+I K   L+  M  NG     D F   M++ L
Sbjct: 596 HKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNG--FSGDAFTIKMVADL 651



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 152/345 (44%), Gaps = 67/345 (19%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           IRR   PLN  +FN LIK FC      D  +L   ++TFG              L + G 
Sbjct: 134 IRRI--PLNIYSFNILIKCFC------DCHKLSFSLSTFG-------------KLTKLG- 171

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
                                ++P+V  + +L+ GLC +  + +   LF  M + G    
Sbjct: 172 ---------------------FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG---- 206

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
                    +EA  L + M++ GL PV+ T+  L+NG CL G+V  A AL + M  KG  
Sbjct: 207 --------FLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLH 258

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            DV +Y  ++NG CK  + + A+N            + ++M+  ++ P+    +  ID L
Sbjct: 259 IDVVTYGTIVNGMCKMGDTKSALN------------LLSKMEETHIKPDVVIYSAIIDRL 306

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK+GH  +   LF  +        V  +N +I G C FG +  A  L   +  + +  DV
Sbjct: 307 CKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDV 366

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + +N LI A  KEG++ +   L   M       D  T+N+++  F
Sbjct: 367 LTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGF 411



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 38/221 (17%)

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLI-------------------------------- 204
           + +VAI+L+  M  +    +++S+++LI                                
Sbjct: 121 RPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFN 180

Query: 205 ---NGYCKNFNVEEAMNVSREMILNGFKK---IFNEMKLCNVVPETFTCNIFIDGLCKNG 258
              +G C    + EA+ +   M+  GF +   +F++M    + P   T N  I+GLC  G
Sbjct: 181 TLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEG 240

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            VLE   L   +      + V  + +++ G CK G  + A  L +K+   ++  DVV Y+
Sbjct: 241 RVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYS 300

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +I  L K+G      YL   M E G A +V T+N ++  F
Sbjct: 301 AIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGF 341


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 178/394 (45%), Gaps = 68/394 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN+LI G C+EG + +A+ LV KM   G   +V T  T++ G+ + G+    L L  +
Sbjct: 227 ITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 286

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M           KP+V  Y ++ID LCKD      + LF EM +KGI  N          
Sbjct: 287 MEETH------IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C   +  +A RLL  M++R +NP + T+  L++     GK+  A  L D M  +   PD
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 400

Query: 197 VFSYSVLINGYCKN--------------------FN-----------VEEAMNVSREMI- 224
             +Y+ +I G+CK+                    FN           V+E M + RE+  
Sbjct: 401 TVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISR 460

Query: 225 ----------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
                                 LN  + +F EM    V P+T TCNI + G C+N  + E
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEE 520

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            +ELF  +++S  +L    +N +I G CK    + A +LF  L    +  DV  YN++I 
Sbjct: 521 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 580

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               +  I   N L   M++NG   D  T+NTL+
Sbjct: 581 GFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLI 614



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 164/349 (46%), Gaps = 23/349 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   + +   P N  T+N +I GFC  G   DA +L++ M      P+V T + LI
Sbjct: 315 AQYLFSEMLEKGIAP-NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +   + G +    KL  EM++       I+ P+   Y S+I G CK    D  K +F  M
Sbjct: 374 SASVKEGKLFEAEKLCDEMLHRC-----IF-PDTVTYNSMIYGFCKHNRFDDAKHMFDLM 427

Query: 127 KDKGI-NANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
               +   NT++   C+  ++ E  +LL  + +RGL     TY  L++G+C V  +N A 
Sbjct: 428 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 487

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            LF  M   G  PD  + ++L+ G+C+N  +EEA+            ++F  +++  +  
Sbjct: 488 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEAL------------ELFEVIQMSKIDL 535

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +T   NI I G+CK   V E  +LF +L I   E  V+ +N +I G C       A+ LF
Sbjct: 536 DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLF 595

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           +K+       D   YN LI    K G+I K   L+  M  NG + D  T
Sbjct: 596 HKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 644



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 152/345 (44%), Gaps = 67/345 (19%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           IRR   PLN  +FN LIK FC      D  +L   ++TFG              L + G 
Sbjct: 134 IRRI--PLNIYSFNILIKCFC------DCHKLSFSLSTFG-------------KLTKLG- 171

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
                                ++P+V  + +L+ GLC +  + +   LF  M + G    
Sbjct: 172 ---------------------FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG---- 206

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
                    +EA  L + M++ GL PV+ T+  L+NG CL G+V  A AL + M  KG  
Sbjct: 207 --------FLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLH 258

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            DV +Y  ++NG CK  + + A+N            + ++M+  ++ P+    +  ID L
Sbjct: 259 IDVVTYGTIVNGMCKMGDTKSALN------------LLSKMEETHIKPDVVIYSAIIDRL 306

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK+GH  +   LF  +        V  +N +I G C FG +  A  L   +  + +  DV
Sbjct: 307 CKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDV 366

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + +N LI A  KEG++ +   L   M       D  T+N+++  F
Sbjct: 367 LTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGF 411



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 14/210 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N+LI GFC   N+  A  L ++M + G  P+  TC+ L+ G      +   L+L 
Sbjct: 466 NTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELF 525

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + +     D       +   Y  +I G+CK   VD+  DLF  +   G+  +        
Sbjct: 526 EVIQMSKIDL------DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMI 579

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C K+ + +AN L   M   G  P   TY  L+ G    G+++ +I L   M   GF 
Sbjct: 580 SGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFS 639

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
            D F+  +     C+  + E   N  R  I
Sbjct: 640 GDAFTIKMAEEIICRVSDEEIIENYLRPKI 669



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 38/221 (17%)

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLI-------------------------------- 204
           + +VAI+L+  M  +    +++S+++LI                                
Sbjct: 121 RPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFN 180

Query: 205 ---NGYCKNFNVEEAMNVSREMILNGFKK---IFNEMKLCNVVPETFTCNIFIDGLCKNG 258
              +G C    + EA+ +   M+  GF +   +F++M    + P   T N  I+GLC  G
Sbjct: 181 TLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEG 240

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            VLE   L   +      + V  + +++ G CK G  + A  L +K+   ++  DVV Y+
Sbjct: 241 RVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYS 300

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +I  L K+G      YL   M E G A +V T+N ++  F
Sbjct: 301 AIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGF 341



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 8/154 (5%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL-RRTGNMNLTLK 80
           L+ V +N +I G C    + +A  L   +   G  P+V T + +I+G   ++   +  + 
Sbjct: 535 LDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVL 594

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
            H+   NG       ++P+   Y +LI G  K   +D++ +L  EM+  G + +    K 
Sbjct: 595 FHKMKDNG-------HEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKM 647

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
            + +      E +++  L P I   T  +  Y +
Sbjct: 648 AEEIICRVSDEEIIENYLRPKINGETSSIPRYVV 681


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 178/394 (45%), Gaps = 68/394 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN+LI G C+EG + +A+ LV KM   G   +V T  T++ G+ + G+    L L  +
Sbjct: 11  ITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 70

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M           KP+V  Y ++ID LCKD      + LF EM +KGI  N          
Sbjct: 71  MEETH------IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 124

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C   +  +A RLL  M++R +NP + T+  L++     GK+  A  L D M  +   PD
Sbjct: 125 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 184

Query: 197 VFSYSVLINGYCKN--------------------FN-----------VEEAMNVSREMI- 224
             +Y+ +I G+CK+                    FN           V+E M + RE+  
Sbjct: 185 TVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISR 244

Query: 225 ----------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
                                 LN  + +F EM    V P+T TCNI + G C+N  + E
Sbjct: 245 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEE 304

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            +ELF  +++S  +L    +N +I G CK    + A +LF  L    +  DV  YN++I 
Sbjct: 305 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 364

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               +  I   N L   M++NG   D  T+NTL+
Sbjct: 365 GFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLI 398



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 166/354 (46%), Gaps = 25/354 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   + +   P N  T+N +I GFC  G   DA +L++ M      P+V T + LI+   
Sbjct: 103 FSEMLEKGIAP-NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASV 161

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G +    KL  EM++       I+ P+   Y S+I G CK    D  K +F  M    
Sbjct: 162 KEGKLFEAEKLCDEMLHRC-----IF-PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPD 215

Query: 131 I-NANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           +   NT++   C+  ++ E  +LL  + +RGL     TY  L++G+C V  +N A  LF 
Sbjct: 216 VVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQ 275

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M   G  PD  + ++L+ G+C+N  +EEA+            ++F  +++  +  +T  
Sbjct: 276 EMISHGVCPDTITCNILLYGFCENEKLEEAL------------ELFEVIQMSKIDLDTVA 323

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            NI I G+CK   V E  +LF +L I   E  V+ +N +I G C       A+ LF+K+ 
Sbjct: 324 YNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMK 383

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
                 D   YN LI    K G+I K   L+  M  NG     D F   M++ L
Sbjct: 384 DNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNG--FSGDAFTIKMVADL 435



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 12/207 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M++ GL PV+ T+  L+NG CL G+V  A AL + M  KG   DV +Y  ++NG CK  +
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
            + A+N            + ++M+  ++ P+    +  ID LCK+GH  +   LF  +  
Sbjct: 61  TKSALN------------LLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE 108

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 V  +N +I G C FG +  A  L   +  + +  DV+ +N LI A  KEG++ +
Sbjct: 109 KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFE 168

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
              L   M       D  T+N+++  F
Sbjct: 169 AEKLCDEMLHRCIFPDTVTYNSMIYGF 195


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 181/375 (48%), Gaps = 40/375 (10%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  AL   G  ++  + P + VTF SL+ GFC    I DA  +  +M   G  PNV  
Sbjct: 130 SQLSLALSFLGKMMKLGHEP-DIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVI 188

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
            +T+I GL ++  ++  L L   M V+G+       +P+   Y SLI GLC     D   
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEVDGI-------RPDAVTYNSLISGLCNSGRWDDAT 241

Query: 121 DLFMEMKDKGI-------NANTLLC-KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            +   M  + I       NA    C K+ ++ EA  L E M++R L+P I TY+ L+ G 
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGL 301

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI-------- 224
           C+  +++ A  +F  M  KG  PDV +YS+LINGYCK+  VE  M +  EM         
Sbjct: 302 CMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNT 361

Query: 225 ---------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                          LN  ++IF  M  C V P   T N+ + GLC NG + + + +   
Sbjct: 362 VTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILAD 421

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           ++ S  +  +  +N +IRG CK G    A +L+  L+ K L  D+  Y  ++  L K+G 
Sbjct: 422 MQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGL 481

Query: 330 IKKENYLLLSMEENG 344
             + + L   M+E+G
Sbjct: 482 RGEADALFRKMKEDG 496



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 127/267 (47%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRL 149
           P++  +  L+  + K +  D    L+ +M+  GI  N           C+ ++L  A   
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  MM+ G  P I T+  LLNG+C   ++  A+ +FD M   G+ P+V  Y+ +I+G CK
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCK 198

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           +  V+ A++            + N M++  + P+  T N  I GLC +G   +   +   
Sbjct: 199 SKQVDNALD------------LLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSC 246

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +        V  FN+LI  C K G    A EL+ ++  ++L  D+V Y++LI+ L    +
Sbjct: 247 MTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSR 306

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           + +   +   M   GC  DV T++ L+
Sbjct: 307 LDEAEQMFGFMVSKGCFPDVVTYSILI 333



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 14/180 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT++ LI G+C    +    +L  +M+  G   N  T   LI G  R G +N+  ++ + 
Sbjct: 327 VTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKW 386

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV     F G+  PN+  Y  L+ GLC +  +++   +  +M+  G++A+ +        
Sbjct: 387 MV-----FCGV-PPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRG 440

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +CK  ++ +A  L   +  +GL P I+TYT ++ G    G    A ALF  M   G +P+
Sbjct: 441 MCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 118/271 (43%), Gaps = 30/271 (11%)

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           GLC  R        + EM   GI       +  KL ++  L   M+Q    P I  ++ L
Sbjct: 35  GLCFSRRAYSGGSDYREMLRNGI-------RYMKLDDSLDLFFHMVQCRPLPSIADFSRL 87

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM----- 223
           L+    + K +V I L++ M   G   ++ + ++L+N +C+   +  A++   +M     
Sbjct: 88  LSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGH 147

Query: 224 ---------ILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                    +LNGF +         +F+ M      P     N  IDGLCK+  V   ++
Sbjct: 148 EPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALD 207

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L   +E+         +NSLI G C  G ++ A+ + + ++ + +  DV  +N LI A  
Sbjct: 208 LLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACV 267

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           KEG+I +   L   M       D+ T++ L+
Sbjct: 268 KEGRISEAEELYEEMIRRSLDPDIVTYSLLI 298


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 186/368 (50%), Gaps = 39/368 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-LTLKLHQEM 85
           FN +   +  +  I +A  +  KM      PN+ T   LI  L + G ++   LK +Q +
Sbjct: 345 FNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMI 404

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
             GM        P++F + SL+ GLC     ++ ++LF E+ D+GI  +T+        L
Sbjct: 405 DEGM-------TPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNL 457

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C++ +++EA RL++LM++ G+ P + +Y  L++G+CL G+++ A  L D +   G  PD 
Sbjct: 458 CREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDK 517

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNE 234
            +Y+ L++GYCK   +++A ++ REM++ G                        K+++  
Sbjct: 518 VTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLS 577

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M         +T NI I+GLCKN  V E  ++F +L   + +L +   N +I    K G 
Sbjct: 578 MINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGR 637

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A +LF  +S   LV DV  Y ++   L KEG +++ + L  +MEENG A +    N 
Sbjct: 638 KEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNA 697

Query: 355 LMISFLQK 362
           L+   L +
Sbjct: 698 LVRWLLHR 705



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 180/379 (47%), Gaps = 35/379 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITG 68
           AFG  ++  +R  + V F+ L+KG C    + +A+  L+++M  FGC P+V +   L+ G
Sbjct: 114 AFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKG 173

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
                     L+L   M +   D  G + PNV  Y ++IDGLCK ++VD+ K +F  M D
Sbjct: 174 FCNEKRAEEALELLSMMAD---DGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMID 230

Query: 129 KGINAN--TLLC------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           KG+  N  T  C         K  E  ++L+ M   GL P  + Y  LL+  C  G+   
Sbjct: 231 KGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTE 290

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----------- 229
           A  +FDS+ RKG  P+V  Y +L++GY    ++ E  +    M+ NG             
Sbjct: 291 ARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFC 350

Query: 230 ------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        IF++M+   + P   T    ID LCK G V + +  F  +       
Sbjct: 351 AYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTP 410

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            + +F+SL+ G C    +E A ELF ++  + +  D V +N L+  L +EG++ +   L+
Sbjct: 411 DIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLI 470

Query: 338 LSMEENGCALDVDTFNTLM 356
             M   G   DV ++NTL+
Sbjct: 471 DLMLRVGVRPDVISYNTLV 489



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 109/264 (41%), Gaps = 45/264 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N+L+ G+C    I DA  L ++M   G  P+V T +T++ GL +TG  +   +L+
Sbjct: 516 DKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELY 575

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             M+N           N++ Y  +I+GLCK+  VD+   +F             LC K  
Sbjct: 576 LSMINSRTQM------NIYTYNIIINGLCKNNFVDEAFKMFHS-----------LCSKD- 617

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                          L   IFT   ++      G+   A+ LF +++  G +PDV +Y +
Sbjct: 618 ---------------LQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCL 662

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           +            A N+ +E  L    ++F+ M+     P +   N  +  L   G +  
Sbjct: 663 I------------AENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINR 710

Query: 263 VMELFPTLEISNCELFVEIFNSLI 286
                  L+  N  L     + LI
Sbjct: 711 AGAYLSKLDEKNFSLEASTTSMLI 734


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/375 (30%), Positives = 188/375 (50%), Gaps = 40/375 (10%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  AL   G  I+  + P + VTF SL+ GFC    + DA  +  +M   G +PNV  
Sbjct: 130 SQLSLALSFLGKMIKLGHEP-SIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVI 188

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQT 119
            +T+I GL ++  ++  L L   M  +G+G       P+V  Y SLI GLC   R  D T
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIG-------PDVVTYNSLISGLCSSGRWSDAT 241

Query: 120 KDLFMEMKDK------GINANTLLC-KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           + +    K +        NA    C K+ ++ EA    E M++R L+P I TY+ L+ G 
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGL 301

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM--------------N 218
           C+  +++ A  +F  M  KG  PDV +YS+LINGYCK+  VE  M               
Sbjct: 302 CMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNT 361

Query: 219 VSREMILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           V+  +++ G+         ++IF  M  C V P   T N+ + GLC NG + + + +   
Sbjct: 362 VTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILAD 421

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           ++ +  +  +  +N +IRG CK G    A +++  L+C+ L+ D+  Y  ++  L K+G 
Sbjct: 422 MQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGL 481

Query: 330 IKKENYLLLSMEENG 344
            ++ + L   M+E+G
Sbjct: 482 RREADALFRKMKEDG 496



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 125/267 (46%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRL 149
           P++  +  L+  + K +  D    L+ +M+  GI  N           C+ ++L  A   
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  M++ G  P I T+  LLNG+C   +V  A+ +FD M   G+ P+V  Y+ +I+G CK
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           +  V+ A++            + N M+   + P+  T N  I GLC +G   +   +   
Sbjct: 199 SKQVDNALD------------LLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSC 246

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +        V  FN+LI  C K G    A E + ++  ++L  D+V Y++LI+ L    +
Sbjct: 247 MTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSR 306

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           + +   +   M   GC  DV T++ L+
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILI 333



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 14/180 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT++ LI G+C    +    +L  +M+  G   N  T   LI G  R G +N+  ++ + 
Sbjct: 327 VTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRR 386

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV     F G++ PN+  Y  L+ GLC +  +++   +  +M+  G++A+ +        
Sbjct: 387 MV-----FCGVH-PNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRG 440

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +CK  ++ +A  +   +  +GL P I+TYT ++ G    G    A ALF  M   G +P+
Sbjct: 441 MCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 30/271 (11%)

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           G C  R        + EM   GI       +  KL ++  L   M+Q    P I  ++ L
Sbjct: 35  GFCFSRRAYSNGSDYREMLRNGI-------RFMKLDDSLDLFFHMVQCRPLPSIADFSRL 87

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI---- 224
           L+    + K +V I L++ M   G   ++ + ++L+N +C+   +  A++   +MI    
Sbjct: 88  LSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGH 147

Query: 225 ----------LNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                     LNGF +         +F++M      P     N  IDGLCK+  V   ++
Sbjct: 148 EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALD 207

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L   +E       V  +NSLI G C  G +  A+ + + ++ + +  DV  +N LI A  
Sbjct: 208 LLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACV 267

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           KEG++ +       M       D+ T++ L+
Sbjct: 268 KEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI 298


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 190/417 (45%), Gaps = 83/417 (19%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N VTF +L+ G C EG + +A  L+ +M   G +PN  T  T++ G+ + G+    L
Sbjct: 175 RP-NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSAL 233

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            L ++M     +     KPNV  Y ++IDGL KD       +L+ EM++KGI  +     
Sbjct: 234 NLLRKM-----EEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYN 288

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN--------------------- 170
                 C   +  EA RLL+ M++R +NP + TY+ L+N                     
Sbjct: 289 CMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPR 348

Query: 171 --------------GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
                         G+C   +++ A  +F  MA KG  PDVF+++ LI+GYC    +++ 
Sbjct: 349 GIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDG 408

Query: 217 MNVSREMI-----------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             +  EM                        LN    +  +M    V P+  TCN  +DG
Sbjct: 409 TELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG 468

Query: 254 LCKNGHVLEVMELFPTLEISNCEL-----------FVEIFNSLIRGCCKFGIFEIASELF 302
           LC NG + + +E+F  ++ S  +L            V+ +N LI G    G F  A EL+
Sbjct: 469 LCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELY 528

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            ++  + +V + + Y+ +I+ L K+ ++ +   +  SM     + DV TFNTL+  +
Sbjct: 529 KEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGY 585



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 172/380 (45%), Gaps = 48/380 (12%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N +I GFC  G   +A +L+++M      PNV T   LI    +        +L+ EM
Sbjct: 286 TYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEM 345

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
           +       GI  PN   Y S+IDG CK   +D  + +F  M  KG +      NTL+   
Sbjct: 346 LPR-----GII-PNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGY 399

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   ++ +   LL  M + GL     TY  L++G+CLVG +N A+ L   M   G  PD+
Sbjct: 400 CGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDI 459

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM-------------------------ILNGF---- 228
            + + L++G C N  +++A+ + + M                         +++G     
Sbjct: 460 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEG 519

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                ++++ EM    +VP T T +  I+GLCK   + E  ++F ++   +    V  FN
Sbjct: 520 KFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFN 579

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +L+ G CK G  +   ELF ++  + +VAD + Y  LIH   K G I     +   M  +
Sbjct: 580 TLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISS 639

Query: 344 GCALDVDTFNTLMISFLQKE 363
           G   D  T  +++     KE
Sbjct: 640 GVYPDTITIRSMLTVLWSKE 659



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 138/265 (52%), Gaps = 27/265 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+N+LI GFC+ G++  A  L ++M + G  P++ TC+TL+ GL   G +   L++ 
Sbjct: 423 DTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 482

Query: 83  QEMVNGMGD------FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           + M     D      F G+ +P+V  Y  LI GL  +    + ++L+ EM  +GI  NT+
Sbjct: 483 KAMQKSKMDLDASRPFNGV-EPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTI 541

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LCK+++L EA ++ + M  +  +P + T+  L++GYC  G+V+  + LF  M
Sbjct: 542 TYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEM 601

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            R+G + D  +Y  LI+G+ K  N+  A+++ +EMI +G            V P+T T  
Sbjct: 602 GRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSG------------VYPDTITIR 649

Query: 249 IFIDGLCKNGHVLEVMELFPTLEIS 273
             +  L     +   + +   L++S
Sbjct: 650 SMLTVLWSKEELKRAVAMLEDLQMS 674



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 161/364 (44%), Gaps = 46/364 (12%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN-- 87
           L  GF     + DA  L   M      P+V   + L+  + R    +L + L+Q+M    
Sbjct: 48  LRSGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQ 107

Query: 88  -----------------------GMGDFGGI----YKPNVFCYGSLIDGLCKDRLVDQTK 120
                                   +  FG I    ++P+V  + +L+ GLC +  V +  
Sbjct: 108 IPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEAL 167

Query: 121 DLFMEM-KDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           DLF +M +   +   TL   LC++ ++VEA  LL+ M++ GL P   TY  +++G C +G
Sbjct: 168 DLFHQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIG 227

Query: 177 KVNVAIALFDSMARKGFM-PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
               A+ L   M     + P+V  YS +I+G  K+    +A N            ++ EM
Sbjct: 228 DTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHN------------LYTEM 275

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           +   + P+ FT N  IDG C +G   E   L   +        V  +++LI    K   F
Sbjct: 276 QEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKF 335

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
             A EL++++  + ++ + + YN +I    K+ ++    ++   M   GC+ DV TFNTL
Sbjct: 336 FEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTL 395

Query: 356 MISF 359
           +  +
Sbjct: 396 IDGY 399



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 11/129 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  A   F S   + + P + VTFN+L+ G+C  G + D  +L  +M   G   +  T
Sbjct: 554 SRLDEATQMFDSMGSKSFSP-DVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAIT 612

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK----DRLVD 117
             TLI G R+ GN+N  L + QEM++      G+Y P+     S++  L       R V 
Sbjct: 613 YITLIHGFRKVGNINGALDIFQEMIS-----SGVY-PDTITIRSMLTVLWSKEELKRAVA 666

Query: 118 QTKDLFMEM 126
             +DL M M
Sbjct: 667 MLEDLQMSM 675


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 179/346 (51%), Gaps = 34/346 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +TFN +I G C +G +++ S+++ +M+  G  P+  T +TL+ G  + GN +  L LH
Sbjct: 52  NLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLH 111

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EMV NG+        PNV  Y SLI+ +CK   +++  + F +M  +G+  N       
Sbjct: 112 AEMVRNGL-------SPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTI 164

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                ++  L EA R+L  M + G  P I TY  L+NG+C++G++  AI L   M  KG 
Sbjct: 165 INGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGV 224

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PDV SYS +I+G+ +N  ++ A  +  EMI              +V+P+  T +  I G
Sbjct: 225 LPDVVSYSTIISGFARNQELDRAFQMKVEMIGK------------SVLPDAVTYSSLIQG 272

Query: 254 LCKNGHVLEVMELFP---TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           LC+   + E  ++F    T+++   E     + +LI   CK G    A  L +++  K  
Sbjct: 273 LCEQRRLTEACDMFQEMLTIKLPPDEF---TYTTLINAYCKEGDLNKALHLHDEMIQKGF 329

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + D V YN+LI+ L K+ + K+   LLL +  +       T+NTL+
Sbjct: 330 LPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLI 375



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 176/364 (48%), Gaps = 42/364 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ T+ ++I GF  +G + +A +++ +M   G  P++ T + LI G    G M   + L 
Sbjct: 157 NERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLL 216

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           Q+MV      G    P+V  Y ++I G  +++ +D+   + +EM  K +  + +      
Sbjct: 217 QDMV------GKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLI 270

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ +L EA  + + M+   L P  FTYT L+N YC  G +N A+ L D M +KGF+
Sbjct: 271 QGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFL 330

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT-------- 246
           PD  +Y+VLING  K    +EA    R ++L    K+F +    + +P   T        
Sbjct: 331 PDAVTYNVLINGLNKQARSKEA----RRLLL----KLFYD----DSIPSAVTYNTLIENC 378

Query: 247 CNI-------FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           CNI        + G C  G + E  ++F ++   N +    I+N +I G C+ G    A 
Sbjct: 379 CNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAY 438

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +L+ ++   + V   V    L+ AL  EG   + N ++  +  + C L     + +++  
Sbjct: 439 KLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDILRS-CKLTDAELSKVLVEI 497

Query: 360 LQKE 363
            QKE
Sbjct: 498 NQKE 501



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 122/267 (45%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           PNV  Y ++IDG CK +  D+       M  KG+  N +        LC+  +L E + +
Sbjct: 16  PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  M ++G  P   TY  L+NGYC  G  + A+ L   M R G  P+V +Y+ LIN  CK
Sbjct: 76  LVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 135

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
             N+  AM            + F++M +  + P   T    I+G  + G + E   +   
Sbjct: 136 AGNLNRAM------------EFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNE 183

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +  S     +  +N+LI G C  G  E A  L   +  K ++ DVV+Y+ +I    +  +
Sbjct: 184 MTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQE 243

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           + +   + + M       D  T+++L+
Sbjct: 244 LDRAFQMKVEMIGKSVLPDAVTYSSLI 270



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 87/336 (25%)

Query: 10  AFGSFIRRCYRPLND----------VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV 59
           A    +   YR LN+          VT+N+LI G C+ G + +A  L++ M   G  P+V
Sbjct: 169 AQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDV 228

Query: 60  TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
            +  T+I+G  R   ++   ++  EM+      G    P+   Y SLI GLC+ R + + 
Sbjct: 229 VSYSTIISGFARNQELDRAFQMKVEMI------GKSVLPDAVTYSSLIQGLCEQRRLTEA 282

Query: 120 KDLFMEM-----KDKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
            D+F EM             TL+   CK+  L +A  L + M+Q+G  P   TY  L+NG
Sbjct: 283 CDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLING 342

Query: 172 --------------------------------------------------YCLVGKVNVA 181
                                                             +C+ G ++ A
Sbjct: 343 LNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEA 402

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             +F+SM  K   P+   Y+V+I+G+C+  NV +A             K++ EM   + V
Sbjct: 403 DQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAY------------KLYKEMVHVDFV 450

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           P T T    +  L   G   E+ E+   + + +C+L
Sbjct: 451 PHTVTVLALVKALFTEGMDGELNEVIGDI-LRSCKL 485



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 12/209 (5%)

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           R  + M + G  P + TY  +++GYC + + + A     SM  KG  P++ +++++ING 
Sbjct: 4   RFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGL 63

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C++  ++E   V  EM   G+            VP+  T N  ++G CK G+  + + L 
Sbjct: 64  CRDGRLKETSEVLVEMSRKGY------------VPDEVTYNTLVNGYCKEGNFHQALVLH 111

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +  +     V  + SLI   CK G    A E F+++  + L  +   Y  +I+   ++
Sbjct: 112 AEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQ 171

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
           G + +   +L  M  +G    + T+N L+
Sbjct: 172 GLLDEAYRVLNEMTRSGFIPSIVTYNALI 200



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 12/183 (6%)

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
           + +  F  M R G +P+V +Y+ +I+GYCK    +EA    R M L G +          
Sbjct: 1   MGLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLE---------- 50

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
             P   T N+ I+GLC++G + E  E+   +           +N+L+ G CK G F  A 
Sbjct: 51  --PNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQAL 108

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            L  ++    L  +VV Y  LI+++ K G + +       M   G   +  T+ T++  F
Sbjct: 109 VLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGF 168

Query: 360 LQK 362
            Q+
Sbjct: 169 AQQ 171


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 180/361 (49%), Gaps = 26/361 (7%)

Query: 9   MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
            AF   I  C  P +   FN L+   C E  I +A  L  ++   G RP V + +TLI G
Sbjct: 210 WAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLING 269

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
             ++GN++   +L + M+           P+VF Y  LI+GLCK+  +D    LF+EM D
Sbjct: 270 YCKSGNLDQGFRLKRFMMENR------VFPDVFTYSVLINGLCKEGQLDDANKLFLEMCD 323

Query: 129 KGINAN-----TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +G+  N     TL+   C   +      + + M+++G+ P + TY  L+NG C VG +  
Sbjct: 324 RGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLRE 383

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A  L   M ++G  PD F+Y++LI+G CK  ++E A+ + +EM+  G       ++L NV
Sbjct: 384 AKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEG-------IELDNV 436

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
               FT    I G C+ G V+E       +  +  +     +  +I G CK G  +   +
Sbjct: 437 A---FTA--LISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFK 491

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           L  ++ C   V  VV YN+L++ L K+GQ+K  N LL +M   G   D  T+N L+   L
Sbjct: 492 LLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTL 551

Query: 361 Q 361
           Q
Sbjct: 552 Q 552



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 133/292 (45%), Gaps = 35/292 (11%)

Query: 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQ 155
           G L D L K  L       + E+ D G   +          LCK+ K+ EA  L   + +
Sbjct: 194 GYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGK 253

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           RGL P + ++  L+NGYC  G ++    L   M      PDVF+YSVLING CK   +++
Sbjct: 254 RGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDD 313

Query: 216 AMNVSREM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFID 252
           A  +  EM              ++NG           +I+ +M    V P+  T N  I+
Sbjct: 314 ANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLIN 373

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNS--LIRGCCKFGIFEIASELFNKLSCKNL 310
           GLCK G + E  +L   +E++   L  + F    LI GCCK G  E A E+  ++  + +
Sbjct: 374 GLCKVGDLREAKKL--VIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGI 431

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             D VA+  LI    +EGQ+ +    L  M E G   D  T+  ++  F +K
Sbjct: 432 ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKK 483


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 171/356 (48%), Gaps = 28/356 (7%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +RR    +N+VT+N +I G C  G + +A    ++M  +G  P+  T   L+ GL +   
Sbjct: 269 MRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSR 328

Query: 75  MNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
           +     L  EM  +G+       KPN+  YG+L+DG  K+    +  D+  EM   G+  
Sbjct: 329 LKEAKALLDEMSCSGL-------KPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQP 381

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           N +        LCK  +L  A++LL+ M++ GL P  FTY PL+ G+      + A  L 
Sbjct: 382 NKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELL 441

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           + M   G +P+V+SY ++ING C+N   +EA N+  EMI  G K            P  F
Sbjct: 442 NEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLK------------PNAF 489

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
                I G  K G++    E    +  +N    +  +NSLI+G    G  E A E + ++
Sbjct: 490 MYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQV 549

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             + LV D   Y+ LIH   K G ++K + LL  M  +G   + DT+  L+  + +
Sbjct: 550 QKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFK 605



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 171/350 (48%), Gaps = 30/350 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++ T++ LI G+C  GN+  A QL+++M   G +PN  T   L+ G  ++ +      + 
Sbjct: 557 DEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSIL 616

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
           Q M+ G GD     KP+   YG +I  L +   ++    +  E++  G+  +        
Sbjct: 617 QSML-GSGD-----KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLI 670

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           + LCK   + +A  LL+ M + GL P I  Y  L++G+C  G ++ A  +FDS+  KG +
Sbjct: 671 SGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLV 730

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+ LI+G CKN ++ +A ++ +EM+  G            + P+ F  N+   G 
Sbjct: 731 PNCVTYTALIDGNCKNGDITDAFDLYKEMLDRG------------IAPDAFVYNVLATG- 777

Query: 255 CKNGHVLEVMELFPTLEISNCELF-VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           C +   LE   LF T E+ N     V +FN+L+ G CK G  +   +L + +  + +V +
Sbjct: 778 CSDAADLE-QALFLTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPN 836

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV-DTFNTLMISFLQK 362
                 ++   GK G++ + + +   +++   +    D F+ L    + K
Sbjct: 837 AQTVEKVVSEFGKAGKLGEAHRVFAELQQKKASQSATDRFSLLFTDMINK 886



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 159/343 (46%), Gaps = 28/343 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +L+ GF  EG   +A  ++K+M + G +PN    D LI GL + G +    KL 
Sbjct: 347 NIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLL 406

Query: 83  QEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           +EM+  G+       +P+ F Y  L+ G  +    D   +L  EM++ GI  N       
Sbjct: 407 KEMIKVGL-------RPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIM 459

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC+  +  EA  LLE M+  GL P  F Y PL+ G+   G +++A    + M +   
Sbjct: 460 INGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANV 519

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+F Y+ LI G      +EEA            ++ + +++   +VP+ FT +  I G
Sbjct: 520 HPDLFCYNSLIKGLSTVGRMEEA------------EEYYAQVQKRGLVPDEFTYSGLIHG 567

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK G++ +  +L   +  S  +   + +  L+ G  K   +E  S +   +       D
Sbjct: 568 YCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPD 627

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              Y I+I  L +   ++    +L  +E+NG   D+  +++L+
Sbjct: 628 NHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLI 670



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 169/399 (42%), Gaps = 72/399 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + +++LI+G C  G +  AS+L+K+M   G RP+  T + L+ G  +  + +   +L 
Sbjct: 382 NKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELL 441

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
            EM N      GI  PNV+ YG +I+GLC++    +  +L  EM  +G+  N        
Sbjct: 442 NEMRNS-----GIL-PNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLI 495

Query: 135 ---------TLLCKK--------------------------TKLVEANRLLELMMQRGLN 159
                    +L C+                            ++ EA      + +RGL 
Sbjct: 496 IGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLV 555

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P  FTY+ L++GYC  G +  A  L   M   G  P+  +Y+ L+ GY K+ + E+  ++
Sbjct: 556 PDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSI 615

Query: 220 SREMILNGFKK-----------------------IFNEMKLCNVVPETFTCNIFIDGLCK 256
            + M+ +G K                        +  E++   +VP+    +  I GLCK
Sbjct: 616 LQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCK 675

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + + + L   +     E  +  +N+LI G C+ G    A  +F+ +  K LV + V 
Sbjct: 676 IADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVT 735

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           Y  LI    K G I     L   M + G A D   +N L
Sbjct: 736 YTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVL 774



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 135/332 (40%), Gaps = 45/332 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
              + L+  +   G++R+A+Q+V  MA  G  P    C+ L+  L R   M L  KL   
Sbjct: 174 AVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKL--- 230

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
              G  +  GI  P+V+ Y + I+  CK R  D  K +F EM+ +    N +        
Sbjct: 231 --KGFMEGAGIL-PDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEV-------- 279

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                              TY  +++G C  G V  A    + M   G  PD F+Y  L+
Sbjct: 280 -------------------TYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALM 320

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           NG CK   ++EA            K + +EM    + P        +DG  K G   E  
Sbjct: 321 NGLCKGSRLKEA------------KALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAF 368

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           ++   +  +  +    ++++LIRG CK G    AS+L  ++    L  D   YN L+   
Sbjct: 369 DILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGH 428

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++        LL  M  +G   +V ++  ++
Sbjct: 429 FQQHDKDGAFELLNEMRNSGILPNVYSYGIMI 460



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 128/307 (41%), Gaps = 45/307 (14%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           P+    D L+   ++TG    +++   ++V  M D G    P   C     +GL KD L 
Sbjct: 171 PSTAVLDVLVDTYKKTG----SVRNAAQVVLMMADLG--LAPTRRC----CNGLLKDLLR 220

Query: 117 DQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
               +L  ++K                         M   G+ P ++TY+  +  +C   
Sbjct: 221 ADAMELLWKLKG-----------------------FMEGAGILPDVYTYSTFIEAHCKAR 257

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
             + A  +F+ M R+    +  +Y+V+I+G C++  VEEA     EM+  G         
Sbjct: 258 DFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLS------- 310

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
                P+ FT    ++GLCK   + E   L   +  S  +  + ++ +L+ G  K G   
Sbjct: 311 -----PDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTA 365

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A ++  ++    +  + + Y+ LI  L K GQ+ + + LL  M + G   D  T+N LM
Sbjct: 366 EAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLM 425

Query: 357 ISFLQKE 363
               Q+ 
Sbjct: 426 QGHFQQH 432


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 173/362 (47%), Gaps = 28/362 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V  AL+ +    R C   +  +T+  L+   C    I DAS +++ M   GC PNV T 
Sbjct: 83  RVDSALVHYRDMQRHCAPSV--ITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTY 140

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI G  + GNM+  + L  +M+           P+VF Y  LIDG CK         L
Sbjct: 141 NTLINGFCKLGNMDEAVVLFNQMLENSC------SPDVFTYNILIDGYCKQERPQDGAKL 194

Query: 123 FMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM   G     I  NTL   L K  K ++A  L ++M++R   P  FT+  +++ +C 
Sbjct: 195 LQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCK 254

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           VG++++A  LF  M  +G +PD+++Y+++I+G C+   +++A            +++   
Sbjct: 255 VGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDA------------RQLLER 302

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M      P+  T N  + GLCK   V E  E++  L      L V   ++LI G CK   
Sbjct: 303 MTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRR 362

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A +L  ++       DVVAY ILIH   K  Q+ K       M + GC   V T++ 
Sbjct: 363 LDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSI 422

Query: 355 LM 356
           ++
Sbjct: 423 VI 424



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 159/334 (47%), Gaps = 46/334 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + +T+++LI GFC   + + A +L+ +M   G  P+    +T+I GL   G ++  L  +
Sbjct: 32  DSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHY 91

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
           ++M            P+V  Y  L+D LCK                             +
Sbjct: 92  RDMQRHCA-------PSVITYTILVDALCK---------------------------SAR 117

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           + +A+ +LE M++ G  P + TY  L+NG+C +G ++ A+ LF+ M      PDVF+Y++
Sbjct: 118 ISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNI 177

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI+GYCK    ++   + +EM+  G +            P   T N  +D L K+G  ++
Sbjct: 178 LIDGYCKQERPQDGAKLLQEMVKYGCE------------PNFITYNTLMDSLVKSGKYID 225

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
              L   +   +C+     FN +I   CK G  ++A ELF  ++ +  + D+  YNI+I 
Sbjct: 226 AFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMIS 285

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +  +I     LL  M E GC  DV T+N+++
Sbjct: 286 GACRANRIDDARQLLERMTEAGCPPDVVTYNSIV 319



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 15/235 (6%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + K + A       +RR  +P +  TFN +I  FC  G +  A +L + M   GC P++ 
Sbjct: 220 SGKYIDAFNLAQMMLRRDCKP-SHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIY 278

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T + +I+G  R   ++   +L + M            P+V  Y S++ GLCK   VD+  
Sbjct: 279 TYNIMISGACRANRIDDARQLLERMTEAGC------PPDVVTYNSIVSGLCKASQVDEAY 332

Query: 121 DLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +++  +++ G     +  +TL   LCK  +L +A +LL  M + G  P +  YT L++G+
Sbjct: 333 EVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGF 392

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           C   +++ ++A F  M  KG +P V +YS++I+  CK+  V +   + + M+  G
Sbjct: 393 CKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG 447



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 13/223 (5%)

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +K K  EA  L +  +    +P   TY+ L+NG+C       A  L D M ++G +P   
Sbjct: 10  RKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNA 69

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            Y+ +I G C N  V+ A+   R+M            + C   P   T  I +D LCK+ 
Sbjct: 70  VYNTIIKGLCDNGRVDSALVHYRDM-----------QRHC--APSVITYTILVDALCKSA 116

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   +   +  + C   V  +N+LI G CK G  + A  LFN++   +   DV  YN
Sbjct: 117 RISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYN 176

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           ILI    K+ + +    LL  M + GC  +  T+NTLM S ++
Sbjct: 177 ILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVK 219



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 16/147 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+NS++ G C    + +A ++ + +   G   +V TC TLI GL ++  ++   K
Sbjct: 309 PPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEK 368

Query: 81  LHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           L +EM  NG         P+V  Y  LI G CK   +D++   F EM DKG     +   
Sbjct: 369 LLREMERNGSA-------PDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYS 421

Query: 137 -----LCKKTKLVEANRLLELMMQRGL 158
                LCK  ++ +   LL+ M++RG+
Sbjct: 422 IVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 34/147 (23%)

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
           CN  +    +     E  +LF       C      +++LI G CK   F+ A  L +++ 
Sbjct: 1   CNCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEME 60

Query: 307 CKNLV----------------------------------ADVVAYNILIHALGKEGQIKK 332
            + +V                                    V+ Y IL+ AL K  +I  
Sbjct: 61  KRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISD 120

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
            + +L  M E GCA +V T+NTL+  F
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGF 147


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 185/376 (49%), Gaps = 43/376 (11%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P N +TF +LIKG C+ G   +A      +   G + +  +   L+ GL + G     
Sbjct: 76  YEP-NSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAA 134

Query: 79  LK-LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
           ++ L +  VN           +V  Y ++ID LCK + V     L+ EM  KGI  N   
Sbjct: 135 MQMLRKTWVNA----------DVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYT 184

Query: 137 -------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                  LCK  K  +A  LL +MM++G+ P + TY  +++GYCLV +VN A+ +F+ M 
Sbjct: 185 FSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMV 244

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK----- 230
           ++G  P+V+ Y+++ING CK   V+EAMN+ +EM              +++G  K     
Sbjct: 245 QEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKIS 304

Query: 231 ----IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
               + +EM+      +  T N  +  LCKN H+ + + L   ++    +  V  + +LI
Sbjct: 305 TSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLI 364

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G CK G  E A  +F ++  +     V  YN++I+ L K+G   +   LL  ME+N C 
Sbjct: 365 DGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACI 424

Query: 347 LDVDTFNTLMISFLQK 362
            D  ++ T++ +  +K
Sbjct: 425 PDAVSYETIIYALSEK 440



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 15/237 (6%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++V  AL  F   ++    P N   +N +I G C +  + +A  L K+M      P+V T
Sbjct: 231 NQVNKALNIFNVMVQEGVEP-NVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVT 289

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            + LI GL + G ++ +L    E+V+ M   G     ++  Y SL+  LCK+  +DQ   
Sbjct: 290 YNILIDGLCKLGKISTSL----ELVDEMRSIGKTV--DIITYNSLLHALCKNHHLDQAIT 343

Query: 122 LFMEMKDKGINAN-----TL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  E+KD+GI  N     TL   LCK  +L +A  + + ++  G +  ++TY  ++NG C
Sbjct: 344 LVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLC 403

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
             G  + A+AL   M     +PD  SY  +I    +     +   +   MI+ G  K
Sbjct: 404 KKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGLSK 460



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 128/322 (39%), Gaps = 63/322 (19%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLL----CKKTKLVEANRL 149
           P +  +  ++  L K         LF +++  GI  +    T+L    C    +     +
Sbjct: 8   PPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSI 67

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +++ G  P   T+T L+ G CL G+   A+   D +   GF  D  SY++L+NG CK
Sbjct: 68  LTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCK 127

Query: 210 NFNVEEAMNVSREMILNG--------------------FKKIFNEMKLCNVVPETFTCNI 249
                 AM + R+  +N                       ++++EM    + P  +T +I
Sbjct: 128 MGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSI 187

Query: 250 FIDGLCKN-----------------------------------GHVLEVMELFPTLEISN 274
            +D LCK+                                     V + + +F  +    
Sbjct: 188 LVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEG 247

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            E  V  +N +I G CK    + A  LF ++  K +  DVV YNILI  L K G+I    
Sbjct: 248 VEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSL 307

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L+  M   G  +D+ T+N+L+
Sbjct: 308 ELVDEMRSIGKTVDIITYNSLL 329



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 17/205 (8%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+Q    P I  +  +L     +     AI+LF  +   G  P + + ++L+N YC    
Sbjct: 1   MLQISPTPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGG 60

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           +    ++  +++  G++            P + T    I G+C NG   E +     +  
Sbjct: 61  ITFLFSILTKILKMGYE------------PNSITFTTLIKGMCLNGQAYEALLFHDHVVA 108

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              +L    +  L+ G CK G    A ++  K       ADVV Y+ +I +L K G+   
Sbjct: 109 HGFKLDQVSYAILMNGLCKMGETRAAMQMLRKTWVN---ADVVMYSTIIDSLCK-GKFVT 164

Query: 333 ENYLLLS-MEENGCALDVDTFNTLM 356
           + Y L S M   G   +V TF+ L+
Sbjct: 165 DAYRLYSEMIAKGIFPNVYTFSILV 189


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 169/343 (49%), Gaps = 27/343 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI  F     + +A +L+++M   GC PN+ T + L+  L +   +     + 
Sbjct: 56  NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVV 115

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M+ G       + PNV  + SL+DG CK   VD  + L   M  KG+  N +      
Sbjct: 116 KKMIEGG------FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALI 169

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  K +EA  +LE M   G+ P  FTY+ L++G C   K+  A  +   MA  G  
Sbjct: 170 DGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCT 229

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV  YS +I+ +CK+  + EA            +K   EM+     P+  T N  IDGL
Sbjct: 230 PDVVVYSSIIHAFCKSGKLLEA------------QKTLQEMRKQRKSPDVVTYNTVIDGL 277

Query: 255 CKNGHVLEVMELFPTLEISNCELF-VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           CK G + E   +   ++ S   L  V  ++++I G CK  +   A +L +++       D
Sbjct: 278 CKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPD 337

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           VV Y  +I  L K G++++  YLL  M+  GCA +V T+ TL+
Sbjct: 338 VVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLI 380



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 174/352 (49%), Gaps = 29/352 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +TFNSL+ GFC  GN+ DA +L+  M   G RPNV T   LI GL ++       ++ 
Sbjct: 126 NVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVL 185

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
           +EM        G+  P+ F Y +LI GLCK   +++ + +   M   G   + ++     
Sbjct: 186 EEM-----KASGV-TPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 239

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-F 193
              CK  KL+EA + L+ M ++  +P + TY  +++G C +GK+  A  + D M   G  
Sbjct: 240 HAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDV 299

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PDV +YS +ING CK+  + EA  +   M   G          CN  P+  T    IDG
Sbjct: 300 LPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAG----------CN--PDVVTYTTIIDG 347

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G + E   L   ++ + C   V  + +LI G CK    + A  +  ++       +
Sbjct: 348 LCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 407

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEEN--GCALDVDTFNTLMISFLQKE 363
           +V YN +++ L   G+IK+   L+  M++    C+ D  T+ T++ + +  +
Sbjct: 408 LVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSD 459



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 168/345 (48%), Gaps = 27/345 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+N L+   C    +  A  +VKKM   G  PNV T ++L+ G  + GN++   K
Sbjct: 89  PPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARK 148

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           L   MV  GM       +PNV  Y +LIDGLCK +   + K++  EMK  G+  +     
Sbjct: 149 LLGIMVAKGM-------RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYS 201

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  K+ EA ++L  M   G  P +  Y+ +++ +C  GK+  A      M ++
Sbjct: 202 ALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQ 261

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
              PDV +Y+ +I+G CK   + EA  +  +M  +G           +V+P+  T +  I
Sbjct: 262 RKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESG-----------DVLPDVVTYSTVI 310

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +GLCK+  ++E  +L   +  + C   V  + ++I G CK G  E A  L   +      
Sbjct: 311 NGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCA 370

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +VV Y  LI  L K  ++ +   ++  M   GC  ++ T+NT++
Sbjct: 371 PNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMV 415



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 143/291 (49%), Gaps = 29/291 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+++LI G C    I +A Q++++MA  GC P+V    ++I    ++G +    K  QEM
Sbjct: 199 TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM 258

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTL--- 136
                       P+V  Y ++IDGLCK   + + + +  +M++ G      +  +T+   
Sbjct: 259 RKQR------KSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVING 312

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   LVEA +LL+ M + G NP + TYT +++G C  G++  A  L   M R G  P+
Sbjct: 313 LCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPN 372

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ LI+G CK   V+EA            +++  EM+     P   T N  ++GLC 
Sbjct: 373 VVTYTTLISGLCKARKVDEA------------ERVMEEMRNAGCPPNLVTYNTMVNGLCV 420

Query: 257 NGHVLEVMELFPTLE--ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           +G + E  +L   ++   + C      + +++       + + A +L  ++
Sbjct: 421 SGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 17/244 (6%)

Query: 121 DLFMEMKDKGINANTLLCKK--TKLVEANRL---LELMMQRGLNPVIFTYTPLLNGYCLV 175
           +L  EMK  G   +        T +  A  L   ++ +   G +P + TYT L+  +   
Sbjct: 11  ELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARA 70

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
            K+  A+ L + M  +G  P++ +Y+VL++  CK   V  A +V ++MI  GF       
Sbjct: 71  KKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGF------- 123

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                 P   T N  +DG CK G+V +  +L   +        V  +++LI G CK   F
Sbjct: 124 -----APNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKF 178

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
             A E+  ++    +  D   Y+ LIH L K  +I++   +L  M  +GC  DV  ++++
Sbjct: 179 LEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSI 238

Query: 356 MISF 359
           + +F
Sbjct: 239 IHAF 242



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
           L+   ++  EMK     P+ FT    I  +   G +   M+   ++    C+  V  + +
Sbjct: 6   LHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTA 62

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI    +    E A +L  ++  +    ++V YN+L+ AL K   +     ++  M E G
Sbjct: 63  LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 122

Query: 345 CALDVDTFNTLMISFLQK 362
            A +V TFN+L+  F ++
Sbjct: 123 FAPNVMTFNSLVDGFCKR 140



 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKM--ATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           P N VT+N+++ G C+ G I++A QLV++M      C P+  T  T++  L  +  +   
Sbjct: 405 PPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEA 464

Query: 79  LKLHQEM 85
            +L ++M
Sbjct: 465 EQLLEQM 471


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 200/421 (47%), Gaps = 71/421 (16%)

Query: 2   SKVLGALMA-FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           S  LGA M  F   + R + P + VT+N+LI   C  G++ +A +L   M++  C PNV 
Sbjct: 229 SNELGAGMELFEELVERGHHP-DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVV 287

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   LI GL + G ++   +L QEM     D      PN+  Y S +DGLCK  +  +  
Sbjct: 288 TYSVLINGLCKVGRIDEARELIQEMTRKSCDV----LPNIITYNSFLDGLCKQSMTAEAC 343

Query: 121 DLFMEMKDKG--INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
           +L   ++D    ++ +T+        LCK  ++ EA  + + M+  G  P + TY  L+N
Sbjct: 344 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 403

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------- 223
           G C   K+  A A+ +SM  KG  PDV +YSVL++ +CK   V+EA+ +   M       
Sbjct: 404 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 463

Query: 224 -------ILNGFKK---------IFNEMKLCN-VVPETFTCNIFIDGLCKNGHVLE---V 263
                  I++G  K         +F++M L + +VP+  T    IDGL + G   +   +
Sbjct: 464 NVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEAL 523

Query: 264 MELFP----------------------TLEISNCELFVEI------FNSLIRGCCKFGIF 295
           ++  P                       L++ N  L +E+      FN LI G CK G F
Sbjct: 524 LDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNF 583

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           E AS LF ++  KNL  DV+ +  LI  L K GQ++    +L  M   G   +V T+N L
Sbjct: 584 EQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNAL 643

Query: 356 M 356
           +
Sbjct: 644 V 644



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/375 (29%), Positives = 187/375 (49%), Gaps = 44/375 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VTFN LI G C  GN   AS L ++M     +P+V T   LI GL + G     ++  
Sbjct: 566 DKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQ----VEAA 621

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +++++ MG+ G    PNV  Y +L+ GLCK   +++      EM   G   +++      
Sbjct: 622 RDILDLMGNLG--VPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLV 679

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+ ++  +A +L+  +   G +P   TY  L++G    G+   AI + + M  KG  
Sbjct: 680 YALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHH 739

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM-----------------ILNGF--------- 228
           PDV +Y+ LI+  CK  ++EEA  +  +M                 ++NG          
Sbjct: 740 PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEA 799

Query: 229 KKIFNEM--KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE--IFNS 284
           +++  EM  K C+V+P   T N F+DGLCK   + E  EL  +L   +  +  +   F++
Sbjct: 800 RELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFST 859

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI G CK G  + A  +F+ +     V +VV YN+L++ L K  ++++ + ++ SM + G
Sbjct: 860 LIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKG 919

Query: 345 CALDVDTFNTLMISF 359
              DV T++ L+ +F
Sbjct: 920 VTPDVITYSVLVDAF 934



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 173/367 (47%), Gaps = 36/367 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCR--PNVTTCDTLITGLRRTGNMNLTLK 80
           N +T+NS + G C +    +A +L++ +     R  P+  T  TLI GL + G ++    
Sbjct: 322 NIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACS 381

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           +  +M+       G Y PNV  Y +L++GLCK   +++   +   M DKG+  + +    
Sbjct: 382 VFDDMI------AGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSV 435

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA-RK 191
                CK +++ EA  LL  M  RG  P + T+  +++G C   +   A  +FD MA + 
Sbjct: 436 LVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKH 495

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM----------ILNGFKK---------IF 232
           G +PD  +Y  LI+G  +     +A  +   M           +NG  K         ++
Sbjct: 496 GLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVY 555

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           N M    +VP+  T NI I G CK G+  +   LF  +   N +  V  F +LI G CK 
Sbjct: 556 NRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKA 615

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  E A ++ + +    +  +VV YN L+H L K G+I++    L  M  +GC  D  T+
Sbjct: 616 GQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITY 675

Query: 353 NTLMISF 359
            +L+ + 
Sbjct: 676 GSLVYAL 682



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 167/349 (47%), Gaps = 29/349 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+N+L+ G C  G I +A Q +++M + GC P+  T  +L+  L R    +  L+
Sbjct: 634 PPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQ 693

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
           L  E+ +    FG  + P+   Y  L+DGL K    +Q   +  EM  KG     +  NT
Sbjct: 694 LVSELKS----FG--WDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNT 747

Query: 136 L---LCKKTKLVEANRL---LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
           L   LCK   L EA RL   +   + R   P + TY+ L+NG C VG+++ A  L   M 
Sbjct: 748 LIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMM 807

Query: 190 RKG--FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           RK    +P++ +Y+  ++G CK   + EA  + R +     +          V P+T T 
Sbjct: 808 RKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLR----------VSPDTVTF 857

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           +  IDGLCK G   E   +F  +        V  +N L+ G CK    E A  +   +  
Sbjct: 858 STLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVD 917

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K +  DV+ Y++L+ A  K   + +   LL  M   GC  +V TFN+++
Sbjct: 918 KGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSII 966



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 166/341 (48%), Gaps = 37/341 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N++I G C    +    +L +++   G  P+V T +TLI  L + G++    +LH +
Sbjct: 217 VTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGD 276

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-------INANTL- 136
           M +          PNV  Y  LI+GLCK   +D+ ++L  EM  K        I  N+  
Sbjct: 277 MSSRS------CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFL 330

Query: 137 --LCKKTKLVEANRLLELMMQRGL--NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             LCK++   EA  L+  +    L  +P   T++ L++G C  G+++ A ++FD M   G
Sbjct: 331 DGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGG 390

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           ++P+V +Y+ L+NG CK   +E A  +   M+  G            V P+  T ++ +D
Sbjct: 391 YVPNVITYNALVNGLCKADKMERAHAMIESMVDKG------------VTPDVITYSVLVD 438

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN-LV 311
             CK   V E +EL   +    C   V  FNS+I G CK      A ++F+ ++ K+ LV
Sbjct: 439 AFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLV 498

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
            D + Y  LI  L + G+  +   LL +M       D DT+
Sbjct: 499 PDKITYCTLIDGLFRTGRAGQAEALLDAMP------DPDTY 533



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 183/393 (46%), Gaps = 76/393 (19%)

Query: 7    ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF---GCRPNVTTCD 63
            A+      + + + P + VT+N+LI   C  G++ +A +L   M++     C PNV T  
Sbjct: 726  AITVLEEMVGKGHHP-DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYS 784

Query: 64   TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
             LI GL + G ++   +L QEM+    D      PN+  Y S +DGLCK  ++ +  +L 
Sbjct: 785  VLINGLCKVGRIDEARELIQEMMRKSCDV----LPNIITYNSFLDGLCKQSMMAEACELM 840

Query: 124  MEMKDKG--INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
              ++D    ++ +T+        LCK  +  EA  + + M+  G  P + TY  L+NG C
Sbjct: 841  RSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLC 900

Query: 174  LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---------- 223
               K+  A A+ +SM  KG  PDV +YSVL++ +CK  +V+EA+ +   M          
Sbjct: 901  KTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVV 960

Query: 224  ----ILNGFKK---------IFNEMKL-----------CNVV------------------ 241
                I++G  K         +F++M L           C ++                  
Sbjct: 961  TFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDA 1020

Query: 242  ---PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
               P+T+  N  I+GL K G V   +     LE+   ++    FN LI G CK G FE A
Sbjct: 1021 MPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKV---TFNILIAGACKAGNFEQA 1077

Query: 299  SELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            S LF ++  KNL  DV+ +  LI  L K GQ++
Sbjct: 1078 SALFEEMVAKNLQPDVMTFGALIDGLCKAGQVE 1110



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 156/339 (46%), Gaps = 21/339 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T++ L+  FC    + +A +L+  MA+ GC PNV T +++I GL ++       ++  +
Sbjct: 431 ITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDD 490

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-NTLLCKKTKL 143
           M    G       P+   Y +LIDGL +     Q + L   M D    A N  +   +KL
Sbjct: 491 MALKHG-----LVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKL 545

Query: 144 VEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            + +R L++   M++  L P   T+  L+ G C  G    A ALF+ M  K   PDV ++
Sbjct: 546 GDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTF 605

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
             LI+G CK   VE A            + I + M    V P   T N  + GLCK+G +
Sbjct: 606 GALIDGLCKAGQVEAA------------RDILDLMGNLGVPPNVVTYNALVHGLCKSGRI 653

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            E  +    +  S C      + SL+   C+    + A +L ++L       D V YNIL
Sbjct: 654 EEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNIL 713

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +  L K GQ ++   +L  M   G   DV T+NTL+ S 
Sbjct: 714 VDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSL 752



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 159/345 (46%), Gaps = 28/345 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +FN  +      G+   A  L +      CRPN  T  TL+    + G          E 
Sbjct: 113 SFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGG-------DVER 165

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM-EMKDKGINA-----NTL--- 136
             G          +V  Y  ++  LC+     +  ++F  EM   G+       NT+   
Sbjct: 166 TLGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIING 225

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  +L     L E +++RG +P + TY  L++  C  G +  A  L   M+ +  +P+
Sbjct: 226 LCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPN 285

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +YSVLING CK   ++EA  + +EM            K C+V+P   T N F+DGLCK
Sbjct: 286 VVTYSVLINGLCKVGRIDEARELIQEMT----------RKSCDVLPNIITYNSFLDGLCK 335

Query: 257 NGHVLEVMELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
                E  EL  +L   +  +  +   F++LI G CK G  + A  +F+ +     V +V
Sbjct: 336 QSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNV 395

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + YN L++ L K  ++++ + ++ SM + G   DV T++ L+ +F
Sbjct: 396 ITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 440



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 6/196 (3%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            +T++ L+  FC   ++ +A +L+  MA+ GC PNV T +++I GL ++       ++  +
Sbjct: 925  ITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDD 984

Query: 85   MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-NTLLCKKTKL 143
            M    G       P+   Y +LIDGL +     Q + L   M D    A N  +   +KL
Sbjct: 985  MTLKHG-----LAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKL 1039

Query: 144  VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
             + +R L  M++  L P   T+  L+ G C  G    A ALF+ M  K   PDV ++  L
Sbjct: 1040 GDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGAL 1099

Query: 204  INGYCKNFNVEEAMNV 219
            I+G CK   VE   ++
Sbjct: 1100 IDGLCKAGQVEATWDI 1115



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 95/225 (42%), Gaps = 25/225 (11%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING-YCKNFNVEE 215
           G    IF++   LN     G    AI LF S       P+ F+YS L+   Y    +VE 
Sbjct: 106 GFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVER 165

Query: 216 AMN------------VSREMILNGFKK---------IF-NEMKLCNVVPETFTCNIFIDG 253
            +                 ++L    +         IF  EM    V P   T N  I+G
Sbjct: 166 TLGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIING 225

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK+  +   MELF  L        V  +N+LI   CK G  E A  L   +S ++ V +
Sbjct: 226 LCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPN 285

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCAL--DVDTFNTLM 356
           VV Y++LI+ L K G+I +   L+  M    C +  ++ T+N+ +
Sbjct: 286 VVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFL 330


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 173/362 (47%), Gaps = 28/362 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V  AL+ +    R C   +  +T+  L+   C    I DAS +++ M   GC PNV T 
Sbjct: 217 RVDSALVHYRDMQRNCAPSV--ITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTY 274

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI G  + GNM+  + L  +M+           P+VF Y  LIDG CK         L
Sbjct: 275 NTLINGFCKLGNMDEAVVLFNQMLENSC------SPDVFTYNILIDGYCKQERPQDGAKL 328

Query: 123 FMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM   G     I  NTL   L K  K ++A  L ++M++R   P  FT+  +++ +C 
Sbjct: 329 LQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCK 388

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           VG++++A  LF  M  +G +PD+++Y+++I+G C+   +++A            +++   
Sbjct: 389 VGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDA------------RQLLER 436

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M      P+  T N  + GLCK   V E  E++  L      L V   ++LI G CK   
Sbjct: 437 MTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRR 496

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A +L  ++       DVVAY ILIH   K  Q+ K       M + GC   V T++ 
Sbjct: 497 LDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSI 556

Query: 355 LM 356
           ++
Sbjct: 557 VI 558



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 168/357 (47%), Gaps = 27/357 (7%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +RR  +P +  TFN +I  FC  G +  A +L + M   GC P++ T + +I+G  R   
Sbjct: 368 LRRDCKP-SHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANR 426

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG---- 130
           ++   +L + M            P+V  Y S++ GLCK   VD+  +++  +++ G    
Sbjct: 427 IDDARQLLERMTEAGC------PPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLD 480

Query: 131 -INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +  +TL   LCK  +L +A +LL  M + G  P +  YT L++G+C   +++ ++A F 
Sbjct: 481 VVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFS 540

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M  KG +P V +YS++I+  CK+  V +   + + M+  G            V P+   
Sbjct: 541 EMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG------------VTPDAIV 588

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
               IDGLCK+    E  EL+  ++ + C   V  +N L+   CK    + A  L   + 
Sbjct: 589 YTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVME 648

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               + D V YN +     K  +  K   L  +M+  GC+     ++ L+   + +E
Sbjct: 649 SDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEE 705



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 159/334 (47%), Gaps = 46/334 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + +T+++LI GFC   + + A +L+ +M   G  P+    +T+I GL   G ++  L  +
Sbjct: 166 DSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHY 225

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
           ++M            P+V  Y  L+D LCK                             +
Sbjct: 226 RDMQRNCA-------PSVITYTILVDALCK---------------------------SAR 251

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           + +A+ +LE M++ G  P + TY  L+NG+C +G ++ A+ LF+ M      PDVF+Y++
Sbjct: 252 ISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNI 311

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI+GYCK    ++   + +EM+  G +            P   T N  +D L K+G  ++
Sbjct: 312 LIDGYCKQERPQDGAKLLQEMVKYGCE------------PNFITYNTLMDSLVKSGKYID 359

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
              L   +   +C+     FN +I   CK G  ++A ELF  ++ +  + D+  YNI+I 
Sbjct: 360 AFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMIS 419

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +  +I     LL  M E GC  DV T+N+++
Sbjct: 420 GACRANRIDDARQLLERMTEAGCPPDVVTYNSIV 453



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 13/223 (5%)

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +K K  EA  L +       +P   TY+ L+NG+C       A  L D M ++G +P   
Sbjct: 144 RKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNA 203

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            Y+ +I G C N  V+ A+   R+M  N               P   T  I +D LCK+ 
Sbjct: 204 VYNTIIKGLCDNGRVDSALVHYRDMQRN-------------CAPSVITYTILVDALCKSA 250

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   +   +  + C   V  +N+LI G CK G  + A  LFN++   +   DV  YN
Sbjct: 251 RISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYN 310

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           ILI    K+ + +    LL  M + GC  +  T+NTLM S ++
Sbjct: 311 ILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVK 353



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 107/243 (44%), Gaps = 37/243 (15%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT ++LI G C    + DA +L+++M   G  P+V     LI G  +   ++ +L  
Sbjct: 479 LDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAF 538

Query: 82  HQEMVNG---------------------MGDFGGIYK--------PNVFCYGSLIDGLCK 112
             EM++                      + D   + K        P+   Y S+IDGLCK
Sbjct: 539 FSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCK 598

Query: 113 DRLVDQTKDLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFT 164
               D+  +L+  MK  G     +  N L   LCK ++L EA  LLE+M   G  P   T
Sbjct: 599 SDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVT 658

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  + +G+    + + A  LF +M  +G  P  F YS+L+        +++AM +  E +
Sbjct: 659 YNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEAL 718

Query: 225 LNG 227
             G
Sbjct: 719 EAG 721



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 13/209 (6%)

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           Q G     FT   LL+ +    K   A  LF +       PD  +YS LING+CK  + +
Sbjct: 125 QPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQ 184

Query: 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +A             ++ +EM+   +VP     N  I GLC NG V   +  +  ++  N
Sbjct: 185 QAY------------RLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RN 231

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V  +  L+   CK      AS +   +       +VV YN LI+   K G + +  
Sbjct: 232 CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAV 291

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQKE 363
            L   M EN C+ DV T+N L+  + ++E
Sbjct: 292 VLFNQMLENSCSPDVFTYNILIDGYCKQE 320


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 175/344 (50%), Gaps = 27/344 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLK 80
            ++V+ N ++ GFC EG + DA   +++M+   G  P+  T +TL+ GL + G++   ++
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE 316

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           +   M+         Y P+V+ Y S+I GLCK   V +  +   +M  +  + NT+    
Sbjct: 317 IMDVMLQEG------YDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNT 370

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK+ ++ EA  L  ++  +G+ P + T+  L+ G CL     VA+ LF+ M  KG
Sbjct: 371 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG 430

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD F+Y++LI+  C    ++EA+N+ ++M L+G  +               T N  ID
Sbjct: 431 CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR------------SVITYNTLID 478

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CK   + E  E+F  +E+         +N+LI G CK    E AS+L +++  +    
Sbjct: 479 GFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKP 538

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D   YN L+    + G IKK   ++ +M  NGC  D+ T+ TL+
Sbjct: 539 DKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 176/366 (48%), Gaps = 38/366 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LIK  C    +R A  +++ M ++G  P+  T  T++ G    G+++  L++ ++M
Sbjct: 191 TFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQM 250

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTL--- 136
           V    +FG  +  NV     ++ G CK+  V+   +   EM ++          NTL   
Sbjct: 251 V----EFGCSWS-NV-SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNG 304

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   +  A  ++++M+Q G +P ++TY  +++G C +G+V  A+   D M  +   P+
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPN 364

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFN 233
             +Y+ LI+  CK   VEEA  ++R +   G                         ++F 
Sbjct: 365 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFE 424

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM+     P+ FT N+ ID LC  G + E + +   +E+S C   V  +N+LI G CK  
Sbjct: 425 EMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKAN 484

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A E+F+++    +  + V YN LI  L K  +++  + L+  M   G   D  T+N
Sbjct: 485 KIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYN 544

Query: 354 TLMISF 359
           +L+  F
Sbjct: 545 SLLTHF 550



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 168/348 (48%), Gaps = 30/348 (8%)

Query: 15  IRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           ++  Y P  DV T+NS+I G C  G +++A + + +M T  C PN  T +TLI+ L +  
Sbjct: 322 LQEGYDP--DVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKEN 379

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            +    +L + + +      GI  P+V  + SLI GLC  R      +LF EM+ KG   
Sbjct: 380 QVEEATELARVLTSK-----GIL-PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEP 433

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +          LC K KL EA  +L+ M   G    + TY  L++G+C   K+  A  +F
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIF 493

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           D M   G   +  +Y+ LI+G CK+  VE+A  +  +MI+ G K            P+ F
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQK------------PDKF 541

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T N  +   C+ G + +  ++   +  + CE  +  + +LI G CK G  E+AS+L   +
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM-EENGCALDVDTF 352
             K +     AYN +I  L ++ +  +   L   M E+N  A D  ++
Sbjct: 602 QMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSY 649



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 138/282 (48%), Gaps = 28/282 (9%)

Query: 22  LNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           L DV TFNSLI+G C+  N R A +L ++M + GC P+  T + LI  L   G ++  L 
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           + ++M     +  G  + +V  Y +LIDG CK   + + +++F EM+  G++ N++    
Sbjct: 457 MLKQM-----ELSGCAR-SVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNT 510

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  ++ +A++L++ M+  G  P  FTY  LL  +C  G +  A  +  +M   G
Sbjct: 511 LIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+ +Y  LI+G CK   VE A  + R +          +MK   + P  +  N  I 
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSI----------QMKGIALTPHAY--NPVIQ 618

Query: 253 GLCKNGHVLEVMELF-PTLEISNCELFVEIFNSLIRGCCKFG 293
           GL +     E + LF   LE +        +  + RG C  G
Sbjct: 619 GLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGG 660



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 155/344 (45%), Gaps = 41/344 (11%)

Query: 46  LVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS 105
           L  K   F   P +   + ++  L R+G+ +   K+ ++M N   + G    P +     
Sbjct: 72  LASKKPNFSPEPALY--EEILLRLGRSGSFDDMRKILEDMKNSGCEMGT--SPFLI---- 123

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDK-GINANTLLCKK--TKLVEAN--RLLEL----MMQR 156
           LI+   +  L D+   +   M D  G+  +T    +    LV+ N  +L+E+    M   
Sbjct: 124 LIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVW 183

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+ P + T+  L+   C   ++  AI + + M   G +PD  +++ ++ GY +  +++ A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGA 243

Query: 217 M--------------NVSREMILNGFKKIFNEMKLCNVV----------PETFTCNIFID 252
           +              NVS  +I++GF K        N +          P+ +T N  ++
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK GHV   +E+   +     +  V  +NS+I G CK G  + A E  +++  ++   
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSP 363

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + V YN LI  L KE Q+++   L   +   G   DV TFN+L+
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 20/250 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI G C    + DASQL+ +M   G +P+  T ++L+T   R G+    +K  
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGD----IKKA 559

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++V  M   G   +P++  YG+LI GLCK   V+    L   ++ KGI           
Sbjct: 560 ADIVQAMTSNG--CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVI 617

Query: 137 --LCKKTKLVEA-NRLLELMMQRGLNPVIFTYTPLLNGYC-LVGKVNVAIALFDSMARKG 192
             L +K K  EA N   E++ Q    P   +Y  +  G C   G +  A+     +  KG
Sbjct: 618 QGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKG 677

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F+P+  S  +L  G     ++EE +     M++   K  F+E ++ ++V        F D
Sbjct: 678 FVPEFSSLYMLAEGLL-TLSMEETLVKLVNMVMQ--KARFSEEEV-SMVKGLLKIRKFQD 733

Query: 253 GLCKNGHVLE 262
            L   G VL+
Sbjct: 734 ALATLGGVLD 743


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 188/371 (50%), Gaps = 37/371 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   FN +   +  +  I +A  +  KM   G  P+V +   LI  L + G ++  +   
Sbjct: 335 NRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQF 394

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL- 136
            +M+N      G+  PN+F + SL+ GLC     ++ ++LF E+ D+GI       NTL 
Sbjct: 395 NQMINE-----GV-TPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLM 448

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC + +++EA RL++LM++ G+ P + +Y  L+ G+CL G+++ A  L D M   G  
Sbjct: 449 CNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLK 508

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF-------------------NEM 235
           P+ F+Y++L+ GYCK   V++A ++ REM++ G   +                    NE+
Sbjct: 509 PNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANEL 568

Query: 236 KLCNVVPET----FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            L  +   T    +T NI ++GLCKN  V E  ++F  L   + +L    FN +I    K
Sbjct: 569 YLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLK 628

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A +LF  +S   LV DVV Y ++   L +EG + + + L  +ME++G A +   
Sbjct: 629 GGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHM 688

Query: 352 FNTLMISFLQK 362
            N L+   L +
Sbjct: 689 LNALVRRLLHR 699



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 184/379 (48%), Gaps = 39/379 (10%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITG 68
           AFG  ++  +R +N +  + L+KG C    + +A+  L+ +M+ FGC P+V   +T+I G
Sbjct: 112 AFGLILKTGWR-VNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVING 170

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
             R G +     L  EM++      GI  PNV  Y ++IDGLCK ++VD+ K +F +M D
Sbjct: 171 FFREGQVEKAYNLFLEMMDQ-----GI-PPNVVTYTTVIDGLCKAQVVDRAKGVFQQMID 224

Query: 129 KGINAN--TLLC------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +G+  +  T  C         K  E  ++LE M   GL P   TY  LL+  C  G+   
Sbjct: 225 RGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCRE 284

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----------- 229
           A   FDSM RKG  PDV  Y++L++GY     + E  +    M+ NG             
Sbjct: 285 ARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFC 344

Query: 230 ------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        IFN+M+   + P+  +    ID LCK G V + +  F  +       
Sbjct: 345 AYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTP 404

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            + +F+SL+ G C  G +E A ELF ++  + +  D V +N L+  L  EG++ +   L+
Sbjct: 405 NIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLI 464

Query: 338 LSMEENGCALDVDTFNTLM 356
             M   G   +V ++NTL+
Sbjct: 465 DLMIRVGVRPNVISYNTLV 483



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 141/357 (39%), Gaps = 60/357 (16%)

Query: 17  RCYRPLNDVTFNSLI----KGFCMEGNIRDASQLVKKMA---TFGCRPNVTTCDTLITGL 69
            C RP +   FN L+    +  C   + R  S L  +MA   +    PN  T   LI   
Sbjct: 42  HCARPASVRAFNQLLTVVSRAGCSSASERVVS-LFTRMARECSSKVAPNACTYSILIGCF 100

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            R G +           +G   FG I    ++ NV     L+ GLC  + VD+  D+   
Sbjct: 101 CRMGRLE----------HGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDI--- 147

Query: 126 MKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
                                  LL  M + G  P +  Y  ++NG+   G+V  A  LF
Sbjct: 148 -----------------------LLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLF 184

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             M  +G  P+V +Y+ +I+G CK   V+ A  V ++MI  G K            P+  
Sbjct: 185 LEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVK------------PDNG 232

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T N  I G    G   EV+++   +     E     +  L+   CK G    A   F+ +
Sbjct: 233 TYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSM 292

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             K +  DV  Y IL+H    +G + + +  L  M  NG + +   FN +  ++ +K
Sbjct: 293 FRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKK 349



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 127/327 (38%), Gaps = 62/327 (18%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V+ A       IR   RP N +++N+L+ G C+ G I +A++L+  M + G +PN  T 
Sbjct: 456 RVMEAQRLIDLMIRVGVRP-NVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTY 514

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             L+ G                                          CK R VD    L
Sbjct: 515 TILLRG-----------------------------------------YCKARRVDDAYSL 533

Query: 123 FMEMKDKGINA-----NTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EM  KG+       NT+L    +  +  EAN L   M+       I+TY  +LNG C 
Sbjct: 534 FREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCK 593

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
              V+ A  +F  +  K    D  +++++I    K    E+AM+            +F  
Sbjct: 594 NNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMD------------LFAT 641

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           +    +VP+  T  +  + L + G + E   LF  +E S       + N+L+R     G 
Sbjct: 642 ISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGD 701

Query: 295 FEIASELFNKLSCKNLVADVVAYNILI 321
              A     KL  KN   +    ++LI
Sbjct: 702 ISRAGVYLYKLDEKNFSLEASTTSMLI 728


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 176/333 (52%), Gaps = 27/333 (8%)

Query: 33  GFCMEGNIRDASQLVKKMA-TFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGD 91
           GFC EG I +A + +++M+   G  P+  T + L+ GL +TG++   L++   M+    D
Sbjct: 274 GFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFD 333

Query: 92  FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKL 143
                 P+++ Y SLI GLCK   VD+   +  +M ++  + NT+        LCK+ ++
Sbjct: 334 ------PDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQV 387

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA +L  ++  +G+ P + TY  L+ G CL     VA+ L+  M  KG  PD F+Y++L
Sbjct: 388 EEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNML 447

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I+  C    ++EA+N+ +EM ++G  +        NV+    T N  IDG CKN  + E 
Sbjct: 448 IDSLCFRGKLQEALNLLKEMEVSGCAR--------NVI----TYNTLIDGFCKNKRIAEA 495

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
            E+F  +E+         +N+LI G CK    E AS+L +++  + L  D   YN L+  
Sbjct: 496 EEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTY 555

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             K G IKK   ++ +M  +GC  D+ T+ TL+
Sbjct: 556 FCKAGDIKKAADIVQTMASDGCEPDIVTYGTLI 588



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 169/360 (46%), Gaps = 27/360 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T  V  AL      +R  + P +  T+NSLI G C  G + +A +++ +M    C PN  
Sbjct: 314 TGHVKHALEVMDMMLREGFDP-DIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTV 372

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T +T+I+ L +   +    KL   ++ G G       P+V  Y SLI GLC  R      
Sbjct: 373 TYNTIISTLCKENQVEEATKLAL-VLTGKGIL-----PDVCTYNSLIQGLCLSRNHTVAM 426

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L+ EMK KG + +          LC + KL EA  LL+ M   G    + TY  L++G+
Sbjct: 427 ELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGF 486

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C   ++  A  +FD M  +G   +  +Y+ LI+G CK+  VEEA  +  +MI+ G +   
Sbjct: 487 CKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLR--- 543

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                    P+ FT N  +   CK G + +  ++  T+    CE  +  + +LI G CK 
Sbjct: 544 ---------PDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKA 594

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  E A++L   +  K +     AYN +I AL +  + K+   L   M E   A D  T+
Sbjct: 595 GRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTY 654



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 184/387 (47%), Gaps = 47/387 (12%)

Query: 9   MAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           +A  + + R  RP  DV TFN LIK  C    IR A  L+++M  FG  P+  T  T++ 
Sbjct: 181 IAHSNMVSRGIRP--DVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQ 238

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G    GN++  +++ ++MV       G           L++G CK+  +++      EM 
Sbjct: 239 GFIEEGNLDGAMRVKEQMVEA-----GCVV-TNVTVNVLVNGFCKEGRIEEALRFIEEMS 292

Query: 128 -------DKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
                  DK    N L   L K   +  A  ++++M++ G +P I+TY  L++G C +G+
Sbjct: 293 LREGFFPDK-YTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGE 351

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG---------- 227
           V+ A+ + + M  +   P+  +Y+ +I+  CK   VEEA  ++  ++L G          
Sbjct: 352 VDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLA--LVLTGKGILPDVCTY 409

Query: 228 ---------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                            +++ EMK     P+ FT N+ ID LC  G + E + L   +E+
Sbjct: 410 NSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEV 469

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           S C   V  +N+LI G CK      A E+F+++  + +  + V YN LI  L K  ++++
Sbjct: 470 SGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEE 529

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
            + L+  M   G   D  T+N+L+  F
Sbjct: 530 ASQLMDQMIMEGLRPDKFTYNSLLTYF 556



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 142/282 (50%), Gaps = 29/282 (10%)

Query: 22  LNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           L DV T+NSLI+G C+  N   A +L K+M T GC P+  T + LI  L   G +   L 
Sbjct: 403 LPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALN 462

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L +EM     +  G  + NV  Y +LIDG CK++ + + +++F +M+ +G++ N++    
Sbjct: 463 LLKEM-----EVSGCAR-NVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNT 516

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  ++ EA++L++ M+  GL P  FTY  LL  +C  G +  A  +  +MA  G
Sbjct: 517 LIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDG 576

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+ +Y  LI G CK   VE A  + R +          +MK  N+ P  +  N  I 
Sbjct: 577 CEPDIVTYGTLIAGLCKAGRVEAATKLLRTI----------QMKGINLTPHAY--NPVIQ 624

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKFG 293
            L +     E + LF  + I   E    + +  + RG C+ G
Sbjct: 625 ALFRRKRSKEAVRLFREM-IEKAEAPDAVTYKIVFRGLCQGG 665



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 139/329 (42%), Gaps = 68/329 (20%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK---------------------------- 127
           +KP+   +  ++  L K    D  KD+  EMK                            
Sbjct: 85  FKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLVFIESYASFGLYNEIL 144

Query: 128 --------DKGINANTLLCK--KTKLVEAN--RLLEL----MMQRGLNPVIFTYTPLLNG 171
                   + G+ ANT         LV+ N  +L+E+    M+ RG+ P + T+  L+  
Sbjct: 145 QFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKA 204

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-- 229
            C   ++  AI L + M   G +PD  +++ ++ G+ +  N++ AM V  +M+  G    
Sbjct: 205 LCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVT 264

Query: 230 ---------------------KIFNEMKLCN-VVPETFTCNIFIDGLCKNGHVLEVMELF 267
                                +   EM L     P+ +T N+ ++GL K GHV   +E+ 
Sbjct: 265 NVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVM 324

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +     +  +  +NSLI G CK G  + A ++ N++  ++   + V YN +I  L KE
Sbjct: 325 DMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKE 384

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
            Q+++   L L +   G   DV T+N+L+
Sbjct: 385 NQVEEATKLALVLTGKGILPDVCTYNSLI 413



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE-----ISNCELFV 279
            +  K I  EMK+   V +  +  +FI+     G   E+++    +E     ++N   + 
Sbjct: 105 FDAMKDILKEMKISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYN 164

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            + N L+ G  K  + EIA    + +  + +  DV  +NILI AL +  QI+    L+  
Sbjct: 165 FLLNVLVDG-NKLKLVEIAH---SNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEE 220

Query: 340 MEENGCALDVDTFNTLMISFLQK 362
           ME+ G   D  TF T+M  F+++
Sbjct: 221 MEDFGLLPDEKTFTTIMQGFIEE 243


>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 174/342 (50%), Gaps = 29/342 (8%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
               ++R Y+P + +TF +LIKG C++G +  A     K+   G + +  +  TLI G+ 
Sbjct: 128 LAKILKRGYQP-HTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVC 186

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G+    +KL +++       G + KPNV  Y ++ID LCK +LV +   LF EM  KG
Sbjct: 187 KIGDTRGAIKLVRKID------GRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKG 240

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           I+AN +         CK   + EA  L + M Q+ + P I TY  L++G C  G+++   
Sbjct: 241 ISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVW 300

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            L D M  +G   DV +Y+ LI+G CKN +++ A+             +FN+MK      
Sbjct: 301 ELIDEMHDRGIPADVITYNSLIDGLCKNGHLDRAI------------ALFNKMKDXRFDR 348

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
            TFT  I +DGLCK G + +  E+F  L     +L V  +N +I G CK G+ E A  + 
Sbjct: 349 LTFT--ILLDGLCKGGRLKDAQEVFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMR 406

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +K+     +   V + I+I+AL ++ +  K   LL  M   G
Sbjct: 407 SKMEDNGCIPSAVTFEIIINALFEKDENDKAEKLLHEMIARG 448



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 121/269 (44%), Gaps = 20/269 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TL------LCKKTKLVEAN 147
           + P V  +  ++D     +       L   ++ KGI  +  TL       C   ++    
Sbjct: 66  HTPPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNILMNCFCHMGQINFGF 125

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L  +++RG  P   T+T L+ G CL G+VN A+   D +  +G   D  SY  LING 
Sbjct: 126 SVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGV 185

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK  +   A+ + R        KI   +   NV  E +  N  ID LCK   V E   LF
Sbjct: 186 CKIGDTRGAIKLVR--------KIDGRLTKPNV--EMY--NTIIDALCKYQLVSEAYGLF 233

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +        V  +N +I+G CK  + + A  LF ++  KN+V  +V Y  L+  L K 
Sbjct: 234 SEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKS 293

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
           G+I     L+  M + G   DV T+N+L+
Sbjct: 294 GRISYVWELIDEMHDRGIPADVITYNSLI 322


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/384 (31%), Positives = 178/384 (46%), Gaps = 51/384 (13%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C  P+N +T+N LI G C  G +  A++++K M T GC+PN  T   LI G  R  NM  
Sbjct: 362 CGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGR 421

Query: 78  TLKLHQEM---------------VNGMGD---------------FGGIYKPNVFCYGSLI 107
            L+L  EM               +NG+                 F G+ KPNV  Y  LI
Sbjct: 422 ALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGL-KPNVVVYSILI 480

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLN 159
                +  +++ + L   M   G+  +        + L K  K+ EA+  L  +  RGL 
Sbjct: 481 MAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK 540

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P   T+   + GY   GK+  A   FD M   G MP+   Y+VLING+ K  N+ EA++ 
Sbjct: 541 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS- 599

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                      IF  +    V+P+  TC+ FI GL KNG V E +++F  L+       V
Sbjct: 600 -----------IFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 648

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             ++SLI G CK G  E A EL +++  K +  ++  YN L+  L K G I++   L   
Sbjct: 649 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 708

Query: 340 MEENGCALDVDTFNTLMISFLQKE 363
           M E G   D  T++T++  + + E
Sbjct: 709 MPEKGLEPDSVTYSTMIDGYCKSE 732



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 173/371 (46%), Gaps = 28/371 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T K+  A   F   +     P N+  +  LI G    GN+ +A  + +++   G  P+V 
Sbjct: 556 TGKMTEAAKYFDEMLDHGLMP-NNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQ 614

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           TC   I GL + G +   LK+  E+        G+  P+VF Y SLI G CK   V++  
Sbjct: 615 TCSAFIHGLLKNGRVQEALKVFSELKEK-----GLV-PDVFTYSSLISGFCKQGEVEKAF 668

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L  EM  KGI  N          LCK   +  A +L + M ++GL P   TY+ +++GY
Sbjct: 669 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 728

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C    V  A +LF  M  KG  P  F Y+ L++G CK  ++E+AMN+ REM+  GF    
Sbjct: 729 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-- 786

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                      T + N  IDG CK+  + E  +LF  +           + ++I   CK 
Sbjct: 787 -----------TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKA 835

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  E A+ LF ++  +NL+ D V Y  L++   K GQ  +   L   M   G   D  T+
Sbjct: 836 GKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTY 895

Query: 353 NTLMISFLQKE 363
             ++ +  +++
Sbjct: 896 GLVIYAHCKED 906



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 172/386 (44%), Gaps = 50/386 (12%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           F  R Y   + V F+ LI  +   G + +A+ +           ++  C++L+  L + G
Sbjct: 148 FWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCG 207

Query: 74  NMNLTLKLHQEMVNG------------------MGDFGGIYK-----------PNVFCYG 104
            M L  K++  M++                    GD  G  +           PN F Y 
Sbjct: 208 MMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYS 267

Query: 105 SLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQR 156
            +I+G+C+   +D+  +L   M +KG+  NT         LC+  ++ EA    E M + 
Sbjct: 268 LVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKT 327

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           GL P     + L++G+   G ++  + + D M   G   ++ +Y+VLI+G CK   +E+A
Sbjct: 328 GLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKA 387

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
             + + M+  G K            P + T  + I+G C+  ++   +EL   +E  N  
Sbjct: 388 AEILKGMVTLGCK------------PNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLV 435

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
                + ++I G C      +A++L  K++   L  +VV Y+ILI A   EG+I++   L
Sbjct: 436 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRL 495

Query: 337 LLSMEENGCALDVDTFNTLMISFLQK 362
           L  M  +G A D+  +N + IS L K
Sbjct: 496 LDGMSCSGVAPDIFCYNAI-ISCLSK 520



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 138/302 (45%), Gaps = 29/302 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT++++I G+C   N+ +A  L  +M + G +P+    + L+ G  + G+M   + L 
Sbjct: 717 DSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLF 776

Query: 83  QEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
           +EM+  G              + +LIDG CK   + +   LF EM  K I  + +     
Sbjct: 777 REMLQKGFA--------TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTV 828

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               CK  K+ EAN L + M +R L     TYT L+ GY  +G+ +   ALF+ M  KG 
Sbjct: 829 IDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGV 888

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD  +Y ++I  +CK  N+ EA  +  E++  G            ++ +    ++ I  
Sbjct: 889 KPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKG------------MLTKGTIHDLLITA 936

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK   + E  +L   +     +  +   N+L+R   + G  + A+ +F  +    LV D
Sbjct: 937 LCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 996

Query: 314 VV 315
             
Sbjct: 997 TT 998



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 39/238 (16%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM---NLTLKL 81
            ++FN+LI G+C    I++ASQL ++M      P+  T  T+I    + G M   NL  K 
Sbjct: 788  LSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKE 847

Query: 82   HQEM---------------VNGMGDFGGIY-----------KPNVFCYGSLIDGLCK-DR 114
             QE                 N +G    ++           KP+   YG +I   CK D 
Sbjct: 848  MQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDN 907

Query: 115  LVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
            LV+  K L  E+  KG+           T LCK+  L EA++LL+ M + GL P +    
Sbjct: 908  LVEAFK-LRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACN 966

Query: 167  PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
             L+  +   GK++ A  +F+ +   G +PD  +   L+NG   + + E+A N+ ++++
Sbjct: 967  TLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 1024


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 185/379 (48%), Gaps = 38/379 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R    P +   F+ LI  +  +G +  A  +  KM   G  PN  T   +I  L ++G 
Sbjct: 363 VRNGIHP-DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           +   +   ++M+    D G    P    Y SLI GLC     ++ ++L +EM D+GI  N
Sbjct: 422 VEDAMLYFEQMI----DEG--LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 475

Query: 135 TLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           T+         CK+ +++E+ +L ELM++ G+ P + TY  L+NGYCL GK++ A+ L  
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---- 228
            M   G  P+  +YS LINGYCK   +E+A+ + +EM              IL G     
Sbjct: 536 GMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR 595

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                K+++  +       E  T NI + GLCKN    + +++F  L + + +L    FN
Sbjct: 596 RTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFN 655

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            +I    K G  + A +LF   S   LV +   Y ++   +  +G +++ + L LSME+N
Sbjct: 656 IMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN 715

Query: 344 GCALDVDTFNTLMISFLQK 362
           GC +D    N ++   LQ+
Sbjct: 716 GCTVDSGMLNFIVRELLQR 734



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 169/381 (44%), Gaps = 36/381 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ I++ +R ++ + F  L+KG C +    DA  +V ++M   GC PNV + + L+ G
Sbjct: 109 ALGNVIKKGFR-VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKG 167

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +   D GG   P+V  Y ++I+G  K+   D+    + EM D
Sbjct: 168 LCDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLD 224

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  + +        LCK   + +A  +L  M++ G+ P   TY  +L+GYC  G+   
Sbjct: 225 RGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE 284

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
           AI     M   G  PDV +YS+L++  CKN    EA  +   M   G K           
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344

Query: 231 -------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        + + M    + P+ +  +I I    K G V + M +F  +       
Sbjct: 345 GYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP 404

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               + ++I   CK G  E A   F ++  + L    + YN LIH L    + ++   L+
Sbjct: 405 NAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464

Query: 338 LSMEENGCALDVDTFNTLMIS 358
           L M + G  L+   FN+++ S
Sbjct: 465 LEMLDRGICLNTIFFNSIIDS 485



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 159/345 (46%), Gaps = 28/345 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++ ++I GF  EG+   A     +M   G  P+V T +++I  L +   M+  ++
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAME 252

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +   MV NG+        P+   Y S++ G C      +      +M+  G+  + +   
Sbjct: 253 VLNTMVKNGV-------MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYS 305

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  + +EA ++ + M +RGL P I TY  LL GY   G +     L D M R 
Sbjct: 306 LLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PD + +S+LI  Y K   V++AM V            F++M+   + P   T    I
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLV------------FSKMRQQGLNPNAVTYGAVI 413

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK+G V + M  F  +          ++NSLI G C    +E A EL  ++  + + 
Sbjct: 414 GILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC 473

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            + + +N +I +  KEG++ +   L   M   G   +V T+NTL+
Sbjct: 474 LNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 142/333 (42%), Gaps = 41/333 (12%)

Query: 49  KMATFGC---RPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVF 101
           +MA  G     P++ T   LI    R G ++L          G    G +    ++ +  
Sbjct: 74  RMARAGADEVTPDLCTYGILIGCCCRAGRLDL----------GFAALGNVIKKGFRVDAI 123

Query: 102 CYGSLIDGLCKDRLVDQTKDLFME-MKDKGINANTL--------LCKKTKLVEANRLLEL 152
            +  L+ GLC D+      D+ +  M + G   N          LC + +  EA  LL +
Sbjct: 124 AFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHM 183

Query: 153 MMQR---GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           M      G  P + +YT ++NG+   G  + A + +  M  +G +PDV +Y+ +I   CK
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              +++AM V   M+ NG            V+P+  T N  + G C +G   E +     
Sbjct: 244 AQAMDKAMEVLNTMVKNG------------VMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     E  V  ++ L+   CK G    A ++F+ ++ + L  ++  Y  L+     +G 
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + + + LL  M  NG   D   F+ L+ ++ ++
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQ 384



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 43/206 (20%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A   ++ +KGF  D  +++ L+ G C +    +AM
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           ++           +   M     +P  F+ NI + GLC      E +EL   +       
Sbjct: 143 DI-----------VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD---- 187

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
                    RG                        DVV+Y  +I+   KEG   K     
Sbjct: 188 ---------RG-------------------GGSPPDVVSYTTVINGFFKEGDSDKAYSTY 219

Query: 338 LSMEENGCALDVDTFNTLMISFLQKE 363
             M + G   DV T+N+++ +  + +
Sbjct: 220 HEMLDRGILPDVVTYNSIIAALCKAQ 245


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 193/381 (50%), Gaps = 45/381 (11%)

Query: 21  PLNDVTFNSLIKGFCMEG--------NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           P + V++N+++ GF  EG         +  A +++  M   G  P+  T ++++ G   +
Sbjct: 198 PPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 257

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
           G     +   ++M +      G+ +PNV  Y SL++ LCK+    + + +F  M  +G+ 
Sbjct: 258 GQPKEAIGTLKKMRSD-----GV-EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLE 311

Query: 133 AN-----TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            +     TLL   CK+ +++E+ +L +LM++ G+ P I TY  L++G CL GK++ A  L
Sbjct: 312 PDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL 371

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---------------- 228
             SM   G  PD+ +Y  LINGYC+   +++A+ + +EM+ +G                 
Sbjct: 372 LASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 431

Query: 229 -------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
                  K+++  +       E  T NI + GLCKN    E + +F  L +++ +L    
Sbjct: 432 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 491

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           FN +I    K G  + A +LF   S   LV DV  Y+++   L ++G +++ + L LSME
Sbjct: 492 FNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSME 551

Query: 342 ENGCALDVDTFNTLMISFLQK 362
           ENGC+ D    N+++   LQ+
Sbjct: 552 ENGCSADSRMLNSIVRKLLQR 572



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 119/284 (41%), Gaps = 32/284 (11%)

Query: 93  GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLV 144
            G   P V  Y  LI   C+   +D        +  KG   + +        LC   +  
Sbjct: 85  AGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTS 144

Query: 145 EA-NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK---GFMPDVFSY 200
           +A + +L  M + G  P +F+Y  LL G C   +   A+ L   MA     G  PDV SY
Sbjct: 145 DAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 204

Query: 201 SVLINGYCKN--------FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           + ++NG+ K           +++AM V   M+ NG            V+P+  T N  + 
Sbjct: 205 NTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNG------------VMPDCMTYNSILH 252

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G C +G   E +     +     E  V  ++SL+   CK G    A ++F+ ++ + L  
Sbjct: 253 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 312

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D+  Y  L+    KEG++ +   L   M   G   D+ T+NTL+
Sbjct: 313 DIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 356


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 164/332 (49%), Gaps = 29/332 (8%)

Query: 15  IRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           + R Y+P  DV T+ ++I G C  G    A+ L KKM   GC+P+V T  T+I  L +  
Sbjct: 2   VARGYQP--DVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDR 59

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            +N  L +   M        GI  PN+F Y SLI GLC      +   +  EM    I  
Sbjct: 60  RVNEALDIFSYM-----KAKGI-SPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMP 113

Query: 134 N--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           N         + CK+  + EA  +L+ M + G+ P + TY+ L+NGY L  +V  A  LF
Sbjct: 114 NIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLF 173

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           D M  KG  PDVFSY++LINGYCK   + EA            K++FNEM    + P+  
Sbjct: 174 DVMITKGCKPDVFSYNILINGYCKAKRIGEA------------KQLFNEMIHQGLTPDIV 221

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           + N  IDGLC+ G + E  +LF  +  +     +  ++ L+ G CK G    A  LF  +
Sbjct: 222 SYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAM 281

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               L  ++V YNILI A+ K   +K+   L 
Sbjct: 282 QSTYLKPNMVMYNILIDAMCKSRNLKEARKLF 313



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 147/313 (46%), Gaps = 45/313 (14%)

Query: 50  MATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109
           M   G +P+V T  T+I GL + G       L ++M    G+ G   +P+V  Y ++ID 
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKM----GEAGC--QPDVVTYSTIIDS 54

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           LCKDR V++  D+F  MK K                           G++P IFTY  L+
Sbjct: 55  LCKDRRVNEALDIFSYMKAK---------------------------GISPNIFTYNSLI 87

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
            G C   +   A A+ + M     MP++ ++S+LIN +CK  NV EA  V + M   G  
Sbjct: 88  QGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMG-- 145

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                     V P   T +  ++G      V E  +LF  +    C+  V  +N LI G 
Sbjct: 146 ----------VEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGY 195

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK      A +LFN++  + L  D+V+YN LI  L + G++++ + L  +M  NG   D+
Sbjct: 196 CKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDL 255

Query: 350 DTFNTLMISFLQK 362
            T++ L+  F ++
Sbjct: 256 CTYSILLDGFCKQ 268



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 14/223 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF+ LI  FC EGN+ +A  ++K M   G  PNV T  +L+ G      +    KL 
Sbjct: 114 NIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLF 173

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL- 136
             M+          KP+VF Y  LI+G CK + + + K LF EM  +G     ++ NTL 
Sbjct: 174 DVMITKGC------KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLI 227

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +L EA+ L + M+  G  P + TY+ LL+G+C  G +  A  LF +M      
Sbjct: 228 DGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLK 287

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           P++  Y++LI+  CK+ N++EA  +  E+ + G +      KL
Sbjct: 288 PNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHWKL 330



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 13/177 (7%)

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +G+ PDV +Y+ +ING CK   + E +  +          +F +M      P+  T 
Sbjct: 1   MVARGYQPDVHTYTTIINGLCK---IGETVAAA---------GLFKKMGEAGCQPDVVTY 48

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           +  ID LCK+  V E +++F  ++       +  +NSLI+G C F  +  AS + N++  
Sbjct: 49  STIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMS 108

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF-LQKE 363
            N++ ++V +++LI+   KEG + +   +L +M E G   +V T+++LM  + LQ E
Sbjct: 109 LNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAE 165


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 182/368 (49%), Gaps = 38/368 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N LI  +   G + +A  +  +M   G  P+  T  T+I    R G +   +    +M+
Sbjct: 405 YNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMI 464

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-NANTL--------L 137
             MG      KP+   Y SLI G C    + + K+L  EM  +GI   NT+        L
Sbjct: 465 -AMG-----LKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSL 518

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ ++VEA  + +L++  G  P + T+  L++GY LVGK+  A  + D+M   G  PDV
Sbjct: 519 CKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDV 578

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------IFNE------MKLCNV 240
            +YS L++GYC+N  +++ + + REM+  G K            +FN+       K+C+ 
Sbjct: 579 VTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHE 638

Query: 241 VPET------FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           + E+       TC I + GLC+N    E + LF  L   N +  + I N++I    K   
Sbjct: 639 MIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRK 698

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A+ELF+ +S   LV +   Y ++I  L KEG +++ + +   ME++GCA      N 
Sbjct: 699 REEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNN 758

Query: 355 LMISFLQK 362
           ++   L+K
Sbjct: 759 IIRVLLEK 766



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 157/351 (44%), Gaps = 28/351 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMA--TFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           + +++++++K  C +   + A  L+  M   + GC PNV + +T+I G  R G ++    
Sbjct: 189 DTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACN 248

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
           L  EM+       G+  P+V  Y S ID LCK R +D+ + +  +M   G     +  N 
Sbjct: 249 LFHEMMQQ-----GVV-PDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNC 302

Query: 136 LLCKKT---KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           ++   +   +  E   +   M +RGL P IFT    ++  C  GK   A   FDSMA KG
Sbjct: 303 MIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKG 362

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+ +YSVL++GY     V + +N            +FN M+   +V +    NI ID
Sbjct: 363 HKPDLVTYSVLLHGYAAEGYVVDMLN------------LFNSMEGNGIVADHSVYNILID 410

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
              K G + E M +F  ++          + ++I    + G    A + FN++    L  
Sbjct: 411 AYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKP 470

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           D + YN LI      G + K   L+  M   G       F   +I+ L KE
Sbjct: 471 DTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKE 521



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 34/297 (11%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFME-MKDKGINANTL--------LCKKTKLVEAN 147
           K +V     L+  LC  +  D   ++ +  M + G+  +T+        LC+ ++   A 
Sbjct: 151 KTDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRAL 210

Query: 148 RLLELMMQR--GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
            LL  M+++  G +P + +Y  +++G+   G+V+ A  LF  M ++G +PDV +YS  I+
Sbjct: 211 DLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYID 270

Query: 206 GYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVP 242
             CK   +++A  V R+MI NGF+                        +F EM    ++P
Sbjct: 271 ALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMP 330

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           + FTCN ++  LCK+G   E  E F ++     +  +  ++ L+ G    G       LF
Sbjct: 331 DIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLF 390

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N +    +VAD   YNILI A GK G + +   +   M+E G   D  T+ T++ +F
Sbjct: 391 NSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAF 447



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 157/358 (43%), Gaps = 26/358 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDA-SQLVKKMATFGCRPNVTTCDTLITGL 69
           FG F++   +  + +  N L+K  C      DA + L+ +M   G  P+  +  T++  L
Sbjct: 142 FGRFLKTGLK-TDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSL 200

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
                    L L   MV   G       PNV  Y ++I G  ++  V +  +LF EM  +
Sbjct: 201 CEDSRSQRALDLLHTMVKKSGGC----SPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQ 256

Query: 130 GINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           G+  + +        LCK   + +A  +L  M+  G  P   TY  +++GY ++G+    
Sbjct: 257 GVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKET 316

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             +F  M R+G MPD+F+ +  ++  CK+   +EA      M   G K            
Sbjct: 317 AGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHK------------ 364

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+  T ++ + G    G+V++++ LF ++E +       ++N LI    K G+ + A  +
Sbjct: 365 PDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLI 424

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           F ++  + ++ D   Y  +I A  + G++         M   G   D   +N+L+  F
Sbjct: 425 FTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGF 482



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 166/402 (41%), Gaps = 72/402 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A++ F     R   P +  T+ ++I  F   G + DA     +M   G +P+    ++LI
Sbjct: 421 AMLIFTQMQERGVMP-DAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLI 479

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--- 123
            G    GN+    +L  EM++      GI +PN   + S+I+ LCK+  V + +D+F   
Sbjct: 480 QGFCMHGNLVKAKELISEMMSR-----GIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLV 534

Query: 124 --MEMKDKGINANTLLCKKT---KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             +  +   I  N+L+       K+ +A  +L+ M+  G+ P + TY+ LL+GYC  G++
Sbjct: 535 IHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRI 594

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
           +  + LF  M  KG  P   +Y ++++G   +     A  +  EM              I
Sbjct: 595 DDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGII 654

Query: 225 LNG-------------FKKI-------------------------------FNEMKLCNV 240
           L G             FKK+                               F+ +    +
Sbjct: 655 LGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGL 714

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           VP   T  + I  L K G V E   +F  +E S C     + N++IR   + G    A  
Sbjct: 715 VPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAGN 774

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
             +K+  K +  +    ++++    ++G+ +++   L +M +
Sbjct: 775 YLSKVDGKTISLEASTASLMLSLFSRKGKYREQIKSLPAMYQ 816



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 13/202 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + TY  L++  C   +  V  ALF    + G   DV   ++L+   C     ++A+NV
Sbjct: 117 PTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNV 176

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL--EISNCEL 277
                      + + M    V P+T + +  +  LC++      ++L  T+  +   C  
Sbjct: 177 -----------LLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSP 225

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  +N++I G  + G    A  LF+++  + +V DVV Y+  I AL K   + K   +L
Sbjct: 226 NVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVL 285

Query: 338 LSMEENGCALDVDTFNTLMISF 359
             M  NG   D  T+N ++  +
Sbjct: 286 RQMISNGFEPDKVTYNCMIHGY 307


>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Glycine max]
          Length = 875

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 188/394 (47%), Gaps = 57/394 (14%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           R  N V +N+L+  FC E    +A +LV++M   G  P+V T ++ I+ L R G +    
Sbjct: 215 RIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNSRISALCRAGKVMEAS 274

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC- 138
           ++ ++M   M    G+ +PNV  +  ++ G CK  ++   + L   MK  G N ++L C 
Sbjct: 275 RIFRDM--QMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVETMKKVG-NFDSLECY 331

Query: 139 --------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                   +  +L+EA  +L+ M+ +G+ P  +TY  +++G C    ++ A  L D M R
Sbjct: 332 NIWLMGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMR 391

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG----------------------- 227
            G  PD  +YS L++GYC    V EA +V  EMI NG                       
Sbjct: 392 NGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLE 451

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL-----------------FPTL 270
            +++  +M      P+T TCNI ++GLC+NG + +  E+                 F +L
Sbjct: 452 AEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASL 511

Query: 271 -----EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
                 +SNC      + +LI G CK G  E A + F ++  KNL  D V Y+  I +  
Sbjct: 512 INSIHNVSNCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFC 571

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           K+G+I     +L  ME NGC+  + T+N L++  
Sbjct: 572 KQGKISSAFRVLKDMERNGCSKTLQTYNALILGL 605



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 25/355 (7%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N VTFN ++KGFC  G + DA  LV+ M   G   ++   +  + GL R G +    
Sbjct: 290 RP-NVVTFNLMLKGFCKHGMMGDARGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEAR 348

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            +  EMV       GI +PN + Y  ++DGLC++ ++   + L   M   G+  +T+   
Sbjct: 349 LVLDEMV-----AKGI-EPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYS 402

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 C + K+ EA  +L  M++ G  P  +T   LL+     G+   A  +   M  K
Sbjct: 403 TLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEK 462

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG---------FKKIFNEMK-LCNVV 241
            + PD  + ++++NG C+N  +++A  +  EM  NG         F  + N +  + N +
Sbjct: 463 CYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCL 522

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+  T    I+GLCK G + E  + F  +   N       +++ I   CK G    A  +
Sbjct: 523 PDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRV 582

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +        +  YN LI  LG   QI +   L   M+E G + D+ T+N ++
Sbjct: 583 LKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNII 637



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 163/378 (43%), Gaps = 46/378 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A       IR   +P N  T N+L+     EG   +A ++++KM     +P+  TC
Sbjct: 413 KVFEAKSVLHEMIRNGCQP-NTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTC 471

Query: 63  DTLITGLRRTGNMNLTLKLHQEM-VNGMG--DFGGIYK-------------PNVFCYGSL 106
           + ++ GL R G ++   ++  EM  NG    D G  +              P+   Y +L
Sbjct: 472 NIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDGITYTTL 531

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGL 158
           I+GLCK   +++ K  F+EM  K +  +++         CK+ K+  A R+L+ M + G 
Sbjct: 532 INGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGC 591

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           +  + TY  L+ G     ++     L D M  KG  PD+ +Y+ +I   C+    ++A++
Sbjct: 592 SKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAIS 651

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC--- 275
           +  EM+  G            + P   +  I I    K+       ELF  + ++ C   
Sbjct: 652 LLHEMLDKG------------ISPNVSSFKILIKAFSKSSDFKVACELF-EVALNICGRK 698

Query: 276 -ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
             L+  +FN L+ G    G    A ELF     + L      Y  LI  L ++ ++   N
Sbjct: 699 EALYSLMFNELLAG----GQLSEAKELFEVSLDRYLTLKNFMYKDLIARLCQDERLADAN 754

Query: 335 YLLLSMEENGCALDVDTF 352
            LL  + + G   D  +F
Sbjct: 755 SLLYKLIDKGYGFDHASF 772



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 155/383 (40%), Gaps = 68/383 (17%)

Query: 29  SLIKGFCMEGNIRDASQLVKKM-ATF-GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           S+++     G++ DA    K + A F    P++   + L+    R         L+ +M+
Sbjct: 83  SMVRVLAQLGHVDDAITHFKSLRAQFPSLSPSLPLYNLLLRSTLRHHRPGFVSWLYSDML 142

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG---------------- 130
                      P  + +  LI  LC+ R  D    LF +M  KG                
Sbjct: 143 ------AARVAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLC 196

Query: 131 -----------------------INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFT 164
                                  +  NTL+   C++    EA RL+E M + G+ P + T
Sbjct: 197 RAGLVKQALELVNNNNSCRIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVT 256

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFM----PDVFSYSVLINGYCKNFNVEEAMNVS 220
           +   ++  C  GKV  A  +F  M     +    P+V ++++++ G+CK+  + +A  + 
Sbjct: 257 FNSRISALCRAGKVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLV 316

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTC-NIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             M     KK+ N         ++  C NI++ GL +NG +LE   +   +     E   
Sbjct: 317 ETM-----KKVGNF--------DSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNA 363

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             +N ++ G C+  +   A  L + +    +  D VAY+ L+H     G++ +   +L  
Sbjct: 364 YTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHE 423

Query: 340 MEENGCALDVDTFNTLMISFLQK 362
           M  NGC  +  T NTL+ S  ++
Sbjct: 424 MIRNGCQPNTYTCNTLLHSLWKE 446



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 97/247 (39%), Gaps = 49/247 (19%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP + VT+++ I  FC +G I  A +++K M   GC   + T + LI GL     +    
Sbjct: 557 RP-DSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIY 615

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            L  EM        GI  P++  Y ++I  LC+         L  EM DKGI+ N     
Sbjct: 616 GLKDEMKEK-----GI-SPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFK 669

Query: 137 ------------------------LCKKT---------------KLVEANRLLELMMQRG 157
                                   +C +                +L EA  L E+ + R 
Sbjct: 670 ILIKAFSKSSDFKVACELFEVALNICGRKEALYSLMFNELLAGGQLSEAKELFEVSLDRY 729

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           L    F Y  L+   C   ++  A +L   +  KG+  D  S+  +I+G  K  N  +A 
Sbjct: 730 LTLKNFMYKDLIARLCQDERLADANSLLYKLIDKGYGFDHASFMPVIDGLSKRGNKRQAD 789

Query: 218 NVSREMI 224
            +++ M+
Sbjct: 790 ELAKRMM 796


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 175/344 (50%), Gaps = 27/344 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLK 80
            ++V+ N ++ GFC EG + DA   +++M+   G  P+  T +TL+ GL + G++   ++
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE 316

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           +   M+         Y P+V+ Y S+I GLCK   V +  ++  +M  +  + NT+    
Sbjct: 317 IMDVMLQEG------YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNT 370

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK+ ++ EA  L  ++  +G+ P + T+  L+ G CL     VA+ LF+ M  KG
Sbjct: 371 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG 430

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD F+Y++LI+  C    ++EA+N+ ++M L+G  +               T N  ID
Sbjct: 431 CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR------------SVITYNTLID 478

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CK     E  E+F  +E+         +N+LI G CK    E A++L +++  +    
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D   YN L+    + G IKK   ++ +M  NGC  D+ T+ TL+
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 176/366 (48%), Gaps = 38/366 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LIK  C    +R A  +++ M ++G  P+  T  T++ G    G+++  L++ ++M
Sbjct: 191 TFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQM 250

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTL--- 136
           V    +FG  +  NV     ++ G CK+  V+   +   EM ++          NTL   
Sbjct: 251 V----EFGCSWS-NV-SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNG 304

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   +  A  ++++M+Q G +P ++TY  +++G C +G+V  A+ + D M  +   P+
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPN 364

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFN 233
             +Y+ LI+  CK   VEEA  ++R +   G                         ++F 
Sbjct: 365 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFE 424

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM+     P+ FT N+ ID LC  G + E + +   +E+S C   V  +N+LI G CK  
Sbjct: 425 EMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKAN 484

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A E+F+++    +  + V YN LI  L K  +++    L+  M   G   D  T+N
Sbjct: 485 KTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYN 544

Query: 354 TLMISF 359
           +L+  F
Sbjct: 545 SLLTHF 550



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 167/348 (47%), Gaps = 30/348 (8%)

Query: 15  IRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           ++  Y P  DV T+NS+I G C  G +++A +++ +M T  C PN  T +TLI+ L +  
Sbjct: 322 LQEGYDP--DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKEN 379

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            +    +L + + +      GI  P+V  + SLI GLC  R      +LF EM+ KG   
Sbjct: 380 QVEEATELARVLTSK-----GIL-PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEP 433

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +          LC K KL EA  +L+ M   G    + TY  L++G+C   K   A  +F
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIF 493

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           D M   G   +  +Y+ LI+G CK+  VE+A  +  +MI+ G K            P+ +
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK------------PDKY 541

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T N  +   C+ G + +  ++   +  + CE  +  + +LI G CK G  E+AS+L   +
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM-EENGCALDVDTF 352
             K +     AYN +I  L ++ +  +   L   M E+N    D  ++
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSY 649



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 137/282 (48%), Gaps = 28/282 (9%)

Query: 22  LNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           L DV TFNSLI+G C+  N R A +L ++M + GC P+  T + LI  L   G ++  L 
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           + ++M     +  G  + +V  Y +LIDG CK     + +++F EM+  G++ N++    
Sbjct: 457 MLKQM-----ELSGCAR-SVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  ++ +A +L++ M+  G  P  +TY  LL  +C  G +  A  +  +M   G
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+ +Y  LI+G CK   VE A  + R +          +MK  N+ P  +  N  I 
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSI----------QMKGINLTPHAY--NPVIQ 618

Query: 253 GLCKNGHVLEVMELF-PTLEISNCELFVEIFNSLIRGCCKFG 293
           GL +     E + LF   LE +        +  + RG C  G
Sbjct: 619 GLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGG 660



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 20/250 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI G C    + DA+QL+ +M   G +P+  T ++L+T   R G+    +K  
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGD----IKKA 559

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++V  M   G   +P++  YG+LI GLCK   V+    L   ++ KGIN          
Sbjct: 560 ADIVQAMTSNG--CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVI 617

Query: 137 --LCKKTKLVEA-NRLLELMMQRGLNPVIFTYTPLLNGYC-LVGKVNVAIALFDSMARKG 192
             L +K K  EA N   E++ Q    P   +Y  +  G C   G +  A+     +  KG
Sbjct: 618 QGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKG 677

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F+P+  S  +L  G     ++EE +     M++   K  F+E ++ ++V        F D
Sbjct: 678 FVPEFSSLYMLAEGLL-TLSMEETLVKLVNMVMQ--KARFSEEEV-SMVKGLLKIRKFQD 733

Query: 253 GLCKNGHVLE 262
            L   G VL+
Sbjct: 734 ALATLGGVLD 743


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 185/379 (48%), Gaps = 38/379 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R    P +   F+ LI  +  +G +  A  +  KM   G  PN  T   +I  L ++G 
Sbjct: 363 VRNGIHP-DHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           +   +   ++M+    D G    P    Y SLI GLC     ++ ++L +EM D+GI  N
Sbjct: 422 VEDAMLYFEQMI----DEG--LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 475

Query: 135 TLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           T+         CK+ +++E+ +L ELM++ G+ P + TY  L+NGYCL GK++ A+ L  
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---- 228
            M   G  P+  +YS LINGYCK   +E+A+ + +EM              IL G     
Sbjct: 536 GMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR 595

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                K+++  +       E  T NI + GLCKN    + +++F  L + + +L    FN
Sbjct: 596 RTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFN 655

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            +I    K G  + A +LF   S   LV +   Y ++   +  +G +++ + L LSME+N
Sbjct: 656 IMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN 715

Query: 344 GCALDVDTFNTLMISFLQK 362
           GC +D    N ++   LQ+
Sbjct: 716 GCTVDSGMLNFIVRELLQR 734



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 168/381 (44%), Gaps = 36/381 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ I++ +R ++ + F  L+KG C +    DA  +V ++M   GC PNV + + L+ G
Sbjct: 109 ALGNVIKKGFR-VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKG 167

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +   D GG   P+V  Y ++I+G  K+   D+    + EM D
Sbjct: 168 LCDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLD 224

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  + +        LCK   + +A  +L  M++ G+ P   TY  +L+GYC  G+   
Sbjct: 225 RGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE 284

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
           AI     M   G  PDV +YS+L++  CKN    EA  +   M   G K           
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344

Query: 231 -------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        + + M    + P+ +  +I I      G V + M +F  +       
Sbjct: 345 GYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNP 404

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               + ++I   CK G  E A   F ++  + L    + YN LIH L    + ++   L+
Sbjct: 405 NAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464

Query: 338 LSMEENGCALDVDTFNTLMIS 358
           L M + G  L+   FN+++ S
Sbjct: 465 LEMLDRGICLNTIFFNSIIDS 485



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 158/345 (45%), Gaps = 28/345 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++ ++I GF  EG+   A     +M   G  P+V T +++I  L +   M+  ++
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAME 252

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +   MV NG+        P+   Y S++ G C      +      +M+  G+  + +   
Sbjct: 253 VLNTMVKNGV-------MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYS 305

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  + +EA ++ + M +RGL P I TY  LL GY   G +     L D M R 
Sbjct: 306 LLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PD + +S+LI  Y     V++AM V            F++M+   + P   T    I
Sbjct: 366 GIHPDHYVFSILICAYANQGKVDQAMLV------------FSKMRQQGLNPNAVTYGAVI 413

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK+G V + M  F  +          ++NSLI G C    +E A EL  ++  + + 
Sbjct: 414 GILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC 473

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            + + +N +I +  KEG++ +   L   M   G   +V T+NTL+
Sbjct: 474 LNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 141/333 (42%), Gaps = 41/333 (12%)

Query: 49  KMATFGC---RPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVF 101
           +MA  G     P++ T   LI    R G ++L          G    G +    ++ +  
Sbjct: 74  RMARAGADEVTPDLCTYGILIGCCCRAGRLDL----------GFAALGNVIKKGFRVDAI 123

Query: 102 CYGSLIDGLCKDRLVDQTKDLFME-MKDKGINANTL--------LCKKTKLVEANRLLEL 152
            +  L+ GLC D+      D+ +  M + G   N          LC + +  EA  LL +
Sbjct: 124 AFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHM 183

Query: 153 MMQR---GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           M      G  P + +YT ++NG+   G  + A + +  M  +G +PDV +Y+ +I   CK
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              +++AM V   M+ NG            V+P+  T N  + G C +G   E +     
Sbjct: 244 AQAMDKAMEVLNTMVKNG------------VMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     E  V  ++ L+   CK G    A ++F+ ++ + L  ++  Y  L+     +G 
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + + + LL  M  NG   D   F+ L+ ++  +
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYANQ 384



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 43/206 (20%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A   ++ +KGF  D  +++ L+ G C +    +AM
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           ++           +   M     +P  F+ NI + GLC      E +EL   +       
Sbjct: 143 DI-----------VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD---- 187

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
                    RG                        DVV+Y  +I+   KEG   K     
Sbjct: 188 ---------RG-------------------GGSPPDVVSYTTVINGFFKEGDSDKAYSTY 219

Query: 338 LSMEENGCALDVDTFNTLMISFLQKE 363
             M + G   DV T+N+++ +  + +
Sbjct: 220 HEMLDRGILPDVVTYNSIIAALCKAQ 245


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 183/400 (45%), Gaps = 62/400 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A     + ++R Y P N +T N+LIKG C  G I+ A     ++   G + N  +  TLI
Sbjct: 117 AFSVLANILKRGYHP-NAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLI 175

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL +TG      +L +++       G   KP+V  Y ++I  LCK++L+    DL+ EM
Sbjct: 176 NGLCKTGETKAVARLLRKLE------GHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEM 229

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             KGI+ N +                                           L K+ K+
Sbjct: 230 IVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKM 289

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
             A  +L +MM+  + P + TY  L++GY  + KV  A  +F SMA+ G  P+V +Y+ +
Sbjct: 290 KAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTM 349

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I+G CK   V+EAM+            +F EMK  N++P+  T    IDGLCKN H+   
Sbjct: 350 IDGLCKEKMVDEAMS------------LFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERA 397

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           + L   ++    +  V  +  L+   CK G  E A E F +L  K    +V  YN++I+ 
Sbjct: 398 IALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMING 457

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           L K     +   L   ME  GC  D  TF T++ +  +K+
Sbjct: 458 LCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKD 497



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 172/371 (46%), Gaps = 51/371 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ SLI G C   ++  A  L KKM   G +P+V +   L+  L + G +    +  Q 
Sbjct: 379 VTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQR 438

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLC 138
           + V G       Y  NV  Y  +I+GLCK  L  +  DL  +M+ KG     I   T++C
Sbjct: 439 LLVKG-------YHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIIC 491

Query: 139 --------------------------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
                                     +K +L EA  +L +M +  + P + TY  L++GY
Sbjct: 492 ALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGY 551

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
            LV ++  A  +F SMA+ G  P+V  Y+++I+G CK   V+EAM+            +F
Sbjct: 552 FLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMS------------LF 599

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            EMK  N+ P   T    ID LCKN H+   + L   ++    +  V  +  L+ G CK 
Sbjct: 600 EEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKS 659

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  E A E+F +L  K    +V  Y  +I+ L K G   +   L   ME+ GC  D  TF
Sbjct: 660 GRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTF 719

Query: 353 NTLMISFLQKE 363
           + ++ +  +K+
Sbjct: 720 DIIIWALFEKD 730



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 145/348 (41%), Gaps = 72/348 (20%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T+N +I G C      +A  L  KM   GC P+  T  T+I  L      +   K+
Sbjct: 446 LNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKI 505

Query: 82  HQEMV-NGMGDFGGI----------------YKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
            +EM+  G+ +   +                 KP+V  YG+L+DG      +   K +F 
Sbjct: 506 LREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFY 565

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
            M   G+  N          LCKK  + EA  L E M  + + P I TYT L++  C   
Sbjct: 566 SMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNH 625

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
            +  AIAL   M   G  PDV+SY++L++G CK+  +E            G K+IF  + 
Sbjct: 626 HLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLE------------GAKEIFQRL- 672

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
                            L K  H+             N +++  + N L    CK G+F+
Sbjct: 673 -----------------LVKGYHL-------------NVQVYTAMINEL----CKAGLFD 698

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            A +L  K+  K  + D V ++I+I AL ++ +  K   +L  M   G
Sbjct: 699 EALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARG 746



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 123/267 (46%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TL------LCKKTKLVEANRL 149
           P  F +  ++  L  ++       LF + +  G   +  TL       C  T +  A  +
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +++RG +P   T   L+ G C  G++  A+   D +  +GF  +  SY  LING CK
Sbjct: 121 LANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCK 180

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                E   V+R         +  +++  +V P+    N  I  LCKN  + +  +L+  
Sbjct: 181 T---GETKAVAR---------LLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSE 228

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           + +      V  +N+L+ G C  G  + A  L N++  KN+  DV  +N LI ALGKEG+
Sbjct: 229 MIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGK 288

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           +K    +L  M +     DV T+N+L+
Sbjct: 289 MKAAKIVLAVMMKACIKPDVVTYNSLI 315



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 110/232 (47%), Gaps = 15/232 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A +      + C +P + VT+ +L+ G+ +   ++ A  +   MA  G  PNV     +I
Sbjct: 525 AKIVLAVMTKACIKP-DVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMI 583

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL +   ++  + L +EM +       ++ PN+  Y SLID LCK+  +++   L  EM
Sbjct: 584 DGLCKKKTVDEAMSLFEEMKHK-----NMF-PNIVTYTSLIDALCKNHHLERAIALLKEM 637

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K+ GI  +          LCK  +L  A  + + ++ +G +  +  YT ++N  C  G  
Sbjct: 638 KEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLF 697

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
           + A+ L   M  KG MPD  ++ ++I    +    ++A  +  EMI  G  K
Sbjct: 698 DEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGLMK 749



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 12/200 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P  F +  +L+           I+LF      G  PD+ + ++L+N +C   ++  A +V
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
              ++  G+             P   T N  I GLC  G + + +     +     +L  
Sbjct: 121 LANILKRGYH------------PNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQ 168

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + +LI G CK G  +  + L  KL   ++  DVV YN +IH+L K   +     L   
Sbjct: 169 VSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSE 228

Query: 340 MEENGCALDVDTFNTLMISF 359
           M   G + +V T+N L+  F
Sbjct: 229 MIVKGISPNVVTYNALVYGF 248



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 60/163 (36%), Gaps = 35/163 (21%)

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN---------------CE 276
           F+ M L    P TF  N  +  L  N H   V+ LF   E +                C 
Sbjct: 51  FDRMLLMRPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCH 110

Query: 277 LFVEIF--------------------NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           L    F                    N+LI+G C  G  + A    +++  +    + V+
Sbjct: 111 LTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVS 170

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y  LI+ L K G+ K    LL  +E +    DV  +NT++ S 
Sbjct: 171 YRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSL 213


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 179/353 (50%), Gaps = 37/353 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V ++++I G C +G   D+  L  +M   G  PN+ T + +I G   +G  +   +L 
Sbjct: 252 NVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLL 311

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QEM+           PNV  Y +LI+   K+    +  +L+ EM  +GI  NT+      
Sbjct: 312 QEMLERK------ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMI 365

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+ +L  A  +  LM  +G +P +FT+T L++GYC   +++  + L   M R+G +
Sbjct: 366 DGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLV 425

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +  +Y+ LI+G+C   ++  A+++S++MI +G            V P+  TCN  +DGL
Sbjct: 426 ANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG------------VCPDIVTCNTLLDGL 473

Query: 255 CKNGHVLEVMELFPTLEISNCEL-----------FVEIFNSLIRGCCKFGIFEIASELFN 303
           C NG + + +E+F  ++ S  +L            V  +N LI G    G F  A EL+ 
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYE 533

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++  + +V D + Y+ +I  L K+ ++ +   + +SM     + +V TFNTL+
Sbjct: 534 EMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 586



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 177/383 (46%), Gaps = 48/383 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I GFC+ G    A +L+++M      PNV T + LI    + G      +L+
Sbjct: 287 NIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELY 346

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL 137
            EM+       GI  PN   Y S+IDG CK   +D  +D+F  M  KG + +     TL+
Sbjct: 347 DEMLP-----RGII-PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 400

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C   ++ +   LL  M +RGL     TY  L++G+CLVG +N A+ L   M   G  
Sbjct: 401 DGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC 460

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM-----------ILNGF--------------- 228
           PD+ + + L++G C N  +++A+ + + M             NG                
Sbjct: 461 PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLI 520

Query: 229 --------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                   ++++ EM    +VP+T T +  IDGLCK   + E  ++F ++   +    V 
Sbjct: 521 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVV 580

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            FN+LI G CK G  +   ELF ++  + +VAD + Y  LI+   K G I     +   M
Sbjct: 581 TFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEM 640

Query: 341 EENGCALDVDTFNTLMISFLQKE 363
             +G   D  T   ++  F  KE
Sbjct: 641 ISSGVYPDTITIRNMLTGFWSKE 663



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 149/355 (41%), Gaps = 75/355 (21%)

Query: 40  IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN------------ 87
           + DA  L   M      P+V   + L+  + R    +L + L+Q+M              
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 88  -------------GMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
                         +  FG + K    P+V  + +L+ GLC D  V +  DLF +     
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQ----- 176

Query: 131 INANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 +C+                    P + T+T L+NG C  G+V  A+AL D M  
Sbjct: 177 ------ICR--------------------PDVLTFTTLMNGLCREGRVVEAVALLDRMVE 210

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  PD  +Y   ++G CK  +   A+N+ R+M            ++ ++ P     +  
Sbjct: 211 NGLQPDQITYGTFVDGMCKMGDTVSALNLLRKM-----------EEISHIKPNVVIYSAI 259

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCK 308
           IDGLCK+G   +   LF  +E+ +  +F  I  +N +I G C  G +  A  L  ++  +
Sbjct: 260 IDGLCKDGRHSDSHNLF--IEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLER 317

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +  +VV YN LI+A  KEG+  +   L   M   G   +  T+N+++  F +++
Sbjct: 318 KISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 372



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 50/244 (20%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI GFC+ G++  A  L ++M + G  P++ TC+TL+ GL   G +   L++ 
Sbjct: 427 NTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 486

Query: 83  QEMVNGMGD------FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           + M     D      F G+ +P+V  Y  LI GL  +    + ++L+ EM  +GI  +T+
Sbjct: 487 KAMQKSKMDLDASHPFNGV-EPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTI 545

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV---------- 178
                   LCK+++L EA ++   M  +  +P + T+  L+NGYC  G+V          
Sbjct: 546 TYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM 605

Query: 179 -------------------------NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
                                    N A+ +F  M   G  PD  +   ++ G+     +
Sbjct: 606 GRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEEL 665

Query: 214 EEAM 217
           E A+
Sbjct: 666 ERAV 669


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 179/353 (50%), Gaps = 37/353 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V ++++I G C +G   D+  L  +M   G  PN+ T + +I G   +G  +   +L 
Sbjct: 252 NVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLL 311

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QEM+           PNV  Y +LI+   K+    +  +L+ EM  +GI  NT+      
Sbjct: 312 QEMLERK------ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMI 365

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+ +L  A  +  LM  +G +P +FT+T L++GYC   +++  + L   M R+G +
Sbjct: 366 DGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLV 425

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +  +Y+ LI+G+C   ++  A+++S++MI +G            V P+  TCN  +DGL
Sbjct: 426 ANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG------------VCPDIVTCNTLLDGL 473

Query: 255 CKNGHVLEVMELFPTLEISNCEL-----------FVEIFNSLIRGCCKFGIFEIASELFN 303
           C NG + + +E+F  ++ S  +L            V  +N LI G    G F  A EL+ 
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYE 533

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++  + +V D + Y+ +I  L K+ ++ +   + +SM     + +V TFNTL+
Sbjct: 534 EMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 586



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 177/383 (46%), Gaps = 48/383 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I GFC+ G    A +L+++M      PNV T + LI    + G      +L+
Sbjct: 287 NIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELY 346

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL 137
            EM+       GI  PN   Y S+IDG CK   +D  +D+F  M  KG + +     TL+
Sbjct: 347 DEMLP-----RGII-PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 400

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C   ++ +   LL  M +RGL     TY  L++G+CLVG +N A+ L   M   G  
Sbjct: 401 DGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC 460

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM-----------ILNGF--------------- 228
           PD+ + + L++G C N  +++A+ + + M             NG                
Sbjct: 461 PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLI 520

Query: 229 --------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                   ++++ EM    +VP+T T +  IDGLCK   + E  ++F ++   +    V 
Sbjct: 521 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVV 580

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            FN+LI G CK G  +   ELF ++  + +VAD + Y  LI+   K G I     +   M
Sbjct: 581 TFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEM 640

Query: 341 EENGCALDVDTFNTLMISFLQKE 363
             +G   D  T   ++  F  KE
Sbjct: 641 ISSGVYPDTITIRNMLTGFWSKE 663



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 132/265 (49%), Gaps = 27/265 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI GFC+ G++  A  L ++M + G  P++ TC+TL+ GL   G +   L++ 
Sbjct: 427 NTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 486

Query: 83  QEMVNGMGD------FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           + M     D      F G+ +P+V  Y  LI GL  +    + ++L+ EM  +GI  +T+
Sbjct: 487 KAMQKSKMDLDASHPFNGV-EPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTI 545

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LCK+++L EA ++   M  +  +P + T+  L+NGYC  G+V+  + LF  M
Sbjct: 546 TYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM 605

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            R+G + D   Y  LI G+ K  N+            NG   IF EM    V P+T T  
Sbjct: 606 GRRGIVADAIIYITLIYGFRKVGNI------------NGALDIFQEMISSGVYPDTITIR 653

Query: 249 IFIDGLCKNGHVLEVMELFPTLEIS 273
             + G      +   + +   L++S
Sbjct: 654 NMLTGFWSKEELERAVAMLEDLQMS 678



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 149/355 (41%), Gaps = 75/355 (21%)

Query: 40  IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN------------ 87
           + DA  L   M      P+V   + L+  + R    +L + L+Q+M              
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 88  -------------GMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
                         +  FG + K    P+V  + +L+ GLC D  V +  DLF +     
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQ----- 176

Query: 131 INANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 +C+                    P + T+T L+NG C  G+V  A+AL D M  
Sbjct: 177 ------ICR--------------------PDVLTFTTLMNGLCREGRVVEAVALLDRMVE 210

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  PD  +Y   ++G CK  +   A+N+ R+M            ++ ++ P     +  
Sbjct: 211 NGLQPDQITYGTFVDGMCKMGDTVSALNLLRKM-----------EEISHIKPNVVIYSAI 259

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCK 308
           IDGLCK+G   +   LF  +E+ +  +F  I  +N +I G C  G +  A  L  ++  +
Sbjct: 260 IDGLCKDGRHSDSHNLF--IEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLER 317

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +  +VV YN LI+A  KEG+  +   L   M   G   +  T+N+++  F +++
Sbjct: 318 KISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 372


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 175/349 (50%), Gaps = 34/349 (9%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
               ++R Y P + VT N+LIKG C++G ++ A     K+   G + N     TLI G+ 
Sbjct: 116 LAKILKRGYPP-STVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGVC 174

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G+    +KL +++       G + KP+V  Y ++ID LCK +LV +   LF EM  KG
Sbjct: 175 KIGDTRAAIKLLKKID------GRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKG 228

Query: 131 INA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA- 181
           I+A     NTL+   C   KL EA  LL +M+ + +NP ++TYT L++  C  GKV  A 
Sbjct: 229 ISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAK 288

Query: 182 ------IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
                   L D M  +G   DV +YS LI+G CKN +++ A+             +FN+M
Sbjct: 289 RRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAI------------ALFNKM 336

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           K   + P  FT  I +DGL K G + +  E+F  L      L V  +N +I G CK G+ 
Sbjct: 337 KDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLL 396

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           E A  + +K+     + +   +  +I AL K+ +  K   LL  M   G
Sbjct: 397 EEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 445



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 118/276 (42%), Gaps = 28/276 (10%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           + P +  +  ++D   K +    T  L   ++ KGI  +           C   ++    
Sbjct: 55  HTPPIIQFNKILDSFAKMKHY-STVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGF 113

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L  +++RG  P   T   L+ G CL G+V  A+   D +  +GF  +   Y  LING 
Sbjct: 114 SVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGV 173

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK  +   A+ +         KKI   +      P+    +  ID LCK   V E   LF
Sbjct: 174 CKIGDTRAAIKL--------LKKIDGRL----TKPDVVMYSTIIDALCKYQLVSEAYGLF 221

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             + +      V  +N+LI G C  G  + A  L N +  K +  DV  Y IL+ AL KE
Sbjct: 222 SEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKE 281

Query: 328 GQIKKENY-------LLLSMEENGCALDVDTFNTLM 356
           G++K+          L+  M + G   DV T+++L+
Sbjct: 282 GKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLI 317


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 168/363 (46%), Gaps = 41/363 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN  I G C    I DA  +   M   G  PN  T + L++GL   G M+    L++ M
Sbjct: 52  TFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERM 111

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           +         Y P+V  Y +L+ G CK   +D+   +F     +G     +  N L+   
Sbjct: 112 IKAG------YSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGF 165

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  KL EA R+L+ M+   L P + TY  L+NG C  G+V+ A  L   +  KGF P+V
Sbjct: 166 CKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARML---IVDKGFSPNV 222

Query: 198 FSYSVLINGYCKNFN-VEEAMNVSREMILNGFK-----------------------KIFN 233
            +YS LI+G C+    +E A  +  +M+LNG K                       K+F 
Sbjct: 223 ITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFG 282

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            +      PE  T NI IDGL K   V E  ELF  L     E     +   I G CK G
Sbjct: 283 SVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAG 342

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A  +   +  K  V DVV++N +I+ L KE ++ +   LL  ME  GC+ +  +FN
Sbjct: 343 RVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFN 402

Query: 354 TLM 356
           TL+
Sbjct: 403 TLI 405



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 171/345 (49%), Gaps = 35/345 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL-RRTGNMNLTLKLHQ 83
           VT+NSL+ G C  G + +A  L+      G  PNV T  TLI+GL R    +    +L +
Sbjct: 191 VTYNSLVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRRLESARQLLE 247

Query: 84  EMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +MV NG        KP++  Y +LI GL +++ V +   LF  +  +G            
Sbjct: 248 KMVLNGC-------KPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILI 300

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K+ ++ EA  L   +++ GL P   TYT  ++G C  G+V  A+ +   M  KG +
Sbjct: 301 DGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCV 360

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV S++ +ING CK   V+EA     E++L+G      E K C+  P   + N  I G 
Sbjct: 361 PDVVSHNAVINGLCKEKRVDEA-----EVLLSGM-----EAKGCS--PNAISFNTLICGQ 408

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF---GIFEIASELFNKLSCKNLV 311
           C+ G   + M  F  +     +  V  +N L+ G CK    G  + A  LF+ +  K  V
Sbjct: 409 CRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV 468

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            DVV Y+ LI  LGK G++     LL +ME  GC  +V T+N+L+
Sbjct: 469 PDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLI 513



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 173/357 (48%), Gaps = 38/357 (10%)

Query: 23  NDVTFNSLIKGFCME-GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           N +T+++LI G C E   +  A QL++KM   GC+P++ + + LI GL R   ++  LKL
Sbjct: 221 NVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKL 280

Query: 82  HQEMVNGMGDFGGI----YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
                     FG +    Y+P V  Y  LIDGL K+  V++  +LF  +   G+  + + 
Sbjct: 281 ----------FGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAIT 330

Query: 137 -------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                  LCK  ++ +A  +L+ M ++G  P + ++  ++NG C   +V+ A  L   M 
Sbjct: 331 YTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGME 390

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
            KG  P+  S++ LI G C+    ++AM   +EM+  G K            P   T NI
Sbjct: 391 AKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVK------------PTVVTYNI 438

Query: 250 FIDGLCK---NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            +DGLCK    G + E + LF  +        V  +++LI G  K G  + A  L   + 
Sbjct: 439 LVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAME 498

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            K  + +V  YN LI  L    ++ +   L ++M E GC  D  T+ T++ +  ++E
Sbjct: 499 AKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQE 555



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 187/394 (47%), Gaps = 54/394 (13%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            S++  A   F    +  + P N +T+N+L+ G C  G + DA  L ++M   G  P+V 
Sbjct: 63  ASRIGDAQTVFDGMRKHGFWP-NRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVV 121

Query: 61  TCDTLITGLRRTGNMNLTLKL---------------HQEMVNG------MGDFGGIYK-- 97
           T +TL+ G  + G ++  LK+               +  ++NG      + +   I +  
Sbjct: 122 TYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRM 181

Query: 98  ------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKL 143
                 P+V  Y SL++GLCK+  VD+ + L +   DKG + N +        LC++ + 
Sbjct: 182 VSESLVPDVVTYNSLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLCRELRR 238

Query: 144 VEANR-LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           +E+ R LLE M+  G  P I +Y  L++G      V+ A+ LF S+ R+G+ P+V +Y++
Sbjct: 239 LESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNI 298

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI+G  K   V EA  +   ++ +G +            P+  T  +FIDGLCK G V +
Sbjct: 299 LIDGLLKEDRVNEAFELFSGLVKHGLE------------PDAITYTVFIDGLCKAGRVED 346

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            + +   ++   C   V   N++I G CK    + A  L + +  K    + +++N LI 
Sbjct: 347 ALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLIC 406

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              + G+ KK       M + G    V T+N L+
Sbjct: 407 GQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILV 440



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 158/317 (49%), Gaps = 33/317 (10%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLK-LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL 115
           P+  T   L+  L ++G +    + + Q +V G+ D   I   N++     I GLC+   
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCD---ISTFNIY-----ISGLCRASR 65

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           +   + +F  M+  G   N +        LC   ++ +A  L E M++ G +P + TY  
Sbjct: 66  IGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNT 125

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           LL+G+C VGK++ A+ +FD   ++GF+PDV +Y+ LING+CK   ++EA  + + M+   
Sbjct: 126 LLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE- 184

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                      ++VP+  T N  ++GLCKNG V E   L      S     V  +++LI 
Sbjct: 185 -----------SLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSP---NVITYSTLIS 230

Query: 288 GCCK-FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
           G C+     E A +L  K+       D+V+YN LIH L +E  + +   L  S+   G  
Sbjct: 231 GLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYE 290

Query: 347 LDVDTFNTLMISFLQKE 363
            +V T+N L+   L+++
Sbjct: 291 PEVPTYNILIDGLLKED 307



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 152/308 (49%), Gaps = 30/308 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  FGS +R+ Y P    T+N LI G   E  + +A +L   +   G  P+  T    I
Sbjct: 277 ALKLFGSVLRQGYEP-EVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 335

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G +   L     M+  M + G +  P+V  + ++I+GLCK++ VD+ + L   M
Sbjct: 336 DGLCKAGRVEDALL----MLKDMDEKGCV--PDVVSHNAVINGLCKEKRVDEAEVLLSGM 389

Query: 127 KDKG-----INANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV--- 175
           + KG     I+ NTL+C   +  K  +A    + M++RG+ P + TY  L++G C     
Sbjct: 390 EAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQE 449

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G++  AI LFD+M  KG +PDV +YS LI+G  K   +++A            +++   M
Sbjct: 450 GRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDA------------RRLLGAM 497

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           +    +P  +T N  I GLC    V E +ELF  +    C      + ++I   CK  + 
Sbjct: 498 EAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMV 557

Query: 296 EIASELFN 303
           + A  LF+
Sbjct: 558 DKALALFD 565



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 123/254 (48%), Gaps = 29/254 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+ N++I G C E  + +A  L+  M   GC PN  + +TLI G  R G     +   +E
Sbjct: 364 VSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKE 423

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD---LFMEMKDKGINANTL----- 136
           M+       G+ KP V  Y  L+DGLCK R   + K+   LF  M +KG   + +     
Sbjct: 424 MLKR-----GV-KPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSAL 477

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L K  KL +A RLL  M  +G  P ++TY  L++G C + KV+ A+ LF +M  KG 
Sbjct: 478 IDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGC 537

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PD  +Y  +I+  CK   V++A+             +F+      VVP +      IDG
Sbjct: 538 VPDTITYGTIISALCKQEMVDKAL------------ALFDGSLEAGVVPTSGMYFSLIDG 585

Query: 254 LCKNGHVLEVMELF 267
           LC    V E ++L 
Sbjct: 586 LCAVARVDEALKLL 599


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 126/406 (31%), Positives = 195/406 (48%), Gaps = 69/406 (16%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKM-ATFGCRPNVTT 61
           KV  AL      IR+ +  L+ V++ +LI G C  G  R A QL++K+      RP+V  
Sbjct: 138 KVKEALNFHDHVIRKRFH-LDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIM 196

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
              +I    +   +     L+ EM+        IY PNV  + SLI G C   +V Q K+
Sbjct: 197 YTAIIDSFCKDKLVIDAYDLYSEMI-----VKKIY-PNVVTFNSLIYGFC---IVGQLKE 247

Query: 122 ---LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
              L  EM    +N N          LCK+ ++ +A  +L +M+++G+ P + TYT L++
Sbjct: 248 AVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMD 307

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
           GY LV +VN A  +F++++ +G  P+V SYSV+ING CKN  V+EA+            K
Sbjct: 308 GYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAV------------K 355

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF--------PTLEISNCELF---- 278
           +F EM L N+ P T T +  IDGLCK+G + +V +L         P   I+   L     
Sbjct: 356 LFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLC 415

Query: 279 -----------------------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
                                  +  + +L+ G CK G  + A  ++  L CK    ++ 
Sbjct: 416 KNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIR 475

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            Y ++I+ L KEG   +   LL  ME+NGC  D  T+ TL+ +  +
Sbjct: 476 MYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFK 521



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 171/353 (48%), Gaps = 29/353 (8%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V+ A   +   I +   P N VTFNSLI GFC+ G +++A  L+ +M+     PNV T +
Sbjct: 210 VIDAYDLYSEMIVKKIYP-NVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFN 268

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            LI GL + G +     +   M+       G+ +PNV  Y SL+DG    + V++ K +F
Sbjct: 269 ILIDGLCKEGEVKKATSVLSVMIKQ-----GV-EPNVVTYTSLMDGYFLVKEVNKAKHVF 322

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
             +  +G+  N          LCK   + EA +L + M  + + P   TY+ L++G C  
Sbjct: 323 NTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKS 382

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G+++    L D +  +G   ++ +Y+ L+NG CKN  V++A+             +  +M
Sbjct: 383 GRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAI------------ALLTKM 430

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           K   + P+  T    +DGLCKNG + +   ++  L      L + ++  +I G CK G F
Sbjct: 431 KDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFF 490

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM--EENGCA 346
           + A  L +++     + D V Y  LI AL K  +  K   LL  M   E+ C+
Sbjct: 491 DEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMIARESDCS 543



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 127/277 (45%), Gaps = 20/277 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKTKLVEAN--- 147
           + P +F +  ++  L K            +M+ KGI       N L+   + L + N   
Sbjct: 49  HTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAF 108

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            ++  +++ G  P   T   LL G CL GKV  A+   D + RK F  D  SY  LING 
Sbjct: 109 SMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGL 168

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK+     A+ + R++             L  V P+       ID  CK+  V++  +L+
Sbjct: 169 CKSGETRAALQLLRKI-----------EGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLY 217

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             + +      V  FNSLI G C  G  + A  L N++S  N+  +V  +NILI  L KE
Sbjct: 218 SEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKE 277

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMIS-FLQKE 363
           G++KK   +L  M + G   +V T+ +LM   FL KE
Sbjct: 278 GEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKE 314



 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PLN   +  +I G C EG   +A  L+ +M   GC P+  T +TLI+ L +       +K
Sbjct: 471 PLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVK 530

Query: 81  LHQEMVNGMGDFGG 94
           L +EM+    D  G
Sbjct: 531 LLREMIARESDCSG 544


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 198/427 (46%), Gaps = 73/427 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++  A   F   ++  Y+P + +T+ +LI+G C+ G ++++     ++ + G + +  + 
Sbjct: 99  QINSAFSVFAKILKLGYQP-DIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSY 157

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            TLI GL + G     L+L +++       G I +P+V  Y ++IDGLCKD+LV    DL
Sbjct: 158 GTLINGLCKIGQTGPALRLLRKIE------GEICRPDVVMYNTIIDGLCKDKLVRDAFDL 211

Query: 123 FMEMKDKGINANTL-------------------------------------------LCK 139
           + EM +K +  N +                                           LCK
Sbjct: 212 YCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCK 271

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           + K+ EA  L+ +MM+ G+ P +FTY  L++GY LV +   A  +F+ MA+ G   DV S
Sbjct: 272 EGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHS 331

Query: 200 YSVLINGYCKNFNVEEAM---------NVSREMI--------------LNGFKKIFNEMK 236
           YSV+I+G  K   ++EAM         NV  +++              +N   K  +EM 
Sbjct: 332 YSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMH 391

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
                P   T    ID LCK+  V + + L   ++    +  +  +N L+ G CK G   
Sbjct: 392 DRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLT 451

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A ++F  L  K    DVV Y+I+I+ L KE    +   LL  ME+ GC  D   + T++
Sbjct: 452 DAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETII 511

Query: 357 ISFLQKE 363
            +F +K+
Sbjct: 512 NAFFEKD 518



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 131/282 (46%), Gaps = 35/282 (12%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P +  +G ++  L K +       LF  M+  GI +N +         C   ++  A  +
Sbjct: 47  PPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSV 106

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              +++ G  P I TYT L+ G CL G+V  ++   D +  +G   D  SY  LING CK
Sbjct: 107 FAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCK 166

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                 A+ + R++          E ++C   P+    N  IDGLCK+  V +  +L+  
Sbjct: 167 IGQTGPALRLLRKI----------EGEICR--PDVVMYNTIIDGLCKDKLVRDAFDLY-- 212

Query: 270 LEISNCELF-------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
                CE+F       V  + SLI G C  G  + A  L N++  KN+  +V  +N L+ 
Sbjct: 213 -----CEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVD 267

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS-FLQKE 363
            L KEG++++   L+  M + G   DV T+N LM   FL KE
Sbjct: 268 GLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKE 309



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 14/207 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +++ +I G      + +A  L + M      P+V    +LI GL ++G +N  LK     
Sbjct: 331 SYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKY---- 386

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           V+ M D G    PNV  Y SLID LCK   VD+   L  ++KD+GI AN          L
Sbjct: 387 VDEMHDRG--QPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGL 444

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  +L +A ++ + ++ +G N  + TY+ ++NG C     + A+ L   M  KG +PD 
Sbjct: 445 CKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDA 504

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMI 224
            +Y  +IN + +    ++A  + REMI
Sbjct: 505 IAYETIINAFFEKDMNDKAEKLLREMI 531



 Score = 38.1 bits (87), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 48/132 (36%)

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
           LN     FN M      P        +  L K  H   V+ LF  +E+   +      N 
Sbjct: 30  LNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNI 89

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI   C       A  +F K+       D++ Y  LI  L   GQ+K+       +   G
Sbjct: 90  LINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQG 149

Query: 345 CALDVDTFNTLM 356
             LD  ++ TL+
Sbjct: 150 IKLDHVSYGTLI 161


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 180/367 (49%), Gaps = 38/367 (10%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N LI      G + +A  +  +M   G RPNV T  TLI+   R G +   ++   +M++
Sbjct: 411 NILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMIS 470

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---------LC 138
                 GI +PN   Y SLI G C    + + K+   EM  KG++   +         LC
Sbjct: 471 I-----GI-EPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLC 524

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
            + ++++A  +  L++  G  P I T+  L++GYCLVGK+  A  + D+M   G  PDV 
Sbjct: 525 IEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVV 584

Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEM 235
           + + L++GYCK+  +++ + + REM              +L+G          KK+F+EM
Sbjct: 585 TNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEM 644

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                  +  T  I + GLC+N    E + LF  L   +C+  + I N++I    K    
Sbjct: 645 IDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRR 704

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           E A++LF  +S   LV +V  Y ++I  L KEG +++ + +  SME++GCA      N +
Sbjct: 705 EEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDI 764

Query: 356 MISFLQK 362
           +   LQK
Sbjct: 765 IRMLLQK 771



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 170/380 (44%), Gaps = 64/380 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGLRRTGNMNLTLK 80
           + +++N++IK  C +   ++A  +V++MA  G  C P+V + +T+I G  + G ++    
Sbjct: 194 DAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACN 253

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------ 134
           L  EMV       G+  P+V  Y S++D LCK R +D+ + +  +M DKG+  +      
Sbjct: 254 LFNEMVQK-----GVV-PDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNA 307

Query: 135 -------------------------------------TLLCKKTKLVEANRLLELMMQRG 157
                                                + LCK  +  +A  + + M  +G
Sbjct: 308 IIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKG 367

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
             P I +Y+ LL+GY   G+      LF SMA KG + +    ++LI+ + K   ++EAM
Sbjct: 368 HMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAM 427

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            V            F EM+   V P   T +  I   C+ G + + ME F  +     E 
Sbjct: 428 LV------------FTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEP 475

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL-VADVVAYNILIHALGKEGQIKKENYL 336
              +++SLI G C  G    A E  +++  K L   ++V ++ +IH+L  EG++     +
Sbjct: 476 NTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDV 535

Query: 337 LLSMEENGCALDVDTFNTLM 356
              +   G    + TFN+L+
Sbjct: 536 FNLVIHIGDRPTIVTFNSLI 555



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 149/367 (40%), Gaps = 36/367 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITG 68
           AF + + R       +   + +K  C      +A   L+ +M+   C P+  + +T+I  
Sbjct: 145 AFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKS 204

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L    +MV  M   GG   P+V  + ++I G  K   V +  +LF EM  
Sbjct: 205 LCGDSRSQEAL----DMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQ 260

Query: 129 KGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           KG+  +          LCK   + +A  +L  M+ +G+ P   TY  +++GY   G    
Sbjct: 261 KGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKE 320

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN--------------VSREMILN 226
           +  +F  M  KG +PD  ++S  ++  CK+   ++A                VS  ++L+
Sbjct: 321 SAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLH 380

Query: 227 GFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           G+           +F+ M    +V      NI I    K G + E M +F  ++      
Sbjct: 381 GYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRP 440

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  +++LI   C+ G    A E F+++    +  +   Y+ LIH     G + K    +
Sbjct: 441 NVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFI 500

Query: 338 LSMEENG 344
             M   G
Sbjct: 501 SEMMSKG 507



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 127/264 (48%), Gaps = 23/264 (8%)

Query: 110 LCKDRLVDQTKDLFMEMKDK------GINANTL---LCKKTKLVEANRLLELMMQRG--L 158
           LC  +  D+  D+ +    +       I+ NT+   LC  ++  EA  +++ M + G   
Sbjct: 169 LCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRC 228

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           +P + ++  +++G+   G+V+ A  LF+ M +KG +PDV +Y+ +++  CK   +++A  
Sbjct: 229 SPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEF 288

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           V R+M+  G            V P+  T N  I G   +GH  E  ++F  +        
Sbjct: 289 VLRQMVDKG------------VEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPD 336

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
              F+S +   CK G  + A E+F  ++ K  + D+V+Y+IL+H    EG+    N L  
Sbjct: 337 TVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFH 396

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
           SM + G   +    N L+ +  ++
Sbjct: 397 SMADKGIVSNCHCINILISAHAKR 420



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 140/344 (40%), Gaps = 46/344 (13%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           +RP N V F+S+I   C+EG + DA  +   +   G RP + T ++LI G    G M   
Sbjct: 509 HRP-NIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKA 567

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138
             +   MV+      GI +P+V    +L+ G CK   +D    LF EM          L 
Sbjct: 568 FGVLDAMVS-----VGI-EPDVVTNNTLVSGYCKSGKIDDGLILFREM----------LH 611

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           KK K                 P   TY  +L+G    G+ + A  +F  M   G   D+ 
Sbjct: 612 KKVK-----------------PTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDID 654

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y +L+ G C+N   +EA+             +F+++   +   +    N  I+ L K  
Sbjct: 655 TYKILLKGLCRNDLTDEAIT------------LFHKLGAMDCKFDITILNTMINALYKVR 702

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              E  +LF  +  S     V  +  +IR   K G  E A  +F+ +            N
Sbjct: 703 RREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLN 762

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +I  L ++G I K  Y +  ++    +L+  T + LM  F  K
Sbjct: 763 DIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSK 806



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 134/331 (40%), Gaps = 46/331 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V+ A   F   I    RP   VTFNSLI G+C+ G +  A  ++  M + G  P+V T 
Sbjct: 528 RVMDAQDVFNLVIHIGDRP-TIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTN 586

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL++G  ++G ++  L L +EM++         KP    Y  ++DGL +       K +
Sbjct: 587 NTLVSGYCKSGKIDDGLILFREMLHKK------VKPTTVTYNIVLDGLLRAGRTSAAKKM 640

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           F EM D G   +                           I TY  LL G C     + AI
Sbjct: 641 FHEMIDSGTAVD---------------------------IDTYKILLKGLCRNDLTDEAI 673

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            LF  +       D+   + +IN   K    EEA +            +F  +    +VP
Sbjct: 674 TLFHKLGAMDCKFDITILNTMINALYKVRRREEAND------------LFAAISTSGLVP 721

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              T  + I  L K G V E   +F ++E S C     + N +IR   + G    A    
Sbjct: 722 NVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYM 781

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
           +K+    +  +    ++L+     +G+ +++
Sbjct: 782 SKVDGTIISLEASTTSLLMSLFSSKGKHREQ 812



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 13/201 (6%)

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            + TY  L++  C   + ++  A    + R G        +  +   C     +EA++V 
Sbjct: 123 TVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDV- 181

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL--EISNCELF 278
                     + + M   + VP+  + N  I  LC +    E +++   +  E   C   
Sbjct: 182 ----------LLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPD 231

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           V  FN++I G  K G    A  LFN++  K +V DV  YN ++ AL K   + K  ++L 
Sbjct: 232 VVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLR 291

Query: 339 SMEENGCALDVDTFNTLMISF 359
            M + G   D  T+N ++  +
Sbjct: 292 QMVDKGVEPDGVTYNAIIHGY 312


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 128/405 (31%), Positives = 186/405 (45%), Gaps = 65/405 (16%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +VL A+     ++ R +R  ++V + ++I G C  G  RDA Q+  KM      PN+   
Sbjct: 155 RVLEAVSLLHEYVDRGFR-FDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMY 213

Query: 63  DTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
           +T+I GL + G ++    L  EMV NG+       + +V+ Y S+I G C          
Sbjct: 214 NTVIDGLCKQGLVDEACGLCTEMVENGI-------ELDVYSYNSMIHGFCSVGRFQAAVK 266

Query: 122 LFMEMKDKG------INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           L  EM  +G         N L   LCK  ++ EA  ++ +M++RG  P I +Y  L+NGY
Sbjct: 267 LLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGY 326

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           CL G V  A  +FD M  +  +P+V SY  LINGYCK   V+EAM             + 
Sbjct: 327 CLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAM------------VLL 374

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN------------------ 274
            EM   N+VP+T T N  +DGL K+G  L   +L   +  S                   
Sbjct: 375 TEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKH 434

Query: 275 ------CELFVEI-----------FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
                   LF  I           +N L+ G CK G  + A E+F  LS K    ++  Y
Sbjct: 435 EKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTY 494

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           NI+IH L KEG + +   LL  M  N    +  TF+T++ + L K
Sbjct: 495 NIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRAILVK 539



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 122/286 (42%), Gaps = 59/286 (20%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC K +++EA  LL   + RG       Y  ++NG C +GK   AI +F  M +    P+
Sbjct: 150 LCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPN 209

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
           +  Y+ +I+G CK   V+EA  +  EM+ NG +                       K+ +
Sbjct: 210 LIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLD 269

Query: 234 EMKL-CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           EM +   V P+ +T NI IDGLCK G V E   +   +     +  +  +N+L+ G C  
Sbjct: 270 EMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLS 329

Query: 293 GIFEIASELFNK-----------------------------------LSCKNLVADVVAY 317
           G    A ++F+K                                   +  KNLV D V Y
Sbjct: 330 GSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTY 389

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           N L+  L K G+   E  L+ +M  +G   D+ T+N L+  + + E
Sbjct: 390 NCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHE 435



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 28/251 (11%)

Query: 134 NTLLCKKTKLVEANRLLELMM----QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
           N LL    KL   N ++ L      +  + P + T++ L+N +  +G++  A +L  ++ 
Sbjct: 73  NKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNIL 132

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-------------------- 229
           + GF  DV   + L+ G C    V EA+++  E +  GF+                    
Sbjct: 133 KMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTR 192

Query: 230 ---KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
              ++F +MK   V P     N  IDGLCK G V E   L   +  +  EL V  +NS+I
Sbjct: 193 DAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMI 252

Query: 287 RGCCKFGIFEIASELFNKLSCKNLV-ADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
            G C  G F+ A +L +++  +  V  DV  +NILI  L K G++ +   ++  M + G 
Sbjct: 253 HGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGW 312

Query: 346 ALDVDTFNTLM 356
             D+ ++N LM
Sbjct: 313 KPDIVSYNALM 323


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 163/339 (48%), Gaps = 45/339 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF +L+ G CMEG +     L   M   G +PNV T + +I  L ++G  N  L   ++
Sbjct: 133 VTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQ 192

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M       G +  PNV  Y +LIDG C    +D+ + +F                     
Sbjct: 193 MEK----VGCV--PNVVNYSTLIDGYCLRGQMDEARSVF--------------------- 225

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                 +LM+ +G  P ++TYT L+NGYC + ++  A+ L D   RKG +PD+ +++ +I
Sbjct: 226 ------DLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTII 279

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           +G C+      A  + R +  +G              P   T  + +DGLCK+G++ E  
Sbjct: 280 SGLCRAGRPLAAQQLFRYICAHGH------------TPNIMTYGVLLDGLCKHGNLEEAF 327

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            LF  ++ S  +  + I+  LI   CK G  +   ELF++L  + L  +V  Y  L+ AL
Sbjct: 328 ALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGAL 387

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            KEG I + + L   MEE+GC  D   +N ++  FLQ +
Sbjct: 388 CKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHK 426



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 147/344 (42%), Gaps = 46/344 (13%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           +M +   + R  +P N  T+N +I      G   +A   +K+M   GC PNV    TLI 
Sbjct: 152 MMLYDDMLVRGLQP-NVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLID 210

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G    G M+    +   MV+          PNV+ Y SL++G CK   ++          
Sbjct: 211 GYCLRGQMDEARSVFDLMVSKGC------TPNVYTYTSLMNGYCKIERIE---------- 254

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                            EA +LL+  +++GL P I T+T +++G C  G+   A  LF  
Sbjct: 255 -----------------EAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRY 297

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           +   G  P++ +Y VL++G CK+ N+EEA              +F EM+   V P     
Sbjct: 298 ICAHGHTPNIMTYGVLLDGLCKHGNLEEAF------------ALFQEMQRSTVKPNLVIY 345

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
            I ID LCK G + +  ELF  L     +  V  + +L+   CK G+   A +LF K+  
Sbjct: 346 TILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEE 405

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
                D  AYN++I    +         L+  M   G + D  T
Sbjct: 406 DGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAAT 449



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 14/228 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+ SL+ G+C    I +A QL+ +    G  P++ T  T+I+GL R G         
Sbjct: 236 NVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAA---- 291

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           Q++   +   G  + PN+  YG L+DGLCK   +++   LF EM+   +  N +      
Sbjct: 292 QQLFRYICAHG--HTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILI 349

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  K+ +   L   ++  GL P ++TYT L+   C  G +  A  LF  M   G  
Sbjct: 350 DSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCT 409

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
           PD  +Y+V+I G+ ++ +   A  +  EM+  GF        L N  P
Sbjct: 410 PDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRALLNDFP 457



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 12/213 (5%)

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
            LM+ R   P I  ++ L +    +G     + L   +   G   D+ S S+LIN +C  
Sbjct: 51  RLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHL 110

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
             V+  ++V  +++  G +            P   T    ++GLC  G + +VM L+  +
Sbjct: 111 HRVDFGLSVLSKILKLGLE------------PSIVTFTTLLNGLCMEGKMDQVMMLYDDM 158

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
            +   +  V  +N +I    K G    A     ++     V +VV Y+ LI      GQ+
Sbjct: 159 LVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQM 218

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +   +   M   GC  +V T+ +LM  + + E
Sbjct: 219 DEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIE 251


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 176/370 (47%), Gaps = 37/370 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+N +I   C  G + +A  L+KKM   G  P+V T +T++ GL ++G +   L 
Sbjct: 77  PPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALL 136

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  EM   +G       PN   + ++I GLC+   +DQ   +F EM+ + I  ++     
Sbjct: 137 LFNEMER-LG-----CTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGI 190

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               L K  KL EA +L   M+  G+ P   TY  +++G CL   ++ A+ LF SM  KG
Sbjct: 191 LIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKG 250

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------K 229
             P  F++++LI+ +CK   ++EA  + + M  +G                        +
Sbjct: 251 CRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            +  +M      P   T N  I GLCK G + E  E+   +  S     V  +N+L+ G 
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C+ G  E A EL + +  + L  +VV Y  L+  L K  ++ +   +   M+ +GCA ++
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNL 430

Query: 350 DTFNTLMISF 359
            T+  L++ F
Sbjct: 431 FTYTALILGF 440



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 160/340 (47%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V + SLI G CM  +  DA +L   M   GC P+  T + +I    + G +     L ++
Sbjct: 46  VAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKK 105

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+         + P+V  Y +++DGLCK   V++   LF EM+  G   N          
Sbjct: 106 MIEDG------HVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILG 159

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+++K+ +A ++   M  R + P  ++Y  L++G    GK+N A  LF  M   G  P 
Sbjct: 160 LCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPS 219

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+V+I+G C  + ++EA+            ++F  M+     P  FT NI ID  CK
Sbjct: 220 AVTYNVVIHGMCLAYTLDEAL------------ELFKSMRSKGCRPSRFTFNILIDAHCK 267

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E   L   +        V  +++LI G C     + A  L   +  +     VV 
Sbjct: 268 RGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVT 327

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            N LIH L K G+IK+   +L +M  +G + DV T+NTL+
Sbjct: 328 QNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 165/374 (44%), Gaps = 38/374 (10%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + +V  AL+ F    R    P N  + N++I G C +  I  A Q+  +M      P+  
Sbjct: 128 SGRVEEALLLFNEMERLGCTP-NRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSW 186

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           +   LI GL + G +N   KL + M++      GI  P+   Y  +I G+C    +D+  
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFRRMLDS-----GI-TPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 121 DLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +LF  M+ KG   +           CK+ K+ EA RLL+ M   G  P + TY+ L++G 
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG----- 227
           C + +V+ A  L + M ++   P V + + LI+G CK   ++EA  V   M+ +G     
Sbjct: 301 CSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDV 360

Query: 228 ------------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                              +++ ++M    + P   T    + GLCK   + E   +F  
Sbjct: 361 VTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQ 420

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           ++ S C   +  + +LI G C  G  +   +LF ++ C  +  D V Y  L   L K G+
Sbjct: 421 MKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 480

Query: 330 IKKENYLLLSMEEN 343
             +   +L    E+
Sbjct: 481 SARALEILREGRES 494



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 135/290 (46%), Gaps = 31/290 (10%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+ + YG LIDGL K   ++  +DLF ++   G+  +T+        LC      +A  L
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              M +RG  P   TY  +++  C  G +  A  L   M   G +PDV +Y+ +++G CK
Sbjct: 68  FADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 127

Query: 210 NFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFT 246
           +  VEEA+ +  EM   G                         ++F+EM+  ++ P++++
Sbjct: 128 SGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWS 187

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
             I IDGL K G + E  +LF  +  S        +N +I G C     + A ELF  + 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            K        +NILI A  K G++ +   LL  M ++G   DV T++TL+
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLI 297



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +   PD +SY +LI+G  K               LN  + +F ++    V P T   
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGK------------LNDARDLFQKLLHSGVTPSTVAY 48

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              I GLC      +  ELF  +    C      +N +I   CK G+ E A +L  K+  
Sbjct: 49  TSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIE 108

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              V DVV YN ++  L K G++++   L   ME  GC  +  + NT+++   Q+
Sbjct: 109 DGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQ 163



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 43/241 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N+LI G C  G I++A +++  M + G  P+V T +TL+ G  R G      +L  +
Sbjct: 326 VTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSD 385

Query: 85  MV---------------------NGMGDFGGIYK--------PNVFCYGSLIDGLCKDRL 115
           MV                     N + +  G++         PN+F Y +LI G C    
Sbjct: 386 MVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQ 445

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLL----ELMMQRGLNPVIF 163
           VD    LF EM   GI+ + +        LCK  +   A  +L    E +        ++
Sbjct: 446 VDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVY 505

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
            +   ++G    GK+ +A+     M R G +P     + L+ G CK+    EA  V  E+
Sbjct: 506 RFA--VDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563

Query: 224 I 224
           +
Sbjct: 564 M 564


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 190/393 (48%), Gaps = 44/393 (11%)

Query: 6   GALMAFGSF----IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           GAL    SF    +R    P + + FN +   +  +  I +A  +  KM      P V  
Sbjct: 321 GALSEMHSFLDLMVRNGVSPDHHI-FNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVN 379

Query: 62  CDTLITGLRRTGNMN-LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
              LI  L + G ++   LK +Q +  G+        P++F + SL+ GLC     ++ +
Sbjct: 380 YGALIDALCKLGRVDDAVLKFNQMINEGV-------TPDIFVFSSLVYGLCTVDKWEKAE 432

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            LF E+ D+GI  N          LC++ +++EA RL++LM++  + P + +Y  L++G+
Sbjct: 433 KLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGH 492

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-- 230
           CL G+++ A  L D M   G  PD F+Y+ L++GYCK   +++A ++ REM++ G     
Sbjct: 493 CLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGV 552

Query: 231 ---------IFNEMKLCNVVP------------ETFTCNIFIDGLCKNGHVLEVMELFPT 269
                    +F   + C                + +T  I ++GLC+N  V E  ++F +
Sbjct: 553 VTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQS 612

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           L   + +L +   N +I    K G  E A +LF  +S   LV DV  Y ++   L KEG 
Sbjct: 613 LCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGS 672

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +++ + L  +MEENG A +    N L+   L +
Sbjct: 673 LEELDELFSAMEENGTAPNSRMLNALVRWLLHR 705



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 174/379 (45%), Gaps = 35/379 (9%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITG 68
           AFG  ++  +   N V F  L+KG C    + +A+  L+++M  FGC  NV + + L+ G
Sbjct: 114 AFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKG 173

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +   D  G + PNV  Y ++IDGLCK ++VD+ K +F  M D
Sbjct: 174 LCNEKRAEEALELMHMMAD---DGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMID 230

Query: 129 KGINAN--TLLC------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           KG+  N  T  C         K  E  ++L+ M   GL P    Y  LL+  C  G+   
Sbjct: 231 KGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTE 290

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----------- 229
           A  +FDS+ RKG  P V  Y +L++GY     + E  +    M+ NG             
Sbjct: 291 ARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFN 350

Query: 230 ------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        IF++M+   + P        ID LCK G V + +  F  +       
Sbjct: 351 AYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTP 410

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            + +F+SL+ G C    +E A +LF ++  + +  +   +NIL+  L +EG++ +   L+
Sbjct: 411 DIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLI 470

Query: 338 LSMEENGCALDVDTFNTLM 356
             M       DV ++NTL+
Sbjct: 471 DLMLRVDVRPDVISYNTLV 489


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 175/368 (47%), Gaps = 30/368 (8%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           G    +   IRR   P N +TFN++I G C  G +  A  +V  M  +G  PNV T +TL
Sbjct: 213 GVEFVYKEMIRRKISP-NLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTL 271

Query: 66  ITG---LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           I G   + R G M     + +EMV           PN   +  LIDG CKD  +     +
Sbjct: 272 IDGYCKMGRVGKMYKADAILKEMVENK------VSPNSVTFNVLIDGFCKDENLSAALKV 325

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EM+ +G+    +        LC + KL EA  LL+ M+   L P + TY  L+NGYC 
Sbjct: 326 FEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCK 385

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
              +  A  LFD++ ++G  P+V +++ L++GYCK   +EEA  + + M+  GF      
Sbjct: 386 KKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGF------ 439

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                 +P   T N  I G C+ G + EV  L   ++    +     +N LI   C+   
Sbjct: 440 ------LPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKE 493

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A+ L +++  K L    + YNIL++    EG ++    L   ME+ G   +V T+N 
Sbjct: 494 PKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNV 553

Query: 355 LMISFLQK 362
           L+  + +K
Sbjct: 554 LIQGYCRK 561



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 168/366 (45%), Gaps = 30/366 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK +  L AF       Y+ L+ ++ N L+     E        + K+M      PN+ T
Sbjct: 174 SKTVLGLEAFKRAGDYRYK-LSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLIT 232

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD---Q 118
            +T+I GL + G +N       ++V+ M  +G  + PNV  Y +LIDG CK   V    +
Sbjct: 233 FNTVINGLCKVGKLNKA----GDVVDDMKVWG--FWPNVVTYNTLIDGYCKMGRVGKMYK 286

Query: 119 TKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
              +  EM +  ++ N++         CK   L  A ++ E M  +GL P + TY  L+N
Sbjct: 287 ADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVN 346

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
           G C  GK+N A  L D M      P+V +Y+ LINGYCK   +EEA            ++
Sbjct: 347 GLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEA------------RE 394

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F+ +    + P   T N  + G CK G + E   L   +           +N LI G C
Sbjct: 395 LFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFC 454

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           + G  E    L N++ C+ + AD V YNILI A  ++ + KK   L+  M + G      
Sbjct: 455 REGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHL 514

Query: 351 TFNTLM 356
           T+N L+
Sbjct: 515 TYNILL 520



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 139/287 (48%), Gaps = 25/287 (8%)

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           E     GD+   YK +V     L+  L K+      + ++ EM  + I+ N +       
Sbjct: 181 EAFKRAGDYR--YKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVIN 238

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC---LVGKVNVAIALFDSMARKG 192
            LCK  KL +A  +++ M   G  P + TY  L++GYC    VGK+  A A+   M    
Sbjct: 239 GLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENK 298

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+  +++VLI+G+CK+ N+  A+            K+F EM+   + P   T N  ++
Sbjct: 299 VSPNSVTFNVLIDGFCKDENLSAAL------------KVFEEMQSQGLKPTVVTYNSLVN 346

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLC  G + E   L   +  SN +  V  +N+LI G CK  + E A ELF+ +  + L  
Sbjct: 347 GLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTP 406

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +V+ +N L+H   K G++++   L   M E G   +  T+N L++ F
Sbjct: 407 NVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGF 453



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 68/237 (28%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+N+LI G+C +  + +A +L   +   G  PNV T +TL+ G  + G M     L 
Sbjct: 372 NVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQ 431

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M+         + PN   Y  LI G C++  +++ K+L  EM+ +G+ A+T+      
Sbjct: 432 KVMLEKG------FLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILI 485

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL-------------------- 174
              C+K +  +A RL++ M+ +GL P   TY  LLNGYC+                    
Sbjct: 486 SAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRW 545

Query: 175 ---------------VGKVNVAIALF-------------------DSMARKGFMPDV 197
                           GK+  A  L                    + M  KGF+PD+
Sbjct: 546 ANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPDI 602


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 180/371 (48%), Gaps = 49/371 (13%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  Y+P + VT  +LIKG C++G ++ A     K+   G R +  +  TLI
Sbjct: 117 AFSVLSKILKWGYQP-DTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLI 175

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G+ + G     ++L + +       G + +PNV  Y ++ID LCK +LV +  +LF EM
Sbjct: 176 NGVCKIGETRAAIQLLRRID------GRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEM 229

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
             KGI+AN                           + TY+ +++G+C+VGK+  A+   +
Sbjct: 230 SVKGISAN---------------------------VVTYSAIIHGFCIVGKLTEALGFLN 262

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREMILNGF-KKI 231
            M  K   PDV+ Y+ L++   K   V+EA NV              +   +++G+ K +
Sbjct: 263 EMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHV 322

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           FN + L  V P+ ++ NI I+ LCK   V E + L+  +   N       +NSLI G CK
Sbjct: 323 FNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCK 382

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A +L +++  +   A+V+ YN LI+ L K GQ+ K   L+  M++ G   D+ T
Sbjct: 383 SGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYT 442

Query: 352 FNTLMISFLQK 362
            N L+   L K
Sbjct: 443 LNILLHGLLCK 453



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 154/328 (46%), Gaps = 29/328 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT++++I GFC+ G + +A   + +M      P+V   +TL+  L + G +     + 
Sbjct: 237 NVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVL 296

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-----RLVDQTKDLFMEMKDKGINANTLL 137
             +V          KPNV  Y +LIDG  K       L+  T D++       I  N L 
Sbjct: 297 AVIVKT------CLKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVW----SYNIMINRL- 345

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++ EA  L + M Q+ + P   TY  L++G C  G+++ A  L D M  +G   +V
Sbjct: 346 CKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANV 405

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL-CK 256
            +Y+ LING CKN  +++A+             + N+MK   + P+ +T NI + GL CK
Sbjct: 406 ITYNSLINGLCKNGQLDKAI------------ALINKMKDQGIQPDMYTLNILLHGLLCK 453

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              +     LF  L        V  +N +I G CK G+ + A  L +K+       + + 
Sbjct: 454 GKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAIT 513

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
           + I+I AL ++G+  K   LL  M   G
Sbjct: 514 FKIIICALLEKGETDKAEKLLCEMIARG 541



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 108/214 (50%), Gaps = 15/214 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N +I   C    + +A  L K+M      PN  T ++LI GL ++G ++       ++
Sbjct: 337 SYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAW----DL 392

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---------L 136
           ++ M D G  +  NV  Y SLI+GLCK+  +D+   L  +MKD+GI  +          L
Sbjct: 393 IDEMHDRG--HHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGL 450

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  +L  A  L + ++ +G +P ++TY  ++ G+C  G ++ A AL   M   G  P+
Sbjct: 451 LCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPN 510

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
             ++ ++I    +    ++A  +  EMI  G  K
Sbjct: 511 AITFKIIICALLEKGETDKAEKLLCEMIARGLLK 544



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 26/237 (10%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           +V  +R LEL   + + P  FT   L+N +C +G++N+A ++   + + G+ PD  + + 
Sbjct: 82  VVSLSRRLEL---KAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTT 138

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFK--------------KIFNEMKLCNVV------- 241
           LI G C    V++A++   +++  GF+              KI        ++       
Sbjct: 139 LIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRL 198

Query: 242 --PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
             P     N  ID LCK   V E   LF  + +      V  ++++I G C  G    A 
Sbjct: 199 TEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEAL 258

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              N++  K +  DV  YN L+ AL KEG++K+   +L  + +     +V T+NTL+
Sbjct: 259 GFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLI 315



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 12/200 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P I  +  +L+ +  +      ++L   +  K   PD F+ ++LIN +C    +  A +V
Sbjct: 61  PPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSV 120

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             +++  G++            P+T T    I GLC  G V + +     L      L  
Sbjct: 121 LSKILKWGYQ------------PDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQ 168

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + +LI G CK G    A +L  ++  +    +VV YN +I  L K   + +   L   
Sbjct: 169 VSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSE 228

Query: 340 MEENGCALDVDTFNTLMISF 359
           M   G + +V T++ ++  F
Sbjct: 229 MSVKGISANVVTYSAIIHGF 248



 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   + + Y P N  T+N +I G C EG + +A  L  KM   GC PN  T   +I  L 
Sbjct: 464 FQDLLDKGYHP-NVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALL 522

Query: 71  RTGNMNLTLKLHQEMV 86
             G  +   KL  EM+
Sbjct: 523 EKGETDKAEKLLCEMI 538



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 48/125 (38%)

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F+ M      P     N  +D   K  H   V+ L   LE+   +      N LI   C 
Sbjct: 51  FHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCH 110

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G   +A  + +K+       D V    LI  L  +GQ+KK  +    +   G  LD  +
Sbjct: 111 LGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVS 170

Query: 352 FNTLM 356
           + TL+
Sbjct: 171 YGTLI 175


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 167/345 (48%), Gaps = 25/345 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFNS++ G C E  I DA  + K+    GCRPNV T  TLI GL +   M+  L+L  +
Sbjct: 209 ITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAK 268

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
           MV  +G      + N   Y +++DGL K   ++    +  +M+D G     +  NTL+  
Sbjct: 269 MVE-LG-----CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDG 322

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K+ +L EA  LL  M++ G +P + TYT L +G C  G+ + A+ + D MA +G  P+
Sbjct: 323 FFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPN 382

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +YS +++G CK   V EA+    +M  +             V P     +  IDGLCK
Sbjct: 383 AITYSSIVDGLCKAGRVTEALGYFEKMARDEV-----------VAPHVIAYSALIDGLCK 431

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E  E    +  +     V  F+ LI G C  G  +   ELF  ++ +  V D+V 
Sbjct: 432 AGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVT 491

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           Y  L+  L +  ++ +   L   M  +G + D  T  T++   L+
Sbjct: 492 YATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLE 536



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 173/366 (47%), Gaps = 36/366 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+L+     +G  ++A  L+++MA  GC P + T   +I GL + G +    ++ 
Sbjct: 135 NAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVV 194

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM   M + G    P+V  + S++DGLCK++ +    ++F    ++G   N +      
Sbjct: 195 DEMF--MIESG--LSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLI 250

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K  K+ EA +LL  M++ G      TY+ +++G   VG++  A+ +   M   G +
Sbjct: 251 DGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCL 310

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PD  +Y+ LI+G+ K   + EA+ + REM+  GF                        +I
Sbjct: 311 PDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEI 370

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-CELFVEIFNSLIRGCC 290
            + M      P   T +  +DGLCK G V E +  F  +         V  +++LI G C
Sbjct: 371 LDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLC 430

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A E   ++     + DVV ++ILI+ L   G+I     L   M E GC  D+ 
Sbjct: 431 KAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMV 490

Query: 351 TFNTLM 356
           T+ TL+
Sbjct: 491 TYATLV 496



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 164/363 (45%), Gaps = 43/363 (11%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + KV  A+  F   + +   P + VT+ +LI G   +  +++A  L ++    GC P V 
Sbjct: 8   SRKVDKAITLFKQMVDKAIYP-DVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVV 66

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T +T+I GL + G +   L L+ +M    G     ++P V  Y +LIDGLC+D  VD+  
Sbjct: 67  TYNTMIDGLCKCGRIENALTLYDDMAIHFG-----FRPTVVTYSTLIDGLCRDHEVDKG- 120

Query: 121 DLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
                            CK         LLE M  RG  P   TY  L+N     G+   
Sbjct: 121 -----------------CK---------LLEEMAGRGCAPNAVTYNTLVNALLGQGRSKE 154

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A +L + MA  G  P++ ++ ++I G CK   +E A  V  EM           M    +
Sbjct: 155 AFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMF----------MIESGL 204

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T N  +DGLCK   +L+   +F       C   V  +++LI G  K    + A +
Sbjct: 205 SPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQ 264

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           L  K+      A+ V Y+ ++  L K G+++    +L  M + GC  D  T+NTL+  F 
Sbjct: 265 LLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFF 324

Query: 361 QKE 363
           +++
Sbjct: 325 KRQ 327



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 13/206 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +L  G C  G   +A +++  MA  GC PN  T  +++ GL + G +   L   ++
Sbjct: 349 VTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEK 408

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M         +  P+V  Y +LIDGLCK   +D+  +    M   G   + +        
Sbjct: 409 MARDE-----VVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILING 463

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   ++     L   M +RG  P + TY  L++  C   +V+ A  LF  M   G  PD
Sbjct: 464 LCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPD 523

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSRE 222
             +   +I+G  +    E+A  +  E
Sbjct: 524 RSTRRTMIHGLLEVNRDEDAKRIQDE 549


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 176/370 (47%), Gaps = 37/370 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+N +I   C  G + +A  L+KKM   G  P+V T +T++ GL ++  +   L 
Sbjct: 77  PPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALL 136

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  EM   +G       PN   + ++I GLC+   +DQ   +F EM+ K I  ++     
Sbjct: 137 LFNEMER-LG-----CTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGI 190

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               L K  KL EA +L + M+  G+ P   TY  +++G CL   ++ A+ LF SM  KG
Sbjct: 191 LIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKG 250

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------K 229
             P  F++++LI+ +CK   ++EA  + + M  +G                        +
Sbjct: 251 CRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            +  +M      P   T N  I GLCK G + E  E+   +  S     V  +N+L+ G 
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C+ G  E A EL + +  + L  +VV Y  L+  L K  ++ +   +   M+ +GCA ++
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNL 430

Query: 350 DTFNTLMISF 359
            T+  L++ F
Sbjct: 431 FTYTALILGF 440



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 160/340 (47%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V + SLI G CM  +  DA +L   M   GC P+  T + +I    + G +     L ++
Sbjct: 46  VAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKK 105

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+         + P+V  Y +++DGLCK   V++   LF EM+  G   N          
Sbjct: 106 MIEDG------HVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILG 159

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+++K+ +A ++   M  + + P  ++Y  L++G    GK+N A  LF  M   G  P 
Sbjct: 160 LCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPS 219

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+V+I+G C  + ++EA+            ++F  M+     P  FT NI ID  CK
Sbjct: 220 AVTYNVVIHGMCLAYTLDEAL------------ELFKSMRSKGCRPSRFTFNILIDAHCK 267

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E   L   +        V  +++LI G C     + A  L   +  +     VV 
Sbjct: 268 RGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVT 327

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            N LIH L K G+IK+   +L +M  +G + DV T+NTL+
Sbjct: 328 QNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 168/374 (44%), Gaps = 38/374 (10%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           +S+V  AL+ F    R    P N  + N++I G C +  I  A Q+  +M      P+  
Sbjct: 128 SSRVEEALLLFNEMERLGCTP-NRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSW 186

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           +   LI GL + G +N   KL Q M++      GI  P+   Y  +I G+C    +D+  
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFQRMLDS-----GI-TPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 121 DLFMEMKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +LF  M+ KG        N L+   CK+ KL EA RLL+ M   G  P + TY+ L++G 
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG----- 227
           C + +V+ A  L + M ++   P V + + LI+G CK   ++EA  V   M+ +G     
Sbjct: 301 CSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDV 360

Query: 228 ------------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                              +++ ++M    + P   T    + GLCK   + E   +F  
Sbjct: 361 VTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQ 420

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           ++ S C   +  + +LI G C  G  +   +LF ++ C  +  D V Y  L   L K G+
Sbjct: 421 MKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 480

Query: 330 IKKENYLLLSMEEN 343
             +   +L    E+
Sbjct: 481 SARALEILREGRES 494



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 31/290 (10%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+ + YG LIDGL K   ++  ++LF ++   G+  +T+        LC      +A  L
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              M +RG  P   TY  +++  C  G +  A  L   M   G +PDV +Y+ +++G CK
Sbjct: 68  FADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 127

Query: 210 NFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFT 246
           +  VEEA+ +  EM   G                         ++F+EM+  ++ P++++
Sbjct: 128 SSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWS 187

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
             I IDGL K G + E  +LF  +  S        +N +I G C     + A ELF  + 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            K        +NILI A  K G++ +   LL  M ++G   DV T++TL+
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLI 297



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 12/175 (6%)

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +   PD +SY +LI+G  K   + +A N+ ++++ +G            V P T   
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSG------------VTPSTVAY 48

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              I GLC      +  ELF  +    C      +N +I   CK G+ E A +L  K+  
Sbjct: 49  TSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIE 108

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              V DVV YN ++  L K  ++++   L   ME  GC  +  + NT+++   Q+
Sbjct: 109 DGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQ 163



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 43/241 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N+LI G C  G I++A +++  M + G  P+V T +TL+ G  R G      +L  +
Sbjct: 326 VTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSD 385

Query: 85  MV---------------------NGMGDFGGIYK--------PNVFCYGSLIDGLCKDRL 115
           MV                     N + +  G++         PN+F Y +LI G C    
Sbjct: 386 MVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQ 445

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLL----ELMMQRGLNPVIF 163
           VD    LF EM   GI+ + +        LCK  +   A  +L    E +        ++
Sbjct: 446 VDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVY 505

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
            +   ++G    GK+ +A+     M R G +P     + L+ G CK+    EA  V  E+
Sbjct: 506 RFA--VDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563

Query: 224 I 224
           +
Sbjct: 564 M 564


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 176/367 (47%), Gaps = 73/367 (19%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +++  A+      +   Y+P + VTF +LI G  +     +A  L+ +M   GC+P++ T
Sbjct: 162 NRISDAVALVDQMVEMGYKP-DTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVT 220

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
              ++ GL + G+ +L L L  +M           + NV  Y ++ID LCK R  D   +
Sbjct: 221 YGAVVNGLCKRGDTDLALNLLNKME------AAKIEANVVIYSTVIDSLCKYRHEDDALN 274

Query: 122 LFMEMKDKGINANTL--------LC----------------------------------- 138
           LF EM++KG+  N +        LC                                   
Sbjct: 275 LFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFV 334

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           KK KLV+A +L E M++R ++P IFTY+ L+NG+C++ ++  A  + + M RK  +P+V 
Sbjct: 335 KKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVV 394

Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEM 235
           +Y+ LING+CK   V++ M + REM              +++GF         + +F +M
Sbjct: 395 TYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 454

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               V P   T NI +DGLCKNG + + M +F  L+ S  E  +  +N +I G CK G +
Sbjct: 455 VSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKW 514

Query: 296 EIASELF 302
           ++    F
Sbjct: 515 KMGGIYF 521



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 160/353 (45%), Gaps = 27/353 (7%)

Query: 12  GSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71
           G  ++  Y P + VT NSL+ GFC    I DA  LV +M   G +P+  T  TLI GL  
Sbjct: 137 GKMMKLGYEP-DIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFL 195

Query: 72  TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
               +  + L   MV          +P++  YG++++GLCK    D   +L  +M+   I
Sbjct: 196 HNKASEAVALIDRMVQRGC------QPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKI 249

Query: 132 NANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
            AN +        LCK     +A  L   M  +G+ P + TY+ L++  C  G+ + A  
Sbjct: 250 EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASR 309

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           L   M  +   P++ ++S LI+ + K   + +A            +K++ EM   ++ P 
Sbjct: 310 LLSDMIERKINPNLVTFSALIDAFVKKGKLVKA------------EKLYEEMIKRSIDPN 357

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
            FT +  I+G C    + E  ++   +   +C   V  +N+LI G CK    +   ELF 
Sbjct: 358 IFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFR 417

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++S + LV + V Y  LIH   +         +   M   G   ++ T+N L+
Sbjct: 418 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILL 470



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 26/352 (7%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           RR +       +  +++    +  + DA  L   MA     P++     L++ + +    
Sbjct: 35  RRAFSGKTSYDYREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKF 94

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----- 130
           +L +   ++M     +  GI   N++ Y  LI+  C+   +     L  +M   G     
Sbjct: 95  DLVISFGEKM-----EILGI-SHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDI 148

Query: 131 INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +  N+LL   C   ++ +A  L++ M++ G  P   T+T L++G  L  K + A+AL D 
Sbjct: 149 VTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDR 208

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M ++G  PD+ +Y  ++NG CK  + + A+N            + N+M+   +       
Sbjct: 209 MVQRGCQPDLVTYGAVVNGLCKRGDTDLALN------------LLNKMEAAKIEANVVIY 256

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           +  ID LCK  H  + + LF  +E       V  ++SLI   C +G +  AS L + +  
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIE 316

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + +  ++V ++ LI A  K+G++ K   L   M +     ++ T+++L+  F
Sbjct: 317 RKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGF 368



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 154/362 (42%), Gaps = 56/362 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N LI  FC    +  A  L+ KM   G  P++ T ++L+ G      ++  + L 
Sbjct: 112 NLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALV 171

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            +MV  MG     YKP+   + +LI GL            F+                 K
Sbjct: 172 DQMVE-MG-----YKPDTVTFTTLIHGL------------FLH---------------NK 198

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
             EA  L++ M+QRG  P + TY  ++NG C  G  ++A+ L + M       +V  YS 
Sbjct: 199 ASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYST 258

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCN 239
           +I+  CK  + ++A+N+  EM   G +                       ++ ++M    
Sbjct: 259 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERK 318

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           + P   T +  ID   K G +++  +L+  +   + +  +  ++SLI G C       A 
Sbjct: 319 INPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAK 378

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ++   +  K+ + +VV YN LI+   K  ++ K   L   M + G   +  T+ TL+  F
Sbjct: 379 QMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGF 438

Query: 360 LQ 361
            Q
Sbjct: 439 FQ 440



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 136/291 (46%), Gaps = 24/291 (8%)

Query: 84  EMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           E+ + +G FG + +    P++  +  L+  + K    D       +M+  GI+ N     
Sbjct: 58  ELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYN 117

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 C+ ++L  A  LL  MM+ G  P I T   LLNG+C   +++ A+AL D M   
Sbjct: 118 ILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEM 177

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G+ PD  +++ LI+G   +    EA+ +   M+  G +            P+  T    +
Sbjct: 178 GYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQ------------PDLVTYGAVV 225

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +GLCK G     + L   +E +  E  V I++++I   CK+   + A  LF ++  K + 
Sbjct: 226 NGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVR 285

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +V+ Y+ LI  L   G+    + LL  M E     ++ TF+ L+ +F++K
Sbjct: 286 PNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKK 336



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 15/197 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K++ A   +   I+R   P N  T++SLI GFCM   + +A Q+++ M    C PNV T 
Sbjct: 338 KLVKAEKLYEEMIKRSIDP-NIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTY 396

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI G  +   ++  ++L +EM +  G  G     N   Y +LI G  + R  D  + +
Sbjct: 397 NTLINGFCKAKRVDKGMELFREM-SQRGLVG-----NTVTYTTLIHGFFQARDCDNAQMV 450

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F +M   G++ N L        LCK  KL +A  + E + +  + P I+TY  ++ G C 
Sbjct: 451 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 510

Query: 175 VGKVNVAIALFDSMARK 191
            GK  +    F + A K
Sbjct: 511 AGKWKMGGIYFVASALK 527


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 190/423 (44%), Gaps = 73/423 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  Y P + +TFN+LIKG C+ G +++A      +   G   +  +  TLI
Sbjct: 122 AFSMMAKILKMGYEP-DTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLI 180

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G     L++ +++       G + K NV  Y ++ID LCK +LV    +L+ +M
Sbjct: 181 NGLCKIGETRTALQMLRKID------GKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQM 234

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             K I+ + +                                           LCK+  L
Sbjct: 235 IAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNL 294

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
             A  +L +MM+ G+ P + TY+ L++GYCLV +VN A  + +++++ G  P+  SY  +
Sbjct: 295 KGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTM 354

Query: 204 INGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNV 240
           ING+CK   V+EA+++  +M   G                         ++ +EM     
Sbjct: 355 INGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQ 414

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
               FT N  ID LCKN HV + + L   ++    +  +  FN LI G CK G  + A +
Sbjct: 415 PANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQD 474

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           +F  L  K    +   YNI+++ L KEG   +   LL  M++NG   D  T+ TL+ +  
Sbjct: 475 VFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALF 534

Query: 361 QKE 363
            K+
Sbjct: 535 HKD 537



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 164/345 (47%), Gaps = 27/345 (7%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V+ A   +   I +   P + VTF++LI GFC+ G + +A  L ++M      P+  T +
Sbjct: 224 VIDAYELYSQMIAKKISP-DVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFN 282

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            L+  L + GN    LK  + M+  M   G +  PNV  Y SL+DG C    V++ K + 
Sbjct: 283 ILVDALCKEGN----LKGAKNMLVVMMKEGVM--PNVVTYSSLMDGYCLVNQVNKAKHVL 336

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
             +   G   N           CK   + EA  L   M  +G+ P   TY  L++G C  
Sbjct: 337 NTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKS 396

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G+++ A  L D M   G   ++F+Y+ LI+  CKN +V++A+ + +++   G +      
Sbjct: 397 GRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQ------ 450

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                 P+ +T NI I GLCK G +    ++F  L      +    +N ++ G CK G+F
Sbjct: 451 ------PDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLF 504

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
           + A  L +K+    ++ D V Y  LI AL  + + +K   LL  M
Sbjct: 505 DEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREM 549



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 107/219 (48%), Gaps = 12/219 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   ++  A  ++  +++ G  P   T+  L+ G CL GKV  A+   D +   GF  D 
Sbjct: 114 CHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQ 173

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           FSY  LING CK      A+ + R        KI  ++   NVV      N  ID LCK+
Sbjct: 174 FSYGTLINGLCKIGETRTALQMLR--------KIDGKLVKINVV----MYNTIIDSLCKH 221

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V++  EL+  +        V  F++LI G C  G  E A  LF ++  KN+  D   +
Sbjct: 222 KLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTF 281

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           NIL+ AL KEG +K    +L+ M + G   +V T+++LM
Sbjct: 282 NILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLM 320



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 102/210 (48%), Gaps = 14/210 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  ++ ++I GFC    + +A  L   M   G  P+  T ++LI GL ++G ++      
Sbjct: 347 NAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAW--- 403

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            E+V+ M D G     N+F Y  LID LCK+  VDQ   L  ++KD+GI  +        
Sbjct: 404 -ELVDEMHDNGQ--PANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILI 460

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  +L  A  + + ++ +G +   +TY  ++NG C  G  + A AL   M   G +
Sbjct: 461 YGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGII 520

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           PD  +Y  LI         E+A  + REMI
Sbjct: 521 PDAVTYETLIQALFHKDENEKAEKLLREMI 550



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 150/404 (37%), Gaps = 117/404 (28%)

Query: 25  VTFNSLIKGFCMEGN--IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + FN ++       N     A  L +++   G  P++ T + LI        MN    + 
Sbjct: 67  IEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMM 126

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            +++  MG     Y+P+   + +LI GLC +                            K
Sbjct: 127 AKILK-MG-----YEPDTITFNTLIKGLCLN---------------------------GK 153

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG-----------------KVNV----- 180
           + EA    + ++  G +   F+Y  L+NG C +G                 K+NV     
Sbjct: 154 VKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNT 213

Query: 181 -------------AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
                        A  L+  M  K   PDV ++S LI G+C    +EEA  + REM+L  
Sbjct: 214 IIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLK- 272

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV------LEVM----------------- 264
                      N+ P+ +T NI +D LCK G++      L VM                 
Sbjct: 273 -----------NINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMD 321

Query: 265 ------------ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
                        +  T+           + ++I G CK  + + A  LFN +  K +  
Sbjct: 322 GYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAP 381

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D V YN LI  L K G+I     L+  M +NG   ++ T+N L+
Sbjct: 382 DKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLI 425



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 12/179 (6%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           AI+L   +   G  PD+F++++LIN YC    +  A ++  +++  G++           
Sbjct: 87  AISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYE----------- 135

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+T T N  I GLC NG V E +     +      L    + +LI G CK G    A +
Sbjct: 136 -PDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQ 194

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +  K+  K +  +VV YN +I +L K   +     L   M     + DV TF+ L+  F
Sbjct: 195 MLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGF 253



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   + + Y  +N  T+N ++ G C EG   +A  L+ KM   G  P+  T +TLI  L 
Sbjct: 476 FQDLLSKGYS-VNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALF 534

Query: 71  RTGNMNLTLKLHQEMV 86
                    KL +EM+
Sbjct: 535 HKDENEKAEKLLREMI 550


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 173/360 (48%), Gaps = 29/360 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F   I + Y P + VT+NS++ G   + N+ +A ++ KKM   GC PN  T   ++
Sbjct: 206 AMKLFKDVIAKGYMP-DTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVL 264

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +G  R GNM   L+L++EM          + P+V    ++ID LCK + VD    +  EM
Sbjct: 265 SGHCRVGNMARCLELYEEMTEKR------FSPDVLLCNAVIDMLCKAKKVDDAHKVLEEM 318

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G   + +        LCK   + +A+ L   M+  G  P I +Y+ +LNG C   KV
Sbjct: 319 SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKV 378

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + A  LFD M  +  +PDV ++++L++G CK   ++EA            K + + M   
Sbjct: 379 HDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEA------------KDLLDVMSEH 426

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
           NV+P+  TC   + GLC++    E + LF  +        V   N ++ G C+ G    A
Sbjct: 427 NVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQA 486

Query: 299 SELFNKL--SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              F  +  S      DVV Y  L++AL + G++ +       M  +GCA D   +NTLM
Sbjct: 487 LLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLM 546



 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 168/346 (48%), Gaps = 25/346 (7%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P N +T+N+++ G C  G + +A Q    M + G  P+V   + L+  L + G +   
Sbjct: 111 YEPDN-ITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEA 169

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
             L + M   M D      P++  Y +LIDG C+    D+   LF ++  KG   +T+  
Sbjct: 170 WGLFKTM--DMADRK--VAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTY 225

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 L +K+ + EA  + + M+  G  P   TY+ +L+G+C VG +   + L++ M  
Sbjct: 226 NSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTE 285

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           K F PDV   + +I+  CK   V++A             K+  EM     VP+  T NI 
Sbjct: 286 KRFSPDVLLCNAVIDMLCKAKKVDDA------------HKVLEEMSKIGAVPDVVTYNIL 333

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           +DGLCK   V +  ELF T+  + C   +  ++ ++ G CK      A  LF+++  + L
Sbjct: 334 LDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKL 393

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V DVV +NIL+  L K G++ +   LL  M E+    D  T  TLM
Sbjct: 394 VPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLM 439



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 178/365 (48%), Gaps = 39/365 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT++++I G C  G + +A ++V++M   G  P+V T   ++  L R G ++   +L  +
Sbjct: 11  VTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHK 70

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M+            N   Y +LI+GLCKD  +++   L  EM  KG     I  NT+   
Sbjct: 71  MIERG------CSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSG 124

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS--MARKGFM 194
           LC+  K+ EA +  + M  RG +P +  Y  LL+     GKV  A  LF +  MA +   
Sbjct: 125 LCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVA 184

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
           PD+ +Y+ LI+G+C+    +EAM + +++I  G+                       +++
Sbjct: 185 PDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEM 244

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F +M      P   T +I + G C+ G++   +EL+  +        V + N++I   CK
Sbjct: 245 FKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCK 304

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               + A ++  ++S    V DVV YNIL+  L K   + K + L  +M +NGCA D+ +
Sbjct: 305 AKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVS 364

Query: 352 FNTLM 356
           ++ ++
Sbjct: 365 YSVVL 369



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 136/271 (50%), Gaps = 22/271 (8%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           ++P+V  Y ++I GLCK   V +  ++  EM +KG+N +          LC+  K+ EA+
Sbjct: 6   FEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEAD 65

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            L   M++RG +     Y  L+NG C    +  A  L + MA KG+ PD  +Y+ +++G 
Sbjct: 66  ELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGL 125

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C+   V EA            K+ F+ M      P+    N  +D L K G V E   LF
Sbjct: 126 CRMGKVSEA------------KQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLF 173

Query: 268 PTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
            T+++++ ++  ++  +N+LI G C+    + A +LF  +  K  + D V YN ++  L 
Sbjct: 174 KTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLA 233

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++  + +   +   M ++GCA +  T++ ++
Sbjct: 234 RKSNMDEAEEMFKKMVDSGCAPNGATYSIVL 264



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 109/213 (51%), Gaps = 14/213 (6%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M ++G  P + TY+ +++G C  GKV  A+ + + M  KG  PDV +Y+++++  C+   
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           V+EA  +  +MI  G          C+    T   N  I+GLCK+ ++    +L   +  
Sbjct: 61  VDEADELFHKMIERG----------CSA--NTVAYNALINGLCKDENIERAYKLLEEMAS 108

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              E     +N+++ G C+ G    A + F+ +  +    DVVAYN L+ AL KEG++ +
Sbjct: 109 KGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAE 168

Query: 333 ENYLL--LSMEENGCALDVDTFNTLMISFLQKE 363
              L   + M +   A D+ T+NTL+  F + E
Sbjct: 169 AWGLFKTMDMADRKVAPDLITYNTLIDGFCRVE 201



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 92/208 (44%), Gaps = 17/208 (8%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T+KV  A + F   I R   P + VTFN L+ G C  G + +A  L+  M+     P+  
Sbjct: 375 TNKVHDARVLFDRMIERKLVP-DVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGV 433

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           TC TL+ GL R    +  ++L Q MV   G    +   N+     ++ GLC++  + Q  
Sbjct: 434 TCTTLMHGLCRDKRTDEAVRLFQYMVEK-GTVADVLPHNI-----VLAGLCREGKLAQAL 487

Query: 121 DLFMEM-KDKGINANTLLCKKT---KLVEANRL------LELMMQRGLNPVIFTYTPLLN 170
             F  M K  G  +  ++   T    L+EA R+       + M   G  P    Y  L+N
Sbjct: 488 LFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMN 547

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVF 198
           G    G+   A  L  +M  KGF+ D F
Sbjct: 548 GLRKQGRHIQADRLTQAMKEKGFLSDCF 575


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 197/423 (46%), Gaps = 73/423 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A        +  + P + VT  +LIKG C+ G +R+A      +   G   +  +  TLI
Sbjct: 118 AFSVLAKIFKLGFHP-DTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLI 176

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL +TG     L++ ++ ++G+     + +PNV  Y ++ID LCKD+LV    DL  EM
Sbjct: 177 NGLCKTGETRAALQVLRK-IDGL-----LVQPNVVMYNTIIDSLCKDKLVIHASDLCSEM 230

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             K I  + +                                           LCK+ ++
Sbjct: 231 IVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEM 290

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            +A  +L +M+++G++  I TY  L++GY LV + N A  +F++MAR+G  PDV SYS++
Sbjct: 291 KKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIM 350

Query: 204 INGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEMKLCNV 240
           ING CK   V+EA+N+ +EM              +++G  K         + NEM     
Sbjct: 351 INGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQ 410

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
             +  T +  +D LCKN  V + + L   ++    +  +  +  L+ G CK G  + A  
Sbjct: 411 PADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQA 470

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           ++  L  K    DV  YN++++ L KEG   +   L+  ME+NGC  D  T+ TL+ +  
Sbjct: 471 VYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALF 530

Query: 361 QKE 363
           + +
Sbjct: 531 END 533



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 105/219 (47%), Gaps = 12/219 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C    L  A  +L  + + G +P   T T L+ G CL GKV  A+   D +  KGF  D 
Sbjct: 110 CHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQ 169

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY  LING CK      A+ V R+  ++G            V P     N  ID LCK+
Sbjct: 170 VSYGTLINGLCKTGETRAALQVLRK--IDGLL----------VQPNVVMYNTIIDSLCKD 217

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V+   +L   + +      V  + +LI GC   G  + A  LFN++  KN+  DV  +
Sbjct: 218 KLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTF 277

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           NIL+  L KEG++KK   +L  M + G   ++ T+N+LM
Sbjct: 278 NILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLM 316


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 175/347 (50%), Gaps = 30/347 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLI G C      +A  L+++M   GC P++ T  TLITG  ++   +  L++ ++
Sbjct: 55  VTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQ 114

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTLL- 137
           +V         ++P+V  Y  LIDGLCK+  + +  DLF  M   G      +  N+L+ 
Sbjct: 115 LV------ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 168

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             C+  K+ EA  LLE M + G +P + TYT L+NG+C + +++ A  L + M RKG  P
Sbjct: 169 GFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTP 228

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           +V +++ L++G C+   + +A++            I  EM+  +  P  +T N  +DG C
Sbjct: 229 NVVTFTSLMDGLCRENRLSDAVH------------ILGEMRRKSCSPTVYTYNTILDGYC 276

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           +   + E  +    LE  +C   V  FN +IRG CK      A EL  +   +    DVV
Sbjct: 277 RVNQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVV 334

Query: 316 AYNILIHALGKEGQIKKENYLLLSM-EENGCALDVDTFNTLMISFLQ 361
            Y  +I  L +E ++ +   +   M EE GC  +  T++T     LQ
Sbjct: 335 MYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYSTFDYWPLQ 381



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 38/262 (14%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRG 157
           P    Y SLI GLC                           K  +  EA  LLE M+  G
Sbjct: 52  PTAVTYNSLISGLC---------------------------KAERASEAYDLLEEMVYSG 84

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
             P IFTYT L+ G+C   K + A+ +F+ +  +GF PDV +YS LI+G CK   ++EA+
Sbjct: 85  CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAI 144

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           ++   MI +G           + +P T T N  I G C+ G + E M L   +  +    
Sbjct: 145 DLFGRMIKSG-----------SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 193

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  + +L+ G CK    + A +L N+++ K L  +VV +  L+  L +E ++    ++L
Sbjct: 194 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHIL 253

Query: 338 LSMEENGCALDVDTFNTLMISF 359
             M    C+  V T+NT++  +
Sbjct: 254 GEMRRKSCSPTVYTYNTILDGY 275



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 16/226 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  FG  I+      N VT+NSLI GFC  G + +A  L+++MA  G  P+V T  TL+
Sbjct: 143 AIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLM 202

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  +   ++    L  +M        G+  PNV  + SL+DGLC++  +     +  EM
Sbjct: 203 NGFCKLARLDDAYDLLNQMTR-----KGL-TPNVVTFTSLMDGLCRENRLSDAVHILGEM 256

Query: 127 KDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           + K  +      NT+L   C+  +L EA +   ++ +    P + ++  ++ G C V + 
Sbjct: 257 RRKSCSPTVYTYNTILDGYCRVNQLEEARKF--MLEEMDCPPNVVSFNIMIRGLCKVNRS 314

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           + A+ L +   R+   PDV  Y+ +I+  C+   V+EA  V R+M+
Sbjct: 315 SEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKML 360



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 13/167 (7%)

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P   +Y+ LI+G CK     EA ++  EM+ +G             +P+ FT    I G
Sbjct: 51  VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSG------------CIPDIFTYTTLITG 98

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL-SCKNLVA 312
            CK+    + + +F  L        V  ++ LI G CK G  + A +LF ++    + + 
Sbjct: 99  FCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMP 158

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + V YN LI    + G++ +   LL  M E G + DV T+ TLM  F
Sbjct: 159 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGF 205


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/354 (33%), Positives = 182/354 (51%), Gaps = 29/354 (8%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R+   P + V++N+LI G C    +++A  L+ +M   GC PN  TC TL+ GL + G M
Sbjct: 26  RKSVSP-DIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRM 84

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           +  +    E++  M   G  +  +V  YG+LI G C +  +D+ K+LF EM  KGI+AN 
Sbjct: 85  DEAM----ELLEAMKKKG--FDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANV 138

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +        LC+  +  EAN +L  M + G++P + TYT L++G C  G+   A+ L + 
Sbjct: 139 VTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNL 198

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  KG  P   +Y+VL++G CK   V +A  + R MI  G K             +  T 
Sbjct: 199 MVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKK------------ADVVTY 246

Query: 248 NIFIDGLCKNGHVLEVMELFPTL-EISNC-ELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           N  + GLC  G V E ++LF ++ +  NC E  V  FN LI G CK G    A ++  K+
Sbjct: 247 NTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKM 306

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             K    ++V YN+L+    K G+IK+   L   + + G   +  T++ L+  F
Sbjct: 307 VKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGF 360



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 179/406 (44%), Gaps = 74/406 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V + +LI GFC  GN+    +L  +M   G   NV T   L+ GL R G      K    
Sbjct: 104 VLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQW----KEANT 159

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
           ++N M + G    P+V  Y  LIDGLCKD       DL   M +KG     +  N LL  
Sbjct: 160 VLNAMAEHG--IHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSG 217

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM--ARKGFM 194
            CK+  +++A ++L +M+++G    + TY  L+ G C  GKV+ A+ LF+SM        
Sbjct: 218 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLE 277

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------FKKIFNEMKL 237
           P+VF++++LI G CK   + +A+ + R+M+  G                   KI   M+L
Sbjct: 278 PNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 337

Query: 238 CN------VVPETFTCNIFIDG-----------------------------------LCK 256
                    VP +FT +I IDG                                   LCK
Sbjct: 338 WKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCK 397

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + +   LF  +  +NCE  +  FN++I G  K G F+   EL  K+    L  D + 
Sbjct: 398 EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALT 457

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           ++ LI+ L K G++ +    L  M  +G   D   +++L+     K
Sbjct: 458 FSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSK 503



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 181/397 (45%), Gaps = 64/397 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT  +L+ G C +G + +A +L++ M   G   +V    TLI+G    GN++   +L 
Sbjct: 67  NSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELF 126

Query: 83  QEM---------------VNGMGDFG---------------GIYKPNVFCYGSLIDGLCK 112
            EM               V+G+   G               GI+ P+V  Y  LIDGLCK
Sbjct: 127 DEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIH-PDVVTYTGLIDGLCK 185

Query: 113 DRLVDQTKDLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFT 164
           D       DL   M +KG     +  N L   LCK+  +++A ++L +M+++G    + T
Sbjct: 186 DGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVT 245

Query: 165 YTPLLNGYCLVGKVNVAIALFDSM--ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
           Y  L+ G C  GKV+ A+ LF+SM        P+VF++++LI G CK   + +A+ + R+
Sbjct: 246 YNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRK 305

Query: 223 MILNG-----------------FKKIFNEMKLC------NVVPETFTCNIFIDGLCKNGH 259
           M+  G                   KI   M+L         VP +FT +I IDG CK   
Sbjct: 306 MVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRM 365

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +     LF  +        +  +N+L+   CK G  E A  LF ++   N   D++++N 
Sbjct: 366 LNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNT 425

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +I    K G  +    L + M E G   D  TF+TL+
Sbjct: 426 MIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLI 462



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 12/189 (6%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +L G C  G V  A+ L   M RK   PD+ SY+ LING CK   ++EA+          
Sbjct: 4   VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVG--------- 54

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
              +  EM+     P + TC   +DGLCK+G + E MEL   ++    +  V ++ +LI 
Sbjct: 55  ---LLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLIS 111

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C  G  +   ELF+++  K + A+VV Y+ L+H L + GQ K+ N +L +M E+G   
Sbjct: 112 GFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHP 171

Query: 348 DVDTFNTLM 356
           DV T+  L+
Sbjct: 172 DVVTYTGLI 180



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 124/265 (46%), Gaps = 20/265 (7%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL---LCKKTKLVEANRLLELMMQRG 157
           ++ GLC++  V +   L  EM  K ++      NTL   LCK  KL EA  LL  M   G
Sbjct: 4   VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAG 63

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
             P   T T L++G C  G+++ A+ L ++M +KGF  DV  Y  LI+G+C N N++   
Sbjct: 64  CFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGK 123

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            +  EM+  G           NVV  T++C   + GLC+ G   E   +   +       
Sbjct: 124 ELFDEMLGKGIS--------ANVV--TYSC--LVHGLCRLGQWKEANTVLNAMAEHGIHP 171

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  +  LI G CK G    A +L N +  K      V YN+L+  L KEG +     +L
Sbjct: 172 DVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKIL 231

Query: 338 LSMEENGCALDVDTFNTLMISFLQK 362
             M E G   DV T+NTLM     K
Sbjct: 232 RMMIEKGKKADVVTYNTLMKGLCDK 256



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 143/335 (42%), Gaps = 72/335 (21%)

Query: 3   KVLGALMAFGSFI--RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           KV  AL  F S      C  P N  TFN LI G C EG +  A ++ +KM   G   N+ 
Sbjct: 258 KVDEALKLFNSMFDNENCLEP-NVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLV 316

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T + L+ G  + G +   ++L ++++    D G  + PN F Y  LIDG CK R+++  K
Sbjct: 317 TYNMLLGGCLKAGKIKEAMELWKQVL----DLG--FVPNSFTYSILIDGFCKMRMLNIAK 370

Query: 121 DLFMEMKDKGINA-----NTL---LCKKTKLVEANRLLE--------------------- 151
            LF EM+  G+N      NTL   LCK+  L +A  L +                     
Sbjct: 371 GLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGT 430

Query: 152 --------------LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
                          M++ GL P   T++ L+N    +G+++ A +  + M   GF PD 
Sbjct: 431 LKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDA 490

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             Y  L+ G     +  E +N+  +M   G   + +      +V    TC      LC +
Sbjct: 491 LVYDSLLKGLSSKGDTTEIINLLHQMAAKG--TVLDR----KIVSTILTC------LCHS 538

Query: 258 GHVLEVMELFPTL--------EISNCELFVEIFNS 284
              ++VMEL PT          IS  EL +++  S
Sbjct: 539 IQEVDVMELLPTFFQGTSEGASISCNELLMQLHQS 573



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%)

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           NI + GLC+NG V E M L   +   +    +  +N+LI G CK    + A  L  ++  
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
                + V    L+  L K+G++ +   LL +M++ G   DV  + TL+  F
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGF 113


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 27/342 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
            G  ++  Y+P + +T N+L+KG C++G ++ +     K+   G + N  +  TL+ GL 
Sbjct: 123 LGKILKLGYQP-DTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLC 181

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G     +KL + M+          +P+V  Y ++IDGLCKD++V+Q  D F EM  +G
Sbjct: 182 KIGETRCAVKLLR-MIEDRST-----RPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARG 235

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           I  N +         C   +L+ A  LL  M+ + +NP ++TY  L++  C  GKV  A 
Sbjct: 236 IFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAK 295

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            L   M  KG   DV +Y+ +++G CK+ N+++A              +F +MK   + P
Sbjct: 296 KLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKAT------------ALFMKMKKWGIQP 343

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
             +T    IDGLCK G +    +LF  L +  C + V  +N +I G CK G+F+ A  + 
Sbjct: 344 NKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMK 403

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +K+     + + V ++I+I +L ++ +  K   LL  M   G
Sbjct: 404 SKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKG 445



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 157/341 (46%), Gaps = 46/341 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT N LI  FC  G +  +  ++ K+   G +P+  T +TL+ GL   G +  +L  H
Sbjct: 99  NLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFH 158

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            ++V   G     ++ N   YG+L++GLCK   + +T+                 C    
Sbjct: 159 DKVV-AQG-----FQMNQVSYGTLLNGLCK---IGETR-----------------C---- 188

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
              A +LL ++  R   P +  Y+ +++G C    VN A   F  M  +G  P+V +YS 
Sbjct: 189 ---AVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYST 245

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI G+C    +  A ++  EMIL             N+ P  +T NI ID LCK G V E
Sbjct: 246 LIWGFCLAGQLMGAFSLLNEMILK------------NINPNVYTYNILIDALCKEGKVKE 293

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             +L   +        V  +NS++ G CK    + A+ LF K+    +  +   Y  LI 
Sbjct: 294 AKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALID 353

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            L K G++K    L   +   GC +DV T+N +MIS L KE
Sbjct: 354 GLCKGGRLKNAQKLFQHLLVKGCCIDVRTYN-VMISGLCKE 393



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 111/243 (45%), Gaps = 23/243 (9%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K      A  L   M  +G+ P + T   L+N +C +G++  + ++   + + G+ PD
Sbjct: 75  LVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPD 134

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
             + + L+ G C    V+ +++   +++  GF+                       K+  
Sbjct: 135 TITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLR 194

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            ++  +  P+    +  IDGLCK+  V +  + F  +        V  +++LI G C  G
Sbjct: 195 MIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAG 254

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A  L N++  KN+  +V  YNILI AL KEG++K+   LL  M   G   DV T+N
Sbjct: 255 QLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYN 314

Query: 354 TLM 356
           +++
Sbjct: 315 SVL 317


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 184/391 (47%), Gaps = 39/391 (9%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMAT-FGCRPNVTTCD 63
           +G + A      R  +P   V FN+LI GF   G + DA  ++  M T +G  P+V T +
Sbjct: 335 IGRVDAAKDLFYRIPKP-EIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 393

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           +LI G  + G + L L++  +M N         KPNV+ Y  L+DG CK   +D+  ++ 
Sbjct: 394 SLIYGYWKEGLVGLALEVLHDMRNKGC------KPNVYSYTILVDGFCKLGKIDEAYNVL 447

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EM   G+  NT+         CK+ ++ EA  +   M ++G  P ++T+  L++G C V
Sbjct: 448 NEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEV 507

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-------- 227
            ++  A+ L   M  +G + +  +Y+ LIN + +   ++EA  +  EM+  G        
Sbjct: 508 DEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITY 567

Query: 228 ---------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                           + +F +M      P   +CNI I+GLC++G V E +E    + +
Sbjct: 568 NSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVL 627

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 +  FNSLI G C+ G  E    +F KL  + +  D V +N L+  L K G +  
Sbjct: 628 RGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYD 687

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              LL    E+G   +  T++ L+ S + +E
Sbjct: 688 ACLLLDEGIEDGFVPNHRTWSILLQSIIPQE 718



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 174/370 (47%), Gaps = 46/370 (12%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P    TF  ++K FC    I  A  L++ M   GC PN     TLI  L +   +N  L+
Sbjct: 214 PPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQ 273

Query: 81  LHQEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLC 111
           L +EM               + G+  F  I              + P+   YG L++GLC
Sbjct: 274 LLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLC 333

Query: 112 KDRLVDQTKDLFMEM-KDKGINANTLL---CKKTKLVEANRLL-ELMMQRGLNPVIFTYT 166
           K   VD  KDLF  + K + +  NTL+       +L +A  +L +++   G+ P + TY 
Sbjct: 334 KIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 393

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            L+ GY   G V +A+ +   M  KG  P+V+SY++L++G+CK   ++EA NV  EM  +
Sbjct: 394 SLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD 453

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
           G K            P T   N  I   CK   + E +E+F  +    C+  V  FNSLI
Sbjct: 454 GLK------------PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLI 501

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G C+    + A  L   +  + +VA+ V YN LI+A  + G+IK+   L+  M   G  
Sbjct: 502 SGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSP 561

Query: 347 LDVDTFNTLM 356
           LD  T+N+L+
Sbjct: 562 LDEITYNSLI 571



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 131/308 (42%), Gaps = 47/308 (15%)

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD--------KGINA--NTLLC 138
           M D G ++K ++F   S++    K     QT  L +EM++        K  N     L+ 
Sbjct: 137 MKDEGIVFKESLFI--SIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVS 194

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
                V AN   + M+ R + P +FT+  ++  +C V +++ A++L   M + G +P+  
Sbjct: 195 GNCHKVAANVFYD-MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSV 253

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMIL-----------------------NGFKKIFNEM 235
            Y  LI+   K   V EA+ +  EM L                       N   K+ N M
Sbjct: 254 IYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRM 313

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELF---PTLEISNCELFVEIFNSLIRGCCKF 292
            +    P+  T    ++GLCK G V    +LF   P  EI        IFN+LI G    
Sbjct: 314 LIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIV-------IFNTLIHGFVTH 366

Query: 293 GIFEIASELFNKL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           G  + A  + + + +   +V DV  YN LI+   KEG +     +L  M   GC  +V +
Sbjct: 367 GRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYS 426

Query: 352 FNTLMISF 359
           +  L+  F
Sbjct: 427 YTILVDGF 434


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 176/366 (48%), Gaps = 40/366 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATF---GCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           V++N+L+KGFC E    +A +L+  MA      C PNV +  T+I G    G ++    L
Sbjct: 166 VSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNL 225

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TLLC- 138
             EM++      GI +PNV  Y ++IDGLCK ++VD+ + +F +M DKG+  +  T  C 
Sbjct: 226 FLEMMDR-----GI-QPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCL 279

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                   K  E  R+LE M   GL P  +TY  LLN  C  G+   A   FDSM RKG 
Sbjct: 280 IHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGI 339

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
            P+V  Y +LI+GY     + E  ++   M+ NG                          
Sbjct: 340 KPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMH 399

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           IFN+MK   + P+       ID LCK G V + +  F  +        + +FNSL+ G C
Sbjct: 400 IFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLC 459

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
               +E A E + ++  + +  DVV +N ++  L  +GQ+ K   L+  ME  G   DV 
Sbjct: 460 TVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVI 519

Query: 351 TFNTLM 356
           ++ TL+
Sbjct: 520 SYTTLI 525



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 181/368 (49%), Gaps = 39/368 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-LTLKLHQEM 85
           FN +   +  +  I +A  +  KM   G  P+V     LI  L + G ++   LK +Q M
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMM 440

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
             G+        PN+F + SL+ GLC     ++ K+ + EM ++GI  + +        L
Sbjct: 441 NEGVA-------PNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNL 493

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C K ++++A RL++LM + G  P + +YT L+ G+CLVG+++ A    D M   G  PD 
Sbjct: 494 CTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDE 553

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF----------------KKIFNEMK--LCN 239
           ++Y+ L++GYC+   +++A  V REM+ NG                  + F+E K    N
Sbjct: 554 WTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLN 613

Query: 240 VVPETFTCNIFI-----DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           ++      NI+I     +GL KN  V E  +LF +L   + +L +  FN +I    K G 
Sbjct: 614 MITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGR 673

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A  LF  +S   LV DV  Y ++   L +EG +++ + L  +ME++G   +    N 
Sbjct: 674 NEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNA 733

Query: 355 LMISFLQK 362
           L+   L +
Sbjct: 734 LVRRLLHR 741



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 157/369 (42%), Gaps = 48/369 (13%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDA---SQLVKKM-------ATFGCRPNVTTCDTLITGL 69
           RP + + FN L+         R +   S+LV  +        T    P++ T   LI   
Sbjct: 45  RPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVTPDLCTYSILIGCF 104

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            R G +           +G   FG I    ++ N      L+ GLC  + + +  D+ ++
Sbjct: 105 CRMGRLE----------HGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIK 154

Query: 126 -MKDKG-----INANTLL---CKKTKLVEANRLLELMMQ---RGLNPVIFTYTPLLNGYC 173
            M + G     ++ NTLL   C + +  EA  LL +M     R   P + +Y  ++NG+ 
Sbjct: 155 RMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFF 214

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G+V+ A  LF  M  +G  P+V +Y+ +I+G CK   V+ A  V ++MI  G K    
Sbjct: 215 TEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVK---- 270

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+  T N  I G    G   EV+ +   +     +     + SL+   C  G
Sbjct: 271 --------PDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNG 322

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A   F+ +  K +  +V  Y ILIH    +G + + + LL  M ENG + D   FN
Sbjct: 323 RCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFN 382

Query: 354 TLMISFLQK 362
            +  ++ +K
Sbjct: 383 IIFTAYAKK 391



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 139/317 (43%), Gaps = 29/317 (9%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP + V FN+++   C +G +  A +L+  M   G RP+V +  TLI G    G ++   
Sbjct: 480 RP-DVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAA 538

Query: 80  KLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           K    M++ G+       KP+ + Y +L+ G C+   +D    +F EM   GI    +  
Sbjct: 539 KSLDVMLSVGL-------KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTY 591

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 L    +  EA  L   M+  G    I+ Y  +LNG      V+ A  LF S+  
Sbjct: 592 STILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCS 651

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           K F  ++ +++++I    K+   E+AM+            +F  +    +VP+ FT  + 
Sbjct: 652 KDFQLEITTFNIMIGALFKSGRNEDAMH------------LFATISSYGLVPDVFTYCLI 699

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
            + L + G++ E  +LF  +E S       + N+L+R     G    A    +KL  KN 
Sbjct: 700 AENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNF 759

Query: 311 VADVVAYNILIHALGKE 327
             +     +LI  L ++
Sbjct: 760 SLEASTTAMLISLLSRD 776


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 179/371 (48%), Gaps = 44/371 (11%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           LG +M  G      + P + VTF SL+ G+C    I DA  L  ++   G +PNV T  T
Sbjct: 141 LGKMMKLG------FEP-DLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTT 193

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           LI  L +  ++N  +    E+ N MG  G   +PNV  Y +L+ GLC+         L  
Sbjct: 194 LIRCLCKNRHLNHAV----ELFNQMGTNGS--RPNVVTYNALVTGLCEIGRWGDAAWLLR 247

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           +M  + I  N +          K  KL+EA  L  +M+Q  + P +FTY  L+NG C+ G
Sbjct: 248 DMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYG 307

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------------- 223
            ++ A  +F  M R G  P+   Y+ LI+G+CK+  VE+ M +  EM             
Sbjct: 308 LLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYT 367

Query: 224 -ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
            ++ G+         +++FN+M      P+  T N+ +DGLC NG V + + +F  +   
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKR 427

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             ++ +  +  +I+G CK G  E A +LF  L  K +  +V+ Y  +I    + G I + 
Sbjct: 428 EMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEA 487

Query: 334 NYLLLSMEENG 344
           + L   M+E+G
Sbjct: 488 DSLFKKMKEDG 498



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 146/331 (44%), Gaps = 45/331 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T N ++   C+      AS  + KM   G  P++ T  +L+ G      +   + L  ++
Sbjct: 120 TCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQI 179

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           + GMG     +KPNV  Y +LI  LCK+R ++   +LF +M   G N             
Sbjct: 180 L-GMG-----FKPNVVTYTTLIRCLCKNRHLNHAVELFNQM---GTN------------- 217

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
                      G  P + TY  L+ G C +G+   A  L   M ++   P+V +++ LI+
Sbjct: 218 -----------GSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALID 266

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
            + K   + EA            K+++N M   +V P+ FT    I+GLC  G + E  +
Sbjct: 267 AFVKVGKLMEA------------KELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQ 314

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +F  +E + C     I+ +LI G CK    E   ++F ++S K +VA+ + Y +LI    
Sbjct: 315 MFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYC 374

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             G+      +   M       D+ T+N L+
Sbjct: 375 LVGRPDVAQEVFNQMSSRRAPPDIRTYNVLL 405



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 149/353 (42%), Gaps = 35/353 (9%)

Query: 27  FNSLIKGFCMEG--------NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           F S++KGF +          N R A+ L      F  R   +    L  GL      N  
Sbjct: 9   FASIVKGFHLHSHRHRLQISNPRTAASLSLCGFCFWIRAFSSYRKILRNGLHNL-QFNDA 67

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NA 133
           L L   MV+          P++  +  L+  + K    D    LF +M+  GI       
Sbjct: 68  LDLFTRMVHSRP------LPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTC 121

Query: 134 NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           N ++   C  ++   A+  L  MM+ G  P + T+T LLNGYC   ++  AIALFD +  
Sbjct: 122 NIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILG 181

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            GF P+V +Y+ LI   CKN ++  A+ +  +M  NG +            P   T N  
Sbjct: 182 MGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSR------------PNVVTYNAL 229

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           + GLC+ G   +   L   +     E  V  F +LI    K G    A EL+N +   ++
Sbjct: 230 VTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSV 289

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             DV  Y  LI+ L   G + +   +   ME NGC  +   + TL+  F + +
Sbjct: 290 YPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSK 342



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 123/282 (43%), Gaps = 75/282 (26%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM---- 75
           RP N VT+N+L+ G C  G   DA+ L++ M      PNV T   LI    + G +    
Sbjct: 220 RP-NVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAK 278

Query: 76  ---NLTLKL--------HQEMVNGMGDFG---------------GIYKPNVFCYGSLIDG 109
              N+ +++        +  ++NG+  +G               G Y PN   Y +LI G
Sbjct: 279 ELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCY-PNEVIYTTLIHG 337

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTL--------------------------------- 136
            CK + V+    +F EM  KG+ ANT+                                 
Sbjct: 338 FCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPD 397

Query: 137 ----------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                     LC   K+ +A  + E M +R ++  I TYT ++ G C +GKV  A  LF 
Sbjct: 398 IRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFC 457

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           S+  KG  P+V +Y+ +I+G+C+   + EA ++ ++M  +GF
Sbjct: 458 SLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGF 499



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 16/191 (8%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           CY   N+V + +LI GFC    + D  ++  +M+  G   N  T   LI G    G  ++
Sbjct: 324 CYP--NEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDV 381

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
                QE+ N M        P++  Y  L+DGLC +  V++   +F  M+ + ++ N + 
Sbjct: 382 A----QEVFNQMSSRRA--PPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVT 435

Query: 137 -------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                  +CK  K+ +A  L   +  +G+ P + TYT +++G+C  G ++ A +LF  M 
Sbjct: 436 YTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMK 495

Query: 190 RKGFMPDVFSY 200
             GF+P+   Y
Sbjct: 496 EDGFLPNESVY 506



 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  ALM F  ++R+    +N VT+  +I+G C  G + DA  L   + + G +PNV T 
Sbjct: 413 KVEKALMIF-EYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITY 471

Query: 63  DTLITGLRRTGNMNLTLKLHQEM 85
            T+I+G  R G ++    L ++M
Sbjct: 472 TTMISGFCRRGLIHEADSLFKKM 494


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 47/372 (12%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V+G +M FG      Y P + VT +SLI GFC    +  A  LV KM    C+ +V   +
Sbjct: 126 VVGKMMKFG------YEP-DVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYN 178

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           T+I G  +TG +N  L L   M     +  G+ + +   Y SL+ GLC          L 
Sbjct: 179 TIIDGFCKTGLVNNALVLFGRM-----ERDGV-RADTVTYNSLVTGLCCSGRRSDAARLM 232

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            +M  + I  N +          ++ K +EA +  E M++R ++P +FTY  +++G C+ 
Sbjct: 233 RDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMH 292

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------------ 223
           G+V+ A  + D M  KG  PDV +Y+ LING+CK   V+E   + REM            
Sbjct: 293 GQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTF 352

Query: 224 --ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
             I+ G+         ++IF+ M      P   T +I + GLC N  V + + LF +++ 
Sbjct: 353 NTIIQGYFQAGRPDAAQEIFSRM---GSRPNIRTYSILLYGLCYNWRVEKALVLFESMQK 409

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           S  EL +  +N +I G C  G  E A +LF  LS K L  DVV Y  +I    ++    K
Sbjct: 410 SEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDK 469

Query: 333 ENYLLLSMEENG 344
            ++L   M+E+G
Sbjct: 470 ADFLYRKMQEDG 481



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 145/343 (42%), Gaps = 46/343 (13%)

Query: 20  RPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           RPL   V F+ L+       N      L   M   G   ++ T + +I  L R     + 
Sbjct: 64  RPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIA 123

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138
           L +    V  M  FG  Y+P+V    SLI+G C+   V    DL  +M++       + C
Sbjct: 124 LSV----VGKMMKFG--YEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEE-------MRC 170

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K                  L+ VI  Y  +++G+C  G VN A+ LF  M R G   D  
Sbjct: 171 K------------------LDVVI--YNTIIDGFCKTGLVNNALVLFGRMERDGVRADTV 210

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y+ L+ G C +    +A  + R+M++             ++VP   T    I+   + G
Sbjct: 211 TYNSLVTGLCCSGRRSDAARLMRDMVMR------------DIVPNVITFTALINAFVREG 258

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
             LE  + +  +     +  V  +NS+I G C  G  + A ++ + +  K    DVV YN
Sbjct: 259 KFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYN 318

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            LI+   K  ++ +   L+  M + G  +D  TFNT++  + Q
Sbjct: 319 TLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQ 361



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 37/228 (16%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           K L A   +   IRRC  P  DV T+NS+I G CM G + +A Q++  M T GC P+V T
Sbjct: 259 KFLEAKKFYEEMIRRCIDP--DVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVT 316

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGI----------- 95
            +TLI G  +T  ++   KL +EM               + G    G             
Sbjct: 317 YNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRMG 376

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
            +PN+  Y  L+ GLC +  V++   LF  M+   +  +          +C    + +A 
Sbjct: 377 SRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAW 436

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            L   +  +GL P + TYT +++G+C     + A  L+  M   G +P
Sbjct: 437 DLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDGLLP 484



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 12/220 (5%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L EA  L   M+Q    P I  ++ LL+        ++ I+LF +M   G   D+++Y++
Sbjct: 50  LDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNI 109

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           +IN  C+      A++V  +M+  G++            P+  T +  I+G C+   V  
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYE------------PDVVTVSSLINGFCQGNRVFG 157

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            ++L   +E   C+L V I+N++I G CK G+   A  LF ++    + AD V YN L+ 
Sbjct: 158 AVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVT 217

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            L   G+      L+  M       +V TF  L+ +F+++
Sbjct: 218 GLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVRE 257


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 192/413 (46%), Gaps = 63/413 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
            L   G   R  + P N V +N+LI  FC EG   DA +LV +M   G  P+V T +  I
Sbjct: 110 GLELLGEMRRLGFSP-NKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARI 168

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           + L  +G +    ++ ++M   + +  G+ +PN+  Y  ++ G CK+ ++++ + LF +M
Sbjct: 169 SALCSSGKVLEASRIFRDMQ--IDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKM 226

Query: 127 KDKGINANTL-----------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
           K   ++ N +           L +  KL+EA  +L+ M+  G+ P +++Y  +++G C  
Sbjct: 227 K---VSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKN 283

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-------- 227
           G +  A  L   M   G +PD  +Y+ L++GYC    V EA NV REM+ +G        
Sbjct: 284 GVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTC 343

Query: 228 ---------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                           +++  +M     V +T TCNI IDGLC NG + + +E+   +  
Sbjct: 344 NILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWT 403

Query: 273 SNCELFVEIFNS-----------------------LIRGCCKFGIFEIASELFNKLSCKN 309
                   + NS                       +I G CK G    A + F ++  KN
Sbjct: 404 HGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKN 463

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           L  D   Y++ IH+  KEG+I     +L  ME+ GC   + T+N+L++    K
Sbjct: 464 LQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSK 516



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 127/271 (46%), Gaps = 24/271 (8%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRL 149
           P+++ Y  L+    K+  VD    L  +M   G++  T        LLC    L +A  L
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            + M ++G  P  +++  L+ GYC  G  +  + L   M R GF P+   Y+ LI+ +CK
Sbjct: 79  FDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCK 138

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
               ++A            +K+ +EM+   + P+  T N  I  LC +G VLE   +F  
Sbjct: 139 EGKTDDA------------EKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRD 186

Query: 270 LEISNC----ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           ++I       +  +  +N ++ G CK G+ E A  LF K+     + +  +YNI +  L 
Sbjct: 187 MQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLV 246

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + G++ +   +L  M + G   +V ++N +M
Sbjct: 247 RIGKLLEAQLVLKEMVDMGMEPNVYSYNIVM 277



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 171/417 (41%), Gaps = 112/417 (26%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+ +L+ G+C  G + +A+ ++++M   GC PN  TC+ L+  L + G ++   +L 
Sbjct: 304 DTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELL 363

Query: 83  Q-------------------------------EMVNGM--------GDFGGIY------- 96
           Q                               E+VNGM        G+ G  Y       
Sbjct: 364 QKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDS 423

Query: 97  ------KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTK 142
                  P++  Y ++I GLCK   V + K  F+EM  K +  ++ +        CK+ K
Sbjct: 424 DSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGK 483

Query: 143 LVEANR-----------------------------------LLELMMQRGLNPVIFTYTP 167
           +  A R                                   L++ M +RG++P +  Y  
Sbjct: 484 ISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNN 543

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN- 226
           +L+  C  G+V  A ++ D M +KG  P++ S+S+LI  +CK  +   A++   E+ LN 
Sbjct: 544 VLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDF-SAVDEIFEIALNV 602

Query: 227 -GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
            G K+             + T N  + G    G V++  ELF T    + ++   ++  L
Sbjct: 603 CGHKEALY----------SLTFNELLVG----GEVVKAKELFETALDRSFDVGNFLYKDL 648

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           I   CK    + AS + +KL  K    D  ++  +I  LGK G   + + L   M E
Sbjct: 649 IDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKMME 705



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 51/121 (42%)

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P  +  N+ +    K G V  V  L   +  S        FN LI   C  G  + A EL
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           F+K+  K    +  ++ IL+    + G   K   LL  M   G + +   +NTL+ SF +
Sbjct: 79  FDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCK 138

Query: 362 K 362
           +
Sbjct: 139 E 139


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 174/342 (50%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++NS+I G C +G + +  +LV++M   G  P+  T +TL+ G  + GN++  L L 
Sbjct: 276 NLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLL 335

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL 137
            EMV      G    PNV  Y +LI+ +CK   + +  ++F +M+ +G+  N     TL+
Sbjct: 336 SEMV------GKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLI 389

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+K  + EA ++L  M+  G +P + TY  L++GYC +G+V  A+ +   M  +G  
Sbjct: 390 DGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLP 449

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV SYS +I G+C+   + +A  +  EM+  G            V+P+T T +  I GL
Sbjct: 450 PDVVSYSTVIAGFCRERELGKAFQMKEEMVEKG------------VLPDTVTYSSLIQGL 497

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C    ++E  +LF  +           + SLI   C  G    A  L +++  +  + D 
Sbjct: 498 CLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDN 557

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V Y++LI+ L K+ + K    LLL +       D  T+NTL+
Sbjct: 558 VTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLI 599



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 170/345 (49%), Gaps = 42/345 (12%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F     R  RP N+ T+ +LI GFC +G + +A +++ +M   G  P+V T + L+
Sbjct: 366 AVEIFDQMRVRGLRP-NERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALV 424

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G    G +   + +    + GM + G    P+V  Y ++I G C++R + +   +  EM
Sbjct: 425 HGYCFLGRVQEAVGI----LRGMVERG--LPPDVVSYSTVIAGFCRERELGKAFQMKEEM 478

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            +KG+  +T+        LC + KLVEA  L   MM+RGL P   TYT L+N YC+ G++
Sbjct: 479 VEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGEL 538

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + A+ L D M ++GF+PD  +YSVLING     N +    V++ ++L    K+F E    
Sbjct: 539 SKALRLHDEMVQRGFLPDNVTYSVLING----LNKKARTKVAKRLLL----KLFYE---- 586

Query: 239 NVVPETFTCNIFID---------------GLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
             VP+  T N  I+               G C  G + E   +F T+   N +    I+N
Sbjct: 587 ESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYN 646

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +I G  + G    A  L+ +L   +     VA   L+ AL +EG
Sbjct: 647 LMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREG 691



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 169/357 (47%), Gaps = 27/357 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   +R    P N  T+N +I+G   +G++      ++KM   G  PNV T +TLI    
Sbjct: 195 FRDMVRNGVSP-NVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASC 253

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           +   +   + L + M       GG+   N+  Y S+I+GLC    + +  +L  EM+ KG
Sbjct: 254 KKKKVKEAMALLRAMA-----VGGV-AANLISYNSVINGLCGKGRMSEVGELVEEMRGKG 307

Query: 131 -----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                +  NTL+   CK+  L +   LL  M+ +GL+P + TYT L+N  C  G ++ A+
Sbjct: 308 LVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAV 367

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            +FD M  +G  P+  +Y+ LI+G+C+   + EA  V  EMI++GF             P
Sbjct: 368 EIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFS------------P 415

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              T N  + G C  G V E + +   +        V  ++++I G C+      A ++ 
Sbjct: 416 SVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMK 475

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            ++  K ++ D V Y+ LI  L  + ++ +   L   M   G   D  T+ +L+ ++
Sbjct: 476 EEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAY 532



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 160/355 (45%), Gaps = 30/355 (8%)

Query: 18  CYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           C  P +    F+ ++K     G +  A  L+      G  P V + + ++  L R  + N
Sbjct: 125 CSSPFSSSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSN 184

Query: 77  LTLKLHQEMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
                H++  +    F  + +    PNV+ Y  +I G+     +++      +M+ +GI+
Sbjct: 185 -----HRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGIS 239

Query: 133 ANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            N +         CKK K+ EA  LL  M   G+   + +Y  ++NG C  G+++    L
Sbjct: 240 PNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGEL 299

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
            + M  KG +PD  +Y+ L+NG+CK  N+ + + +  EM+  G              P  
Sbjct: 300 VEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLS------------PNV 347

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T    I+ +CK G++   +E+F  + +         + +LI G C+ G+   A ++ ++
Sbjct: 348 VTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSE 407

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +        VV YN L+H     G++++   +L  M E G   DV +++T++  F
Sbjct: 408 MIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGF 462


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 172/346 (49%), Gaps = 27/346 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V FN+++ G+C  G+I  A   ++KM   G RPN  T ++L+       NM    K  ++
Sbjct: 393 VFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKK 452

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV       G+  PNV  Y +LIDG  +  L D+   +  EM+ KG+  N +        
Sbjct: 453 MVEK-----GVL-PNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINC 506

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   ++EA  +L  M+ RG+ P    Y  L++G C+ GK+  A   FD M  +  +P 
Sbjct: 507 LCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPT 566

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y++LING CK   V EA N++ E+   G               +  T N  I G   
Sbjct: 567 LVTYNILINGLCKKGKVMEAENLASEITRKGLSF------------DVITYNSLISGYSS 614

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G+V + +EL+ T++ S  +  +  ++ LI GC K G+  +  +++ ++   NLV D V 
Sbjct: 615 AGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLV-LVEKIYQEMLQMNLVPDRVI 673

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           YN LIH   + G ++K   L  +ME  G   D  T+N L++   ++
Sbjct: 674 YNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKE 719



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 179/381 (46%), Gaps = 40/381 (10%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   + R   P N +T+N+LI G+C  G + +A  + ++M      P + T ++L+ GL 
Sbjct: 240 FDEMLDRRVAP-NRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLC 298

Query: 71  RTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
           R   M    ++ +EM V G       + P+ F Y +L DG  K   VD +  L  E   K
Sbjct: 299 RAQMMEEAQRVLEEMEVYG-------FVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRK 351

Query: 130 GINA--------NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           G+             LCK+  + +A  +L+  ++ GL PV   +  ++NGYC VG +N A
Sbjct: 352 GVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKA 411

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNG 227
               + M   G  P+  +Y+ L+  +C+  N+EEA    ++M+              ++G
Sbjct: 412 YTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDG 471

Query: 228 FKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           + +         I  EM+   + P   +    I+ LCK+ ++LE   +   +        
Sbjct: 472 YGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPN 531

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
            +I+N LI G C  G  + A   F+++  + +V  +V YNILI+ L K+G++ +   L  
Sbjct: 532 AQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLAS 591

Query: 339 SMEENGCALDVDTFNTLMISF 359
            +   G + DV T+N+L+  +
Sbjct: 592 EITRKGLSFDVITYNSLISGY 612



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 170/400 (42%), Gaps = 75/400 (18%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N VT+NSL+K FC   N+ +A + +KKM   G  PNV T +TLI G  R+   +   
Sbjct: 424 RP-NHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCF 482

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-- 137
           ++ +EM     +  G+ KPNV  YG LI+ LCKD  + + + +  +M  +G+  N  +  
Sbjct: 483 QILEEM-----EKKGL-KPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYN 536

Query: 138 ------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 C   KL +A R  + M+ R + P + TY  L+NG C  GKV  A  L   + RK
Sbjct: 537 MLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRK 596

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---------------------- 229
           G   DV +Y+ LI+GY    NV++A+ +   M  +G K                      
Sbjct: 597 GLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVLVE 656

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS---------NCELF-- 278
           KI+ EM   N+VP+    N  I    ++G V +   L   +E           NC +   
Sbjct: 657 KIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGH 716

Query: 279 ------------------------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
                                    E ++ LI G CK   F+ A   + ++        V
Sbjct: 717 FKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSV 776

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENG---CALDVDT 351
              + LI  L +EG+    + +   M   G   C  D D 
Sbjct: 777 SICDNLITGLREEGRSHDADVICSEMNMKGKDDCRADEDA 816



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 162/365 (44%), Gaps = 38/365 (10%)

Query: 27  FNSLIKGFCMEGN-IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           F+ ++   C E   + ++++L   M   G  P+V + +  +  L  T     TL+L  E+
Sbjct: 114 FSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEI 173

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           V       G+ +P+ F YG  I    K   + +  +L   MK  G++            L
Sbjct: 174 VES-----GL-RPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGL 227

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ ++ +A +L + M+ R + P   TY  L++GYC VG++  A  + + M  +   P +
Sbjct: 228 CKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTI 287

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF-------KKIFNEMKLCNVVPET------ 244
            +++ L+NG C+   +EEA  V  EM + GF         +F+    C  V  +      
Sbjct: 288 ITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEE 347

Query: 245 ----------FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                     +TC+I ++ LCK G++ +  E+      +        FN+++ G C+ G 
Sbjct: 348 AVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGD 407

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A     K+    L  + V YN L+    +   +++    +  M E G   +V+T+NT
Sbjct: 408 INKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNT 467

Query: 355 LMISF 359
           L+  +
Sbjct: 468 LIDGY 472



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 127/303 (41%), Gaps = 56/303 (18%)

Query: 103 YGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
           +  ++  +C + ++V ++ +L+M MK  G+  +          L    +  +  +L   +
Sbjct: 114 FSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEI 173

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           ++ GL P  F Y   +     +G +  AI L   M R G  P VF Y+V+I G CK   +
Sbjct: 174 VESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRM 233

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           ++A            +K+F+EM    V P   T N  IDG CK G + E   +   +++ 
Sbjct: 234 KDA------------EKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVE 281

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY---------------- 317
           N E  +  FNSL+ G C+  + E A  +  ++     V D   Y                
Sbjct: 282 NVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDAS 341

Query: 318 -------------------NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
                              +IL++AL KEG ++K   +L    ENG A     FNT++  
Sbjct: 342 ITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNG 401

Query: 359 FLQ 361
           + Q
Sbjct: 402 YCQ 404


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 196/462 (42%), Gaps = 108/462 (23%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  AL  FG   +    P + VTF +L+ G C+E  + +A     +M    CRPNV T
Sbjct: 128 SKLPFALSTFGKITKLGLHP-DVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVT 186

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGIYK--------- 97
             TL+ GL R G +   + L   M               V+GM   G             
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME 246

Query: 98  ------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------------------- 131
                 PNV  Y ++ID LCKD      ++LF EM++KGI                    
Sbjct: 247 EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRW 306

Query: 132 -NANTLL----------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            +A  LL                       K+ K  EA  L + M+ RG+ P   TY  +
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSM 366

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI---- 224
           ++G+C   +++ A  +F  MA KG  PDVF+++ LI+GYC    +++ M +  EM     
Sbjct: 367 IDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGL 426

Query: 225 -------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                              LN    +  +M    V P+  TCN  +DGLC NG + + +E
Sbjct: 427 VANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 486

Query: 266 LFPTLEISNCEL-----------FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           +F  ++ S  +L            V  +N LI G    G F  A EL+ ++  + +V D 
Sbjct: 487 MFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + Y+ +I  L K+ ++ +   + +SM     + +V TFNTL+
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 588



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 176/380 (46%), Gaps = 48/380 (12%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NS+I GFC  G   DA QL+++M      P+V T + LI    + G      +L+ EM
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEM 351

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL--- 137
           +       GI  PN   Y S+IDG CK   +D  +D+F  M  KG + +     TL+   
Sbjct: 352 LPR-----GII-PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGY 405

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   ++ +   LL  M +RGL     TY  L++G+CLVG +N A+ L   M   G  PD+
Sbjct: 406 CGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDI 465

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM-----------ILNGFK----------------- 229
            + + L++G C N  +++A+ + + M             NG +                 
Sbjct: 466 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEG 525

Query: 230 ------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                 +++ EM    +VP+T T +  IDGLCK   + E  ++F ++   +    V  FN
Sbjct: 526 KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFN 585

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LI G CK G  +   ELF ++  + +VAD + Y  LI+   K G I     +   M  +
Sbjct: 586 TLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISS 645

Query: 344 GCALDVDTFNTLMISFLQKE 363
           G   D  T   ++  F  KE
Sbjct: 646 GVYPDTITIRNMLTGFWSKE 665



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 136/265 (51%), Gaps = 27/265 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI GFC+ G++  A  L ++M + G  P++ TC+TL+ GL   G +   L++ 
Sbjct: 429 NTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 488

Query: 83  QEMVNGMGD------FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           + M     D      F G+ +P+V  Y  LI GL  +    + ++L+ EM  +GI  +T+
Sbjct: 489 KAMQKSKMDLDASHPFNGV-EPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LCK+++L EA ++   M  +  +P + T+  L+NGYC  G+V+  + LF  M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM 607

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            R+G + D   Y  LI G+ K  N+  A+++ +EMI +G            V P+T T  
Sbjct: 608 GRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG------------VYPDTITIR 655

Query: 249 IFIDGLCKNGHVLEVMELFPTLEIS 273
             + G      +   + +   L++S
Sbjct: 656 NMLTGFWSKEELERAVAMLEDLQMS 680



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 153/344 (44%), Gaps = 29/344 (8%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           L  GF     + DA  L   M      P+V     L+  + R    +L + L+Q+M    
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKT 141
                  + +++ +  LI   C    +      F ++   G++ + +        LC + 
Sbjct: 110 ------IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVED 163

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           ++ EA      M +    P + T+T L+NG C  G++  A+AL D M   G  P   +Y 
Sbjct: 164 RVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            +++G CK  +   A+N+ R+M            ++ +++P     +  ID LCK+G   
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKM-----------EEVSHIIPNVVIYSAIIDSLCKDGRHS 272

Query: 262 EVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +   LF   E+    +F ++F  NS+I G C  G +  A +L  ++  + +  DVV YN 
Sbjct: 273 DAQNLFT--EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNA 330

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           LI+A  KEG+  +   L   M   G   +  T+N+++  F +++
Sbjct: 331 LINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 374


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 177/351 (50%), Gaps = 30/351 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VTFN LI G C +G++   ++LV  M   GC PN  T +T+I GL   G ++  + L 
Sbjct: 257 SSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLL 316

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL----- 136
             MV           PN   YG+LI+GL K  R VD    L   ++++G +AN       
Sbjct: 317 DRMV------ASKCVPNDVTYGTLINGLVKQGRSVDGVH-LLSSLEERGHHANEYAYSTL 369

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L K+ K  EA  L + M+++G  P I  Y+ L++G C  GK++ A  +   M  KG 
Sbjct: 370 ISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGC 429

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+ F+YS LI G+ K  N ++A+ V +EM  N            N VP     ++ I G
Sbjct: 430 TPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKN------------NCVPNEICYSVLIHG 477

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK--NLV 311
           LC++G + E M ++  +        V  ++S+I G C  G  E+  +LFN++ C+  +  
Sbjct: 478 LCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQ 537

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            DVV YNIL+ AL K+  I     LL SM + GC  D+ T N  + +  +K
Sbjct: 538 PDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREK 588



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 157/341 (46%), Gaps = 28/341 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ +L+ G C E  I +A  L+ +M   GC P+  T + LI GL + G+M    KL    
Sbjct: 225 TYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKL---- 280

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           V+ M   G +  PN   Y ++I+GLC    +D+   L   M       N +        L
Sbjct: 281 VDNMFLKGCV--PNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGL 338

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K+ + V+   LL  + +RG +   + Y+ L++G     K   A+ L+  M  KG  P++
Sbjct: 339 VKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNI 398

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             YS LI+G C+   ++EA  +  EM+  G              P  FT +  I G  K 
Sbjct: 399 VVYSALIDGLCREGKLDEAKEILCEMVNKG------------CTPNAFTYSSLIKGFFKT 446

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G+  + + ++  +  +NC      ++ LI G C+ G    A  ++  +  + L  DVVAY
Sbjct: 447 GNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAY 506

Query: 318 NILIHALGKEGQIKKENYLLLSM--EENGCALDVDTFNTLM 356
           + +IH L   G ++    L   M  +E+    DV T+N L+
Sbjct: 507 SSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILL 547



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 164/342 (47%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N ++FN +IK  C  G +  A ++ ++MA   C P+V T  TL+ GL +   ++  + L 
Sbjct: 187 NVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLL 246

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL- 136
            EM        G + P+   +  LI+GLCK   + +   L   M  KG     +  NT+ 
Sbjct: 247 DEM-----QIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTII 300

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC K KL +A  LL+ M+     P   TY  L+NG    G+    + L  S+  +G  
Sbjct: 301 NGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHH 360

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            + ++YS LI+G  K    EEAM + ++M+  G +            P     +  IDGL
Sbjct: 361 ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQ------------PNIVVYSALIDGL 408

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + E  E+   +    C      ++SLI+G  K G  + A  ++ +++  N V + 
Sbjct: 409 CREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNE 468

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + Y++LIH L ++G++++   +   M   G   DV  +++++
Sbjct: 469 ICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMI 510



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 147/317 (46%), Gaps = 24/317 (7%)

Query: 53  FGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK 112
           F CR  V + ++++  + + G  +  L+ ++  V G  +      PNV  +  +I  +CK
Sbjct: 145 FQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNIS----PNVLSFNLVIKAMCK 200

Query: 113 DRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFT 164
             LVD+  ++F EM  +    +          LCK+ ++ EA  LL+ M   G  P   T
Sbjct: 201 LGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVT 260

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           +  L+NG C  G +     L D+M  KG +P+  +Y+ +ING C    +++A++      
Sbjct: 261 FNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVS------ 314

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                 + + M     VP   T    I+GL K G  ++ + L  +LE          +++
Sbjct: 315 ------LLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYST 368

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI G  K    E A  L+ K+  K    ++V Y+ LI  L +EG++ +   +L  M   G
Sbjct: 369 LISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 428

Query: 345 CALDVDTFNTLMISFLQ 361
           C  +  T+++L+  F +
Sbjct: 429 CTPNAFTYSSLIKGFFK 445



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 129/270 (47%), Gaps = 37/270 (13%)

Query: 112 KDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL------------- 158
           K  L ++  +LF  M D+        C++T +   N +L +++Q GL             
Sbjct: 127 KAHLPEKAIELFGRMVDE------FQCRRT-VRSFNSVLNVIIQEGLFHRALEFYECGVG 179

Query: 159 -----NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
                +P + ++  ++   C +G V+ AI +F  MA +   PDVF+Y  L++G CK   +
Sbjct: 180 GKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRI 239

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           +EA+             + +EM++    P + T N+ I+GLCK G ++ V +L   + + 
Sbjct: 240 DEAV------------LLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLK 287

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            C      +N++I G C  G  + A  L +++     V + V Y  LI+ L K+G+    
Sbjct: 288 GCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDG 347

Query: 334 NYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +LL S+EE G   +   ++TL+    ++E
Sbjct: 348 VHLLSSLEERGHHANEYAYSTLISGLFKEE 377



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 114/262 (43%), Gaps = 25/262 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +++LI G C EG + +A +++ +M   GC PN  T  +LI G  +TGN    +++ 
Sbjct: 397 NIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVW 456

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM            PN  CY  LI GLC+D  + +   ++  M  +G+  + +      
Sbjct: 457 KEMAKNN------CVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMI 510

Query: 137 --LCKKTKLVEANRLLELMM--QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             LC    +    +L   M+  +    P + TY  LL   C    ++ AI L +SM  +G
Sbjct: 511 HGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRG 570

Query: 193 FMPDVFSYSVLINGYCKNFNVEE---------AMNVSREMILNGFKKIFNEMKLCNVVPE 243
             PD+ + ++ +N   +  N  +          + + +   + G  KI   M    + P 
Sbjct: 571 CNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPN 630

Query: 244 TFTCNIFIDGLCKNGHVLEVME 265
             T    I  LCK   V  +++
Sbjct: 631 ASTWERIIPELCKPKKVQAIID 652


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/425 (28%), Positives = 201/425 (47%), Gaps = 70/425 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   + +  +P N  T+N LI G+   G  ++  +L+++M+T    P+      L+
Sbjct: 358 AKAVFQQMLDKGVKPSNG-TYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLL 416

Query: 67  TGLRRTGNMNLTLKLHQEMV------NGMGD-----FGGIYK----PNVFCYGSLIDGLC 111
             L + G       +   ++      + M D     F  + +    PNV  YG+LID LC
Sbjct: 417 DYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALC 476

Query: 112 KDRLVD-----------------------QTKDLFMEMKDKGINA-----NTL---LCKK 140
           K   VD                       + ++L  EM D+GI       NTL   LC++
Sbjct: 477 KLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCRE 536

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            +++EA RL+ELM++ G+ P + +Y  L++G+CL G+ + A  L D M   G  P+ F+Y
Sbjct: 537 GRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTY 596

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKKIFNEMKL 237
           + L++GYCK   +++A ++ REM++NG                        K+++  M  
Sbjct: 597 NTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMIN 656

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
                + +T NI ++GLCKN  V E  ++F +L     +L +  FN +I    K G  E 
Sbjct: 657 SRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKED 716

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A +LF  +S   LV DV  Y ++   L KEG +++   L  +MEENG A +    N L+ 
Sbjct: 717 AMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVR 776

Query: 358 SFLQK 362
            FL +
Sbjct: 777 RFLHR 781



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 176/364 (48%), Gaps = 34/364 (9%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITGL 69
           FG  ++  +R +N + FN L+KG C    + +A+  L+ +M  FGC PNV + +TL+ G 
Sbjct: 218 FGLILKTGWR-VNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGF 276

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
                    L+L   M +   D G    P+V  Y ++I+G  ++  VD+  +LF++M D+
Sbjct: 277 CNENRAEEALELLHVMAD---DQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDR 333

Query: 130 GINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           GI  + +        LCK   +  A  + + M+ +G+ P   TY  L++GY   GK    
Sbjct: 334 GIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEV 393

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------IF 232
           + L + M+     PD F Y++L++  CKN    EA N+   +I  G K          IF
Sbjct: 394 VRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIF 453

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           ++M+   + P        ID LCK G V + +  F        ++  E++     G C  
Sbjct: 454 DKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKF-------NQMINEVY-----GLCTV 501

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             +E A EL  ++  + +  DVV +N L+  L +EG++ +   L+  M   G   DV ++
Sbjct: 502 EKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISY 561

Query: 353 NTLM 356
           NTL+
Sbjct: 562 NTLV 565



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 37/231 (16%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVG------KVNVAIALFDSMARK---GFMP 195
           +A +L +L++       +  +  LL             +  + I+LFD M R+      P
Sbjct: 134 DALKLFDLLLPHARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVRECSDKVAP 193

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEMKLCNVVPETFTCNIFID 252
           D  +YS+LI  +C+   +E    V   ++  G++    +FN++               + 
Sbjct: 194 DRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQL---------------LK 238

Query: 253 GLCKNGHVLEVME-LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN------KL 305
           GLC    + E    L   +    C   V  +N+L++G C     E A EL +       L
Sbjct: 239 GLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGL 298

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           SC     DVV+YN +I+   +EGQ+ K   L L M + G   DV T+NT++
Sbjct: 299 SCP---PDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVI 346



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 14/201 (6%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           TY+ L+  +C +G++    A+F  + + G+  +   ++ L+ G C    ++EA N+    
Sbjct: 197 TYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNI---- 252

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS---NCELFVE 280
                  +   M      P   + N  + G C      E +EL   +      +C   V 
Sbjct: 253 -------LLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVV 305

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            +N++I G  + G  + A  LF ++  + +  DVV YN +I  L K   + +   +   M
Sbjct: 306 SYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQM 365

Query: 341 EENGCALDVDTFNTLMISFLQ 361
            + G      T+N L+  +L 
Sbjct: 366 LDKGVKPSNGTYNCLIHGYLS 386


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/354 (33%), Positives = 182/354 (51%), Gaps = 29/354 (8%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R+   P + V++N+LI G C    +++A  L+ +M   GC PN  TC TL+ GL + G M
Sbjct: 172 RKSVSP-DIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRM 230

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           +  +    E++  M   G  +  +V  YG+LI G C +  +D+ K+LF EM  KGI+AN 
Sbjct: 231 DEAM----ELLEAMKKKG--FDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANV 284

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +        LC+  +  EAN +L  M + G++P + TYT L++G C  G+   A+ L + 
Sbjct: 285 VTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNL 344

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  KG  P   +Y+VL++G CK   V +A  + R MI  G K             +  T 
Sbjct: 345 MVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKK------------ADVVTY 392

Query: 248 NIFIDGLCKNGHVLEVMELFPTL-EISNC-ELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           N  + GLC  G V E ++LF ++ +  NC E  V  FN LI G CK G    A ++  K+
Sbjct: 393 NTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKM 452

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             K    ++V YN+L+    K G+IK+   L   + + G   +  T++ L+  F
Sbjct: 453 VKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGF 506



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 178/400 (44%), Gaps = 74/400 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V + +LI GFC  GN+    +L  +M   G   NV T   L+ GL R G      K    
Sbjct: 250 VLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQW----KEANT 305

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
           ++N M + G    P+V  Y  LIDGLCKD       DL   M +KG     +  N LL  
Sbjct: 306 VLNAMAEHG--IHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSG 363

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM--ARKGFM 194
            CK+  +++A ++L +M+++G    + TY  L+ G C  GKV+ A+ LF+SM        
Sbjct: 364 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLE 423

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------FKKIFNEMKL 237
           P+VF++++LI G CK   + +A+ + R+M+  G                   KI   M+L
Sbjct: 424 PNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 483

Query: 238 CN------VVPETFTCNIFIDG-----------------------------------LCK 256
                    VP +FT +I IDG                                   LCK
Sbjct: 484 WKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCK 543

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + +   LF  +  +NCE  +  FN++I G  K G F+   EL  K+    L  D + 
Sbjct: 544 EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALT 603

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++ LI+ L K G++ +    L  M  +G   D   +++L+
Sbjct: 604 FSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLL 643



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 149/330 (45%), Gaps = 51/330 (15%)

Query: 31  IKGFCMEGNIR--DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM--V 86
           ++  C + N +  +A  L      F   P+  TC+ L+  L R+ N  L   +++ M  V
Sbjct: 44  LRSLCQKPNSQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHV 103

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
           + +  FG +    + C+                                   +K +L   
Sbjct: 104 DVLPSFGSL-SALIECFAD--------------------------------AQKPQL--G 128

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             ++ L+++RG    +F    +L G C  G V  A+ L   M RK   PD+ SY+ LING
Sbjct: 129 FGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLING 188

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            CK   ++EA+             +  EM+     P + TC   +DGLCK+G + E MEL
Sbjct: 189 LCKAKKLKEAVG------------LLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMEL 236

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              ++    +  V ++ +LI G C  G  +   ELF+++  K + A+VV Y+ L+H L +
Sbjct: 237 LEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCR 296

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            GQ K+ N +L +M E+G   DV T+  L+
Sbjct: 297 LGQWKEANTVLNAMAEHGIHPDVVTYTGLI 326



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 143/335 (42%), Gaps = 72/335 (21%)

Query: 3   KVLGALMAFGSFI--RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           KV  AL  F S      C  P N  TFN LI G C EG +  A ++ +KM   G   N+ 
Sbjct: 404 KVDEALKLFNSMFDNENCLEP-NVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLV 462

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T + L+ G  + G +   ++L ++++    D G  + PN F Y  LIDG CK R+++  K
Sbjct: 463 TYNMLLGGCLKAGKIKEAMELWKQVL----DLG--FVPNSFTYSILIDGFCKMRMLNIAK 516

Query: 121 DLFMEMKDKGINA-----NTL---LCKKTKLVEANRLLE--------------------- 151
            LF EM+  G+N      NTL   LCK+  L +A  L +                     
Sbjct: 517 GLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGT 576

Query: 152 --------------LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
                          M++ GL P   T++ L+N    +G+++ A +  + M   GF PD 
Sbjct: 577 LKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDA 636

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             Y  L+ G     +  E +N+  +M   G   + +      +V    TC      LC +
Sbjct: 637 LVYDSLLKGLSSKGDTTEIINLLHQMAAKG--TVLDR----KIVSTILTC------LCHS 684

Query: 258 GHVLEVMELFPTL--------EISNCELFVEIFNS 284
              ++VMEL PT          IS  EL +++  S
Sbjct: 685 IQEVDVMELLPTFFQGTSEGASISCNELLMQLHQS 719


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 177/351 (50%), Gaps = 30/351 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VTFN LI G C +G++   ++LV  M   GC PN  T +T+I GL   G ++  + L 
Sbjct: 241 SSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLL 300

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL----- 136
             MV           PN   YG+LI+GL K  R VD    L   ++++G +AN       
Sbjct: 301 DRMV------ASKCVPNDVTYGTLINGLVKQGRSVDGVH-LLSSLEERGHHANEYAYSTL 353

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L K+ K  EA  L + M+++G  P I  Y+ L++G C  GK++ A  +   M  KG 
Sbjct: 354 ISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGC 413

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+ F+YS LI G+ K  N ++A+ V +EM  N            N VP     ++ I G
Sbjct: 414 TPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKN------------NCVPNEICYSVLIHG 461

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK--NLV 311
           LC++G + E M ++  +        V  ++S+I G C  G  E+  +LFN++ C+  +  
Sbjct: 462 LCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQ 521

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            DVV YNIL+ AL K+  I     LL SM + GC  D+ T N  + +  +K
Sbjct: 522 PDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREK 572



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 157/341 (46%), Gaps = 28/341 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ +L+ G C E  I +A  L+ +M   GC P+  T + LI GL + G+M    KL    
Sbjct: 209 TYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKL---- 264

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           V+ M   G +  PN   Y ++I+GLC    +D+   L   M       N +        L
Sbjct: 265 VDNMFLKGCV--PNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGL 322

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K+ + V+   LL  + +RG +   + Y+ L++G     K   A+ L+  M  KG  P++
Sbjct: 323 VKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNI 382

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             YS LI+G C+   ++EA  +  EM+  G              P  FT +  I G  K 
Sbjct: 383 VVYSALIDGLCREGKLDEAKEILCEMVNKG------------CTPNAFTYSSLIKGFFKT 430

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G+  + + ++  +  +NC      ++ LI G C+ G    A  ++  +  + L  DVVAY
Sbjct: 431 GNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAY 490

Query: 318 NILIHALGKEGQIKKENYLLLSM--EENGCALDVDTFNTLM 356
           + +IH L   G ++    L   M  +E+    DV T+N L+
Sbjct: 491 SSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILL 531



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 164/342 (47%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N ++FN +IK  C  G +  A ++ ++MA   C P+V T  TL+ GL +   ++  + L 
Sbjct: 171 NVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLL 230

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL- 136
            EM        G + P+   +  LI+GLCK   + +   L   M  KG     +  NT+ 
Sbjct: 231 DEM-----QIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTII 284

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC K KL +A  LL+ M+     P   TY  L+NG    G+    + L  S+  +G  
Sbjct: 285 NGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHH 344

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            + ++YS LI+G  K    EEAM + ++M+  G +            P     +  IDGL
Sbjct: 345 ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQ------------PNIVVYSALIDGL 392

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + E  E+   +    C      ++SLI+G  K G  + A  ++ +++  N V + 
Sbjct: 393 CREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNE 452

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + Y++LIH L ++G++++   +   M   G   DV  +++++
Sbjct: 453 ICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMI 494



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 148/317 (46%), Gaps = 24/317 (7%)

Query: 53  FGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK 112
           F CR  V + ++++  + + G  +  L+ ++  V G  +      PNV  +  +I  +CK
Sbjct: 129 FQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNIS----PNVLSFNLVIKAMCK 184

Query: 113 DRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFT 164
             LVD+  ++F EM  +    +          LCK+ ++ EA  LL+ M   G  P   T
Sbjct: 185 LGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVT 244

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           +  L+NG C  G +     L D+M  KG +P+  +Y+ +ING C    +++A+++   M+
Sbjct: 245 FNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMV 304

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
            +              VP   T    I+GL K G  ++ + L  +LE          +++
Sbjct: 305 AS------------KCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYST 352

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI G  K    E A  L+ K+  K    ++V Y+ LI  L +EG++ +   +L  M   G
Sbjct: 353 LISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 412

Query: 345 CALDVDTFNTLMISFLQ 361
           C  +  T+++L+  F +
Sbjct: 413 CTPNAFTYSSLIKGFFK 429



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 129/270 (47%), Gaps = 37/270 (13%)

Query: 112 KDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL------------- 158
           K  L ++  +LF  M D+        C++T +   N +L +++Q GL             
Sbjct: 111 KAHLPEKAIELFGRMVDE------FQCRRT-VRSFNSVLNVIIQEGLFHRALEFYECGVG 163

Query: 159 -----NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
                +P + ++  ++   C +G V+ AI +F  MA +   PDVF+Y  L++G CK   +
Sbjct: 164 GKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRI 223

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           +EA+             + +EM++    P + T N+ I+GLCK G ++ V +L   + + 
Sbjct: 224 DEAV------------LLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLK 271

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            C      +N++I G C  G  + A  L +++     V + V Y  LI+ L K+G+    
Sbjct: 272 GCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDG 331

Query: 334 NYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +LL S+EE G   +   ++TL+    ++E
Sbjct: 332 VHLLSSLEERGHHANEYAYSTLISGLFKEE 361



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 114/262 (43%), Gaps = 25/262 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +++LI G C EG + +A +++ +M   GC PN  T  +LI G  +TGN    +++ 
Sbjct: 381 NIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVW 440

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM            PN  CY  LI GLC+D  + +   ++  M  +G+  + +      
Sbjct: 441 KEMAKNN------CVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMI 494

Query: 137 --LCKKTKLVEANRLLELMM--QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             LC    +    +L   M+  +    P + TY  LL   C    ++ AI L +SM  +G
Sbjct: 495 HGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRG 554

Query: 193 FMPDVFSYSVLINGYCKNFNV---------EEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
             PD+ + ++ +N   +  N          E  + + +   + G  KI   M    + P 
Sbjct: 555 CNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPN 614

Query: 244 TFTCNIFIDGLCKNGHVLEVME 265
             T    I  LCK   V  +++
Sbjct: 615 ASTWERIIPELCKPKKVQAIID 636


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 185/379 (48%), Gaps = 38/379 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R    P N   F+ L+  +  +  + +A  +  KM   G  PN  T   +I  L ++G 
Sbjct: 255 VRNGIHP-NHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 313

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           +   +   ++M+    D G    P    Y SLI GLC     ++ ++L +EM D+GI  N
Sbjct: 314 VEDAMLYFEQMI----DEG--LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 367

Query: 135 TLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           T+         CK+ +++E+ +L +LM++ G+ P I TY+ L++GYCL GK++ A  L  
Sbjct: 368 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLA 427

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---- 228
           SM   G  PD  +YS LINGYCK   +++A+ + REM              IL G     
Sbjct: 428 SMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTR 487

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                K+++  +       E  T NI + GLCKN    + + +F  L + + +L    FN
Sbjct: 488 RTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFN 547

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            +I    K G  + A +LF   S   LV +   Y ++   +  +G +++ + L LSME+N
Sbjct: 548 IMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN 607

Query: 344 GCALDVDTFNTLMISFLQK 362
           GC +D    N ++   LQ+
Sbjct: 608 GCTVDSGMLNFIVRELLQR 626



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 172/399 (43%), Gaps = 67/399 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCD 63
           A   F   +RR    + DV ++N L+ G C E   ++A +L+  MA  G  C P+V +  
Sbjct: 36  ARHVFDELLRR---GIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           T+I G  + G+++ T   + EM++          PNV  Y S+I  LCK + VD+  ++ 
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQR------ISPNVVTYNSIIAALCKAQTVDKAMEVL 146

Query: 124 MEMKDKGINANTL-------------------------------------------LCKK 140
             M   G+  + +                                           LCK 
Sbjct: 147 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 206

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            +  EA ++ + M +RGL P I TY  LL GY   G +     L D M R G  P+ + +
Sbjct: 207 GRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 266

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           S+L+  Y K   VEEAM V            F++M+   + P   T    I  LCK+G V
Sbjct: 267 SILVCAYAKQEKVEEAMLV------------FSKMRQQGLNPNAVTYGAVIGILCKSGRV 314

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            + M  F  +          ++NSLI G C    +E A EL  ++  + +  + + +N +
Sbjct: 315 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 374

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           I +  KEG++ +   L   M   G   D+ T++TL+  +
Sbjct: 375 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 413



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 15/220 (6%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF--MPDVFSYSV 202
           +A  + + +++RG+ P +F+Y  LLNG C   +   A+ L   MA  G    PDV SYS 
Sbjct: 35  DARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYST 93

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           +ING+ K  ++++  +             +NEM    + P   T N  I  LCK   V +
Sbjct: 94  VINGFFKEGDLDKTYST------------YNEMLDQRISPNVVTYNSIIAALCKAQTVDK 141

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            ME+  T+  S        +NS++ G C  G  + A     K+    +  DVV YN L+ 
Sbjct: 142 AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD 201

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            L K G+  +   +  SM + G   ++ T+ TL+  +  K
Sbjct: 202 YLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATK 241



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 120/256 (46%), Gaps = 21/256 (8%)

Query: 117 DQTKDLFMEMKDKGI----NANTLL---CKKTKLVEANRLLELMMQRGLN--PVIFTYTP 167
           +  + +F E+  +GI    + N LL   C + +  EA  LL +M   G +  P + +Y+ 
Sbjct: 34  EDARHVFDELLRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYST 93

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           ++NG+   G ++   + ++ M  +   P+V +Y+ +I   CK   V++AM V   M+ +G
Sbjct: 94  VINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSG 153

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                       V+P+  T N  + G C +G   E +     +     E  V  +NSL+ 
Sbjct: 154 ------------VMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD 201

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
             CK G    A ++F+ ++ + L  ++  Y  L+     +G + + + LL  M  NG   
Sbjct: 202 YLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 261

Query: 348 DVDTFNTLMISFLQKE 363
           +   F+ L+ ++ ++E
Sbjct: 262 NHYVFSILVCAYAKQE 277


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 183/362 (50%), Gaps = 34/362 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   ++R + P + VT+N+LI GFC    + +A +++++M +    P+V T ++L+
Sbjct: 64  ALKIFDGAVKRGFVP-DVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLV 122

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFME 125
            GL + G ++    L       + D G  + PNV  Y +LI GLC++ R V +   LF  
Sbjct: 123 NGLCKNGRVDEARML-------IVDKG--FSPNVITYSTLISGLCRELRGVSEALKLFGS 173

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           +  +G              L K+ ++ EA  L   +++ GL P   TYT  ++G C  G+
Sbjct: 174 VLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGR 233

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           V  A+ +   M  KG +PDV S++ +ING CK   V+EA     E++L+G      E K 
Sbjct: 234 VEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEA-----EVLLSGM-----EAKG 283

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF---GI 294
           C+  P   + N  I G C+ G   + M  F  +     +  V  +N L+ G CK    G 
Sbjct: 284 CS--PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGR 341

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A  LF+ +  K  V DVV Y+ LI  LGK G++     LL +ME  GC  +V T+N+
Sbjct: 342 IKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNS 401

Query: 355 LM 356
           L+
Sbjct: 402 LI 403



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 182/362 (50%), Gaps = 34/362 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   +   I+  Y P + VT+N+L+ GFC  G + +A ++       G  P+V T + LI
Sbjct: 29  AQALYERMIKAGYSP-DVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALI 87

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  +   ++   ++ Q MV+          P+V  Y SL++GLCK+  VD+ + L +  
Sbjct: 88  NGFCKADKLDEAQRILQRMVSEN------LVPDVVTYNSLVNGLCKNGRVDEARMLIV-- 139

Query: 127 KDKGINANTL--------LCKKTKLV-EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
            DKG + N +        LC++ + V EA +L   ++++G  P + TY  L++G     +
Sbjct: 140 -DKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDR 198

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           VN A  LF  + + G  PD  +Y+V I+G CK   VE+A+ + ++M          + K 
Sbjct: 199 VNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM----------DEKG 248

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
           C  VP+  + N  I+GLCK   V E   L   +E   C      FN+LI G C+ G ++ 
Sbjct: 249 C--VPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKK 306

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGK---EGQIKKENYLLLSMEENGCALDVDTFNT 354
           A   F ++  + +   VV YNIL+  L K   EG+IK+   L  +M E G   DV T++ 
Sbjct: 307 AMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSA 366

Query: 355 LM 356
           L+
Sbjct: 367 LI 368



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 158/335 (47%), Gaps = 49/335 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+N+L+ G C  G + DA  L ++M   G  P+V T +TL+ G  + G ++  LK+ 
Sbjct: 9   NRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIF 68

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
              V         + P+V  Y +LI+G CK                             K
Sbjct: 69  DGAVKRG------FVPDVVTYNALINGFCK---------------------------ADK 95

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L EA R+L+ M+   L P + TY  L+NG C  G+V+ A  L   +  KGF P+V +YS 
Sbjct: 96  LDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYST 152

Query: 203 LINGYCKNFN-VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           LI+G C+    V EA+ +   ++  G++            PE  T NI IDGL K   V 
Sbjct: 153 LISGLCRELRGVSEALKLFGSVLKQGYE------------PEVPTYNILIDGLLKEDRVN 200

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           E  ELF  L     E     +   I G CK G  E A  +   +  K  V DVV++N +I
Sbjct: 201 EAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVI 260

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + L KE ++ +   LL  ME  GC+ +  +FNTL+
Sbjct: 261 NGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 295



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 17/193 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+ N++I G C E  + +A  L+  M   GC PN  + +TLI G  R G     +   +E
Sbjct: 254 VSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKE 313

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD---LFMEMKDKGINANTL----- 136
           M+       G+ KP V  Y  L+DGLCK R   + K+   LF  M +KG   + +     
Sbjct: 314 MLKR-----GV-KPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSAL 367

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L K  KL +A RLL  M  +G  P ++TY  L++G C + KV+ A+ LF +M  KG 
Sbjct: 368 IDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGC 427

Query: 194 MPDVFSYSVLING 206
           +PD  +Y  +I+ 
Sbjct: 428 VPDTITYGTIISA 440



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 130/291 (44%), Gaps = 65/291 (22%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  FGS +++ Y P    T+N LI G   E  + +A +L   +   G  P+  T    I
Sbjct: 167 ALKLFGSVLKQGYEP-EVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 225

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G +   L + ++M     D  G   P+V  + ++I+GLCK++ VD+ + L   M
Sbjct: 226 DGLCKAGRVEDALLMLKDM-----DEKGCV-PDVVSHNAVINGLCKEKRVDEAEVLLSGM 279

Query: 127 KDKG-----INANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV--- 175
           + KG     I+ NTL+C   +  K  +A    + M++RG+ P + TY  L++G C     
Sbjct: 280 EAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQE 339

Query: 176 GKVNVAIALFDSMARKGFMPD-----------------------------------VFSY 200
           G++  AI LFD+M  KG +PD                                   V++Y
Sbjct: 340 GRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTY 399

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           + LI+G C    V+EA+ +   M+  G             VP+T T    I
Sbjct: 400 NSLISGLCGLEKVDEALELFVAMVEKG------------CVPDTITYGTII 438



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 39/82 (47%)

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N+L+ G C  G    A  L+ ++       DVV YN L+H   K G++ +   +     
Sbjct: 13  YNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAV 72

Query: 342 ENGCALDVDTFNTLMISFLQKE 363
           + G   DV T+N L+  F + +
Sbjct: 73  KRGFVPDVVTYNALINGFCKAD 94


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 176/364 (48%), Gaps = 40/364 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N LI  FC EG+IRDA  +  ++   G RP   + +TLI GL ++ N++   +L + M 
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTM- 284

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------C 138
               +   IY P+VF Y  LI GLCK+  +D  + LF EM+ +G+  N +         C
Sbjct: 285 ----EENRIY-PDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQC 339

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +  ++  A      M+  G+ P +  Y  LLNG C VG VN A  L D M   G  PD  
Sbjct: 340 RSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKI 399

Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEM 235
           +Y+ LI+GYCK  ++E AM + + M              +++GF         ++   EM
Sbjct: 400 TYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREM 459

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               + P+  T  + IDG CK G+V    +L   ++I+  +  V  +N L+ G CK G  
Sbjct: 460 VEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQM 519

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + A+ L   +    +  D + YNIL+    K G  K E+ L L   E G  +D   + +L
Sbjct: 520 KNANMLLEAMLNLGVTPDDITYNILLEGHCKNG--KAEDLLKLR-NEKGLIVDYAYYTSL 576

Query: 356 MISF 359
           +  +
Sbjct: 577 VSEY 580



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 165/361 (45%), Gaps = 37/361 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F++L+  +   G + DA Q  + +     +     C  L+  +  + +       + E++
Sbjct: 156 FDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEIL 215

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
               ++G  + P V  Y  LI+  CK+  +   K +F E++ +G+   T+        LC
Sbjct: 216 ----EYG--FPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L E  RL + M +  + P +FTY+ L++G C  G+++VA  LFD M ++G  P+  
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEM 235
           +++ LI+G C++  ++ AMN   +M              +LNG          +K+ +EM
Sbjct: 330 TFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           ++  + P+  T    IDG CK G +   ME+   +      L    F +LI G C+ G  
Sbjct: 390 RMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRV 449

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
             A     ++    +  D   Y ++I    K+G +K    LL  M+ NG    V T+N L
Sbjct: 450 RDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVL 509

Query: 356 M 356
           M
Sbjct: 510 M 510



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 133/265 (50%), Gaps = 29/265 (10%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F    +R  RP N +TF +LI G C    I  A     +M T G +P++   +TL+ GL 
Sbjct: 316 FDEMQQRGLRP-NGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLC 374

Query: 71  RTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
           + G++N   KL  EM + GM       KP+   Y +LIDG CK+  ++   ++   M ++
Sbjct: 375 KVGDVNKARKLVDEMRMVGM-------KPDKITYTTLIDGYCKEGDLESAMEIRKGMNEE 427

Query: 130 GINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           G+  + +         C+  ++ +A R L  M++ G+ P   TYT +++GYC  G V + 
Sbjct: 428 GVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMG 487

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             L   M   G  P V +Y+VL+NG CK   ++ A N+  E +LN             V 
Sbjct: 488 FKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNA-NMLLEAMLN-----------LGVT 535

Query: 242 PETFTCNIFIDGLCKNGHVLEVMEL 266
           P+  T NI ++G CKNG   ++++L
Sbjct: 536 PDDITYNILLEGHCKNGKAEDLLKL 560


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 187/404 (46%), Gaps = 72/404 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN+++ G C+EGN+  A + V  +   G   +  TC  +  GL + G+ +  L   ++
Sbjct: 154 VTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKK 213

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     +       +V  Y  ++DGLCKD +V +  +LF +M  KGI  +          
Sbjct: 214 MEEKNCNL------DVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHG 267

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVI---------------------------------- 162
           LC   +  EA  LL  MM++G+ P +                                  
Sbjct: 268 LCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHD 327

Query: 163 -FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
             TYT ++  +C++ ++  A+ +FD M  KG +P++ +Y+ LI+G+C+  N+ +AM    
Sbjct: 328 VVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLG 387

Query: 222 EMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           EM+ NG                        K++F  M     +P   TC I +DGL K  
Sbjct: 388 EMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCN 447

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              E M LF  LE  N +L + I+N ++ G C  G    A ELF+ LS K +  DVV YN
Sbjct: 448 FHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYN 507

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           I+I  L KEG +     LL+ MEENGC  +  T+N  +   L++
Sbjct: 508 IMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQGLLRR 551



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 142/326 (43%), Gaps = 34/326 (10%)

Query: 43  ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK----P 98
           A  L+K M+  G +P V T + +I  L R  +           V G    G ++K    P
Sbjct: 102 AISLIKHMSYIGVKPTVHTLNIVINCLCRLSHA----------VFGFSVLGLMFKIGVEP 151

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLL 150
           ++  + ++++GLC +  V Q       +KD G  +++         LCK      A   L
Sbjct: 152 SIVTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYL 211

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
           + M ++  N  +  Y+ +++G C  G V  A+ LF  M  KG  PD+F+Y+ LI+G C  
Sbjct: 212 KKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNF 271

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
              +EA  +   M+  G            ++P+  T N+      K G +     +F  +
Sbjct: 272 DRWKEAAPLLANMMRKG------------IMPDVQTFNVIAGRFFKTGMISRAKSIFSFM 319

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                E  V  + S+I   C     + A E+F+ +  K  + ++V Y  LIH   +   +
Sbjct: 320 VHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNM 379

Query: 331 KKENYLLLSMEENGCALDVDTFNTLM 356
            K  Y L  M  NG   +V T++TL+
Sbjct: 380 NKAMYFLGEMVNNGLDPNVVTWSTLI 405



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 12/227 (5%)

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           +++ K      A  L++ M   G+ P + T   ++N  C +       ++   M + G  
Sbjct: 91  SIVAKMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVE 150

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P + +++ ++NG C   NV +A+            +  + +K      +++TC    +GL
Sbjct: 151 PSIVTFNTIVNGLCVEGNVAQAI------------RFVDHLKDMGYESDSYTCGAITNGL 198

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK GH    +     +E  NC L V  ++ ++ G CK G+   A  LF++++ K +  D+
Sbjct: 199 CKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDL 258

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             YN LIH L    + K+   LL +M   G   DV TFN +   F +
Sbjct: 259 FTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFFK 305



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 14/215 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ SLI G+C   N+  A   + +M   G  PNV T  TLI G+ + G         
Sbjct: 362 NIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAA---- 417

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +E+   M   G +  PN+     ++DGL K     +   LF E++    + N +      
Sbjct: 418 KELFLVMHKHGQL--PNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIIL 475

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             +C   KL +A  L   +  +G+   + TY  ++ G C  G ++ A  L   M   G  
Sbjct: 476 DGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCP 535

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           P+  +Y+V + G  + + + ++      M   GF+
Sbjct: 536 PNECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQ 570


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 188/417 (45%), Gaps = 61/417 (14%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   ++  Y P   +TFN+LI G C+ G +++A      +   G   +  +  TLI
Sbjct: 113 AFSIFAKILKLGYHP-TTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLI 171

Query: 67  TGLRRTGNMNLTL----KLHQEMVN-----------------GMGDFGGIYK-------- 97
            GL + G     L    K+  ++VN                  + D   +Y         
Sbjct: 172 NGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRIS 231

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+V  + SLI G C    + +   LF EM  K IN +          LCK   +  A  +
Sbjct: 232 PDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNM 291

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L +MM++G+ P + TY+ L++GYCLV +VN A  +F +M+R G  P   SY+++ING  K
Sbjct: 292 LAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGK 351

Query: 210 NFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFT 246
              V+EA+++ +EM   G                         ++ +EM    +  +  T
Sbjct: 352 IKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILT 411

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  ID LCKN H+ + + L   ++    +  +  +N LI G CK G  + A ++F  L 
Sbjct: 412 YNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLL 471

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            K    +   YNI+I+ L KEG   +   LL  ME NG   D  T+ T++ +  +K+
Sbjct: 472 IKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKD 528



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 172/352 (48%), Gaps = 27/352 (7%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V  A   +   I +   P + VTFNSLI GFC+ G +++A  L  +M      P+V T  
Sbjct: 215 VSDAYQLYSEMITKRISP-DVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFS 273

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            L+  L + GN+       + M+  M   G I  P+V  Y SL+DG C    V++ K +F
Sbjct: 274 ILVDALCKDGNITRA----KNMLAVMMKQGVI--PDVVTYSSLMDGYCLVNEVNKAKHVF 327

Query: 124 MEMKDKGI-----NANTLL--CKKTKLV-EANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
             M   G+     + N ++    K K+V EA  L + M  +G+ P   TY  L++G C +
Sbjct: 328 STMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKL 387

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G+++ A  L D M   G   D+ +Y+ LI+  CKN ++++A+ + +++   G +      
Sbjct: 388 GRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQ------ 441

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                 P  +T NI IDGLCK G +    ++F  L I    +    +N +I G CK G+F
Sbjct: 442 ------PSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLF 495

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
             A  L +K+    ++ D V Y  +I AL ++ + +K   LL  M   G  L
Sbjct: 496 NEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGLLL 547



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 30/241 (12%)

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
           T  +  +  LEL   +G+ P I T+  L+N YC +G++  A ++F  + + G+ P   ++
Sbjct: 76  TTAISLSHQLEL---KGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITF 132

Query: 201 SVLINGYCKNFNVEEAMN--------------VSREMILNGFKKIFN-----------EM 235
           + LING C N  ++EA++              VS   ++NG  KI             E 
Sbjct: 133 NTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEG 192

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           KL N   +    NI I+ LCK+  V +  +L+  +        V  FNSLI G C  G  
Sbjct: 193 KLVNT--DVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQL 250

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + A  LF+++  KN+  DV  ++IL+ AL K+G I +   +L  M + G   DV T+++L
Sbjct: 251 KEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSL 310

Query: 356 M 356
           M
Sbjct: 311 M 311


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 173/380 (45%), Gaps = 54/380 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-------- 76
           VT+N  I G C    + DA QL+KKM    C P   T   L+ GL + G ++        
Sbjct: 43  VTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQ 102

Query: 77  -------LTLKLHQEMVNGMGDFGGIY--------------KPNVFCYGSLIDGLCKDRL 115
                   TLK +  +++G+   G +               +P+ F Y +LI GLCK   
Sbjct: 103 MVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGK 162

Query: 116 VDQTKDLFMEMKDKGINANTL------------LCKKTKLVEANRLLE-LMMQRGLNPVI 162
            ++   L+ E   +  +A  +            LCK  +++EA ++ +   ++RG  P  
Sbjct: 163 PEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDA 222

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            TYT +++G C +G+V      F  M  +G+ PD  +Y+ LI+G+ K   + +A  V R+
Sbjct: 223 VTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQ 282

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
           M+ +G             V  T T NI +DGLCK G V E    F  +E   C   V  +
Sbjct: 283 MLQSG------------TVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTY 330

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           ++L+ G C  G    A ELF ++  +    ++V+YNI+I  L + G++ K  +    + +
Sbjct: 331 SALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQ 390

Query: 343 NGCALDVDTFNTLMISFLQK 362
                DV TFN  +    Q+
Sbjct: 391 RRLCPDVYTFNAFLHGLCQR 410



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 161/355 (45%), Gaps = 40/355 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMAT-FGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           VT+ SLI G C  G I +A Q+    A   G  P+  T  ++I GL + G +    +   
Sbjct: 187 VTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFH 246

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           EM N        Y+P+   Y +LIDG  K +++ +   ++ +M   G   +T+       
Sbjct: 247 EMRNRG------YEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILD 300

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LCK  ++ EA      M +RG    + TY+ L++G+C  G V+ A+ LF  M  +G  P
Sbjct: 301 GLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEP 360

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMI----------LNGF--------------KKI 231
           ++ SY+++I G C+   + +A     +++           N F               ++
Sbjct: 361 NLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVEL 420

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F  M      P   + +I +DG+C+ G +   +E+F  +        V +FN+LIR  C 
Sbjct: 421 FESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCI 480

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G  + A E+F +L  +    D  +Y  L+  L +  ++++   L   M+  GCA
Sbjct: 481 AGRVDEALEVFRELE-RRSAPDAWSYWSLLDGLSRCERMEEARLLSFHMKLQGCA 534



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 137/310 (44%), Gaps = 52/310 (16%)

Query: 1   TSKVLGALMAFG-SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV 59
             ++L A   F    + R + P + VT+ S+I G C  G + +  +   +M   G  P+ 
Sbjct: 199 AGRILEARQVFDDEAVERGFIP-DAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDA 257

Query: 60  TTCDTLITGLRRTGNMNLTLKLHQEMV---------------NGMGDFGGIYKP------ 98
            T   LI G  +   +    +++++M+               +G+   G + +       
Sbjct: 258 VTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLA 317

Query: 99  --------NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTK 142
                    V  Y +L+DG C +  V    +LF  M D+G   N +        LC+  K
Sbjct: 318 MEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGK 377

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYC-LVGKVNVAIALFDSMARKGFMPDVFSYS 201
           L +A    E ++QR L P ++T+   L+G C  +  V+  + LF+SM  +G  P++ SYS
Sbjct: 378 LAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYS 437

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           +L++G C+   +E A+ + REM+  G            V P+    N  I  LC  G V 
Sbjct: 438 ILMDGICRAGGLEVALEIFREMVSRG------------VAPDVVVFNTLIRWLCIAGRVD 485

Query: 262 EVMELFPTLE 271
           E +E+F  LE
Sbjct: 486 EALEVFRELE 495



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 140/333 (42%), Gaps = 71/333 (21%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  +  +I+GLC+++ +D+   +       G   + +        LCK  ++ +A +L
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L+ M ++   P   TYT L++G    G+++ A+A+ + M  KG  P + +Y+V+I+G  K
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 210 NFNVEEAMNVSREMILNG---------------------------FKKIFNEMKLCNVVP 242
              VEEA  +  +M+ NG                           +K+          VP
Sbjct: 125 AGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVP 184

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-------------------------CEL 277
           +  T    IDGLCK G +LE  ++F    +                           CE 
Sbjct: 185 DVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCER 244

Query: 278 FVEIFN-----------SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
           F E+ N           +LI G  K  +   A  ++ ++     V   V YNI++  L K
Sbjct: 245 FHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCK 304

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            G++ +     L+MEE GC   V T++ LM  F
Sbjct: 305 AGRVAEAYATFLAMEERGCVATVVTYSALMDGF 337


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 197/462 (42%), Gaps = 108/462 (23%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  AL  FG   +    P + VTFN+L+ G C+E  + +A  L  +M    CRPNV T
Sbjct: 128 SKLPFALSTFGKITKLGLHP-DVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVT 186

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGIYK--------- 97
             TL+ GL R G +   + L   M               V+GM   G             
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKME 246

Query: 98  ------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------------------- 131
                 PNV  Y ++ID LCKD      ++LF EM++KGI                    
Sbjct: 247 EISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRW 306

Query: 132 -NANTLL----------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            +A  LL                       K+ K  EA  L + M+ RG+ P   TY+ +
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI---- 224
           ++G+C   +++ A  +F  MA KG  P++ +++ LI+GYC    +++ M +  EM     
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 225 -------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                              LN    +  EM    + P+  TC+  +DGLC NG + + +E
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 266 LFPTLEISNCEL-----------FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           +F  ++ S  +L            V+ +N LI G    G F  A EL+ ++  + +V D 
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + Y+ +I  L K+ ++ +   +  SM     + +V TF TL+
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 171/380 (45%), Gaps = 48/380 (12%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NS+I GFC  G   DA QL+++M      P+V T + LI    + G      +L+ EM
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           +       GI  PN   Y S+IDG CK   +D  + +F  M  KG     I  NTL+   
Sbjct: 352 LPR-----GII-PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   ++ +   LL  M + GL     TY  L++G+ LVG +N A+ L   M   G  PD+
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDI 465

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM-------------------------ILNGF---- 228
            +   L++G C N  +++A+ + + M                         +++G     
Sbjct: 466 VTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG 525

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                ++++ EM    +VP+T T +  IDGLCK   + E  ++F ++   +    V  F 
Sbjct: 526 KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFT 585

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LI G CK G  +   ELF ++  + +VA+ + Y  LI    K G I     +   M  +
Sbjct: 586 TLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISS 645

Query: 344 GCALDVDTFNTLMISFLQKE 363
           G   D  T   ++     KE
Sbjct: 646 GVYPDTITIRNMLTGLWSKE 665



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 139/265 (52%), Gaps = 27/265 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+N+LI GF + G++  A  L+++M + G  P++ TCDTL+ GL   G +   L++ 
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 83  QEMVNGMGD------FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           + M     D      F G+ +P+V  Y  LI GL  +    + ++L+ EM  +GI  +T+
Sbjct: 489 KVMQKSKKDLDASHPFNGV-EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LCK+++L EA ++ + M  +  +P + T+T L+NGYC  G+V+  + LF  M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            R+G + +  +Y  LI G+ K  N+  A+++ +EMI +G            V P+T T  
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG------------VYPDTITIR 655

Query: 249 IFIDGLCKNGHVLEVMELFPTLEIS 273
             + GL     +   + +   L++S
Sbjct: 656 NMLTGLWSKEELKRAVAMLEKLQMS 680



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 130/274 (47%), Gaps = 21/274 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLL----CKKTKLVEANRL 149
           P+V  +  L+  + +    D    L+ +M+ K I  +    T+L    C  +KL  A   
Sbjct: 77  PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 136

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              + + GL+P + T+  LL+G C+  +V+ A+ LF  M      P+V +++ L+NG C+
Sbjct: 137 FGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              + EA+ +   M+ +G +            P   T    +DG+CK G  +  ++L   
Sbjct: 197 EGRIVEAVALLDRMMEDGLQ------------PTQITYGTIVDGMCKIGDTVSALDLLRK 244

Query: 270 L-EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
           + EIS+    V I++++I   CK G    A  LF ++  K +  D+  YN +I      G
Sbjct: 245 MEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +      LL  M E   + DV T+N L+ +F+++
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALINAFVKE 338



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 109/241 (45%), Gaps = 24/241 (9%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L +A  L   M++    P +  +  L+     + + ++ I+L+  M RK    D++S+++
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 203 LINGYCKNFNVEEAMN--------------VSREMILNGF---------KKIFNEMKLCN 239
           LI  +C    +  A++              V+   +L+G            +F++M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
             P   T    ++GLC+ G ++E + L   +     +     + +++ G CK G    A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSAL 239

Query: 300 ELFNKL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
           +L  K+    +++ +VV Y+ +I +L K+G+      L   M+E G   D+ T+N++++ 
Sbjct: 240 DLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 359 F 359
           F
Sbjct: 300 F 300



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  A   F S   + + P N VTF +LI G+C  G + D  +L  +M   G   N  T
Sbjct: 560 SRLDEATQMFDSMGSKSFSP-NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL 110
             TLI G R+ GN+N  L + QEM++      G+Y P+     +++ GL
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMIS-----SGVY-PDTITIRNMLTGL 661


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 178/364 (48%), Gaps = 29/364 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T K+  A+  F   + R  R  + ++FN L+ G C  G I  A +  +KM    C PNV 
Sbjct: 58  TGKLERAMALFQEMLDR--RSHDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVI 114

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   LI GL +   ++  ++L + M    G       P+V  Y  L+DGLCK+  V    
Sbjct: 115 TYSVLIDGLCKANRVSQAVELLESM-KARG-----CSPDVITYTILVDGLCKESKVAAAW 168

Query: 121 DLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           ++  EM D G     +  N+LL   C+  ++ +A  L+  M  RG  P + TY  L++G 
Sbjct: 169 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 228

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C VG+V  A A+   M  KG  PD+  Y++LING CK   V+E++ + R  +  G K   
Sbjct: 229 CKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIK--- 285

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                    P+  T +  I GLC++  + E   L   ++   C   V ++++LI G CK 
Sbjct: 286 ---------PDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKA 336

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  + A +L+  ++     ADVV Y+ LI  L K G++ + + LL  M   G      T+
Sbjct: 337 GKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTY 396

Query: 353 NTLM 356
           N+L+
Sbjct: 397 NSLI 400



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 128/268 (47%), Gaps = 22/268 (8%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLLC---KKTKLVEANR 148
           +PNV  Y SLIDGLCK+   D+ ++LF  MK        +  NTLL    +  KL  A  
Sbjct: 7   EPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMA 66

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L + M+ R  + VI ++  L+ G C  GK+  A+  F  M  +   P+V +YSVLI+G C
Sbjct: 67  LFQEMLDRRSHDVI-SFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVLIDGLC 124

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K   V +A+            ++   MK     P+  T  I +DGLCK   V    E+  
Sbjct: 125 KANRVSQAV------------ELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLR 172

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +  + C   +  +NSL+ G C+      A  L   ++C+    +VV Y  LI  L K G
Sbjct: 173 EMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVG 232

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++K    +L  M + G   D+  +N L+
Sbjct: 233 RVKDACAMLADMIDKGGTPDLMIYNMLI 260



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 124/272 (45%), Gaps = 51/272 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+NSL+ G C    + DA  L++ M   GC PNV T  TLI GL + G +     + 
Sbjct: 182 NLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAML 241

Query: 83  QEMVN--GMGDF----------------------------GGIYKPNVFCYGSLIDGLCK 112
            +M++  G  D                             GGI KP+V  Y S+I GLC+
Sbjct: 242 ADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGI-KPDVVTYSSVIYGLCR 300

Query: 113 DRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFT 164
              +D+   L + +K +G   + +L        CK  K+ EA  L E+M   G +  + T
Sbjct: 301 SNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVT 360

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y+ L++G C  G+V+ A  L   M R G  P   +Y+ LI G C   +++EA+       
Sbjct: 361 YSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAI------- 413

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
                ++  EM+  N  P   T NI I G+C+
Sbjct: 414 -----ELVEEMERSNCAPSAVTYNILIHGMCR 440



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 126/249 (50%), Gaps = 27/249 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N LI G C    + ++  L+++  + G +P+V T  ++I GL R+  ++   +L    V
Sbjct: 256 YNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL-YV 314

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
              G       P+V  Y +LIDGLCK   VD+  DL+  M   G +A+ +        LC
Sbjct: 315 KSRG-----CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLC 369

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  ++ EA+ LL  M++ G  P   TY  L+ G C +  ++ AI L + M R    P   
Sbjct: 370 KAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAV 429

Query: 199 SYSVLINGYCKNFNVEE-AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           +Y++LI+G C+   V+  A++  +EMI NG            V+P+  T +I ++GL K+
Sbjct: 430 TYNILIHGMCRMERVDSAALDYFQEMIDNG------------VIPDHITYSILLEGLKKS 477

Query: 258 GHVLEVMEL 266
             + E+  L
Sbjct: 478 KDLHELRHL 486



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 14/204 (6%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M   G  P + TY  L++G C   + + A  LF+ M      P + +Y+ L++G  +   
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           +E AM + +EM+      +              + NI + GLC+ G +   +E F  ++ 
Sbjct: 61  LERAMALFQEMLDRRSHDV-------------ISFNILVTGLCRAGKIETALEFFRKMD- 106

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
             C   V  ++ LI G CK      A EL   +  +    DV+ Y IL+  L KE ++  
Sbjct: 107 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA 166

Query: 333 ENYLLLSMEENGCALDVDTFNTLM 356
              +L  M + GC  ++ T+N+L+
Sbjct: 167 AWEVLREMLDAGCVPNLVTYNSLL 190


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 181/386 (46%), Gaps = 36/386 (9%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTT 61
           ++     AFG  ++  +R +N+V  N L+ G C    + +A   L+++M  FGC PNV +
Sbjct: 105 RIEHGFAAFGLILKTGWR-VNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVS 163

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
           C+TL+ GL     +   L+L   M     D GG   PNV  Y ++IDGLCK + VD+ + 
Sbjct: 164 CNTLLKGLCNEKRVEEALELLHTMAE---DGGGNCTPNVVTYNTIIDGLCKAQAVDRAEG 220

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           +   M DKG+  + +        LCK   +  A  +L+ M+ +G+ P + TY  +++G C
Sbjct: 221 VLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLC 280

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---- 229
               V+ A  +   M  KG  PDV +Y+ +I+G CK   V+ A  V + MI    K    
Sbjct: 281 KAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQ 340

Query: 230 -------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                              +   EM    + P+  T ++ +D LCKNG   E  ++F  +
Sbjct: 341 TYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCM 400

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                +  V I+  L+ G    G     ++L + +    +  +   +NI++ A  K+  I
Sbjct: 401 IRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMI 460

Query: 331 KKENYLLLSMEENGCALDVDTFNTLM 356
            +  ++   M ++G + DV T+  L+
Sbjct: 461 DEAMHIFSRMSQHGLSPDVVTYGILI 486



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 182/372 (48%), Gaps = 39/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-LTLKL 81
           N+  FN ++  +  +  I +A  +  +M+  G  P+V T   LI  L + G ++   LK 
Sbjct: 443 NNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKF 502

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           +Q + +G+        PN   + SL+ GLC     ++ ++LF EM D+G+  N +     
Sbjct: 503 NQMINDGV-------TPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTI 555

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC + +++ A RL++ M + G+ P + +Y  L+ G+CL G+ + A  L D M   G 
Sbjct: 556 MCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGL 615

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG----------------FKKIFNEMK- 236
            PD+ SY  L+ GYCK   ++ A  + REM+  G                  + F+E K 
Sbjct: 616 KPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKE 675

Query: 237 -LCNVVP-----ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
              N++      + +T NI ++GLCK   V E  ++F +L   +    +  F  +I    
Sbjct: 676 LYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLF 735

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A +LF  +    LV +VV Y I++  + +EG + + + L L+ME++GC  D  
Sbjct: 736 KGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSV 795

Query: 351 TFNTLMISFLQK 362
             N ++ S L +
Sbjct: 796 MLNAIIRSLLGR 807



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 159/363 (43%), Gaps = 37/363 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N++I G C    +  A  +++ M     +P++ T + LI G   TG     ++  +E
Sbjct: 305 VTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEE 364

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M      +     P+V  Y  L+D LCK+    + + +F  M  KGI  N  +       
Sbjct: 365 M------YARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHG 418

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
              +  + +   LL+LM+  G++P  + +  +L  Y     ++ A+ +F  M++ G  PD
Sbjct: 419 YAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPD 478

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFN 233
           V +Y +LI+  CK   V++A+    +MI +G                        +++F 
Sbjct: 479 VVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFF 538

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM    V P     N  +  LC  G V+    L  ++E       V  +N+LI G C  G
Sbjct: 539 EMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAG 598

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A++L + +    L  D+++Y+ L+    K G+I     L   M   G      T++
Sbjct: 599 RTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYS 658

Query: 354 TLM 356
           T++
Sbjct: 659 TIL 661



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 14/202 (6%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY+ L   +C +G++    A F  + + G+  +    + L+NG C    V+EAM
Sbjct: 86  VRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAM 145

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS---N 274
           ++           +   M     +P   +CN  + GLC    V E +EL  T+      N
Sbjct: 146 DI-----------LLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGN 194

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V  +N++I G CK    + A  +   +  K +  DVV Y+ +I  L K   + +  
Sbjct: 195 CTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAE 254

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            +L  M + G   DV T+NT++
Sbjct: 255 GVLQHMIDKGVKPDVVTYNTII 276


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 180/368 (48%), Gaps = 37/368 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LIK +   G +  A  +  +M   G +P+V T  T+I  L R G M+  +    E 
Sbjct: 409 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAM----EK 464

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            N M D G    P+ + Y  LI G C    + + K+L  E+ + G++ + +        L
Sbjct: 465 FNQMIDQG--VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNL 522

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++++A  + +L +  GL+P    Y+ L++GYCLVGK+  A+ +FD+M   G  P+V
Sbjct: 523 CKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 582

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI-----------------------FNE 234
             Y  L+NGYCK   ++E +++ REM+  G K                         F+E
Sbjct: 583 VVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHE 642

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    +  +  T NI + GL KN    E + LF  L   N ++ +   N++I G  +   
Sbjct: 643 MTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRR 702

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A +LF  +S   LV +VV Y+I+I  L KEG +++   +  SM+  GC  +    N 
Sbjct: 703 VEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNH 762

Query: 355 LMISFLQK 362
           ++   L+K
Sbjct: 763 VVRELLKK 770



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 172/382 (45%), Gaps = 37/382 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTL 65
           AL  FG  +R   R +N +  N L++GFC      +A   L+ +    GC P+V +   L
Sbjct: 143 ALAFFGQLLRTGLR-VNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSIL 201

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L   G       L + M  G    G +  PNV  Y ++IDG  K+  V++  DLF E
Sbjct: 202 LKSLCDQGKSGQADDLLRMMAEG----GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKE 257

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M  +GI  + +        LCK   + +A   L  M+ + + P  +TY  L+ GY   G+
Sbjct: 258 MVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQ 317

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREM 223
              A+ +F  M R   +PDV + S+L+   CK   ++EA +V              S  +
Sbjct: 318 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 377

Query: 224 ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +LNG+           +F+ M    + P+ +T N+ I      G + + M +F  +    
Sbjct: 378 MLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHG 437

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            +  V  + ++I   C+ G  + A E FN++  + +  D  AYN LI      G + K  
Sbjct: 438 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 497

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L+  +  NG  LD+  F++++
Sbjct: 498 ELISEIMNNGMHLDIVFFSSII 519



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 163/365 (44%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +N++I GF  EG++  A  L K+M   G  P++ T ++++  L +   M+      
Sbjct: 231 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 290

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MVN          PN + Y +LI G        +   +F EM+   I  + +      
Sbjct: 291 RQMVNKR------VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 344

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  K+ EA  + + M  +G NP +F+Y  +LNGY   G +     LFD M   G  
Sbjct: 345 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIA 404

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PD ++++VLI  Y     +++AM +  EM  +G K                       + 
Sbjct: 405 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 464

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           FN+M    V P+ +  N  I G C +G +L+  EL   +  +   L +  F+S+I   CK
Sbjct: 465 FNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 524

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A  +F+      L  D V Y++L+      G+++K   +  +M   G   +V  
Sbjct: 525 LGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVV 584

Query: 352 FNTLM 356
           + TL+
Sbjct: 585 YCTLV 589



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 154/362 (42%), Gaps = 38/362 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A+  F   I +   P +   +N LI+GFC  G++  A +L+ ++   G   ++   
Sbjct: 457 KMDDAMEKFNQMIDQGVAP-DKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFF 515

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            ++I  L + G +     +    VN      G++ P+   Y  L+DG C    +++   +
Sbjct: 516 SSIINNLCKLGRVMDAQNIFDLTVNV-----GLH-PDAVVYSMLMDGYCLVGKMEKALRV 569

Query: 123 FMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F  M   GI  N ++        CK  ++ E   L   M+QRG+ P    Y+ +++G   
Sbjct: 570 FDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQ 629

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN---------FNVEEAMNVSREMI- 224
            G+   A   F  M   G   D+ +Y++++ G  KN         F    AMNV   +I 
Sbjct: 630 AGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIIT 689

Query: 225 ----LNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
               ++G          K +F  +    +VP   T +I I  L K G V E  ++F +++
Sbjct: 690 LNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQ 749

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            + CE    + N ++R   K      A    +K+  +N   + +   +L+     +G  +
Sbjct: 750 NAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCR 809

Query: 332 KE 333
           ++
Sbjct: 810 EQ 811



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 125/272 (45%), Gaps = 23/272 (8%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANTL--------LCKKTKLVEANRL 149
           N+     L++G C+ +  D+  D+ +    + G   +          LC + K  +A+ L
Sbjct: 158 NIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 217

Query: 150 LELMMQRGL--NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           L +M + G   +P +  Y  +++G+   G VN A  LF  M ++G  PD+ +Y+ +++  
Sbjct: 218 LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHAL 277

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK   +++A    R+M+               V+P  +T N  I G    G   E + +F
Sbjct: 278 CKARAMDKAEAFLRQMVNK------------RVLPNNWTYNNLIYGYSSTGQWKEAVRVF 325

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +   +    V   + L+   CK+G  + A ++F+ ++ K    DV +YNI+++    +
Sbjct: 326 KEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 385

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           G +     L   M  +G A D  TFN L+ ++
Sbjct: 386 GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 417



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 130/284 (45%), Gaps = 33/284 (11%)

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEA 146
           +  P    Y  L+D   +    +     F ++   G+  N ++        C+  +  EA
Sbjct: 119 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEA 178

Query: 147 NRLLELMMQR----GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM--PDVFSY 200
              L++++ R    G  P +F+Y+ LL   C  GK   A  L   MA  G +  P+V +Y
Sbjct: 179 ---LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAY 235

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + +I+G+ K  +V +A ++ +EM+  G            + P+  T N  +  LCK    
Sbjct: 236 NTVIDGFFKEGDVNKACDLFKEMVQRG------------IPPDLVTYNSVVHALCK-ARA 282

Query: 261 LEVMELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           ++  E F   ++ N  +      +N+LI G    G ++ A  +F ++   +++ DVV  +
Sbjct: 283 MDKAEAF-LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLS 341

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +L+ +L K G+IK+   +  +M   G   DV ++N ++  +  K
Sbjct: 342 MLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 385



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 13/206 (6%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R L+P   TY  L++      +  +A+A F  + R G   ++   + L+ G+C+    +E
Sbjct: 118 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 177

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN- 274
           A+++           + +       VP+ F+ +I +  LC  G   +  +L   +     
Sbjct: 178 ALDI-----------LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA 226

Query: 275 -CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            C   V  +N++I G  K G    A +LF ++  + +  D+V YN ++HAL K   + K 
Sbjct: 227 VCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKA 286

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
              L  M       +  T+N L+  +
Sbjct: 287 EAFLRQMVNKRVLPNNWTYNNLIYGY 312


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 197/462 (42%), Gaps = 108/462 (23%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  AL  FG   +    P + VTFN+L+ G C+E  + +A  L  +M    CRPNV T
Sbjct: 128 SKLPFALSTFGKLTKLGLHP-DVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVT 186

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGIYK--------- 97
             TL+ GL R G +   + L   M               V+GM   G             
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME 246

Query: 98  ------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------------------- 131
                 PNV  Y ++ID LCKD      ++LF EM++KGI                    
Sbjct: 247 EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRW 306

Query: 132 -NANTLL----------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            +A  LL                       K+ K  EA  L + M+ RG+ P   TY+ +
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI---- 224
           ++G+C   +++ A  +F  MA KG  P++ +++ LI+GYC    +++ M +  EM     
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 225 -------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                              LN    +  EM    + P+  TC+  +DGLC NG + + +E
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 266 LFPTLEISNCEL-----------FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           +F  ++ S  +L            V+ +N LI G    G F  A EL+ ++  + +V D 
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + Y+ +I  L K+ ++ +   +  SM     + +V TF TL+
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 171/380 (45%), Gaps = 48/380 (12%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NS+I GFC  G   DA QL+++M      P+V T + LI    + G      +L+ EM
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           +       GI  PN   Y S+IDG CK   +D  + +F  M  KG     I  NTL+   
Sbjct: 352 LPR-----GII-PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   ++ +   LL  M + GL     TY  L++G+ LVG +N A+ L   M   G  PD+
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDI 465

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM-------------------------ILNGF---- 228
            +   L++G C N  +++A+ + + M                         +++G     
Sbjct: 466 VTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG 525

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                ++++ EM    +VP+T T +  IDGLCK   + E  ++F ++   +    V  F 
Sbjct: 526 KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFT 585

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LI G CK G  +   ELF ++  + +VA+ + Y  LI    K G I     +   M  +
Sbjct: 586 TLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISS 645

Query: 344 GCALDVDTFNTLMISFLQKE 363
           G   D  T   ++     KE
Sbjct: 646 GVYPDTITIRNMLTGLWSKE 665



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 139/265 (52%), Gaps = 27/265 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+N+LI GF + G++  A  L+++M + G  P++ TCDTL+ GL   G +   L++ 
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 83  QEMVNGMGD------FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           + M     D      F G+ +P+V  Y  LI GL  +    + ++L+ EM  +GI  +T+
Sbjct: 489 KVMQKSKKDLDASHPFNGV-EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LCK+++L EA ++ + M  +  +P + T+T L+NGYC  G+V+  + LF  M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            R+G + +  +Y  LI G+ K  N+  A+++ +EMI +G            V P+T T  
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG------------VYPDTITIR 655

Query: 249 IFIDGLCKNGHVLEVMELFPTLEIS 273
             + GL     +   + +   L++S
Sbjct: 656 NMLTGLWSKEELKRAVAMLEKLQMS 680



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 154/343 (44%), Gaps = 29/343 (8%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           L  GF     + DA  L   M      P+V     L+  + R    +L + L+Q+M    
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---CKKT 141
                  + +++ +  LI   C    +      F ++   G++      NTLL   C + 
Sbjct: 110 ------IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVED 163

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           ++ EA  L   M +    P + T+T L+NG C  G++  A+AL D M   G  P   +Y 
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            +++G CK  +   A+N+ R+M            ++ +++P     +  ID LCK+G   
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKM-----------EEVSHIIPNVVIYSAIIDSLCKDGRHS 272

Query: 262 EVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +   LF   E+    +F ++F  NS+I G C  G +  A +L  ++  + +  DVV YN 
Sbjct: 273 DAQNLFT--EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNA 330

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           LI+A  KEG+  +   L   M   G   +  T+++++  F ++
Sbjct: 331 LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  A   F S   + + P N VTF +LI G+C  G + D  +L  +M   G   N  T
Sbjct: 560 SRLDEATQMFDSMGSKSFSP-NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL 110
             TLI G R+ GN+N  L + QEM++      G+Y P+     +++ GL
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMIS-----SGVY-PDTITIRNMLTGL 661


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 181/343 (52%), Gaps = 26/343 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L +V+   L+ GFC EG + +A + V +++  G  P+  T ++L+ G  R GN+N  L  
Sbjct: 226 LTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDAL-- 283

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             ++V+ M + G  + P+V+ Y SLI G+CK    ++  ++  +M  +  + NT+     
Sbjct: 284 --DIVDFMIEKG--FDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTL 339

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+ ++  A  L  +++ +GL P + T+  L+ G CL    ++A+ +F+ M  KG 
Sbjct: 340 ISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGC 399

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD F+YS+LI+  C    ++EA+ + +EM  +G  +        N V      N  IDG
Sbjct: 400 KPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCAR--------NAV----VYNTLIDG 447

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK+  + +  E+F  +E+         +N+LI G CK    E AS+L +++  + L  D
Sbjct: 448 LCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPD 507

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              YN L+    + G I+K   ++ +M  NGC  D+ T+ TL+
Sbjct: 508 KFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLI 550



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 178/369 (48%), Gaps = 37/369 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+  TFN LIK  C    +R A  ++++MA  G +P+  T  TL+ G    G++N  LK+
Sbjct: 156 LDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKM 215

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            ++M+       G    NV     L++G CK+  V++     +E+ ++G + + +     
Sbjct: 216 KKQMLGY-----GCLLTNV-SVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSL 269

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+   + +A  +++ M+++G +P ++TY  L++G C +G+   AI +   M  +  
Sbjct: 270 VNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILREC 329

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KK 230
            P+  +Y+ LI+  CK   +E A +++R ++  G                         +
Sbjct: 330 SPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAME 389

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F EMK     P+ FT +I ID LC    + E + L   +E S C     ++N+LI G C
Sbjct: 390 MFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLC 449

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K    E A E+F+++    +    V YN LI  L K  ++++ + L+  M   G   D  
Sbjct: 450 KSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKF 509

Query: 351 TFNTLMISF 359
           T+N+L+  F
Sbjct: 510 TYNSLLTYF 518



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 148/316 (46%), Gaps = 41/316 (12%)

Query: 22  LNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           L DV TFN+LI+G C+  N   A ++ ++M   GC+P+  T   LI  L     +   L 
Sbjct: 365 LPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALM 424

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L +EM     +  G  + N   Y +LIDGLCK R ++  +++F +M+  G++ +++    
Sbjct: 425 LLKEM-----ESSGCAR-NAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNT 478

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  ++ EA++L++ M+  GL P  FTY  LL  +C VG +  A  +  +MA  G
Sbjct: 479 LIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNG 538

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------K 229
             PD+F+Y  LI G C+   V+ A  + R + + G                         
Sbjct: 539 CEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGM 598

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIR 287
           ++F EM   +  P+  T  I   GLC  G  ++    F T+E+    +  E   F  L  
Sbjct: 599 RLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDF-TVEMLEKGILPEFPSFGFLAE 657

Query: 288 GCCKFGIFEIASELFN 303
           G C   + +   EL N
Sbjct: 658 GLCSLSMEDTLIELIN 673



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 152/321 (47%), Gaps = 28/321 (8%)

Query: 44  SQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCY 103
           + L+K++ + G  PN TT  TLI        +   LK+   + N +G     +KP+   Y
Sbjct: 75  TTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKI---LENELG-----FKPDTNFY 126

Query: 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTL------LCKKTKLVEANRLLELMMQ 155
              ++ L +D  +   + L  +M ++GI  + +T       LCK  +L  A  +LE M  
Sbjct: 127 NIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMAN 186

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
            GL P   T+T L+ G+   G +N A+ +   M   G +    S  VL+NG+CK   VEE
Sbjct: 187 HGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEE 246

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A+    E+   GF             P+  T N  ++G C+ G+V + +++   +     
Sbjct: 247 ALRFVLEVSEEGFS------------PDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGF 294

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           +  V  +NSLI G CK G FE A E+  ++  +    + V YN LI AL KE +I+    
Sbjct: 295 DPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATD 354

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           L   +   G   DV TFNTL+
Sbjct: 355 LARILVSKGLLPDVCTFNTLI 375



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           L +K+  + +V DV  +N+LI AL K  Q++    +L  M  +G   D  TF TLM  F+
Sbjct: 145 LHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFI 204

Query: 361 QK 362
           ++
Sbjct: 205 EE 206


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 178/368 (48%), Gaps = 37/368 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LIK +   G +  A  +  +M   G +P+V T  T+I  L R G M+  +    E 
Sbjct: 399 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAM----EK 454

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            N M D G    P+ + Y  LI G C    + + K+L  E+ + G++ + +        L
Sbjct: 455 FNQMIDQG--VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNL 512

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++++A  + +L +  GL+P    Y  L++GYCLVGK+  A+ +FD+M   G  P+V
Sbjct: 513 CKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 572

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI-----------------------FNE 234
             Y  L+NGYCK   ++E +++ REM+  G K                         F+E
Sbjct: 573 VGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHE 632

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    +  +  T NI + GL KN    E + LF  L   N ++ +   N++I G  +   
Sbjct: 633 MTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRR 692

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A +LF  +S   LV  VV Y+I+I  L KEG +++   +  SM+  GC  +    N 
Sbjct: 693 VEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNH 752

Query: 355 LMISFLQK 362
           ++   L+K
Sbjct: 753 VVRELLKK 760



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 172/382 (45%), Gaps = 37/382 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTL 65
           AL  FG  +R   R +N +  N L++GFC      +A   L+ +    GC P+V +   L
Sbjct: 133 ALAFFGQLLRTGLR-VNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSIL 191

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L   G       L + M  G    G +  PNV  Y ++IDG  K+  V++  DLF E
Sbjct: 192 LKSLCDQGKSGQADDLLRMMAEG----GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKE 247

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M  +GI  + +        LCK   + +A   L  M+ + + P  +TY  L+ GY   G+
Sbjct: 248 MVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQ 307

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREM 223
              A+ +F  M R   +PDV + S+L+   CK   ++EA +V              S  +
Sbjct: 308 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 367

Query: 224 ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +LNG+           +F+ M    + P+ +T N+ I      G + + M +F  +    
Sbjct: 368 MLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHG 427

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            +  V  + ++I   C+ G  + A E FN++  + +  D  AYN LI      G + K  
Sbjct: 428 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 487

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L+  +  NG  LD+  F++++
Sbjct: 488 ELISEIMNNGMHLDIVFFSSII 509



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 163/365 (44%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +N++I GF  EG++  A  L K+M   G  P++ T ++++  L +   M+      
Sbjct: 221 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 280

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MVN          PN + Y +LI G        +   +F EM+   I  + +      
Sbjct: 281 RQMVNKR------VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 334

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  K+ EA  + + M  +G NP +F+Y  +LNGY   G +     LFD M   G  
Sbjct: 335 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIA 394

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PD ++++VLI  Y     +++AM +  EM  +G K                       + 
Sbjct: 395 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 454

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           FN+M    V P+ +  N  I G C +G +L+  EL   +  +   L +  F+S+I   CK
Sbjct: 455 FNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 514

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A  +F+      L  D V YN+L+      G+++K   +  +M   G   +V  
Sbjct: 515 LGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVG 574

Query: 352 FNTLM 356
           + TL+
Sbjct: 575 YGTLV 579



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 137/335 (40%), Gaps = 56/335 (16%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ V F+S+I   C  G + DA  +       G  P+    + L+ G    G M   L++
Sbjct: 500 LDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRV 559

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
              MV+      GI +PNV  YG+L++G CK   +D+   LF EM               
Sbjct: 560 FDAMVSA-----GI-EPNVVGYGTLVNGYCKIGRIDEGLSLFREM--------------- 598

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                       +QRG+ P    Y+ +++G    G+   A   F  M   G   D+ +Y+
Sbjct: 599 ------------LQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYN 646

Query: 202 VLINGYCKN---------FNVEEAMNVSREMI-----LNGF---------KKIFNEMKLC 238
           +++ G  KN         F    AMNV   +I     ++G          K +F  +   
Sbjct: 647 IVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRS 706

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            +VP   T +I I  L K G V E  ++F +++ + CE    + N ++R   K      A
Sbjct: 707 RLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRA 766

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
               +K+  +N   + +   +L+     +G  +++
Sbjct: 767 GAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQ 801



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 125/272 (45%), Gaps = 23/272 (8%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANTL--------LCKKTKLVEANRL 149
           N+     L++G C+ +  D+  D+ +    + G   +          LC + K  +A+ L
Sbjct: 148 NIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 207

Query: 150 LELMMQRGL--NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           L +M + G   +P +  Y  +++G+   G VN A  LF  M ++G  PD+ +Y+ +++  
Sbjct: 208 LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHAL 267

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK   +++A    R+M+               V+P  +T N  I G    G   E + +F
Sbjct: 268 CKARAMDKAEAFLRQMVNK------------RVLPNNWTYNNLIYGYSSTGQWKEAVRVF 315

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +   +    V   + L+   CK+G  + A ++F+ ++ K    DV +YNI+++    +
Sbjct: 316 KEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 375

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           G +     L   M  +G A D  TFN L+ ++
Sbjct: 376 GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 407



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 130/284 (45%), Gaps = 33/284 (11%)

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEA 146
           +  P    Y  L+D   +    +     F ++   G+  N ++        C+  +  EA
Sbjct: 109 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEA 168

Query: 147 NRLLELMMQR----GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM--PDVFSY 200
              L++++ R    G  P +F+Y+ LL   C  GK   A  L   MA  G +  P+V +Y
Sbjct: 169 ---LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAY 225

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + +I+G+ K  +V +A ++ +EM+  G            + P+  T N  +  LCK    
Sbjct: 226 NTVIDGFFKEGDVNKACDLFKEMVQRG------------IPPDLVTYNSVVHALCK-ARA 272

Query: 261 LEVMELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           ++  E F   ++ N  +      +N+LI G    G ++ A  +F ++   +++ DVV  +
Sbjct: 273 MDKAEAF-LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLS 331

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +L+ +L K G+IK+   +  +M   G   DV ++N ++  +  K
Sbjct: 332 MLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 375



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 13/206 (6%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R L+P   TY  L++      +  +A+A F  + R G   ++   + L+ G+C+    +E
Sbjct: 108 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 167

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN- 274
           A+++           + +       VP+ F+ +I +  LC  G   +  +L   +     
Sbjct: 168 ALDI-----------LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA 216

Query: 275 -CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            C   V  +N++I G  K G    A +LF ++  + +  D+V YN ++HAL K   + K 
Sbjct: 217 VCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKA 276

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
              L  M       +  T+N L+  +
Sbjct: 277 EAFLRQMVNKRVLPNNWTYNNLIYGY 302


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 190/391 (48%), Gaps = 56/391 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +N+++  FC EG   D+ +LV+KM   G  P++ T ++ I+ L + G +    ++ 
Sbjct: 216 NKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIF 275

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK--DKGINANTL---- 136
            +M   + ++ G+ +PN   Y  ++ G CK  L++  K LF  ++  D  ++  +     
Sbjct: 276 SDME--LDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWL 333

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L +  K +EA  +L+ M+ +G+ P I++Y  L++G C +G ++ A  +   M R G  
Sbjct: 334 QGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVS 393

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------FKKIFNEMKLCNVVP- 242
           PD  +Y  L++GYC    V+ A ++ +EM+ N               ++N  ++      
Sbjct: 394 PDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEEL 453

Query: 243 -----------ETFTCNIFIDGLCKNGHVLEVMELFPTLEI------------------- 272
                      +T TCNI +DGLC +G + + +E+   + +                   
Sbjct: 454 LRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDD 513

Query: 273 ----SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
               +NC   +  +++L+ G CK G F  A  LF ++  + L  D +AYNI IH   K+G
Sbjct: 514 SLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQG 573

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +I     +L  ME+ GC   ++T+N+L++  
Sbjct: 574 KISSAFRVLKDMEKKGCHKSLETYNSLILGL 604



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 163/343 (47%), Gaps = 30/343 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI+  C    +  A +L  +M   GC+PN  T   L+ G  + G  +  L    E+
Sbjct: 149 TFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGL----EL 204

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
           +N M  FG +  PN   Y +++   C++   D ++ L  +M+++G+  +        + L
Sbjct: 205 LNSMESFGVL--PNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISAL 262

Query: 138 CKKTKLVEANRL---LELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           CK+ K+++A+R+   +EL    GL  P   TY  +L G+C VG +  A  LF+S+     
Sbjct: 263 CKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +  + SY++ + G  ++    EA  V ++MI  G            + P  ++ NI +DG
Sbjct: 323 LVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKG------------IGPSIYSYNILMDG 370

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G + +   +   ++ +        +  L+ G C  G  + A  L  ++   N + +
Sbjct: 371 LCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPN 430

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               NIL+H+L   G+I +   LL  M E G  LD  T N ++
Sbjct: 431 AYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIV 473



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 149/346 (43%), Gaps = 30/346 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N L++    E  +   S L K M   G  P   T + LI  L  +  ++   +L  EM 
Sbjct: 115 YNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMP 174

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------C 138
                     KPN F +G L+ G CK  L D+  +L   M+  G+  N ++        C
Sbjct: 175 EKG------CKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFC 228

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM---- 194
           ++ +  ++ +L+E M + GL P I T+   ++  C  GKV  A  +F  M    ++    
Sbjct: 229 REGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y++++ G+CK   +E+A            K +F  ++  + +    + NI++ GL
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDA------------KTLFESIRENDDLVSLQSYNIWLQGL 336

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            ++G  +E   +   +        +  +N L+ G CK G+   A  +   +    +  D 
Sbjct: 337 VRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDA 396

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           V Y  L+H     G++     LL  M  N C  +  T N L+ S  
Sbjct: 397 VTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLW 442



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 143/352 (40%), Gaps = 50/352 (14%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-----------------------CRPN 58
           L+ VT N ++ G C  G +  A ++VK M   G                       C P+
Sbjct: 464 LDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPD 523

Query: 59  VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ 118
           + T  TL+ GL + G       L  EM+      G   +P+   Y   I   CK   +  
Sbjct: 524 LITYSTLLNGLCKAGRFAEAKTLFAEMM------GEKLQPDSLAYNIFIHHFCKQGKISS 577

Query: 119 TKDLFMEMKDKGINA-----NTLLCK---KTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
              +  +M+ KG +      N+L+     K ++ E + L++ M ++G++P I TY   + 
Sbjct: 578 AFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQ 637

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
             C  GKV  A  L D M +K   P+VFS+  LI  +CK  + + A  V    +      
Sbjct: 638 YLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAV------ 691

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
                 +C      ++  +  + L   G +L+  EL   +     EL   ++  L+   C
Sbjct: 692 -----SICGQKEGLYS--LMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVVSLC 744

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           K    E+AS + +K+  K    D  A   +I  LGK G  K+ N     M E
Sbjct: 745 KKDELEVASGILHKMIDKGYGFDPAALMPVIDGLGKMGNKKEANNFAEKMME 796



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 124/287 (43%), Gaps = 54/287 (18%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQR 156
           KP ++ Y  L++   ++R V+    L+ +M         +LC                  
Sbjct: 109 KPGIYLYNVLLESCIRERRVEFVSWLYKDM---------VLC------------------ 141

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G++P  +T+  L+   C    V+ A  LFD M  KG  P+ F++ +L+ GYCK    ++ 
Sbjct: 142 GISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKG 201

Query: 217 MNVSREM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDG 253
           + +   M              I++ F         +K+  +M+   +VP+  T N  I  
Sbjct: 202 LELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISA 261

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVE----IFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           LCK G VL+   +F  +E+             +N +++G CK G+ E A  LF  +   +
Sbjct: 262 LCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIREND 321

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +  + +YNI +  L + G+  +   +L  M + G    + ++N LM
Sbjct: 322 DLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILM 368



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 1/143 (0%)

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
           RE  +     ++ +M LC + PET+T N+ I  LC +  V    ELF  +    C+    
Sbjct: 124 RERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEF 183

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            F  L+RG CK G+ +   EL N +    ++ + V YN ++ +  +EG+      L+  M
Sbjct: 184 TFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKM 243

Query: 341 EENGCALDVDTFNTLMISFLQKE 363
            E G   D+ TFN+  IS L KE
Sbjct: 244 REEGLVPDIVTFNS-RISALCKE 265


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 197/462 (42%), Gaps = 108/462 (23%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  AL  FG   +    P + VTFN+L+ G C+E  + +A  L  +M    CRPNV T
Sbjct: 128 SKLPFALSTFGKITKLGLHP-DVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVT 186

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGIYK--------- 97
             TL+ GL R G +   + L   M               V+GM   G             
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME 246

Query: 98  ------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------------------- 131
                 PNV  Y ++ID LCKD      ++LF EM++KGI                    
Sbjct: 247 EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRW 306

Query: 132 -NANTLL----------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            +A  LL                       K+ K  EA  L + M+ RG+ P   TY+ +
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI---- 224
           ++G+C   +++ A  +F  MA KG  P++ +++ LI+GYC    +++ M +  EM     
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 225 -------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                              LN    +  EM    + P+  TC+  +DGLC NG + + +E
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 266 LFPTLEISNCEL-----------FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           +F  ++ S  +L            V+ +N LI G    G F  A EL+ ++  + +V D 
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + Y+ +I  L K+ ++ +   +  SM     + +V TF TL+
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 171/380 (45%), Gaps = 48/380 (12%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NS+I GFC  G   DA QL+++M      P+V T + LI    + G      +L+ EM
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           +       GI  PN   Y S+IDG CK   +D  + +F  M  KG     I  NTL+   
Sbjct: 352 LPR-----GII-PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   ++ +   LL  M + GL     TY  L++G+ LVG +N A+ L   M   G  PD+
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDI 465

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM-------------------------ILNGF---- 228
            +   L++G C N  +++A+ + + M                         +++G     
Sbjct: 466 VTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG 525

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                ++++ EM    +VP+T T +  IDGLCK   + E  ++F ++   +    V  F 
Sbjct: 526 KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFT 585

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LI G CK G  +   ELF ++  + +VA+ + Y  LI    K G I     +   M  +
Sbjct: 586 TLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISS 645

Query: 344 GCALDVDTFNTLMISFLQKE 363
           G   D  T   ++     KE
Sbjct: 646 GVYPDTITIRNMLTGLWSKE 665



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 139/265 (52%), Gaps = 27/265 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+N+LI GF + G++  A  L+++M + G  P++ TCDTL+ GL   G +   L++ 
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 83  QEMVNGMGD------FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           + M     D      F G+ +P+V  Y  LI GL  +    + ++L+ EM  +GI  +T+
Sbjct: 489 KVMQKSKKDLDASHPFNGV-EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LCK+++L EA ++ + M  +  +P + T+T L+NGYC  G+V+  + LF  M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            R+G + +  +Y  LI G+ K  N+  A+++ +EMI +G            V P+T T  
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG------------VYPDTITIR 655

Query: 249 IFIDGLCKNGHVLEVMELFPTLEIS 273
             + GL     +   + +   L++S
Sbjct: 656 NMLTGLWSKEELKRAVAMLEKLQMS 680



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 154/343 (44%), Gaps = 29/343 (8%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           L  GF     + DA  L   M      P+V     L+  + R    +L + L+Q+M    
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---CKKT 141
                  + +++ +  LI   C    +      F ++   G++      NTLL   C + 
Sbjct: 110 ------IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVED 163

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           ++ EA  L   M +    P + T+T L+NG C  G++  A+AL D M   G  P   +Y 
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            +++G CK  +   A+N+ R+M            ++ +++P     +  ID LCK+G   
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKM-----------EEVSHIIPNVVIYSAIIDSLCKDGRHS 272

Query: 262 EVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +   LF   E+    +F ++F  NS+I G C  G +  A +L  ++  + +  DVV YN 
Sbjct: 273 DAQNLFT--EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNA 330

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           LI+A  KEG+  +   L   M   G   +  T+++++  F ++
Sbjct: 331 LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  A   F S   + + P N VTF +LI G+C  G + D  +L  +M   G   N  T
Sbjct: 560 SRLDEATQMFDSMGSKSFSP-NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL 110
             TLI G R+ GN+N  L + QEM++      G+Y P+     +++ GL
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMIS-----SGVY-PDTITIRNMLTGL 661


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 171/344 (49%), Gaps = 26/344 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PLN   FN L+  FC EGNI DA ++  ++     +P V + +TLI G  + GN++   +
Sbjct: 237 PLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFR 296

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----T 135
           L  +M           +P+VF Y +LI+ LCK+  +D    LF EM  +G+  N     T
Sbjct: 297 LKHQMEKSRT------RPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTT 350

Query: 136 LLCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+   ++  E + + E    M+ +GL P I  Y  L+NG+C  G +  A  + D M R+G
Sbjct: 351 LIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD  +Y+ LI+G+C+  +VE A+ + +EM  NG       ++L  V      C     
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNG-------IELDRVGFSALVC----- 458

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G+CK G V++       +  +  +     +  ++   CK G  +   +L  ++     V 
Sbjct: 459 GMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVP 518

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            VV YN+L++ L K GQ+K  + LL +M   G   D  T+NTL+
Sbjct: 519 SVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLL 562



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 31/290 (10%)

Query: 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQ 155
           G+L+D + K          +ME+ D G   N  +        CK+  + +A ++ + + +
Sbjct: 209 GNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITK 268

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R L P + ++  L+NGYC VG ++    L   M +    PDVF+YS LIN  CK   ++ 
Sbjct: 269 RSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDG 328

Query: 216 AMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFID 252
           A  +  EM   G                        K+ + +M    + P+    N  ++
Sbjct: 329 AHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVN 388

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CKNG ++    +   +           + +LI G C+ G  E A E+  ++    +  
Sbjct: 389 GFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIEL 448

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           D V ++ L+  + KEG++      L  M   G   D  T+  +M +F +K
Sbjct: 449 DRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKK 498



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 20/224 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +N+L+ GFC  G++  A  +V  M   G RP+  T  TLI G  R G++   L++ +E
Sbjct: 381 VLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKE 440

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL------- 136
           M     D  GI    V  + +L+ G+CK+ R++D  + L  EM   GI  + +       
Sbjct: 441 M-----DQNGIELDRV-GFSALVCGMCKEGRVIDAERAL-REMLRAGIKPDDVTYTMMMD 493

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             CKK       +LL+ M   G  P + TY  LLNG C +G++  A  L D+M   G +P
Sbjct: 494 AFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVP 553

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREM----ILNGFKKIFNEM 235
           D  +Y+ L+ G+ ++ N  +      E+     L  +K I NE+
Sbjct: 554 DDITYNTLLEGHHRHANSSKRYIQKPEIGIVADLASYKSIVNEL 597


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 176/343 (51%), Gaps = 28/343 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L  V+ N L+ G C EG I +A + + +   F C P+  T + L+ GL RTG++   L  
Sbjct: 267 LTSVSVNVLVNGLCKEGRIEEALRFIYEEEGF-C-PDQVTFNALVNGLCRTGHIKQGL-- 322

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EM++ M + G  ++ +V+ Y SLI GLCK   +D+  ++   M  +    NT+     
Sbjct: 323 --EMMDFMLEKG--FELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTL 378

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+  +  A  L  ++  +G+ P + T+  L+ G CL     +A+ LF+ M  KG 
Sbjct: 379 IGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGC 438

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD F+YS+LI   C    ++EA+ + +EM L+G  +        NVV      N  IDG
Sbjct: 439 DPDEFTYSILIESLCSERRLKEALMLLKEMELSGCAR--------NVV----VYNTLIDG 486

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCKN  V +  ++F  +E+         +N+LI G CK    E A++L +++  + L  D
Sbjct: 487 LCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPD 546

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              Y  ++    ++G IK+   ++ +M  NGC  D+ T+ TL+
Sbjct: 547 KFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLI 589



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 162/339 (47%), Gaps = 26/339 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+  T+NSLI G C  G I +A +++  M +  C PN  T +TLI  L +  ++    +L
Sbjct: 335 LDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATEL 394

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            + + +      G+  P+V  + SLI GLC     +   +LF EMK+KG + +       
Sbjct: 395 ARVLTSK-----GVL-PDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSIL 448

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC + +L EA  LL+ M   G    +  Y  L++G C   +V  A  +FD M   G 
Sbjct: 449 IESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGV 508

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
                +Y+ LING CK+  VEEA  +  +MI+ G K            P+ FT    +  
Sbjct: 509 SRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLK------------PDKFTYTTMLKY 556

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C+ G +    ++   + ++ CE  +  + +LI G CK G  ++AS+L   +  K +V  
Sbjct: 557 FCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLT 616

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             AYN +I AL K  + K+   L   M E G   DV T+
Sbjct: 617 PQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITY 655



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 162/342 (47%), Gaps = 27/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI   C E ++  A++L + + + G  P+V T ++LI GL  T N  + ++L 
Sbjct: 371 NTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELF 430

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM     D      P+ F Y  LI+ LC +R + +   L  EM+  G   N +      
Sbjct: 431 EEMKEKGCD------PDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLI 484

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ +A  + + M   G++    TY  L+NG C   +V  A  L D M  +G  
Sbjct: 485 DGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLK 544

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD F+Y+ ++  +C+  +++ A ++ + M LNG          C   P+  T    I GL
Sbjct: 545 PDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNG----------CE--PDIVTYGTLIGGL 592

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G V    +L  ++++    L  + +N +I+  CK    + A  LF ++  K    DV
Sbjct: 593 CKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDV 652

Query: 315 VAYNILIHAL-GKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + Y I+   L    G I++     + M E G   +  +F  L
Sbjct: 653 ITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFL 694



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 168/377 (44%), Gaps = 47/377 (12%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +  TFN LI+  C    +R A  +++ M  +G RP+  T  TL+ G     ++   L+
Sbjct: 196 PPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALR 255

Query: 81  LHQEMV---------------NGMGDFGGI-------YKPNVFC-----YGSLIDGLCKD 113
           + + MV               NG+   G I       Y+   FC     + +L++GLC+ 
Sbjct: 256 IKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEEEGFCPDQVTFNALVNGLCRT 315

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             + Q  ++   M +KG   +          LCK  ++ EA  +L  M+ R   P   TY
Sbjct: 316 GHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTY 375

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L+   C    V  A  L   +  KG +PDV +++ LI G C   N E AM        
Sbjct: 376 NTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAM-------- 427

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
               ++F EMK     P+ FT +I I+ LC    + E + L   +E+S C   V ++N+L
Sbjct: 428 ----ELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTL 483

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G CK      A ++F+++    +    V YN LI+ L K  ++++   L+  M   G 
Sbjct: 484 IDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGL 543

Query: 346 ALDVDTFNTLMISFLQK 362
             D  T+ T++  F Q+
Sbjct: 544 KPDKFTYTTMLKYFCQQ 560



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 33/237 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N+LI G C    + +A+QL+ +M   G +P+  T  T++    + G++     + 
Sbjct: 511 SSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIV 570

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
           Q M +NG        +P++  YG+LI GLCK   VD    L   ++ KG+          
Sbjct: 571 QNMTLNGC-------EPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPV 623

Query: 136 --LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC-LVGKVNVAIALFDSMARKG 192
              LCK+ +  EA RL   MM++G  P + TY  +  G C   G +  A+     M  KG
Sbjct: 624 IQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKG 683

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAM-------------NVSREMILNGFKKI--FNE 234
            +P+  S+  L  G C + ++E+ +             + S   I+ GF KI  FN+
Sbjct: 684 ILPEFPSFGFLAEGLC-SLSMEDTLIQLINMVMEKGRFSQSETSIIRGFLKIQKFND 739



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 4/170 (2%)

Query: 197 VFSYSVLINGYCKNFNV--EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           +F ++     Y  + +V  E    ++R    +    +  +M    +  +  T  IF++  
Sbjct: 78  LFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDESTFLIFLETY 137

Query: 255 CKNGHV-LEVMELFPTLEIS-NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
             + H+  E+  LF  +E     +     +N  +    K    ++   L +K+    +  
Sbjct: 138 ATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPP 197

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           DV  +NILI AL K  Q++    +L  M   G   D  TF TLM  F+++
Sbjct: 198 DVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEE 247


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 196/411 (47%), Gaps = 63/411 (15%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++L A+ +FG          N V +N+++  FC EG   D+ ++V+KM   G  P++ T 
Sbjct: 203 ELLNAMESFGVLP-------NKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTF 255

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           ++ I+ L + G +    ++  +M   + ++ G+ +PN   Y  ++ G CK  L++  K L
Sbjct: 256 NSRISALCKEGKVLDASRIFSDME--LDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTL 313

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F  +++    A+          L +  K +EA  +L+ M  +G+ P I++Y  L++G C 
Sbjct: 314 FESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCK 373

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG------- 227
           +G ++ A  +   M R G  PD  +Y  L++GYC    V+ A ++ +EM+ N        
Sbjct: 374 LGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYT 433

Query: 228 ----------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                            +++  +M       +T TCNI +DGLC +G + + +E+   + 
Sbjct: 434 CNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMR 493

Query: 272 I-----------------------SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           +                       +NC   +  +++L+ G CK G F  A  LF ++  +
Sbjct: 494 VHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGE 553

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            L  D VAYNI IH   K+G+I     +L  ME+ GC   ++T+N+L++  
Sbjct: 554 KLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGL 604



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 163/343 (47%), Gaps = 30/343 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI+  C    +  A +L  +M   GC+PN  T   L+ G  + G  +  L    E+
Sbjct: 149 TFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGL----EL 204

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
           +N M  FG +  PN   Y +++   C++   D ++ +  +M+++G+  +        + L
Sbjct: 205 LNAMESFGVL--PNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISAL 262

Query: 138 CKKTKLVEANRL---LELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           CK+ K+++A+R+   +EL    GL  P   TY  +L G+C VG +  A  LF+S+     
Sbjct: 263 CKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +  + SY++ + G  ++    EA  V ++M   G            + P  ++ NI +DG
Sbjct: 323 LASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKG------------IGPSIYSYNILMDG 370

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G + +   +   ++ +        +  L+ G C  G  + A  L  ++   N + +
Sbjct: 371 LCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPN 430

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               NIL+H+L K G+I +   LL  M E G  LD  T N ++
Sbjct: 431 AYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIV 473



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 158/368 (42%), Gaps = 34/368 (9%)

Query: 10  AFGSF-IRRCYRPLNDVT---FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           AF  F + R   P N  +   +N L++    E  +   S L K M   G  P   T + L
Sbjct: 94  AFPQFQLVRSRFPENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLL 153

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I  L  +  ++   +L  EM           KPN F +G L+ G CK  L D+  +L   
Sbjct: 154 IRALCDSSCVDAARELFDEMPEKG------CKPNEFTFGILVRGYCKAGLTDKGLELLNA 207

Query: 126 MKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M+  G+  N ++        C++ +  ++ +++E M + GL P I T+   ++  C  GK
Sbjct: 208 MESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGK 267

Query: 178 VNVAIALFDSMARKGFM----PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
           V  A  +F  M    ++    P+  +Y++++ G+CK   +E+A            K +F 
Sbjct: 268 VLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDA------------KTLFE 315

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            ++  + +    + NI++ GL ++G  +E   +   +        +  +N L+ G CK G
Sbjct: 316 SIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLG 375

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           +   A  +   +    +  D V Y  L+H     G++     LL  M  N C  +  T N
Sbjct: 376 MLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCN 435

Query: 354 TLMISFLQ 361
            L+ S  +
Sbjct: 436 ILLHSLWK 443



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 142/352 (40%), Gaps = 50/352 (14%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-----------------------CRPN 58
           L+ VT N ++ G C  G +  A ++VK M   G                       C P+
Sbjct: 464 LDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPD 523

Query: 59  VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ 118
           + T  TL+ GL + G       L  EM+      G   +P+   Y   I   CK   +  
Sbjct: 524 LITYSTLLNGLCKAGRFAEAKNLFAEMM------GEKLQPDSVAYNIFIHHFCKQGKISS 577

Query: 119 TKDLFMEMKDKGINA-----NTLLCK---KTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
              +  +M+ KG +      N+L+     K ++ E + L++ M ++G++P I TY   + 
Sbjct: 578 AFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQ 637

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
             C   KV  A  L D M +K   P+VFS+  LI  +CK  + + A  V    +      
Sbjct: 638 YLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAV------ 691

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
                 +C      ++  +  + L   G +L+  EL   +     EL   ++  L+   C
Sbjct: 692 -----SICGQKEGLYS--LMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLC 744

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           K    E+AS + +K+  +    D  A   +I  LGK G  K+ N     M E
Sbjct: 745 KKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKEANSFADKMME 796



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P V+ Y++L+    K   VE    + ++M+L            C + P+T+T N+ I  L
Sbjct: 110 PSVYLYNLLLESCIKERRVEFVSWLYKDMVL------------CGIAPQTYTFNLLIRAL 157

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C +  V    ELF  +    C+     F  L+RG CK G+ +   EL N +    ++ + 
Sbjct: 158 CDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNK 217

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           V YN ++ +  +EG+      ++  M E G   D+ TFN+  IS L KE
Sbjct: 218 VIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNS-RISALCKE 265


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 170/340 (50%), Gaps = 28/340 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ +++        I+DA  L++K+   GC P + T + L+ GL + G +   + L +++
Sbjct: 167 TYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 226

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           V NG         P+V  Y SLIDGL K++   +   LF EM  +G+  +T+        
Sbjct: 227 VDNGC-------TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRG 279

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L +  K+ +A+ + + M  +G  P + T + +++G C  G++  A+ +F SM  +G  P+
Sbjct: 280 LLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPN 339

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
              YS LI+G CK       M+ + EM+         +MK     P+T T NI IDGLCK
Sbjct: 340 EVVYSALIHGLCK----ARKMDCALEMLA--------QMKKAFCTPDTITYNILIDGLCK 387

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V      F  +  + C+  V  +N L+ G CK G  + A  +F+ +S  +   +VV 
Sbjct: 388 SGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVT 447

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y  LI  L K  Q+ K +     M+E GC  D   +++L+
Sbjct: 448 YGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLV 487



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 155/330 (46%), Gaps = 26/330 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            T+N+L+ G C  G + +A  L++K+   GC P+V T  +LI GL +        KL +E
Sbjct: 201 ATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 260

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M        G+    V CY +LI GL +   + Q   ++  M  +G     +  +T+   
Sbjct: 261 MA-----LRGLVLDTV-CYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDG 314

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  ++  A R+ + M  RGL P    Y+ L++G C   K++ A+ +   M +    PD
Sbjct: 315 LCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 374

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y++LI+G CK+ +VE A            +  F+EM      P+ +T NI + G CK
Sbjct: 375 TITYNILIDGLCKSGDVEAA------------RAFFDEMLEAGCKPDVYTYNILVSGFCK 422

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G+      +F  +  S+C   V  + +LI G CK      AS  F  +  +    D   
Sbjct: 423 AGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFV 482

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCA 346
           Y+ L+  L K G+++    L   ME +G A
Sbjct: 483 YSSLVDGLCKSGKLEGGCMLFDEMERSGVA 512



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 146/318 (45%), Gaps = 30/318 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ V + +LI+G    G I  AS + K M + GC P+V T  T+I GL + G +   +++
Sbjct: 268 LDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRI 327

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            + M   G+        PN   Y +LI GLCK R +D   ++  +MK      +T+    
Sbjct: 328 FKSMEARGLA-------PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 380

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK   +  A    + M++ G  P ++TY  L++G+C  G  + A  +FD M+   
Sbjct: 381 LIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSH 440

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+V +Y  LI+G CK   + +A               F  MK     P++F  +  +D
Sbjct: 441 CSPNVVTYGTLISGLCKRRQLTKA------------SLYFQHMKERGCPPDSFVYSSLVD 488

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK+G +     LF  +E S      +    LI   CK    + A  LFN +  K  + 
Sbjct: 489 GLCKSGKLEGGCMLFDEMERSGVA-NSQTRTRLIFHLCKANRVDEAVSLFNAIR-KEGMP 546

Query: 313 DVVAYNILIHALGKEGQI 330
              AYN +I  L K  ++
Sbjct: 547 HPYAYNSIISTLIKSAKV 564



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 155/365 (42%), Gaps = 36/365 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T N+L+  F      R+A  L+K        P+V T + LITG            + +EM
Sbjct: 61  TGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREM 120

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG--INANT------LL 137
                D+G    P++  +  ++ GLCK   V    D F      G  I+ +T       L
Sbjct: 121 EE---DYG--VAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWL 175

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K  K+ +A  L+E +   G  P I TY  LLNG C +G++  AI L   +   G  PDV
Sbjct: 176 AKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDV 235

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNE 234
            +Y+ LI+G  K     EA  + +EM L G                          ++  
Sbjct: 236 VTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKT 295

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M     VP+  T +  IDGLCK G +   + +F ++E         ++++LI G CK   
Sbjct: 296 MTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 355

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A E+  ++       D + YNILI  L K G ++        M E GC  DV T+N 
Sbjct: 356 MDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNI 415

Query: 355 LMISF 359
           L+  F
Sbjct: 416 LVSGF 420



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 149/328 (45%), Gaps = 27/328 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ SLI G   E    +A +L K+MA  G   +      LI GL + G +     +++ 
Sbjct: 236 VTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKT 295

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M +     G +  P+V    ++IDGLCK   +     +F  M+ +G+  N +        
Sbjct: 296 MTSQ----GCV--PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 349

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+  A  +L  M +    P   TY  L++G C  G V  A A FD M   G  PD
Sbjct: 350 LCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPD 409

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V++Y++L++G+CK  N + A  V            F++M   +  P   T    I GLCK
Sbjct: 410 VYTYNILVSGFCKAGNTDAACGV------------FDDMSSSHCSPNVVTYGTLISGLCK 457

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + +    F  ++   C     +++SL+ G CK G  E    LF+++  ++ VA+   
Sbjct: 458 RRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEME-RSGVANSQT 516

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
              LI  L K  ++ +   L  ++ + G
Sbjct: 517 RTRLIFHLCKANRVDEAVSLFNAIRKEG 544



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 12/207 (5%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G    + T   LL+ +    +   A  L  +     F+PDV +++VLI GYC     EEA
Sbjct: 54  GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEA 113

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
             V REM  +             V P   T N+ + GLCK+G VL  M+ F T   + C 
Sbjct: 114 FAVIREMEED-----------YGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCT 162

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
           + +  + +++    K    + A  L  K++       +  YN L++ L K G++++   L
Sbjct: 163 IDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDL 222

Query: 337 LLSMEENGCALDVDTFNTLMISFLQKE 363
           L  + +NGC  DV T+ +L I  L KE
Sbjct: 223 LRKIVDNGCTPDVVTYTSL-IDGLGKE 248



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 13/218 (5%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK-GFMPDVFSYSVL 203
           EA  LL+  +     P + T+  L+ GYCL  +   A A+   M    G  P + +++++
Sbjct: 77  EAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLV 136

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           ++G CK+  V  AM+       NG          C +   T+T    +D L KN  + + 
Sbjct: 137 LHGLCKSGKVLAAMDHFETTTTNG----------CTIDIHTYTA--IVDWLAKNKKIQDA 184

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           + L   +  + C   +  +N+L+ G CK G  E A +L  K+       DVV Y  LI  
Sbjct: 185 VALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG 244

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           LGKE +  +   L   M   G  LD   +  L+   LQ
Sbjct: 245 LGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQ 282


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 179/368 (48%), Gaps = 37/368 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LIK +   G +  A  +  +M   G +P+V T  T+I  L R G M+  +    E 
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAM----EK 451

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            N M D G    P+ + Y  LI G C    + + K+L  E+ + G++ + +        L
Sbjct: 452 FNQMIDQG--VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNL 509

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++++A  + +L +  GL+P    Y+ L++GYCLVGK+  A+ +FD+M   G  P+V
Sbjct: 510 CKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 569

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI-----------------------FNE 234
             Y  L+NGYCK   ++E +++ REM+  G K                         F+E
Sbjct: 570 VVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHE 629

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    +  +  T NI + GL KN    E + LF  L   N ++ +   N++I G  +   
Sbjct: 630 MTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRR 689

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A +LF  +S   LV  VV Y+I+I  L KEG +++   +  SM+  GC  +    N 
Sbjct: 690 VEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNH 749

Query: 355 LMISFLQK 362
           ++   L+K
Sbjct: 750 VVRELLKK 757



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 172/382 (45%), Gaps = 37/382 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTL 65
           AL  FG  +R   R +N +  N L++GFC      +A   L+ +    GC P+V +   L
Sbjct: 130 ALAFFGQLLRTGLR-VNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSIL 188

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L   G       L + M  G    G +  PNV  Y ++IDG  K+  V++  DLF E
Sbjct: 189 LKSLCDQGKSGQADDLLRMMAEG----GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKE 244

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M  +GI  + +        LCK   + +A   L  M+ + + P  +TY  L+ GY   G+
Sbjct: 245 MVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQ 304

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREM 223
              A+ +F  M R   +PDV + S+L+   CK   ++EA +V              S  +
Sbjct: 305 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 364

Query: 224 ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +LNG+           +F+ M    + P+ +T N+ I      G + + M +F  +    
Sbjct: 365 MLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHG 424

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            +  V  + ++I   C+ G  + A E FN++  + +  D  AYN LI      G + K  
Sbjct: 425 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 484

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L+  +  NG  LD+  F++++
Sbjct: 485 ELISEIMNNGMHLDIVFFSSII 506



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 163/365 (44%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +N++I GF  EG++  A  L K+M   G  P++ T ++++  L +   M+      
Sbjct: 218 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 277

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MVN          PN + Y +LI G        +   +F EM+   I  + +      
Sbjct: 278 RQMVNKR------VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 331

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  K+ EA  + + M  +G NP +F+Y  +LNGY   G +     LFD M   G  
Sbjct: 332 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIA 391

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PD ++++VLI  Y     +++AM +  EM  +G K                       + 
Sbjct: 392 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 451

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           FN+M    V P+ +  N  I G C +G +L+  EL   +  +   L +  F+S+I   CK
Sbjct: 452 FNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 511

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A  +F+      L  D V Y++L+      G+++K   +  +M   G   +V  
Sbjct: 512 LGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVV 571

Query: 352 FNTLM 356
           + TL+
Sbjct: 572 YCTLV 576



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 153/362 (42%), Gaps = 38/362 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A+  F   I +   P +   +N LI+GFC  G++  A +L+ ++   G   ++   
Sbjct: 444 KMDDAMEKFNQMIDQGVAP-DKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFF 502

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            ++I  L + G +     +    VN      G++ P+   Y  L+DG C    +++   +
Sbjct: 503 SSIINNLCKLGRVMDAQNIFDLTVNV-----GLH-PDAVVYSMLMDGYCLVGKMEKALRV 556

Query: 123 FMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F  M   GI  N ++        CK  ++ E   L   M+QRG+ P    Y+ +++G   
Sbjct: 557 FDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQ 616

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN---------FNVEEAMNVSREMI- 224
            G+   A   F  M   G   D+ +Y++++ G  KN         F    AMNV   +I 
Sbjct: 617 AGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIIT 676

Query: 225 ----LNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
               ++G          K +F  +    +VP   T +I I  L K G V E  ++F +++
Sbjct: 677 LNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQ 736

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            + CE    + N ++R   K      A    +K+  +N   + +   +L+     +G  +
Sbjct: 737 NAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKGTCR 796

Query: 332 KE 333
           + 
Sbjct: 797 EH 798



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 125/272 (45%), Gaps = 23/272 (8%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANTL--------LCKKTKLVEANRL 149
           N+     L++G C+ +  D+  D+ +    + G   +          LC + K  +A+ L
Sbjct: 145 NIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 204

Query: 150 LELMMQRGL--NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           L +M + G   +P +  Y  +++G+   G VN A  LF  M ++G  PD+ +Y+ +++  
Sbjct: 205 LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHAL 264

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK   +++A    R+M+               V+P  +T N  I G    G   E + +F
Sbjct: 265 CKARAMDKAEAFLRQMVNK------------RVLPNNWTYNNLIYGYSSTGQWKEAVRVF 312

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +   +    V   + L+   CK+G  + A ++F+ ++ K    DV +YNI+++    +
Sbjct: 313 KEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           G +     L   M  +G A D  TFN L+ ++
Sbjct: 373 GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 404



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 128/281 (45%), Gaps = 27/281 (9%)

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEA 146
           +  P    Y  L+D   +    +     F ++   G+  N ++        C+  +  EA
Sbjct: 106 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEA 165

Query: 147 -NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM--PDVFSYSVL 203
            + LL    + G  P +F+Y+ LL   C  GK   A  L   MA  G +  P+V +Y+ +
Sbjct: 166 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTV 225

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I+G+ K  +V +A ++ +EM+  G            + P+  T N  +  LCK    ++ 
Sbjct: 226 IDGFFKEGDVNKACDLFKEMVQRG------------IPPDLVTYNSVVHALCK-ARAMDK 272

Query: 264 MELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
            E F   ++ N  +      +N+LI G    G ++ A  +F ++   +++ DVV  ++L+
Sbjct: 273 AEAF-LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 331

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +L K G+IK+   +  +M   G   DV ++N ++  +  K
Sbjct: 332 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 13/206 (6%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R L+P   TY  L++      +  +A+A F  + R G   ++   + L+ G+C+    +E
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 164

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN- 274
           A+++           + +       VP+ F+ +I +  LC  G   +  +L   +     
Sbjct: 165 ALDI-----------LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA 213

Query: 275 -CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            C   V  +N++I G  K G    A +LF ++  + +  D+V YN ++HAL K   + K 
Sbjct: 214 VCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKA 273

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
              L  M       +  T+N L+  +
Sbjct: 274 EAFLRQMVNKRVLPNNWTYNNLIYGY 299


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 167/356 (46%), Gaps = 28/356 (7%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +RR    +N+VT+N +I G C  G + +A    ++M  +G  P+  T   L+ GL + G 
Sbjct: 271 MRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGR 330

Query: 75  MNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
           +     L  EM  +G+       KPNV  Y +L+DG  K+    +  D+  EM   G+  
Sbjct: 331 LKEAKALLDEMSCSGL-------KPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQP 383

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           N +        LCK  +L  A++LL  M++ G  P  FTY PL+ G+      + A  L 
Sbjct: 384 NKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELL 443

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           + M   G +P+ ++Y ++ING C+N   +EA N+  EMI  G K            P  F
Sbjct: 444 NEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLK------------PNAF 491

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
                I G  K GH+    E    +  +N    +  +NSLI+G    G  E A E + ++
Sbjct: 492 MYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQV 551

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             + LV D   Y+ LIH   K   ++K + LL  M  +G   + DT+  L+  + +
Sbjct: 552 QKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFK 607



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 164/401 (40%), Gaps = 72/401 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
              + L+  +   G++R A+Q+V  M   G  P    C+ L+  L R   M L  KL   
Sbjct: 176 AVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKL--- 232

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
              G  +  GI  P+V+ Y + ++  CK R  D  K +F EM+ +    N +        
Sbjct: 233 --KGFMEGAGI-PPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISG 289

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+   + EA    E M+  GL+P  FTY  L+NG C  G++  A AL D M+  G  P+
Sbjct: 290 LCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPN 349

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
           V  Y+ L++G+ K     EA ++  EMI  G +                       K+ N
Sbjct: 350 VVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLN 409

Query: 234 E-----------------------------------MKLCNVVPETFTCNIFIDGLCKNG 258
           E                                   M+   ++P  +T  I I+GLC+NG
Sbjct: 410 EMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNG 469

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              E   L   +     +    ++  LI G  K G   +A E    ++  N++ D+  YN
Sbjct: 470 ESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYN 529

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            LI  L   G+I++       +++ G   D  T++ L+  +
Sbjct: 530 SLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGY 570



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 171/350 (48%), Gaps = 30/350 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++ T++ LI G+C   N+  A QL+++M   G +PN  T   L+ G  ++ +      + 
Sbjct: 559 DEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSIL 618

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
           Q M+ G GD     KP+   YG +I  L +   ++    +  E++  G+  +        
Sbjct: 619 QSML-GSGD-----KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLI 672

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           + LCK   + +A  LL+ M + GL P I  Y  L++G+C  G ++ A  +FDS+  KG +
Sbjct: 673 SGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLL 732

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+ LI+G CKN ++ +A ++ ++M+  G            + P+ F  N+   G 
Sbjct: 733 PNCVTYTALIDGNCKNGDITDAFDLYKDMLDRG------------IAPDAFVYNVLATG- 779

Query: 255 CKNGHVLEVMELFPTLEISN-CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           C +   LE   LF T E+ N     V +F++L+RG CK G  +   +L + +  + +V +
Sbjct: 780 CSDAADLE-QALFLTEEMFNRGYAHVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPN 838

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCAL-DVDTFNTLMISFLQK 362
                 +I   GK G++ + + +   +++   +    D F+ L    + K
Sbjct: 839 AQTVENVITEFGKAGKLCEAHRVFAELQQKKASQSSTDRFSLLFTDMINK 888



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 171/365 (46%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + +++LI+G C  G +  AS+L+ +M   G RP+  T   L+ G  +  + +   +L 
Sbjct: 384 NKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELL 443

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EM N      GI  PN + YG +I+GLC++    +  +L  EM  +G+  N  +     
Sbjct: 444 NEMRNS-----GIL-PNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLI 497

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K+  +  A   LE M +  + P +F Y  L+ G   VG++  A   +  + ++G +
Sbjct: 498 IGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLV 557

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIFNEMKLCNV 240
           PD F+YS LI+GYCK  N+E+A  + ++M              +L G+ K  +  K+ ++
Sbjct: 558 PDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSI 617

Query: 241 V---------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           +         P+     I I  L ++ ++     +   +E +     + I++SLI G CK
Sbjct: 618 LQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCK 677

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               E A  L ++++ + L   +V YN LI    + G I +   +  S+   G   +  T
Sbjct: 678 MADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVT 737

Query: 352 FNTLM 356
           +  L+
Sbjct: 738 YTALI 742



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 117/264 (44%), Gaps = 20/264 (7%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK--TKLVEAN------RLLELMMQRG 157
           L+D   K+  V     + + M D G+      C      L+ A+      +L   M   G
Sbjct: 181 LVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAG 240

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P ++TY+  L  +C     + A  +F+ M R+    +  +Y+V+I+G C++  VEEA 
Sbjct: 241 IPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAF 300

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
               EM+  G              P+ FT    ++GLCK G + E   L   +  S  + 
Sbjct: 301 GFKEEMVDYGLS------------PDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKP 348

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V ++ +L+ G  K G    A ++ N++    +  + + Y+ LI  L K GQ+ + + LL
Sbjct: 349 NVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLL 408

Query: 338 LSMEENGCALDVDTFNTLMISFLQ 361
             M + G   D  T++ LM    Q
Sbjct: 409 NEMIKVGHRPDTFTYHPLMQGHFQ 432



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 12/195 (6%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L++ Y   G V  A  +   M   G  P         NG  K+    +AM +  +  L G
Sbjct: 181 LVDTYKKNGSVRTAAQVVLMMGDLGLAPT----RRCCNGLLKDLLRADAMELVWK--LKG 234

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
           F      M+   + P+ +T + F++  CK        ++F  +   +C +    +N +I 
Sbjct: 235 F------MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMIS 288

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C+ G  E A     ++    L  D   Y  L++ L K G++K+   LL  M  +G   
Sbjct: 289 GLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKP 348

Query: 348 DVDTFNTLMISFLQK 362
           +V  + TL+  F+++
Sbjct: 349 NVVVYATLVDGFMKE 363


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 168/340 (49%), Gaps = 28/340 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ +++        I++A  L++K+   GC P + T + L+ GL + G +   + L +++
Sbjct: 36  TYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 95

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           V NG         P+V  Y SLIDGL K +   +   LF EM  +G+  +T+        
Sbjct: 96  VDNGC-------TPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRG 148

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L +  K+ +A+ + + M  +G  P + T + +++G C  G++  A+ +F SM  +G  P+
Sbjct: 149 LLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPN 208

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
              YS LI+G CK       M+ + EM+         +MK     P+T T NI IDGLCK
Sbjct: 209 EVVYSALIHGLCK----ARKMDCALEMLA--------QMKKAFCTPDTITYNILIDGLCK 256

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V      F  +  + C+  V  +N LI G CK G  + A  +F+ +S      +VV 
Sbjct: 257 SGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVT 316

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y  LI  L K  Q+ K +     M+E GC  D   +++L+
Sbjct: 317 YGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLV 356



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 151/328 (46%), Gaps = 30/328 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ V + +LI+G    G I  AS + K M + GC P+V T  T+I GL + G +   +++
Sbjct: 137 LDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRI 196

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            + M   G+        PN   Y +LI GLCK R +D   ++  +MK      +T+    
Sbjct: 197 FKSMEARGLA-------PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 249

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK   +  A    + M++ G  P ++TY  L++G+C  G  + A  +FD M+   
Sbjct: 250 LIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSR 309

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+V +Y  LI+G CK   + +A               +  MK     P++F  +  +D
Sbjct: 310 CSPNVVTYGTLISGLCKRRQLTKA------------SLYYQHMKERGCPPDSFVYSSLVD 357

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK+G +     LF  +E S      +    LI   CK    + A  LFN +  K  + 
Sbjct: 358 GLCKSGKLEGGCMLFDEMERSGVA-NSQTRTRLIFHLCKANRVDEAVSLFNAIR-KEGMP 415

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSM 340
              AYN +I AL K G++ +   +   M
Sbjct: 416 HPYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 123/285 (43%), Gaps = 31/285 (10%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKG--INANT------LLCKKTKLVEANRLLELMMQRG 157
           LI+GL K  ++ Q   L  E    G  I+ +T       L K  K+ EA  L+E +   G
Sbjct: 5   LINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANG 64

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
             P I TY  LLNG C +G++  AI L   +   G  PDV +Y+ LI+G  K     EA 
Sbjct: 65  CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAY 124

Query: 218 NVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGL 254
            + +EM   G                          ++  M     VP+  T +  IDGL
Sbjct: 125 KLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGL 184

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G +   + +F ++E         ++++LI G CK    + A E+  ++       D 
Sbjct: 185 CKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT 244

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + YNILI  L K G +         M E GC  DV T+N L+  F
Sbjct: 245 ITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGF 289



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 12/193 (6%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           T++ L+NG    G +  A +L       G   D+ +Y+ +++   KN  ++EA+ +  ++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
             NG              P   T N  ++GLCK G + E ++L   +  + C   V  + 
Sbjct: 61  TANG------------CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 108

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           SLI G  K      A +LF +++ + L  D V Y  LI  L + G+I + + +  +M   
Sbjct: 109 SLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQ 168

Query: 344 GCALDVDTFNTLM 356
           GC  DV T +T++
Sbjct: 169 GCVPDVVTLSTMI 181



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           ++S+LING  K   + +A ++++E   NG          C +   T+T    +D L KN 
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNG----------CTIDIHTYT--TIVDWLAKNK 48

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + E + L   +  + C   +  +N+L+ G CK G  E A +L  K+       DVV Y 
Sbjct: 49  KIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 108

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            LI  LGK+ +  +   L   M   G ALD   +  L+   LQ
Sbjct: 109 SLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQ 151


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 186/383 (48%), Gaps = 48/383 (12%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCME-------------GNIRDASQLVKKMATFGCR 56
            F + +++ Y P N +T  +LIKG C++             G  R A QL++++     +
Sbjct: 117 VFANILKKGYDP-NVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQ 175

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           PNV   +T+I  + +   +N    L+ EMV+      GI  P+V  Y +LI G      +
Sbjct: 176 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVS-----EGI-SPDVVTYSALISGFFIVGKL 229

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
               DLF +M  + I  +           CK  K+ E   +  +MM++G+ P + TY  L
Sbjct: 230 KDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSL 289

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           ++GYCLV +VN A ++F++MA+ G  PD  SY+++ING+CK   V+EAMN          
Sbjct: 290 MDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMN---------- 339

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
             +F +M   N++P   T    IDGLCK+G +   ++L   +        +  ++S++  
Sbjct: 340 --LFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDA 397

Query: 289 CCKFG--------IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            CK          + ++  ++F  L  K    DV AY ++I     +G   +   LL  M
Sbjct: 398 LCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKM 457

Query: 341 EENGCALDVDTFNTLMISFLQKE 363
           E+NG   D  T+  +++S  +K+
Sbjct: 458 EDNGRIPDAKTYEIIILSLFKKD 480



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 168/383 (43%), Gaps = 62/383 (16%)

Query: 29  SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
           SL+K  C       A  L ++M   G   N+ T + LI    + G   L+  +   ++  
Sbjct: 69  SLVKINCY----HTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKK 124

Query: 89  MGDFGGIYKPNVF-------------CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
                  Y PNV               YG+LI+GLCK         L   +  K +  N 
Sbjct: 125 G------YDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNV 178

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +        +CK   + EA  L   M+  G++P + TY+ L++G+ +VGK+  AI LF+ 
Sbjct: 179 VMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNK 238

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK------------------ 229
           M  +   PDV+++++L++G+CK+  ++E   V   M+  G K                  
Sbjct: 239 MILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQ 298

Query: 230 -----KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                 IFN M    V P+T + NI I+G CK   V E M LF  +   N    V  + S
Sbjct: 299 VNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTS 358

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN- 343
           LI G CK G    A +L +++  + +  D++ Y+ ++ AL K  Q+ K   LL  +++  
Sbjct: 359 LIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQV 418

Query: 344 -------GCALDVDTFNTLMISF 359
                  G  LDV  +  ++  F
Sbjct: 419 FEDLFVKGYNLDVYAYTVMIQGF 441



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 25/203 (12%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N +I GFC    + +A  L KKM      PNV T  +LI GL ++G ++  LKL    
Sbjct: 320 SYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKL---- 375

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           V+ M D G    P++  Y S++D LCK+  VD+   L  ++KD                 
Sbjct: 376 VDEMHDRG--VPPDIITYSSILDALCKNHQVDKAIALLTKLKD----------------- 416

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
             ++ E +  +G N  ++ YT ++ G+C+ G  N A+AL   M   G +PD  +Y ++I 
Sbjct: 417 --QVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIIL 474

Query: 206 GYCKNFNVEEAMNVSREMILNGF 228
              K    + A  + REMI  G 
Sbjct: 475 SLFKKDENDMAEKLLREMIARGL 497



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 104/254 (40%), Gaps = 55/254 (21%)

Query: 147 NRLLELMMQRGLNPVIF-----------------------------------TYTPLLNG 171
           NRLL    Q+   P IF                                   T   L+N 
Sbjct: 48  NRLLH---QKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINC 104

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           +  +G+  ++ ++F ++ +KG+ P+V + + LI G C        + VS   ++NG  K+
Sbjct: 105 FSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLC--------LKVSYGTLINGLCKV 156

Query: 232 FNEMKLCN---------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                            V P     N  ID +CK   V E  +L+  +        V  +
Sbjct: 157 GQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTY 216

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           ++LI G    G  + A +LFNK+  +N+  DV  +NIL+    K+G++K+   +   M +
Sbjct: 217 SALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMK 276

Query: 343 NGCALDVDTFNTLM 356
            G   +V T+ +LM
Sbjct: 277 QGIKPNVVTYCSLM 290


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 174/375 (46%), Gaps = 40/375 (10%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  AL   G  ++  Y P + VTF SL+ GFC+   I DA  LV  M   G  PNV  
Sbjct: 120 SRLSFALSVLGKMMKLGYEP-SIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVV 178

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
            +TLI GL + G +N+ L+L  EM   G+G        +V  Y +L+ GLC         
Sbjct: 179 YNTLIDGLCKNGELNIALELLNEMEKKGLG-------ADVVTYNTLLTGLCYSGRWSDAA 231

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            +  +M  + IN + +          K+  L EA  L + M+Q  ++P   TY  ++NG 
Sbjct: 232 RMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGL 291

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-- 230
           C+ G++  A   FD MA KG  P+V +Y+ LI+G+CK   V+E M + + M   GF    
Sbjct: 292 CMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADI 351

Query: 231 ---------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                                IF  M    V P+  T  I + GLC NG +   +  F  
Sbjct: 352 FTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDD 411

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +  S   + +  +N +I G CK    E A ELF +L  + +  D   Y I+I  L K G 
Sbjct: 412 MRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGP 471

Query: 330 IKKENYLLLSMEENG 344
            ++ + L+  M+E G
Sbjct: 472 RREADELIRRMKEEG 486



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 142/300 (47%), Gaps = 26/300 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+ G C  G   DA+++++ M      P+V T   LI    + GN++   +L++E
Sbjct: 212 VTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKE 271

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
           M+    D      PN   Y S+I+GLC    +   K  F  M  KG     +  NTL+  
Sbjct: 272 MIQSSVD------PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISG 325

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   + E  +L + M   G N  IFTY  L++GYC VGK+ VA+ +F  M  +   PD
Sbjct: 326 FCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + ++ +L++G C N  +E A+              F++M+           NI I GLCK
Sbjct: 386 IITHCILLHGLCVNGEIESAL------------VKFDDMRESEKYIGIVAYNIMIHGLCK 433

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              V +  ELF  L +   +     +  +I G CK G    A EL  ++  + ++  + A
Sbjct: 434 ADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNA 493



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 162/341 (47%), Gaps = 30/341 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +F  LI  FC    +  A  ++ KM   G  P++ T  +L+ G      +     L   M
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
           V         Y+PNV  Y +LIDGLCK+  ++   +L  EM+ KG+ A     NTLL   
Sbjct: 168 VKSG------YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +  +A R+L  MM+R +NP + T+T L++ +   G ++ A  L+  M +    P+ 
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNN 281

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ +ING C +  + +A            KK F+ M      P   T N  I G CK 
Sbjct: 282 VTYNSIINGLCMHGRLYDA------------KKTFDLMASKGCFPNVVTYNTLISGFCKF 329

Query: 258 GHVLEVMELFPTL--EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
             V E M+LF  +  E  N ++F   +N+LI G C+ G   +A ++F  +  + +  D++
Sbjct: 330 RMVDEGMKLFQRMSCEGFNADIFT--YNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDII 387

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            + IL+H L   G+I+        M E+   + +  +N ++
Sbjct: 388 THCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMI 428



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 141/314 (44%), Gaps = 45/314 (14%)

Query: 48  KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107
           +KM  +G   ++ +   LI    R   ++  L +  +M+  +G     Y+P++  +GSL+
Sbjct: 95  QKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMK-LG-----YEPSIVTFGSLL 148

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
            G C   LV++  D F                         L+ LM++ G  P +  Y  
Sbjct: 149 HGFC---LVNRIGDAF------------------------SLVILMVKSGYEPNVVVYNT 181

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L++G C  G++N+A+ L + M +KG   DV +Y+ L+ G C +    +A  + R+M+   
Sbjct: 182 LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMM--- 238

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
            K+  N        P+  T    ID   K G++ E  EL+  +  S+ +     +NS+I 
Sbjct: 239 -KRSIN--------PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIIN 289

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C  G    A + F+ ++ K    +VV YN LI    K   + +   L   M   G   
Sbjct: 290 GLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNA 349

Query: 348 DVDTFNTLMISFLQ 361
           D+ T+NTL+  + Q
Sbjct: 350 DIFTYNTLIHGYCQ 363



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 12/203 (5%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P I  +T LL     + +    I     M   G   D++S+++LI+ +C+   +  A++V
Sbjct: 69  PSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSV 128

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             +M+  G++            P   T    + G C    + +   L   +  S  E  V
Sbjct: 129 LGKMMKLGYE------------PSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNV 176

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            ++N+LI G CK G   IA EL N++  K L ADVV YN L+  L   G+      +L  
Sbjct: 177 VVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRD 236

Query: 340 MEENGCALDVDTFNTLMISFLQK 362
           M +     DV TF  L+  F+++
Sbjct: 237 MMKRSINPDVVTFTALIDVFVKQ 259


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 174/375 (46%), Gaps = 40/375 (10%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  AL   G  ++  Y P + VTF SL+ GFC+   I DA  LV  M   G  PNV  
Sbjct: 120 SRLSFALSVLGKMMKLGYEP-SIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVV 178

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
            +TLI GL + G +N+ L+L  EM   G+G        +V  Y +L+ GLC         
Sbjct: 179 YNTLIDGLCKNGELNIALELLNEMEKKGLG-------ADVVTYNTLLTGLCYSGRWSDAA 231

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            +  +M  + IN + +          K+  L EA  L + M+Q  ++P   TY  ++NG 
Sbjct: 232 RMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGL 291

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-- 230
           C+ G++  A   FD MA KG  P+V +Y+ LI+G+CK   V+E M + + M   GF    
Sbjct: 292 CMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADI 351

Query: 231 ---------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                                IF  M    V P+  T  I + GLC NG +   +  F  
Sbjct: 352 FTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDD 411

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +  S   + +  +N +I G CK    E A ELF +L  + +  D   Y I+I  L K G 
Sbjct: 412 MRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGP 471

Query: 330 IKKENYLLLSMEENG 344
            ++ + L+  M+E G
Sbjct: 472 RREADELIRRMKEEG 486



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 178/364 (48%), Gaps = 38/364 (10%)

Query: 12   GSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71
            G  ++  +RP + VT  SL+ GFC     ++A  LV  M  FG  PNV   +T+I GL +
Sbjct: 663  GKMMKLGFRP-SIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCK 721

Query: 72   TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
              ++N  L++   M     +  GI + +   Y +LI GL           L  +M  + I
Sbjct: 722  NRDLNNALEVFYCM-----EKKGI-RADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKI 775

Query: 132  NANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
            + N +          K+  L+EA  L + M++R + P +FTY  L+NG+C+ G +  A  
Sbjct: 776  DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKY 835

Query: 184  LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------------- 228
            +FD M  KG  PDV +Y+ LI G+CK+  VE+ M +  EM   G                
Sbjct: 836  MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 895

Query: 229  --------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                    +K+FN M  C V P+  T NI +D LC NG + + + +   L+ S  ++ + 
Sbjct: 896  QAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDII 955

Query: 281  IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
             +N +I+G C+    + A  LF  L+ K +  D +AY  +I  L ++G  ++ + L   M
Sbjct: 956  TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRM 1015

Query: 341  EENG 344
            +E+G
Sbjct: 1016 KEDG 1019



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 142/300 (47%), Gaps = 26/300 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+ G C  G   DA+++++ M      P+V T   LI    + GN++   +L++E
Sbjct: 212 VTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKE 271

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
           M+    D      PN   Y S+I+GLC    +   K  F  M  KG     +  NTL+  
Sbjct: 272 MIQSSVD------PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISG 325

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   + E  +L + M   G N  IFTY  L++GYC VGK+ VA+ +F  M  +   PD
Sbjct: 326 FCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + ++ +L++G C N  +E A+              F++M+           NI I GLCK
Sbjct: 386 IITHCILLHGLCVNGEIESAL------------VKFDDMRESEKYIGIVAYNIMIHGLCK 433

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              V +  ELF  L +   +     +  +I G CK G    A EL  ++  + ++  + A
Sbjct: 434 ADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNA 493



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 158/339 (46%), Gaps = 26/339 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +F  LI  FC    +  A  ++ KM   G  P++ T  +L+ G      +     L   M
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
           V         Y+PNV  Y +LIDGLCK+  ++   +L  EM+ KG+ A     NTLL   
Sbjct: 168 VKSG------YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +  +A R+L  MM+R +NP + T+T L++ +   G ++ A  L+  M +    P+ 
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNN 281

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ +ING C +  + +A            KK F+ M      P   T N  I G CK 
Sbjct: 282 VTYNSIINGLCMHGRLYDA------------KKTFDLMASKGCFPNVVTYNTLISGFCKF 329

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V E M+LF  +        +  +N+LI G C+ G   +A ++F  +  + +  D++ +
Sbjct: 330 RMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITH 389

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            IL+H L   G+I+        M E+   + +  +N ++
Sbjct: 390 CILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMI 428



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 151/331 (45%), Gaps = 45/331 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +F  LI  FC    +  A  L+ KM   G RP++ T  +L+ G  +       + L    
Sbjct: 641 SFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSL---- 696

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           V+ M  FG  + PNV  Y ++I+GLCK+R ++   ++F  M+ KGI A+ +         
Sbjct: 697 VDSMDGFG--FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAV--------- 745

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
                             TY  L++G    G+   A  L   M ++   P+V  ++ LI+
Sbjct: 746 ------------------TYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALID 787

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
            + K  N+ EA N+ +EMI              +VVP  FT N  I+G C +G + +   
Sbjct: 788 TFVKEGNLLEARNLYKEMIRR------------SVVPNVFTYNSLINGFCIHGCLGDAKY 835

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +F  +    C   V  +N+LI G CK    E   +LF +++ + LV D   YN LIH   
Sbjct: 836 MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 895

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + G++     +   M + G + D+ T+N L+
Sbjct: 896 QAGKLNVAQKVFNRMVDCGVSPDIVTYNILL 926



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 18/242 (7%)

Query: 4    VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
            +L A   +   IRR   P N  T+NSLI GFC+ G + DA  +   M + GC P+V T +
Sbjct: 795  LLEARNLYKEMIRRSVVP-NVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYN 853

Query: 64   TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            TLITG  ++  +   +KL  EM      + G+   + F Y +LI G C+   ++  + +F
Sbjct: 854  TLITGFCKSKRVEDGMKLFCEMT-----YQGLVG-DAFTYNTLIHGYCQAGKLNVAQKVF 907

Query: 124  MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
              M D G++ + +        LC   K+ +A  ++E + +  ++  I TY  ++ G C  
Sbjct: 908  NRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRT 967

Query: 176  GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---KKIF 232
             K+  A  LF S+ RKG  PD  +Y  +I+G C+     EA  + R M  +GF   ++I+
Sbjct: 968  DKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 1027

Query: 233  NE 234
            +E
Sbjct: 1028 DE 1029



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 141/314 (44%), Gaps = 45/314 (14%)

Query: 48  KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107
           +KM  +G   ++ +   LI    R   ++  L +  +M+  +G     Y+P++  +GSL+
Sbjct: 95  QKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMK-LG-----YEPSIVTFGSLL 148

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
            G C   LV++  D F                         L+ LM++ G  P +  Y  
Sbjct: 149 HGFC---LVNRIGDAF------------------------SLVILMVKSGYEPNVVVYNT 181

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L++G C  G++N+A+ L + M +KG   DV +Y+ L+ G C +    +A  + R+M+   
Sbjct: 182 LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMM--- 238

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
            K+  N        P+  T    ID   K G++ E  EL+  +  S+ +     +NS+I 
Sbjct: 239 -KRSIN--------PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIIN 289

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C  G    A + F+ ++ K    +VV YN LI    K   + +   L   M   G   
Sbjct: 290 GLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNA 349

Query: 348 DVDTFNTLMISFLQ 361
           D+ T+NTL+  + Q
Sbjct: 350 DIFTYNTLIHGYCQ 363



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 12/211 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           MM+ G  P I T   LLNG+C   +   A++L DSM   GF+P+V  Y+ +ING CKN +
Sbjct: 665 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 724

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           +  A+ V            F  M+   +  +  T N  I GL  +G   +   L   +  
Sbjct: 725 LNNALEV------------FYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVK 772

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              +  V  F +LI    K G    A  L+ ++  +++V +V  YN LI+     G +  
Sbjct: 773 RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD 832

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             Y+   M   GC  DV T+NTL+  F + +
Sbjct: 833 AKYMFDLMVSKGCFPDVVTYNTLITGFCKSK 863



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 12/203 (5%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P I  +T LL     + +    I     M   G   D++S+++LI+ +C+   +  A++V
Sbjct: 69  PSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSV 128

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             +M+  G++            P   T    + G C    + +   L   +  S  E  V
Sbjct: 129 LGKMMKLGYE------------PSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNV 176

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            ++N+LI G CK G   IA EL N++  K L ADVV YN L+  L   G+      +L  
Sbjct: 177 VVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRD 236

Query: 340 MEENGCALDVDTFNTLMISFLQK 362
           M +     DV TF  L+  F+++
Sbjct: 237 MMKRSINPDVVTFTALIDVFVKQ 259



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 143/357 (40%), Gaps = 42/357 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  +I G C  G  R+A +L+++M   G    +   D  +     + N  ++L L +  
Sbjct: 458 TYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLEE-HSSSNKEISLSLREIW 516

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK----- 140
                +   + +     + S + G  +   +         + ++G N  T L +      
Sbjct: 517 ERSKSNPFWMQRLIPIAFSSSVKGFVRRHYL---------LLERGNNPETSLSRSFSGAS 567

Query: 141 ---------------TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
                           K  +A  L   M+Q    P I  +T +L     + K ++ I L+
Sbjct: 568 HHHHYRERLRNELHCIKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLY 627

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             M   G   D++S+++LI+ +C+   +  A+ +  +M+  GF+            P   
Sbjct: 628 HKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFR------------PSIV 675

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T    ++G C+     E + L  +++       V I+N++I G CK      A E+F  +
Sbjct: 676 TLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCM 735

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             K + AD V YN LI  L   G+      LL  M +     +V  F  L+ +F+++
Sbjct: 736 EKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKE 792


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 179/382 (46%), Gaps = 53/382 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +L+ G C EG + +A  L+ +M   G +PN  T  T++ G+ + G+    L L 
Sbjct: 178 NVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 237

Query: 83  QEMVNGMGDFGGIYKPNVFCYG-----SLIDGLCKDRLVDQTKDLFMEMKDKG------I 131
           ++M     +     KPNV  +       +I+G C      + + L  EM ++       +
Sbjct: 238 RKM-----EEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVV 292

Query: 132 NANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
             N L+    K+ K  EA  L + M+ RG+ P   TY+ +++G+C   +++ A  +F  M
Sbjct: 293 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLM 352

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI-----------------------L 225
           A KG  PD+ +++ LI GYC+   V++ + +  EM                        L
Sbjct: 353 ATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDL 412

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN----------- 274
           N  + +  EM    V P   TCN  +DGLC NG + + +E+F  ++ S            
Sbjct: 413 NAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNG 472

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            E  V+ +N LI G    G F  A EL+ ++  + +V D + YN +IH L K+ ++ +  
Sbjct: 473 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEAT 532

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            +  SM     + +V TF TL+
Sbjct: 533 QMFDSMGSKSFSPNVVTFTTLI 554



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 167/377 (44%), Gaps = 49/377 (12%)

Query: 30  LIKGFCMEGNIRDASQLVKKM-ATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
           +I GFC  G   +A QL+++M       P+V T + LI    + G      +L+ EM+  
Sbjct: 261 MINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 320

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKK 140
                GI  P+   Y S+IDG CK   +D  + +F  M  KG     I  NTL+   C+ 
Sbjct: 321 -----GII-PSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRA 374

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            ++ +  +LL  M + GL     TYT L++G+C VG +N A  L   M   G  P+V + 
Sbjct: 375 KRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTC 434

Query: 201 SVLINGYCKNFNVEEA-----------MNVSREMILNGFK-------------------- 229
           + L++G C N  +++A           M++      NG +                    
Sbjct: 435 NTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFL 494

Query: 230 ---KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
              +++ EM    +VP+T T N  I GLCK   + E  ++F ++   +    V  F +LI
Sbjct: 495 EAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 554

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G CK G  +   ELF ++  + +VA+ + Y  LIH   K G I     +   M  +G  
Sbjct: 555 NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVY 614

Query: 347 LDVDTFNTLMISFLQKE 363
            D  T   ++     KE
Sbjct: 615 PDTITIRNMLTGLWSKE 631



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 137/265 (51%), Gaps = 27/265 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+ +LI GFC  G++  A  L+++M + G  PNV TC+TL+ GL   G +   L++ 
Sbjct: 395 NTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMF 454

Query: 83  QEM------VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           + M      ++    F G+ +P+V  Y  LI GL  +    + ++L+ EM  +GI  +T+
Sbjct: 455 KAMQKSKMDIDASHPFNGV-EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 513

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LCK+++L EA ++ + M  +  +P + T+T L+NGYC  G+V+  + LF  M
Sbjct: 514 TYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 573

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            R+G + +  +Y  LI+G+ K  N+            NG   IF EM    V P+T T  
Sbjct: 574 GRRGIVANAITYITLIHGFRKVGNI------------NGALDIFQEMMASGVYPDTITIR 621

Query: 249 IFIDGLCKNGHVLEVMELFPTLEIS 273
             + GL     +   + +   L++S
Sbjct: 622 NMLTGLWSKEELKRAVAMLEDLQMS 646



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 150/361 (41%), Gaps = 69/361 (19%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN-- 87
           L  GF     + DA  L   M      P+V     L+  + R G +++ + LH++M    
Sbjct: 49  LRSGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRR 108

Query: 88  -----------------------GMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTK 120
                                   +  FG I K    P V  + +L+ GLC +  + +  
Sbjct: 109 VPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEAL 168

Query: 121 DLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           DLF +M           CK                    P + T+T L+NG C  G+V  
Sbjct: 169 DLFHQM-----------CK--------------------PNVVTFTTLMNGLCREGRVVE 197

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A+AL D M   G  P+  +Y  +++G CK  +   A+N+ R+M     +++ +      +
Sbjct: 198 AVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKM-----EEVSHIKPNVVI 252

Query: 241 VP-ETFTCNIFIDGLCKNGHVLEVMELFPT-LEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            P E  TC   I+G C +G   E  +L    LE       V  +N+LI    K G F  A
Sbjct: 253 WPLERRTC--MINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEA 310

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            EL++++  + ++   + Y+ +I    K+ ++    ++   M   GC+ D+ TFNTL+  
Sbjct: 311 EELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAG 370

Query: 359 F 359
           +
Sbjct: 371 Y 371



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 29/252 (11%)

Query: 124 MEMKDKGINANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           MEM+    NA +        C  +KL  A      + + G +P + T++ LL+G C+  +
Sbjct: 104 MEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDR 163

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           ++ A+ LF  M +    P+V +++ L+NG C+   V EA+ +   M+ +G +        
Sbjct: 164 ISEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQ-------- 211

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE-ISNCELFVEIF-----NSLIRGCCK 291
               P   T    +DG+CK G  +  + L   +E +S+ +  V I+       +I G C 
Sbjct: 212 ----PNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCS 267

Query: 292 FGIFEIASELFNK-LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
            G +  A +L  + L  K +  DVV YN LI+A  KEG+  +   L   M   G      
Sbjct: 268 SGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTI 327

Query: 351 TFNTLMISFLQK 362
           T+++++  F ++
Sbjct: 328 TYSSMIDGFCKQ 339


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 173/355 (48%), Gaps = 29/355 (8%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           +G  + R   P N VT+ +LI G C +G+   A +L  +M      P V     LI GL 
Sbjct: 181 YGDMVARGASP-NVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLC 239

Query: 71  RTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
               ++    + + M N GM        PN++ Y +++DG CK   V +  +L+ EM   
Sbjct: 240 GESRISEAESMFRTMRNSGM-------LPNLYTYNTMMDGYCKIAHVKKALELYQEMLGD 292

Query: 130 GINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           G+  N +        LCK  ++V A + L  M   G+ P IF Y  L++GYC  G ++ A
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           ++L   + +   +PDVF+YS+LI G C    +EEA  + +EM   GF            +
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF------------L 400

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P   T N  IDG CK G++ + +E+   +     E  +  F++LI G CK G  E A  L
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + ++  K L+ DVVAY  LI    K+G  K+   L   M+E G   +V T + L+
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 163/345 (47%), Gaps = 50/345 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N+++ G+C   +++ A +L ++M   G  PNV T   LI GL +T  M    K  
Sbjct: 262 NLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFL 321

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M +    FG +  PN+F Y  LIDG CK   + +   L  E++   I  +        
Sbjct: 322 IDMAS----FGVV--PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC   ++ EA+ LL+ M ++G  P   TY  L++GYC  G +  AI +   M  KG  
Sbjct: 376 KGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIE 435

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG---------------FK--------KI 231
           P++ ++S LI+GYCK   +E AM +  EM++ G               FK        ++
Sbjct: 436 PNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRL 495

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT-------------LEISNCELF 278
             EM+   + P  FT +  IDGLCK+G + + ++LF               L+ S C   
Sbjct: 496 HKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPN 555

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             ++ +LI+G C  G    AS+ F+ + C  L  DV    ++I  
Sbjct: 556 HVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQG 600



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 156/323 (48%), Gaps = 26/323 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +  LI+G C E  I +A  + + M   G  PN+ T +T++ G  +  ++   L+L+QE
Sbjct: 229 VIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQE 288

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M   +GD  G+  PNV  +G LIDGLCK   +   +   ++M   G+  N  +       
Sbjct: 289 M---LGD--GLL-PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDG 342

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   L EA  L   + +  + P +FTY+ L+ G C V ++  A  L   M +KGF+P+
Sbjct: 343 YCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPN 402

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+GYCK  N+E+A+ V  +M   G +            P   T +  IDG CK
Sbjct: 403 AVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIE------------PNIITFSTLIDGYCK 450

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +   M L+  + I      V  + +LI G  K G  + A  L  ++    L  +V  
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT 510

Query: 317 YNILIHALGKEGQIKKENYLLLS 339
            + LI  L K+G+I     L L+
Sbjct: 511 LSCLIDGLCKDGRISDAIKLFLA 533



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 159/336 (47%), Gaps = 48/336 (14%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F  LI  F   G + +A  +  KM      P +  C+ ++ GL + G  +   K++ +MV
Sbjct: 129 FGVLIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVLDGLVKKGRFDTMWKVYGDMV 185

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
                      PNV  YG+LIDG C+                           +   ++A
Sbjct: 186 ARGAS------PNVVTYGTLIDGCCR---------------------------QGDFLKA 212

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
            RL + M+++ + P +  YT L+ G C   +++ A ++F +M   G +P++++Y+ +++G
Sbjct: 213 FRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDG 272

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           YCK  +V++A+ + +EM+ +G            ++P   T  I IDGLCK   ++   + 
Sbjct: 273 YCKIAHVKKALELYQEMLGDG------------LLPNVVTFGILIDGLCKTDEMVSARKF 320

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +        + ++N LI G CK G    A  L +++    ++ DV  Y+ILI  L  
Sbjct: 321 LIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCG 380

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             ++++ + LL  M++ G   +  T+NTL+  + ++
Sbjct: 381 VDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKE 416



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 136/323 (42%), Gaps = 85/323 (26%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF  LI G C    +  A + +  MA+FG  PN+   + LI G  + GN++  L LH
Sbjct: 297 NVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLH 356

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
            E+            P+VF Y  LI GLC    +++   L  EMK KG     +  NTL+
Sbjct: 357 SEIEKHE------ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLI 410

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+  + +A  +   M ++G+ P I T++ L++GYC  GK+  A+ L+  M  KG +
Sbjct: 411 DGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL 470

Query: 195 PDVFSY-----------------------------------SVLINGYCKNFNVEEAM-- 217
           PDV +Y                                   S LI+G CK+  + +A+  
Sbjct: 471 PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKL 530

Query: 218 -------------------------NVSREMILNGF---------KKIFNEMKLCNVVPE 243
                                    +V    ++ G           K F++M+   + P+
Sbjct: 531 FLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPD 590

Query: 244 TFTCNIFIDGLCKNGHVLEVMEL 266
            FTC + I G  +  H+ +VM L
Sbjct: 591 VFTCIVIIQGHFRAMHLRDVMML 613



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 119/259 (45%), Gaps = 39/259 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI G+C EGN+  A ++  +M   G  PN+ T  TLI G  + G M   + L+
Sbjct: 402 NAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLY 461

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EMV       G+  P+V  Y +LIDG  KD    +   L  EM++ G++ N        
Sbjct: 462 TEMV-----IKGLL-PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515

Query: 137 --LCKKTKLVEANRLLELM------------MQRGL-NPVIFTYTPLLNGYCLVGKVNVA 181
             LCK  ++ +A +L                + R L +P    YT L+ G C  G++  A
Sbjct: 516 DGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKA 575

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
              F  M   G  PDVF+  V+I G+ +  ++ + M +  +++  G            ++
Sbjct: 576 SKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMG------------II 623

Query: 242 PETFTCNIFIDGLCKNGHV 260
           P +    +   G  ++G++
Sbjct: 624 PNSSVYRVLAKGYEESGYL 642



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 20/186 (10%)

Query: 177 KVNVAIALFDSMAR---KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
           +  +  ++F+ ++R     F P+VF   VLI  + +   VEEA+ V  +M          
Sbjct: 105 RSRICCSVFNVLSRLESSKFTPNVFG--VLIIAFSEMGLVEEALWVYYKM---------- 152

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                +V+P    CN+ +DGL K G    + +++  +        V  + +LI GCC+ G
Sbjct: 153 -----DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQG 207

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
            F  A  LF+++  K +   VV Y ILI  L  E +I +   +  +M  +G   ++ T+N
Sbjct: 208 DFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYN 267

Query: 354 TLMISF 359
           T+M  +
Sbjct: 268 TMMDGY 273


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 168/359 (46%), Gaps = 36/359 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   +   + P N  T+N LI+GFC  G +  A  +   M + G  PN +T +TL+
Sbjct: 9   ALRLFKEVLAGLFAP-NAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLL 67

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   G M+  LKL +EM        G + P    +  L+ G     +  +  + F EM
Sbjct: 68  LGLCEIGQMSSALKLFREMQ------AGPFLPTSASHNILLRGFF---MAGRAIEFFKEM 118

Query: 127 KDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K  G+  +        + L    ++ EA+ L   M     +P I TY  L++GYC +G+ 
Sbjct: 119 KASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQT 175

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A +L   + + G+ P+VF+YS++IN YCK   VEEA  V  +MI +            
Sbjct: 176 YEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIES------------ 223

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC-KFGIFEI 297
           N VP   T N  I G CK G + + ++LF  +E   C+  +  +N+LI   C K G    
Sbjct: 224 NCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYT 283

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A +LFNKL    L   +V YN LI    +         LL  M   GC  DV T+N L+
Sbjct: 284 AVDLFNKLEGAGLTPTIVTYNSLIQGFSERANDGLR--LLCHMHAEGCKPDVITYNCLI 340



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 126/280 (45%), Gaps = 26/280 (9%)

Query: 92  FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTL------LCKKTKL 143
             G++ PN   Y  LI G CK   + Q   +F +MK  G+  NA+T+      LC+  ++
Sbjct: 17  LAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQM 76

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
             A +L   M      P   ++  LL G+ + G+   AI  F  M   G  PD+ SY +L
Sbjct: 77  SSALKLFREMQAGPFLPTSASHNILLRGFFMAGR---AIEFFKEMKASGVEPDLESYHIL 133

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           ++    +  + EA              +F+ M  C+  P+  T N+ +DG CK G   E 
Sbjct: 134 LSALSDSGRMAEA------------HALFSAMT-CS--PDIMTYNVLMDGYCKIGQTYEA 178

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             L   +  +  E  V  ++ +I   CK    E A E+F K+   N V + V +N LI  
Sbjct: 179 QSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAG 238

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             K G ++    L   ME+ GC   + T+NTL+ S  +K 
Sbjct: 239 FCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKR 278



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 128/309 (41%), Gaps = 36/309 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N L+ G+C  G   +A  L+K++   G  PNV T   +I    +   +    ++  +
Sbjct: 160 MTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMK 219

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL--- 136
           M+           PN   + +LI G CK  +++    LF EM+  G  A     NTL   
Sbjct: 220 MIESN------CVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDS 273

Query: 137 LCKKTKLV-EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
           LCKK   V  A  L   +   GL P I TY  L+ G+    + N  + L   M  +G  P
Sbjct: 274 LCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFS--ERANDGLRLLCHMHAEGCKP 331

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           DV +Y+ LI+G C    VE+A            +++FN M      P   T N  I GLC
Sbjct: 332 DVITYNCLISGLCSANRVEDA------------QRLFNGMA---CAPNVTTFNFLIRGLC 376

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
               V E   +   +   +    +  FN++I   CK G    A E+   +       +  
Sbjct: 377 AQKKVEEARNILDRMTAPD----MTTFNTIILAFCKAGAMHDAREVMKDMLKHGFYPNTY 432

Query: 316 AYNILIHAL 324
               L H +
Sbjct: 433 TTYALAHGI 441



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 23/235 (9%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +A RL + ++     P   TY  L+ G+C  G+++ A+++F  M   G +P+  + + L+
Sbjct: 8   QALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLL 67

Query: 205 NGYCKNFNVEEAMNVSREM--------------ILNGF------KKIFNEMKLCNVVPET 244
            G C+   +  A+ + REM              +L GF       + F EMK   V P+ 
Sbjct: 68  LGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMKASGVEPDL 127

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            + +I +  L  +G + E   LF  +    C   +  +N L+ G CK G    A  L  +
Sbjct: 128 ESYHILLSALSDSGRMAEAHALFSAM---TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKE 184

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +       +V  Y+I+I+   K  ++++   + + M E+ C  +  TFNTL+  F
Sbjct: 185 ILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGF 239



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 24/215 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL-RRTGNMNLTLKL 81
           N VTFN+LI GFC  G + DA +L  +M   GC+  + T +TLI  L ++ G +   + L
Sbjct: 228 NAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDL 287

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             ++       G    P +  Y SLI G   +R  D  + L   M  +G   + +     
Sbjct: 288 FNKLE------GAGLTPTIVTYNSLIQGF-SERANDGLR-LLCHMHAEGCKPDVITYNCL 339

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC   ++ +A RL   M      P + T+  L+ G C   KV  A  + D M     
Sbjct: 340 ISGLCSANRVEDAQRLFNGM---ACAPNVTTFNFLIRGLCAQKKVEEARNILDRMT---- 392

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
            PD+ +++ +I  +CK   + +A  V ++M+ +GF
Sbjct: 393 APDMTTFNTIILAFCKAGAMHDAREVMKDMLKHGF 427



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 18/183 (9%)

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           K + A+ LF  +    F P+  +Y+VLI G+CK   + +A++V            F++MK
Sbjct: 5   KHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSV------------FSDMK 52

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              ++P   T N  + GLC+ G +   ++LF  ++           N L+RG   F +  
Sbjct: 53  SSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRG---FFMAG 109

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A E F ++    +  D+ +Y+IL+ AL   G++ + + L  +M    C+ D+ T+N LM
Sbjct: 110 RAIEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLM 166

Query: 357 ISF 359
             +
Sbjct: 167 DGY 169


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 164/356 (46%), Gaps = 62/356 (17%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P N +T N+LIKG C++G I  A     K+   G   +  +  TLI GL + G     
Sbjct: 3   YHP-NTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAA 61

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           L L Q +       G + + N   Y ++I G+CKD+ V+   DL+ EM  KGI+ N +  
Sbjct: 62  LDLLQRVD------GKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTY 115

Query: 137 -----------------------------------------LCKKTKLVEANRLLELMMQ 155
                                                     CK  K+ E   +  +MM+
Sbjct: 116 SALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMK 175

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           +G+ P + TY  L++GY LV +VN A ++F++MA+ G  PD+ SY++LING+CK   V++
Sbjct: 176 QGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDK 235

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           AMN            +FNEM   N++P   T N  IDGL K+G +   ++L   +     
Sbjct: 236 AMN------------LFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGV 283

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
              +  +NS+I    K    + A  L  K   + +   +  Y ILI  L K G++K
Sbjct: 284 PPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLK 339



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 15/229 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A+  F   I    +P +  TFN L+ GFC +  +++   +   M   G  P+V T 
Sbjct: 127 KLKDAIDLFNKIILENIKP-DGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTY 185

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           ++L+ G R    +N    +   M  G     G+  P++  Y  LI+G CK + VD+  +L
Sbjct: 186 NSLVDGYRLVKEVNTAKSIFNTMAQG-----GV-NPDIRSYNILINGFCKIKKVDKAMNL 239

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EM  K I  N +        L K  ++  A +L++ M  RG+ P I TY  +++    
Sbjct: 240 FNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFK 299

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
             +V+ AIAL      +G  P +++Y++LI+G CK   +++A N+  ++
Sbjct: 300 THQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 15/232 (6%)

Query: 131 INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           I  NTL   LC K ++ +A    + ++  G +    +Y  L++G C VG+   A+ L   
Sbjct: 8   ITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQR 67

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           +  K    +   Y+ +I G CK+ +V +A ++  EM+  G            + P   T 
Sbjct: 68  VDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKG------------ISPNVVTY 115

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           +  I G    G + + ++LF  + + N +     FN L+ G CK    +    +F  +  
Sbjct: 116 SALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMK 175

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + ++ DVV YN L+       ++     +  +M + G   D+ ++N L+  F
Sbjct: 176 QGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGF 227


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 184/396 (46%), Gaps = 62/396 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  Y P + +T N+ IKGFC++G I  A     K+   G   +  +  TLI
Sbjct: 124 AFSVLAKILKMGYEP-DTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLI 182

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G     L+L + +       G + + +V  Y ++ID +CKD+ V+   DL+ EM
Sbjct: 183 NGLCKVGETRAALELLRRVD------GKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEM 236

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             + I++N +                                            CK+ ++
Sbjct: 237 VSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRV 296

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA   L +MM++G+ P I TY  L++GYCLV +VN+A ++ ++M+ +G    V SY+++
Sbjct: 297 KEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIV 356

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           ING+CK   V++AM            K+F EM    + P   T N  IDGLCK+G +   
Sbjct: 357 INGFCKIKMVDQAM------------KLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYA 404

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           +EL   +     +  +  ++S++   CK  + + A  L  KL  + +  ++  Y ILI  
Sbjct: 405 LELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDG 464

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L K G+++    +   +   G  L V+T+  ++  F
Sbjct: 465 LCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGF 500



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 168/348 (48%), Gaps = 30/348 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+++LI GFC+ G ++DA  L  KM +    P+V T + L+    + G +       
Sbjct: 244 NIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRV------- 296

Query: 83  QEMVNGMGDF--GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           +E  NG+      GI KP++  Y SL+DG C    V+  K +   M  +G+ A       
Sbjct: 297 KEAKNGLAMMMKQGI-KPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNI 355

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                CK   + +A +L + M  + + P + TY  L++G C  G+++ A+ L D M  +G
Sbjct: 356 VINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRG 415

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+ +YS +++  CKN  V++A+             +  ++K   + P  +T  I ID
Sbjct: 416 QQPDIITYSSILDALCKNHLVDKAI------------ALLIKLKDQGIRPNMYTYTILID 463

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK G + +   +F  L +    L V  +  +I+G C  G+F+ A  L +K+   + + 
Sbjct: 464 GLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIP 523

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           D + Y I+I +L  + +  K   LL  M   G       + +  +SF+
Sbjct: 524 DAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFM 571



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 158/337 (46%), Gaps = 53/337 (15%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N +I GFC    +  A +L K+M      PNV T ++LI GL ++G ++  L    E+
Sbjct: 352 SYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYAL----EL 407

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           ++ M D G   +P++  Y S++D LCK+ LVD+   L +++KD+GI  N          L
Sbjct: 408 IDLMHDRGQ--QPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGL 465

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  +L +A  + E ++ +G N  + TYT ++ G+C  G  + A++L   M     +PD 
Sbjct: 466 CKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDA 525

Query: 198 FSYSVLINGYCKNFNVEE---AMNVSREMILNGFKKIFNEMKLCNV----VPETFTCN-- 248
            +Y ++I   C  F+ +E   A  + REMI  G    F E    ++     P  F  N  
Sbjct: 526 ITYEIII---CSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDS 582

Query: 249 -------------------IFIDGLCKNGHVLEVMELFPTLEI-SNCE-------LFVEI 281
                              I+ D +    ++ +     P++ I S C+       L V  
Sbjct: 583 LQCTSSQESGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNT 642

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           +  +I+G C  G+F+ +  L +K+     + D V Y+
Sbjct: 643 YTVMIQGFCSHGLFDESLALLSKMEVNGCIPDAVTYD 679



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 132 NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           + +T       +V+A  L   ++++   P    +  +L         +  ++LF  M  +
Sbjct: 40  STSTTFHNNNDVVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYR 99

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+  ++++LIN +C+   +  A +V  +++  G++            P+T T N FI
Sbjct: 100 GIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYE------------PDTITLNTFI 147

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
            G C  G + + +     L      L    + +LI G CK G    A EL  ++  K + 
Sbjct: 148 KGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQ 207

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            DVV Y+ +I ++ K+  +     L   M     + ++ T++ L+  F
Sbjct: 208 LDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGF 255


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 175/366 (47%), Gaps = 40/366 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATF---GCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           V++N+L+KGFC E    +A +L+  MA      C PNV +   +I G    G ++    L
Sbjct: 166 VSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNL 225

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TLLC- 138
             EM++      GI +PNV  Y ++IDGLCK ++VD+ + +F +M DKG+  +  T  C 
Sbjct: 226 FLEMMDR-----GI-QPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCL 279

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                   K  E  R+LE M   GL P  +TY  LLN  C  G+   A  LFDSM RKG 
Sbjct: 280 IHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGI 339

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
            P+V  Y +LI+GY     + E  ++   M+ NG                          
Sbjct: 340 KPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMH 399

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           IFN+MK   + P+       ID LCK G V + +  F  +        + +FNSL+ G C
Sbjct: 400 IFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLC 459

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
               +E A E + ++  + +  DVV +N ++  L  +GQ+ K   L+  ME  G    V 
Sbjct: 460 TVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVI 519

Query: 351 TFNTLM 356
           ++ TL+
Sbjct: 520 SYTTLI 525



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 181/368 (49%), Gaps = 39/368 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-LTLKLHQEM 85
           FN +   +  +  I +A  +  KM   G  P+V     LI  L + G ++   LK +Q M
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMM 440

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
             G+        PN+F + SL+ GLC     ++ K+ + EM ++GI  + +        L
Sbjct: 441 NEGVA-------PNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNL 493

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C K ++++A RL++LM + G  P + +YT L+ G+CLVG+++ A    D M   G  PD 
Sbjct: 494 CTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDE 553

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF----------------KKIFNEMK--LCN 239
           ++Y+ L++GYC+   +++A  V REM+ NG                  + F+E K    N
Sbjct: 554 WTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLN 613

Query: 240 VVPETFTCNIFI-----DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           ++      NI+I     +GL KN  V E  +LF +L   + +L +  FN +I    K G 
Sbjct: 614 MITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGR 673

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A  LF  +S   LV DV  Y ++   L +EG +++ + L  +ME++G   +    N 
Sbjct: 674 NEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNA 733

Query: 355 LMISFLQK 362
           L+   L +
Sbjct: 734 LVRRLLHR 741



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 154/369 (41%), Gaps = 48/369 (13%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDA---SQLVKKM-------ATFGCRPNVTTCDTLITGL 69
           RP + + FN L+         R +   S+LV  +        T    P+  T   LI   
Sbjct: 45  RPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVTPDPCTYSILIGCF 104

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVFCYGSLIDGLC-KDRLVDQTKDLFM 124
            R G +           +G   FG I    ++ N      L+ GLC   RL +    L  
Sbjct: 105 CRMGRLE----------HGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDILVK 154

Query: 125 EMKDKG-----INANTLL---CKKTKLVEANRLLELMMQ---RGLNPVIFTYTPLLNGYC 173
            M + G     ++ NTLL   C + +  EA  LL +M     R   P + +Y  ++NG+ 
Sbjct: 155 RMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFF 214

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G+V+ A  LF  M  +G  P+V +Y+ +I+G CK   V+ A  V ++MI  G K    
Sbjct: 215 TEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVK---- 270

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+  T N  I G    G   EV+ +   +     +     + SL+   C  G
Sbjct: 271 --------PDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNG 322

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A  LF+ +  K +  +V  Y ILIH    +G + + + LL  M ENG + D   FN
Sbjct: 323 RCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFN 382

Query: 354 TLMISFLQK 362
            +  ++ +K
Sbjct: 383 IIFTAYAKK 391



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 137/317 (43%), Gaps = 29/317 (9%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP + V FN+++   C +G +  A +L+  M   G RP V +  TLI G    G ++   
Sbjct: 480 RP-DVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAA 538

Query: 80  KLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           K    M++ G+       KP+ + Y +L+ G C+   +D    +F EM   GI    +  
Sbjct: 539 KSLDVMLSVGL-------KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTY 591

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 L    +  EA  L   M+  G    I+ Y  +LNG      V+ A  LF S+  
Sbjct: 592 STILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCS 651

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           K F  ++ +++++I    K+   E+AM+            +F  +    +VP+ FT  + 
Sbjct: 652 KDFQLEITTFNIMIGALFKSGRNEDAMH------------LFATISSYGLVPDVFTYCLI 699

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
            + L + G++ E  +LF  +E S       + N+L+R     G    A     KL  KN 
Sbjct: 700 AENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKNF 759

Query: 311 VADVVAYNILIHALGKE 327
             +     +LI  L ++
Sbjct: 760 SLEASTTAMLISLLSRD 776


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 173/355 (48%), Gaps = 29/355 (8%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           +G  + R   P N VT+ +LI G C +G+   A +L  +M      P V     LI GL 
Sbjct: 181 YGDMVARGASP-NVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLC 239

Query: 71  RTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
               ++    + + M N GM        PN++ Y +++DG CK   V +  +L+ EM   
Sbjct: 240 GESRISEAESMFRTMRNSGM-------LPNLYTYNTMMDGYCKIAHVKKALELYQEMLGD 292

Query: 130 GINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           G+  N +        LCK  ++V A + L  M   G+ P IF Y  L++GYC  G ++ A
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           ++L   + +   +PDVF+YS+LI G C    +EEA  + +EM   GF            +
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF------------L 400

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P   T N  IDG CK G++ + +E+   +     E  +  F++LI G CK G  E A  L
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + ++  K L+ DVVAY  LI    K+G  K+   L   M+E G   +V T + L+
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 156/323 (48%), Gaps = 26/323 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +  LI+G C E  I +A  + + M   G  PN+ T +T++ G  +  ++   L+L+QE
Sbjct: 229 VIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQE 288

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M   +GD  G+  PNV  +G LIDGLCK   +   +   ++M   G+  N  +       
Sbjct: 289 M---LGD--GLL-PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDG 342

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   L EA  L   + +  + P +FTY+ L+ G C V ++  A  L   M +KGF+P+
Sbjct: 343 YCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPN 402

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+GYCK  N+E+A+ V  +M   G +            P   T +  IDG CK
Sbjct: 403 AVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIE------------PNIITFSTLIDGYCK 450

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +   M L+  + I      V  + +LI G  K G  + A  L  ++    L  +V  
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT 510

Query: 317 YNILIHALGKEGQIKKENYLLLS 339
            + LI  L K+G+I     L L+
Sbjct: 511 LSCLIDGLCKDGRISDAIKLFLA 533



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 136/276 (49%), Gaps = 37/276 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N+++ G+C   +++ A +L ++M   G  PNV T   LI GL +T  M    K  
Sbjct: 262 NLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKF- 320

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
              +  M  FG +  PN+F Y  LIDG CK   + +   L  E++   I  +        
Sbjct: 321 ---LIDMASFGVV--PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC   ++ EA+ LL+ M ++G  P   TY  L++GYC  G +  AI +   M  KG  
Sbjct: 376 KGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIE 435

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG---------------FK--------KI 231
           P++ ++S LI+GYCK   +E AM +  EM++ G               FK        ++
Sbjct: 436 PNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRL 495

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
             EM+   + P  FT +  IDGLCK+G + + ++LF
Sbjct: 496 HKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 156/330 (47%), Gaps = 48/330 (14%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F  LI  F   G + +A  +  KM      P +  C+ ++ GL + G  +   K++ +MV
Sbjct: 129 FGVLIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVLDGLVKKGRFDTMWKVYGDMV 185

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
                      PNV  YG+LIDG C+                           +   ++A
Sbjct: 186 ARGA------SPNVVTYGTLIDGCCR---------------------------QGDFLKA 212

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
            RL + M+++ + P +  YT L+ G C   +++ A ++F +M   G +P++++Y+ +++G
Sbjct: 213 FRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDG 272

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           YCK  +V++A+ + +EM+ +G            ++P   T  I IDGLCK   ++   + 
Sbjct: 273 YCKIAHVKKALELYQEMLGDG------------LLPNVVTFGILIDGLCKTDEMVSARKF 320

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +        + ++N LI G CK G    A  L +++    ++ DV  Y+ILI  L  
Sbjct: 321 LIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCG 380

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             ++++ + LL  M++ G   +  T+NTL+
Sbjct: 381 VDRMEEADGLLQEMKKKGFLPNAVTYNTLI 410



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 20/183 (10%)

Query: 177 KVNVAIALFDSMAR---KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
           +  +  ++F+ ++R     F P+VF   VLI  + +   VEEA+ V  +M          
Sbjct: 105 RSRICCSVFNVLSRLESSKFTPNVFG--VLIIAFSEMGLVEEALWVYYKM---------- 152

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                +V+P    CN+ +DGL K G    + +++  +        V  + +LI GCC+ G
Sbjct: 153 -----DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQG 207

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
            F  A  LF+++  K +   VV Y ILI  L  E +I +   +  +M  +G   ++ T+N
Sbjct: 208 DFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYN 267

Query: 354 TLM 356
           T+M
Sbjct: 268 TMM 270



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 138/392 (35%), Gaps = 77/392 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI G+C EGN+  A ++  +M   G  PN+ T  TLI G  + G M   + L+
Sbjct: 402 NAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLY 461

Query: 83  QEMV-NGM------------GDF-----------------GGIYKPNVFCYGSLIDGLCK 112
            EMV  G+            G F                  G++ PNVF    LIDGLCK
Sbjct: 462 TEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLH-PNVFTLSCLIDGLCK 520

Query: 113 DRLVDQTKDLFME---MKDKGINANTL------------------------LCKKTKLVE 145
           D  +     LF+        G   N L                        + + TKL  
Sbjct: 521 DGRISDAIKLFLAKTGTDTTGSKTNELDRSLYQMCSLALSLFRGISEPCICVIRVTKLFA 580

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP-DVFSYSVLI 204
            N   +  +   L P     T  L  Y      +  +  F  + RK     D FS    +
Sbjct: 581 TNNQPKAHLHTHLKPPKSNQT--LKRYLQSSNTSKVLLFFRILLRKNPSSIDSFSLMFAL 638

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
                  ++ E   +   +I  GF+            P  F     I      G+V +  
Sbjct: 639 KACTLKSSLVEGKQMHALVINFGFE------------PIIFLQTSLISMYSATGNVADAH 686

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            +F  +   N   +  + ++ +           A +LF ++   ++  D+V   + + A 
Sbjct: 687 NMFDEIPSKNLISWTSVISAYVDNQRP----NKALQLFRQMQMDDVQPDIVTVTVALSAC 742

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              G +    ++   +   G   D+   N+L+
Sbjct: 743 ADLGALDMGEWIHAYIRHRGLDTDLCLNNSLI 774


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 173/344 (50%), Gaps = 26/344 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PLN   FN L+  FC EGNI DA ++  ++     RP V + +TLI G  + GN+++  +
Sbjct: 237 PLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFR 296

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----T 135
           L   M           +P+VF Y +LI+ LCK+  +D    LF EM ++G+  N     T
Sbjct: 297 LKHHMEKSRT------RPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTT 350

Query: 136 LLCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+   ++  + + + E    M+ +GL P I  Y  L+NG+C  G +  A  + D M R+G
Sbjct: 351 LIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD  +Y+ LI+G+C+  +V+ A+ + +EM  NG       ++L  V      C     
Sbjct: 411 LRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNG-------IELDRVGFSALIC----- 458

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G+CK G V++       +  +  +     +  ++   CK G  +   +L  ++     + 
Sbjct: 459 GMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIP 518

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +VV YN+L++ L K GQ+K  + LL +M   G   D  T+NTL+
Sbjct: 519 NVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLL 562



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 29/286 (10%)

Query: 14  FIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71
           F   C R L  NDV F +LI G    G I    +  +KM + G +P++   +TL+ G  +
Sbjct: 333 FYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCK 392

Query: 72  TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
            G+    L   + +V+GM   G   +P+   Y +LIDG C+   VD   ++  EM   GI
Sbjct: 393 NGD----LVAARNIVDGMIRRG--LRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGI 446

Query: 132 NANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
             + +        +CK+ ++++A R L  M++ G+ P   TYT +++ +C  G       
Sbjct: 447 ELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFK 506

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           L   M   G +P+V +Y+VL+NG CK   ++ A     +M+L+    +        VVP+
Sbjct: 507 LLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNA-----DMLLDAMLNV-------GVVPD 554

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEI-SNCELFVEIFNSLIRG 288
             T N  ++G  ++ +  +  +  P + I ++   +  + N L R 
Sbjct: 555 DITYNTLLEGHHRHANASKHYKQKPEIGIVADLASYKSLVNELYRA 600



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 124/290 (42%), Gaps = 31/290 (10%)

Query: 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQ 155
           G+L+D + K          +ME+ D G   N  +        CK+  + +A ++ + + +
Sbjct: 209 GNLLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITK 268

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R L P + ++  L+NGYC VG ++V   L   M +    PDVF+YS LIN  CK   ++ 
Sbjct: 269 RSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDG 328

Query: 216 AMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFID 252
           A  +  EM   G                        K+ + +M    + P+    N  ++
Sbjct: 329 AHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVN 388

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CKNG ++    +   +           + +LI G C+ G  + A E+  ++    +  
Sbjct: 389 GFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIEL 448

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           D V ++ LI  + KEG++      L  M   G   D  T+  +M +F +K
Sbjct: 449 DRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKK 498


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 180/368 (48%), Gaps = 29/368 (7%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GAL +    ++R   P N V +N+++ G C  G + +A  L  +M      PNV T + L
Sbjct: 171 GALESLKKMVKRNLEP-NVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCL 229

Query: 66  ITGL-RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           I GL    G     + L  EMV   G       P+V  +  L++G CK+ L+ + + +  
Sbjct: 230 IQGLCGEVGGWREGVGLFNEMVAEKG-----IVPDVQTFSILVNGFCKEGLLLRAESMVG 284

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLN--PVIFTYTPLLNGYCL 174
            M   G+  N +         C + ++ EA R+ +LM++ G    P + TY  L++G+C 
Sbjct: 285 FMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIHGWCK 344

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           V KVN A++L   M  KG  PDVF+++ LI G+   F V + +           K++F  
Sbjct: 345 VKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGF---FEVGKPLAA---------KELFIT 392

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           MK    VP   TC + +DGL K     E M LF  +E S  +L + I+N ++ G CK G 
Sbjct: 393 MKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGK 452

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A +L + +  K L  D   +NI+I  L +EG +     LL  M+ENGC  +  ++N 
Sbjct: 453 LNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNV 512

Query: 355 LMISFLQK 362
            +   L+K
Sbjct: 513 FVQGLLRK 520



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 20/231 (8%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK      A   L+ M++R L P +  Y  +L+G C  G V  A+ LF  M      P+
Sbjct: 163 LCKIGDTSGALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPN 222

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM-KLCNVVPETFTCNIFID 252
           V +Y+ LI G C                + G+++   +FNEM     +VP+  T +I ++
Sbjct: 223 VVTYNCLIQGLCGE--------------VGGWREGVGLFNEMVAEKGIVPDVQTFSILVN 268

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL--SCKNL 310
           G CK G +L    +   +     EL V  +NSLI G C     E A  +F+ +    +  
Sbjct: 269 GFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVREGEGC 328

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +  VV YN LIH   K  ++ K   LL  M   G   DV T+ +L+  F +
Sbjct: 329 LPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFE 379



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 26/207 (12%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           T   L+N  C + K  +  A+   M + G  P + + + + NG C               
Sbjct: 114 TLNILINCLCRLRKTTLGFAVLGLMTKIGLEPTLVTLNTIANGLC--------------- 158

Query: 224 ILNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           I+NG  KI           +M   N+ P     N  +DGLCK G V E + LF  + + N
Sbjct: 159 IVNGLCKIGDTSGALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVN 218

Query: 275 CELFVEIFNSLIRGCC-KFGIFEIASELFNKLSC-KNLVADVVAYNILIHALGKEGQIKK 332
            E  V  +N LI+G C + G +     LFN++   K +V DV  ++IL++   KEG + +
Sbjct: 219 VEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLR 278

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
              ++  M   G  L+V T+N+L+  +
Sbjct: 279 AESMVGFMIRIGVELNVVTYNSLISGY 305



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 21/188 (11%)

Query: 181 AIALFDSMARKGF-MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
           AI+L  ++   G+ + DV + ++LIN  C+           R+  L GF  +   M    
Sbjct: 95  AISLIKTLHSLGYEIADVCTLNILINCLCR----------LRKTTL-GFA-VLGLMTKIG 142

Query: 240 VVPETFTCNIF------IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           + P   T N        ++GLCK G     +E    +   N E  V ++N+++ G CK G
Sbjct: 143 LEPTLVTLNTIANGLCIVNGLCKIGDTSGALESLKKMVKRNLEPNVVVYNAILDGLCKRG 202

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS--MEENGCALDVDT 351
           +   A  LF ++   N+  +VV YN LI  L  E    +E   L +  + E G   DV T
Sbjct: 203 LVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQT 262

Query: 352 FNTLMISF 359
           F+ L+  F
Sbjct: 263 FSILVNGF 270


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 178/364 (48%), Gaps = 38/364 (10%)

Query: 12  GSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71
           G  ++  +RP + VT  SL+ GFC     ++A  LV  M  FG  PNV   +T+I GL +
Sbjct: 138 GKMMKLGFRP-SIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCK 196

Query: 72  TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
             ++N  L++   M     +  GI + +   Y +LI GL           L  +M  + I
Sbjct: 197 NRDLNNALEVFYCM-----EKKGI-RADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKI 250

Query: 132 NANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
           + N +          K+  L+EA  L + M++R + P +FTY  L+NG+C+ G +  A  
Sbjct: 251 DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKY 310

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------------- 228
           +FD M  KG  PDV +Y+ LI G+CK+  VE+ M +  EM   G                
Sbjct: 311 MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 370

Query: 229 --------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                   +K+FN M  C V P+  T NI +D LC NG + + + +   L+ S  ++ + 
Sbjct: 371 QAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDII 430

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            +N +I+G C+    + A  LF  L+ K +  D +AY  +I  L ++G  ++ + L   M
Sbjct: 431 TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRM 490

Query: 341 EENG 344
           +E+G
Sbjct: 491 KEDG 494



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 151/331 (45%), Gaps = 45/331 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +F  LI  FC    +  A  L+ KM   G RP++ T  +L+ G  +       + L    
Sbjct: 116 SFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSL---- 171

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           V+ M  FG  + PNV  Y ++I+GLCK+R ++   ++F  M+ KGI A+ +         
Sbjct: 172 VDSMDGFG--FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAV--------- 220

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
                             TY  L++G    G+   A  L   M ++   P+V  ++ LI+
Sbjct: 221 ------------------TYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALID 262

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
            + K  N+ EA N+ +EMI              +VVP  FT N  I+G C +G + +   
Sbjct: 263 TFVKEGNLLEARNLYKEMIRR------------SVVPNVFTYNSLINGFCIHGCLGDAKY 310

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +F  +    C   V  +N+LI G CK    E   +LF +++ + LV D   YN LIH   
Sbjct: 311 MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 370

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + G++     +   M + G + D+ T+N L+
Sbjct: 371 QAGKLNVAQKVFNRMVDCGVSPDIVTYNILL 401



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 18/242 (7%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           +L A   +   IRR   P N  T+NSLI GFC+ G + DA  +   M + GC P+V T +
Sbjct: 270 LLEARNLYKEMIRRSVVP-NVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYN 328

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           TLITG  ++  +   +KL  EM      + G+   + F Y +LI G C+   ++  + +F
Sbjct: 329 TLITGFCKSKRVEDGMKLFCEMT-----YQGLVG-DAFTYNTLIHGYCQAGKLNVAQKVF 382

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
             M D G++ + +        LC   K+ +A  ++E + +  ++  I TY  ++ G C  
Sbjct: 383 NRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRT 442

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---KKIF 232
            K+  A  LF S+ RKG  PD  +Y  +I+G C+     EA  + R M  +GF   ++I+
Sbjct: 443 DKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 502

Query: 233 NE 234
           +E
Sbjct: 503 DE 504



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 12/211 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           MM+ G  P I T   LLNG+C   +   A++L DSM   GF+P+V  Y+ +ING CKN +
Sbjct: 140 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 199

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           +  A+ V            F  M+   +  +  T N  I GL  +G   +   L   +  
Sbjct: 200 LNNALEV------------FYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVK 247

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              +  V  F +LI    K G    A  L+ ++  +++V +V  YN LI+     G +  
Sbjct: 248 RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD 307

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             Y+   M   GC  DV T+NTL+  F + +
Sbjct: 308 AKYMFDLMVSKGCFPDVVTYNTLITGFCKSK 338



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 14/229 (6%)

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           N L C   K  +A  L   M+Q    P I  +T +L     + K ++ I L+  M   G 
Sbjct: 53  NELHC--IKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGI 110

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             D++S+++LI+ +C+   +  A+ +  +M+  GF+            P   T    ++G
Sbjct: 111 SHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFR------------PSIVTLGSLLNG 158

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C+     E + L  +++       V I+N++I G CK      A E+F  +  K + AD
Sbjct: 159 FCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRAD 218

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            V YN LI  L   G+      LL  M +     +V  F  L+ +F+++
Sbjct: 219 AVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKE 267


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 173/355 (48%), Gaps = 29/355 (8%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           +G  + R   P N VT+ +LI G C +G+   A +L  +M      P V     LI GL 
Sbjct: 181 YGDMVARGASP-NVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLC 239

Query: 71  RTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
               ++    + + M N GM        PN++ Y +++DG CK   V +  +L+ EM   
Sbjct: 240 GESRISEAESMFRTMRNSGM-------LPNLYTYNTMMDGYCKIAHVKKALELYXEMLGD 292

Query: 130 GINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           G+  N +        LCK  ++V A + L  M   G+ P IF Y  L++GYC  G ++ A
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           ++L   + +   +PDVF+YS+LI G C    +EEA  + +EM   GF            +
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF------------L 400

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P   T N  IDG CK G++ + +E+   +     E  +  F++LI G CK G  E A  L
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + ++  K L+ DVVAY  LI    K+G  K+   L   M+E G   +V T + L+
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 161/345 (46%), Gaps = 50/345 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N+++ G+C   +++ A +L  +M   G  PNV T   LI GL +T  M    K  
Sbjct: 262 NLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKF- 320

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
              +  M  FG +  PN+F Y  LIDG CK   + +   L  E++   I  +        
Sbjct: 321 ---LIDMASFGVV--PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC   ++ EA+ LL+ M ++G  P   TY  L++GYC  G +  AI +   M  KG  
Sbjct: 376 KGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIE 435

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG---------------FK--------KI 231
           P++ ++S LI+GYCK   +E AM +  EM++ G               FK        ++
Sbjct: 436 PNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRL 495

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT-------------LEISNCELF 278
             EM+   + P  FT +  IDGLCK+G + + ++LF               L+ S C   
Sbjct: 496 HKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPN 555

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             ++ +LI+G C  G    AS+ F+ + C  L  DV    ++I  
Sbjct: 556 HVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQG 600



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 155/323 (47%), Gaps = 26/323 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +  LI+G C E  I +A  + + M   G  PN+ T +T++ G  +  ++   L+L+ E
Sbjct: 229 VIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXE 288

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M   +GD  G+  PNV  +G LIDGLCK   +   +   ++M   G+  N  +       
Sbjct: 289 M---LGD--GLL-PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDG 342

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   L EA  L   + +  + P +FTY+ L+ G C V ++  A  L   M +KGF+P+
Sbjct: 343 YCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPN 402

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+GYCK  N+E+A+ V  +M   G +            P   T +  IDG CK
Sbjct: 403 AVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIE------------PNIITFSTLIDGYCK 450

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +   M L+  + I      V  + +LI G  K G  + A  L  ++    L  +V  
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT 510

Query: 317 YNILIHALGKEGQIKKENYLLLS 339
            + LI  L K+G+I     L L+
Sbjct: 511 LSCLIDGLCKDGRISDAIKLFLA 533



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 156/333 (46%), Gaps = 48/333 (14%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F  LI  F   G + +A  +  KM      P +  C+ ++ GL + G  +   K++ +MV
Sbjct: 129 FGVLIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVLDGLVKKGRFDTMWKVYGDMV 185

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
                      PNV  YG+LIDG C+                           +   ++A
Sbjct: 186 ARGA------SPNVVTYGTLIDGCCR---------------------------QGDFLKA 212

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
            RL + M+++ + P +  YT L+ G C   +++ A ++F +M   G +P++++Y+ +++G
Sbjct: 213 FRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDG 272

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           YCK  +V++A+ +  EM+ +G            ++P   T  I IDGLCK   ++   + 
Sbjct: 273 YCKIAHVKKALELYXEMLGDG------------LLPNVVTFGILIDGLCKTDEMVSARKF 320

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +        + ++N LI G CK G    A  L +++    ++ DV  Y+ILI  L  
Sbjct: 321 LIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCG 380

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             ++++ + LL  M++ G   +  T+NTL+  +
Sbjct: 381 VDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY 413



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 136/323 (42%), Gaps = 85/323 (26%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF  LI G C    +  A + +  MA+FG  PN+   + LI G  + GN++  L LH
Sbjct: 297 NVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLH 356

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
            E+            P+VF Y  LI GLC    +++   L  EMK KG     +  NTL+
Sbjct: 357 SEIEKHE------ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLI 410

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+  + +A  +   M ++G+ P I T++ L++GYC  GK+  A+ L+  M  KG +
Sbjct: 411 DGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL 470

Query: 195 PDVFSY-----------------------------------SVLINGYCKNFNVEEAM-- 217
           PDV +Y                                   S LI+G CK+  + +A+  
Sbjct: 471 PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKL 530

Query: 218 -------------------------NVSREMILNGF---------KKIFNEMKLCNVVPE 243
                                    +V    ++ G           K F++M+   + P+
Sbjct: 531 FLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPD 590

Query: 244 TFTCNIFIDGLCKNGHVLEVMEL 266
            FTC + I G  +  H+ +VM L
Sbjct: 591 VFTCIVIIQGHFRAMHLRDVMML 613



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 119/259 (45%), Gaps = 39/259 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI G+C EGN+  A ++  +M   G  PN+ T  TLI G  + G M   + L+
Sbjct: 402 NAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLY 461

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EMV       G+  P+V  Y +LIDG  KD    +   L  EM++ G++ N        
Sbjct: 462 TEMV-----IKGLL-PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515

Query: 137 --LCKKTKLVEANRLLELM------------MQRGL-NPVIFTYTPLLNGYCLVGKVNVA 181
             LCK  ++ +A +L                + R L +P    YT L+ G C  G++  A
Sbjct: 516 DGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKA 575

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
              F  M   G  PDVF+  V+I G+ +  ++ + M +  +++  G            ++
Sbjct: 576 SKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMG------------II 623

Query: 242 PETFTCNIFIDGLCKNGHV 260
           P +    +   G  ++G++
Sbjct: 624 PNSSVYRVLAKGYEESGYL 642



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 20/186 (10%)

Query: 177 KVNVAIALFDSMAR---KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
           +  +  ++F+ ++R     F P+VF   VLI  + +   VEEA+ V  +M          
Sbjct: 105 RSRICCSVFNVLSRLESSKFTPNVFG--VLIIAFSEMGLVEEALWVYYKM---------- 152

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                +V+P    CN+ +DGL K G    + +++  +        V  + +LI GCC+ G
Sbjct: 153 -----DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQG 207

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
            F  A  LF+++  K +   VV Y ILI  L  E +I +   +  +M  +G   ++ T+N
Sbjct: 208 DFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYN 267

Query: 354 TLMISF 359
           T+M  +
Sbjct: 268 TMMDGY 273


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 180/345 (52%), Gaps = 25/345 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTFN+L+ GF  +G   D  +L++ MA  G +PNV + + L+ GL +    +    
Sbjct: 7   PPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEA-- 64

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
             +E+V  M   GG   P++  Y +L+ G CK   V+++++L  E+  +G+  + L    
Sbjct: 65  --EELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTK 122

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  +L EA  LLE M++ G  P + T+  L++G C    + +A +L  +MA  G
Sbjct: 123 VMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASG 182

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              DV +Y+ L++G CK   ++EA            +++   MK     P+    + F+ 
Sbjct: 183 VKADVVTYNTLMDGLCKAGRLQEA------------EQLLERMKASGCAPDVVAYSSFVY 230

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK+G VL   ++   +  S+ +  V  +N+++ G CK G  + A E+  +++  +   
Sbjct: 231 GLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCG 290

Query: 313 -DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +VV Y+ ++  L K G+ ++   ++ +M   GC  DV T+++L+
Sbjct: 291 LNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLV 335



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 154/322 (47%), Gaps = 38/322 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN+LI G C E N+  A  L++ MA  G + +V T +TL+ GL + G +    +L + 
Sbjct: 153 ITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLER 212

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           M  +G         P+V  Y S + GLCK   V     +  +M+D   + N +       
Sbjct: 213 MKASGCA-------PDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILD 265

Query: 137 -LCKKTKLVEANRLLELMMQR---GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
            LCK  K+  A  ++E M      GLN  +  Y+ +++G C +G+   A ++ ++MAR G
Sbjct: 266 GLCKSGKIDTALEMMEQMASSDGCGLN--VVGYSTVVDGLCKLGRTQEARSVMEAMARAG 323

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PDV +YS L+NG CK   +EEA+   REM + G K            P   T    + 
Sbjct: 324 CRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCK------------PNAVTYCSLVH 371

Query: 253 GLCKNGHVLEVMELFPTLEI-----SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           GLC  G + E   +   +        +C   V  +N+LI G CK G  + A + F ++  
Sbjct: 372 GLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRS 431

Query: 308 KNLVADVVAYNILIHALGKEGQ 329
           +    D V+Y+ ++  L + G+
Sbjct: 432 QGCDPDGVSYSTIVEGLARSGR 453



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 169/393 (43%), Gaps = 68/393 (17%)

Query: 14  FIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKK----------------------- 49
            I R  R   D VT+++L+ G+C  G + ++ +L+K+                       
Sbjct: 71  MISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKS 130

Query: 50  ------------MATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97
                       M   GC P + T +TLI+G  R  N+ +   L Q M        G+ K
Sbjct: 131 ARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMA-----ASGV-K 184

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
            +V  Y +L+DGLCK   + + + L   MK  G   + +        LCK  K++ A+++
Sbjct: 185 ADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQV 244

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK-GFMPDVFSYSVLINGYC 208
           LE M     +P + TY  +L+G C  GK++ A+ + + MA   G   +V  YS +++G C
Sbjct: 245 LEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLC 304

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K    +EA +V   M   G +            P+  T +  ++GLCK G + E +E   
Sbjct: 305 KLGRTQEARSVMEAMARAGCR------------PDVVTYSSLVNGLCKAGKIEEAVEAVR 352

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD-----VVAYNILIHA 323
            + +  C+     + SL+ G C  G    A  +  ++S      D     V  YN LI  
Sbjct: 353 EMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGG 412

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L K G+I         M   GC  D  +++T++
Sbjct: 413 LCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIV 445



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 43/276 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+ G C  G +++A QL+++M   GC P+V    + + GL ++G +   L  HQ 
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKV---LNAHQ- 243

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANTL------- 136
           ++  M D    + PNV  Y +++DGLCK   +D   ++  +M    G   N +       
Sbjct: 244 VLEQMRDSD--HDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVD 301

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LCK  +  EA  ++E M + G  P + TY+ L+NG C  GK+  A+     MA +G  P
Sbjct: 302 GLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKP 361

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMI----------------------------LNG 227
           +  +Y  L++G C    + EA  +  EM                             ++ 
Sbjct: 362 NAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDD 421

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
             K F  M+     P+  + +  ++GL ++G  L+ 
Sbjct: 422 ALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 38/200 (19%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V +++++ G C  G  ++A  +++ MA  GCRP+V T  +L+ GL + G +   ++ 
Sbjct: 291 LNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEA 350

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
            +EM        G  KPN   Y SL+ GLC                          C   
Sbjct: 351 VREMA-----MEGC-KPNAVTYCSLVHGLCS-------------------------CG-- 377

Query: 142 KLVEANRLLELMMQRGLN-----PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +L EA R++E M   G       P + TY  L+ G C  G+++ A+  F  M  +G  PD
Sbjct: 378 RLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPD 437

Query: 197 VFSYSVLINGYCKNFNVEEA 216
             SYS ++ G  ++    +A
Sbjct: 438 GVSYSTIVEGLARSGRALQA 457


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 189/373 (50%), Gaps = 44/373 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-LTLKL 81
           N   FN +   F  +  I +A  +  KM   G  PNV    TLI  L + G ++   LK 
Sbjct: 378 NHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKF 437

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           +Q +  G+        PN+  + SL+ GLC     ++  +LF EM ++GI+ N +     
Sbjct: 438 NQMINEGVA-------PNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTI 490

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC + ++++A RL++LM + G  P I +Y  L+ G+CLVGK + A  L D M   G 
Sbjct: 491 MCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGL 550

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI----------------FNEMK- 236
            P+  +Y+ L++GYC++  +++A +V +EM+ NG   +                F+E K 
Sbjct: 551 KPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKE 610

Query: 237 -LCNVVP-----ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
              N++        +T NI ++GL KN  V E +++F +L   + ++ +  FN +I    
Sbjct: 611 LYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALL 670

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  E A  LF  +S   LV DV  Y ++   L +EG +++ + +   ME++GCA    
Sbjct: 671 KDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAP--- 727

Query: 351 TFNTLMISFLQKE 363
             N+LM++FL + 
Sbjct: 728 --NSLMLNFLVRR 738



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 178/414 (42%), Gaps = 70/414 (16%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDA-SQLVKKMATFGCRPNVTTCDTLITG 68
           AFG  ++  +R  + V  N L+KG C    + +A   L+++M+  GC PNV + +TL+ G
Sbjct: 116 AFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKG 175

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
                     L+L   M +G         PN+  Y ++I+G   +  VD+  +LF++M D
Sbjct: 176 FCDENRAEEALELLHMMADGQVRS---CPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTD 232

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY-------- 172
           +GI  N +        LCK   +  A  + + M+ +G+ P I TYT L++GY        
Sbjct: 233 QGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKE 292

Query: 173 ---------------------------CLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
                                      C  GK   A  LFDSM RKG  PDV  Y ++++
Sbjct: 293 VVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILH 352

Query: 206 GYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVP 242
           GY     + E  +    M+ NG                          IFN+M+   + P
Sbjct: 353 GYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSP 412

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
                   ID LCK G V +    F  +        + +F SL+ G C    +E A ELF
Sbjct: 413 NVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELF 472

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++  + +  +VV +N ++  L  EG++ K   L+  ME  G   D+ ++N L+
Sbjct: 473 FEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALI 526



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 159/390 (40%), Gaps = 65/390 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGF-----------------CMEGNIRDASQLVKK 49
           AL  F  F+    RP + + FN L+                    C    IRD    V  
Sbjct: 34  ALKLFDEFLHHA-RPASIIAFNQLLAAVSSASRRGSSSTSELVVSCFNRMIRDCCSKVA- 91

Query: 50  MATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN-----VFCYG 104
                  P+V T   L+    R G +           +G   FG I K       V    
Sbjct: 92  -------PDVFTYSILVGCFCRMGRLE----------HGFAAFGLILKTGWRVNDVVVVN 134

Query: 105 SLIDGLCKDRLVDQTKD-LFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQ 155
            L+ GLC  + V +    L   M + G     ++ NTLL   C + +  EA  LL +M  
Sbjct: 135 RLLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMAD 194

Query: 156 ---RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
              R   P + +Y  ++NG+   G+V+ A  LF  M  +G  P+V +Y+++I+G CK   
Sbjct: 195 GQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQV 254

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           V+ A  V ++MI  G +         N+V  T+TC   I G    G   EV+ +   +  
Sbjct: 255 VDRAEGVFQQMIDKGVRP--------NIV--TYTC--LIHGYLSIGQWKEVVRMLKEMSA 302

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              E     +  L+   CK G    A +LF+ +  K +  DV  Y I++H    +G + +
Sbjct: 303 HGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSE 362

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +  L  M  NG + +   FN +  +F +K
Sbjct: 363 MHSFLDLMVGNGISPNHYIFNIVFCAFAKK 392


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 164/334 (49%), Gaps = 29/334 (8%)

Query: 1   TSKVLGALMAFGSFI-RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV 59
             KV  A   F + +  R + P + V+++ LI GFC    +  A +L K+M    C PNV
Sbjct: 459 AKKVHQAFAIFSTMVSERSFVP-DVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNV 517

Query: 60  TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           TT +  + GL R G +     +++EMV           P+V  Y +LI G    R  DQ 
Sbjct: 518 TTYNAFLNGLMRKGRIADAQGVYEEMV------AAGCSPDVITYSTLIHGFSLARKHDQA 571

Query: 120 KDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
            +LF  M  +G   N +        LCK++K  EA+ L   M++RG +P   TYT LL G
Sbjct: 572 HELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYG 631

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           +C VGK+  A+ +FD M  KG  PDV +Y+ L+ G+ +     EA            K++
Sbjct: 632 FCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEA------------KQL 679

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-CELFVEIFNSLIRGCC 290
           F  M      P+T + NI IDGL K   + + +E+F  +E  + C   +  +NSLI G C
Sbjct: 680 FQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLC 739

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                  A ++F ++    L  D  A+N+L+ A+
Sbjct: 740 GEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAI 773



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 160/350 (45%), Gaps = 30/350 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PLN+V + + + G C  G I  A +  + M       +    D LI  L  +G ++   +
Sbjct: 302 PLNNVAWTAFLSGLCKSGKIEQAFEACRTMQE-SLSSSQPVYDMLIRLLIESGRIDKAEE 360

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
              E+       G   +P+     S+I  LCK   VD    L   M  +G   +      
Sbjct: 361 ACLEIA------GRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSM 414

Query: 137 ----LCKKTKLVEANRLLELMMQR--GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM-A 189
               LCK  K+ EA   L+ M ++    +   F+Y  LLN  C   KV+ A A+F +M +
Sbjct: 415 LINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVS 474

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
            + F+PDV SYS+LI+G+CK   ++E         L   +K++ +M   N VP   T N 
Sbjct: 475 ERSFVPDVVSYSILIDGFCK---IDE---------LGRAEKLYKQMIDLNCVPNVTTYNA 522

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           F++GL + G + +   ++  +  + C   V  +++LI G       + A ELF  +  + 
Sbjct: 523 FLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRG 582

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              + V YN L+H L KE +  + + L   M E GC  D  T+ TL+  F
Sbjct: 583 CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGF 632



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 172/365 (47%), Gaps = 29/365 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKM--ATFGCRPNVT 60
           +V  AL    + I+R Y P +  T + LI   C    I++A + ++ M         +  
Sbjct: 389 RVDSALSLLETMIKRGYCP-DMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCF 447

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           + ++L+  L +   ++    +   MV+        + P+V  Y  LIDG CK   + + +
Sbjct: 448 SYNSLLNSLCKAKKVHQAFAIFSTMVSERS-----FVPDVVSYSILIDGFCKIDELGRAE 502

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L+ +M D     N          L +K ++ +A  + E M+  G +P + TY+ L++G+
Sbjct: 503 KLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGF 562

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
            L  K + A  LF++M  +G  P+  +Y+ L++G CK    +EA  + R+M+  G     
Sbjct: 563 SLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG----- 617

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                C+  P+  T    + G C  G + + +E+F  +     +  V  +N L++G  + 
Sbjct: 618 -----CD--PDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRA 670

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN-GCALDVDT 351
           G    A +LF  +  +    D V++NI+I  L K  ++     +   ME++ GC+ D+ T
Sbjct: 671 GKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVT 730

Query: 352 FNTLM 356
           +N+L+
Sbjct: 731 YNSLI 735



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 150/346 (43%), Gaps = 26/346 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T +S+I+  C  G +  A  L++ M   G  P++ T   LI  L +   +       QE 
Sbjct: 376 TCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEA----QEF 431

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTLL-- 137
           + GM         + F Y SL++ LCK + V Q   +F  M  +       ++ + L+  
Sbjct: 432 LQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDG 491

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK  +L  A +L + M+     P + TY   LNG    G++  A  +++ M   G  PD
Sbjct: 492 FCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPD 551

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +YS LI+G+      ++A  +   MI  G +            P   T N  + GLCK
Sbjct: 552 VITYSTLIHGFSLARKHDQAHELFETMISRGCR------------PNAVTYNCLLHGLCK 599

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
                E  ELF  +    C+     + +L+ G C  G  E A E+F+++  K    DVVA
Sbjct: 600 ESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVA 659

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           YN L+    + G+  +   L   M    C  D  + N +MI  L K
Sbjct: 660 YNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHN-IMIDGLSK 704



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 167/410 (40%), Gaps = 76/410 (18%)

Query: 23  NDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +DV T+N L+       +++ A Q+ +KM   G  PN  T   L+       N +  ++ 
Sbjct: 127 HDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRF 186

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK-- 139
             EMV    D G  +KP+   Y  + + L       +   +F    +K +    +L K  
Sbjct: 187 FGEMV----DKG--FKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKAL 240

Query: 140 ------KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                 + K +EA++L   M++ G  P    Y+ ++  +C +  ++ A  LF  MA +  
Sbjct: 241 LVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESK 300

Query: 194 MP-DVFSYSVLINGYCKNFNVEEAMNVSREM--ILNGFKKIFN----------------- 233
            P +  +++  ++G CK+  +E+A    R M   L+  + +++                 
Sbjct: 301 APLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEE 360

Query: 234 ---EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL-------------------- 270
              E+   N+ P + TC+  I  LCK G V   + L  T+                    
Sbjct: 361 ACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELC 420

Query: 271 ---EISNCELFVE--------------IFNSLIRGCCKFGIFEIASELFNKL-SCKNLVA 312
              +I   + F++               +NSL+   CK      A  +F+ + S ++ V 
Sbjct: 421 KADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVP 480

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           DVV+Y+ILI    K  ++ +   L   M +  C  +V T+N  +   ++K
Sbjct: 481 DVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRK 530



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 24/223 (10%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           EA      +  R     +FTY  LL+       +  A  +F+ M  +G +P+ F+Y+VL+
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKK---IFNEMKLC-----------NVVPETFTCNIF 250
              C   N +EA+    EM+  GFK    ++ ++  C            V        + 
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVA 231

Query: 251 IDGLCKNG---------HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           ++ + K             +E  +LF  +  S C+    I++ ++   CK    + A +L
Sbjct: 232 VEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKL 291

Query: 302 FNKLSCKNLVA-DVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           F +++ ++    + VA+   +  L K G+I++      +M+E+
Sbjct: 292 FLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQES 334


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 170/350 (48%), Gaps = 37/350 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN LIK +   G +  A+ +  +M   G  P+V T  T+I  L R G M+  +    E  
Sbjct: 394 FNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAV----EKF 449

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
           N M D G    P++  Y  LI G C    + + KDL ++M +KG+  +          LC
Sbjct: 450 NQMIDQG--VAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLC 507

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  ++++A  + +  +  GL+P +  Y  L++GYCLVGK+  A+ +FD M   G  P+V 
Sbjct: 508 KLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVV 567

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKI-----------------------FNEM 235
            Y  L+NGYCK   ++E +++ RE++  G K                         F+EM
Sbjct: 568 VYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEM 627

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               +  + +T +I + GL KN    E + LF  L   N ++ +   N +I G  +    
Sbjct: 628 TESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRV 687

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           E A +LF  +S   LV  VV Y+I++  L KEG +++ + +  SME  GC
Sbjct: 688 EEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGC 737



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 169/350 (48%), Gaps = 31/350 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITGL---RRTGNMNL 77
           ++ +  ++L++G C      +A   L+ +M   GC P+V +   ++  L   R++G  + 
Sbjct: 141 IDTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQAD- 199

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--- 134
                 E++  M + G +  PN   Y ++IDG  K+  V++  DLF EM  +GI+ +   
Sbjct: 200 ------ELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLST 253

Query: 135 -----TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                  LCK   + +A  +L  M+ +G+ P  +TY  L+ GY   G+   A+ +   M 
Sbjct: 254 YNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMT 313

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
            +G +PDV + + L+   CK+  +++A +V   M + G K             + F+  I
Sbjct: 314 SQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKT------------DIFSYKI 361

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            ++G    G ++++ ELF  +          IFN LI+   K G+ + A+ +FN++  + 
Sbjct: 362 MLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQG 421

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +  DVV Y+ +I AL + G++         M + G A  + T++ L+  F
Sbjct: 422 VEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGF 471



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 172/366 (46%), Gaps = 39/366 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++ T+NSLI G+   G  ++A ++ KKM + G  P+V T ++L+  L + G     +K  
Sbjct: 285 DNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGK----IKDA 340

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLC-KDRLVDQTKDLFMEMKDKGINANTLL---- 137
           +++ + M   G   K ++F Y  +++G   K  LVD T +LF  M   GI  ++ +    
Sbjct: 341 RDVFDSMAMKG--QKTDIFSYKIMLNGYATKGCLVDLT-ELFNLMLSDGIAPDSHIFNVL 397

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K   L  A  +   M ++G+ P + TY+ ++   C +GK++ A+  F+ M  +G 
Sbjct: 398 IKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGV 457

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK--------IFNEMKLCNVV---- 241
            P + +Y  LI G+C + ++ +A ++  +M+  G +         I N  KL  V+    
Sbjct: 458 APSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQN 517

Query: 242 -----------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
                      P     N  +DG C  G +   + +F  +  +  +  V ++ +L+ G C
Sbjct: 518 IFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYC 577

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  +    LF ++  K +      YNI++H L + G+          M E+G A+D  
Sbjct: 578 KVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRY 637

Query: 351 TFNTLM 356
           T++ ++
Sbjct: 638 TYSIVL 643



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 23/279 (8%)

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEA 146
           +  P +  YG L+D   +      T   F ++   G+  +T+        LC+  +  EA
Sbjct: 103 VLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEA 162

Query: 147 -NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF--MPDVFSYSVL 203
            + LL  M   G  P +F+Y  +L   C   K   A  L   MA  G   +P+  +Y+ +
Sbjct: 163 LDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTV 222

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I+G+ K  +V +A +            +FNEM    + P+  T N  ++ LCK   + + 
Sbjct: 223 IDGFFKEGDVNKACD------------LFNEMVQRGISPDLSTYNCVVNALCKARAMDKA 270

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             +   +           +NSLI G    G ++ A  +  K++ + ++ DVV  N L+ +
Sbjct: 271 EAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMAS 330

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           L K G+IK    +  SM   G   D+ ++  ++  +  K
Sbjct: 331 LCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATK 369



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 130/277 (46%), Gaps = 20/277 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + +N+L+ G+C+ G + +A ++   M + G +PNV    TL+ G  + G ++  L L 
Sbjct: 530 NVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLF 589

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +E+++      GI KP+   Y  ++ GL +       K  F EM + GI  +        
Sbjct: 590 REILH-----KGI-KPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVL 643

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K +   EA  L + +    +   I T   ++ G   + +V  A  LF S++R G +
Sbjct: 644 GGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLV 703

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P V +YS+++    K   VEEA ++   M   G ++  N   L +VV E       +   
Sbjct: 704 PSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCEQP-NSQLLNHVVRELLEKREIVRA- 761

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
               ++ ++ E   +L+ S   L +++F+S  +G C+
Sbjct: 762 --GTYLSKIDERSFSLDHSTTTLLIDLFSS--KGTCR 794



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 15/216 (6%)

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
           NR+      R L+P + TY  L++      +  + +A F  + + G   D    S L+ G
Sbjct: 93  NRVSRAHGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRG 152

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC---KNGHVLEV 263
            C+     EA+++           + + M     VP+ F+  I +  LC   K+G   E+
Sbjct: 153 LCEAKRTAEALDI-----------LLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADEL 201

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           + +      + C      +N++I G  K G    A +LFN++  + +  D+  YN +++A
Sbjct: 202 LRMMAEGG-AVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNA 260

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L K   + K   +L  M + G   D  T+N+L+  +
Sbjct: 261 LCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGY 296


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/381 (31%), Positives = 175/381 (45%), Gaps = 45/381 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMAT--------FGCRPNVTTCDTLITGLRRTG 73
           LN+V++  LI G C  G + +A  L++ +          F  + NV     +I  L R G
Sbjct: 140 LNEVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNG 199

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            ++   + + EM+      G    PN F YGSLI GLC      +   L  EM  +G++ 
Sbjct: 200 FVDEGFEFYNEMM------GNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDV 253

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +          LCK   LVEA  + + M+ RG  P I T T L+ GYCL G V++A  LF
Sbjct: 254 SVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELF 313

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------------- 224
           D++   GF  DV++Y+V I+GYCK   V +A+ V  EM                      
Sbjct: 314 DAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKA 373

Query: 225 --LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
             ++G  +I   M    + P+  TC I +DGLCK+  + + + LF  L  S     V  +
Sbjct: 374 GEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSY 433

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
             LI GCC       A  L   +  KNLV  +V Y+ LI  L + G+I     LL  M  
Sbjct: 434 TILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHV 493

Query: 343 NGCALDVDTFNTLMISFLQKE 363
            G   D  T++ L+ +  +K+
Sbjct: 494 KGPLPDTITYSILLDALWKKQ 514



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 164/335 (48%), Gaps = 37/335 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            F  LI G C  G + +A ++  +M   G  PN+ TC  L+ G    GN+++     +E+
Sbjct: 257 VFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMA----REL 312

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            + +G++G  +K +V+ Y   I G CK   V     +F EM  +G+  N +        L
Sbjct: 313 FDAIGEWG--FKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCL 370

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++  A  +++ M + GL P I T   LL+G C   +++ AI LF+ +   G  PDV
Sbjct: 371 CKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDV 430

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNE 234
           +SY++LI+G C +  + EAMN+ R+M L                           ++ NE
Sbjct: 431 WSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNE 490

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M +   +P+T T +I +D L K  H+ E + LF  +     E  V  +  +I G CK   
Sbjct: 491 MHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSER 550

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
            + A  LF ++  KNLV D+V Y IL +A+ K G 
Sbjct: 551 IDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGS 585



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 27/264 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V  A+  F    R    P N VT+NSLI   C  G +  A ++VK M   G  P++ TC
Sbjct: 340 RVRDAVRVFDEMCREGVVP-NIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTC 398

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             L+ GL ++  ++  + L  ++V       G+  P+V+ Y  LI G C  R + +  +L
Sbjct: 399 CILLDGLCKSKRLDQAILLFNQLVES-----GL-TPDVWSYTILIHGCCTSRRMGEAMNL 452

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             +M  K +  + +        LC+  ++  A RLL  M  +G  P   TY+ LL+    
Sbjct: 453 LRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWK 512

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
              ++ A+ LF+ M ++G  PDV  Y+++I+GYCK+  ++EA+N            +F E
Sbjct: 513 KQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAIN------------LFRE 560

Query: 235 MKLCNVVPETFTCNIFIDGLCKNG 258
           M + N+VP+  T  I  + + K+G
Sbjct: 561 MHMKNLVPDIVTYTILFNAVFKSG 584



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 104/270 (38%), Gaps = 66/270 (24%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           +++RG          +L G C+ G V  A+   D +   GF  +  SY +LING C+N  
Sbjct: 98  ILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGR 157

Query: 213 VEEAMNVSREMIL---------------------------NGFK----KIFNEMKLCNVV 241
           V EA+N+ R +                             NGF     + +NEM    V 
Sbjct: 158 VNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVC 217

Query: 242 PETFTC-----------------------------------NIFIDGLCKNGHVLEVMEL 266
           P  FT                                     + IDGLCKNG ++E  E+
Sbjct: 218 PNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREM 277

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
           F  +     E  +    +L+ G C  G  ++A ELF+ +       DV  YN+ IH   K
Sbjct: 278 FDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCK 337

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            G+++    +   M   G   ++ T+N+L+
Sbjct: 338 VGRVRDAVRVFDEMCREGVVPNIVTYNSLI 367



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 20/190 (10%)

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           +G V+ + ++F  + ++G+  D  + + ++ G C N  V +A+    E++ NGF    NE
Sbjct: 85  LGHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFS--LNE 142

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE----LFVE---IFNSLIR 287
           +          +  I I+GLC+NG V E + L   +E    +     FV+   +  S++ 
Sbjct: 143 V----------SYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVI 192

Query: 288 GC-CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            C C+ G  +   E +N++    +  +   Y  LI  L   G+  +   L+  M   G  
Sbjct: 193 DCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLD 252

Query: 347 LDVDTFNTLM 356
           + V  F  L+
Sbjct: 253 VSVYVFTVLI 262


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 170/342 (49%), Gaps = 27/342 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
            G  ++  Y+P N +T  +L+KG C++G ++ +     K+   G + N  +  TL+ GL 
Sbjct: 110 LGKILKLGYQP-NTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLC 168

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G     +K  + + +           NV  Y ++IDGLCKD+LV++  D + EM  +G
Sbjct: 169 KIGETRCAIKFLRMIEDSSTGL------NVVMYNTIIDGLCKDKLVNEAYDFYSEMNARG 222

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           I  N +         C   +L  A  LL  M+ + +NP ++TY  L++  C  GKV  A 
Sbjct: 223 IFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAK 282

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            L   M  +G   DV +Y+ L++G+CKN N+++A              +F +MK   + P
Sbjct: 283 NLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKA------------TALFMKMKEWGIQP 330

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
             +T    IDGLCK G + +  +LF  L +  C + V  +N +I G CK G+ + A  + 
Sbjct: 331 NKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIK 390

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +K+     + +VV + I+I +L K+ +  K   LL  M   G
Sbjct: 391 SKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKG 432



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 174/379 (45%), Gaps = 55/379 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT------ 78
           V F  ++       +   A  L K+M   G  PN+ T + LI      G M+ +      
Sbjct: 53  VEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFSVLGK 112

Query: 79  -LKLHQE--------MVNGMGDFGGIYKP--------------NVFCYGSLIDGLCKDRL 115
            LKL  +        ++ G+   G + K               N   YG+L++GLCK   
Sbjct: 113 ILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCK--- 169

Query: 116 VDQTKDLF-----MEMKDKGINA---NTL---LCKKTKLVEANRLLELMMQRGLNPVIFT 164
           + +T+        +E    G+N    NT+   LCK   + EA      M  RG+ P + T
Sbjct: 170 IGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVIT 229

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           YT L+ G+CL G++  A +L + M  K   P+V++Y++LI+  CK   V+EA N+  EM 
Sbjct: 230 YTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMH 289

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
             G        +  +VV  T+T    +DG CKN ++ +   LF  ++    +     + +
Sbjct: 290 YRG--------QPADVV--TYTS--LLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTA 337

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI G CK G  + A +LF  L  K    DV  YN++I  L KEG + +   +   ME+NG
Sbjct: 338 LIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNG 397

Query: 345 CALDVDTFNTLMISFLQKE 363
           C  +V TF  ++ S  +K+
Sbjct: 398 CIPNVVTFEIIIRSLFKKD 416



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 14/231 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+ +LI GFC+ G +  A  L+ +M      PNV T   LI  L + G +     L 
Sbjct: 226 NVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLL 285

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM      + G    +V  Y SL+DG CK++ +D+   LFM+MK+ GI  N        
Sbjct: 286 AEM-----HYRG-QPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALI 339

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  +L +A +L + ++ +G    + TY  ++ G C  G ++ A+A+   M   G +
Sbjct: 340 DGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCI 399

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           P+V ++ ++I    K    ++A  +  EMI  G  +  N  ++ ++ P  +
Sbjct: 400 PNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKGLLRFRNFHEIEDLKPTAY 450



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 16/148 (10%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           +P + VT+ SL+ GFC   N+  A+ L  KM  +G +PN  T   LI GL + G +    
Sbjct: 293 QPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQ 352

Query: 80  KLHQE-MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           KL Q+ +V G          +V  Y  +I GLCK+ ++D+   +  +M+D G   N +  
Sbjct: 353 KLFQDLLVKGCC-------IDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTF 405

Query: 137 ------LCKKTKLVEANRLLELMMQRGL 158
                 L KK +  +A +LL  M+ +GL
Sbjct: 406 EIIIRSLFKKDENDKAEKLLHEMIAKGL 433



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 104/262 (39%), Gaps = 58/262 (22%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN-------------- 205
           P I  +  +L     +   + AI+L   M  KG  P++ + ++LIN              
Sbjct: 50  PPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFSV 109

Query: 206 ---------------------GYCKNFNVEEAMN--------------VSREMILNGFKK 230
                                G C    V+++++              VS   +LNG  K
Sbjct: 110 LGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCK 169

Query: 231 IFN---EMKLCNVVPETFT------CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
           I      +K   ++ ++ T       N  IDGLCK+  V E  + +  +        V  
Sbjct: 170 IGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVIT 229

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           + +LI G C  G    A  L N++  KN+  +V  Y ILI AL KEG++K+   LL  M 
Sbjct: 230 YTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMH 289

Query: 342 ENGCALDVDTFNTLMISFLQKE 363
             G   DV T+ +L+  F + +
Sbjct: 290 YRGQPADVVTYTSLLDGFCKNQ 311


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 162/331 (48%), Gaps = 26/331 (7%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P + +T+  +++  C    I DA   V++MAT G +P+    + +++GL +   +   
Sbjct: 4   YAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEA 63

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INA 133
             L ++MV           PNV  Y +LI+GLCK   ++   +LF EM  KG     ++ 
Sbjct: 64  RLLFEKMVKQR------INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSY 117

Query: 134 NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           NTL+   CKK  LV A  + + M++    P + TYT L++G    GKV  A  + D M +
Sbjct: 118 NTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVK 177

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           KG  P+V +YS LI+G+CK   V+EA  +  +M+  G            + P   T NI 
Sbjct: 178 KGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG------------IAPTVVTYNIL 225

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           ++ LC+   + +  +LF  +    C   V  +N+L+R  C     + A  L+ ++  K  
Sbjct: 226 LNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGC 285

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSME 341
             D + Y+ L   L + G++ +   L+  M+
Sbjct: 286 PPDAITYDTLAWGLTRAGKVHEAQELMEKMK 316



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 131/267 (49%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+   YG +++ LCK + +D       EM  +GI  +          LC++ K+ EA  L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            E M+++ +NP + TY  L+NG C   ++  A  LF  MA KG++P   SY+ LI+G+CK
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
             ++  A            K +F++M   N VP   T    IDGL K+G V    E+   
Sbjct: 127 KKDLVAA------------KDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDG 174

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +        V  ++ LI G CK    + A +L  ++  + +   VV YNIL+++L +  +
Sbjct: 175 MVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADK 234

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           ++    L   M +  C   V T+NTL+
Sbjct: 235 LEDAFKLFRGMAQRRCHPTVVTYNTLL 261



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 119/268 (44%), Gaps = 46/268 (17%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F     + Y P  +V++N+LI GFC + ++  A  +  KM    C PNV T  TLI GL 
Sbjct: 102 FKEMAGKGYVP-TEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLS 160

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           ++G +        E+++GM   G    PNV  Y  LIDG CK R VD             
Sbjct: 161 KSGKVQAA----AEVLDGMVKKG--VTPNVATYSCLIDGFCKVRRVD------------- 201

Query: 131 INANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                         EA++LLE M+ +G+ P + TY  LLN  C   K+  A  LF  MA+
Sbjct: 202 --------------EAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQ 247

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           +   P V +Y+ L+   C +  ++ A  +  EMI  G              P+  T +  
Sbjct: 248 RRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKG------------CPPDAITYDTL 295

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELF 278
             GL + G V E  EL   ++++    F
Sbjct: 296 AWGLTRAGKVHEAQELMEKMKLTKRNPF 323



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 12/223 (5%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  ++ +A   +E M  RG+ P  F Y  +L+G C   KV  A  LF+ M ++   P+
Sbjct: 19  LCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPN 78

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ LING CK + +E A  + +EM   G+            VP   + N  IDG CK
Sbjct: 79  VVTYNTLINGLCKAWRIETAYELFKEMAGKGY------------VPTEVSYNTLIDGFCK 126

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              ++   ++F  +  SNC   V  + +LI G  K G  + A+E+ + +  K +  +V  
Sbjct: 127 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y+ LI    K  ++ + + LL  M   G A  V T+N L+ S 
Sbjct: 187 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSL 229



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           M R   P   TY P++   C   +++ A+A  + MA +G  PD F Y+ +++G C+   V
Sbjct: 1   MARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKV 60

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           EEA            + +F +M    + P   T N  I+GLCK   +    ELF  +   
Sbjct: 61  EEA------------RLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGK 108

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
                   +N+LI G CK      A ++F+K+   N V +VV Y  LI  L K G+++  
Sbjct: 109 GYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAA 168

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
             +L  M + G   +V T++ L+  F
Sbjct: 169 AEVLDGMVKKGVTPNVATYSCLIDGF 194


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 177/368 (48%), Gaps = 37/368 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LIK +   G +  A  +  +M   G +P+V T  T+I  L R G M+  +    E 
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAM----EK 451

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            N M D G    P+ + Y  LI G C    + + K+L  E+ + G++ + +        L
Sbjct: 452 FNQMIDQG--VAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNL 509

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++++A  + +L +  GL+P    Y+ L++GYCLVGK+  A+ +FD+M   G  P+ 
Sbjct: 510 CKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPND 569

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI-----------------------FNE 234
             Y  L+NGYCK   ++E +++ REM+  G K                         F+E
Sbjct: 570 VVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 629

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    +     T NI + GL KN    E + LF  L   N ++ +   N++I G  +   
Sbjct: 630 MTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRR 689

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A +LF  +S   LV  VV Y+I+I  L KEG +++   +  SM+  GC  D    N 
Sbjct: 690 VEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 749

Query: 355 LMISFLQK 362
           ++   L+K
Sbjct: 750 VVRELLKK 757



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 173/382 (45%), Gaps = 37/382 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTL 65
           AL  FG  +R   R +N +  N L+KGFC      +A   L+ +    GC P+V +   L
Sbjct: 130 ALAFFGQLLRTGLR-VNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSIL 188

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L   G       L + M  G    G +  P+V  Y ++IDG  K+  V++  DLF E
Sbjct: 189 LKSLCDQGKSGQADDLLRMMAEG----GAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKE 244

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M  +GI  + +        LCK   + +A   L  M+ +G+ P  +TY  L+ GY   G+
Sbjct: 245 MVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQ 304

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREM 223
              A+ +F  M R   +PDV + S+L+   CK   ++EA +V              S  +
Sbjct: 305 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTI 364

Query: 224 ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +LNG+           +F+ M    + P+ +T N+ I      G + + M +F  +    
Sbjct: 365 MLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHG 424

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            +  V  + ++I   C+ G  + A E FN++  + +  D  AY+ LI      G + K  
Sbjct: 425 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 484

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L+  +  NG  LD+  F++++
Sbjct: 485 ELISEIMNNGMHLDIVFFSSII 506



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 153/350 (43%), Gaps = 63/350 (18%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           +++ L+K  C +G    A  L++ MA  G  C P+V    T+I G  + G++N    L +
Sbjct: 184 SYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFK 243

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           EMV       GI  P+   Y S++  LCK R +D+ +    +M +KG+  N         
Sbjct: 244 EMVQR-----GI-PPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIY 297

Query: 137 ------------------------------------LCKKTKLVEANRLLELMMQRGLNP 160
                                               LCK  K+ EA  + + M  +G NP
Sbjct: 298 GYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNP 357

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            +F+YT +LNGY   G +     LFD M   G  PD+++++VLI  Y     +++AM   
Sbjct: 358 NVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM--- 414

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                     IFNEM+   V P+  T    I  LC+ G + + ME F  +          
Sbjct: 415 ---------IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKY 465

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
            ++ LI+G C  G    A EL +++    +  D+V ++ +I+ L K G++
Sbjct: 466 AYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV 515



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 125/272 (45%), Gaps = 23/272 (8%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANTL--------LCKKTKLVEANRL 149
           N+     L+ G C+ +  D+  D+ +    + G   +          LC + K  +A+ L
Sbjct: 145 NIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 204

Query: 150 LELMMQRGL--NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           L +M + G   +P +  Y+ +++G+   G VN A  LF  M ++G  PD  +YS +++  
Sbjct: 205 LRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHAL 264

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK   +++A    R+M+  G            V+P  +T N  I G    G   E + +F
Sbjct: 265 CKARAMDKAEAFLRQMVNKG------------VLPNNWTYNNLIYGYSSTGQWKEAVRVF 312

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +   +    V   + L+   CK+G  + A ++F+ ++ K    +V +Y I+++    +
Sbjct: 313 KEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATK 372

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           G +     L   M  +G A D+ TFN L+ ++
Sbjct: 373 GCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAY 404



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 126/280 (45%), Gaps = 25/280 (8%)

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEA 146
           +  P    Y  L+D   +    +     F ++   G+  N ++        C+  +  EA
Sbjct: 106 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEA 165

Query: 147 -NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM--PDVFSYSVL 203
            + LL    + G  P +F+Y+ LL   C  GK   A  L   MA  G +  PDV +YS +
Sbjct: 166 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTV 225

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I+G+ K  +V +A ++ +EM+  G            + P+  T +  +  LCK    ++ 
Sbjct: 226 IDGFFKEGDVNKACDLFKEMVQRG------------IPPDFVTYSSVVHALCK-ARAMDK 272

Query: 264 MELFPTLEISNCELFVE-IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            E F    ++   L     +N+LI G    G ++ A  +F ++   +++ DVV  ++L+ 
Sbjct: 273 AEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 332

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +L K G+IK+   +  +M   G   +V ++  ++  +  K
Sbjct: 333 SLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATK 372



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 90/206 (43%), Gaps = 13/206 (6%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R L+P   TY  L++      +  +A+A F  + R G   ++   + L+ G+C+    +E
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDE 164

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN- 274
           A+++           + +       VP+ F+ +I +  LC  G   +  +L   +     
Sbjct: 165 ALDI-----------LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA 213

Query: 275 -CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            C   V  ++++I G  K G    A +LF ++  + +  D V Y+ ++HAL K   + K 
Sbjct: 214 VCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKA 273

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
              L  M   G   +  T+N L+  +
Sbjct: 274 EAFLRQMVNKGVLPNNWTYNNLIYGY 299


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 162/331 (48%), Gaps = 26/331 (7%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P + +T+  +++  C    I DA   V++MAT G +P+    + +++GL +   +   
Sbjct: 109 YAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEA 168

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INA 133
             L ++MV           PNV  Y +LI+GLCK   ++   +LF EM  KG     ++ 
Sbjct: 169 RLLFEKMVKQR------INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSY 222

Query: 134 NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           NTL+   CKK  LV A  + + M++    P + TYT L++G    GKV  A  + D M +
Sbjct: 223 NTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVK 282

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           KG  P+V +YS LI+G+CK   V+EA  +  +M+  G            + P   T NI 
Sbjct: 283 KGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG------------IAPTVVTYNIL 330

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           ++ LC+   + +  +LF  +    C   V  +N+L+R  C     + A  L+ ++  K  
Sbjct: 331 LNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGC 390

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSME 341
             D + Y+ L   L + G++ +   L+  M+
Sbjct: 391 PPDAITYDTLAWGLTRAGKVHEAQELMEKMK 421



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 162/371 (43%), Gaps = 54/371 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL--- 81
            TFN++  GF   G +    ++ + M   G     +    LI+ L + GN +   KL   
Sbjct: 11  ATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHT 70

Query: 82  ----------------------------HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
                                        +E++  M  +     P+   YG +++ LCK 
Sbjct: 71  MRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA---PPDALTYGPIVERLCKT 127

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
           + +D       EM  +GI  +          LC++ K+ EA  L E M+++ +NP + TY
Sbjct: 128 KRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTY 187

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L+NG C   ++  A  LF  MA KG++P   SY+ LI+G+CK  ++  A         
Sbjct: 188 NTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAA--------- 238

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
              K +F++M   N VP   T    IDGL K+G V    E+   +        V  ++ L
Sbjct: 239 ---KDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCL 295

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G CK    + A +L  ++  + +   VV YNIL+++L +  +++    L   M +  C
Sbjct: 296 IDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRC 355

Query: 346 ALDVDTFNTLM 356
              V T+NTL+
Sbjct: 356 HPTVVTYNTLL 366



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 119/268 (44%), Gaps = 46/268 (17%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F     + Y P  +V++N+LI GFC + ++  A  +  KM    C PNV T  TLI GL 
Sbjct: 207 FKEMAGKGYVP-TEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLS 265

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           ++G +        E+++GM   G    PNV  Y  LIDG CK R VD             
Sbjct: 266 KSGKVQAA----AEVLDGMVKKG--VTPNVATYSCLIDGFCKVRRVD------------- 306

Query: 131 INANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                         EA++LLE M+ +G+ P + TY  LLN  C   K+  A  LF  MA+
Sbjct: 307 --------------EAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQ 352

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           +   P V +Y+ L+   C +  ++ A  +  EMI  G              P+  T +  
Sbjct: 353 RRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKG------------CPPDAITYDTL 400

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELF 278
             GL + G V E  EL   ++++    F
Sbjct: 401 AWGLTRAGKVHEAQELMEKMKLTKRNPF 428



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 22/233 (9%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M  R + P   T+  + +G+   G++     ++  M   G+      Y +LI+  CK  N
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 213 VEEAMNVSREMILNGFKK-------IFNEMKLCNVV---------------PETFTCNIF 250
            +EA  +   M L  FK+       I N +   N V               P+  T    
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPI 120

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           ++ LCK   + + +     +     +    I+N ++ G C+    E A  LF K+  + +
Sbjct: 121 VERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 180

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             +VV YN LI+ L K  +I+    L   M   G      ++NTL+  F +K+
Sbjct: 181 NPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKK 233


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 123/462 (26%), Positives = 196/462 (42%), Gaps = 108/462 (23%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  AL  FG   +    P + VTF +L+ G C+E  + +A  L  +M    CRPNV T
Sbjct: 128 SKLPFALSTFGKITKLGLHP-DVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVT 186

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGIYK--------- 97
             TL+ GL R G +   + L   M               V+GM   G             
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME 246

Query: 98  ------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------------------- 131
                 PNV  Y ++ID LCKD      ++LF EM++KGI                    
Sbjct: 247 EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRW 306

Query: 132 -NANTLL----------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            +A  LL                       K+ K  EA  L + M+ RG+ P   TY+ +
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI---- 224
           ++G+C   +++ A  +F  MA KG  P++ +++ LI+GYC    +++ M +  EM     
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 225 -------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                              LN    +  EM    + P+  TC+  +DGLC NG + + +E
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 266 LFPTLEISNCEL-----------FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           +F  ++ S  +L            V+ +N LI G    G F  A EL+ ++  + +V D 
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + Y+ +I  L K+ ++ +   +  SM     + +V TF TL+
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 171/380 (45%), Gaps = 48/380 (12%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NS+I GFC  G   DA QL+++M      P+V T + LI    + G      +L+ EM
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           +       GI  PN   Y S+IDG CK   +D  + +F  M  KG     I  NTL+   
Sbjct: 352 LPR-----GII-PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   ++ +   LL  M + GL     TY  L++G+ LVG +N A+ L   M   G  PD+
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDI 465

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM-------------------------ILNGF---- 228
            +   L++G C N  +++A+ + + M                         +++G     
Sbjct: 466 VTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG 525

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                ++++ EM    +VP+T T +  IDGLCK   + E  ++F ++   +    V  F 
Sbjct: 526 KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFT 585

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LI G CK G  +   ELF ++  + +VA+ + Y  LI    K G I     +   M  +
Sbjct: 586 TLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISS 645

Query: 344 GCALDVDTFNTLMISFLQKE 363
           G   D  T   ++     KE
Sbjct: 646 GVYPDTITIRNMLTGLWSKE 665



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 139/265 (52%), Gaps = 27/265 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+N+LI GF + G++  A  L+++M + G  P++ TCDTL+ GL   G +   L++ 
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 83  QEMVNGMGD------FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           + M     D      F G+ +P+V  Y  LI GL  +    + ++L+ EM  +GI  +T+
Sbjct: 489 KVMQKSKKDLDASHPFNGV-EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LCK+++L EA ++ + M  +  +P + T+T L+NGYC  G+V+  + LF  M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            R+G + +  +Y  LI G+ K  N+  A+++ +EMI +G            V P+T T  
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG------------VYPDTITIR 655

Query: 249 IFIDGLCKNGHVLEVMELFPTLEIS 273
             + GL     +   + +   L++S
Sbjct: 656 NMLTGLWSKEELKRAVAMLEKLQMS 680



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 153/343 (44%), Gaps = 29/343 (8%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           L  GF     + DA  L   M      P+V     L+  + R    +L + L+Q+M    
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKT 141
                  + +++ +  LI   C    +      F ++   G++ + +        LC + 
Sbjct: 110 ------IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVED 163

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           ++ EA  L   M +    P + T+T L+NG C  G++  A+AL D M   G  P   +Y 
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            +++G CK  +   A+N+ R+M            ++ +++P     +  ID LCK+G   
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKM-----------EEVSHIIPNVVIYSAIIDSLCKDGRHS 272

Query: 262 EVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +   LF   E+    +F ++F  NS+I G C  G +  A +L  ++  + +  DVV YN 
Sbjct: 273 DAQNLFT--EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNA 330

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           LI+A  KEG+  +   L   M   G   +  T+++++  F ++
Sbjct: 331 LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  A   F S   + + P N VTF +LI G+C  G + D  +L  +M   G   N  T
Sbjct: 560 SRLDEATQMFDSMGSKSFSP-NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL 110
             TLI G R+ GN+N  L + QEM++      G+Y P+     +++ GL
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMIS-----SGVY-PDTITIRNMLTGL 661


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/384 (32%), Positives = 181/384 (47%), Gaps = 62/384 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++V + +LI G C  G  RDA +L++KM   G RPN+   + ++ GL + G +     L 
Sbjct: 160 DEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLC 219

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM---KDKGINANTL--- 136
            EMV      G     +VF Y SLI G C          L  EM   +D   +  T    
Sbjct: 220 SEMV------GKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNIL 273

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK   + EA  +  LM++RGL P + +   L+NG+CL G ++ A  +FD M  +G 
Sbjct: 274 VDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGK 333

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P+V SYS LINGYCK   V+EA+            ++  EM   N+VP+T T N  +DG
Sbjct: 334 LPNVISYSTLINGYCKVKMVDEAL------------RLLTEMHQRNLVPDTVTYNCLLDG 381

Query: 254 LCKNGHVLEVMELFPTLEISN------------------------CELFVEI-------- 281
           L K+G VL   +L   +  S                           LF  I        
Sbjct: 382 LSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPN 441

Query: 282 ---FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
              +N LI G CK G  + A E+F  LS K    ++  YNI+I+ L +EG + +   LLL
Sbjct: 442 IRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLL 501

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            M ++G   +  TF+ L+ + L+K
Sbjct: 502 EMVDDGFPPNAVTFDPLVRALLEK 525



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 186/388 (47%), Gaps = 67/388 (17%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++  T  +L+KG C++G   +A  L     + G   +     TLI GL + G     ++L
Sbjct: 124 VDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIEL 183

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL 136
            ++M     + GG+ +PN+  Y  ++DGLCK+ LV +   L  EM  KGI       N+L
Sbjct: 184 LRKM-----EKGGV-RPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSL 237

Query: 137 ---------------------------------------LCKKTKLVEANRLLELMMQRG 157
                                                  LCK   + EA  +  LM++RG
Sbjct: 238 IHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRG 297

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           L P + +   L+NG+CL G ++ A  +FD M  +G +P+V SYS LINGYCK   V+EA+
Sbjct: 298 LEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEAL 357

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                       ++  EM   N+VP+T T N  +DGL K+G VL   +L   +  S    
Sbjct: 358 ------------RLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAP 405

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK--KENY 335
            +  +N L+    K    + A  LF  +    +  ++  YNILI  L K G++K  KE +
Sbjct: 406 DLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIF 465

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQKE 363
            LLS++  GC  ++ T+N +MI+ L++E
Sbjct: 466 QLLSVK--GCRPNIRTYN-IMINGLRRE 490



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 164/389 (42%), Gaps = 72/389 (18%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
           DA     +M      P++ + + L++ + +T +    + L   +     D  G  KP++ 
Sbjct: 38  DAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHL-----DSKGTPKPSLV 92

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
                I+ L     +     +  ++  +G   +          LC K +  EA  L +  
Sbjct: 93  TLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHA 152

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           + +G +     Y  L+NG C +GK   AI L   M + G  P++  Y+++++G CK   V
Sbjct: 153 VSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLV 212

Query: 214 EEAMNVSREMI-----------------------LNGFKKIFNEMKLC-NVVPETFTCNI 249
            EA  +  EM+                         G  ++ NEM +  +V P+ +T NI
Sbjct: 213 TEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNI 272

Query: 250 FIDGLCKNGHVLEVMELFPTL-------EISNC-----------------ELF------- 278
            +D LCK G V E   +F  +       ++ +C                 E+F       
Sbjct: 273 LVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERG 332

Query: 279 ----VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
               V  +++LI G CK  + + A  L  ++  +NLV D V YN L+  L K G++  E 
Sbjct: 333 KLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEW 392

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQKE 363
            L+ +M  +G A D+ T+N L+  +L++E
Sbjct: 393 DLVEAMRASGQAPDLITYNVLLDDYLKRE 421


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 178/349 (51%), Gaps = 30/349 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F + ++R + P + +T N+LIKG C  G I+       ++   G + +  +  TLI
Sbjct: 112 AFSVFANILKRGFHP-DAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLI 170

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G      +L +++       G   KP+V  Y ++I+ LCK++L+    D++ EM
Sbjct: 171 NGLCKAGETKAVARLLRKLE------GHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEM 224

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK- 177
             KGI+ + +         C   K+ EA  LL  M  + +NP ++T++ L++     GK 
Sbjct: 225 IVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKK 284

Query: 178 --VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
             V+ A++LF+ M  K  +PD+ +Y+ LI+G CKN ++E A+ + +EM  +G +      
Sbjct: 285 KMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQ------ 338

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                 P+ ++  I +DGLCK G +    E F  L +  C L V  +N +I G CK G+F
Sbjct: 339 ------PDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLF 392

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             A +L +K+  K  + + + +  +I AL ++ +  K   +L  M   G
Sbjct: 393 GEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIARG 441



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 17/217 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL---TLKL 81
           VT+ +LI GFC+ G +++A  L+ +M      P+V T   LI  L + G   +    + L
Sbjct: 234 VTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSL 293

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM +          P++  Y SLIDGLCK+  +++   L  EMK+ GI  +       
Sbjct: 294 FEEMKHKN------MIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTIL 347

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  +L  A    + ++ +G +  ++ Y  ++NG C  G    A+ L   M  KG 
Sbjct: 348 LDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGC 407

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
           MP+  ++  +I    +    ++A  + REMI  G  K
Sbjct: 408 MPNAITFRTIICALSEKDENDKAEKILREMIARGLLK 444



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 108/226 (47%), Gaps = 26/226 (11%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+ P + T + L+N +C    + +A ++F ++ ++GF PD  + + LI G C    +++ 
Sbjct: 88  GITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKT 147

Query: 217 MNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFTCNIFIDG 253
           +    +++  GF+                       ++  +++  +V P+    N  I+ 
Sbjct: 148 LYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINS 207

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCKN  + +  +++  + +      V  + +LI G C  G  + A  L N++  KN+  D
Sbjct: 208 LCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPD 267

Query: 314 VVAYNILIHALGKEGQ---IKKENYLLLSMEENGCALDVDTFNTLM 356
           V  +++LI ALGKEG+   + +   L   M+      D+ T+N+L+
Sbjct: 268 VYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLI 313



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 12/208 (5%)

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
           LM+     P  F +  +L+      +    I+LF      G  PD+ + S+LIN +C   
Sbjct: 48  LMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQA 107

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
           ++  A +V   ++  GF             P+  T N  I GLC  G + + +     + 
Sbjct: 108 HITLAFSVFANILKRGFH------------PDAITLNTLIKGLCFRGEIKKTLYFHDQVV 155

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
               +L    + +LI G CK G  +  + L  KL   ++  DVV YN +I++L K   + 
Sbjct: 156 AQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLG 215

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
               +   M   G + DV T+ TL+  F
Sbjct: 216 DACDVYSEMIVKGISPDVVTYTTLIHGF 243


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 175/364 (48%), Gaps = 40/364 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N LI  FC EG+IRDA  +  ++   G RP   + +TLI GL ++ N++   +L + M 
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTM- 284

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------C 138
               +   IY P+VF Y  LI GLCK+  +D  + LF EM+ +G+  N +          
Sbjct: 285 ----EENRIY-PDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQY 339

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +  ++  A      M+  G+ P +  Y  LLNG C VG VN A  L D M   G  PD  
Sbjct: 340 RSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKI 399

Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEM 235
           +Y+ LI+GYCK  ++E AM + + M              +++GF         ++   EM
Sbjct: 400 TYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREM 459

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               + P+  T  + IDG CK G+V    +L   ++I+  +  V  +N L+ G CK G  
Sbjct: 460 VEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQM 519

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + A+ L   +    +  D + YNIL+    K G  K E+ L L   E G  +D   + +L
Sbjct: 520 KNANMLLEAMLNLGVTPDDITYNILLEGHCKNG--KAEDLLKLR-NEKGLIVDYAYYTSL 576

Query: 356 MISF 359
           +  +
Sbjct: 577 VSEY 580



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 164/361 (45%), Gaps = 37/361 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F++L+  +   G + DA Q  + +     +     C  L+  +  + +       + E++
Sbjct: 156 FDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEIL 215

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
               ++G  + P V  Y  LI+  CK+  +   K +F E++ +G+   T+        LC
Sbjct: 216 ----EYG--FPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L E  RL + M +  + P +FTY+ L++G C  G+++VA  LFD M ++G  P+  
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEM 235
           +++ LI+G  ++  ++ AMN   +M              +LNG          +K+ +EM
Sbjct: 330 TFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           K+  + P+  T    IDG CK G +   ME+   +      L    F +LI G C+ G  
Sbjct: 390 KMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRV 449

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
             A     ++    +  D   Y ++I    K+G +K    LL  M+ NG    V T+N L
Sbjct: 450 RDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVL 509

Query: 356 M 356
           M
Sbjct: 510 M 510



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 132/265 (49%), Gaps = 29/265 (10%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F    +R  RP N +TF +LI G      +  A     +M T G +P++   +TL+ GL 
Sbjct: 316 FDEMQQRGLRP-NGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLC 374

Query: 71  RTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
           + G++N   KL  EM + GM       KP+   Y +LIDG CK+  ++   ++   M ++
Sbjct: 375 KVGDVNKARKLVDEMKMVGM-------KPDKITYTTLIDGYCKEGDLESAMEIRKGMNEE 427

Query: 130 GINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           G+  + +         C+  ++ +A R L  M++ G+ P   TYT +++GYC  G V + 
Sbjct: 428 GVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMG 487

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             L   M   G  P V +Y+VL+NG CK   ++ A N+  E +LN             V 
Sbjct: 488 FKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNA-NMLLEAMLN-----------LGVT 535

Query: 242 PETFTCNIFIDGLCKNGHVLEVMEL 266
           P+  T NI ++G CKNG   ++++L
Sbjct: 536 PDDITYNILLEGHCKNGKAEDLLKL 560



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 14/206 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +N+L+ G C  G++  A +LV +M   G +P+  T  TLI G  + G++   +    E
Sbjct: 364 VMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAM----E 419

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +  GM +  G+   NV  + +LI G C+D  V   +    EM + G+  +          
Sbjct: 420 IRKGMNE-EGVVLDNV-AFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDG 477

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CKK  +    +LL+ M   G  P + TY  L+NG C  G++  A  L ++M   G  PD
Sbjct: 478 YCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPD 537

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSRE 222
             +Y++L+ G+CKN   E+ + +  E
Sbjct: 538 DITYNILLEGHCKNGKAEDLLKLRNE 563


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 194/400 (48%), Gaps = 58/400 (14%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F + +++ Y   + +TF +LIKG C++G I  A     K+   G + N  +  TLI GL 
Sbjct: 70  FANILKKGYGS-DAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLC 128

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G     L+  + +       G + +P+V  Y ++IDGLCKD+LV+   +L+ EM  K 
Sbjct: 129 KVGQTRAALEFLRRID------GKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKR 182

Query: 131 I-----NANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           I       NTL   LC   +L +A  LL  M+   +NP ++T++ L++ +C  GK+  A 
Sbjct: 183 ICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAK 242

Query: 183 ALFDSMARKGFMPDVFSYSVLINGY--------CKN-FN-----VEEAMNVSREMILNGF 228
            +F  M ++   P++ +Y+ L++G+         K+ FN     V+EAMN+  EM    F
Sbjct: 243 NVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEM---HF 299

Query: 229 KKIFNEMKLCNVV--------------------------PETFTCNIFIDGLCKNGHVLE 262
           K+I+ +M + N +                          P+ FT N  +D LCKN HV +
Sbjct: 300 KQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDK 359

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            +EL   L+    +  V  +N LI G CK G  + A ++F  L  K    DV  YN +I 
Sbjct: 360 AIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIK 419

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              K+G   +   ++  M+++GC+ D      ++ S   K
Sbjct: 420 GFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSLFDK 459



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 33/306 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI G C+   ++DA  L+ KM      P V T   LI    + G M     +   
Sbjct: 188 VTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAV 247

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M+          KPN+  Y SL+DG     +V + K +F          NT++    K+V
Sbjct: 248 MMKE------DVKPNIVTYNSLMDGHHLVNVVKKAKSIF----------NTMI----KMV 287

Query: 145 -EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA  L E M  + + P +  Y  L++G C  G+   A+     M  +G  PD+F+Y+ L
Sbjct: 288 DEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSL 347

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           ++  CKN++V++A+            ++  ++K   + P   T NI I+GLCK+G + + 
Sbjct: 348 LDALCKNYHVDKAI------------ELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDA 395

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
            ++F  L +      V  +N++I+G CK G+F+    + +K+       D     I+I +
Sbjct: 396 EKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRS 455

Query: 324 LGKEGQ 329
           L  +G+
Sbjct: 456 LFDKGE 461



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 30/239 (12%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           +V  +R +E     GL   + T + L+N Y  +G+  ++ ++F ++ +KG+  D  +++ 
Sbjct: 31  VVSLHRQMEF---NGLASNLVTLSILINCYSQLGQNALSFSVFANILKKGYGSDAITFTT 87

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK-------LCN---------------- 239
           LI G C    + +A++   +++  GFK   N++        LC                 
Sbjct: 88  LIKGLCLKGEIHKALHFHDKVVAQGFK--LNQVSYGTLINGLCKVGQTRAALEFLRRIDG 145

Query: 240 --VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             V P+    N  IDGLCK+  V +   L+  +        V  +N+LI G C     + 
Sbjct: 146 KLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKD 205

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A  L +K+  +++   V  ++ILI A  KEG++K+   +   M +     ++ T+N+LM
Sbjct: 206 AIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLM 264



 Score = 45.1 bits (105), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N++IKGFC +G   +   +V KM   GC P+   C+ +I  L   G  +   K  + +
Sbjct: 413 TYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSLFDKGENDKAGKFREMI 472

Query: 86  VNG 88
           V G
Sbjct: 473 VRG 475


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1164

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 176/367 (47%), Gaps = 31/367 (8%)

Query: 3   KVLGALMAFGSF--IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           K   A++ F  F  +  C+   N  ++N +I   C  G I +A  L+  M   G  P+V 
Sbjct: 649 KTATAIIVFREFPEVGVCW---NVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVI 705

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           +  T+I G  R G ++   KL ++M        G+ KPN + YGS+I  LC+   + + +
Sbjct: 706 SYSTVINGYCRFGELDKVWKLIEKMKQK-----GL-KPNSYTYGSIIGLLCRICKLAEAE 759

Query: 121 DLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           + F EM  +GI  +T++        CK+  +  A++    M  R + P + TYT +++G+
Sbjct: 760 EAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 819

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C +G +  A  LF  M  +G  PD+ +++ L+NGYCK  ++++A  V   MI  G     
Sbjct: 820 CQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAG----- 874

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                C+  P   T    IDGLCK G +    EL   +     +  +  +NS++ G CK 
Sbjct: 875 -----CS--PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 927

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  E A +L  +     L AD V Y  L+ A  K G++ K   +L  M   G    + TF
Sbjct: 928 GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTF 987

Query: 353 NTLMISF 359
           N LM  F
Sbjct: 988 NVLMNGF 994



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 168/351 (47%), Gaps = 27/351 (7%)

Query: 17   RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            + Y P + ++++++I G+C  G +    +L++KM   G +PN  T  ++I  L R   + 
Sbjct: 698  KGYTP-DVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLA 756

Query: 77   LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
               +   EM+ G G       P+   Y +L+DG CK   +      F EM  + I  + L
Sbjct: 757  EAEEAFSEMI-GQGIL-----PDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVL 810

Query: 137  --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                     C+   +VEA +L   M+ RGL P I T+T L+NGYC  G +  A  + + M
Sbjct: 811  TYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHM 870

Query: 189  ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             + G  P+V +Y+ LI+G CK  +++ A  +  EM   G +            P  FT N
Sbjct: 871  IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ------------PNIFTYN 918

Query: 249  IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
              ++GLCK+G++ E ++L    E +        + +L+   CK G  + A E+  ++  K
Sbjct: 919  SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGK 978

Query: 309  NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             L   +V +N+L++     G ++    LL  M   G A +  TFN L+  +
Sbjct: 979  GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQY 1029



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 149/297 (50%), Gaps = 26/297 (8%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            +TF  L+ G+C  G+I+DA ++   M   GC PNV T  TLI GL + G+++       E
Sbjct: 845  ITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSA----NE 900

Query: 85   MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            +++ M   G   +PN+F Y S+++GLCK   +++   L  E +  G+NA+T+        
Sbjct: 901  LLHEMWKIG--LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDA 958

Query: 137  LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             CK  ++ +A  +L  M+ +GL P I T+  L+NG+CL G +     L + M  KG  P+
Sbjct: 959  YCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 1018

Query: 197  VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
              +++ L+  YC   N++ A  + ++M   G            V P+  T    + G C 
Sbjct: 1019 ATTFNCLVKQYCIRNNLKAATAIYKDMCSRG------------VEPDGKTYENLVKGHCN 1066

Query: 257  NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
              ++ E   LF  ++     + V  ++ LI+G  K   F  A E+F+++    L AD
Sbjct: 1067 ARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAAD 1123



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 152/337 (45%), Gaps = 26/337 (7%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            +T+ ++I GFC  G++ +A +L  +M   G  P++ T   L+ G  + G++    ++H  
Sbjct: 810  LTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNH 869

Query: 85   MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            M+           PNV  Y +LIDGLCK+  +D   +L  EM   G+  N          
Sbjct: 870  MIQAGC------SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 923

Query: 137  LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            LCK   + EA +L+      GLN    TYT L++ YC  G+++ A  +   M  KG  P 
Sbjct: 924  LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPT 983

Query: 197  VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            + +++VL+NG+C +  +E+             +K+ N M    + P   T N  +   C 
Sbjct: 984  IVTFNVLMNGFCLHGMLEDG------------EKLLNWMLAKGIAPNATTFNCLVKQYCI 1031

Query: 257  NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              ++     ++  +     E   + + +L++G C     + A  LF ++  K     V  
Sbjct: 1032 RNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVST 1091

Query: 317  YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
            Y++LI    K  +  +   +   M  +G A D + F+
Sbjct: 1092 YSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFD 1128



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 128/270 (47%), Gaps = 28/270 (10%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N VT+ +LI G C EG++  A++L+ +M   G +PN+ T ++++ GL ++GN+   +KL 
Sbjct: 878  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL- 936

Query: 83   QEMVNGMGDFGGI-YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
                  +G+F       +   Y +L+D  CK   +D+ +++  EM  KG+    +     
Sbjct: 937  ------VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVL 990

Query: 137  ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                C    L +  +LL  M+ +G+ P   T+  L+  YC+   +  A A++  M  +G 
Sbjct: 991  MNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGV 1050

Query: 194  MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             PD  +Y  L+ G+C   N++EA  + +EM   GF    +            T ++ I G
Sbjct: 1051 EPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVS------------TYSVLIKG 1098

Query: 254  LCKNGHVLEVMELFPTLEISNCELFVEIFN 283
              K    +E  E+F  +         EIF+
Sbjct: 1099 FFKRKKFVEAREIFDQMRRDGLAADKEIFD 1128



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 17/222 (7%)

Query: 143 LVEANRLLELMMQRGLNPVIFT---YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           L EA ++ E M+  GL   + +   Y   L+  C   K   AI +F      G   +V S
Sbjct: 614 LPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDC--NKTATAIIVFREFPEVGVCWNVAS 671

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+++I+  C+   + EA ++   M L G+             P+  + +  I+G C+ G 
Sbjct: 672 YNIVIHFVCQLGRINEAHHLLLLMELKGY------------TPDVISYSTVINGYCRFGE 719

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + +V +L   ++    +     + S+I   C+      A E F+++  + ++ D + Y  
Sbjct: 720 LDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTT 779

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           L+    K G I+  +     M       DV T+  ++  F Q
Sbjct: 780 LVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 821


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 188/392 (47%), Gaps = 42/392 (10%)

Query: 6   GALMAFGSF----IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           GAL+   +     +R    P +   +N LI  +  +G + +A  +  KM   G  P+  T
Sbjct: 320 GALVGMHALLDLMVRNGIHP-DHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVT 378

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
              +I  L ++G +   +   ++M+    D G    P    Y SLI GLC     ++ ++
Sbjct: 379 YGAVIGILCKSGRVEDAMLYFEQMI----DEG--LSPGNIVYNSLIHGLCTCNKWERAEE 432

Query: 122 LFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L +EM D+GI  NT+         CK+ +++E+ +L +LM++ G+ P I TY+ L++GYC
Sbjct: 433 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 492

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---------- 223
           L GK++ A+ L   M   G  P+  +Y  LINGYCK   + +A+ + +EM          
Sbjct: 493 LAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDII 552

Query: 224 ----ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
               IL G          K+++  +       E  T NI + GLCKN    + + +F  L
Sbjct: 553 TYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNL 612

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
            + + +L    FN +I    K G    A +LF   S   LV +   Y ++   +  +G +
Sbjct: 613 CLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLL 672

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           ++ + L LSME+NGC +D    N ++   LQ+
Sbjct: 673 EELDQLFLSMEDNGCTVDSGMLNFIVRELLQR 704



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 175/399 (43%), Gaps = 65/399 (16%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ +++ +R +  +TF  L+KG C +    DA  +V ++M    C P+V +C  L+ G
Sbjct: 109 ALGNVVKKGFR-VEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKG 167

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +G    GG   P+V  Y ++I+G  K+    +    + EM D
Sbjct: 168 LCDENRSQEALELPHMMADGR---GGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLD 224

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           + I+ + +        LCK   + +A  +L  M++ G+ P   TYT +++GYC  G+   
Sbjct: 225 RRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKE 284

Query: 181 AI----------------------------------------ALFDSMARKGFMPDVFSY 200
           AI                                        AL D M R G  PD + Y
Sbjct: 285 AIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVY 344

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           ++LI  Y K   V+EAM V            F++M+   + P+  T    I  LCK+G V
Sbjct: 345 NILICAYAKQGKVDEAMLV------------FSKMRQQGLNPDAVTYGAVIGILCKSGRV 392

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            + M  F  +          ++NSLI G C    +E A EL  ++  + +  + + +N +
Sbjct: 393 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 452

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           I +  KEG++ +   L   M   G   D+ T++TL+  +
Sbjct: 453 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 491



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 93/205 (45%), Gaps = 14/205 (6%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C   ++++  A   ++ +KGF  +  +++ L+ G C +    +AM
Sbjct: 83  VTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN--- 274
           ++           +   M   + +P+ F+C I + GLC      E +EL   +       
Sbjct: 143 DI-----------VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGG 191

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
               V  + ++I G  K G    A   ++++  + +  DVV Y+ +I AL K   + K  
Sbjct: 192 SAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAM 251

Query: 335 YLLLSMEENGCALDVDTFNTLMISF 359
            +L SM +NG   +  T+ ++M  +
Sbjct: 252 EVLTSMVKNGVMPNCRTYTSIMHGY 276



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 104/257 (40%), Gaps = 32/257 (12%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL-FDSMARKGFMPD 196
           C+  +L      L  ++++G      T+TPLL G C   + + A+ +    M     MPD
Sbjct: 98  CRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPD 157

Query: 197 VFSYSVLINGYCKNFNVEEAMN-----------------VSREMILNGFKK--------- 230
           VFS ++L+ G C     +EA+                  VS   ++NGF K         
Sbjct: 158 VFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYS 217

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
            ++EM    + P+  T +  I  LCK   + + ME+  ++  +        + S++ G C
Sbjct: 218 TYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYC 277

Query: 291 KFGIFEIASELFNKLSC-----KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
             G  + A     K+         L  D+  Y  L+     +G +   + LL  M  NG 
Sbjct: 278 SSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGI 337

Query: 346 ALDVDTFNTLMISFLQK 362
             D   +N L+ ++ ++
Sbjct: 338 HPDHYVYNILICAYAKQ 354


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 170/361 (47%), Gaps = 24/361 (6%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           +   IRR   P   ++FN +I G C  G +  A  +++ M   G   NV T +TLI G  
Sbjct: 151 YKEMIRRRIEP-TLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYC 209

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G +    K    +     D  GI  PN   +  LIDG CKD+ V     +F EM  +G
Sbjct: 210 KMGKIGKMYKADAILKEMRAD--GIC-PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQG 266

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           +  N +        LC   K+ EA  L + M+   L P I T+  LLNG+C    V  A 
Sbjct: 267 VKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAG 326

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            LFD M ++G  P+V +Y++LI+ YCK+ N+E+A  + R M+  G            V P
Sbjct: 327 ELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKG------------VCP 374

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T N  I GLC+ G +     L   ++  + +  +  +N LI   C  G  + A  L 
Sbjct: 375 DVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLL 434

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +++  K L    + YN +I    KEG ++    L   ME+ G   +V T+N L+  F +K
Sbjct: 435 DEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKK 494

Query: 363 E 363
           +
Sbjct: 495 D 495



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 154/314 (49%), Gaps = 26/314 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTFN LI GFC + N+  A ++  +M   G +PNV T ++LI GL   G +N    L 
Sbjct: 235 NEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALR 294

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------- 135
            +MVN         KPN+  + +L++G CK+++V Q  +LF +M  +GI  N        
Sbjct: 295 DQMVNS------CLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILI 348

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   + +A  L  +M+ +G+ P + TY  L+ G C  G +  A  L   M  K   
Sbjct: 349 DAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLK 408

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D+ +Y++LI+  C    +++A+ +  EM   G K            P   T N  IDG 
Sbjct: 409 ADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLK------------PSQLTYNTMIDGY 456

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G++   + L   +E       V  +N LI+G CK    E A+ L N++  K L+ + 
Sbjct: 457 CKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNR 516

Query: 315 VAYNILIHALGKEG 328
           + Y I+   + ++G
Sbjct: 517 MTYEIVTEEMMEKG 530



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 183/371 (49%), Gaps = 40/371 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +  + L+  +      R   +  K+ + +G + +VT+C+ L++GL + G +     ++
Sbjct: 92  NSIIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVY 151

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM+          +P +  +  +I+GLCK   +++  D+  +MK +G++AN +      
Sbjct: 152 KEMIRRR------IEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLI 205

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                + K  K+ +A+ +L+ M   G+ P   T+  L++G+C    V+ A+ +F  M R+
Sbjct: 206 DGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQ 265

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGFKK------- 230
           G  P+V +Y+ LING C N  V EA  +  +M+              LNGF K       
Sbjct: 266 GVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQA 325

Query: 231 --IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
             +F++M    + P   T NI ID  CK+ ++ +   L+  +        V  +N LI G
Sbjct: 326 GELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAG 385

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C+ G  E A  L +++  K+L AD++ YNILI +L  +G++KK   LL  M   G    
Sbjct: 386 LCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPS 445

Query: 349 VDTFNTLMISF 359
             T+NT++  +
Sbjct: 446 QLTYNTMIDGY 456



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 130/269 (48%), Gaps = 27/269 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A       +  C +P N +T N+L+ GFC    ++ A +L   M   G  PNVTT 
Sbjct: 286 KVNEATALRDQMVNSCLKP-NIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTY 344

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + LI    +  NM     L++ M       G    P+V  Y  LI GLC+   ++  ++L
Sbjct: 345 NILIDAYCKDENMEDAFALYRIM------LGKGVCPDVSTYNCLIAGLCRKGDLEAARNL 398

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM  K + A+ +        LC K ++ +A RLL+ M ++GL P   TY  +++GYC 
Sbjct: 399 VSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCK 458

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G +  A+ L   M + G + +V +Y+VLI G+CK   +E+A         NG   + NE
Sbjct: 459 EGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDA---------NG---LLNE 506

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           M    ++P   T  I  + + + G V ++
Sbjct: 507 MLEKGLIPNRMTYEIVTEEMMEKGFVPDI 535



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 109/233 (46%), Gaps = 26/233 (11%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           GL   + +  PL++G   VG++     ++  M R+   P + S++++ING CK   + +A
Sbjct: 123 GLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKA 182

Query: 217 MNVSREM--------------ILNGFKK------------IFNEMKLCNVVPETFTCNIF 250
            ++  +M              +++G+ K            I  EM+   + P   T NI 
Sbjct: 183 GDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNIL 242

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           IDG CK+ +V   M++F  +     +  V  +NSLI G C  G    A+ L +++    L
Sbjct: 243 IDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCL 302

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             +++ +N L++   K   +K+   L   M + G   +V T+N L+ ++ + E
Sbjct: 303 KPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDE 355



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 19/204 (9%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P+    TPLL+      +    I L  S++   F  +     +L+  Y KN         
Sbjct: 58  PISRVQTPLLSFINYSTQEQTQILL--SVSGDSFCANSIIVDILVWAYAKNLRTR----- 110

Query: 220 SREMILNGFKKIFN-EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
              +    FK+  +  +KL        +CN  + GL K G + ++  ++  +     E  
Sbjct: 111 ---LGFEAFKRASDYGLKL-----SVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPT 162

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA---LGKEGQIKKENY 335
           +  FN +I G CK G    A ++   +  + + A+V+ YN LI     +GK G++ K + 
Sbjct: 163 LISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADA 222

Query: 336 LLLSMEENGCALDVDTFNTLMISF 359
           +L  M  +G   +  TFN L+  F
Sbjct: 223 ILKEMRADGICPNEVTFNILIDGF 246


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 177/368 (48%), Gaps = 37/368 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LIK +   G +  A  +  +M   G +PNV T  T+I  L R G M+  +    E 
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAM----EK 451

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
            N M D G    P+ + Y  LI G C    + + K+L  E+ + G++ + +L        
Sbjct: 452 FNQMIDQG--VAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNL 509

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++++A  + +L +  GL+P    Y+ L++GYCLVGK+  A+ +FD+M   G  P+ 
Sbjct: 510 CKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPND 569

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI-----------------------FNE 234
             Y  L+NGYCK   ++E +++ REM+  G K                         F+E
Sbjct: 570 VVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 629

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    +     T +I + GL KN    E + LF  L   N ++ +   N++I G  +   
Sbjct: 630 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 689

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A +LF  +S   LV  VV Y+I+I  L KEG +++   +  SM+  GC  D    N 
Sbjct: 690 VEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 749

Query: 355 LMISFLQK 362
           ++   L+K
Sbjct: 750 VVRELLKK 757



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 173/382 (45%), Gaps = 37/382 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTL 65
           AL  FG  +R   R ++ +  N L+KGFC      +A   L+ +    GC P+V +   L
Sbjct: 130 ALAFFGQLLRTGLR-VDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSIL 188

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L   G       L + M  G    G +  P+V  Y ++IDG  K+  V++  DLF E
Sbjct: 189 LKSLCDQGKSGQADDLLRMMAEG----GAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKE 244

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M  +GI  + +        LCK   + +A   L  M+ +G+ P  +TY  L+ GY   G+
Sbjct: 245 MVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQ 304

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREM 223
              A+ +F  M R+  +PDV ++++L+   CK   ++EA +V              S  +
Sbjct: 305 WKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 364

Query: 224 ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +LNG+           +F+ M    + P   T N+ I      G + + M +F  +    
Sbjct: 365 MLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHG 424

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            +  V  + ++I   C+ G  + A E FN++  + +  D  AY+ LI      G + K  
Sbjct: 425 VKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 484

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L+  +  NG  LD+  F++++
Sbjct: 485 ELISEIMNNGMHLDIVLFSSII 506



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 161/363 (44%), Gaps = 37/363 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +N++I GF  EG++  A  L K+M   G  P+  T  +++  L +   M+      ++
Sbjct: 220 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQ 279

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MVN      G+  PN + Y +LI G        +   +F EM+ + I  + +        
Sbjct: 280 MVNK-----GVL-PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGS 333

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+ EA  + + M  +G NP +F+Y  +LNGY   G +     LFD M   G  P 
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPV 393

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
           + +++VLI  Y     +++AM +  EM  +G K                       + FN
Sbjct: 394 ICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFN 453

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +M    V P+ +  +  I G C +G +L+  EL   +  +   L + +F+S+I   CK G
Sbjct: 454 QMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLG 513

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A  +F+      L    V Y++L+      G+++K   +  +M   G   +   + 
Sbjct: 514 RVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYG 573

Query: 354 TLM 356
           TL+
Sbjct: 574 TLV 576



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 125/272 (45%), Gaps = 23/272 (8%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANTL--------LCKKTKLVEANRL 149
           ++     L+ G C+ +  D+  D+ +    + G   +          LC + K  +A+ L
Sbjct: 145 DIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 204

Query: 150 LELMMQRGL--NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           L +M + G   +P +  Y  +++G+   G VN A  LF  M ++G  PD  +YS +++  
Sbjct: 205 LRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHAL 264

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK   +++A    R+M+  G            V+P  +T N  I G    G   E + +F
Sbjct: 265 CKARAMDKAEAFLRQMVNKG------------VLPNNWTYNNLIYGYSSTGQWKEAVRVF 312

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +   +    V  FN L+   CK+G  + A ++F+ ++ K    DV +YNI+++    +
Sbjct: 313 KEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           G +     L   M  +G A  + TFN L+ ++
Sbjct: 373 GCLVDMTDLFDLMLGDGIAPVICTFNVLIKAY 404



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 130/280 (46%), Gaps = 25/280 (8%)

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN-----ANTLL---CKKTKLVEA 146
           +  P    Y  L+D   +    +     F ++   G+      AN LL   C+  +  EA
Sbjct: 106 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEA 165

Query: 147 -NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM--PDVFSYSVL 203
            + LL    + G  P +F+Y+ LL   C  GK   A  L   MA  G +  PDV +Y+ +
Sbjct: 166 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTV 225

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I+G+ K  +V +A ++ +EM+  G            + P+  T +  +  LCK    ++ 
Sbjct: 226 IDGFFKEGDVNKACDLFKEMVQRG------------IPPDFVTYSSVVHALCK-ARAMDK 272

Query: 264 MELFPTLEISNCELFVE-IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            E F    ++   L     +N+LI G    G ++ A  +F ++  ++++ DVV +N+L+ 
Sbjct: 273 AEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMG 332

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +L K G+IK+   +  +M   G   DV ++N ++  +  K
Sbjct: 333 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 35/282 (12%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V ++ L+ G+C+ G +  A ++   M + G  PN     TL+ G  + G ++  L L +E
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFRE 594

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+       GI KP+   Y  +IDGL +       K  F EM + GI  N          
Sbjct: 595 MLQ-----KGI-KPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 648

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K     EA  L + +    +   I T   ++ G     +V  A  LF S++R G +P 
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +YS++I    K   VEEA            + +F+ M+     P++   N  +  L K
Sbjct: 709 VVTYSIMITNLIKEGLVEEA------------EDMFSSMQNAGCEPDSRLLNHVVRELLK 756

Query: 257 NGHVL-------EVMELFPTLEISNCELFVEIFNSLIRGCCK 291
              ++       ++ E   +LE     L V++F+S  +G C+
Sbjct: 757 KNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSS--KGTCR 796



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 13/206 (6%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R L+P   TY  L++      +  +A+A F  + R G   D+   + L+ G+C+    +E
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDE 164

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN- 274
           A+++           + +       VP+ F+ +I +  LC  G   +  +L   +     
Sbjct: 165 ALDI-----------LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA 213

Query: 275 -CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            C   V  +N++I G  K G    A +LF ++  + +  D V Y+ ++HAL K   + K 
Sbjct: 214 VCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKA 273

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
              L  M   G   +  T+N L+  +
Sbjct: 274 EAFLRQMVNKGVLPNNWTYNNLIYGY 299


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 178/372 (47%), Gaps = 38/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           NDV F  LI G+   G + +A+  L  KM   GCRP+V T +TLI GL + G M   +  
Sbjct: 343 NDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAV-- 400

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             +MVN M   G    PN+  Y +L+DG CK   +++   +  EM  KG   N +     
Sbjct: 401 --DMVNDMSANGC--TPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVL 456

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  K+ +A  +L  M  +G  P IFT+  L+ G C V +   A+AL+  M   G 
Sbjct: 457 LRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGV 516

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMIL----------NGFKK------------- 230
           + +  +Y+ LI+ + +   ++EA+ +  +M+           NG  K             
Sbjct: 517 IANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALG 576

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F+EM   ++VP   +CN+ I+GLC+ G V   +EL   +        V  +NSLI G C
Sbjct: 577 LFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLC 636

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G    A  LFNKL  + +  D + YN LI    + G       LLL   EN    +  
Sbjct: 637 KMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDV 696

Query: 351 TFNTLMISFLQK 362
           T+  L+ +F+++
Sbjct: 697 TWYILVSNFIKE 708



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 173/342 (50%), Gaps = 23/342 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI        + +A +L+++M   GC P+V T + +I GL R   ++   KL 
Sbjct: 242 NSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLV 301

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----C 138
             M+     F G + PN   YG L++GLC+   VD+ + L  ++        T+L     
Sbjct: 302 DRML-----FRG-FTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYV 355

Query: 139 KKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           K  +L EAN  L + M++ G  P +FT+  L++G C  G +  A+ + + M+  G  P++
Sbjct: 356 KSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNL 415

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ L++G+CK   +EEA  V  EM   GF+   N M            N+ +  LCKN
Sbjct: 416 ITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFE--LNIMGY----------NVLLRALCKN 463

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V + +++   +    C+  +  FN+LI G CK    E A  L+  +    ++A+ V Y
Sbjct: 464 GKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTY 523

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N LIHA  + G I++   L+  M   GC LD  T+N L+ +F
Sbjct: 524 NTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAF 565



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 173/350 (49%), Gaps = 34/350 (9%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R + P ND+T+  L+ G C  G + +A  L+ K+ T    PN      LI G  ++G ++
Sbjct: 307 RGFTP-NDITYGVLMNGLCRVGKVDEAQVLLNKVPT----PNDVHFTILINGYVKSGRLD 361

Query: 77  -LTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
                L+ +M+ NG        +P+VF + +LI GLCK  L+    D+  +M   G   N
Sbjct: 362 EANAFLYDKMIKNGC-------RPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPN 414

Query: 135 -----TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                TLL   CKK +L EA  +L  M  +G    I  Y  LL   C  GKV  A+ +  
Sbjct: 415 LITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLG 474

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M+ KG  PD+F+++ LI G CK    E+A+ + R+M+L+G            V+  T T
Sbjct: 475 EMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDG------------VIANTVT 522

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  I    + G + E ++L   +    C L    +N LI+  CK G  E A  LF+++ 
Sbjct: 523 YNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMV 582

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            K+LV   ++ N+LI+ L + G++     LL  M   G A DV T+N+L+
Sbjct: 583 RKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLI 632



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 141/287 (49%), Gaps = 28/287 (9%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P V+ +G ++  LC    VD    L  +M   G   N++        L K+ ++ EA +L
Sbjct: 206 PTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKL 265

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           LE M   G  P + T+  ++ G C + +++    L D M  +GF P+  +Y VL+NG C+
Sbjct: 266 LEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCR 325

Query: 210 NFNVEEAM----------NVSREMILNGFKK----------IFNEMKLCNVVPETFTCNI 249
              V+EA           +V   +++NG+ K          ++++M      P+ FT N 
Sbjct: 326 VGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNT 385

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            I GLCK G +   +++   +  + C   +  + +L+ G CK    E A  + N++S K 
Sbjct: 386 LIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKG 445

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +++ YN+L+ AL K G++ K   +L  M + GC  D+ TFNTL+
Sbjct: 446 FELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLI 492



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 26/245 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN + +N L++  C  G +  A  ++ +M+  GC+P++ T +TLI GL +       L L
Sbjct: 448 LNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALAL 507

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           +++M+       G+   N   Y +LI    +   + +   L  +M  +G     I  N L
Sbjct: 508 YRDML-----LDGVIA-NTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGL 561

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   CK     +A  L + M+++ L P   +   L+NG C VGKV  A+ L   M  +G 
Sbjct: 562 IKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGL 621

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PDV +Y+ LING CK  N+ EA N            +FN+++   + P+  T N  I  
Sbjct: 622 APDVVTYNSLINGLCKMGNIREAFN------------LFNKLQAEGIQPDAITYNTLICW 669

Query: 254 LCKNG 258
            C+ G
Sbjct: 670 HCRAG 674



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 125/290 (43%), Gaps = 32/290 (11%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  AL   G    +  +P +  TFN+LI G C      DA  L + M   G   N  T 
Sbjct: 465 KVPKALDMLGEMSDKGCKP-DIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTY 523

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI    R G +   LKL  +M+     F G     +  Y  LI   CK    ++   L
Sbjct: 524 NTLIHAFLRGGAIQEALKLVNDML-----FRGCPLDEI-TYNGLIKAFCKLGATEKALGL 577

Query: 123 FMEMKDK-----GINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EM  K      I+ N L   LC+  K+  A  LL  M+ RGL P + TY  L+NG C 
Sbjct: 578 FDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCK 637

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           +G +  A  LF+ +  +G  PD  +Y+ LI  +C+    ++A      ++L G +  F  
Sbjct: 638 MGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAY----LLLLRGVENAF-- 691

Query: 235 MKLCNVVPETFTCNIFIDGLCK-----NGHVLEVMELFPTLEISNCELFV 279
                 +P   T  I +    K     NG      ++ P++ I    +F+
Sbjct: 692 ------IPNDVTWYILVSNFIKEIGKENGISFGTAKVIPSICIQVQNIFL 735



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 18/220 (8%)

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           V AN   E M+ +G+ P ++T+  ++   C+V +V+ A +L   M + G +P+   Y  L
Sbjct: 191 VAANVFYE-MLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTL 249

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I+   K   V EA+ +  EM L G             +P+  T N  I GLC+   + E 
Sbjct: 250 IHALSKRDRVNEALKLLEEMFLMG------------CLPDVDTFNDVIYGLCRLNRIHEG 297

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
            +L   +           +  L+ G C+ G  + A  L NK+   N     V + ILI+ 
Sbjct: 298 AKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPN----DVHFTILING 353

Query: 324 LGKEGQIKKEN-YLLLSMEENGCALDVDTFNTLMISFLQK 362
             K G++ + N +L   M +NGC  DV TFNTL+    +K
Sbjct: 354 YVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKK 393


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 176/384 (45%), Gaps = 60/384 (15%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL++ ++ SLI G C  G  RDA QL++KM     RPN+ T  T+I GL +   +   L+
Sbjct: 157 PLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALR 216

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L   +V   G        +V  Y SLI G C      +   L   M    IN +      
Sbjct: 217 LFS-LVTSRGIL-----VDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNI 270

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK+ ++VEA  +  +MM+RG  P I TY  L+ G+CL   V+ A  LF+ M ++G
Sbjct: 271 LVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRG 330

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PDV +Y+VLINGYCK   V+EAM             +F E++  N+VP   T N  ID
Sbjct: 331 LEPDVLNYNVLINGYCKIDMVDEAM------------VLFKEIRCKNLVPNLATYNSLID 378

Query: 253 GLCKNGHVLEVMELF---------PTLEISNC-----------ELFVEIFNSLIRGC--- 289
           GLCK G +  V EL          P +   N            E  + +F  +++G    
Sbjct: 379 GLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQGIWPD 438

Query: 290 -----------CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
                      CK    +IA E    L       +V  Y I+I+AL K+    +   LL 
Sbjct: 439 FYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLS 498

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            M++N C  D  TF T++ +  ++
Sbjct: 499 KMDDNDCPPDAVTFETIIGALQER 522



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 163/353 (46%), Gaps = 46/353 (13%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A    G+ ++  ++P N VTFN+LI GFC+ G +  A      +   G   +  +  +LI
Sbjct: 109 AFSLLGTILKMGFQP-NMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLI 167

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G     L+L Q+M   +       +PN+  Y ++IDGLCKDRL+          
Sbjct: 168 NGLCKNGQTRDALQLLQKMEEDL------VRPNLITYSTVIDGLCKDRLI---------- 211

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                             +A RL  L+  RG+   +  Y  L++G C VG+   A  L  
Sbjct: 212 -----------------ADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLT 254

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M R    PD +++++L++  CK   + EA  V   M+  G K            P+  T
Sbjct: 255 MMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEK------------PDIVT 302

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  ++G C + +V E  ELF  +     E  V  +N LI G CK  + + A  LF ++ 
Sbjct: 303 YNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIR 362

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           CKNLV ++  YN LI  L K G++     L+  M + G + D+ T+N  + +F
Sbjct: 363 CKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAF 415



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 20/270 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLL----CKKTKLVEANRL 149
           P +F +  L+  + +         LF ++  KGI  +    T+L    C +  L  A  L
Sbjct: 53  PPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSL 112

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +++ G  P + T+  L+NG+C+ G V+ A+A    +  KG+  D FSY  LING CK
Sbjct: 113 LGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCK 172

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           N    +A+ + ++M          E  L  V P   T +  IDGLCK+  + + + LF  
Sbjct: 173 NGQTRDALQLLQKM----------EEDL--VRPNLITYSTVIDGLCKDRLIADALRLFSL 220

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +      + V  +NSLI GCC  G +  A+ L   +   N+  D   +NIL+ AL KEG+
Sbjct: 221 VTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGR 280

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           I +   +   M + G   D+ T+N LM  F
Sbjct: 281 IVEAQGVFAVMMKRGEKPDIVTYNALMEGF 310


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 163/336 (48%), Gaps = 27/336 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A   F + +       + V+++ LI GFC    +  A +L K+M    C PNVTT 
Sbjct: 136 KVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTY 195

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +  + GL R G +     +++EM++          P+V  Y +LI G    R  DQ  +L
Sbjct: 196 NAFLNGLMRKGRIADAQGVYEEMISAG------CSPDVITYSTLIHGFSLARKHDQAHEL 249

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F  M  +G   N +        LCK++K  EA+ L   M++RG +P   TYT LL G+C 
Sbjct: 250 FEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCN 309

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           VGK+  A+ +FD M  KG  PDV +Y+ L+ G+ +     EA            +++F  
Sbjct: 310 VGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEA------------RQLFQV 357

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-CELFVEIFNSLIRGCCKFG 293
           M      P+T + NI IDGL K   + + +E+F  +E  + C   +  +NSLI G C   
Sbjct: 358 MVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQ 417

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
               A ++F ++    L  D  A+N+L+ A+   G 
Sbjct: 418 RLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAGH 453



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 155/343 (45%), Gaps = 47/343 (13%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT---TCDTLITGLRRTGNMNL 77
           PLN+V + + + G C  G I  A +  + M             TC ++I  L + G ++ 
Sbjct: 8   PLNNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDS 67

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137
            L L + M+         Y P++  +  LI+ LCK   + + ++ F++  ++ I+     
Sbjct: 68  ALSLLETMIKRG------YCPDMATHSMLINELCKADKIQEAQE-FLQGMNRTISTRASS 120

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM-ARKGFMPD 196
           C                        F+Y  LLN  C   KV+ A A+F +M + +  +PD
Sbjct: 121 C------------------------FSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPD 156

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V SYS+LI+G+CK   ++E         L   +K++ +M   N VP   T N F++GL +
Sbjct: 157 VVSYSILIDGFCK---IDE---------LGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMR 204

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + +   ++  +  + C   V  +++LI G       + A ELF  +  +    + V 
Sbjct: 205 KGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVT 264

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           YN L+H L KE +  + + L   M E GC  D  T+ TL+  F
Sbjct: 265 YNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGF 307



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 174/367 (47%), Gaps = 33/367 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKM-ATFGCRPNVTT 61
           +V  AL    + I+R Y P +  T + LI   C    I++A + ++ M  T   R   ++
Sbjct: 64  RVDSALSLLETMIKRGYCP-DMATHSMLINELCKADKIQEAQEFLQGMNRTISTR--ASS 120

Query: 62  C---DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ 118
           C   ++L+  L +   ++    +   MV+          P+V  Y  LIDG CK   + +
Sbjct: 121 CFSYNSLLNSLCKAKKVHQAFAIFSTMVSERS-----VVPDVVSYSILIDGFCKIDELGR 175

Query: 119 TKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
            + L+ +M D     N          L +K ++ +A  + E M+  G +P + TY+ L++
Sbjct: 176 AEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIH 235

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
           G+ L  K + A  LF++M  +G  P+  +Y+ L++G CK    +EA  + R+M+  G   
Sbjct: 236 GFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG--- 292

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
                  C+  P+  T    + G C  G + + +E+F  +     +  V  +N L++G  
Sbjct: 293 -------CD--PDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFF 343

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN-GCALDV 349
           + G    A +LF  +  +    D V++NI+I  L K  ++     +   ME++ GC+ D+
Sbjct: 344 RAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDL 403

Query: 350 DTFNTLM 356
            T+N+L+
Sbjct: 404 VTYNSLI 410



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 149/346 (43%), Gaps = 26/346 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T +S+I+  C  G +  A  L++ M   G  P++ T   LI  L +   +       QE 
Sbjct: 51  TCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEA----QEF 106

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTL-------- 136
           + GM         + F Y SL++ LCK + V Q   +F  M  ++ +  + +        
Sbjct: 107 LQGMNRTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDG 166

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK  +L  A +L + M+     P + TY   LNG    G++  A  +++ M   G  PD
Sbjct: 167 FCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPD 226

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +YS LI+G+      ++A  +   MI  G +            P   T N  + GLCK
Sbjct: 227 VITYSTLIHGFSLARKHDQAHELFEAMISRGCR------------PNAVTYNCLLHGLCK 274

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
                E  ELF  +    C+     + +L+ G C  G  E A E+F+++  K    DVVA
Sbjct: 275 ESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVA 334

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           YN L+    + G+  +   L   M    C  D  + N +MI  L K
Sbjct: 335 YNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHN-IMIDGLSK 379


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 180/367 (49%), Gaps = 28/367 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S+V+ A       +   + P ND T+NS+I G+C +G + DA++++K     G +P+  T
Sbjct: 379 SRVVEAEECLHKMVNGGFEP-NDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFT 437

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             +L+ G  + G+ +  + + ++   G+G   G+ +P++  Y +LI GLC+  L+     
Sbjct: 438 YCSLVNGFCQDGDPDQAMAVFKD---GLGK--GL-RPSIIVYNTLIKGLCQQGLILPALQ 491

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  EM +KG   +          LCK   L +AN L+   + +G  P IFTY  L++GYC
Sbjct: 492 LMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYC 551

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
              K++ AI L + M  +G  PDV +Y+ L+NG CK    EE M + + M   G      
Sbjct: 552 RQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKG------ 605

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P   T N  I+ LC +  V E ++L   ++       V  F +LI G CK G
Sbjct: 606 ------CAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVG 659

Query: 294 IFEIASELFNKLSCKNLVADVVA-YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             + A  LF  +  +  V+   A YNI+I A  ++  +K    L   M++NGC  D  T+
Sbjct: 660 DLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTY 719

Query: 353 NTLMISF 359
             L+  F
Sbjct: 720 RVLIDGF 726



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 190/425 (44%), Gaps = 69/425 (16%)

Query: 4   VLGALMAFGSF--IRRCYRPLND-------VTFNSLIKGFCMEGNIRDASQLVKKMATFG 54
           ++  L+ FG F    + Y  + D        T+   IK FC  G    A +L++ M   G
Sbjct: 196 IMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLG 255

Query: 55  CRPNVTTCDTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGIYK-- 97
           C  N     T++TG    G+ +   +L  EM               V+ +   G + +  
Sbjct: 256 CFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESE 315

Query: 98  ------------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                       PN+F +   I GLCK+  +D+   L   +  +G+  + +        L
Sbjct: 316 RLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGL 375

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+K+++VEA   L  M+  G  P  FTY  +++GYC  G V  A  +      KGF PD 
Sbjct: 376 CRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDE 435

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNE 234
           F+Y  L+NG+C++ + ++AM V ++ +  G +                       ++ NE
Sbjct: 436 FTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNE 495

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M      P+ +T N+ I+GLCK G + +   L        C   +  +N+L+ G C+   
Sbjct: 496 MAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLK 555

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A EL N++  + +  DV+ YN L++ L K  + ++   +  +M E GCA ++ T+NT
Sbjct: 556 LDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNT 615

Query: 355 LMISF 359
           ++ S 
Sbjct: 616 IIESL 620



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 172/364 (47%), Gaps = 27/364 (7%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           VL +   F   ++R   P N  TFN  I+G C EG++  A +L+  ++  G RP+V T +
Sbjct: 311 VLESERLFDKVLKRGVCP-NLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYN 369

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           T+I GL R   +    +   +MVNG       ++PN F Y S+IDG CK  +V     + 
Sbjct: 370 TVICGLCRKSRVVEAEECLHKMVNGG------FEPNDFTYNSIIDGYCKKGMVVDANRIL 423

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            +   KG   +           C+     +A  + +  + +GL P I  Y  L+ G C  
Sbjct: 424 KDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQ 483

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G +  A+ L + MA KG  PD+++Y+++ING CK   + +A ++  + I  G        
Sbjct: 484 GLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKG-------- 535

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                +P+ FT N  +DG C+   +   +EL   +        V  +N+L+ G CK    
Sbjct: 536 ----CIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKS 591

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           E   E+F  ++ K    +++ YN +I +L    ++ +   LL  M+  G   DV +F TL
Sbjct: 592 EEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTL 651

Query: 356 MISF 359
           +  F
Sbjct: 652 ITGF 655



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 183/418 (43%), Gaps = 98/418 (23%)

Query: 28  NSLIKGFCME--------GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           N+L++G  +E        G I++A    ++M  F C P+V + + ++  L   G  N   
Sbjct: 151 NTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAH 210

Query: 80  KLHQEMVNG------------MGDFGGIYKP-----------------NVFCYGSLIDGL 110
           K++  M +             +  F    +P                 N   Y +++ G 
Sbjct: 211 KVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGF 270

Query: 111 CKDRLVDQTKDLFMEMKD-----------KGINANTLLCKKTKLVEANRLLELMMQRGLN 159
            +    D+ ++LF EM +           K ++A   LCKK  ++E+ RL + +++RG+ 
Sbjct: 271 YEFGDNDRARELFDEMLECCLCPDVTTFNKLVHA---LCKKGFVLESERLFDKVLKRGVC 327

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P +FT+   + G C  G ++ A+ L   ++R+G  PDV +Y+ +I G C+   V EA   
Sbjct: 328 PNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEEC 387

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE--------VMELFPTLE 271
             +M+  GF+            P  FT N  IDG CK G V++        V + F   E
Sbjct: 388 LHKMVNGGFE------------PNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDE 435

Query: 272 ISNCELF---------------------------VEIFNSLIRGCCKFGIFEIASELFNK 304
            + C L                            + ++N+LI+G C+ G+   A +L N+
Sbjct: 436 FTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNE 495

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           ++ K    D+  YN++I+ L K G +   N+L+      GC  D+ T+NTL+  + ++
Sbjct: 496 MAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQ 553



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 154/347 (44%), Gaps = 28/347 (8%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           ++P ++ T+ SL+ GFC +G+   A  + K     G RP++   +TLI GL + G +   
Sbjct: 431 FKP-DEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPA 489

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INA 133
           L+L  EM           KP+++ Y  +I+GLCK   +     L  +   KG        
Sbjct: 490 LQLMNEMAEKGC------KPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTY 543

Query: 134 NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           NTL+   C++ KL  A  L+  M  +G+ P + TY  LLNG C   K    + +F +M  
Sbjct: 544 NTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTE 603

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           KG  P++ +Y+ +I   C +  V EA++            +  EMK   + P+  +    
Sbjct: 604 KGCAPNIITYNTIIESLCNSKKVNEAVD------------LLGEMKSKGLTPDVVSFGTL 651

Query: 251 IDGLCKNGHVLEVMELFPTLEIS-NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           I G CK G +     LF  +E   +       +N +I    +    ++A  LF+++    
Sbjct: 652 ITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNG 711

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              D   Y +LI    K G + +    LL   E G    + TF  ++
Sbjct: 712 CDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVL 758



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 132/301 (43%), Gaps = 36/301 (11%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK---------GINANTLLCKKTKLVEA 146
           +K  +F Y S++  L      ++ ++L  EM+            + A     +K K+ EA
Sbjct: 115 FKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKIQEA 174

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
               E M     +P +++Y  ++N     G  N A  ++  M  K    DV++Y++ I  
Sbjct: 175 VDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKS 234

Query: 207 YCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMKLCNVVPE 243
           +C+      A+ + R M              ++ GF         +++F+EM  C + P+
Sbjct: 235 FCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPD 294

Query: 244 TFTCNIFIDGLCKNGHVLEVMELF-PTLEISNCE-LFVEIFNSLIRGCCKFGIFEIASEL 301
             T N  +  LCK G VLE   LF   L+   C  LF   FN  I+G CK G  + A  L
Sbjct: 295 VTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFT--FNIFIQGLCKEGSLDRAVRL 352

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
              +S + L  DVV YN +I  L ++ ++ +    L  M   G   +  T+N+++  + +
Sbjct: 353 LGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCK 412

Query: 362 K 362
           K
Sbjct: 413 K 413



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 116/279 (41%), Gaps = 65/279 (23%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N+L+ G+C +  +  A +LV +M + G  P+V T +TL+ GL +T      +    E+
Sbjct: 542 TYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVM----EI 597

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
              M + G    PN+  Y ++I+ LC  + V++  DL  EMK KG+  +        T  
Sbjct: 598 FKAMTEKGC--APNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGF 655

Query: 138 CK------------------------------------KTKLVEANRLLELMMQRGLNPV 161
           CK                                    +  +  A RL   M + G +P 
Sbjct: 656 CKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPD 715

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
            +TY  L++G+C  G VN           KGF+P + ++  ++N  C    V+EA+ +  
Sbjct: 716 NYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIH 775

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
            M+              ++VP+T       D   K GH+
Sbjct: 776 LMVQK------------DIVPDTVNTIFEAD---KKGHI 799


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 178/391 (45%), Gaps = 62/391 (15%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R+  +P N  T+NS+I   C  G + +A Q+++ M      P+     TLI+G  ++GN+
Sbjct: 315 RKGLKP-NQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNV 373

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           ++  KL  EM            P+   Y S+I GLC+   V + + LF EM  KG+  + 
Sbjct: 374 SVEYKLFDEMKRKK------IVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDE 427

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +         CK  ++ EA  L   M+++GL P + TYT L++G C  G+V++A  L   
Sbjct: 428 VTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHE 487

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M+ KG  P+V +Y+ LING CK  N+E+A+ +  EM L GF             P+T T 
Sbjct: 488 MSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGF------------FPDTITY 535

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS-------- 299
              +D  CK G + +  EL   +     +  +  FN L+ G C  G+ E           
Sbjct: 536 TTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLD 595

Query: 300 ---------------------------ELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                                      E++  +  + +V D   YNILI    K   +K+
Sbjct: 596 KGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKE 655

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             +L   M E G +L   ++N+L+  F +++
Sbjct: 656 AWFLHKEMVEKGFSLTAASYNSLIKGFYKRK 686



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 165/334 (49%), Gaps = 27/334 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV+ A   F   + +  +P ++VT+ +LI G+C  G +++A  L  +M   G  PNV T 
Sbjct: 407 KVVEARKLFSEMLSKGLKP-DEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTY 465

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             L+ GL + G +++      E+++ M + G   +PNV  Y +LI+GLCK   ++Q   L
Sbjct: 466 TALVDGLCKCGEVDIA----NELLHEMSEKG--LQPNVCTYNALINGLCKVGNIEQAVKL 519

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM   G   +T+         CK  ++ +A+ LL +M+ +GL P I T+  L+NG+C+
Sbjct: 520 MEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCM 579

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G +     L   M  KG MP+  +++ L+  YC   N+   + + + M   G       
Sbjct: 580 SGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQG------- 632

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                VVP+T T NI I G CK  ++ E   L   +      L    +NSLI+G  K   
Sbjct: 633 -----VVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKK 687

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
           FE A +LF ++     +A+   Y+I +    +EG
Sbjct: 688 FEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEG 721



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 162/346 (46%), Gaps = 26/346 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N V++N ++   C  G +++A  L+ +M   G  P+V +   ++ G  +   +   LKL
Sbjct: 250 WNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKL 309

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--- 138
            +E+        G+ KPN + Y S+I  LCK   V + + +   MK++ I  + ++    
Sbjct: 310 MEELQRK-----GL-KPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTL 363

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K   +    +L + M ++ + P   TYT +++G C  GKV  A  LF  M  KG 
Sbjct: 364 ISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGL 423

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD  +Y+ LI+GYCK   ++EA ++  +M+  G            + P   T    +DG
Sbjct: 424 KPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKG------------LTPNVVTYTALVDG 471

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G V    EL   +     +  V  +N+LI G CK G  E A +L  ++       D
Sbjct: 472 LCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPD 531

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + Y  ++ A  K G++ K + LL  M + G    + TFN LM  F
Sbjct: 532 TITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGF 577



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 33/200 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN L+ GFCM G + D  +L+K M   G  PN TT ++L+       NM  T+++++ 
Sbjct: 568 VTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYK- 626

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
              GM   G +  P+   Y  LI G CK R                            + 
Sbjct: 627 ---GMHAQGVV--PDTNTYNILIKGHCKAR---------------------------NMK 654

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           EA  L + M+++G +    +Y  L+ G+    K   A  LF+ M   GF+ +   Y + +
Sbjct: 655 EAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFV 714

Query: 205 NGYCKNFNVEEAMNVSREMI 224
           +   +  N E  + +  E I
Sbjct: 715 DVNYEEGNWENTLELCDEAI 734



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 12/184 (6%)

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +  A  +F   +  G   +  SY+++++  C+   V+EA ++  +M   G          
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRG---------- 282

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
              VP+  + ++ +DG C+   + +V++L   L+    +     +NS+I   CK G    
Sbjct: 283 --NVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVE 340

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A ++   +  + +  D V Y  LI   GK G +  E  L   M+      D  T+ +++ 
Sbjct: 341 AEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIH 400

Query: 358 SFLQ 361
              Q
Sbjct: 401 GLCQ 404



 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 13/123 (10%)

Query: 248 NIFIDGLCKNGHVLEVMELFPTL-------EISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           ++F   L + G +LE  +LF  L        + +C LF      L R    F     A  
Sbjct: 185 DVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLF------LARLSNSFDGIRTAFR 238

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           +F + S   +  + V+YNI++H L + G++K+ + LL+ ME  G   DV +++ ++  + 
Sbjct: 239 VFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYC 298

Query: 361 QKE 363
           Q E
Sbjct: 299 QVE 301


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 175/343 (51%), Gaps = 26/343 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFNS++ G C  G +  A ++  +M   G  P+V + +TL++G  + G ++ +L + 
Sbjct: 222 NLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVF 281

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM        G+  P+V  + SLI   CK   ++Q   L  +M+++G+  N +      
Sbjct: 282 SEMTQ-----RGLV-PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 335

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CKK  L +A   +E M + G+ P +  Y  L+NGYC +G++++A  L   M  K   
Sbjct: 336 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVK 395

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV +YS +I+GYCK  N++ A  ++++M+  G            V+P+  T +  I GL
Sbjct: 396 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG------------VLPDAITYSSLIRGL 443

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+   + +  ELF  +     +     + +LI G CK G  E A  L +++  K ++ DV
Sbjct: 444 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDV 503

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           V Y++LI+ L K  + K+ + LL  +       D   ++ LM+
Sbjct: 504 VTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALML 546



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 172/354 (48%), Gaps = 26/354 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
             S +R    P N  T+N L++  C  G + +A  +V  M   GC PN  T +TL+    
Sbjct: 140 LSSMLRHGVAP-NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFC 198

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R G ++      + +V+ M + G   KPN+  + S+++GLCK   ++  + +F EM  +G
Sbjct: 199 RAGELDGA----ERVVSLMREEGNA-KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREG 253

Query: 131 -----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                ++ NTLL   CK   L E+  +   M QRGL P + T+T L++  C  G +  A+
Sbjct: 254 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 313

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
           AL   M  +G   +  +++ LI+G+CK   +++A+                EM+ C + P
Sbjct: 314 ALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA------------VEEMRKCGIQP 361

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
                N  I+G CK G +    EL   +E    +  V  ++++I G CK G  + A +L 
Sbjct: 362 SVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLN 421

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            K+  K ++ D + Y+ LI  L +E ++     L  +M + G   D  T+ TL+
Sbjct: 422 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLI 475



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 162/322 (50%), Gaps = 21/322 (6%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N+VTF +LI GFC +G + DA   V++M   G +P+V   + LI G  + G M+L  +L
Sbjct: 326 MNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAREL 385

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM           KP+V  Y ++I G CK   +D    L  +M  KG+  + +     
Sbjct: 386 IREME------AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSL 439

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ +L +A  L E M+Q G+ P  FTYT L++G+C  G V  A++L D M RKG 
Sbjct: 440 IRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 499

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNV-----SREMILNGFKKIFNEMKLCNVVPETFTCN 248
           +PDV +YSVLING  K+   +EA  +       + + +  K  ++ + LC    E  +  
Sbjct: 500 LPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIK--YDALMLCCSKAEFKSVV 557

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             + G C  G + E  +++ ++   N +L   +++ LI G C+ G    A     ++   
Sbjct: 558 ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 617

Query: 309 NLVADVVAYNILIHALGKEGQI 330
               +  +   L+  L +EG +
Sbjct: 618 GFSPNSTSTISLVRGLFEEGMV 639



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 157/342 (45%), Gaps = 28/342 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F++LI+ +        A+  +   A+ G  P+V   + ++  L      + +L   +  +
Sbjct: 86  FDALIRSYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLLALS-----DASLPSARRFL 140

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
           + M   G    PNV+ Y  L+  LC    +++   +  +M+  G     +  NTL+   C
Sbjct: 141 SSMLRHG--VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFC 198

Query: 139 KKTKLVEANRLLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           +  +L  A R++ LM + G   P + T+  ++NG C  G++  A  +FD M R+G  PDV
Sbjct: 199 RAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV 258

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY+ L++GYCK   + E++ V            F+EM    +VP+  T    I   CK 
Sbjct: 259 VSYNTLLSGYCKVGCLHESLAV------------FSEMTQRGLVPDVVTFTSLIHATCKA 306

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G++ + + L   +      +    F +LI G CK G  + A     ++    +   VV Y
Sbjct: 307 GNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCY 366

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N LI+   K G++     L+  ME      DV T++T++  +
Sbjct: 367 NALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGY 408



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 11/231 (4%)

Query: 132 NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           NA  L      L  A R L  M++ G+ P ++TY  L+   C  G++  A+ +   M   
Sbjct: 122 NAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGA 181

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+  +Y+ L+  +C+   ++ A  V   M   G           N  P   T N  +
Sbjct: 182 GCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG-----------NAKPNLVTFNSMV 230

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +GLCK G +    ++F  +        V  +N+L+ G CK G    +  +F++++ + LV
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            DVV +  LIHA  K G +++   L+  M E G  ++  TF  L+  F +K
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKK 341


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 175/343 (51%), Gaps = 26/343 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFNS++ G C  G +  A ++  +M   G  P+V + +TL++G  + G ++ +L + 
Sbjct: 222 NLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVF 281

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM        G+  P+V  + SLI   CK   ++Q   L  +M+++G+  N +      
Sbjct: 282 SEMTQ-----RGLV-PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 335

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CKK  L +A   +E M + G+ P +  Y  L+NGYC +G++++A  L   M  K   
Sbjct: 336 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVK 395

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV +YS +I+GYCK  N++ A  ++++M+  G            V+P+  T +  I GL
Sbjct: 396 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG------------VLPDAITYSSLIRGL 443

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+   + +  ELF  +     +     + +LI G CK G  E A  L +++  K ++ DV
Sbjct: 444 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDV 503

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           V Y++LI+ L K  + K+ + LL  +       D   ++ LM+
Sbjct: 504 VTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALML 546



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 172/354 (48%), Gaps = 26/354 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
             S +R    P N  T+N L++  C  G + +A  +V  M   GC PN  T +TL+    
Sbjct: 140 LSSMLRHGVAP-NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFC 198

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R G ++      + +V+ M + G   KPN+  + S+++GLCK   ++  + +F EM  +G
Sbjct: 199 RAGELDGA----ERVVSLMREEGNA-KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREG 253

Query: 131 -----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                ++ NTLL   CK   L E+  +   M QRGL P + T+T L++  C  G +  A+
Sbjct: 254 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 313

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
           AL   M  +G   +  +++ LI+G+CK   +++A+                EM+ C + P
Sbjct: 314 ALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA------------VEEMRKCGIQP 361

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
                N  I+G CK G +    EL   +E    +  V  ++++I G CK G  + A +L 
Sbjct: 362 SVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLN 421

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            K+  K ++ D + Y+ LI  L +E ++     L  +M + G   D  T+ TL+
Sbjct: 422 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLI 475



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 162/322 (50%), Gaps = 21/322 (6%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N+VTF +LI GFC +G + DA   V++M   G +P+V   + LI G  + G M+L  +L
Sbjct: 326 MNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAREL 385

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM           KP+V  Y ++I G CK   +D    L  +M  KG+  + +     
Sbjct: 386 IREME------AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSL 439

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ +L +A  L E M+Q G+ P  FTYT L++G+C  G V  A++L D M RKG 
Sbjct: 440 IRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 499

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNV-----SREMILNGFKKIFNEMKLCNVVPETFTCN 248
           +PDV +YSVLING  K+   +EA  +       + + +  K  ++ + LC    E  +  
Sbjct: 500 LPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIK--YDALMLCCSKAEFKSVV 557

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             + G C  G + E  +++ ++   N +L   +++ LI G C+ G    A     ++   
Sbjct: 558 ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 617

Query: 309 NLVADVVAYNILIHALGKEGQI 330
               +  +   L+  L +EG +
Sbjct: 618 GFSPNSTSTISLVRGLFEEGMV 639



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 169/349 (48%), Gaps = 42/349 (12%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           +L  F    +R   P + VTF SLI   C  GN+  A  LV +M   G R N  T   LI
Sbjct: 277 SLAVFSEMTQRGLVP-DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 335

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G ++  L   +EM        GI +P+V CY +LI+G CK   +D  ++L  EM
Sbjct: 336 DGFCKKGFLDDALLAVEEMRKC-----GI-QPSVVCYNALINGYCKLGRMDLARELIREM 389

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           + K +  + +         CK   L  A +L + M+++G+ P   TY+ L+ G C   ++
Sbjct: 390 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           N A  LF++M + G  PD F+Y+ LI+G+CK  NVE+A+++  EMI  G           
Sbjct: 450 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG----------- 498

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMEL---------------FPTLEISNCELFVEIFN 283
            V+P+  T ++ I+GL K+    E   L               +  L +   +   +   
Sbjct: 499 -VLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVV 557

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           +L++G C  G+ + A +++  +  +N   D   Y+ILIH   + G ++K
Sbjct: 558 ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRK 606



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 157/342 (45%), Gaps = 28/342 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F++LI+ +        A+  +   A+ G  P+V   + ++  L      + +L   +  +
Sbjct: 86  FDALIRSYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLLALS-----DASLPSARRFL 140

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
           + M   G    PNV+ Y  L+  LC    +++   +  +M+  G     +  NTL+   C
Sbjct: 141 SSMLRHG--VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFC 198

Query: 139 KKTKLVEANRLLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           +  +L  A R++ LM + G   P + T+  ++NG C  G++  A  +FD M R+G  PDV
Sbjct: 199 RAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV 258

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY+ L++GYCK   + E++ V            F+EM    +VP+  T    I   CK 
Sbjct: 259 VSYNTLLSGYCKVGCLHESLAV------------FSEMTQRGLVPDVVTFTSLIHATCKA 306

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G++ + + L   +      +    F +LI G CK G  + A     ++    +   VV Y
Sbjct: 307 GNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCY 366

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N LI+   K G++     L+  ME      DV T++T++  +
Sbjct: 367 NALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGY 408



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 11/231 (4%)

Query: 132 NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           NA  L      L  A R L  M++ G+ P ++TY  L+   C  G++  A+ +   M   
Sbjct: 122 NAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGA 181

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+  +Y+ L+  +C+   ++ A  V   M   G           N  P   T N  +
Sbjct: 182 GCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG-----------NAKPNLVTFNSMV 230

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +GLCK G +    ++F  +        V  +N+L+ G CK G    +  +F++++ + LV
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            DVV +  LIHA  K G +++   L+  M E G  ++  TF  L+  F +K
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKK 341


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 122/462 (26%), Positives = 195/462 (42%), Gaps = 108/462 (23%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  AL  FG   +    P + VTF +L+ G C+E  + +A     +M    CRPNV T
Sbjct: 128 SKLPFALSTFGKITKLGLHP-DVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVT 186

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGIYK--------- 97
             TL+ GL R G +   + L   M               V+GM   G             
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME 246

Query: 98  ------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------------------- 131
                 PNV  Y ++ID LCKD      ++LF EM++KGI                    
Sbjct: 247 EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRW 306

Query: 132 -NANTLL----------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            +A  LL                       K+ K  EA  L + M+ RG+ P   TY+ +
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI---- 224
           ++G+C   +++ A  +F  MA KG  P++ +++ LI+GYC    +++ M +  EM     
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 225 -------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                              LN    +  EM    + P+  TC+  +DGLC NG + + +E
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 266 LFPTLEISNCEL-----------FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           +F  ++ S  +L            V+ +N LI G    G F  A EL+ ++  + +V D 
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + Y+ +I  L K+ ++ +   +  SM     + +V TF TL+
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 588



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 171/380 (45%), Gaps = 48/380 (12%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NS+I GFC  G   DA QL+++M      P+V T + LI    + G      +L+ EM
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           +       GI  PN   Y S+IDG CK   +D  + +F  M  KG     I  NTL+   
Sbjct: 352 LPR-----GII-PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   ++ +   LL  M + GL     TY  L++G+ LVG +N A+ L   M   G  PD+
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDI 465

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM-------------------------ILNGF---- 228
            +   L++G C N  +++A+ + + M                         +++G     
Sbjct: 466 VTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG 525

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                ++++ EM    +VP+T T +  IDGLCK   + E  ++F ++   +    V  F 
Sbjct: 526 KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFT 585

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LI G CK G  +   ELF ++  + +VA+ + Y  LI    K G I     +   M  +
Sbjct: 586 TLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISS 645

Query: 344 GCALDVDTFNTLMISFLQKE 363
           G   D  T   ++     KE
Sbjct: 646 GVYPDTITIRNMLTGLWSKE 665



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 139/265 (52%), Gaps = 27/265 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+N+LI GF + G++  A  L+++M + G  P++ TCDTL+ GL   G +   L++ 
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 83  QEMVNGMGD------FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           + M     D      F G+ +P+V  Y  LI GL  +    + ++L+ EM  +GI  +T+
Sbjct: 489 KVMQKSKKDLDASHPFNGV-EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LCK+++L EA ++ + M  +  +P + T+T L+NGYC  G+V+  + LF  M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            R+G + +  +Y  LI G+ K  N+  A+++ +EMI +G            V P+T T  
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG------------VYPDTITIR 655

Query: 249 IFIDGLCKNGHVLEVMELFPTLEIS 273
             + GL     +   + +   L++S
Sbjct: 656 NMLTGLWSKEELKRAVAMLEKLQMS 680



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 147/335 (43%), Gaps = 46/335 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +FN LIK FC    +  A     K+   G  P+V T  TL+ GL     ++  L    +M
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
                 F    +PNV  + +L++GLC++                            ++VE
Sbjct: 176 ------FETTCRPNVVTFTTLMNGLCRE---------------------------GRIVE 202

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR-KGFMPDVFSYSVLI 204
           A  LL+ MM+ GL P   TY  +++G C  G    A+ L   M      +P+V  YS +I
Sbjct: 203 AVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAII 262

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           +  CK+    +A N            +F EM+   + P+ FT N  I G C +G   +  
Sbjct: 263 DSLCKDGRHSDAQN------------LFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           +L   +        V  +N+LI    K G F  A EL++++  + ++ + + Y+ +I   
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            K+ ++    ++   M   GC+ ++ TFNTL+  +
Sbjct: 371 CKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 126/274 (45%), Gaps = 21/274 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+V  +  L+  + +    D    L+ +M+ K I  +           C  +KL  A   
Sbjct: 77  PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALST 136

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              + + GL+P + T+T LL+G C+  +V+ A+  F  M      P+V +++ L+NG C+
Sbjct: 137 FGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              + EA+ +   M+ +G +            P   T    +DG+CK G  +  + L   
Sbjct: 197 EGRIVEAVALLDRMMEDGLQ------------PTQITYGTIVDGMCKKGDTVSALNLLRK 244

Query: 270 LE-ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
           +E +S+    V I++++I   CK G    A  LF ++  K +  D+  YN +I      G
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +      LL  M E   + DV T+N L+ +F+++
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALINAFVKE 338



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  A   F S   + + P N VTF +LI G+C  G + D  +L  +M   G   N  T
Sbjct: 560 SRLDEATQMFDSMGSKSFSP-NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL 110
             TLI G R+ GN+N  L + QEM++      G+Y P+     +++ GL
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMIS-----SGVY-PDTITIRNMLTGL 661


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 175/343 (51%), Gaps = 26/343 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFNS++ G C  G +  A ++  +M   G  P+V + +TL++G  + G ++ +L + 
Sbjct: 80  NLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVF 139

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM        G+  P+V  + SLI   CK   ++Q   L  +M+++G+  N +      
Sbjct: 140 SEMTQ-----RGLV-PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 193

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CKK  L +A   +E M + G+ P +  Y  L+NGYC +G++++A  L   M  K   
Sbjct: 194 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVK 253

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV +YS +I+GYCK  N++ A  ++++M+  G            V+P+  T +  I GL
Sbjct: 254 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG------------VLPDAITYSSLIRGL 301

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+   + +  ELF  +     +     + +LI G CK G  E A  L +++  K ++ DV
Sbjct: 302 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDV 361

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           V Y++LI+ L K  + K+ + LL  +       D   ++ LM+
Sbjct: 362 VTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALML 404



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 168/351 (47%), Gaps = 26/351 (7%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R    P N  T+N L++  C  G + +A  +V  M   GC PN  T +TL+    R G
Sbjct: 1   MVRHGVAP-NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAG 59

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG--- 130
            ++       E V  +    G  KPN+  + S+++GLCK   ++  + +F EM  +G   
Sbjct: 60  ELD-----GAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP 114

Query: 131 --INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
             ++ NTLL   CK   L E+  +   M QRGL P + T+T L++  C  G +  A+AL 
Sbjct: 115 DVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALV 174

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             M  +G   +  +++ LI+G+CK   +++A+                EM+ C + P   
Sbjct: 175 AQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA------------VEEMRKCGIQPSVV 222

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
             N  I+G CK G +    EL   +E    +  V  ++++I G CK G  + A +L  K+
Sbjct: 223 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM 282

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             K ++ D + Y+ LI  L +E ++     L  +M + G   D  T+ TL+
Sbjct: 283 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLI 333



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 162/322 (50%), Gaps = 21/322 (6%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N+VTF +LI GFC +G + DA   V++M   G +P+V   + LI G  + G M+L  +L
Sbjct: 184 MNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAREL 243

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM           KP+V  Y ++I G CK   +D    L  +M  KG+  + +     
Sbjct: 244 IREME------AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSL 297

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ +L +A  L E M+Q G+ P  FTYT L++G+C  G V  A++L D M RKG 
Sbjct: 298 IRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 357

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNV-----SREMILNGFKKIFNEMKLCNVVPETFTCN 248
           +PDV +YSVLING  K+   +EA  +       + + +  K  ++ + LC    E  +  
Sbjct: 358 LPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIK--YDALMLCCSKAEFKSVV 415

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             + G C  G + E  +++ ++   N +L   +++ LI G C+ G    A     ++   
Sbjct: 416 ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 475

Query: 309 NLVADVVAYNILIHALGKEGQI 330
               +  +   L+  L +EG +
Sbjct: 476 GFSPNSTSTISLVRGLFEEGMV 497



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 129/271 (47%), Gaps = 21/271 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRL 149
           PNV+ Y  L+  LC    +++   +  +M+  G     +  NTL+   C+  +L  A R+
Sbjct: 8   PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 67

Query: 150 LELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           + LM + G   P + T+  ++NG C  G++  A  +FD M R+G  PDV SY+ L++GYC
Sbjct: 68  VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC 127

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K   + E++ V            F+EM    +VP+  T    I   CK G++ + + L  
Sbjct: 128 KVGCLHESLAV------------FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVA 175

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +      +    F +LI G CK G  + A     ++    +   VV YN LI+   K G
Sbjct: 176 QMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLG 235

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ++     L+  ME      DV T++T++  +
Sbjct: 236 RMDLARELIREMEAKRVKPDVVTYSTIISGY 266



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 11/210 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M++ G+ P ++TY  L+   C  G++  A+ +   M   G  P+  +Y+ L+  +C+   
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           ++ A  V   M   G           N  P   T N  ++GLCK G +    ++F  +  
Sbjct: 61  LDGAERVVSLMREEG-----------NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVR 109

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 V  +N+L+ G CK G    +  +F++++ + LV DVV +  LIHA  K G +++
Sbjct: 110 EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQ 169

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              L+  M E G  ++  TF  L+  F +K
Sbjct: 170 AVALVAQMRERGLRMNEVTFTALIDGFCKK 199


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 166/349 (47%), Gaps = 26/349 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+  L++  C      +A  + + MA  GC PNV +   LI GL R   ++   +L 
Sbjct: 51  NTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELL 110

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-----KDKGINANTLL 137
            EM++G       ++PNV  YGSL+ GLCK   + +  DLF  M        G+  N L+
Sbjct: 111 NEMIDGG------HQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLI 164

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               KK  + EA RL E M+++G  P +FTY  LL+G+   G+     +LF  M R+G +
Sbjct: 165 DGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCV 224

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P++F+++ L++G+CK  ++ EA             ++F EM+     P+  + N  I G+
Sbjct: 225 PNIFTFNNLLDGFCKMGDMVEA------------HRLFLEMRSLGCPPDVVSYNTLIRGM 272

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G   E   L   +  S     +  +N LI G  K G  + A +LF ++    L  D 
Sbjct: 273 CSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDA 332

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +Y+ +I  L + G++     +   M  NG A D      L+I   + E
Sbjct: 333 FSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGE 381



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 160/323 (49%), Gaps = 28/323 (8%)

Query: 14  FIRRCYR--PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71
           F R  YR  P + V +N LI GF  +G++ +A +L ++M   GC P V T ++L++G  R
Sbjct: 145 FSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSR 204

Query: 72  TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG- 130
            G       L ++M+      G +  PN+F + +L+DG CK   + +   LF+EM+  G 
Sbjct: 205 KGEFGRVQSLFKDMLRQ----GCV--PNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258

Query: 131 ----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
               ++ NTL   +C K K  EA RLL  M++ G+ P I +Y  L++GY   G ++ AI 
Sbjct: 259 PPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIK 318

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           LF  + + G  PD FSYS +I+  C+   V  A  V ++MI NG              P+
Sbjct: 319 LFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANG------------SAPD 366

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
                  + GLC+   + E  ELF  +    C   +  +N L+   CK    +   E+F+
Sbjct: 367 AAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFH 426

Query: 304 KLSCKNLVADVVAYNILIHALGK 326
           +L+ +    DV    +++  L +
Sbjct: 427 ELTERGFSPDVEISKVILETLRR 449



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 151/340 (44%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +++N L++     G           M   GC PN  T   L+  L +           + 
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEA----RS 73

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +  GM   G    PNVF Y  LI GLC+ + VD+  +L  EM D G   N +        
Sbjct: 74  VFRGMAAQG--CSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSG 131

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  KL EA  L   M+ RG  P    Y  L++G+   G +  A  LF+ M  KG +P 
Sbjct: 132 LCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPT 191

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           VF+Y+ L++G+            SR+      + +F +M     VP  FT N  +DG CK
Sbjct: 192 VFTYNSLLSGF------------SRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G ++E   LF  +    C   V  +N+LIRG C  G    A  L  ++    +  D+V+
Sbjct: 240 MGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVS 299

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YNILI    K G +     L   + ++G   D  +++T++
Sbjct: 300 YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTII 339



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 155/342 (45%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ SL+ G C  G +++A  L  +M   GC P+    + LI G  + G+M    +L 
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM+    + G I  P VF Y SL+ G  +     + + LF +M  +G   N        
Sbjct: 181 EEML----EKGCI--PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLL 234

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   +VEA+RL   M   G  P + +Y  L+ G C  GK + A  L   M R G  
Sbjct: 235 DGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVG 294

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ SY++LI+GY K+  ++ A+            K+F E+    + P+ F+ +  ID L
Sbjct: 295 PDIVSYNILIDGYSKSGALDHAI------------KLFYEIPKSGLEPDAFSYSTIIDCL 342

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G V     +F  +  +       +   L+ G C+      + ELF  +     V  +
Sbjct: 343 CRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLI 402

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             YN+L++ L K  +      +   + E G + DV+    ++
Sbjct: 403 PEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVIL 444



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 118/269 (43%), Gaps = 20/269 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           Y      Y  L++ L K    D     + +M   G   NT         LC+  +  EA 
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +   M  +G +P +F+Y+ L+ G C   KV+ A  L + M   G  P+V +Y  L++G 
Sbjct: 73  SVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK   ++EA+++   M+  G              P+    N+ IDG  K G + E   LF
Sbjct: 133 CKMGKLKEAVDLFSRMVYRG------------CPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +    C   V  +NSL+ G  + G F     LF  +  +  V ++  +N L+    K 
Sbjct: 181 EEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKM 240

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
           G + + + L L M   GC  DV ++NTL+
Sbjct: 241 GDMVEAHRLFLEMRSLGCPPDVVSYNTLI 269



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 12/208 (5%)

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           Q   N    +Y  LL      G+ +     ++ M   G +P+ ++Y  L+   C+    E
Sbjct: 10  QVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFE 69

Query: 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           EA +V R M   G          C+  P  F+ +I I GLC+   V E  EL   +    
Sbjct: 70  EARSVFRGMAAQG----------CS--PNVFSYSILIAGLCRGQKVDEAAELLNEMIDGG 117

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            +  V  + SL+ G CK G  + A +LF+++  +    D V YN+LI    K+G + +  
Sbjct: 118 HQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAY 177

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQK 362
            L   M E GC   V T+N+L+  F +K
Sbjct: 178 RLFEEMLEKGCIPTVFTYNSLLSGFSRK 205


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 177/366 (48%), Gaps = 28/366 (7%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GA+   G  I +  +P + +T+N+LI G C     ++A   + KM   G  P+  T +TL
Sbjct: 269 GAVRMVGCLIEQGPKP-DVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTL 327

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I G  + G + L      E + G   F G + P+ F Y SLIDGLC +   ++   LF E
Sbjct: 328 IAGYCKGGMVQLA-----ERIVGDAVFNG-FVPDQFTYRSLIDGLCHEGETNRALALFNE 381

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
              KGI  N +        L  +  ++EA +L   M ++GL P + T+  L+NG C +G 
Sbjct: 382 ALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGC 441

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           V+ A  L   M  KG+ PD+F++++LI+GY     +E A+ +   M+ NG          
Sbjct: 442 VSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNG---------- 491

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             V P+ +T N  ++GLCK     +VME + T+    C   +  FN L+   C++   + 
Sbjct: 492 --VDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDE 549

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN-GCALDVDTFNTLM 356
           A  L  ++  K++  D V +  LI    K G +     L   MEE    +    T+N ++
Sbjct: 550 ALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIII 609

Query: 357 ISFLQK 362
            +F +K
Sbjct: 610 HAFTEK 615



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 167/367 (45%), Gaps = 28/367 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK   A +  G  +     P +  T+N+LI G+C  G ++ A ++V      G  P+  T
Sbjct: 300 SKFQEAEVYLGKMVNEGLEP-DSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFT 358

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             +LI GL   G  N  L L  E +      G   KPNV  Y +LI GL    ++ +   
Sbjct: 359 YRSLIDGLCHEGETNRALALFNEAL------GKGIKPNVILYNTLIKGLSNQGMILEAAQ 412

Query: 122 LFMEMKDKGI-----NANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  EM +KG+       N L   LCK   + +A+ L+++M+ +G  P IFT+  L++GY 
Sbjct: 413 LANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYS 472

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
              K+  A+ + D M   G  PDV++Y+ L+NG CK    E+ M   + M+  G      
Sbjct: 473 TQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKG------ 526

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P  FT NI ++ LC+   + E + L   ++  +       F +LI G CK G
Sbjct: 527 ------CAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNG 580

Query: 294 IFEIASELFNKL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             + A  LF K+     + +    YNI+IHA  ++  +     L   M +     D  T+
Sbjct: 581 DLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTY 640

Query: 353 NTLMISF 359
             ++  F
Sbjct: 641 RLMVDGF 647



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 174/389 (44%), Gaps = 60/389 (15%)

Query: 31  IKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG-- 88
           +K +  +G +++A  + ++M  + C P V + + +++ L  +G  +   K++  M +   
Sbjct: 83  MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGI 142

Query: 89  ----------MGDFGGIYKP-----------------NVFCYGSLIDGLCKDRLVDQTKD 121
                     M  F    +P                 NV  Y +++ G  ++    +  +
Sbjct: 143 TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYE 202

Query: 122 LFMEMKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF +M   G++      N LL   CKK  + E  +LL+ +++RG+ P +FTY   + G C
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLC 262

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----- 228
             G+++ A+ +   +  +G  PDV +Y+ LI G CKN   +EA     +M+  G      
Sbjct: 263 QRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSY 322

Query: 229 ------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                             ++I  +      VP+ FT    IDGLC  G     + LF   
Sbjct: 323 TYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEA 382

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                +  V ++N+LI+G    G+   A++L N++S K L+ +V  +NIL++ L K G +
Sbjct: 383 LGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCV 442

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISF 359
              + L+  M   G   D+ TFN L+  +
Sbjct: 443 SDADGLVKVMISKGYFPDIFTFNILIHGY 471



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 118/282 (41%), Gaps = 62/282 (21%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN L+ G C  G + DA  LVK M + G  P++ T + LI G      M   L++   M
Sbjct: 428 TFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM 487

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           ++   D      P+V+ Y SL++GLCK    +   + +  M +KG   N          L
Sbjct: 488 LDNGVD------PDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG--------------------- 176
           C+  KL EA  LLE M  + +NP   T+  L++G+C  G                     
Sbjct: 542 CRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSS 601

Query: 177 -------------KVNVAIA--LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
                        K+NV +A  LF  M  +   PD ++Y ++++G+CK  NV        
Sbjct: 602 TPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLL 661

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           EM+ NGF            +P   T    I+ LC    V E 
Sbjct: 662 EMMENGF------------IPSLTTLGRVINCLCVEDRVYEA 691



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 15/212 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NSL+ G C      D  +  K M   GC PN+ T + L+  L R   ++  L L +EM
Sbjct: 498 TYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEM 557

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANT--------L 136
            N          P+   +G+LIDG CK+  +D    LF +M++   ++++T         
Sbjct: 558 KNKS------VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHA 611

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             +K  +  A +L + M+ R L P  +TY  +++G+C  G VN+       M   GF+P 
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPS 671

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           + +   +IN  C    V EA  +   M+  G 
Sbjct: 672 LTTLGRVINCLCVEDRVYEAAGIIHRMVQKGL 703



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 126/282 (44%), Gaps = 22/282 (7%)

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-------KGINANTL 136
           EM N M    G +K  +  Y S+I+ L      +  +++ ++M++       +G+    +
Sbjct: 25  EMFNSMRKEVG-FKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAM 83

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               +K K+ EA  + E M      P +F+Y  +++     G  + A  ++  M  +G  
Sbjct: 84  KNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGIT 143

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV+S+++ +  +CK      A+ +   M   G +   N +  C VV   +  N   +G 
Sbjct: 144 PDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCE--MNVVAYCTVVGGFYEENFKAEGY 201

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
                     ELF  +  S   L +  FN L+R  CK G  +   +L +K+  + ++ ++
Sbjct: 202 ----------ELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNL 251

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             YN+ I  L + G++     ++  + E G   DV T+N L+
Sbjct: 252 FTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLI 293



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 12/198 (6%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y   +  Y   GKV  A+ +F+ M      P VFSY+ +++    +   ++A        
Sbjct: 79  YVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQA-------- 130

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                K++  M+   + P+ ++  I +   CK       + L   +    CE+ V  + +
Sbjct: 131 ----HKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCT 186

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           ++ G  +        ELF K+    +   +  +N L+  L K+G +K+   LL  + + G
Sbjct: 187 VVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG 246

Query: 345 CALDVDTFNTLMISFLQK 362
              ++ T+N  +    Q+
Sbjct: 247 VLPNLFTYNLFIQGLCQR 264



 Score = 44.7 bits (104), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 89/188 (47%), Gaps = 22/188 (11%)

Query: 181 AIALFDSMARK-GFMPDVFSYSVLIN--GYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           A+ +F+SM ++ GF   + +Y  +I   GY   F   EAM    E++++  + + N M  
Sbjct: 23  ALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKF---EAM---EEVLVDMRENVGNHM-- 74

Query: 238 CNVVPETFTCNIFIDGL---CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                      +++  +    + G V E + +F  ++  +CE  V  +N+++      G 
Sbjct: 75  --------LEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGY 126

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           F+ A +++ ++  + +  DV ++ I + +  K  +      LL +M   GC ++V  + T
Sbjct: 127 FDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCT 186

Query: 355 LMISFLQK 362
           ++  F ++
Sbjct: 187 VVGGFYEE 194


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 179/345 (51%), Gaps = 25/345 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTFN+L+ GF  +G   D  +L++ MA    +PNV + + L+ GL +    +    
Sbjct: 7   PPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEA-- 64

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
             +E+V  M   GG   P++  Y +L+ G CK   V+++++L  E+  +G+  + L    
Sbjct: 65  --EELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTK 122

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  +L EA  LLE M++ G  P + T+  L++G C    + +A +L   MA  G
Sbjct: 123 VVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASG 182

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              DV +Y+ L++G CK   ++EA            +++   MK     P+    + F+ 
Sbjct: 183 VKADVVTYNTLMDGLCKAGRLQEA------------EQLLERMKASGCAPDVVAYSSFVY 230

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK+G VL+  ++   +  S+ +  V  +N+++ G CK G  + A E+  +++  +   
Sbjct: 231 GLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCG 290

Query: 313 -DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +VV Y+ ++  L K G+ ++   ++ +M   GC  DV T+++L+
Sbjct: 291 LNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLV 335



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 157/330 (47%), Gaps = 38/330 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN+LI G C E N+  A  L++KMA  G + +V T +TL+ GL + G +    +L + 
Sbjct: 153 ITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLER 212

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           M  +G         P+V  Y S + GLCK   V     +  +M+D   + N +       
Sbjct: 213 MKASGCA-------PDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILD 265

Query: 137 -LCKKTKLVEANRLLELMMQR---GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
            LCK  K+  A  ++E M      GLN  +  Y+ +++G C +G+   A ++ ++MAR G
Sbjct: 266 GLCKSGKIDTALEMMEQMASSDGCGLN--VVGYSTVVDGLCKLGRTQEARSVMEAMARAG 323

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PDV +YS L+NG CK   +EEA+   REM + G K            P   T    + 
Sbjct: 324 CRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCK------------PNAVTYCSLVH 371

Query: 253 GLCKNGHVLEVMELFPTLEISN-----CELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           GLC  G + E   +   +         C   V  +N+LI G CK G  + A + F ++  
Sbjct: 372 GLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRS 431

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLL 337
           +    D V+Y+ ++  L + G+  +   +L
Sbjct: 432 QGCDPDGVSYSTIVEGLARSGRALQAEMIL 461



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 170/393 (43%), Gaps = 68/393 (17%)

Query: 14  FIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKK----------------------- 49
            I R  R   D VT+++L+ G+C  G + ++ +L+K+                       
Sbjct: 71  MISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKS 130

Query: 50  ------------MATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97
                       M   GC P + T +TLI+G  R  N+ +   L Q+M        G+ K
Sbjct: 131 ARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMA-----ASGV-K 184

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
            +V  Y +L+DGLCK   + + + L   MK  G   + +        LCK  K+++A+++
Sbjct: 185 ADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQV 244

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK-GFMPDVFSYSVLINGYC 208
           LE M     +P + TY  +L+G C  GK++ A+ + + MA   G   +V  YS +++G C
Sbjct: 245 LEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLC 304

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K    +EA +V   M   G +            P+  T +  ++GLCK G + E +E   
Sbjct: 305 KLGRTQEARSVMEAMARAGCR------------PDVVTYSSLVNGLCKAGKIEEAVEAVR 352

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV-----ADVVAYNILIHA 323
            + +  C+     + SL+ G C  G    A  +  ++S            V  YN LI  
Sbjct: 353 EMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGG 412

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L K G+I         M   GC  D  +++T++
Sbjct: 413 LCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIV 445



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 48/248 (19%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V ++S + G C  G + DA Q++++M      PNV T +T++ GL ++G ++  L++ ++
Sbjct: 223 VAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQ 282

Query: 85  M----------------VNGMGDFGGIY--------------KPNVFCYGSLIDGLCKDR 114
           M                V+G+   G                 +P+V  Y SL++GLCK  
Sbjct: 283 MASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAG 342

Query: 115 LVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLN-----PV 161
            +++  +   EM  +G   N +        LC   +L EA R++E M   G       P 
Sbjct: 343 KIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPS 402

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           + TY  L+ G C  G+++ A+  F  M  +G  PD  SYS ++ G  ++    +A     
Sbjct: 403 VSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA----- 457

Query: 222 EMILNGFK 229
           EMIL+  +
Sbjct: 458 EMILSEVR 465


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 182/372 (48%), Gaps = 35/372 (9%)

Query: 14  FIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
            IR+  +   D VT+N+LI  F     IR+A    +KM   G  P+V TC+ L++G+ + 
Sbjct: 158 MIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKD 217

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK--DKG 130
           G++   L    E+++GM   G +  P+V  Y S+I  LC    V +  ++   M      
Sbjct: 218 GDVEEAL----EILDGMKLAGPV--PDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDL 271

Query: 131 INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +  NTLL   CK   L  A  +LE M +  + P + TYT L+NG C VG+V VA  L + 
Sbjct: 272 VTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEE 331

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-------------------- 227
           + R+G++PDV +Y+ L++G CK+  +EEA  + +EM + G                    
Sbjct: 332 IVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGN 391

Query: 228 ---FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
               ++I  EM   N+VP  FT NI + GL K+G + + + L   L        V  +N+
Sbjct: 392 VHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNT 451

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI G CK      A +L ++++ +    + V    ++  L + G++     L++ M    
Sbjct: 452 LIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKR 511

Query: 345 CALDVDTFNTLM 356
            A +V  + +L+
Sbjct: 512 HAPNVVVYTSLI 523



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 178/399 (44%), Gaps = 71/399 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF  LI+G C  G    A + ++ +  F   P+V   + LI GL + GN +  +KL 
Sbjct: 61  NLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLF 120

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-------INANT 135
           + M +         KP +  Y ++I GLCK   +++ ++L  EM  KG       +  NT
Sbjct: 121 ENMESSR------VKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNT 174

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+    + +++ EA    E M   G+NP + T   L++G C  G V  A+ + D M   G
Sbjct: 175 LINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAG 234

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREM-----------ILNGFKK---------IF 232
            +PDV +Y+ +I+  C    V EA  + + M           +L+GF K         + 
Sbjct: 235 PVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVL 294

Query: 233 NEMKLCNVVPETFTCNI-----------------------------------FIDGLCKN 257
            EM   N++P+  T  I                                    +DGLCK+
Sbjct: 295 EEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKS 354

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + E  +L   + +  C   V +++SL+ G C+ G    A E+  ++   N+V  +  Y
Sbjct: 355 GEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTY 414

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           NI++  L K+G I K   L+  +   G   DV T+NTL+
Sbjct: 415 NIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLI 453



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 156/339 (46%), Gaps = 26/339 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN+L+ GFC  G +  A +++++M      P+V T   L+ GL R G + +   L +E
Sbjct: 272 VTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEE 331

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           +V         Y P+V  Y SL+DGLCK   +++   L  EM  +G     ++       
Sbjct: 332 IVRQG------YIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSG 385

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+   + +A  +L  M+   + P +FTY  +L G    G ++ A++L   +  +G++PD
Sbjct: 386 YCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPD 445

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ LI+G CK   V EA +++ EM   G              P   T    + GLC+
Sbjct: 446 VVTYNTLIDGLCKANRVREACDLADEMASRG------------CFPNDVTLGSVVFGLCR 493

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V +   L   +        V ++ SLI G CK    + A  + + +  + +  D  A
Sbjct: 494 VGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFA 553

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           Y  LI ++   G++ +   +   M   G   D  T  TL
Sbjct: 554 YRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 592



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 27/262 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R+ Y P + + + SL+ G C  G I +A +LVK+M+  GCR  V    +L++G  R G
Sbjct: 332 IVRQGYIP-DVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAG 390

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG--- 130
           N++   ++  EMV+          P +F Y  ++ GL KD  + +   L  ++  +G   
Sbjct: 391 NVHKAREILAEMVSIN------MVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVP 444

Query: 131 --INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
             +  NTL   LCK  ++ EA  L + M  RG  P   T   ++ G C VG+V+ A +L 
Sbjct: 445 DVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLV 504

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             M+RK   P+V  Y+ LI+G CK+  +++A      M+L+        M+   V  + F
Sbjct: 505 VEMSRKRHAPNVVVYTSLIDGLCKSDRMDDAC-----MVLDA-------MRGQGVALDDF 552

Query: 246 TCNIFIDGLCKNGHVLEVMELF 267
                I  +   G V E M ++
Sbjct: 553 AYRKLIVSMSHGGRVAEAMAMY 574


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 172/350 (49%), Gaps = 47/350 (13%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + +TL+ 
Sbjct: 108 VWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMN 167

Query: 68  GLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           G  R G+++   +L   M+ NG+       +P+V+ Y  LI+GLCK+             
Sbjct: 168 GYIRLGDLDEGFRLKSAMLANGV-------QPDVYTYSVLINGLCKE------------- 207

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                         +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+ ++ 
Sbjct: 208 --------------SKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYK 253

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M  +  +PD+ +Y+ LI G CKN ++++A ++  EM + G K            P+ FT
Sbjct: 254 RMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLK------------PDKFT 301

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
               IDG CK G +    +    +   N  L    + +LI G C+ G    A ++  ++ 
Sbjct: 302 YTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREML 361

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              L  D+  Y ++I+   K+G + K + LL  M+ NG A  V T+N LM
Sbjct: 362 SVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 411



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 160/344 (46%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 57  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGFYEEIL 116

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 117 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 170

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 171 RLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGV 230

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + + M+              +++P+  T N  I GLCKNG
Sbjct: 231 TFTTLIDGHCKNGRVDLAMEIYKRMLSQ------------SLLPDLITYNTLIYGLCKNG 278

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A +   ++  +N+  D VAY 
Sbjct: 279 DLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYT 338

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EGQ      +L  M   G   D+ T+  ++  F +K
Sbjct: 339 ALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKK 382



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 228 NGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGD----LKQA 283

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++++ M   G   KP+ F Y +LIDG CK+  +D        M  + I  + +      
Sbjct: 284 HDLIDEMSMKG--LKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALI 341

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+  GL P I TYT ++N +C  G V     L   M R G  
Sbjct: 342 SGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHA 401

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 402 PSVVTYNVLMNG 413


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 190/434 (43%), Gaps = 77/434 (17%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  AL  FG   +  + P   VTFN+L+ G C+E  + +A  L  +M    C+PNV T
Sbjct: 29  SKLPFALSTFGKLTKLGFHP-TLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVT 83

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMV---------------NGMGDFGGIY---------- 96
             TL+ GL R G +   + L   MV               +GM   G             
Sbjct: 84  FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME 143

Query: 97  -----KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKL 143
                KP+V  Y ++IDGL KD      ++LF+EM+DKGI  + +         C   K 
Sbjct: 144 ELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKW 203

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA RLL+ M+ R ++P + T++ L+N     G +N A  L   M   G  P+V + + L
Sbjct: 204 SEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTL 263

Query: 204 INGYCKNFNVEEA-----------MNVSREMILNGFK----------------------- 229
           ++G C +  +++A           M++      NG +                       
Sbjct: 264 LDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAE 323

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
           +++ EM    +VP+T T +  I+GLCK   + E  ++F ++   +    +  FN+LI G 
Sbjct: 324 ELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGY 383

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G+ +   ELF ++  + +VA+ + Y  LI    K G I     +   M  +G   D 
Sbjct: 384 CKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDT 443

Query: 350 DTFNTLMISFLQKE 363
            T   ++     KE
Sbjct: 444 ITIRNMLTGLWSKE 457



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 171/382 (44%), Gaps = 53/382 (13%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +  +FN LIK FC    +  A     K+   G  P + T +TL+ GL     ++  L 
Sbjct: 12  PCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALD 71

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  +M           KPNV  + +L++GLC++  V +   L   M + G+  N +    
Sbjct: 72  LFHQMC----------KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 121

Query: 137 ----LCKKTKLVEANRLLELMMQ-RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
               +CK    V A  LL  M +   + P +  Y+ +++G    G+   A  LF  M  K
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDK 181

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI-----------------------LNGF 228
           G  PD+ +YS +ING+C +    EA  + +EM+                       LN  
Sbjct: 182 GIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSA 241

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-----------NCEL 277
           + +  EM    V P   TCN  +DGLC +G + + +E+F  ++ S             E 
Sbjct: 242 QDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEP 301

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V+ +N LI G    G F  A EL+ ++  + +V D V Y+ +I+ L K+ ++ +   + 
Sbjct: 302 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMF 361

Query: 338 LSMEENGCALDVDTFNTLMISF 359
            SM     + ++ TFNTL+  +
Sbjct: 362 DSMGSKSFSPNIVTFNTLITGY 383



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 130/262 (49%), Gaps = 25/262 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF+ LI     EG++  A  L+++M + G  PNV TC+TL+ GL  +G +   L++ + 
Sbjct: 223 VTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKA 282

Query: 85  MVNGMGDFGGIY-----KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           M   M D    +     +P+V  Y  LI GL  +    + ++L+ EM  +GI  +T+   
Sbjct: 283 MQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYS 342

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK+++L EA ++ + M  +  +P I T+  L+ GYC  G V+  + LF  M R+
Sbjct: 343 SMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRR 402

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G + +  +Y  LI G+ K  N+            NG   IF EM    V P+T T    +
Sbjct: 403 GIVANAITYITLIRGFRKVGNI------------NGSLDIFQEMISSGVYPDTITIRNML 450

Query: 252 DGLCKNGHVLEVMELFPTLEIS 273
            GL     + + + +   L++S
Sbjct: 451 TGLWSKEELKKALAMLEELQMS 472


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 190/434 (43%), Gaps = 77/434 (17%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  AL  FG   +  + P   VTFN+L+ G C+E  + +A  L  +M    C+PNV T
Sbjct: 29  SKLPFALSTFGKLTKLGFHP-TLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVT 83

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMV---------------NGMGDFGGIY---------- 96
             TL+ GL R G +   + L   MV               +GM   G             
Sbjct: 84  FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME 143

Query: 97  -----KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKL 143
                KP+V  Y ++IDGL KD      ++LF+EM+DKGI  + +         C   K 
Sbjct: 144 ELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKW 203

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA RLL+ M+ R ++P + T++ L+N     G +N A  L   M   G  P+V + + L
Sbjct: 204 SEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTL 263

Query: 204 INGYCKNFNVEEA-----------MNVSREMILNGFK----------------------- 229
           ++G C +  +++A           M++      NG +                       
Sbjct: 264 LDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAE 323

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
           +++ EM    +VP+T T +  I+GLCK   + E  ++F ++   +    +  FN+LI G 
Sbjct: 324 ELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGY 383

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G+ +   ELF ++  + +VA+ + Y  LI    K G I     +   M  +G   D 
Sbjct: 384 CKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDT 443

Query: 350 DTFNTLMISFLQKE 363
            T   ++     KE
Sbjct: 444 ITIRNMLTGLWSKE 457



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 171/382 (44%), Gaps = 53/382 (13%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +  +FN LIK FC    +  A     K+   G  P + T +TL+ GL     ++  L 
Sbjct: 12  PCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALD 71

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  +M           KPNV  + +L++GLC++  V +   L   M + G+  N +    
Sbjct: 72  LFHQMC----------KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 121

Query: 137 ----LCKKTKLVEANRLLELMMQ-RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
               +CK    V A  LL  M +   + P +  Y+ +++G    G+   A  LF  M  K
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDK 181

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI-----------------------LNGF 228
           G  PD+ +YS +ING+C +    EA  + +EM+                       LN  
Sbjct: 182 GIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSA 241

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-----------NCEL 277
           + +  EM    V P   TCN  +DGLC +G + + +E+F  ++ S             E 
Sbjct: 242 QDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEP 301

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V+ +N LI G    G F  A EL+ ++  + +V D V Y+ +I+ L K+ ++ +   + 
Sbjct: 302 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMF 361

Query: 338 LSMEENGCALDVDTFNTLMISF 359
            SM     + ++ TFNTL+  +
Sbjct: 362 DSMGSKSFSPNIVTFNTLITGY 383



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 25/262 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF+ LI     EG++  A  L+++M + G  PNV TC+TL+ GL  +G +   L++ + 
Sbjct: 223 VTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKA 282

Query: 85  MVNGMGDFGGIY-----KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           M   M D    +     +P+V  Y  LI GL  +    + ++L+ EM  +GI  +T+   
Sbjct: 283 MQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYS 342

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK+++L EA ++ + M  +  +P I T+  L+ GYC  G V+  + LF  M R+
Sbjct: 343 SMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRR 402

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G + +  +Y  LI G+ K  N+            NG   IF EM    V P+T T    +
Sbjct: 403 GIVANAITYITLIRGFRKVGNI------------NGSLDIFQEMISSGVYPDTITIRNML 450

Query: 252 DGLCKNGHVLEVMELFPTLEIS 273
            GL     +   + +   L++S
Sbjct: 451 TGLWSKEELKRALAMLEELQMS 472


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 177/364 (48%), Gaps = 36/364 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N ++ G+C  GN+ +A+Q V  +   G  P+  T  +LI G  +  +++   K+ 
Sbjct: 217 NIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVF 276

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----INANTLL- 137
           +EM        G  + N   Y  LI GLC +R +D+  DLF++MKD      +   T+L 
Sbjct: 277 KEM-----PLKGCRR-NEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLI 330

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C   +  EA  L++ M ++G+ P I TYT L++  C   K+  A  L   M  KG M
Sbjct: 331 KALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLM 390

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNV-----SREM---------ILNGFKK--------IF 232
           P+V +Y+ LINGYCK   +E+A++V     SR +         ++ G+ K        + 
Sbjct: 391 PNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVL 450

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           N+M    V+P+  T N  IDG C++G+      L   +           + S+I   CK 
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKS 510

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              E A +LF+ L  K+++ +VV Y  LI    K G++ + + +L  M    C  +  TF
Sbjct: 511 KRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTF 570

Query: 353 NTLM 356
           N L+
Sbjct: 571 NALI 574



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 169/376 (44%), Gaps = 40/376 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           ++ C R  N+V +  LI G C+E  I +A  L  KM    C P V T   LI  L  +  
Sbjct: 281 LKGCRR--NEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSER 338

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
            +  L L +EM     +  GI KPN+  Y  LID LC    +++ ++L  +M +KG+  N
Sbjct: 339 KSEALNLVKEM-----EEKGI-KPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPN 392

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +         CK+  + +A  ++ELM  R L P   TY  L+ GYC    V+ A+ + +
Sbjct: 393 VITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYC-KRNVHKAMGVLN 451

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV-----SREMILNGFK------------ 229
            M  +  +PDV +Y+ LI+G C++ N + A  +      R ++ + +             
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSK 511

Query: 230 ------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                  +F+ ++  +V+P        IDG CK G V E   +   +   NC      FN
Sbjct: 512 RVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFN 571

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LI G C  G  + A+ L  K+   +L   V    ILIH L K+G           M  +
Sbjct: 572 ALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSS 631

Query: 344 GCALDVDTFNTLMISF 359
           G   D  T+ T + ++
Sbjct: 632 GTKPDAHTYTTFIQTY 647



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 168/369 (45%), Gaps = 32/369 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A    G  + +   P N +T+N+LI G+C  G I DA  +V+ M +   RPN  T 
Sbjct: 373 KLEKARELLGQMLEKGLMP-NVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTY 431

Query: 63  DTLITGLRRTGNMNLTLKLHQEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           + LI G  +         +H+ M  +N M +   +  P+V  Y SLIDG C+    D   
Sbjct: 432 NELIKGYCKRN-------VHKAMGVLNKMLERKVL--PDVVTYNSLIDGQCRSGNFDSAY 482

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L   M D+G+  +          LCK  ++ EA  L + + Q+ + P +  YT L++GY
Sbjct: 483 RLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGY 542

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  GKVN A  + + M  K  +P+  +++ LI+G C +  ++EA  +  +M+     KI 
Sbjct: 543 CKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMV-----KI- 596

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                 ++ P   T  I I  L K+G        F  +  S  +     + + I+  C+ 
Sbjct: 597 ------DLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCRE 650

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  + A ++  K+    +  D+  Y+ LI   G  G+      +L  M + GC     TF
Sbjct: 651 GRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTF 710

Query: 353 NTLMISFLQ 361
            +L+   L+
Sbjct: 711 LSLIKHLLE 719



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 20/275 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           YK  + CY +L++ L +  LVD+ K ++MEM +  +  N           CK   + EAN
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEAN 238

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           + + ++++ GL+P  FTYT L+ GYC    ++ A  +F  M  KG   +  +Y+ LI+G 
Sbjct: 239 QYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGL 298

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C    ++EAM+            +F +MK  +  P   T  + I  LC +    E + L 
Sbjct: 299 CVERRIDEAMD------------LFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLV 346

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +E    +  +  +  LI   C     E A EL  ++  K L+ +V+ YN LI+   K 
Sbjct: 347 KEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKR 406

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           G I+    ++  ME      +  T+N L+  + ++
Sbjct: 407 GMIEDALDVVELMESRNLRPNTRTYNELIKGYCKR 441



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 174/409 (42%), Gaps = 63/409 (15%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + +V  A   F S  ++   P N V + +LI G+C  G + +A  +++KM +  C PN  
Sbjct: 510 SKRVEEACDLFDSLEQKDVIP-NVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSL 568

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T + LI GL   G +     L ++MV    D     +P V     LI  L KD   D   
Sbjct: 569 TFNALIHGLCTDGKLKEATLLEEKMVKI--DL----QPTVSTDTILIHRLLKDGDFDHAY 622

Query: 121 DLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
             F +M   G   +           C++ +L +A  ++  M + G++P +FTY+ L+ GY
Sbjct: 623 RRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGY 682

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLING-----YCKNFNVEEAMNV-SREMILN 226
             +G+ N A  +   M   G  P   ++  LI       Y K    E  + V S  M  +
Sbjct: 683 GDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFD 742

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE----ISNCELFVEIF 282
              ++  +M    V P   +    + G+C+ G++    ++F  ++    IS  EL   +F
Sbjct: 743 IVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSEL---VF 799

Query: 283 NSLIRGCCKFGIFEIASELFNKL----------SCKNLVA-------------------- 312
           N+L+  CCK      A+++ + +          SCK L+                     
Sbjct: 800 NALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQ 859

Query: 313 -----DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                D +A+ I+I  +GK+G ++    L   ME+NGC     T++ L+
Sbjct: 860 CGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLI 908



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 136/351 (38%), Gaps = 91/351 (25%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +TFN+LI G C +G +++A+ L +KM     +P V+T   LI  L + G+ +   +  
Sbjct: 566 NSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRF 625

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQ------------TKDLFM----- 124
           Q+M++         KP+   Y + I   C++ RL D             + DLF      
Sbjct: 626 QQMLSSGT------KPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLI 679

Query: 125 -----------------EMKDKG--INANTLLCKKTKLVEAN------------------ 147
                             M D G   + +T L     L+E                    
Sbjct: 680 KGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMM 739

Query: 148 ------RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK-GFMPDVFSY 200
                  LLE M++ G+ P   +Y  L+ G C +G + VA  +FD M +K G  P    +
Sbjct: 740 EFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVF 799

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNG---------------FKK--------IFNEMKL 237
           + L++  CK     EA  V  +MI  G               +KK        +F  +  
Sbjct: 800 NALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQ 859

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           C    +     I IDG+ K G V    ELF  +E + C    + ++ LI G
Sbjct: 860 CGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910



 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/129 (20%), Positives = 64/129 (49%), Gaps = 11/129 (8%)

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           +K C+ V +T    +F+  LC+  +  E  EL         +L +  +N+L+    +FG+
Sbjct: 150 IKSCDSVADT----LFVLDLCRKMNKDESFEL-------KYKLIIGCYNTLLNSLARFGL 198

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            +   +++ ++    +  ++  YN +++   K G +++ N  +  + E G   D  T+ +
Sbjct: 199 VDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTS 258

Query: 355 LMISFLQKE 363
           L++ + Q++
Sbjct: 259 LIMGYCQRK 267


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 177/350 (50%), Gaps = 26/350 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTFN+LI   C  G      +++ +MA  GC P++    T+I G+ + G+    LK
Sbjct: 259 PPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGH----LK 314

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
           +  E++N M  +G   KPNV CY +L+ GLC     ++T++L  EM DK      +  N 
Sbjct: 315 VAHEILNRMPSYG--LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNI 372

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+   C+   +     LLE M+  G  P + TYT ++NG+C  G ++ A+ L  SM   G
Sbjct: 373 LVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 432

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+  SY++++ G C      +A ++  +MI  G          C + P TF  N  I+
Sbjct: 433 CKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG----------CPLNPITF--NTLIN 480

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK G V + +EL   + ++ C   +  ++++I G  K G  + A EL N +  K +  
Sbjct: 481 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 540

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + + Y+ +  AL +EG+I K   +  ++++     D   +N ++ S  ++
Sbjct: 541 NTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKR 590



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 129/288 (44%), Gaps = 30/288 (10%)

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLELMMQR 156
           Y +++ G C+   ++  + L   +     NA T       LC + ++ +A  +L+ M +R
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVPVPP-NAYTYFPVVRALCARGRIADALAVLDEMPRR 151

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G  P+   Y  +L   C  G    A+ + + +  +G   DV + ++++N  C   +V++A
Sbjct: 152 GCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKA 211

Query: 217 MNVSREM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDG 253
           +++ R++              +L G          +++  EM      P   T N  I  
Sbjct: 212 LHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISY 271

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LC+NG    V E+   +    C   + ++ ++I G CK G  ++A E+ N++    L  +
Sbjct: 272 LCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPN 331

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           VV YN L+  L    + ++   LL  M +  C LD  TFN L+  F Q
Sbjct: 332 VVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 379



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 26/254 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+ ++I GFC EG I +A  L+K M   GC+PN  +   ++ GL           L  +
Sbjct: 403 ITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQ 462

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+            N   + +LI+ LCK  LV+Q  +L  +M   G + + +        
Sbjct: 463 MIQQGCPL------NPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 516

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K  K  EA  LL +M+ +G++P    Y+ + +     G++N  I +FD++       D
Sbjct: 517 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSD 576

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
              Y+ +I+  CK    E A+     M+ +G             VP   T  I I GL  
Sbjct: 577 AVLYNAVISSLCKRGETERAIEFLAYMVSSG------------CVPNESTYTILIRGLAS 624

Query: 257 NGHVLEVMELFPTL 270
            G V E  E+   L
Sbjct: 625 EGFVKEAQEMLTEL 638



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 29/344 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+++ G+C  G +  A +L    A     PN  T   ++  L   G +   L +  EM 
Sbjct: 93  YNAMVAGYCRAGQLESARRLA---AAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLL---C 138
                 G    P +  Y  +++  C+         +  ++  +G      N N +L   C
Sbjct: 150 R----RGCAPIPPM--YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAIC 203

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
            +  + +A  LL  +   G  P + +Y  +L G C+  +      L + M R    P++ 
Sbjct: 204 DQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV 263

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+  C+N   E    V  +M  +G              P+       IDG+CK G
Sbjct: 264 TFNTLISYLCRNGLFERVHEVLAQMAEHG------------CTPDIRMYATIIDGICKEG 311

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           H+    E+   +     +  V  +N+L++G C    +E   EL  ++  K+   D V +N
Sbjct: 312 HLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 371

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           IL+    + G + +   LL  M  +GC  DV T+ T++  F ++
Sbjct: 372 ILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKE 415


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 178/350 (50%), Gaps = 26/350 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTFN+LI   C  G      +++ +M   GC P++    T+I G+ + G+    L+
Sbjct: 259 PPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGH----LE 314

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
           +  E++N M  +G   KPNV CY +L+ GLC     ++T++L  EM DK      +  N 
Sbjct: 315 VAHEILNRMPSYG--LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNI 372

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+   C+   +     LLE M++RG  P + TYT ++NG+C  G ++ A+ L  SM   G
Sbjct: 373 LVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 432

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+  SY++++ G C      +A ++  +MI  G          C + P TF  N  I+
Sbjct: 433 CKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG----------CPLNPITF--NTLIN 480

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK G V + +EL   + ++ C   +  ++++I G  K G  + A EL N +  K +  
Sbjct: 481 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 540

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + + Y+ +  AL +EG+I K   +  ++++     D   +N ++ S  ++
Sbjct: 541 NTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKR 590



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 30/288 (10%)

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLELMMQR 156
           Y +++ G C+   ++  + L   +     NA T       LC + ++ +A  +L+ M +R
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVPVPP-NAYTYFPVVRALCARGRIADALAVLDEMPRR 151

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G  P+   Y  +L   C  G    A+ + + +  +G   DV + ++++N  C   +V+EA
Sbjct: 152 GCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEA 211

Query: 217 MNVSREM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDG 253
           +++ R++              +L G          +++  EM      P   T N  I  
Sbjct: 212 LHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISY 271

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LC+NG    V E+   +    C   + ++ ++I G CK G  E+A E+ N++    L  +
Sbjct: 272 LCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPN 331

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           VV YN L+  L    + ++   LL  M +  C LD  TFN L+  F Q
Sbjct: 332 VVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 379



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 26/254 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+ ++I GFC EG I +A  L+K M   GC+PN  +   ++ GL           L  +
Sbjct: 403 ITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQ 462

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+            N   + +LI+ LCK  LV+Q  +L  +M   G + + +        
Sbjct: 463 MIQQGCPL------NPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 516

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K  K  EA  LL +M+ +G++P    Y+ + +     G++N  I +FD++       D
Sbjct: 517 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSD 576

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
              Y+ +I+  CK    E A+     M+ +G             VP   T  I I GL  
Sbjct: 577 AVLYNAVISSLCKRGETERAIEFLAYMVSSG------------CVPNESTYTILIRGLAS 624

Query: 257 NGHVLEVMELFPTL 270
            G V E  E+   L
Sbjct: 625 EGFVKEAQEMLTEL 638


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 190/362 (52%), Gaps = 38/362 (10%)

Query: 10  AFG---SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AFG   S   +  +P N +++N +I G C EG++++A +++++M   G  P+  T +TL+
Sbjct: 64  AFGLLKSMSSKGMQP-NLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLL 122

Query: 67  TGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            G  + GN +  L +H EMV NG+        P+V  Y +LI+ +CK R +++  + F +
Sbjct: 123 NGYCKEGNFHQALVIHAEMVRNGV-------SPSVVTYTALINSMCKARNLNRAMEFFDQ 175

Query: 126 MKDKGINAN-----TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M+ +G+  N     TL+    ++  L EA R+L  M + G +P + TY   ++G+C++ +
Sbjct: 176 MRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER 235

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +  A+ +   M  KG  PDV SYS +I+G+C+   ++ A  + +EM+  G          
Sbjct: 236 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG---------- 285

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIF 295
             V P+  T +  I GLC+   + E  +L  + E+ +  L  + F   +LI   C  G  
Sbjct: 286 --VSPDAVTYSSLIQGLCEMRRLTEACDL--SQEMLDMGLPPDEFTYTTLINAYCVEGDL 341

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM-EENGCALDVDTFNT 354
             A  L +++  K  + D V Y++LI+ L K+ + ++   LL  +  E     DV T++T
Sbjct: 342 NKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDV-TYDT 400

Query: 355 LM 356
           L+
Sbjct: 401 LI 402



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 160/341 (46%), Gaps = 34/341 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F     R  RP N+ T+ +LI GF  +G + +A +++ +M   G  P+V T +  I
Sbjct: 169 AMEFFDQMRIRGLRP-NERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI 227

Query: 67  TGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            G      M   L + QEMV  G+        P+V  Y ++I G C+   +D+   +  E
Sbjct: 228 HGHCVLERMEEALGVVQEMVEKGLA-------PDVVSYSTIISGFCRKGELDRAFQMKQE 280

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M +KG++ + +        LC+  +L EA  L + M+  GL P  FTYT L+N YC+ G 
Sbjct: 281 MVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGD 340

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +N A+ L D M  KGF+PD  +YSVLING  K     EA  +        FK I+ E   
Sbjct: 341 LNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLL-------FKLIYEESVP 393

Query: 238 CNVVPETFTCN----------IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
            +V  +T   N            I G C  G + E   +F ++   N +    ++N +I 
Sbjct: 394 SDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIH 453

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
           G C+ G    A  L+ ++     V   V    LI AL KEG
Sbjct: 454 GHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 494



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 142/312 (45%), Gaps = 34/312 (10%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK----PNVFCYGSLIDGLCK 112
           PNV T + LI G    G          E+  G+G FG + +    PNV  Y +LID  CK
Sbjct: 8   PNVYTYNILIRGFCSVG----------ELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCK 57

Query: 113 DRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFT 164
              +D+   L   M  KG+  N +        LC++  + EA  +LE M  +G  P   T
Sbjct: 58  MGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 117

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  LLNGYC  G  + A+ +   M R G  P V +Y+ LIN  CK  N+  AM       
Sbjct: 118 YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAM------- 170

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                + F++M++  + P   T    IDG  + G + E   +   +  S     V  +N+
Sbjct: 171 -----EFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNA 225

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            I G C     E A  +  ++  K L  DVV+Y+ +I    ++G++ +   +   M E G
Sbjct: 226 FIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 285

Query: 345 CALDVDTFNTLM 356
            + D  T+++L+
Sbjct: 286 VSPDAVTYSSLI 297



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 173/358 (48%), Gaps = 37/358 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           IR    P N  T+N LI+GFC  G ++       +M   GC PNV T +TLI    + G 
Sbjct: 2   IRSRVSP-NVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 75  MNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG--- 130
           ++    L + M + GM       +PN+  Y  +I+GLC++  + +  ++  EM  KG   
Sbjct: 61  IDEAFGLLKSMSSKGM-------QPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTP 113

Query: 131 --INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
             +  NTLL   CK+    +A  +   M++ G++P + TYT L+N  C    +N A+  F
Sbjct: 114 DEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFF 173

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           D M  +G  P+  +Y+ LI+G+            SR+ +LN   +I NEM      P   
Sbjct: 174 DQMRIRGLRPNERTYTTLIDGF------------SRQGLLNEAYRILNEMTESGFSPSVV 221

Query: 246 TCNIFIDGLCKNGHVLEVME--LFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASEL 301
           T N FI G C    VLE ME  L    E+    L  ++  ++++I G C+ G  + A ++
Sbjct: 222 TYNAFIHGHC----VLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQM 277

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             ++  K +  D V Y+ LI  L +  ++ +   L   M + G   D  T+ TL+ ++
Sbjct: 278 KQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAY 335



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 130/273 (47%), Gaps = 20/273 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRL 149
           PNV+ Y  LI G C    + +    F EM+  G     +  NTL+   CK  ++ EA  L
Sbjct: 8   PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 67

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L+ M  +G+ P + +Y  ++NG C  G +  A  + + M  KGF PD  +Y+ L+NGYCK
Sbjct: 68  LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCK 127

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
             N  +A+ +  EM+ NG            V P   T    I+ +CK  ++   ME F  
Sbjct: 128 EGNFHQALVIHAEMVRNG------------VSPSVVTYTALINSMCKARNLNRAMEFFDQ 175

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           + I         + +LI G  + G+   A  + N+++       VV YN  IH      +
Sbjct: 176 MRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER 235

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +++   ++  M E G A DV +++T++  F +K
Sbjct: 236 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRK 268



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 104/227 (45%), Gaps = 23/227 (10%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M++  ++P ++TY  L+ G+C VG++   +  F  M R G +P+V +Y+ LI+ YCK   
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 213 VEEAMN--------------VSREMILNGF---------KKIFNEMKLCNVVPETFTCNI 249
           ++EA                +S  +I+NG           +I  EM      P+  T N 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            ++G CK G+  + + +   +  +     V  + +LI   CK      A E F+++  + 
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L  +   Y  LI    ++G + +   +L  M E+G +  V T+N  +
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI 227



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%)

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    V P  +T NI I G C  G + + +  F  +E + C   V  +N+LI   CK G 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A  L   +S K +  ++++YN++I+ L +EG +K+   +L  M   G   D  T+NT
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 355 LMISF 359
           L+  +
Sbjct: 121 LLNGY 125


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 176/368 (47%), Gaps = 37/368 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LIK +   G +  A  +  +M   G +P+V T  T+I  L R G M+  +    E 
Sbjct: 398 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAM----EK 453

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            N M D G +  P+ + Y  LI G C    + + K+L  E+ + G+  + +        L
Sbjct: 454 FNQMIDQGVV--PDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNL 511

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++++A  + +L +  GL+P    Y  L++GYCLVGK+  A+ +FD+M   G  P+V
Sbjct: 512 CKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 571

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI-----------------------FNE 234
             Y  L+NGYCK   ++E +++ REM+  G K                         F+E
Sbjct: 572 VGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 631

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    +     T +I + GL KN    E + LF  L   N ++ +   N++I G  +   
Sbjct: 632 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 691

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A +LF  +S   LV   V Y+I+I  L KEG +++   +  SM+  GC  D    N 
Sbjct: 692 VEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 751

Query: 355 LMISFLQK 362
           ++   L+K
Sbjct: 752 VVRELLKK 759



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 172/382 (45%), Gaps = 37/382 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTL 65
           AL  FG  +R   R ++ +  + L+KGFC      +A   L+ +    GC P+V + + L
Sbjct: 132 ALAFFGQLLRTGLR-VDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNIL 190

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L   G       L + M  G    G +  P+V  Y ++IDG  K+  V++  DLF E
Sbjct: 191 LKSLCNQGKSGQADDLLRMMAEG----GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKE 246

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M  +GI  + +        LCK   + +A   L  M+ +G+ P  +TY  L+ GY   G+
Sbjct: 247 MVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQ 306

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREM 223
              A+ +F  M R+  +PDV + + L+   CK   ++EA +V              S  +
Sbjct: 307 WKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTI 366

Query: 224 ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +LNG+           +F+ M    + P   T N+ I      G + + M +F  +    
Sbjct: 367 MLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHG 426

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            +  V  + ++I   C+ G  + A E FN++  + +V D  AY+ LI      G + K  
Sbjct: 427 VKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAK 486

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L+  +  NG  LD+  F +++
Sbjct: 487 ELISEIMNNGMRLDIVFFGSII 508



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 171/399 (42%), Gaps = 74/399 (18%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           ++N L+K  C +G    A  L++ MA  G  C P+V   +T+I G  + G++N    L +
Sbjct: 186 SYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFK 245

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI------------ 131
           EMV       GI  P++  Y S++  LCK R +D+ +    +M +KG+            
Sbjct: 246 EMVQR-----GI-PPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIY 299

Query: 132 ----------------------------NANTL---LCKKTKLVEANRLLELMMQRGLNP 160
                                         NTL   LCK  K+ EA  + + M  +G NP
Sbjct: 300 GYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNP 359

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            +F+YT +LNGY   G +     LFD M   G  P + +++VLI  Y     +++AM + 
Sbjct: 360 DVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIF 419

Query: 221 REMILNGFK-----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            EM  +G K                       + FN+M    VVP+ +  +  I G C +
Sbjct: 420 NEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTH 479

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G +L+  EL   +  +   L +  F S+I   CK G    A  +F+      L  D V Y
Sbjct: 480 GSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVY 539

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N+L+      G+++K   +  +M   G   +V  + TL+
Sbjct: 540 NMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLV 578



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 125/265 (47%), Gaps = 23/265 (8%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDK------GINANTLL---CKKTKLVEANRLLELMMQR 156
           L+ G C+ +  D+  D+ +    +        + N LL   C + K  +A+ LL +M + 
Sbjct: 154 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEG 213

Query: 157 GL--NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           G   +P +  Y  +++G+   G VN A  LF  M ++G  PD+ +YS +++  CK   ++
Sbjct: 214 GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMD 273

Query: 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +A    R+M+  G            V+P+ +T N  I G    G   E + +F  +   +
Sbjct: 274 KAEAFLRQMVNKG------------VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS 321

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
               V   N+L+   CK+G  + A ++F+ ++ K    DV +Y I+++    +G +    
Sbjct: 322 ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMT 381

Query: 335 YLLLSMEENGCALDVDTFNTLMISF 359
            L   M  +G A  + TFN L+ ++
Sbjct: 382 DLFDLMLGDGIAPVICTFNVLIKAY 406



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 129/281 (45%), Gaps = 27/281 (9%)

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEA 146
           +  P  + Y  L+D   +    +     F ++   G+  + ++        C+  +  EA
Sbjct: 108 VLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEA 167

Query: 147 -NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM--PDVFSYSVL 203
            + LL    + G  P +F+Y  LL   C  GK   A  L   MA  G +  PDV +Y+ +
Sbjct: 168 LDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTV 227

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I+G+ K  +V +A ++ +EM+  G            + P+  T +  +  LCK    ++ 
Sbjct: 228 IDGFFKEGDVNKACDLFKEMVQRG------------IPPDLVTYSSVVHALCK-ARAMDK 274

Query: 264 MELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
            E F   ++ N  +  +   +N+LI G    G ++ A  +F ++  ++++ DVVA N L+
Sbjct: 275 AEAF-LRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLM 333

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +L K G+IK+   +  +M   G   DV ++  ++  +  K
Sbjct: 334 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATK 374



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 123/284 (43%), Gaps = 35/284 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V +N L+ G+C+ G +  A ++   M + G  PNV    TL+ G  + G ++  L L 
Sbjct: 535 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 594

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM+       GI KP+   Y  +IDGL +       K  F EM + GI  N        
Sbjct: 595 REMLQ-----KGI-KPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVL 648

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K     EA  L + +    +   I T   ++ G     +V  A  LF S++R G +
Sbjct: 649 RGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLV 708

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P   +YS++I    K   VEEA            + +F+ M+     P++   N  +  L
Sbjct: 709 PCAVTYSIMITNLIKEGLVEEA------------EDMFSSMQNAGCEPDSRLLNHVVREL 756

Query: 255 CKNGHVL-------EVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            K   ++       ++ E   +LE     L V++F+S  +G C+
Sbjct: 757 LKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSS--KGTCR 798



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 13/206 (6%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R L+P  +TY  L++      +  +A+A F  + R G   D    S L+ G+C+    +E
Sbjct: 107 RVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDE 166

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN- 274
           A+++           + +       VP+ F+ NI +  LC  G   +  +L   +     
Sbjct: 167 ALDI-----------LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGT 215

Query: 275 -CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            C   V  +N++I G  K G    A +LF ++  + +  D+V Y+ ++HAL K   + K 
Sbjct: 216 VCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKA 275

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
              L  M   G   D  T+N L+  +
Sbjct: 276 EAFLRQMVNKGVLPDNWTYNNLIYGY 301


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 165/356 (46%), Gaps = 46/356 (12%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   ++  Y P N +TF +LIKG C++G I  A     K+   G + N  +  TLI
Sbjct: 141 AFSVFAKILKMGYNP-NTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLI 199

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G     L L + +       G + +PNV  Y ++IDG+CKD+ V+   DL+ EM
Sbjct: 200 DGLCKVGETRAALDLLRRVD------GKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEM 253

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                                      + +G++P + TY+ L++G+  VGK+  A+ LF+
Sbjct: 254 ---------------------------VSKGISPNVVTYSALISGFFTVGKLKDAVDLFN 286

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M  +   PDV+++++L++ +CK+  +  A+            K+ +EM      P   T
Sbjct: 287 KMISENIKPDVYTFNILVDVFCKSGKISYAL------------KLVDEMHDRGQPPNIVT 334

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            +  +D LCK   V + + L   L+       +  +  LI G C  G  E A  +F  L 
Sbjct: 335 YSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLL 394

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            K     VV Y ++ +   K+G   + + LL  MEENGC  D  T+  + +S  +K
Sbjct: 395 VKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKK 450



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 14/208 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+++LI GF   G ++DA  L  KM +   +P+V T + L+    ++G ++  LKL 
Sbjct: 261 NVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKL- 319

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
              V+ M D G    PN+  Y S++D LCK   VD+   L  ++KD+GI  N        
Sbjct: 320 ---VDEMHDRGQ--PPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILI 374

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC   KL +A  + E ++ +G +  + TY  +  G+C  G  + A AL   M   G +
Sbjct: 375 DGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCI 434

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSRE 222
           PD  +Y ++     K    + A  + RE
Sbjct: 435 PDAKTYELIKLSLFKKGENDMAEKLHRE 462



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 35/293 (11%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLF-----MEMKDKGINANTLLCKKTKLVEANRLLE 151
           K N+  Y S       +  VD    LF            I  N +L    K    + +L 
Sbjct: 49  KINLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLY 108

Query: 152 L---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L   M  RG+ P +     L+N +C +G +  A ++F  + + G+ P+  +++ LI G C
Sbjct: 109 LSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLC 168

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMK-------LCN------------------VVPE 243
               + +A+N   +++  GF+  FN++        LC                   V P 
Sbjct: 169 LKGQIHQALNFHDKLVALGFQ--FNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPN 226

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
               +  IDG+CK+ HV +  +L+  +        V  +++LI G    G  + A +LFN
Sbjct: 227 VVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFN 286

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K+  +N+  DV  +NIL+    K G+I     L+  M + G   ++ T+++++
Sbjct: 287 KMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSIL 339


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 183/414 (44%), Gaps = 82/414 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +L+ G C EG + +A  L+ +M   G +PN  T  T++ G+ + G+    L L 
Sbjct: 181 NVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNL- 239

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
              +  M +   I  PNV  Y ++IDGL KD       +LF+EM++K I  + +      
Sbjct: 240 ---LRKMEEVSHII-PNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMI 295

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM------ 188
              C   +  +A +LL+ M++R +NP + T++ L+N +   GK   A  L+D M      
Sbjct: 296 NGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSII 355

Query: 189 -----------------------------ARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
                                          KG  PD+ +++ LI GYC+   V++ + +
Sbjct: 356 PSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKL 415

Query: 220 SREMI-----------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             EM                        LN  + +  EM    V P   TCN  +DGLC 
Sbjct: 416 LHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCD 475

Query: 257 NGHVLEVMELFPTLEISN-----------CELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           NG + + +E+F  ++ S             E  V+ +N LI G    G F  A EL+ ++
Sbjct: 476 NGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEM 535

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             + +V D + Y+ +I  L K+ ++ +   +  SM     + DV TFNTL+  +
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGY 589



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 170/381 (44%), Gaps = 48/381 (12%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N +I GFC+ G   DA QL+++M      P+V T   LI    + G      +L+ E
Sbjct: 289 VTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDE 348

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
           M+           P+   Y S+IDG CK   +D  + +F     KG     I  NTL+  
Sbjct: 349 MLPRS------IIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAG 402

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+  ++ +  +LL  M + GL     TYT L++G+C VG +N A  L   M   G  P+
Sbjct: 403 YCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPN 462

Query: 197 VFSYSVLINGYCKNFNVEEA-----------MNVSREMILNGFK---------------- 229
           V + + L++G C N  +++A           M++      NG +                
Sbjct: 463 VVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINE 522

Query: 230 -------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                  +++ EM    +VP+T T +  IDGLCK   + E  ++F ++   +    V  F
Sbjct: 523 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTF 582

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N+LI G CK G+ +   ELF ++  + +VAD + Y  LI+   K   I     +   M  
Sbjct: 583 NTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMIS 642

Query: 343 NGCALDVDTFNTLMISFLQKE 363
           +G   D  T   ++     KE
Sbjct: 643 SGVYPDTITIRNMLTGLWSKE 663



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 138/265 (52%), Gaps = 27/265 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+ +LI GFC  G++  A  L+++M + G  PNV TC+TL+ GL   G +   L++ 
Sbjct: 427 NTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMF 486

Query: 83  QEM------VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           + M      ++    F G+ +P+V  Y  LI GL  +    + ++L+ EM  +GI  +T+
Sbjct: 487 KAMQKSKMDIDASRPFNGV-EPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTI 545

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LCK+++L EA ++ + M  +  +P + T+  L+ GYC  G V+  + LF  M
Sbjct: 546 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEM 605

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            ++G + D  +Y  LI G+ K  N++ A+++ +EMI +G            V P+T T  
Sbjct: 606 GQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSG------------VYPDTITIR 653

Query: 249 IFIDGLCKNGHVLEVMELFPTLEIS 273
             + GL     +   + +   L++S
Sbjct: 654 NMLTGLWSKEELERAVAMLEDLQMS 678



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 135/281 (48%), Gaps = 21/281 (7%)

Query: 88  GMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTL---LCK 139
            +  FG I K    P V  + +L+ GLC +  + +  DLF +M K   +   TL   LC+
Sbjct: 135 ALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMCKPNVVTFTTLMNGLCR 194

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR-KGFMPDVF 198
           + ++VEA  LL+ M++ GL P   TY  +++G C +G    A+ L   M      +P+V 
Sbjct: 195 EGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVV 254

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            Y+ +I+G  K+    +A N            +F EM+   + P+  T N  I+G C +G
Sbjct: 255 IYNTIIDGLWKDGRHSDAHN------------LFIEMQEKEIFPDIVTYNCMINGFCISG 302

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              +  +L   +        V  F++LI    K G F  A EL++++  ++++   V Y+
Sbjct: 303 RWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYS 362

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +I    K+ ++    ++       GC+ D+ TFNTL+  +
Sbjct: 363 SMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGY 403


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 166/349 (47%), Gaps = 26/349 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+  L++  C      +A  + + MA  GC PNV +   LI GL R   ++   +L 
Sbjct: 51  NTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELL 110

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-----KDKGINANTLL 137
            EM++G       ++PNV  YGSL+ GLCK   + +  DLF  M        G+  N L+
Sbjct: 111 NEMIDGG------HQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLI 164

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               KK  + EA RL E M+++G  P +FTY  LL+G+   G+     +LF  M R+G +
Sbjct: 165 DGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCV 224

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P++F+++ L++G+CK  ++ EA             ++F EM+     P+  + N  + G+
Sbjct: 225 PNIFTFNNLLDGFCKMGDMVEA------------HRLFLEMRSLGCPPDVVSYNTLMRGM 272

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G   E   L   +  S     +  +N LI G  K G  + A +LF ++    L  D 
Sbjct: 273 CSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDA 332

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +Y+ +I  L + G++     +   M  NG A D      L+I   + E
Sbjct: 333 FSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGE 381



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 160/323 (49%), Gaps = 28/323 (8%)

Query: 14  FIRRCYR--PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71
           F R  YR  P + V +N LI GF  +G++ +A +L ++M   GC P V T ++L++G  R
Sbjct: 145 FSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSR 204

Query: 72  TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG- 130
            G       L ++M+      G +  PN+F + +L+DG CK   + +   LF+EM+  G 
Sbjct: 205 KGEFGRVQSLFKDMLRQ----GCV--PNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258

Query: 131 ----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
               ++ NTL+   C K K  EA RLL  M++ G+ P I +Y  L++GY   G ++ AI 
Sbjct: 259 PPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIK 318

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           LF  + + G  PD FSYS +I+  C+   V  A  V ++MI NG              P+
Sbjct: 319 LFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANG------------SAPD 366

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
                  + GLC+   + E  ELF  +    C   +  +N L+   CK    +   E+F+
Sbjct: 367 AAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFH 426

Query: 304 KLSCKNLVADVVAYNILIHALGK 326
           +L+ +    DV    +++  L +
Sbjct: 427 ELTERGFSPDVEISKVILETLRR 449



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 151/340 (44%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +++N L++     G           M   GC PN  T   L+  L +           + 
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEA----RS 73

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +  GM   G    PNVF Y  LI GLC+ + VD+  +L  EM D G   N +        
Sbjct: 74  VFRGMAAQG--CSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSG 131

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  KL EA  L   M+ RG  P    Y  L++G+   G +  A  LF+ M  KG +P 
Sbjct: 132 LCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPT 191

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           VF+Y+ L++G+            SR+      + +F +M     VP  FT N  +DG CK
Sbjct: 192 VFTYNSLLSGF------------SRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G ++E   LF  +    C   V  +N+L+RG C  G    A  L  ++    +  D+V+
Sbjct: 240 MGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVS 299

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YNILI    K G +     L   + ++G   D  +++T++
Sbjct: 300 YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTII 339



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 155/342 (45%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ SL+ G C  G +++A  L  +M   GC P+    + LI G  + G+M    +L 
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM+    + G I  P VF Y SL+ G  +     + + LF +M  +G   N        
Sbjct: 181 EEML----EKGCI--PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLL 234

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   +VEA+RL   M   G  P + +Y  L+ G C  GK + A  L   M R G  
Sbjct: 235 DGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVG 294

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ SY++LI+GY K+  ++ A+            K+F E+    + P+ F+ +  ID L
Sbjct: 295 PDIVSYNILIDGYSKSGALDHAI------------KLFYEIPKSGLEPDAFSYSTIIDCL 342

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G V     +F  +  +       +   L+ G C+      + ELF  +     V  +
Sbjct: 343 CRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLI 402

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             YN+L++ L K  +      +   + E G + DV+    ++
Sbjct: 403 PEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVIL 444



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 118/269 (43%), Gaps = 20/269 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           Y      Y  L++ L K    D     + +M   G   NT         LC+  +  EA 
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +   M  +G +P +F+Y+ L+ G C   KV+ A  L + M   G  P+V +Y  L++G 
Sbjct: 73  SVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK   ++EA+++   M+  G              P+    N+ IDG  K G + E   LF
Sbjct: 133 CKMGKLKEAVDLFSRMVYRG------------CPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +    C   V  +NSL+ G  + G F     LF  +  +  V ++  +N L+    K 
Sbjct: 181 EEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKM 240

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
           G + + + L L M   GC  DV ++NTLM
Sbjct: 241 GDMVEAHRLFLEMRSLGCPPDVVSYNTLM 269



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 12/208 (5%)

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           Q   N    +Y  LL      G+ +     ++ M   G +P+ ++Y  L+   C+    E
Sbjct: 10  QVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFE 69

Query: 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           EA +V R M   G          C+  P  F+ +I I GLC+   V E  EL   +    
Sbjct: 70  EARSVFRGMAAQG----------CS--PNVFSYSILIAGLCRGQKVDEAAELLNEMIDGG 117

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            +  V  + SL+ G CK G  + A +LF+++  +    D V YN+LI    K+G + +  
Sbjct: 118 HQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAY 177

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQK 362
            L   M E GC   V T+N+L+  F +K
Sbjct: 178 RLFEEMLEKGCIPTVFTYNSLLSGFSRK 205



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 100/204 (49%), Gaps = 14/204 (6%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++N+L++G C +G   +A +L+++M   G  P++ + + LI G  ++G ++  +K
Sbjct: 259 PPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIK 318

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  E+        G+ +P+ F Y ++ID LC+   V     +F +M   G   +      
Sbjct: 319 LFYEIPKS-----GL-EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIP 372

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC+  +L E+  L + M++    P+I  Y  L+   C   + +    +F  +  +G
Sbjct: 373 LVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERG 432

Query: 193 FMPDVFSYSVLINGYCKNFNVEEA 216
           F PDV    V++    ++ + E A
Sbjct: 433 FSPDVEISKVILETLRRSDDKEAA 456


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 176/368 (47%), Gaps = 37/368 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LIK +   G +  A  +  +M   G +P+V T  T+I  L R G M+  +    E 
Sbjct: 398 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAM----EK 453

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            N M D G +  P+ + Y  LI G C    + + K+L  E+ + G+  + +        L
Sbjct: 454 FNQMIDQGVV--PDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNL 511

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++++A  + +L +  GL+P    Y  L++GYCLVGK+  A+ +FD+M   G  P+V
Sbjct: 512 CKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 571

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI-----------------------FNE 234
             Y  L+NGYCK   ++E +++ REM+  G K                         F+E
Sbjct: 572 VGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 631

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    +     T +I + GL KN    E + LF  L   N ++ +   N++I G  +   
Sbjct: 632 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 691

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A +LF  +S   LV   V Y+I+I  L KEG +++   +  SM+  GC  D    N 
Sbjct: 692 VEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 751

Query: 355 LMISFLQK 362
           ++   L+K
Sbjct: 752 VVRELLKK 759



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 174/382 (45%), Gaps = 37/382 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTL 65
           AL  FG  +R   R ++ +  + L+KGFC      +A   L+ +    GC P+V + + L
Sbjct: 132 ALAFFGQLLRTGLR-VDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNIL 190

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L   G       L + M  G    G +  P+V  Y ++IDG  K+  V++  DLF E
Sbjct: 191 LKSLCNQGKSGQADDLLRMMAEG----GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKE 246

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M  +GI  + +        LCK   + +A   L  M+ +G+ P  +TY  L+ GY   G+
Sbjct: 247 MVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQ 306

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREM 223
              A+ +F  M R+  +PDV + + L+   CK   ++EA +V              S  +
Sbjct: 307 WKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTI 366

Query: 224 ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +LNG+           +F+ M    + P+ +T N+ I      G + + M +F  +    
Sbjct: 367 MLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHG 426

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            +  V  + ++I   C+ G  + A E FN++  + +V D  AY+ LI      G + K  
Sbjct: 427 VKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAK 486

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L+  +  NG  LD+  F +++
Sbjct: 487 ELISEIMNNGMRLDIVFFGSII 508



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 173/399 (43%), Gaps = 74/399 (18%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           ++N L+K  C +G    A  L++ MA  G  C P+V   +T+I G  + G++N    L +
Sbjct: 186 SYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFK 245

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI------------ 131
           EMV       GI  P++  Y S++  LCK R +D+ +    +M +KG+            
Sbjct: 246 EMVQR-----GI-PPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIY 299

Query: 132 ----------------------------NANTL---LCKKTKLVEANRLLELMMQRGLNP 160
                                         NTL   LCK  K+ EA  + + M  +G NP
Sbjct: 300 GYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNP 359

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            +F+YT +LNGY   G +     LFD M   G  PD+++++VLI  Y     +++AM + 
Sbjct: 360 DVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIF 419

Query: 221 REMILNGFK-----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            EM  +G K                       + FN+M    VVP+ +  +  I G C +
Sbjct: 420 NEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTH 479

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G +L+  EL   +  +   L +  F S+I   CK G    A  +F+      L  D V Y
Sbjct: 480 GSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVY 539

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N+L+      G+++K   +  +M   G   +V  + TL+
Sbjct: 540 NMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLV 578



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 23/265 (8%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDK------GINANTLL---CKKTKLVEANRLLELMMQR 156
           L+ G C+ +  D+  D+ +    +        + N LL   C + K  +A+ LL +M + 
Sbjct: 154 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEG 213

Query: 157 GL--NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           G   +P +  Y  +++G+   G VN A  LF  M ++G  PD+ +YS +++  CK   ++
Sbjct: 214 GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMD 273

Query: 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +A    R+M+  G            V+P+ +T N  I G    G   E + +F  +   +
Sbjct: 274 KAEAFLRQMVNKG------------VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS 321

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
               V   N+L+   CK+G  + A ++F+ ++ K    DV +Y I+++    +G +    
Sbjct: 322 ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMT 381

Query: 335 YLLLSMEENGCALDVDTFNTLMISF 359
            L   M  +G A D+ TFN L+ ++
Sbjct: 382 DLFDLMLGDGIAPDIYTFNVLIKAY 406



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 129/281 (45%), Gaps = 27/281 (9%)

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK--TKLVEANR---L 149
           +  P  + Y  L+D   +    +     F ++   G+  + ++         EA R    
Sbjct: 108 VLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEA 167

Query: 150 LELMMQR----GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM--PDVFSYSVL 203
           L++++ R    G  P +F+Y  LL   C  GK   A  L   MA  G +  PDV +Y+ +
Sbjct: 168 LDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTV 227

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I+G+ K  +V +A ++ +EM+  G            + P+  T +  +  LCK    ++ 
Sbjct: 228 IDGFFKEGDVNKACDLFKEMVQRG------------IPPDLVTYSSVVHALCK-ARAMDK 274

Query: 264 MELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
            E F   ++ N  +  +   +N+LI G    G ++ A  +F ++  ++++ DVVA N L+
Sbjct: 275 AEAF-LRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLM 333

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +L K G+IK+   +  +M   G   DV ++  ++  +  K
Sbjct: 334 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATK 374



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 123/284 (43%), Gaps = 35/284 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V +N L+ G+C+ G +  A ++   M + G  PNV    TL+ G  + G ++  L L 
Sbjct: 535 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 594

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM+       GI KP+   Y  +IDGL +       K  F EM + GI  N        
Sbjct: 595 REMLQ-----KGI-KPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVL 648

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K     EA  L + +    +   I T   ++ G     +V  A  LF S++R G +
Sbjct: 649 RGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLV 708

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P   +YS++I    K   VEEA            + +F+ M+     P++   N  +  L
Sbjct: 709 PCAVTYSIMITNLLKEGLVEEA------------EDMFSSMQNAGCEPDSRLLNHVVREL 756

Query: 255 CKNGHVL-------EVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            K   ++       ++ E   +LE     L V++F+S  +G C+
Sbjct: 757 LKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSS--KGTCR 798



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 13/206 (6%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R L+P  +TY  L++      +  +A+A F  + R G   D    S L+ G+C+    +E
Sbjct: 107 RVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDE 166

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN- 274
           A+++           + +       VP+ F+ NI +  LC  G   +  +L   +     
Sbjct: 167 ALDI-----------LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGT 215

Query: 275 -CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            C   V  +N++I G  K G    A +LF ++  + +  D+V Y+ ++HAL K   + K 
Sbjct: 216 VCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKA 275

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
              L  M   G   D  T+N L+  +
Sbjct: 276 EAFLRQMVNKGVLPDNWTYNNLIYGY 301


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 171/354 (48%), Gaps = 28/354 (7%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           + C R  N+V++ +LI G C  G I +A +L   M    C P V T   LI  L  +G  
Sbjct: 258 KGCQR--NEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRK 315

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----- 130
              L L  EM     +      PNV  Y  LIDGLCK+  +D+ + +  EM +KG     
Sbjct: 316 VEALNLFNEMKEKGCE------PNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSV 369

Query: 131 INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +  N L+   CK+  + +A  +L+LM      P   TY  L+ G C   KV+ A+AL + 
Sbjct: 370 VTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNK 429

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +   P + +Y+ LI+G CK  ++E A  +   M  NG            +VP+ +T 
Sbjct: 430 MLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENG------------LVPDQWTY 477

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           ++FID LCK G V E   LF +++    +    I+ +LI G CK G  ++A  L  ++  
Sbjct: 478 SVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLN 537

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
              + +   YN+LI  L KE ++K+ + L+  M   G    V T+  L+   L+
Sbjct: 538 DACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLK 591



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 166/367 (45%), Gaps = 37/367 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  LI      G   +A  L  +M   GC PNV T   LI GL +   M+   K    M
Sbjct: 301 TYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARK----M 356

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTL------L 137
           ++ M + G I  P+V  Y +LIDG CK+ ++D   ++   ME    G N  T       L
Sbjct: 357 LSEMSEKGLI--PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGL 414

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CKK K+ +A  LL  M++R L+P + TY  L++G C V  +  A  L   M   G +PD 
Sbjct: 415 CKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQ 474

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM--KLCNV------------ 240
           ++YSV I+  CK   VEEA  +   +   G K    I+  +    C V            
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 241 ------VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                 +P ++T N+ I+GLCK   + E   L   +     +  V  +  LI    K G 
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGA 594

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           F+ A ++FN +       DV  Y   +HA   +G +++ + ++  M E G   D+ T+  
Sbjct: 595 FDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654

Query: 355 LMISFLQ 361
           L+  + +
Sbjct: 655 LIDGYAR 661



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 151/315 (47%), Gaps = 27/315 (8%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           PN+ T + ++ G  + GN+ +  +L+   +   G       P+ F Y SLI G C+++ V
Sbjct: 192 PNIYTFNAMVNGYCKIGNV-VEAELYASKIVQAG-----LHPDTFTYTSLILGHCRNKGV 245

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           D   ++F+ M  KG   N +        LC+  ++ EA +L   M +    P + TYT L
Sbjct: 246 DNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVL 305

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           +      G+   A+ LF+ M  KG  P+V +Y+VLI+G CK   ++EA            
Sbjct: 306 IYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEA------------ 353

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           +K+ +EM    ++P   T N  IDG CK G + +  E+   +E ++C      +N LI G
Sbjct: 354 RKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICG 413

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            CK      A  L NK+  + L   ++ YN LIH   K   ++    LL  M ENG   D
Sbjct: 414 LCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPD 473

Query: 349 VDTFNTLMISFLQKE 363
             T+ ++ I  L KE
Sbjct: 474 QWTY-SVFIDTLCKE 487



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 156/329 (47%), Gaps = 26/329 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI G+C EG I DA +++  M +  C PN  T + LI GL +   ++  + L  +
Sbjct: 370 VTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNK 429

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+           P++  Y SLI G CK   ++    L   M + G+  +          
Sbjct: 430 MLERK------LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDT 483

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK+ ++ EA  L + +  +G+      YT L++GYC VGK++VA +L + M     +P+
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            ++Y+VLI G CK   ++EA ++  +M+  G K            P   T  I I  + K
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK------------PTVVTYTILIGEMLK 591

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G     +++F  +     +  V  + + +      G+ E   ++  K++ + ++ D+V 
Sbjct: 592 DGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVT 651

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGC 345
           Y +LI    + G   +    L  M + GC
Sbjct: 652 YTVLIDGYARLGLTHRAFDFLKCMVDTGC 680



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 139/285 (48%), Gaps = 22/285 (7%)

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           +N  G+F   +KP + CY +++  L K  L+D+ K +++E+ +  I+ N           
Sbjct: 147 MNADGEFK--FKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGY 204

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK   +VEA      ++Q GL+P  FTYT L+ G+C    V+ A  +F  M +KG   + 
Sbjct: 205 CKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNE 264

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY+ LI+G C+   + EA+            K+F +M   N  P   T  + I  L  +
Sbjct: 265 VSYTNLIHGLCEAGRINEAL------------KLFADMTEDNCCPTVRTYTVLIYALSGS 312

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G  +E + LF  ++   CE  V  +  LI G CK    + A ++ +++S K L+  VV Y
Sbjct: 313 GRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTY 372

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N LI    KEG I     +L  ME N C  +  T+N L+    +K
Sbjct: 373 NALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKK 417



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 152/353 (43%), Gaps = 51/353 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N LI+G C E  +++AS LV KM T G +P V T   LI  + + G  +  LK+ 
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVF 602

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             MV+ +G     Y+P+V  Y + +       ++++  D+  +M ++GI           
Sbjct: 603 NHMVS-LG-----YQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGI----------- 645

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                            P + TYT L++GY  +G  + A      M   G  P ++  S+
Sbjct: 646 ----------------LPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSI 689

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFN------EMKLCNVVPE---TFTCNIF--- 250
           LI    KN + E  M  +R  I  G   + N       +KL   + E   T   +I+   
Sbjct: 690 LI----KNLSHENRMKETRSEI--GIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGAL 743

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           I G C+   + E   L   ++        +I+NSL+  CCK G++  A  L + +    L
Sbjct: 744 IAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGL 803

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +  + +Y +L+  L  EG  +K   +   +   G   D   +  L+   L+++
Sbjct: 804 LPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRD 856



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 128/309 (41%), Gaps = 47/309 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           AL  F   +   Y+P  DV T+ + +  +  +G + +   ++ KM   G  P++ T   L
Sbjct: 598 ALKVFNHMVSLGYQP--DVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVL 655

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD---- 121
           I G  R G  +      + MV    D G   KP+++    LI  L  +  + +T+     
Sbjct: 656 IDGYARLGLTHRAFDFLKCMV----DTGC--KPSLYIVSILIKNLSHENRMKETRSEIGI 709

Query: 122 --------------LFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLN 159
                         LF +M + G   +  +        C++ +L EA  L+  M +RG++
Sbjct: 710 DSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMS 769

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P    Y  LL+  C +G    A+ L D+M   G +P + SY +L+ G     + E+A   
Sbjct: 770 PSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKA--- 826

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                    K +F+ +  C    +     + IDGL K   V E  EL   +E   C+   
Sbjct: 827 ---------KAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNP 877

Query: 280 EIFNSLIRG 288
             ++ LI G
Sbjct: 878 LTYSLLIEG 886


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 167/369 (45%), Gaps = 37/369 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ +L+ G C         +++ +M  FG  P+      L+ GLR+ GN+        ++
Sbjct: 287 TYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAF----DL 342

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           VN +  FG    P++F Y +LI+ +CKD  +D+ + LF  M  KG+  N +         
Sbjct: 343 VNKVKKFG--VAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSF 400

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ KL  A   L  M + G+   ++ Y+ L++G+C +GK+  A +LFD M   G  P+V
Sbjct: 401 CKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNV 460

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNE 234
             Y+ LI+GYCK   +  A  +  EM   G                         K+F E
Sbjct: 461 VIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGE 520

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M   NV+P   T N+ I+G CK G+ +   EL   +           +  LI G C  G 
Sbjct: 521 MVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGR 580

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A E  N L  +    + + ++ L+H   KEG++         M   G A+D+  ++ 
Sbjct: 581 VSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSV 640

Query: 355 LMISFLQKE 363
           L+   L+++
Sbjct: 641 LIYGILRQQ 649



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 154/345 (44%), Gaps = 32/345 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           NDVT++ LI  FC  G +  A   + KM   G +  V    +LI+G  + G +     L 
Sbjct: 389 NDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLF 448

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM+ NG+       KPNV  Y SLI G CK+  +     L+ EM  KGI+ NT      
Sbjct: 449 DEMIANGL-------KPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTAL 501

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC   ++ EAN+L   M++  + P   TY  L+ G+C  G    A  L D M  KG 
Sbjct: 502 ISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGL 561

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI--LNGFKKIFNEMKLCNVVPETFTCNIFI 251
           +PD ++Y  LI+G C    V EA    RE +  L G ++  NEM            +  +
Sbjct: 562 VPDTYTYRPLISGLCSTGRVSEA----REFMNDLQGEQQKLNEMCF----------SALL 607

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
            G CK G + + ++    +      + +  ++ LI G  +        +L  ++  + L 
Sbjct: 608 HGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLR 667

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            D V Y  +I A  K G +K    L   M   GC  +V T+  L+
Sbjct: 668 PDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALI 712



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 173/358 (48%), Gaps = 36/358 (10%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           FG  +     P N+VT+N LI+G C EGN   A +L+ +M   G  P+  T   LI+GL 
Sbjct: 518 FGEMVEWNVIP-NEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLC 576

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
            TG ++      +E +N +   G   K N  C+ +L+ G CK+  +D   D   EM  +G
Sbjct: 577 STGRVSEA----REFMNDLQ--GEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRG 630

Query: 131 INANTLLCKKTK----LVEANR-----LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           + A  L+C        L + +R     LL+ M  +GL P    YT +++     G + +A
Sbjct: 631 V-AMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMA 689

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             L+D M  +G +P+V +Y+ LING CK   +++A  + REM+ +            N +
Sbjct: 690 FGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLAS------------NSL 737

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE---IFNSLIRGCCKFGIFEIA 298
           P   T   F+D L   G++ + ++L   L     E F+     +N LIRG CK G  + A
Sbjct: 738 PNQNTYACFLDYLTSEGNIEKAIQLHDVL----LEGFLANTVTYNILIRGFCKLGRIQEA 793

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +E+   +    +  D ++Y+ +I+   + G +K+   L  SM   G   D   +N L+
Sbjct: 794 AEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLI 851



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 171/417 (41%), Gaps = 91/417 (21%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A   F   I    +P N V + SLI G+C EG + +A +L  +M   G  PN  T 
Sbjct: 440 KLRAAKSLFDEMIANGLKP-NVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTF 498

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI+GL     M    KL  EMV    ++  I  PN   Y  LI+G CK+         
Sbjct: 499 TALISGLCHANRMAEANKLFGEMV----EWNVI--PNEVTYNVLIEGHCKE--------- 543

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                      NT        V A  LL+ M+++GL P  +TY PL++G C  G+V+ A 
Sbjct: 544 ----------GNT--------VRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAR 585

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK------------- 229
              + +  +    +   +S L++GYCK   +++A++  REM+  G               
Sbjct: 586 EFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGI 645

Query: 230 ----------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                      +  +M    + P+       ID   K G++     L+  +    C   V
Sbjct: 646 LRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNV 705

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKN------------------------------ 309
             + +LI G CK G+ + A  L  ++   N                              
Sbjct: 706 VTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDV 765

Query: 310 ----LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
                +A+ V YNILI    K G+I++   +L++M ++G + D  +++T++  + ++
Sbjct: 766 LLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRR 822



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 159/392 (40%), Gaps = 65/392 (16%)

Query: 11  FGSFIRRCYRPLNDVT---FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           F SF+   YR  N  T   F+ LI+ +       D   +V+ M   G  P + T   ++ 
Sbjct: 130 FESFLD-SYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLN 188

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           GL R     + L L  E+V+      G+ +P+V+ Y +++  LC+ +   + +++   M+
Sbjct: 189 GLIRIRQFRMALHLFDEIVSS-----GL-RPDVYVYTAVVRSLCELKDFIRAREVIGRME 242

Query: 128 DKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV---- 175
             G + +          LCK  ++ EA  +  L+  +GL   + TY  L+ G C V    
Sbjct: 243 SSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFE 302

Query: 176 -------------------------------GKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                                          G +  A  L + + + G  P +F Y+ LI
Sbjct: 303 AGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALI 362

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           N  CK+  ++EA            + +FN M    + P   T +I ID  CK G +   +
Sbjct: 363 NSMCKDGKLDEA------------ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVAL 410

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                +     +  V  ++SLI G CK G    A  LF+++    L  +VV Y  LI   
Sbjct: 411 HFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGY 470

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            KEG++     L   M   G + +  TF  L+
Sbjct: 471 CKEGELHNAFRLYHEMTGKGISPNTYTFTALI 502



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 111/247 (44%), Gaps = 34/247 (13%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP ++V + ++I      GN++ A  L   M + GC PNV T   LI GL + G M+   
Sbjct: 667 RP-DNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAE 725

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD---QTKDLFMEMKDKGINANTL 136
            L +EM+           PN   Y   +D L  +  ++   Q  D+ +E    G  ANT+
Sbjct: 726 LLCREMLASNS------LPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE----GFLANTV 775

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                    CK  ++ EA  +L  M+  G++P   +Y+ ++  YC  G +  AI L++SM
Sbjct: 776 TYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESM 835

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             +G  PD  +Y+ LI G C    + +A  +  +M+  G K            P   T N
Sbjct: 836 LNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVK------------PNRATYN 883

Query: 249 IFIDGLC 255
             I G C
Sbjct: 884 SLIHGTC 890



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 12/210 (5%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           ++ LMM  G+ P I T + +LNG   + +  +A+ LFD +   G  PDV+ Y+ ++   C
Sbjct: 167 VVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLC 226

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           +  +   A  V   M  +G          C++   T+  N+FI GLCKN  V E +E+  
Sbjct: 227 ELKDFIRAREVIGRMESSG----------CDLSVATY--NVFIRGLCKNQRVWEAVEIKN 274

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            L        V  + +L+ G CK   FE   E+ N++     V    A + L+  L K+G
Sbjct: 275 LLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKG 334

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            I     L+  +++ G A  +  +N L+ S
Sbjct: 335 NIGSAFDLVNKVKKFGVAPSLFVYNALINS 364



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 50/200 (25%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI G C  G +  A  L ++M      PN  T    +  L   GN+   ++LH
Sbjct: 704 NVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLH 763

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             ++ G       +  N   Y  LI G CK   + +  ++ + M D GI+ + +      
Sbjct: 764 DVLLEG-------FLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTII 816

Query: 137 --LCKKTKLVEANRLLELMMQRGLNP-------VIF------------------------ 163
              C++  L EA +L E M+ RG+NP       +I+                        
Sbjct: 817 YEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVK 876

Query: 164 ----TYTPLLNGYCLVGKVN 179
               TY  L++G CL+  V+
Sbjct: 877 PNRATYNSLIHGTCLMSSVS 896



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 29/128 (22%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N LI+GFC  G I++A++++  M   G  P+  +  T+I    R G++   +KL 
Sbjct: 773 NTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLW 832

Query: 83  QEMVNG------------------MGDFGGIY-----------KPNVFCYGSLIDGLCKD 113
           + M+N                    G+    +           KPN   Y SLI G C  
Sbjct: 833 ESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLM 892

Query: 114 RLVDQTKD 121
             V  T D
Sbjct: 893 SSVSSTAD 900



 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 12/174 (6%)

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
           RK        + +LI  Y +N    + + V R M+             C ++P+  T + 
Sbjct: 138 RKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMD------------CGILPQIRTLSG 185

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            ++GL +       + LF  +  S     V ++ +++R  C+   F  A E+  ++    
Sbjct: 186 VLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSG 245

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               V  YN+ I  L K  ++ +   +   +   G   DV T+ TL++   + E
Sbjct: 246 CDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVE 299


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/352 (31%), Positives = 169/352 (48%), Gaps = 28/352 (7%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C R  N+V++ +LI G C  G I +A +L   M    C P V T   LI  L  +G    
Sbjct: 260 CQR--NEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVE 317

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----IN 132
            L L  EM     +      PNV  Y  LIDGLCK+  +D+ + +  EM +KG     + 
Sbjct: 318 ALNLFNEMKEKGCE------PNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVT 371

Query: 133 ANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
            N L+   CK+  + +A  +L+LM      P   TY  L+ G C   KV+ A+AL + M 
Sbjct: 372 YNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKML 431

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
            +   P + +Y+ LI+G CK  ++E A  +   M  NG             VP+ +T ++
Sbjct: 432 ERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGL------------VPDQWTYSV 479

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           FID LCK G V E   LF +++    +    I+ +LI G CK G  ++A  L  ++    
Sbjct: 480 FIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA 539

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            + +   YN+LI  L KE ++K+ + L+  M   G    V T+  L+   L+
Sbjct: 540 CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLK 591



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 165/365 (45%), Gaps = 37/365 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  LI      G   +A  L  +M   GC PNV T   LI GL +   M+   K    M
Sbjct: 301 TYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARK----M 356

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTL------L 137
           ++ M + G I  P+V  Y +LIDG CK+ ++D   ++   ME    G N  T       L
Sbjct: 357 LSEMSEKGLI--PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGL 414

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CKK K+ +A  LL  M++R L+P + TY  L++G C V  +  A  L   M   G +PD 
Sbjct: 415 CKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQ 474

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM--KLCNV------------ 240
           ++YSV I+  CK   VEEA  +   +   G K    I+  +    C V            
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 241 ------VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                 +P ++T N+ I+GLCK   + E   L   +     +  V  +  LI    K G 
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGA 594

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           F+ A ++FN +       DV  Y   +HA   +G +++ + ++  M E G   D+ T+  
Sbjct: 595 FDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654

Query: 355 LMISF 359
           L+  +
Sbjct: 655 LIDGY 659



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 147/308 (47%), Gaps = 26/308 (8%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           PN+ T + ++ G  + GN+ +  +L+   +   G       P+ F Y SLI G C+++ V
Sbjct: 192 PNIYTFNAMVNGYCKIGNV-VEAELYASKIVQAG-----LHPDTFTYTSLILGHCRNKGV 245

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           D   ++F+ M  KG   N +        LC+  ++ EA +L   M +    P + TYT L
Sbjct: 246 DNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVL 305

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           +      G+   A+ LF+ M  KG  P+V +Y+VLI+G CK   ++EA            
Sbjct: 306 IYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEA------------ 353

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           +K+ +EM    ++P   T N  IDG CK G + +  E+   +E ++C      +N LI G
Sbjct: 354 RKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICG 413

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            CK      A  L NK+  + L   ++ YN LIH   K   ++    LL  M ENG   D
Sbjct: 414 LCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPD 473

Query: 349 VDTFNTLM 356
             T++  +
Sbjct: 474 QWTYSVFI 481



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 156/329 (47%), Gaps = 26/329 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI G+C EG I DA +++  M +  C PN  T + LI GL +   ++  + L  +
Sbjct: 370 VTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNK 429

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+           P++  Y SLI G CK   ++    L   M + G+  +          
Sbjct: 430 MLERK------LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDT 483

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK+ ++ EA  L + +  +G+      YT L++GYC VGK++VA +L + M     +P+
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            ++Y+VLI G CK   ++EA ++  +M+  G K            P   T  I I  + K
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK------------PTVVTYTILIGEMLK 591

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G     +++F  +     +  V  + + +      G+ E   ++  K++ + ++ D+V 
Sbjct: 592 DGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVT 651

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGC 345
           Y +LI    + G   +    L  M + GC
Sbjct: 652 YTVLIDGYARLGLTHRAFDFLKCMVDTGC 680



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 139/285 (48%), Gaps = 22/285 (7%)

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           +N  G+F   +KP + CY +++  L K  L+D+ K +++E+ +  I+ N           
Sbjct: 147 MNADGEFK--FKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGY 204

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK   +VEA      ++Q GL+P  FTYT L+ G+C    V+ A  +F  M +KG   + 
Sbjct: 205 CKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNE 264

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY+ LI+G C+   + EA+            K+F +M   N  P   T  + I  L  +
Sbjct: 265 VSYTNLIHGLCEAGRINEAL------------KLFADMTEDNCCPTVRTYTVLIYALSGS 312

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G  +E + LF  ++   CE  V  +  LI G CK    + A ++ +++S K L+  VV Y
Sbjct: 313 GRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTY 372

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N LI    KEG I     +L  ME N C  +  T+N L+    +K
Sbjct: 373 NALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKK 417



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 147/358 (41%), Gaps = 50/358 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N LI+G C E  +++AS LV KM T G +P V T   LI  + + G  +  LK+ 
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVF 602

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             MV+ +G     Y+P+V  Y + +       ++++  D+  +M ++GI           
Sbjct: 603 NHMVS-LG-----YQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGIL---------- 646

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                            P + TYT L++GY  +G  + A      M   G  P ++  S+
Sbjct: 647 -----------------PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSI 689

Query: 203 LINGYCKN---------FNVEEAMNVSREMILNGFK--------KIFNEMKLCNVVPETF 245
           LI                 ++   NV+   I + +K        K+F +M       +  
Sbjct: 690 LIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVS 749

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
                I G C+   + E   L   ++        +I+NSL+  CCK G++  A  L + +
Sbjct: 750 IYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAM 809

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               L+  + +Y +L+  L  EG  +K   +   +   G   D   +  L+   L+++
Sbjct: 810 VENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRD 867


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 175/353 (49%), Gaps = 37/353 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI G C +G I  A  L  +M   G   N  T   LI GL + G      +++
Sbjct: 197 NVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMY 256

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M        G++ PN++ Y  +++ LCKD        +F EM+++G++ N +      
Sbjct: 257 EKMQED-----GVF-PNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLI 310

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ KL EAN++++ M   G+NP + TY  L++G+C VGK+  A++L   +  +G  
Sbjct: 311 GGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLS 370

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           P + +Y++L++G+C+  +   A  + +EM   G K                       ++
Sbjct: 371 PSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQL 430

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
              M+   +VP+  T ++ I G C  G + E   LF ++   NCE    I+N++I G CK
Sbjct: 431 RLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCK 490

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            G    A +L  ++  K L  +V +Y  +I  L KE + K+   L+  M ++G
Sbjct: 491 EGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSG 543



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 143/310 (46%), Gaps = 26/310 (8%)

Query: 58  NVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD 117
           +V +   LI G    G +  +  L  E+     +FG  + PNV  Y +LIDG CK   ++
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELT----EFG--FSPNVVIYTTLIDGCCKKGEIE 215

Query: 118 QTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           + KDLF EM   G+ AN          L K     +   + E M + G+ P ++TY  ++
Sbjct: 216 KAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVM 275

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           N  C  G+   A  +FD M  +G   ++ +Y+ LI G C            REM LN   
Sbjct: 276 NQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLC------------REMKLNEAN 323

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
           K+ ++MK   + P   T N  IDG C  G + + + L   L+       +  +N L+ G 
Sbjct: 324 KVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGF 383

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C+ G    A+++  ++  + +    V Y ILI    +   ++K   L LSMEE G   DV
Sbjct: 384 CRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDV 443

Query: 350 DTFNTLMISF 359
            T++ L+  F
Sbjct: 444 HTYSVLIHGF 453



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 14/217 (6%)

Query: 141 TKLVEANRLLELMMQRGLNPVIFT-YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           ++   ++ LL  + +   +   F  Y  ++N Y     +N++I+ F+ M   GF+P    
Sbjct: 72  SQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVP---- 127

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
                   C N+ +   +  S     N +   FNE K   VV + ++  I I G C+ G 
Sbjct: 128 -----GSNCFNYLLTFVVGSSS---FNQWWSFFNENK-SKVVLDVYSFGILIKGCCEAGE 178

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + +  +L   L        V I+ +LI GCCK G  E A +LF ++    LVA+   Y +
Sbjct: 179 IEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTV 238

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           LI+ L K G  K+   +   M+E+G   ++ T+N +M
Sbjct: 239 LINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVM 275



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 6/110 (5%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI GFC++G + +AS+L K M    C PN    +T+I G  + G+    LKL +EM
Sbjct: 445 TYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEM 504

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
                       PNV  Y  +I+ LCK+R   + + L  +M D GI+ +T
Sbjct: 505 EEKE------LAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPST 548


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 174/351 (49%), Gaps = 29/351 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V +N LI G C +G++   ++LV  M   GC PN  T +TLI GL   G ++  + L 
Sbjct: 256 SPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLL 315

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
           + MV+          PN   YG+LI+GL K R       L + M+++G   N        
Sbjct: 316 ERMVSSK------CIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLI 369

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           + L K+ K  EA  L + M ++G  P I  Y+ +++G C  GK N A  + + M   G +
Sbjct: 370 SGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCL 429

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V++YS L+ G+ K    EEA+ V REM   G  +  NE          F  ++ IDGL
Sbjct: 430 PNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSR--NE----------FCYSVLIDGL 477

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN---LV 311
           C  G V E M ++  +     +     ++S+I+G C  G  + A +L++++ C+      
Sbjct: 478 CGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQ 537

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            DVV YNIL+  L  +  + +   LL  M + GC  DV T NT + +  +K
Sbjct: 538 PDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEK 588



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 30/261 (11%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           S   R YR LN   ++ LI G   EG   +A  L KKMA  GCRPN+     +I GL R 
Sbjct: 352 SMEERGYR-LNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCRE 410

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
           G  N      +E++NGM   G +  PNV+ Y SL+ G  K  L ++   ++ EM + G +
Sbjct: 411 GKPNEA----KEILNGMISSGCL--PNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCS 464

Query: 133 ANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            N          LC   ++ EA  +   M+  G+ P    Y+ ++ G C +G ++ A+ L
Sbjct: 465 RNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKL 524

Query: 185 FDSM---ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           +  M         PDV +Y++L++G C   +V  A+++   M+  G          C+  
Sbjct: 525 YHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRG----------CD-- 572

Query: 242 PETFTCNIFIDGLCKNGHVLE 262
           P+  TCN F++ L +     E
Sbjct: 573 PDVITCNTFLNTLSEKSDSCE 593



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 13/210 (6%)

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           M   ++P   ++  ++   C +G V+ AI +F  M  K  +PD ++Y  L++G CK   +
Sbjct: 179 MNMNISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERI 238

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           +EA+ +  EM   G          C+  P  +  N+ IDGLCK G +  V +L   + + 
Sbjct: 239 DEAVLLLDEMQSEG----------CSPSPVIY--NVLIDGLCKKGDLSRVTKLVDNMFLK 286

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            C      +N+LI G C  G  + A  L  ++     + + V Y  LI+ L K+ +    
Sbjct: 287 GCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDG 346

Query: 334 NYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             LL+SMEE G  L+   ++ L IS L KE
Sbjct: 347 ARLLISMEERGYRLNQHIYSVL-ISGLFKE 375



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 32/189 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+  ++ LI G C  G +++A  +  KM T G +P+     ++I GL   G+M+  LKL+
Sbjct: 466 NEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLY 525

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC---- 138
            EM   +       +P+V  Y  L+DGLC  + V +  DL   M D+G + + + C    
Sbjct: 526 HEM---LCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFL 582

Query: 139 -------------------------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
                                    K+ ++  A +++E+M+ + L P   T+  ++   C
Sbjct: 583 NTLSEKSDSCEEGRSFLEELVARLLKRQRVSGACKIVEVMLGKYLAPKTSTWAMIVPEIC 642

Query: 174 LVGKVNVAI 182
              K+N AI
Sbjct: 643 KPKKINAAI 651



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 34/251 (13%)

Query: 112 KDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
           K  L ++  DLF  M D+        CK++ +   N +L +++  GL      Y   L  
Sbjct: 124 KAHLPEKAVDLFHRMVDE------FRCKRS-VKSFNSVLNVIINEGL------YHRGLEF 170

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           Y  V   N+ + +          P+  S++++I   CK   V+ A+ V R M        
Sbjct: 171 YDYVVNSNMNMNI---------SPNGLSFNLVIKALCKLGFVDRAIEVFRGM-------- 213

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
               K C  +P+ +T    +DGLCK   + E + L   ++   C     I+N LI G CK
Sbjct: 214 --PEKKC--LPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCK 269

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G     ++L + +  K    + V YN LIH L  +G++ K   LL  M  + C  +  T
Sbjct: 270 KGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVT 329

Query: 352 FNTLMISFLQK 362
           + TL+   +++
Sbjct: 330 YGTLINGLVKQ 340


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 188/390 (48%), Gaps = 41/390 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A  AF + +RR   P +  TFN +I G C  G +R A  + K +  +G  P+V T +T+I
Sbjct: 169 AERAFKAALRRRVSP-DLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTII 227

Query: 67  TGL---RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            G     R G M     L +EMV       GI  PN   +  L++G CKD        +F
Sbjct: 228 DGYCKRGRAGRMYHVDALLKEMVEA-----GI-SPNEVTFNVLVNGYCKDSNTAAAVRVF 281

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EMK +GI A+ +        LC + K+ E  +L++ M   GL P + T   +LNG+C  
Sbjct: 282 EEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKK 341

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------------ 223
           G +  A    DSM +K   P+V +Y++L++GY +   +++A+ V   M            
Sbjct: 342 GMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIY 401

Query: 224 --ILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
             ++ GF +         + +EM++  V  +  T N+ I  LC  G V + ++L   + +
Sbjct: 402 NCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLM 461

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              E     +N++I G C+ G  + A E+  ++      A+VV YN+ I  L + G++++
Sbjct: 462 VGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEE 521

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            N LL  M E G   +  T++T+    ++K
Sbjct: 522 TNELLNEMLEKGLVPNGVTYDTIKEGMMEK 551



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 115/249 (46%), Gaps = 26/249 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T NS++ GFC +G + DA   +  M     +PNV T   L+ G RR   M   L + 
Sbjct: 327 NLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAV- 385

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +E ++G G      +PN   Y  LI G  ++        L  EM+ KG+ A+ +      
Sbjct: 386 KEAMSGKG-----VRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLI 440

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC K ++ +A +LL+ M+  GL PV  TY  ++NGYC  G +  A  +   M +    
Sbjct: 441 GALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKR 500

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +V +Y+V I   C+   +EE              ++ NEM    +VP   T +   +G+
Sbjct: 501 ANVVTYNVFIKCLCRMGKMEET------------NELLNEMLEKGLVPNGVTYDTIKEGM 548

Query: 255 CKNGHVLEV 263
            + G+  +V
Sbjct: 549 MEKGYTPDV 557



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 21/210 (10%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P  F+   LL+      +V++A   F +  R+   PD+F+++++I+G CK   + +A +
Sbjct: 147 RPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGD 206

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG------HVLEVMELFPTLEI 272
           V++            +++   + P   T N  IDG CK G      HV  +++      I
Sbjct: 207 VAK------------DIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGI 254

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           S  E+    FN L+ G CK      A  +F ++  + + A VV Y+ L+  L  EG++++
Sbjct: 255 SPNEV---TFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEE 311

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              L+  M++ G   ++ T N+++  F +K
Sbjct: 312 GVKLVDEMKDLGLVPNLATLNSVLNGFCKK 341


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 168/328 (51%), Gaps = 26/328 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N ++KG C EG + +A   +K M   G  P+V T +TLI    +  N+     L  E
Sbjct: 387 VTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDE 446

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLC- 138
           MV       G+ K + F   +L+  LCK++  ++ ++L      +G     ++  T++  
Sbjct: 447 MVRS-----GL-KMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAA 500

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K+ K   A  L + M +R L P I+TY  L+ G C +GK+  AI   + + +KG +PD
Sbjct: 501 YFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPD 560

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+++I+ YCK  ++E+A     +M+ N FK            P+  TCN  ++GLC 
Sbjct: 561 DTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFK------------PDVVTCNTLMNGLCL 608

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G + + ++LF +      ++ V  +N+LI+  CK G  + A   F  +  + L  D   
Sbjct: 609 HGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFT 668

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
           YN+++ AL + G+ ++   +L  ++E+G
Sbjct: 669 YNVVLSALSEAGRSEEAQNMLHKLDESG 696



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 156/340 (45%), Gaps = 25/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            T+N+L+  +   G I+ A+ +V+ M  FG  P++ T + L  GL + G ++   KL  E
Sbjct: 281 ATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDE 340

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     +   I  P+V  Y +L+D   K +      +L  EM+DKG+ ++ +        
Sbjct: 341 M-----EHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKG 395

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC++ +L EA   L++M + GL P + TY  L++ YC    V  A  L D M R G   D
Sbjct: 396 LCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMD 455

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            F+ + L+   CK    EEA  + R     GF            VP+  +    +    K
Sbjct: 456 TFTLNTLLYNLCKEKRYEEAEELLRSPPQRGF------------VPDEVSYGTVMAAYFK 503

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
                  + L+  +        +  +N+LI+G C  G    A +  N+L  K LV D   
Sbjct: 504 ENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTT 563

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YNI+IHA  KEG ++K       M EN    DV T NTLM
Sbjct: 564 YNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLM 603



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 141/334 (42%), Gaps = 46/334 (13%)

Query: 43  ASQLVKKMATFG-CRPNVTTCDTLITGLRRTGNMN-----------LTLKLHQEMVNGMG 90
           A+QL+      G  RP++   + +++ L R+ + +           + L+LH        
Sbjct: 156 AAQLLHSFRRRGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLH-------- 207

Query: 91  DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---CKKTK 142
                  PN + +  L+   C    +         M+  G++      NTLL   C+K  
Sbjct: 208 -------PNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGM 260

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L EA  LL  M + G+ P   TY  L++ Y  +G +  A  + ++M   GF PD+++Y+V
Sbjct: 261 LGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNV 320

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           L  G C+   V+EA  +  EM             L  V P+  T N  +D   K     +
Sbjct: 321 LAAGLCQAGKVDEAFKLKDEM-----------EHLSIVSPDVVTYNTLVDACFKYQRSSD 369

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            + L   +     +  +   N +++G C+ G  E A      ++ + L  DV+ YN LI 
Sbjct: 370 ALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLID 429

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A  K   + K   L+  M  +G  +D  T NTL+
Sbjct: 430 AYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLL 463



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 143/366 (39%), Gaps = 63/366 (17%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
            +L  F S I     P N  TFN L+   C +G + DA   +  M  FG           
Sbjct: 193 ASLDVFRSLIALRLHP-NHYTFNLLVHTHCSKGTLADALSTLSTMQGFGL---------- 241

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
                                           P+V  Y +L+   C+  ++ + + L   
Sbjct: 242 -------------------------------SPDVVTYNTLLKAHCRKGMLGEARTLLAR 270

Query: 126 MKDKGINA-----NTLLCKKTKL---VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           MK +GI       NTL+    +L    +A  ++E M   G  P ++TY  L  G C  GK
Sbjct: 271 MKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGK 330

Query: 178 VNVAIALFDSMARKGFM-PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           V+ A  L D M     + PDV +Y+ L++   K     +A+N+  EM   G K       
Sbjct: 331 VDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSL---- 386

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
                    T NI + GLC+ G + E +     +        V  +N+LI   CK     
Sbjct: 387 --------VTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVA 438

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A  L +++    L  D    N L++ L KE + ++   LL S  + G   D  ++ T+M
Sbjct: 439 KAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVM 498

Query: 357 ISFLQK 362
            ++ ++
Sbjct: 499 AAYFKE 504



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 33/181 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +D T+N +I  +C EG++  A Q   KM     +P+V TC+TL+ GL   G +   +KL 
Sbjct: 560 DDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLF 619

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
           +             K +V  Y +LI  LCKD  VD     F +M+               
Sbjct: 620 ESWAEKGK------KVDVITYNTLIQALCKDGDVDTALHFFADME--------------- 658

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                        RGL P  FTY  +L+     G+   A  +   +   G + + FSY +
Sbjct: 659 ------------ARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPL 706

Query: 203 L 203
           +
Sbjct: 707 I 707



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/184 (18%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 179 NVAIALFDSMARKGFM-PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           ++A  L  S  R+G + P + + + +++   ++ +     ++           +F  +  
Sbjct: 154 HLAAQLLHSFRRRGHVRPSLQAANAVLSALARSPSTSPQASLD----------VFRSLIA 203

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             + P  +T N+ +   C  G + + +    T++       V  +N+L++  C+ G+   
Sbjct: 204 LRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGE 263

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A  L  ++  + +      YN L+ A  + G IK+   ++ +M   G   D+ T+N L  
Sbjct: 264 ARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAA 323

Query: 358 SFLQ 361
              Q
Sbjct: 324 GLCQ 327


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 166/352 (47%), Gaps = 30/352 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L++ T   +++ FC +G  RD S+L ++M   G  PNV      I GL +   +     +
Sbjct: 218 LDNATCTVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYV 277

Query: 82  HQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTL--- 136
            +EMV  G+       KPNV+ + SLI+GLCK    ++   LF+++ K      N     
Sbjct: 278 LEEMVAKGL-------KPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYT 330

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 CK+ KL  A  LL  M+++GL P   TYT L++G+C  G  N A  L + M R+
Sbjct: 331 VMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRRE 390

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           GF P++++Y+ LI+G CK   ++EA  V R     G +             +  T  + I
Sbjct: 391 GFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQL------------DKVTYTVMI 438

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
              CK GH+   ++LF  +  + C   +  + +LI   C+    E + +LF+K     LV
Sbjct: 439 TEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELV 498

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
                Y  +I    K G+      +   M +NGC  D  T+  L IS L KE
Sbjct: 499 PTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGAL-ISGLCKE 549



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 144/348 (41%), Gaps = 65/348 (18%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N  T+  +I G+C EG +  A  L+ +M   G  PN  T  TLI+G  + G+ N  
Sbjct: 322 YKP-NVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCA 380

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK------------------ 120
                E++N M   G  ++PN++ Y +LIDGLCK   + +                    
Sbjct: 381 F----ELMNKMRREG--FQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTY 434

Query: 121 -----------------DLFMEMKDKG----INANTLL----CKKTKLVEANRLLELMMQ 155
                            DLF  M + G    I+  T L    C++ ++ E+ +L +  + 
Sbjct: 435 TVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLA 494

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
             L P   TYT ++ GYC VGK   A+ +F+ M + G   D  +Y  LI+G CK   +EE
Sbjct: 495 IELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEE 554

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A  +   M       +   +  C V P T          C+    +  + +   L+    
Sbjct: 555 ARALYEGM-------LDKRLVPCEVTPVTLAFE-----YCRREKAVVAVSILDRLDKRRK 602

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
              V   N L+R     G  E AS    K    +L  D +AY   I++
Sbjct: 603 NHTV---NVLVRKLSAIGHVEDASLFLKKALDVDLAVDRLAYTSFINS 647



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 151/376 (40%), Gaps = 59/376 (15%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           + A  +F+ R   P+       ++  F   G + +A+ +V +M + G    V T + ++ 
Sbjct: 98  VTAATTFVDRGSLPMAHEAMRRMVAAFAEAGRLPEAADMVFEMRSHGLPFCVETANWVLR 157

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
               TG+     K+     +GM   GG+  P+   + +LI G C+D  +++   L   M+
Sbjct: 158 AGLDTGSFAYARKV----FDGMVTRGGLL-PDARSFRALIVGCCRDGRMEEVDALLTVMQ 212

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
            +G   +   C                           T ++  +C  G+      LF  
Sbjct: 213 GQGFCLDNATC---------------------------TVIVRVFCQKGRFRDVSELFRR 245

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-IFNEMKLCNVV----- 241
           M   G  P+V +Y+  I+G CK   V++A  V  EM+  G K  ++    L N +     
Sbjct: 246 MLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGW 305

Query: 242 ------------------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                             P   T  + I G CK G +     L   +           + 
Sbjct: 306 TERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYT 365

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LI G CK G F  A EL NK+  +    ++  YN LI  L K+G+I +E Y +L M  N
Sbjct: 366 TLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKI-QEAYKVLRMANN 424

Query: 344 -GCALDVDTFNTLMIS 358
            G  LD  T+ T+MI+
Sbjct: 425 QGLQLDKVTY-TVMIT 439


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 174/368 (47%), Gaps = 38/368 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN+LI  +   G +  +  + + M   G  P++ T  T+I+   R G ++  +    E  
Sbjct: 402 FNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAM----EKF 457

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---------L 137
           N M D G    P+   Y  LI G C  R + + K+L  +M  KGI    +         L
Sbjct: 458 NHMIDTG--VPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNL 515

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ ++ E   +++L++  G  P + T+  L++GYCLVG +  A+ L DSM   G  PD+
Sbjct: 516 CKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDI 575

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNE 234
           ++Y+ L++GYCK+  +++A+ + R+M              IL+G          K++F+E
Sbjct: 576 YTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHE 635

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    +     T    + GLC+N    E   L   L   N +  +  FN +IR   K G 
Sbjct: 636 MIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGR 695

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A ELF  +S   LV  ++ Y ++I  L KE   +  + L  SME++ C  D    N 
Sbjct: 696 RQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNE 755

Query: 355 LMISFLQK 362
           ++   L K
Sbjct: 756 IIRMLLNK 763



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 171/397 (43%), Gaps = 65/397 (16%)

Query: 8   LMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           L  FG  +R    P  DV ++N+LI GF  EG +  A  L  KM   G  PNV T  +LI
Sbjct: 209 LPVFGRLLRTGLGP--DVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLI 266

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL +T  M+   ++ ++MV      G   +PN   Y  LI G     +  ++  +F EM
Sbjct: 267 NGLCKTKEMDKAERVLRQMV------GAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEM 320

Query: 127 KDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY----CL 174
               +  +        T LCK  ++ EA  + + M+ +G  P + +Y  LL+GY    C+
Sbjct: 321 SSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCI 380

Query: 175 VGKVNV-------------------------------AIALFDSMARKGFMPDVFSYSVL 203
            G  N+                               ++ +F+ M ++G  PD+ ++S +
Sbjct: 381 AGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTV 440

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I+ +C+   +++AM            + FN M    V P+T   +  I G C    +++ 
Sbjct: 441 ISAFCRLGRLDDAM------------EKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKA 488

Query: 264 MELFPT-LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            EL    L        ++ F S+I   CK G      ++ + +       +++ +N L+ 
Sbjct: 489 KELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVD 548

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
                G +K+   LL SME  G   D+ T+NTL+  +
Sbjct: 549 GYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGY 585



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 155/356 (43%), Gaps = 42/356 (11%)

Query: 43  ASQLVKKMATFGC---RPNVTTCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKP 98
           A +L K+M    C    P + T + LI   RR    +L L +   ++  G+G       P
Sbjct: 170 AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLG-------P 222

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLL 150
           +VF Y +LIDG  K+  VD+  DLF +M+++GI  N +        LCK  ++ +A R+L
Sbjct: 223 DVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVL 282

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             M+  G+ P   TY  L++GY   G    ++ +F  M+    +PDV + +  +   CK+
Sbjct: 283 RQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKH 342

Query: 211 FNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTC 247
             ++EA ++   M+L G K                        +FN M    VVP+    
Sbjct: 343 GRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVF 402

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           N  I+   + G + + + +F  +        +  F+++I   C+ G  + A E FN +  
Sbjct: 403 NTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMID 462

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             +  D   Y+ LI        + K   L+  M   G       F T +I+ L KE
Sbjct: 463 TGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKE 518



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 137/319 (42%), Gaps = 26/319 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F S+I   C EG + +   +V  +   G RPN+ T ++L+ G    GNM   + L    +
Sbjct: 508 FTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGL----L 563

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
           + M   G   +P+++ Y +L+DG CK   +D    LF +M  K +   ++        L 
Sbjct: 564 DSMESVG--VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLF 621

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +  + + A  +   M++ G+   I TY  +L G C     + A  L + +       D+ 
Sbjct: 622 QARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDIL 681

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++++I    K    +EA            K++F  +    +VP   T  + I  L K  
Sbjct: 682 TFNIVIRAMFKVGRRQEA------------KELFAAISTYGLVPTILTYRVMITNLIKEE 729

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              +   LF ++E S+C     I N +IR     G    A    +K+  K ++ +    +
Sbjct: 730 SFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTS 789

Query: 319 ILIHALGKEGQIKKENYLL 337
           +LI+     G+ ++   LL
Sbjct: 790 LLIYLFSVNGKYREYIKLL 808



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 27/249 (10%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N +TFNSL+ G+C+ GN+++A  L+  M + G  P++ T +TL+ G  + G ++  L
Sbjct: 537 RP-NLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDAL 595

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            L ++M++       +       Y  ++ GL + R     K++F EM + G+  +     
Sbjct: 596 TLFRDMLHKRVTLTSV------SYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYA 649

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LC+     EAN LLE +    +   I T+  ++     VG+   A  LF +++  
Sbjct: 650 TVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTY 709

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G +P + +Y V+I    K  + E+A N            +F+ M+  +  P++   N  I
Sbjct: 710 GLVPTILTYRVMITNLIKEESFEDADN------------LFSSMEKSSCTPDSRILNEII 757

Query: 252 DGLCKNGHV 260
             L   G V
Sbjct: 758 RMLLNKGEV 766


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 179/372 (48%), Gaps = 38/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + F  LI  +   G + +A  ++ +M   G  P+V T  TLI+ L R G +   +   
Sbjct: 290 NCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKF 349

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M+      G   +PN   Y SLI G C    + + K+L  EM + GI    +      
Sbjct: 350 NQMI------GTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSI 403

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              +CK+ ++++A+ + +L+   G    I  +  L++GYCLVG++  A ++ D+M   G 
Sbjct: 404 VHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGI 463

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KK 230
            PD F+Y+ L+NGY K+  +++ +N+ REM              IL+G          +K
Sbjct: 464 GPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQK 523

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           + +EM  C       T NI + GLC+N    E + +F  L   N +  +   N++I    
Sbjct: 524 MLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMY 583

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
                E A +LF+ +S   LV +   Y I+I  L KEG +++ + +  SME++GCA    
Sbjct: 584 TVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSR 643

Query: 351 TFNTLMISFLQK 362
             N  + + L+K
Sbjct: 644 LLNDTIRTLLEK 655



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 153/348 (43%), Gaps = 29/348 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           ++  ++K  C +   + A  L++ MA     C P+V T +T+I G  + G +     L+ 
Sbjct: 81  SYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYH 140

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT-- 141
           EM+         + P+V  + S+I+ LCK R VD  + L  +M D G+  N +       
Sbjct: 141 EMMQQG------FVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIH 194

Query: 142 ------KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
                 +  EA ++   M  RGL P I ++   ++  C  G+   A  +F SMA KG  P
Sbjct: 195 GYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRP 254

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           ++ +Y +L++GY       + M+             FN MK   +V       I ID   
Sbjct: 255 NIVTYGILLHGYATEGCFADMMS------------FFNTMKGDGIVANCLVFTILIDAYA 302

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G + E M +   ++       V  +++LI   C+ G    A + FN++    +  + V
Sbjct: 303 KRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTV 362

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCAL-DVDTFNTLMISFLQK 362
            Y+ LI      G + K   L+  M  NG    ++  FN+++ S  ++
Sbjct: 363 VYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKE 410



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 124/269 (46%), Gaps = 22/269 (8%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLF-MEMKDKGI------NANTLLC---KKTKLVEAN 147
           P+ F Y  ++  LC D    Q  DL  M  K++G+        NT++    K+ K+ +A 
Sbjct: 77  PDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKAC 136

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            L   MMQ+G  P + T+  ++N  C    V+ A  L   M   G  P+  +Y+ +I+GY
Sbjct: 137 NLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGY 196

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
                 EEA  + REM   G            ++P+  + N F+D LCK+G   E  E+F
Sbjct: 197 STLGRWEEATKMFREMTGRG------------LIPDIVSWNSFMDSLCKHGRSKEAAEIF 244

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
            ++        +  +  L+ G    G F      FN +    +VA+ + + ILI A  K 
Sbjct: 245 YSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKR 304

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
           G + +   +L  M+  G + DV T++TL+
Sbjct: 305 GMMDEAMLILSEMQGQGLSPDVFTYSTLI 333



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 145/351 (41%), Gaps = 71/351 (20%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+++LI   C  G + DA     +M   G +PN     +LI G    G++    +L  EM
Sbjct: 328 TYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEM 387

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           +N      GI +PN+  + S++  +CK+  V     +F  +KD G     I  NTL+   
Sbjct: 388 MNN-----GIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGY 442

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   ++ +A  +L+ M+  G+ P  FTY  L+NGY   G+++  + LF  M+ K   P  
Sbjct: 443 CLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTT 502

Query: 198 FSYSVLINGY-----------------------------------CKNFNVEEA------ 216
            +Y+++++G                                    C+N   +EA      
Sbjct: 503 VTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQK 562

Query: 217 ---MNV-----SREMILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
              MNV     +   ++N           K +F+ +    +VP   T  I I  L K G 
Sbjct: 563 LCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGS 622

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           V E   +F ++E S C     + N  IR   + G    A    +K+  K++
Sbjct: 623 VEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKGEIVKAGNYMSKVDGKSI 673



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 107/261 (40%), Gaps = 61/261 (23%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF-------------------------- 193
           P IFTY  ++NG C   +  + +A F  + R G                           
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 194 ----------MPDVFSYSVLINGYCKNFNVEEAMNVSREM----------------ILNG 227
                     +PD FSY++++   C +   ++A+++ R M                +++G
Sbjct: 66  LLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHG 125

Query: 228 FKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           F K         +++EM     VP+  T N  I+ LCK   V     L   +  +     
Sbjct: 126 FFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPN 185

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
              + S+I G    G +E A+++F +++ + L+ D+V++N  + +L K G+ K+   +  
Sbjct: 186 KVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFY 245

Query: 339 SMEENGCALDVDTFNTLMISF 359
           SM   G   ++ T+  L+  +
Sbjct: 246 SMAAKGHRPNIVTYGILLHGY 266


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 171/351 (48%), Gaps = 29/351 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V +N LI G C +G++   ++LV  M   GC PN  T +TLI GL   G ++  + L 
Sbjct: 256 SPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLL 315

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
           + MV+          PN   YG+LI+GL K R       L   M+++G + N        
Sbjct: 316 ERMVSSKC------IPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLI 369

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           + L K+ K  EA  L   M ++G  P I  Y+ L++G C  GK N A  + + M   G +
Sbjct: 370 SGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCL 429

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+ ++YS L+ G+ K    EEA+ V +EM   G  +              F  ++ IDGL
Sbjct: 430 PNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSR------------NKFCYSVLIDGL 477

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK---NLV 311
           C  G V E M ++  +     +     ++S+I+G C  G  + A +L++++ C+      
Sbjct: 478 CGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQ 537

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            DVV YNIL+  L  +  I +   LL SM + GC  DV T NT + +  +K
Sbjct: 538 PDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEK 588



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 127/267 (47%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+ + Y +L+DGLCK+  +D+   L  EM+ +G + + +        LCKK  L    +L
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKL 279

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           ++ M  +G  P   TY  L++G CL GK++ A++L + M     +P+  +Y  LING  K
Sbjct: 280 VDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVK 339

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                +A+ +   M   G+    N+             ++ I GL K G   E M L+  
Sbjct: 340 QRRATDAVRLLSSMEERGYH--LNQ----------HIYSVLISGLFKEGKAEEAMSLWRK 387

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +    C+  + +++ L+ G C+ G    A E+ N++     + +   Y+ L+    K G 
Sbjct: 388 MAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGL 447

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
            ++   +   M++ GC+ +   ++ L+
Sbjct: 448 CEEAVQVWKEMDKTGCSRNKFCYSVLI 474



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 123/268 (45%), Gaps = 30/268 (11%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +   A+    S   R Y  LN   ++ LI G   EG   +A  L +KMA  GC+PN+   
Sbjct: 342 RATDAVRLLSSMEERGYH-LNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVY 400

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             L+ GL R G  N      +E++N M   G +  PN + Y SL+ G  K  L ++   +
Sbjct: 401 SVLVDGLCREGKPNEA----KEILNRMIASGCL--PNAYTYSSLMKGFFKTGLCEEAVQV 454

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           + EM   G + N          LC   ++ EA  +   M+  G+ P    Y+ ++ G C 
Sbjct: 455 WKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCG 514

Query: 175 VGKVNVAIALFDSM---ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           +G ++ A+ L+  M         PDV +Y++L++G C   ++  A+++   M+  G    
Sbjct: 515 IGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRG---- 570

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGH 259
                 C+  P+  TCN F++ L +  +
Sbjct: 571 ------CD--PDVITCNTFLNTLSEKSN 590



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 121/272 (44%), Gaps = 40/272 (14%)

Query: 112 KDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL------------- 158
           K  L D+  DLF  M D+        CK++ +   N +L +++  GL             
Sbjct: 124 KAHLPDKAVDLFHRMVDE------FRCKRS-VKSFNSVLNVIINEGLYHRGLEFYDYVVN 176

Query: 159 -------NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
                  +P   ++  ++   C +  V+ AI +F  M  +  +PD ++Y  L++G CK  
Sbjct: 177 SNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEE 236

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            ++EA+ +  EM   G          C+  P  +  N+ IDGLCK G +  V +L   + 
Sbjct: 237 RIDEAVLLLDEMQSEG----------CSPSPVIY--NVLIDGLCKKGDLTRVTKLVDNMF 284

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
           +  C      +N+LI G C  G  + A  L  ++     + + V Y  LI+ L K+ +  
Sbjct: 285 LKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAT 344

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               LL SMEE G  L+   ++ L IS L KE
Sbjct: 345 DAVRLLSSMEERGYHLNQHIYSVL-ISGLFKE 375



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 118/254 (46%), Gaps = 26/254 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V ++ L+ G C EG   +A +++ +M   GC PN  T  +L+ G  +TG     +++ 
Sbjct: 396 NIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVW 455

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM     D  G  + N FCY  LIDGLC    V +   ++ +M   GI  +T+      
Sbjct: 456 KEM-----DKTGCSR-NKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSII 509

Query: 137 --LCKKTKLVEANRLLELMM---QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
             LC    +  A +L   M+   +    P + TY  LL+G C+   ++ A+ L +SM  +
Sbjct: 510 KGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDR 569

Query: 192 GFMPDVFSYSVLINGYCKNFNV-EEAMNVSREMILNGFKK--------IFNEMKLCNVVP 242
           G  PDV + +  +N   +  N  ++  +   E+++   K+        I   M    + P
Sbjct: 570 GCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAP 629

Query: 243 ETFTCNIFIDGLCK 256
           +T T  + +  +CK
Sbjct: 630 KTSTWAMIVREICK 643



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 32/189 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   ++ LI G C  G +++A  +  KM T G +P+     ++I GL   G+M+  LKL+
Sbjct: 466 NKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLY 525

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC---- 138
            EM   +       +P+V  Y  L+DGLC  + + +  DL   M D+G + + + C    
Sbjct: 526 HEM---LCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFL 582

Query: 139 -------------------------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
                                    K+ ++  A  ++E+M+ + L P   T+  ++   C
Sbjct: 583 NTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREIC 642

Query: 174 LVGKVNVAI 182
              K+N AI
Sbjct: 643 KPKKINAAI 651


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 184/371 (49%), Gaps = 49/371 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK-L 81
           ++ TF +L++GF  EG+I  A +L  +M+  GC P   T + LI G  + G +   L  +
Sbjct: 230 DETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYI 289

Query: 82  HQEM--------------VNGMGDFGGIY--------------KPNVFCYGSLIDGLCKD 113
            QE+              VNG+   G +               +P+V+ Y ++I+ LC +
Sbjct: 290 QQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNN 349

Query: 114 RLVDQTKDLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             +++ K +  +M D G        NTL   LC + +L EA  L   +  +GL+P ++T+
Sbjct: 350 GELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTF 409

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L+N  C VG  ++A+ LF+ M   G  PD  +Y++LI+  C +  + +A+++ +EM +
Sbjct: 410 NILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEV 469

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
           +G  +             T T N  IDGLCK   + E  E+F  ++++        FN+L
Sbjct: 470 SGCPQ------------STVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTL 517

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G C     + A+EL +++  + L  + V YN ++    K+G I K   +L +M  NG 
Sbjct: 518 IDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGF 577

Query: 346 ALDVDTFNTLM 356
            +DV T+ TL+
Sbjct: 578 EVDVVTYATLI 588



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 143/333 (42%), Gaps = 47/333 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN++I   C     R A  ++++M++    P+ TT  TL+ G    G++   L+L   
Sbjct: 197 VTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKAR 256

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143
               M + G    P       LI+G CK  R+ D    +  E+ D               
Sbjct: 257 ----MSEMG--CSPTSVTVNVLINGYCKLGRVGDALGYIQQEIAD--------------- 295

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
                        G  P   T++  +NG C  G V+ A+ +   M ++G  PDV++YS +
Sbjct: 296 -------------GFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTV 342

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           IN  C N  +EEA            K I N+M     +P+T T N  I  LC    + E 
Sbjct: 343 INCLCNNGELEEA------------KGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEA 390

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           ++L   L +      V  FN LI   CK G   +A  LF ++       D V YNILI  
Sbjct: 391 LDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDN 450

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L   G++ K   LL  ME +GC     T+NT++
Sbjct: 451 LCSSGKLAKALDLLKEMEVSGCPQSTVTYNTII 483



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 123/267 (46%), Gaps = 37/267 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TFN LI   C  G+   A +L ++M + GC P+  T + LI  L  +G +   L L 
Sbjct: 405 NVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLL 464

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM     +  G  +  V  Y ++IDGLCK R +++ +++F +M   GI  N +      
Sbjct: 465 KEM-----EVSGCPQSTV-TYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLI 518

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC   ++ +A  L++ M+  GL P   TY  +L  YC  G ++ A  +  +M   GF 
Sbjct: 519 DGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFE 578

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
            DV +Y+ LING CK    + A+ + R M + G K                        +
Sbjct: 579 VDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSL 638

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNG 258
           F EM      P+ FT  I   GLC+ G
Sbjct: 639 FREMTEVGGPPDAFTYKIVFRGLCRGG 665



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 157/347 (45%), Gaps = 27/347 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  TFN+LI   C E  + +A  L +++   G  PNV T + LI  L + G+ +L ++L 
Sbjct: 370 DTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLF 429

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM +          P+   Y  LID LC    + +  DL  EM+  G   +T+      
Sbjct: 430 EEMKSSG------CTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTII 483

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+ ++ EA  + + M   G+     T+  L++G C   +++ A  L D M  +G  
Sbjct: 484 DGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQ 543

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+ ++  YCK  N+ +A ++ + M  NGF+         +VV    T    I+GL
Sbjct: 544 PNNVTYNSILTHYCKQGNISKAADILQTMTANGFE--------VDVV----TYATLINGL 591

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK       ++L   + +   +   + +N +I+   +      A  LF +++      D 
Sbjct: 592 CKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDA 651

Query: 315 VAYNILIHALGKEGQIKKENY-LLLSMEENGCALDVDTFNTLMISFL 360
             Y I+   L + G   KE +  L+ M +NG   +  +F  L    L
Sbjct: 652 FTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLL 698



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 129/298 (43%), Gaps = 37/298 (12%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+N++I G C    I +A ++  +M   G   N  T +TLI GL     ++   +
Sbjct: 473 PQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAE 532

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           L  +M++ G+       +PN   Y S++   CK   + +  D+   M   G   + +   
Sbjct: 533 LVDQMISEGL-------QPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYA 585

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +   A +LL  M  +G+ P    Y P++           A++LF  M   
Sbjct: 586 TLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEV 645

Query: 192 GFMPDVFSYSVLINGYCKNFN-VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           G  PD F+Y ++  G C+    ++EA +   EM  NGF            +PE  +  + 
Sbjct: 646 GGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGF------------IPEFSSFRML 693

Query: 251 IDGLCKNG---HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
            +GL   G   +++  +EL   +E +N   F E   S IRG  +   +  A   F +L
Sbjct: 694 AEGLLNLGMDDYLIRAIELI--VEKAN---FRESDISAIRGYLRIRKYYDAIATFGRL 746



 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 82/224 (36%), Gaps = 13/224 (5%)

Query: 135 TLLCKKTKLVEANRLLELMMQR--GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           T L ++     A R+L   + R  GL P    Y  ++      G  ++   L   M R+G
Sbjct: 61  TALREQADPEAALRMLNSALARDDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREG 120

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
               +      I  Y +            ++  + F  + N++ +  V   T   N  + 
Sbjct: 121 HEVGLGLVQSFIGSYAR-----------LQLFDDAFDLVSNQLDMFGVQANTEVYNHLLT 169

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            L +   +  +   +  +     E  V  FN++I   C+      A  +  ++S  ++  
Sbjct: 170 VLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAP 229

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D   +  L+    +EG I+    L   M E GC+    T N L+
Sbjct: 230 DETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLI 273



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 41/84 (48%)

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
            E++N L+    +    ++    + ++S + +  DVV +N +I AL +  Q +    +L 
Sbjct: 161 TEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLE 220

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            M     A D  TF TLM  F+++
Sbjct: 221 EMSSCDVAPDETTFTTLMEGFVEE 244


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 163/337 (48%), Gaps = 25/337 (7%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R   RP N +++ +L++  C +     A  L++ M   G RP+V T  TLI GL    ++
Sbjct: 87  RLASRP-NAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADV 145

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           +  ++L  EM        GI +PNV  Y  L+ G CK    +    +F EM  +GI  + 
Sbjct: 146 DTAVELLNEMCES-----GI-EPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDV 199

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +        LC+  K+ +A R++++M +RGL P + TY  L+N  C  G V  A+ L  +
Sbjct: 200 VMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKN 259

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M+ KG  PDV +Y+ LI G      ++EAM +  EM+    +          V P+  T 
Sbjct: 260 MSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETR----------VRPDLMTF 309

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           N  I GLCK G + + +++   +  + C   +  FN LI G  +    + A EL ++++ 
Sbjct: 310 NSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMAS 369

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             L  D   Y+ILI+   K  Q+++    L  M   G
Sbjct: 370 SGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQG 406



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 160/360 (44%), Gaps = 45/360 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A         R   P N VT+N LI   C EG++R+A  L K M+  G +P+V T 
Sbjct: 214 KVKKAARVMDMMTERGLEP-NVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTY 272

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLITGL     M+  + L +EM+ G        +P++  + S+I GLCK   + Q   +
Sbjct: 273 NTLITGLSSVLEMDEAMALLEEMMQGETRV----RPDLMTFNSVIHGLCKIGWMRQALQV 328

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
              M + G   N                           +  +  L+ G   V KV  A+
Sbjct: 329 RAMMAENGCRCN---------------------------LVAFNLLIGGLLRVHKVKKAM 361

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            L D MA  G  PD F+YS+LING+CK   VE A            +   +EM+   + P
Sbjct: 362 ELMDEMASSGLQPDSFTYSILINGFCKMRQVERA------------ESYLSEMRHQGMEP 409

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           E       +  +C  G + +  +LF  ++  NC+L    ++++I G  K G  +IA E  
Sbjct: 410 EPVHYIPLLKAMCDQGMMGQARDLFNEMD-RNCKLDAAAYSTMIHGAFKSGEKKIAEEFL 468

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             +  + L+ D V Y+I I+   K G +     +L  M  +G   DV  F++L+  +  K
Sbjct: 469 KDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAK 528



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 163/353 (46%), Gaps = 37/353 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMA---TFGCRPNVTTCDTLITGL---RRTGNMN 76
           + V++N+++   C +G +  A  L++ M+       RPN  +  TL+  L   RR     
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
             L+        M D G   +P+V  YG+LI GLC    VD   +L  EM + GI  N +
Sbjct: 115 GLLR-------SMQDCG--VRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVV 165

Query: 137 L--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
           +        CK  +     ++ E M  RG+ P +  YT L++  C  GKV  A  + D M
Sbjct: 166 VYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMM 225

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             +G  P+V +Y+VLIN  CK  +V EA+++ + M   G            V P+  T N
Sbjct: 226 TERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKG------------VQPDVVTYN 273

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLS 306
             I GL     + E M L   +      +  ++  FNS+I G CK G    A ++   ++
Sbjct: 274 TLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMA 333

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
                 ++VA+N+LI  L +  ++KK   L+  M  +G   D  T++ L+  F
Sbjct: 334 ENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGF 386



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 22/275 (8%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           +PN   Y +L+  LC DR   Q   L   M+D G+  + +        LC    +  A  
Sbjct: 91  RPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVE 150

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           LL  M + G+ P +  Y+ LL+GYC  G+      +F+ M+ +G  PDV  Y+ LI+  C
Sbjct: 151 LLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLC 210

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           ++  V++A  V   M   G +            P   T N+ I+ +CK G V E ++L  
Sbjct: 211 RHGKVKKAARVMDMMTERGLE------------PNVVTYNVLINSMCKEGSVREALDLRK 258

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL--SCKNLVADVVAYNILIHALGK 326
            +     +  V  +N+LI G       + A  L  ++      +  D++ +N +IH L K
Sbjct: 259 NMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCK 318

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            G +++   +   M ENGC  ++  FN L+   L+
Sbjct: 319 IGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLR 353



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 105/241 (43%), Gaps = 48/241 (19%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFNS+I G C  G +R A Q+   MA  GCR N+   + LI GL R   +   ++L  E
Sbjct: 307 MTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDE 366

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M +      G+ +P+ F Y  LI+G CK R V++ +    EM+ +G+    +        
Sbjct: 367 MASS-----GL-QPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKA 420

Query: 137 LCKKTKLVEANRL----------------------------------LELMMQRGLNPVI 162
           +C +  + +A  L                                  L+ M+  GL P  
Sbjct: 421 MCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDA 480

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            TY+  +N +   G +  A  +   M   GF+PDV  +  LI GY    + E+ + ++RE
Sbjct: 481 VTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTRE 540

Query: 223 M 223
           M
Sbjct: 541 M 541


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 182/391 (46%), Gaps = 63/391 (16%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
             + ++R Y P + +T  +LIKG C+ G ++ A +    +     + +  +  TLI GL 
Sbjct: 127 LATILKRGYHP-DVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLC 185

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G     ++L + +           KP+V  Y  +ID LCK++LV +  +L+ EM  K 
Sbjct: 186 KIGETKAAIQLMRNLEERS------IKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQ 239

Query: 131 INANTL-------------------------------------------LCKKTKLVEAN 147
           I  N +                                           L K+ K+  A 
Sbjct: 240 IYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAK 299

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L +MM+  + P + TY  L++GY LV +V  A  +F+SMA+ G  P V SY+++I+G 
Sbjct: 300 IVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGL 359

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK   V+EA++            +F EMK  NV+P T T N  IDGLCK+G +  V +L 
Sbjct: 360 CKTKMVDEAIS------------LFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLV 407

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +   +    V  ++SLI   CK    + A  LF K+  + +  D+  Y ILI  L K 
Sbjct: 408 DKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKG 467

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
           G++K    +   +   G  LD+ T+ T+MIS
Sbjct: 468 GRLKIAQEVFQHLLIKGYHLDIRTY-TVMIS 497



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 152/330 (46%), Gaps = 26/330 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI GFC+ G + +A  L+ +M      P+V T   LI  L + G M     + 
Sbjct: 243 NVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVL 302

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             M+          KP+V  Y SL+DG      V   K +F  M   G+           
Sbjct: 303 AVMMKAY------VKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMI 356

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK   + EA  L E M  + + P   T+  L++G C  G++     L D M  +  +
Sbjct: 357 DGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQL 416

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            DV +YS LI+  CKN ++++A+ + ++MI               + P+ +T  I IDGL
Sbjct: 417 ADVITYSSLIDALCKNCHLDQAIALFKKMITQ------------EIQPDMYTYTILIDGL 464

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G +    E+F  L I    L +  +  +I G CK G+F+ A  L +K+     + + 
Sbjct: 465 CKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNA 524

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENG 344
           + ++I+I AL ++ +  K   LL  M   G
Sbjct: 525 ITFDIIICALFEKDENDKAEKLLREMIARG 554



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 121/267 (45%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P  F + +++  L K +       L   +  KGI ++ +         C   ++  +  +
Sbjct: 67  PPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSV 126

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +++RG +P + T T L+ G CL G+V  A+   D +    F  D  SY  LING CK
Sbjct: 127 LATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCK 186

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
               + A+ + R +     K            P+    NI ID LCKN  V E   L+  
Sbjct: 187 IGETKAAIQLMRNLEERSIK------------PDVVMYNIIIDSLCKNKLVGEACNLYSE 234

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +        V  + +LI G C  G    A  L N++  KN+  DV  ++ILI ALGKEG+
Sbjct: 235 MNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGK 294

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           +K    +L  M +     DV T+N+L+
Sbjct: 295 MKAAKIVLAVMMKAYVKPDVVTYNSLV 321



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 12/215 (5%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +A  L   M+     P  F +  +L+    + +   AI+L   +  KG   D+ + ++LI
Sbjct: 52  DAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILI 111

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           N +C    +  + +V   ++  G+             P+  T    I GLC  G V + +
Sbjct: 112 NCFCHLGQITLSFSVLATILKRGYH------------PDVITLTTLIKGLCLRGEVKKAL 159

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           +    +     +L    + +LI G CK G  + A +L   L  +++  DVV YNI+I +L
Sbjct: 160 KFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSL 219

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            K   + +   L   M       +V T+ TL+  F
Sbjct: 220 CKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGF 254



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           N A+ALF+ M      P  F ++ +++   K      A+++S+ +   G           
Sbjct: 51  NDAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKG----------- 99

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            +  +  T NI I+  C  G +     +  T+        V    +LI+G C  G  + A
Sbjct: 100 -ITSDLVTLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKA 158

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            +  + +       D ++Y  LI+ L K G+ K    L+ ++EE     DV  +N ++ S
Sbjct: 159 LKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDS 218

Query: 359 F 359
            
Sbjct: 219 L 219


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 170/354 (48%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 115 KYFKLVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 175 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 219

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 220 ------------------SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK------------P 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           + FT    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 310 DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D+  Y ++I+   K+G + K + LL  M+ NG A  V T+N LM
Sbjct: 370 REMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 423



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 158/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +               TC  ++  L +     L    +++++
Sbjct: 69  FSGLITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEDIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 183 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 291 DLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D+ T+  ++  F +K
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKK 394



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD----LKQA 295

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++++ M   G   KP+ F Y +LIDG CK+  +D   +    M  + I  + +      
Sbjct: 296 HDLIDEMSMKG--LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALI 353

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+  GL P I TYT ++N +C  G V     L   M R G  
Sbjct: 354 SGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHA 413

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 414 PSVVTYNVLMNG 425


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 180/343 (52%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+++++I G+C+ G ++   +L+++M   G +PN+ T +++I  L ++G ++   ++ +E
Sbjct: 11  VSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLRE 70

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+N      GI  P+   Y +LIDG CK   +     LF EM+ + I  + +        
Sbjct: 71  MINQ-----GIV-PDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICG 124

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+  K++EA+++   M  RG+ P   TYT L++GYC  G++  A +L + M + G  P+
Sbjct: 125 LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPN 184

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ L +G CK   V+ A  +  EM   G      ++ +C       T N  ++GLCK
Sbjct: 185 VVTYTALADGLCKLGQVDTANELLHEMCGKGL-----QLNIC-------TYNSLVNGLCK 232

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G++ + ++L   +E++        F +L+   CK G    A EL  ++  + L   V+ 
Sbjct: 233 SGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVIT 292

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +N+L++     G ++    LL  M E G   +  T+N+LM  +
Sbjct: 293 FNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQY 335



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 152/314 (48%), Gaps = 26/314 (8%)

Query: 54  GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
           G  P+V +  T+I G    G +   LKL QEM        G+ KPN++ Y S+I  LCK 
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEM-----QMKGL-KPNLYTYNSIILLLCKS 58

Query: 114 RLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTY 165
             VD  + +  EM ++GI  +T++        CK   +  A +L + M ++ + P    Y
Sbjct: 59  GKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAY 118

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T ++ G C  GK+  A  +F+ M  +G  PD  +Y+ LI+GYCK+  +E+A ++  +M+ 
Sbjct: 119 TAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQ 178

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
           +G            + P   T     DGLCK G V    EL   +     +L +  +NSL
Sbjct: 179 SG------------LTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSL 226

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           + G CK G    A +L  ++    +  D + +  L+ A  K G++ K + LL  M + G 
Sbjct: 227 VNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGL 286

Query: 346 ALDVDTFNTLMISF 359
              V TFN LM  F
Sbjct: 287 QPTVITFNVLMNGF 300



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 156/337 (46%), Gaps = 27/337 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K++ A   F     R   P ++VT+ +LI G+C  G +  A  L  +M   G  PNV T 
Sbjct: 130 KMMEADKVFNKMFSRGVEP-DEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTY 188

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             L  GL + G ++   +L  EM       G   + N+  Y SL++GLCK   + Q   L
Sbjct: 189 TALADGLCKLGQVDTANELLHEMC------GKGLQLNICTYNSLVNGLCKSGNIRQAVKL 242

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM+  G+  +T+         CK  ++V+A+ LL  M+ RGL P + T+  L+NG+C+
Sbjct: 243 MEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCM 302

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G +     L   M  KG MP+  +Y+ L+  YC   N+     + + M   G       
Sbjct: 303 SGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARG------- 355

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                V+P++ T NI I G CK  ++ E   L   +      L    +NS+I+G  K   
Sbjct: 356 -----VMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKK 410

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
              A ELF ++  + + AD   YN+ +     EG ++
Sbjct: 411 ISEARELFEEMRREGMAADAEIYNLFVDISYGEGNME 447



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 157/342 (45%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+NS+I   C  G + DA +++++M   G  P+     TLI G  + GN+    KL 
Sbjct: 44  NLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLF 103

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM            P+   Y ++I GLC+   + +   +F +M  +G+  + +      
Sbjct: 104 DEMEKQR------IVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLI 157

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  ++ +A  L   M+Q GL P + TYT L +G C +G+V+ A  L   M  KG  
Sbjct: 158 DGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQ 217

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            ++ +Y+ L+NG CK+ N+ +A+            K+  EM++  + P+T T    +D  
Sbjct: 218 LNICTYNSLVNGLCKSGNIRQAV------------KLMEEMEVAGMYPDTITFTTLMDAY 265

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G +++  EL   +     +  V  FN L+ G C  G+ E    L   +  K ++ + 
Sbjct: 266 CKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNT 325

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             YN L+        ++    +   M   G   D +T+N L+
Sbjct: 326 TTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILI 367



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 153/337 (45%), Gaps = 26/337 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           + + ++I G C  G + +A ++  KM + G  P+  T  TLI G  ++G M     LH +
Sbjct: 116 IAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQ 175

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV       G+  PNV  Y +L DGLCK   VD   +L  EM  KG+  N          
Sbjct: 176 MVQS-----GL-TPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNG 229

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   + +A +L+E M   G+ P   T+T L++ YC  G++  A  L   M  +G  P 
Sbjct: 230 LCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPT 289

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +++VL+NG+C +  +E+   +   M+  G            ++P T T N  +   C 
Sbjct: 290 VITFNVLMNGFCMSGMLEDGERLLAWMLEKG------------IMPNTTTYNSLMKQYCI 337

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             ++    E++  +           +N LI+G CK    + A  L  +++ K       +
Sbjct: 338 RNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASS 397

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           YN +I    K+ +I +   L   M   G A D + +N
Sbjct: 398 YNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYN 434



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 136/284 (47%), Gaps = 38/284 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L  G C  G +  A++L+ +M   G + N+ T ++L+ GL ++GN+   +KL 
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLM 243

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM     +  G+Y P+   + +L+D  CK   + +  +L  EM D+G+    +      
Sbjct: 244 EEM-----EVAGMY-PDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLM 297

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C    L +  RLL  M+++G+ P   TY  L+  YC+   +     ++  M  +G M
Sbjct: 298 NGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVM 357

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
           PD  +Y++LI G+CK  N++EA  + +EM   GF                       +++
Sbjct: 358 PDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEAREL 417

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           F EM+   +  +    N+F+D     G++   +EL     I NC
Sbjct: 418 FEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDE-AIENC 460



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 111/224 (49%), Gaps = 23/224 (10%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           RG  P + +Y+ ++NGYCL G++   + L   M  KG  P++++Y+ +I   CK+  V++
Sbjct: 4   RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 216 AMNVSREMI--------------LNGF---------KKIFNEMKLCNVVPETFTCNIFID 252
           A  V REMI              ++GF          K+F+EM+   +VP+       I 
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLC+ G ++E  ++F  +     E     + +LI G CK G  E A  L N++    L  
Sbjct: 124 GLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTP 183

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +VV Y  L   L K GQ+   N LL  M   G  L++ T+N+L+
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLV 227


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 177/350 (50%), Gaps = 28/350 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFN LI      G++  A++LV  M   GC PN  T +TLI GL   G ++  L L 
Sbjct: 243 NPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLL 302

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MV+          PN   YG++I+GL K R  +    + M M+++G  AN        
Sbjct: 303 EKMVSSKC------VPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLI 356

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K+ K   A RL + M ++G  P +  Y   ++G C   K + A  +   M  KGF+
Sbjct: 357 SGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFL 416

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+ F+YS L+ G+ K  + ++A+ V +EM+    +         NVV     C++ ++GL
Sbjct: 417 PNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRH--------NVV----CCSVLLNGL 464

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA-- 312
           C++G + E + ++  +     +  V  ++S+I+G C  G  +   +LF ++ C+   +  
Sbjct: 465 CESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRP 524

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           DVV YNIL +AL ++  + +   LL SM + GC  D  T N  + +  ++
Sbjct: 525 DVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRER 574



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 33/250 (13%)

Query: 133 ANTLLCKKTKLVEANRLLELMMQ-------------------RGLNPVIFTYTPLLNGYC 173
           AN L CK+T +   N +L +++Q                   +G  P + TY  ++   C
Sbjct: 127 ANDLHCKQT-VKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALC 185

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
            +G+++ A+  F  M  K   PDVF+YS L+NG CK   V+EA+             + +
Sbjct: 186 KLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVF------------LLD 233

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM+    +P   T N+ ID L KNG +    +L   + +  C      +N+LI G C  G
Sbjct: 234 EMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKG 293

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A  L  K+     V + V Y  +I+ L K+ + +   ++L+SMEE G   +   ++
Sbjct: 294 KLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYS 353

Query: 354 TLMISFLQKE 363
           +L IS L KE
Sbjct: 354 SL-ISGLFKE 362



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 151/332 (45%), Gaps = 28/332 (8%)

Query: 42  DASQLVKKMAT-FGCRPNVTTCDTLITGLRRTGNMNLTLK--LHQEMVNGMGDFGGIYKP 98
           +A     +MA    C+  V + ++++  + + G+ +   K  LH    N  G     ++P
Sbjct: 118 EAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKG-----FQP 172

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLL 150
           N+  Y  +I  LCK   +D+  D F EM  K  N +          LCK+ ++ EA  LL
Sbjct: 173 NLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLL 232

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
           + M   G  P   T+  L++     G ++ A  L D+M  KG +P+  +Y+ LI+G C  
Sbjct: 233 DEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLK 292

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
             +++A+++  +M+ +              VP   T    I+GL K     + + +  ++
Sbjct: 293 GKLDKALSLLEKMVSS------------KCVPNQVTYGTIINGLVKQRRAEDGVHILMSM 340

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           E    +    I++SLI G  K G  E A  L+ +++ K    +VV Y   I  L ++ + 
Sbjct: 341 EERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKP 400

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +   +L  M   G   +  T+++LM  F +K
Sbjct: 401 DEAEDILQEMLSKGFLPNAFTYSSLMKGFFKK 432



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 106/253 (41%), Gaps = 42/253 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T++SL+KGF  +G+ + A  + K+M +   R NV  C  L+ GL  +G +   L + 
Sbjct: 418 NAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVW 477

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             M+      G   KP+V  Y S+I GLC    VD+   LF EM+          C++ K
Sbjct: 478 THML------GEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ----------CQEPK 521

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                            P + TY  L N  C    +  AI L +SM  +G  PD  + ++
Sbjct: 522 S---------------RPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNI 566

Query: 203 LINGYCKNFNVEEAMN----------VSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
            +    +  N  +             + RE  L+   +I  EM L  + PE  T +  I 
Sbjct: 567 FLETLRERINPPQDGRLFLDELVVRLLKRERKLSAL-RIVEEMLLRFLPPEPSTWSRVIQ 625

Query: 253 GLCKNGHVLEVME 265
             CK   + E ++
Sbjct: 626 RTCKPKRIRETID 638


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 179/368 (48%), Gaps = 39/368 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-LTLKLHQEM 85
           FN     +   G I  A  +  KM   G  PNV     LI  L + G ++   +K +Q +
Sbjct: 377 FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMI 436

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
             G+        PN+  + SL+ GLC     ++ ++L  EM D+GI  N +        L
Sbjct: 437 NEGV-------TPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNL 489

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +++E  RL++LM   G+ P  F+YTPL++GYCL G+ + A  +FD M   G  P  
Sbjct: 490 CNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTE 549

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF--KKIFNEMK--LCN 239
            +Y+ L++GYC    +++A  + REM              IL+G    K F+E K    N
Sbjct: 550 VTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLN 609

Query: 240 VVP-----ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           ++      + +T NI ++GLCK+  V E  ++F +L     +L +  F  +I    K G 
Sbjct: 610 MINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGR 669

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A +LF  +    LV +VV Y ++   L +EG +++ + L  +ME+NG A +    N 
Sbjct: 670 KEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNA 729

Query: 355 LMISFLQK 362
           L+   L +
Sbjct: 730 LVRRLLHR 737



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 159/345 (46%), Gaps = 29/345 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMAT---FGCRPNVTTCDTLITGLRRTGNMNLTL 79
           + V++  L+KG C E    +A +L+  MA      C PNV +   +I G    G ++   
Sbjct: 160 DTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPY 219

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TLL 137
            L  EM++      GI  P+V  Y ++IDGLCK +L D+ + +F +M D G   N  T  
Sbjct: 220 NLFLEMIDR-----GI-PPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYN 273

Query: 138 C------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           C         K  E  ++LE M  RGL P  +TY  LLN  C  G+   A   FDSM RK
Sbjct: 274 CLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRK 333

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P V +Y +LI+GY     + E  +    M+ NG              P+    NIF 
Sbjct: 334 GIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLS------------PDHHIFNIFF 381

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
               K G + + M++F  +        V  + +LI   CK G  + A   FN++  + + 
Sbjct: 382 SAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVT 441

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++V +N L++ L    + ++   L+  M + G   +   FNTL+
Sbjct: 442 PNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLI 486



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 157/356 (44%), Gaps = 25/356 (7%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITG 68
           AFG  ++  +R ++ +  N L+KG C    + +A   L+++M   GC P+  +   L+ G
Sbjct: 112 AFGLILKTGWR-MDHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKG 170

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +   D G    PNV  Y  +I+G   +  VD+  +LF+EM D
Sbjct: 171 LCNEKRAEEALELLHMMAD---DHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMID 227

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  + +        LCK      A  + + M+  G  P  +TY  L++GY  +GK   
Sbjct: 228 RGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKE 287

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
            + + + M+ +G  PD ++Y  L+N  CKN    EA      MI  G K           
Sbjct: 288 VVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIK----------- 336

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T  I I G    G + E+      +  +       IFN       K G+ + A +
Sbjct: 337 -PKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMD 395

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +FNK+    L  +VV Y  LI AL K G++         M   G   ++  FN+L+
Sbjct: 396 IFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLV 451



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 159/386 (41%), Gaps = 50/386 (12%)

Query: 2   SKVLG---ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCR-- 56
           S+ LG   AL  F   +    RP +   FN L+           AS+L         R  
Sbjct: 25  SRSLGLDDALKLFDELLHHA-RPASVRAFNHLLTAVS-RARCSSASELAVSHFNRMVREC 82

Query: 57  -----PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVFCYGSLI 107
                PN+ T   LI    R G++           +G   FG I    ++ +      L+
Sbjct: 83  SDKVAPNLCTYSILIGRFCRMGHLE----------HGFAAFGLILKTGWRMDHIAINQLL 132

Query: 108 DGLCKDRLVDQTKDLFME-MKDKGINANTL--------LCKKTKLVEANRLLELMMQ--- 155
            GLC  + V +  D+ ++ M + G   +T+        LC + +  EA  LL +M     
Sbjct: 133 KGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHG 192

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R   P + +Y+ ++NG+   G+V+    LF  M  +G  PDV +Y+ +I+G CK    + 
Sbjct: 193 RRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDR 252

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A  V ++MI NGFK            P  +T N  I G    G   EV+++   +     
Sbjct: 253 AEGVFQQMIDNGFK------------PNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGL 300

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           +     + SL+   CK G    A   F+ +  K +   V  Y ILIH    +G + + + 
Sbjct: 301 KPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHS 360

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQ 361
            L  M ENG + D   FN    ++ +
Sbjct: 361 FLDLMVENGLSPDHHIFNIFFSAYAK 386



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 133/307 (43%), Gaps = 26/307 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V FN+LI   C  G + +  +L+  M   G RP+  +   LI+G   TG  +      
Sbjct: 478 NAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEA---- 533

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
           +++ +GM   G    P    Y +L+ G C    +D    LF EM  KG+       NT+L
Sbjct: 534 EKVFDGMVSIG--LSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTIL 591

Query: 138 C---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               +  +  EA  L   M+  G    I+TY  +LNG C    V+ A  +F S+  KG  
Sbjct: 592 HGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQ 651

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            ++ +++++I    K    E+AM++   +  NG            +VP   T  +  + L
Sbjct: 652 LNIITFTIMIGALLKGGRKEDAMDLFAAIPANG------------LVPNVVTYRLVAENL 699

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            + G + E   LF  +E +      ++ N+L+R     G    A    +KL  +N   + 
Sbjct: 700 IEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEA 759

Query: 315 VAYNILI 321
              ++L+
Sbjct: 760 STTSLLM 766


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 170/362 (46%), Gaps = 37/362 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN +I   C EG ++ A   V  M T G +PN+ T +T++ G   +G +     +   M
Sbjct: 223 TFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM 282

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
                      +P+ F YGSLI G+CK   +++   +F EM  KG+       NTL+   
Sbjct: 283 KRQK------IEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGF 336

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C K  L  A+   + M+++G++P + TY  L++   +  + + A  +   +  KG  PD 
Sbjct: 337 CNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDA 396

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNE 234
            +Y++LINGYC+  N ++A  +  EM+ +G K                        +F +
Sbjct: 397 ITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKK 456

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           +    V+P+    N  IDG C N +V    EL   ++          FN++++G C+ G 
Sbjct: 457 ITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGK 516

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A ELF+++  + +  D +++N LI    + G IK    +   M + G    V T+N 
Sbjct: 517 VEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNA 576

Query: 355 LM 356
           L+
Sbjct: 577 LV 578



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 113/240 (47%), Gaps = 26/240 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NSLI    ME    +A  ++K++   G  P+  T + LI G  R  N      LH EM
Sbjct: 363 TYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEM 422

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
           +       GI KP    Y SL+  L K   + +  DLF ++  +G+  + ++        
Sbjct: 423 LAS-----GI-KPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGH 476

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C  + +  A  LL+ M +  + P   T+  ++ G+C  GKV  A  LFD M R+G  PD 
Sbjct: 477 CSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDH 536

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            S++ LI+GY +  ++++A  V  EM+  GF             P   T N  + GLCKN
Sbjct: 537 ISFNTLISGYSRRGDIKDAFRVRNEMLDTGFN------------PTVLTYNALVQGLCKN 584



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 67/114 (58%), Gaps = 6/114 (5%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P ++VTFN++++G C EG + +A +L  +M   G +P+  + +TLI+G  R G++    +
Sbjct: 498 PPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFR 557

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           +  EM+    D G  + P V  Y +L+ GLCK++  D  ++L  EM  KG+  +
Sbjct: 558 VRNEML----DTG--FNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPD 605



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +  EA      M ++G+ P I T   LL+ +  + +   A  L+  M R      V
Sbjct: 162 CDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSV 221

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           ++++++IN  CK   +++A            K     M+   V P   T N  + G C +
Sbjct: 222 YTFNIMINVLCKEGKLKKA------------KDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V     +  T++    E     + SLI G CK G  E AS++F ++  K L    V Y
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           N LI     +G +   +     M + G +  + T+N+L+ +   ++
Sbjct: 330 NTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQ 375



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 14/202 (6%)

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
           ++F Y  L+   C + + + A   F +M  KG +P + + + L++ + K  N  EA  V 
Sbjct: 152 IVFDY--LIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLK-LNRTEAAWV- 207

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                     ++ EM    +    +T NI I+ LCK G + +  +    +E S  +  + 
Sbjct: 208 ----------LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIV 257

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            +N+++ G C  G  E A  +   +  + +  D   Y  LI  + K+G++++ + +   M
Sbjct: 258 TYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEM 317

Query: 341 EENGCALDVDTFNTLMISFLQK 362
            + G       +NTL+  F  K
Sbjct: 318 VQKGLRPSAVIYNTLIDGFCNK 339


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 174/348 (50%), Gaps = 27/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++V +N+ + G+C  G++  A   +++M +FG RPN  T ++LI        M+      
Sbjct: 385 DEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKA---- 440

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +E V  M + G    P+V  Y +LIDG  K    D+   +  +M++ G+  N +      
Sbjct: 441 EEWVKKMAEKG--VTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLI 498

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  K++EA  +L  M+ RG+ P    Y  L++G C+VGKV  A+  FD M R    
Sbjct: 499 NCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEIS 558

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P + +Y+VLI+G CK   + EA +   ++  +G              P+  T N  I G 
Sbjct: 559 PTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHS------------PDVITYNSLISGY 606

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
              G+V + + L+ T++    +  V  ++ LI GC K GI E+  +L+N++   NL+ D 
Sbjct: 607 ANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGI-ELVEKLYNEMLQMNLLPDR 665

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V YN +IH   + G  +K   L   M + G   D  T+N+L++   ++
Sbjct: 666 VVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFRE 713



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 173/367 (47%), Gaps = 39/367 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI G+C  G +  A ++ ++M      PN+ T ++L++GL +   M     L +E
Sbjct: 247 VTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKE 306

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           M VNG       + P+ + Y  L DGL +    +   +L+ +  +KGI  N         
Sbjct: 307 MEVNG-------FMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLN 359

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LCK+ K+ +A  +L+   + GL      Y   +NGYC +G +N AI   + M   G  P
Sbjct: 360 GLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRP 419

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IF 232
           +  +++ LI+ +C    +++A    ++M              +++G+ K         I 
Sbjct: 420 NSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQIL 479

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            +M+   V P   +    I+ LCK+G +LE   +   +         +++N LI G C  
Sbjct: 480 EQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMV 539

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  + A   F+++    +   +V YN+LI  L K+G++ +    L  +  +G + DV T+
Sbjct: 540 GKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITY 599

Query: 353 NTLMISF 359
           N+L+  +
Sbjct: 600 NSLISGY 606



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 130/274 (47%), Gaps = 24/274 (8%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           ++ + F Y   I    K + +    +    M+ +G+  N          LC++ ++ +A 
Sbjct: 172 FRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAE 231

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           ++ + M    L   I TY  L++GYC VG+++ A  + + M  K   P++ +++ L++G 
Sbjct: 232 KMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGL 291

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL--CKNGHVLEVME 265
           CK   ++EA ++ +EM +NGF            +P+ +T +I  DGL  C +G+    ME
Sbjct: 292 CKMRKMKEARSLLKEMEVNGF------------MPDGYTYSILFDGLLRCDDGN--GAME 337

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L+         +     + L+ G CK G  E A E+  K +   LVAD V YN  ++   
Sbjct: 338 LYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYC 397

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + G + K    +  ME  G   +  TFN+L+  F
Sbjct: 398 RIGDMNKAILTIERMESFGLRPNSITFNSLIDKF 431



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 122/269 (45%), Gaps = 28/269 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  AL  F   +R    P   VT+N LI G C +G + +A   + ++ + G  P+V T 
Sbjct: 541 KVKDALRFFDEMMRSEISP-TLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITY 599

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           ++LI+G    GN++  L L++ M N      GI KP V  Y  LI G C    ++  + L
Sbjct: 600 NSLISGYANAGNVSKCLGLYETMKNL-----GI-KPTVRTYHPLISG-CSKEGIELVEKL 652

Query: 123 FMEM------KDKGINANTLLCKKT--KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           + EM       D+ +    + C        +A  L + M+ +G++P   TY  L+ G+  
Sbjct: 653 YNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFR 712

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            GK++    L ++M  K   P   +Y +L+ G+C   +   A    REM+ N F      
Sbjct: 713 EGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNF------ 766

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
                 +P    CN    GL + G + EV
Sbjct: 767 ------LPNASICNELTAGLEQEGRLQEV 789



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 16/229 (6%)

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           ++ CK   L EA  L E M + G  P + + + L +      +    + LF  +   GF 
Sbjct: 114 SVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFR 173

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D F Y+  I    K  N++  M            +  + M+   V P  F  N+ I GL
Sbjct: 174 TDTFMYAKAIQAAVKLQNLKMGM------------EFLDSMRKRGVRPNVFIYNVLIGGL 221

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           C+   + +  ++F   E+ N  L   I  +N+LI G CK G  + A ++  ++  K++  
Sbjct: 222 CREKRIRDAEKMFD--EMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAP 279

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +++ +N L+  L K  ++K+   LL  ME NG   D  T++ L    L+
Sbjct: 280 NIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLR 328


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 186/397 (46%), Gaps = 62/397 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V +N+LI  FC EG   DA +LV KM   G  P+V T ++ I+ L  +G +    ++ 
Sbjct: 216 NNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIF 275

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M   + +  G+  PNV  Y  ++ G CK+ ++++ K L   MK    NAN +      
Sbjct: 276 RDMQ--IDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKR---NANFINLESYN 330

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                L +  KL+EA  +L+ M+  G+ P I++Y  +++G C  G ++ A  L   M R 
Sbjct: 331 IWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRN 390

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------FKKIFNEMKLCNV 240
           G +PD  +YS L++GYC    V EA N+  EMI N               ++ E ++   
Sbjct: 391 GILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEA 450

Query: 241 VP------------ETFTCNIFIDGLCKNGHVLEVMELF--------------------- 267
                         +T TCNI I+ LC NG + + +E+                      
Sbjct: 451 ENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGL 510

Query: 268 --PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
              T+    C   +  ++++I G CK G  + A + F ++  K L  D   Y+  IH+  
Sbjct: 511 VDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFC 570

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +EG+I     +L  ME+ GC   + T+N+L++    K
Sbjct: 571 REGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSK 607



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 169/345 (48%), Gaps = 34/345 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI   C  G++ DA +L  KM   GC PN  T   L+ G  R G  +  L+L  +M
Sbjct: 149 TFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQM 208

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
              MG       PN   Y +LI   CK+      + L  +M++ G+  +        + L
Sbjct: 209 -RTMGIL-----PNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISAL 262

Query: 138 CKKTKLVEANRLLELMM---QRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           C   K++EA+R+   M    + GL +P + TY  +L G+C  G +  A  L D+M R   
Sbjct: 263 CGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNAN 322

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             ++ SY++ + G  +N  + EA  V +EM+  G            + P+ ++ NI +DG
Sbjct: 323 FINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIG------------IEPDIYSYNIVMDG 370

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKFG-IFEIASELFNKLSCKNLV 311
           LCKNG +L    +   L I N  L   + +++L+ G C  G +FE A+ L +++   N  
Sbjct: 371 LCKNG-MLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFE-ANNLLHEMISNNCS 428

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +    N+L+H+L KEG+I +   LL  M E G  +D  T N ++
Sbjct: 429 PNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIII 473



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 162/355 (45%), Gaps = 29/355 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+  ++ GFC EG + +A  LV  M       N+ + +  + GL R G +     + 
Sbjct: 290 NVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVL 349

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM+ G+G      +P+++ Y  ++DGLCK+ ++   + L   M   GI  +T+      
Sbjct: 350 KEML-GIG-----IEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLL 403

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C K K+ EAN LL  M+    +P  +T   LL+     G+++ A  L   M  KG+ 
Sbjct: 404 HGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYG 463

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN-------------EMKLCNVV 241
            D  + +++IN  C N  +++A+ +   M  +G   + N               K C   
Sbjct: 464 VDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKC--T 521

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+  T +  I GLCK G + +  + F  +     +    I+++ I   C+ G    A ++
Sbjct: 522 PDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQV 581

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +  +     +  YN LI  LG + QI +   L+  M E G + DV T+N ++
Sbjct: 582 LKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHML 636



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 176/417 (42%), Gaps = 109/417 (26%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A M  G  IR    P + VT+++L+ G+C +G + +A+ L+ +M +  C PN  TC+ L+
Sbjct: 380 ARMLMGLMIRNGILP-DTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLL 438

Query: 67  TGLRRTGNM----NLTLKLHQ---------------------------EMVNGM------ 89
             L + G +    NL  K+++                           E+VNGM      
Sbjct: 439 HSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSA 498

Query: 90  --GDFGGIY-------------KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
             G+ G  +              P++  Y ++I GLCK   +D  K  F+EM  KG+  +
Sbjct: 499 ALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPD 558

Query: 135 TLL--------CKKTKLVEA-----------------------------NRLLEL----- 152
           + +        C++ K+  A                             N++ EL     
Sbjct: 559 SAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLID 618

Query: 153 -MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            M ++G++P + TY  +LN  C  G++N A ++ D M +KG  P++ S+ +LI  +CK  
Sbjct: 619 EMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKAC 678

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
           + + +  V  E+ LN          +C      +T  +  + L   G V E  ELF T  
Sbjct: 679 DFKASHEVF-EIALN----------VCGHKEALYT--LMFNELLVGGKVAEAKELFETAL 725

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
             + ++   ++  LI   CK    E AS++ ++L  K    D  ++  +I   GK G
Sbjct: 726 DRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMG 782



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 120/272 (44%), Gaps = 24/272 (8%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANR 148
           +P+++ Y  L+    ++  V+    L+ +M    ++           LLC    L +A  
Sbjct: 109 QPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARE 168

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L + M  RG  P  FT+  L+ GYC  G  +  + L   M   G +P+   Y+ LI+ +C
Sbjct: 169 LFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFC 228

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K     +A            +K+ ++M+   +VP   T N  I  LC +G +LE   +F 
Sbjct: 229 KEGKTHDA------------EKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFR 276

Query: 269 TLEISN----CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            ++I          V  +  ++ G CK G+ E A  L + +       ++ +YNI +  L
Sbjct: 277 DMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGL 336

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            + G++ +   +L  M   G   D+ ++N +M
Sbjct: 337 IRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVM 368



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 16/182 (8%)

Query: 176 GKVNVAIALFDSMARKGF---MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           G  N AI+ F S+ R  F    P ++ Y+VL+    +   VE    + ++M+L       
Sbjct: 89  GFFNKAISHFKSL-RSNFPEKQPSIYLYNVLLKSCIRENRVELVSWLYKDMVL------- 140

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                  V PE +T N+ I  LC +GH+ +  ELF  +    CE     F  L+RG C+ 
Sbjct: 141 -----ARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRA 195

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G+     EL  ++    ++ + V YN LI +  KEG+      L+  M E+G    V+TF
Sbjct: 196 GLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETF 255

Query: 353 NT 354
           N+
Sbjct: 256 NS 257



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 98/244 (40%), Gaps = 48/244 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +   +++ I  FC EG I  A Q++K M   GC   + T ++LI GL   G+ N   +L+
Sbjct: 558 DSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGL---GSKNQIFELY 614

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
             +++ M + G    P+V  Y  +++ LC+   ++    +  EM  KGI+ N        
Sbjct: 615 G-LIDEMREKG--VSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILI 671

Query: 135 TLLCKK----------------------------------TKLVEANRLLELMMQRGLNP 160
              CK                                    K+ EA  L E  + R  + 
Sbjct: 672 KAFCKACDFKASHEVFEIALNVCGHKEALYTLMFNELLVGGKVAEAKELFETALDRSFDI 731

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
             F Y  L++  C   K+  A  +   +  KG+  D  S+  +I+G+ K  N   A  ++
Sbjct: 732 GNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKHVADELA 791

Query: 221 REMI 224
             M+
Sbjct: 792 ERMM 795


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 167/350 (47%), Gaps = 31/350 (8%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R  +RP +  TFNSLI G+C    +  A  L  KM   G   +  +   LI G   TG 
Sbjct: 156 VRSGWRP-DAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGR 214

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++  L+L +E+           +P+++ + +L+ GLC  R  ++   +  +MK+ G    
Sbjct: 215 VDEALELFREL----------EQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPA 264

Query: 135 T--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           T        L C++ K  EA ++L  M   GL P   T T ++N YC  G+++ A+ +F+
Sbjct: 265 TRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFE 324

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
           SM  KG  P+V++Y+ ++ G+C    V +AM             + ++M+ C V P+  T
Sbjct: 325 SMKLKGCEPNVWTYNAMVQGFCNVGKVYKAM------------ALLDQMRECGVEPDVVT 372

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N+ I G C +GH+     L   +E +        +N LI   CK G  + A  LF+ L 
Sbjct: 373 YNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLE 432

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            + +  + V +N +I+ L K G+       L  M   GCA D  T++  +
Sbjct: 433 YRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFI 482



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 153/336 (45%), Gaps = 22/336 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            T+N+LI+  C   ++R A + +  M   G RP+  T ++LI G  RT  +++     Q+
Sbjct: 130 ATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVA----QD 185

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----CKK 140
           + + M   G  +  +   Y +LI+G C+   VD+  +LF E++   +  +  L    C  
Sbjct: 186 LFDKMPLRG--FSQDAVSYAALIEGFCETGRVDEALELFRELEQPDMYTHAALVKGLCDA 243

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            +  E   +L+ M + G  P    Y  L++ +C   K   A  + + M   G +P   + 
Sbjct: 244 RRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTC 303

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + ++N YC            RE  ++G  ++F  MKL    P  +T N  + G C  G V
Sbjct: 304 TAVVNAYC------------REGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKV 351

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            + M L   +     E  V  +N LIRG C  G  E A  L   +    L AD   YN+L
Sbjct: 352 YKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVL 411

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           I AL K G++ +   L   +E  G   +  TFNT++
Sbjct: 412 IDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVI 447



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 134/317 (42%), Gaps = 63/317 (19%)

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---------LLCKKTKLVEANRLLELM 153
           + SL+    +  L      LF  M   G  A T          LC++  L  A R L LM
Sbjct: 96  FRSLLTHFSRYALTPLMLRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSLM 155

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           ++ G  P  FT+  L+ GYC   +++VA  LFD M  +GF  D  SY+ LI G+C+   V
Sbjct: 156 VRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRV 215

Query: 214 EEAMNVSREM--------------------------ILNGFKKI---------------- 231
           +EA+ + RE+                          +L   K++                
Sbjct: 216 DEALELFRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLW 275

Query: 232 ------------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                        NEM    +VP   TC   ++  C+ G +   + +F ++++  CE  V
Sbjct: 276 CREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNV 335

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             +N++++G C  G    A  L +++    +  DVV YN+LI     +G I+    LL  
Sbjct: 336 WTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRL 395

Query: 340 MEENGCALDVDTFNTLM 356
           ME NG A D  T+N L+
Sbjct: 396 MEGNGLAADQYTYNVLI 412



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 131/305 (42%), Gaps = 26/305 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT  +++  +C EG +  A ++ + M   GC PNV T + ++ G    G +   + L   
Sbjct: 301 VTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMAL--- 357

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            ++ M + G   +P+V  Y  LI G C D  ++    L   M+  G+ A+          
Sbjct: 358 -LDQMRECG--VEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDA 414

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+ EA  L + +  RG+ P   T+  ++NG C  GK +VA    + M   G  PD
Sbjct: 415 LCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPD 474

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            ++YS  I   CK     E ++   EM+              +V P T    I ID L K
Sbjct: 475 TYTYSPFIENLCKTKGSREGLSFIDEMLQK------------DVKPSTVNYTIVIDRLFK 522

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             +      ++  +    C   V  + + +R  C  G    A  +  ++    ++ D +A
Sbjct: 523 ERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMA 582

Query: 317 YNILI 321
           YN LI
Sbjct: 583 YNTLI 587



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 147/345 (42%), Gaps = 21/345 (6%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T KV  A   F     R  RP N VTFN++I G C  G    A   ++KM + GC P+  
Sbjct: 418 TGKVDEACSLFDGLEYRGIRP-NSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTY 476

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T    I  L +T      L    EM+          KP+   Y  +ID L K+R      
Sbjct: 477 TYSPFIENLCKTKGSREGLSFIDEMLQ------KDVKPSTVNYTIVIDRLFKERNYGLAT 530

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            ++ +M   G + + +         C + +L EA  ++  M + G+      Y  L++G+
Sbjct: 531 RIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGH 590

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE----AMNVSREMILNGF 228
             +GK + A+ +   M     MP+ F++ +L+    +    E+      +V + + L   
Sbjct: 591 TSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADV 650

Query: 229 KKIFNEMKLCNVVPETFTCNIFI-DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
            ++F  MK  N VP +    + I +G  +   + EV  L   ++  +  L  +I+ SL+ 
Sbjct: 651 FELFELMKK-NSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVN 709

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
             CK  ++  A  L   +     + ++++Y  L+     EGQ  +
Sbjct: 710 CFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADR 754



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 161/375 (42%), Gaps = 42/375 (11%)

Query: 9   MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           MA    +R C    + VT+N LI+G C++G+I  A +L++ M   G   +  T + LI  
Sbjct: 355 MALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDA 414

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L +TG ++    L     +G+ ++ GI +PN   + ++I+GLCK    D       +M  
Sbjct: 415 LCKTGKVDEACSL----FDGL-EYRGI-RPNSVTFNTVINGLCKGGKFDVACTFLEKMVS 468

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
            G   +T         LCK     E    ++ M+Q+ + P    YT +++         +
Sbjct: 469 AGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGL 528

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A  ++  M   G  PDV +Y+  +  YC    + EA NV  EM   G            +
Sbjct: 529 ATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGG------------I 576

Query: 241 VPETFTCNIFIDG---LCKNGHVLEVMELFPTLE--ISNCELFVEIF---------NSLI 286
           + +    N  IDG   + K  H + +++    +    ++   F+ +          +  +
Sbjct: 577 IVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPL 636

Query: 287 RGCCKFGIFEIAS--ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +    +   E+A   ELF  +   ++ +   AY  ++    +E ++ +   L+  M+E+ 
Sbjct: 637 KTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDD 696

Query: 345 CALDVDTFNTLMISF 359
             L+ D + +L+  F
Sbjct: 697 LPLNEDIYTSLVNCF 711



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 42/285 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ + ++ +C EG + +A  +V +M   G   +    +TLI G    G  +  + + + 
Sbjct: 546 VTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKH 605

Query: 85  MVNGMGDFGGIYKPNVFCY-----GSLIDGLCKDRLVDQTK-----------DLFMEMKD 128
           M       G    PN F +       L   L +D  +  T            +LF  MK 
Sbjct: 606 MT------GVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFELFELMKK 659

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
             + ++            ++ +L E   L+  M +  L      YT L+N +C +     
Sbjct: 660 NSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPD 719

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A AL  SM   GF+P++ SY  L++G+      + A            K+IF  ++    
Sbjct: 720 AWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRA------------KEIFRGLRWKEY 767

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
             +     I IDGL + GH     ++   LE   C+   E +  L
Sbjct: 768 NTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYAML 812


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 181/368 (49%), Gaps = 29/368 (7%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GAL      ++R   P N V +N+++ G C  G + +A  L+ +M      PNV T + L
Sbjct: 198 GALECLKKMVKRNLGP-NVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCL 256

Query: 66  ITGL-RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           I GL    G     + L  EMV   G       P+V  +  L+DG CK+ L+ + + +  
Sbjct: 257 IQGLCGEFGGWREGVGLFNEMVAEKG-----IVPDVQTFSILVDGFCKEGLLLRAESVVG 311

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLN--PVIFTYTPLLNGYCL 174
            M   G+  N +         C ++++ EA R+  LM++ G    P + T+  L++G+C 
Sbjct: 312 FMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCK 371

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           V +V+ A++L   M  KG  PDVF+++ LI G+C+   V++ +           +++F  
Sbjct: 372 VKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCE---VKKPLAA---------RELFFT 419

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           MK    VP   TC + +DGL K     E + LF  +  S  +L + I+N ++ G CK G 
Sbjct: 420 MKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGK 479

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A +L + +  K L  D   YNI+I  L +EG +     LL  M+ENGC  +  ++N 
Sbjct: 480 LNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNV 539

Query: 355 LMISFLQK 362
            +   L+K
Sbjct: 540 FVQGLLRK 547



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 109/225 (48%), Gaps = 14/225 (6%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   K      +L LM + GL P + T   ++NG C+ G VN A+ L + M   G+  +
Sbjct: 120 LCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCN 179

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y  L+NG CK  +   A+   ++M+              N+ P     N  +DGLCK
Sbjct: 180 ARTYGALVNGLCKIGDTSGALECLKKMVKR------------NLGPNVVVYNAILDGLCK 227

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC-KFGIFEIASELFNKLSC-KNLVADV 314
            G V E + L   + + N E  V  +N LI+G C +FG +     LFN++   K +V DV
Sbjct: 228 RGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDV 287

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             ++IL+    KEG + +   ++  M   G   +V T+N+L+  +
Sbjct: 288 QTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGY 332


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 170/362 (46%), Gaps = 37/362 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN +I   C EG ++ A   V  M T G +PN+ T +T++ G   +G +     +   M
Sbjct: 223 TFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM 282

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
                      +P+ F YGSLI G+CK   +++   +F EM  KG+       NTL+   
Sbjct: 283 KRQK------IEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGF 336

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C K  L  A+   + M+++G++P + TY  L++   +  + + A  +   +  KG  PD 
Sbjct: 337 CNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDA 396

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNE 234
            +Y++LINGYC+  N ++A  +  EM+ +G K                        +F +
Sbjct: 397 ITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKK 456

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           +    V+P+    N  IDG C N +V    EL   ++          FN++++G C+ G 
Sbjct: 457 ITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGK 516

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A ELF+++  + +  D +++N LI    + G IK    +   M + G    V T+N 
Sbjct: 517 VEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNA 576

Query: 355 LM 356
           L+
Sbjct: 577 LV 578



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 113/240 (47%), Gaps = 26/240 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NSLI    ME    +A  ++K++   G  P+  T + LI G  R  N      LH EM
Sbjct: 363 TYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEM 422

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
           +       GI KP    Y SL+  L K   + +  DLF ++  +G+  + ++        
Sbjct: 423 LAS-----GI-KPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGH 476

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C  + +  A  LL+ M +  + P   T+  ++ G+C  GKV  A  LFD M R+G  PD 
Sbjct: 477 CSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDH 536

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            S++ LI+GY +  ++++A  V  EM+  GF             P   T N  + GLCKN
Sbjct: 537 ISFNTLISGYSRRGDIKDAFRVRNEMLDTGFN------------PTVLTYNALVQGLCKN 584



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 6/118 (5%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R   P ++VTFN++++G C EG + +A +L  +M   G +P+  + +TLI+G  R G++ 
Sbjct: 494 RMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIK 553

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
              ++  EM+    D G  + P V  Y +L+ GLCK++  D  ++L  EM  KG+  +
Sbjct: 554 DAFRVRNEML----DTG--FNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPD 605



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +  EA      M ++G+ P I T   LL+ +  + +   A  L+  M R      V
Sbjct: 162 CDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSV 221

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           ++++++IN  CK   +++A            K     M+   V P   T N  + G C +
Sbjct: 222 YTFNIMINVLCKEGKLKKA------------KDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V     +  T++    E     + SLI G CK G  E AS++F ++  K L    V Y
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           N LI     +G +   +     M + G +  + T+N+L+ +   ++
Sbjct: 330 NTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQ 375



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 14/202 (6%)

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
           ++F Y  L+   C + + + A   F +M  KG +P + + + L++ + K  N  EA  V 
Sbjct: 152 IVFDY--LIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLK-LNRTEAAWV- 207

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                     ++ EM    +    +T NI I+ LCK G + +  +    +E S  +  + 
Sbjct: 208 ----------LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIV 257

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            +N+++ G C  G  E A  +   +  + +  D   Y  LI  + K+G++++ + +   M
Sbjct: 258 TYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEM 317

Query: 341 EENGCALDVDTFNTLMISFLQK 362
            + G       +NTL+  F  K
Sbjct: 318 VQKGLRPSAVIYNTLIDGFCNK 339


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 168/346 (48%), Gaps = 27/346 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F + ++R Y P + +T N+LIKG C  G I+ A     K+   G + +  +  TLI
Sbjct: 147 AFSVFANILKRGYHP-DAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLI 205

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G      +L +++       G   KP+V  Y ++I  LCK++ V    DL+ EM
Sbjct: 206 NGLCKAGETKAVARLLRKLE------GHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEM 259

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             KGI+ N           C    L EA  LL  M  + +NP ++T+  L++     GK+
Sbjct: 260 IVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKI 319

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + AI+LF+ M  K   P++ +Y+ LI+G CKN ++E A+ + ++M   G +         
Sbjct: 320 DEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQ--------- 370

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P+ ++  I +D LCK G +    + F  L +    L V  +N +I G CK G+F   
Sbjct: 371 ---PDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDV 427

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            +L +K+  K  + D + +  +I AL ++ +  K    L  M   G
Sbjct: 428 MDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIARG 473



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 152/334 (45%), Gaps = 45/334 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T N LI  FC   +I  A  +   +   G  P+  T +TLI GL   G +   L  H
Sbjct: 127 NLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFH 186

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            ++V   G     ++ +   YG+LI+GLCK                           +TK
Sbjct: 187 DKVV-AQG-----FQLDQVSYGTLINGLCK-------------------------AGETK 215

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
            V   RLL  +    + P +  YT +++  C   +V  A  L+  M  KG  P+VF+Y+ 
Sbjct: 216 AVA--RLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNT 273

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI G+C   N++EA +            + NEMKL N+ P+ +T NI ID L K G + E
Sbjct: 274 LIYGFCIMGNLKEAFS------------LLNEMKLKNINPDVYTFNILIDALGKEGKIDE 321

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            + LF  ++  N    +  + SLI G CK    E A  L  K+  + +  DV +Y IL+ 
Sbjct: 322 AISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLD 381

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           AL K G+++        +   G  L+V T+N ++
Sbjct: 382 ALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMI 415



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 14/217 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N+LI GFC+ GN+++A  L+ +M      P+V T + LI  L + G ++  + L 
Sbjct: 267 NVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLF 326

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM +          PN+  Y SLIDGLCK+  +++   L  +MK++GI  +        
Sbjct: 327 EEMKHKN------MFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILL 380

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  +L  A +  + ++ +G +  + TY  ++NG C  G     + L   M  KG M
Sbjct: 381 DALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCM 440

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           PD  ++  +I    +    ++A    REMI  G  ++
Sbjct: 441 PDAITFKTIICALFEKDENDKAEKFLREMIARGLLEV 477



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 12/200 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P  F +  +L+           I+LF      G  P++ + ++LIN +C   ++  A +V
Sbjct: 91  PPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSV 150

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
              ++  G+             P+  T N  I GLC  G +   +     +     +L  
Sbjct: 151 FANILKRGYH------------PDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQ 198

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + +LI G CK G  +  + L  KL   ++  DVV Y  +IH L K  ++     L   
Sbjct: 199 VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSE 258

Query: 340 MEENGCALDVDTFNTLMISF 359
           M   G + +V T+NTL+  F
Sbjct: 259 MIVKGISPNVFTYNTLIYGF 278



 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 51/125 (40%)

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           FN M L    P TF  +  +  L KN H L V+ LF   + +     +   N LI   C 
Sbjct: 81  FNRMLLMRPPPPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCH 140

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
                 A  +F  +  +    D +  N LI  L   G+IK+  Y    +   G  LD  +
Sbjct: 141 LAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVS 200

Query: 352 FNTLM 356
           + TL+
Sbjct: 201 YGTLI 205


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 174/368 (47%), Gaps = 38/368 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN+LI  +   G +  +  + + M   G  P++ T  T+I+   R G ++  +    E  
Sbjct: 331 FNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAM----EKF 386

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---------L 137
           N M D G    P+   Y  LI G C  R + + K+L  +M  KGI    +         L
Sbjct: 387 NHMIDTG--VPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNL 444

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ ++ E   +++L++  G  P + T+  L++GYCLVG +  A+ L DSM   G  PD+
Sbjct: 445 CKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDI 504

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNE 234
           ++Y+ L++GYCK+  +++A+ + R+M              IL+G          K++F+E
Sbjct: 505 YTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHE 564

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    +     T    + GLC+N    E   L   L   N +  +  FN +IR   K G 
Sbjct: 565 MIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGR 624

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A ELF  +S   LV  ++ Y ++I  L KE   +  + L  SME++ C  D    N 
Sbjct: 625 RQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNE 684

Query: 355 LMISFLQK 362
           ++   L K
Sbjct: 685 IIRMLLNK 692



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 171/398 (42%), Gaps = 65/398 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
            L  FG  +R    P  DV ++N+LI GF  EG +  A  L  KM   G  PNV T  +L
Sbjct: 137 GLPVFGRLLRTGLGP--DVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSL 194

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I GL +T  M+   ++ ++MV      G   +PN   Y  LI G     +  ++  +F E
Sbjct: 195 INGLCKTKEMDKAERVLRQMV------GAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKE 248

Query: 126 MKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY----C 173
           M    +  +        T LCK  ++ EA  + + M+ +G  P + +Y  LL+GY    C
Sbjct: 249 MSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGC 308

Query: 174 LVGKVNV-------------------------------AIALFDSMARKGFMPDVFSYSV 202
           + G  N+                               ++ +F+ M ++G  PD+ ++S 
Sbjct: 309 IAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFST 368

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           +I+ +C+   +++AM            + FN M    V P+T   +  I G C    +++
Sbjct: 369 VISAFCRLGRLDDAM------------EKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVK 416

Query: 263 VMELFPT-LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
             EL    L        ++ F S+I   CK G      ++ + +       +++ +N L+
Sbjct: 417 AKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLV 476

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
                 G +K+   LL SME  G   D+ T+NTL+  +
Sbjct: 477 DGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGY 514



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 155/356 (43%), Gaps = 42/356 (11%)

Query: 43  ASQLVKKMATFGC---RPNVTTCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKP 98
           A +L K+M    C    P + T + LI   RR    +L L +   ++  G+G       P
Sbjct: 99  AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLG-------P 151

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLL 150
           +VF Y +LIDG  K+  VD+  DLF +M+++GI  N +        LCK  ++ +A R+L
Sbjct: 152 DVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVL 211

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             M+  G+ P   TY  L++GY   G    ++ +F  M+    +PDV + +  +   CK+
Sbjct: 212 RQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKH 271

Query: 211 FNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTC 247
             ++EA ++   M+L G K                        +FN M    VVP+    
Sbjct: 272 GRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVF 331

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           N  I+   + G + + + +F  +        +  F+++I   C+ G  + A E FN +  
Sbjct: 332 NTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMID 391

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             +  D   Y+ LI        + K   L+  M   G       F T +I+ L KE
Sbjct: 392 TGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKE 447



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 137/319 (42%), Gaps = 26/319 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F S+I   C EG + +   +V  +   G RPN+ T ++L+ G    GNM   + L    +
Sbjct: 437 FTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGL----L 492

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
           + M   G   +P+++ Y +L+DG CK   +D    LF +M  K +   ++        L 
Sbjct: 493 DSMESVG--VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLF 550

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +  + + A  +   M++ G+   I TY  +L G C     + A  L + +       D+ 
Sbjct: 551 QARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDIL 610

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++++I    K    +EA            K++F  +    +VP   T  + I  L K  
Sbjct: 611 TFNIVIRAMFKVGRRQEA------------KELFAAISTYGLVPTILTYRVMITNLIKEE 658

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              +   LF ++E S+C     I N +IR     G    A    +K+  K ++ +    +
Sbjct: 659 SFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTS 718

Query: 319 ILIHALGKEGQIKKENYLL 337
           +LI+     G+ ++   LL
Sbjct: 719 LLIYLFSVNGKYREYIKLL 737



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 27/249 (10%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N +TFNSL+ G+C+ GN+++A  L+  M + G  P++ T +TL+ G  + G ++  L
Sbjct: 466 RP-NLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDAL 524

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            L ++M++       +       Y  ++ GL + R     K++F EM + G+  +     
Sbjct: 525 TLFRDMLHKRVTLTSV------SYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYA 578

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LC+     EAN LLE +    +   I T+  ++     VG+   A  LF +++  
Sbjct: 579 TVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTY 638

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G +P + +Y V+I    K  + E+A N            +F+ M+  +  P++   N  I
Sbjct: 639 GLVPTILTYRVMITNLIKEESFEDADN------------LFSSMEKSSCTPDSRILNEII 686

Query: 252 DGLCKNGHV 260
             L   G V
Sbjct: 687 RMLLNKGEV 695


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 177/350 (50%), Gaps = 28/350 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFN LI      G++  A++LV  M   GC PN  T +TLI GL   G ++  L L 
Sbjct: 267 NPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLL 326

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MV+          PN   YG++I+GL K R  +    + M M+++G  AN        
Sbjct: 327 EKMVSSKC------VPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLI 380

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K+ K   A RL + M ++G  P +  Y   ++G C   K + A  +   M  KGF+
Sbjct: 381 SGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFL 440

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+ F+YS L+ G+ K  + ++A+ V +EM+    +         NVV     C++ ++GL
Sbjct: 441 PNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRH--------NVV----CCSVLLNGL 488

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA-- 312
           C++G + E + ++  +     +  V  ++S+I+G C  G  +   +LF ++ C+   +  
Sbjct: 489 CESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRP 548

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           DVV YNIL +AL ++  + +   LL SM + GC  D  T N  + +  ++
Sbjct: 549 DVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRER 598



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 33/250 (13%)

Query: 133 ANTLLCKKTKLVEANRLLELMMQ-------------------RGLNPVIFTYTPLLNGYC 173
           AN L CK+T +   N +L +++Q                   +G  P + TY  ++   C
Sbjct: 151 ANDLHCKQT-VKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALC 209

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
            +G+++ A+  F  M  K   PDVF+YS L+NG CK   V+EA+             + +
Sbjct: 210 KLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVF------------LLD 257

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM+    +P   T N+ ID L KNG +    +L   + +  C      +N+LI G C  G
Sbjct: 258 EMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKG 317

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A  L  K+     V + V Y  +I+ L K+ + +   ++L+SMEE G   +   ++
Sbjct: 318 KLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYS 377

Query: 354 TLMISFLQKE 363
           +L IS L KE
Sbjct: 378 SL-ISGLFKE 386



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 151/332 (45%), Gaps = 28/332 (8%)

Query: 42  DASQLVKKMAT-FGCRPNVTTCDTLITGLRRTGNMNLTLK--LHQEMVNGMGDFGGIYKP 98
           +A     +MA    C+  V + ++++  + + G+ +   K  LH    N  G     ++P
Sbjct: 142 EAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKG-----FQP 196

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLL 150
           N+  Y  +I  LCK   +D+  D F EM  K  N +          LCK+ ++ EA  LL
Sbjct: 197 NLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLL 256

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
           + M   G  P   T+  L++     G ++ A  L D+M  KG +P+  +Y+ LI+G C  
Sbjct: 257 DEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLK 316

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
             +++A+++  +M+ +              VP   T    I+GL K     + + +  ++
Sbjct: 317 GKLDKALSLLEKMVSS------------KCVPNQVTYGTIINGLVKQRRAEDGVHILMSM 364

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           E    +    I++SLI G  K G  E A  L+ +++ K    +VV Y   I  L ++ + 
Sbjct: 365 EERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKP 424

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +   +L  M   G   +  T+++LM  F +K
Sbjct: 425 DEAEDILQEMLSKGFLPNAFTYSSLMKGFFKK 456



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 106/253 (41%), Gaps = 42/253 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T++SL+KGF  +G+ + A  + K+M +   R NV  C  L+ GL  +G +   L + 
Sbjct: 442 NAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVW 501

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             M+      G   KP+V  Y S+I GLC    VD+   LF EM+          C++ K
Sbjct: 502 THML------GEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ----------CQEPK 545

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                            P + TY  L N  C    +  AI L +SM  +G  PD  + ++
Sbjct: 546 S---------------RPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNI 590

Query: 203 LINGYCKNFNVEEAMN----------VSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
            +    +  N  +             + RE  L+   +I  EM L  + PE  T +  I 
Sbjct: 591 FLETLRERINPPQDGRLFLDELVVRLLKRERKLSAL-RIVEEMLLRFLPPEPSTWSRVIQ 649

Query: 253 GLCKNGHVLEVME 265
             CK   + E ++
Sbjct: 650 RTCKPKRIRETID 662


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 178/367 (48%), Gaps = 37/367 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN     +   G I  A  +  KM   G  PNV     LI  L + G ++       +M+
Sbjct: 312 FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMI 371

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
           N      G+  PN+  + SL+ GLC     ++ ++L  EM D+GI  N +        LC
Sbjct: 372 NE-----GV-TPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLC 425

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
              +++E  RL++LM   G+ P  F+YTPL++GYCL G+ + A  +FD M   G  P   
Sbjct: 426 NVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEV 485

Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF--KKIFNEMK--LCNV 240
           +Y+ L++GYC    +++A  + REM              IL+G    K F+E K    N+
Sbjct: 486 TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNM 545

Query: 241 VP-----ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           +      + +T NI ++GLCK+  V E  ++F +L     +L +  F  +I    K G  
Sbjct: 546 INSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRK 605

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           E A +LF  +    LV +VV Y ++   L +EG +++ + L  +ME+NG A +    N L
Sbjct: 606 EDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNAL 665

Query: 356 MISFLQK 362
           +   L +
Sbjct: 666 VRRLLHR 672



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 159/374 (42%), Gaps = 52/374 (13%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTL 65
           +   FG  ++  +R +ND+  N L+KG C    + +A   L+++M   GC P+  +   L
Sbjct: 117 SFATFGLILKTGWR-VNDIVINQLLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSIL 175

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           + G          L+L + M N   D G    PNV  Y ++IDGLCK +L D+ + +F +
Sbjct: 176 LKGFCNENRAEEALELLRMMAN---DHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQ 232

Query: 126 MKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           M D G+  N                             TY  L++GY  +GK    + + 
Sbjct: 233 MIDNGVKPNN---------------------------DTYNCLIHGYLSIGKWKEVVQML 265

Query: 186 DSMARKGFMPDVFSYSVLINGYCK--------NFNVEEAMNVSREM------------IL 225
           + M+ +G  PD ++Y  L+N  C         +  VE  ++    +            ++
Sbjct: 266 EKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMI 325

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
           +    IFN+M+   + P        ID LCK G V +    F  +        + +FNSL
Sbjct: 326 DKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSL 385

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           + G C    +E A EL  ++  + +  + V +N LI  L   G++ +   L+  ME  G 
Sbjct: 386 VYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGV 445

Query: 346 ALDVDTFNTLMISF 359
             D  ++  L+  +
Sbjct: 446 RPDAFSYTPLISGY 459



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 132/307 (42%), Gaps = 26/307 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V FN+LI   C  G + +  +L+  M   G RP+  +   LI+G    G  +      
Sbjct: 413 NAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEA---- 468

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
           +++ +GM   G    P    Y +L+ G C    +D    LF EM  KG+       NT+L
Sbjct: 469 EKVFDGMVSIG--LSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTIL 526

Query: 138 C---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               +  +  EA  L   M+  G    I+TY  +LNG C    V+ A  +F S+  KG  
Sbjct: 527 HGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQ 586

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            ++ +++++I    K    E+AM++   +  NG            +VP   T  +  + L
Sbjct: 587 LNIITFTIMIGALLKGGRKEDAMDLFAAIPANG------------LVPNVVTYRLVAENL 634

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            + G + E   LF  +E +      ++ N+L+R     G    A    +KL  +N   + 
Sbjct: 635 IEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEA 694

Query: 315 VAYNILI 321
              ++LI
Sbjct: 695 STTSLLI 701



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 14/200 (7%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P   TY+ L+   C +G++  + A F  + + G+  +    + L+ G C    V EAM+V
Sbjct: 96  PNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDV 155

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL---EISNCE 276
                      +   M      P+T + +I + G C      E +EL   +      +C 
Sbjct: 156 -----------LLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCP 204

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             V  + ++I G CK  +F+ A  +F ++    +  +   YN LIH     G+ K+   +
Sbjct: 205 PNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQM 264

Query: 337 LLSMEENGCALDVDTFNTLM 356
           L  M   G   D  T+ +L+
Sbjct: 265 LEKMSARGLKPDCYTYGSLL 284


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 183/391 (46%), Gaps = 50/391 (12%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
            A+    S + +  +P   VT+NS++KG C  G    A ++ K+M  FG  P+V +   L
Sbjct: 209 AAMALVDSMVSKGLKP-GIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTIL 267

Query: 66  ITGLRRTGNMNLTLKLHQEMVN--------------------GMGDFGGIYKPNVFCYGS 105
           I G  R G +   LK+++EM +                    G  D    Y   + C+G 
Sbjct: 268 IGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGL 327

Query: 106 LIDGL---------CKDRLVDQTKDLFMEMKDKG-----INANTL---LCKKTKLVEANR 148
           + DG+         C+  L+     +  EM   G     +  NTL   LCK+ +L++A  
Sbjct: 328 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEG 387

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           LL  M +RG+ P + T+T L++GYC+ GK++ A+ LFD+M  +   PD+ +Y+ LI+G C
Sbjct: 388 LLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMC 447

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           +  ++++A +            ++++M    + P   T +I ID  C+ G V +      
Sbjct: 448 RQGDLDKAND------------LWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLD 495

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +        +  +NS+I+G C+ G      +   K+    +  D++ YN LIH   KE 
Sbjct: 496 EMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKED 555

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ++     LL  ME+     DV T+N L+  F
Sbjct: 556 KMHDAFKLLNMMEKEKVQPDVVTYNMLINGF 586



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 178/391 (45%), Gaps = 62/391 (15%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           +RC  P + VT N ++      G+   A  LV  M + G +P + T ++++ GL R+G  
Sbjct: 184 KRCVFP-DVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMW 242

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN- 134
           +   ++ +EM     DFG    P+V  +  LI G C+   +++   ++ EM+ +GI  + 
Sbjct: 243 DKAWEVFKEM----DDFG--VAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDL 296

Query: 135 -------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                   L  ++ K+  A   L  M   GL P    YT ++ G+C  G ++ A+ + D 
Sbjct: 297 VSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDE 356

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M   G +PDV +Y+ L+NG CK   + +A            + + NEM+   V P+  T 
Sbjct: 357 MVGCGCLPDVVTYNTLLNGLCKERRLLDA------------EGLLNEMRERGVPPDLCTF 404

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              I G C  G + + ++LF T+        +  +N+LI G C+ G  + A++L++ +  
Sbjct: 405 TTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHS 464

Query: 308 KNLVADVVAYNILIHALGKEGQIK-----------------------------------K 332
           + +  + V Y+ILI +  ++GQ++                                   K
Sbjct: 465 REIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSK 524

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               L  M  N  + D+ T+NTL+  +++++
Sbjct: 525 GQKFLQKMMVNKVSPDLITYNTLIHGYIKED 555



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 164/349 (46%), Gaps = 26/349 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N  T N ++  +C          ++ +M      P+V T + ++    R G+    + L
Sbjct: 154 VNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMAL 213

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLL 137
              MV+      G+ KP +  Y S++ GLC+  + D+  ++F EM D G+  +    T+L
Sbjct: 214 VDSMVSK-----GL-KPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTIL 267

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+  ++ EA ++ + M  RG+ P + +++ L+  +   GK++ A+A    M   G 
Sbjct: 268 IGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGL 327

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PD   Y+++I G+C+   + +A+ V  EM+             C  +P+  T N  ++G
Sbjct: 328 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVG------------CGCLPDVVTYNTLLNG 375

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK   +L+   L   +        +  F +LI G C  G  + A +LF+ +  + L  D
Sbjct: 376 LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 435

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +V YN LI  + ++G + K N L   M       +  T++ L+ S  +K
Sbjct: 436 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 484



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 140/297 (47%), Gaps = 26/297 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+ G C E  + DA  L+ +M   G  P++ T  TLI G    G ++  L+L   
Sbjct: 367 VTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDT 426

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M+N         +P++  Y +LIDG+C+   +D+  DL+ +M  + I  N +        
Sbjct: 427 MLNQR------LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 480

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+K ++ +A   L+ M+ +G+ P I TY  ++ GYC  G V+        M      PD
Sbjct: 481 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 540

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI+GY K   + +A             K+ N M+   V P+  T N+ I+G   
Sbjct: 541 LITYNTLIHGYIKEDKMHDAF------------KLLNMMEKEKVQPDVVTYNMLINGFSV 588

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           +G+V E   +F  +     E     + S+I G    G  + A +L +++  +    D
Sbjct: 589 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 15/234 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  AL  F + + +  RP + VT+N+LI G C +G++  A+ L   M +    PN  T 
Sbjct: 416 KLDKALQLFDTMLNQRLRP-DIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTY 474

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI      G +        EM+N      GI  PN+  Y S+I G C+   V + +  
Sbjct: 475 SILIDSHCEKGQVEDAFGFLDEMINK-----GIL-PNIMTYNSIIKGYCRSGNVSKGQKF 528

Query: 123 FMEM-----KDKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             +M         I  NTL+    K+ K+ +A +LL +M +  + P + TY  L+NG+ +
Sbjct: 529 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 588

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
            G V  A  +F+ M  KG  PD ++Y  +ING+    N +EA  +  EM+  GF
Sbjct: 589 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGF 642



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 16/183 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT++ LI   C +G + DA   + +M   G  PN+ T +++I G  R+GN++   K  
Sbjct: 470 NHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFL 529

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKG----INANTL 136
           Q+M VN +        P++  Y +LI G  K D++ D  K L M  K+K     +  N L
Sbjct: 530 QKMMVNKVS-------PDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNML 582

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +        + EA  + E M  +G+ P  +TY  ++NG+   G    A  L D M ++GF
Sbjct: 583 INGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGF 642

Query: 194 MPD 196
            PD
Sbjct: 643 APD 645



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           VFS +  +N Y  N  V    N  + +  +    + +EM+   V P+  T N+ +D   +
Sbjct: 147 VFSSNSEVNTYTLNIMVH---NYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFR 203

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G     M L  ++     +  +  +NS+++G C+ G+++ A E+F ++    +  DV +
Sbjct: 204 AGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRS 263

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + ILI    + G+I++   +   M   G   D+ +F+ L+  F ++
Sbjct: 264 FTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARR 309


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 175/372 (47%), Gaps = 38/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   FN LI  +   G +  A  + + M   G  P+  T  T+I+ L R G ++  L   
Sbjct: 422 NKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKF 481

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             MV    D G    P+   YG LI G C    + + K+L  EM +K I    +      
Sbjct: 482 NHMV----DIG--VPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSI 535

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+ ++ E   ++++M+Q G  P + T+  L+ GYCLVG +  A AL D+MA  G 
Sbjct: 536 INNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGI 595

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KK 230
            P+ + Y  L++GYCKN  +++A+ V R+M              IL+G          KK
Sbjct: 596 EPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKK 655

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F+EM          T  + + GLC+N    E   L   L   N +  +  FN +I    
Sbjct: 656 MFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMF 715

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A ELF+ +S   LV ++  Y+++I  L KE   ++ + L +S+E++G A D  
Sbjct: 716 KVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSR 775

Query: 351 TFNTLMISFLQK 362
             N ++   L K
Sbjct: 776 LLNHIVRMLLNK 787



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 166/366 (45%), Gaps = 41/366 (11%)

Query: 29  SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
           SLI GF  +G +  A  L  +M   G  P +  C+++I  L +   M+    + Q+MV+ 
Sbjct: 215 SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVD- 273

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK--------K 140
                GI  P++F Y  +IDGLCK + +D+ + +  +M + G   N++            
Sbjct: 274 ----SGI-APDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSIS 328

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
               E+ R+ + M   G+ P +      ++     G+ N A  +FDSM  KG  PD+ SY
Sbjct: 329 GMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISY 388

Query: 201 SVLINGYCK--------------NFNVEEAMNVSRE---MILNGFKK---------IFNE 234
           S   +  C               N  + + +  ++    +++N + +         IF +
Sbjct: 389 STNASWVCYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFED 448

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+   ++P+T T    I  LC+ G + + +  F  +          ++  LI+GCC  G 
Sbjct: 449 MQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGE 508

Query: 295 FEIASELFNKLSCKNLVADVVAY-NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
              A EL +++  K++    V Y + +I+ L KEG++ +   ++  M + G   +V TFN
Sbjct: 509 LVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFN 568

Query: 354 TLMISF 359
           +LM  +
Sbjct: 569 SLMEGY 574



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 156/380 (41%), Gaps = 58/380 (15%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN--- 76
           RP N +T+NSLI G+ + G   ++ ++ K+M++ G  P V  C++ I  L + G  N   
Sbjct: 312 RP-NSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAK 370

Query: 77  -----LTLK--------------------------LHQEMVNGMGDFGGIYKPNVFCYGS 105
                + LK                          +   + N M   G    PN   +  
Sbjct: 371 CIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKG--IAPNKHVFNI 428

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRG 157
           LI+   +  ++D+   +F +M++KG+  +T+        LC+  +L +A      M+  G
Sbjct: 429 LINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIG 488

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY-SVLINGYCKNFNVEEA 216
           + P    Y  L+ G C  G++  A  L   M  K   P    Y S +IN  CK   V E 
Sbjct: 489 VPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEG 548

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
            ++   M+  G +            P   T N  ++G C  G++ E   L   +     E
Sbjct: 549 KDIMDMMVQTGQR------------PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIE 596

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
               I+ +L+ G CK G  + A  +F  +  K +    V Y+I++H L +  +      +
Sbjct: 597 PNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKM 656

Query: 337 LLSMEENGCALDVDTFNTLM 356
              M E+G  + + T+  ++
Sbjct: 657 FHEMIESGTTVSIHTYGVVL 676



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 154/348 (44%), Gaps = 34/348 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ +I G C    +  A +++++M   G RPN  T ++LI G   +G  N ++++ ++ 
Sbjct: 282 TYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQ- 340

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
              M   G I  P V    S I  L K    ++ K +F  M  KG   +        + +
Sbjct: 341 ---MSSCGVI--PTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWV 395

Query: 138 CK---KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           C        V  + +  LM+ +G+ P    +  L+N Y   G ++ A+ +F+ M  KG +
Sbjct: 396 CYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMI 455

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +++ +I+  C+   +++A++             FN M    V P        I G 
Sbjct: 456 PDTVTFATVISSLCRIGRLDDALHK------------FNHMVDIGVPPSEAVYGCLIQGC 503

Query: 255 CKNGHVLEVMELFPTLEISNCELF---VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           C +G +++  EL    E+ N ++    V+ F+S+I   CK G      ++ + +      
Sbjct: 504 CNHGELVKAKELIS--EMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQR 561

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +VV +N L+      G +++   LL +M   G   +   + TL+  +
Sbjct: 562 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGY 609


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 177/351 (50%), Gaps = 30/351 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+  LI GF   G I +A +L ++M   G   +V    ++I+   R+GN+   L L 
Sbjct: 294 NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLF 353

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EM     D G I  P+   YG+LI G+CK   ++  + L  EM+ KGI+ N ++     
Sbjct: 354 DEMT----DKGLI--PSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLI 407

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+   + EA RL  +M ++GL   +F Y  + +G C + + + A  L  SM  +G  
Sbjct: 408 DGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVS 467

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  S++ LI+ YCK  N  EA            K++F EM+    VP   T N+ IDG 
Sbjct: 468 PNTMSFTTLIDIYCKEGNFVEA------------KRVFREMEEKGNVPNIITYNVLIDGY 515

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFN--SLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            K G++ E  +L   LE  N  L  +++   SLI G C  G  ++A +LF+++  + LV 
Sbjct: 516 SKRGNMKEAHKLKDELE--NRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVP 573

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +VV Y  +I  L K+G+ ++   L   M+E G   D   +++L+ S    E
Sbjct: 574 NVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSAE 624



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 152/323 (47%), Gaps = 26/323 (8%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
           +A +  + M   G   +  +C   +  LRR G ++  L+  + MVN   +        V+
Sbjct: 173 EALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEV------TVY 226

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--------KKTKLVEANRLLELM 153
               ++DGLCK   V+  + L  E+  KG+ AN +          K+  L     +L LM
Sbjct: 227 SLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLM 286

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
            + G+   + TYT L++G+  +GK+  A  LF+ M  KG   DV+ Y+ +I+  C++ NV
Sbjct: 287 EKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNV 346

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           + A+             +F+EM    ++P   T    I G+CK G +     L   ++  
Sbjct: 347 KRAL------------VLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGK 394

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             +L   IFN+LI G C+ G+ + A  L   +  K L +DV AYN +   L K  +  + 
Sbjct: 395 GIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEA 454

Query: 334 NYLLLSMEENGCALDVDTFNTLM 356
             LL SM E G + +  +F TL+
Sbjct: 455 KGLLFSMVERGVSPNTMSFTTLI 477



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 149/333 (44%), Gaps = 26/333 (7%)

Query: 38  GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97
           G +    +  ++M        V +   ++ GL + G++ +  KL  E+        G+ K
Sbjct: 204 GQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAK-----GV-K 257

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLLCKK----TKLVEANRL 149
            NV  Y + I+G  K   +    ++   M+ +G+  N    TLL        K+ EA RL
Sbjct: 258 ANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRL 317

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            E M ++G+   ++ YT +++  C  G V  A+ LFD M  KG +P   +Y  LI+G CK
Sbjct: 318 FEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCK 377

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              +E A  +  EM   G           ++ P  F  N  IDG C++G V E + L   
Sbjct: 378 AGQMEAAQMLVNEMQGKGI----------DLNPVIF--NTLIDGYCESGMVDEALRLQVV 425

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +E    E  V  +NS+  G CK    + A  L   +  + +  + +++  LI    KEG 
Sbjct: 426 MEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGN 485

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             +   +   MEE G   ++ T+N L+  + ++
Sbjct: 486 FVEAKRVFREMEEKGNVPNIITYNVLIDGYSKR 518



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 26/230 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V FN+LI G+C  G + +A +L   M   G   +V   +++ +GL +    +    L
Sbjct: 398 LNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGL 457

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
              MV       G+  PN   + +LID  CK+    + K +F EM++KG     I  N L
Sbjct: 458 LFSMVER-----GV-SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVL 511

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +    K+  + EA++L + +  RGL P ++T T L++G C+ GKV++A+ LFD M ++G 
Sbjct: 512 IDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGL 571

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           +P+V +Y+ +I+G  K+   EEA             K+++EMK   + P+
Sbjct: 572 VPNVVTYTAMISGLSKDGRSEEAF------------KLYDEMKETGLTPD 609



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 122/323 (37%), Gaps = 50/323 (15%)

Query: 43  ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDF-----GGIYK 97
           A ++ K + + G + ++ T  +L++ L  +  ++L L  H        DF        YK
Sbjct: 27  AGKISKTLVSSGAK-SLQTTPSLLSSLN-SQTVHLILSNHILTAESCLDFFHFIRKNYYK 84

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLE-LMMQR 156
           P++  Y +LI  L + R  D+                  L K  K  E   L     +  
Sbjct: 85  PDLRAYITLIFKLYRSRKSDK------------------LHKSQKFAEIRHLFNCAAVDD 126

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           GL   +     L++  C   K N          R  F    F   +L   Y  N    EA
Sbjct: 127 GLRVPVTVIASLVDDACNESKCN----------RAKFKEKFFD--LLFRVYADNKMFGEA 174

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           +     M   GF              +  +C +++  L + G V   +  F  +   + E
Sbjct: 175 LEAFEHMEKKGFH------------IDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVE 222

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
           + V     ++ G CK G  E+  +L ++++ K + A+VV YN  I    K   +     +
Sbjct: 223 VTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEI 282

Query: 337 LLSMEENGCALDVDTFNTLMISF 359
           L  ME+ G A +V T+  L+  F
Sbjct: 283 LTLMEKEGVACNVVTYTLLIHGF 305


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 175/368 (47%), Gaps = 38/368 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN +I  +   G + +   +  +M   G  P+  T   +I    R G +   +    +M+
Sbjct: 405 FNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMI 464

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---------L 137
             MG      KP    Y SLI G C    + + K+L  EM  +GI    +         L
Sbjct: 465 -AMG-----LKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSL 518

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ ++VEA+ + + ++  G  P + T+  L++GY LVGK+  A  + D+M   G  PDV
Sbjct: 519 CKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDV 578

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------IFNE------MKLCNV 240
            SY+ LI+GYC+N  +++ + +  EM+  G K            +FN+       K+C+ 
Sbjct: 579 VSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHE 638

Query: 241 VPET------FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           + E+       TC I + GLC+N    E + +F  L   N +  + I N++I    K   
Sbjct: 639 MIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRK 698

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A ELF+ +S   LV +   Y ++I  L KEG +++ + +   ME++GCA      N 
Sbjct: 699 REEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNY 758

Query: 355 LMISFLQK 362
           ++   L+K
Sbjct: 759 IIRVLLEK 766



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 175/371 (47%), Gaps = 40/371 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMA--TFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           + +++N+++K  C +   + A  L+  M   + GC PNV T +T+I GL R G ++    
Sbjct: 189 DTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACN 248

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK- 139
           L  EM+       G+  P+V  Y S+ID LCK R +D+ + +  +M   G   N +    
Sbjct: 249 LFHEMMQ-----QGVV-PDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNC 302

Query: 140 -------KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                    +  E   +   M  +GL P I T    ++  C  GK   A   FDSMA KG
Sbjct: 303 MIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKG 362

Query: 193 FMPDVFSYSVLINGYCKN---------FNVEEAMNVSRE-----MILNGFKK-------- 230
             P++ +YSVL++GY            FN  E   +  +     ++++ + K        
Sbjct: 363 HKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETM 422

Query: 231 -IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            IF +M+   V+P+  T  I I    + G + + M+ F  +     +    +++SLI+G 
Sbjct: 423 LIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGF 482

Query: 290 CKFGIFEIASELFNKLSCKNLV-ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
           C  G    A EL +++  + +   ++V +N +I++L KEG++ + + +   +   G   D
Sbjct: 483 CMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPD 542

Query: 349 VDTFNTLMISF 359
           V TFN+L+  +
Sbjct: 543 VITFNSLIDGY 553



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 128/271 (47%), Gaps = 33/271 (12%)

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQR--GLNPVIFTYTPLLNG 171
           L   M + G+  +T+        LC+ ++   A  LL  M+++  G +P + TY  +++G
Sbjct: 177 LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHG 236

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK- 230
               G+V+ A  LF  M ++G +PDV +Y+ +I+  CK   +++A  V R+MI NGF+  
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPN 296

Query: 231 ----------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
                                 +F EM    ++P   TCN ++  LCK+G   E  E F 
Sbjct: 297 KVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFD 356

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
           ++     +  +  ++ L+ G    G F     LFN +    +VAD   +NI+I A GK G
Sbjct: 357 SMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRG 416

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + +   +   M+E G   D  T+  ++ +F
Sbjct: 417 MMDETMLIFTQMQEQGVIPDACTYGIVIAAF 447



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 156/358 (43%), Gaps = 26/358 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A +     I   ++P N VT+N +I G+ + G  ++ + + ++M + G  PN+ TC++ +
Sbjct: 281 AELVLRQMISNGFQP-NKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYM 339

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           + L + G      K   E  + M   G  +KPN+  Y  L+ G   +       +LF  M
Sbjct: 340 SSLCKHGKS----KEAAEFFDSMAAKG--HKPNLVTYSVLLHGYATEGCFVDMLNLFNSM 393

Query: 127 KDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           +  GI A+  +         K+  + E   +   M ++G+ P   TY  ++  +  +G++
Sbjct: 394 EGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRL 453

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A+  F+ M   G  P+   Y  LI G+C + N+ +A  +  EM+  G  +        
Sbjct: 454 ADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPR-------- 505

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P     N  I+ LCK G V+E  ++F  +        V  FNSLI G    G  E A
Sbjct: 506 ---PNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKA 562

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             + + +    +  DVV+YN LI    + G+I     L   M   G      T+  ++
Sbjct: 563 FGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIIL 620



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 149/345 (43%), Gaps = 29/345 (8%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R   RP N V FNS+I   C EG + +A  +   +   G RP+V T ++LI G    G +
Sbjct: 501 RGIPRP-NIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKI 559

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
                +   M++      GI +P+V  Y +LIDG C++  +D    LF EM  KG+   T
Sbjct: 560 EKAFGVLDAMISA-----GI-EPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTT 613

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +        L    + V A ++   M++ G    I T   +L G C     + AIA+F  
Sbjct: 614 ITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKK 673

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           +       ++   + +I+   K    EEA            K++F+ +    +VP   T 
Sbjct: 674 LGAMNVKFNIAIINTMIDAMYKVRKREEA------------KELFDSISATGLVPNASTY 721

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
            + I  L K G V E   +F  +E S C     + N +IR   + G    A     K+  
Sbjct: 722 GVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRVLLEKGEIVKAGNYMFKVDG 781

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE--NGCALDVD 350
           K +  +    ++L+    +EG+  ++  LL +  +   G  LDV+
Sbjct: 782 KRISLEASTVSLLMALFSREGKYWEDVKLLPAKYQFFGGDTLDVN 826



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 13/202 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + TY  L++  C   +  V  ALF    + G   DV   S+L+         ++ +N+
Sbjct: 117 PTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNL 176

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL--EISNCEL 277
                      + + M    V P+T + N  +  LC++      ++L  T+  +   C  
Sbjct: 177 -----------LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSP 225

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  +N++I G  + G    A  LF+++  + +V DVV Y  +I AL K   + K   +L
Sbjct: 226 NVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVL 285

Query: 338 LSMEENGCALDVDTFNTLMISF 359
             M  NG   +  T+N ++  +
Sbjct: 286 RQMISNGFQPNKVTYNCMIHGY 307


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 175/372 (47%), Gaps = 38/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   FN LI  +   G +  A  + + M   G  P+  T  T+I+ L R G ++  L   
Sbjct: 421 NKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKF 480

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             MV    D G    P+   YG LI G C    + + K+L  EM +K I    +      
Sbjct: 481 NHMV----DIG--VPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSI 534

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+ ++ E   ++++M+Q G  P + T+  L+ GYCLVG +  A AL D+MA  G 
Sbjct: 535 INNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGI 594

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KK 230
            P+ + Y  L++GYCKN  +++A+ V R+M              IL+G          KK
Sbjct: 595 EPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKK 654

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F+EM          T  + + GLC+N    E   L   L   N +  +  FN +I    
Sbjct: 655 MFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMF 714

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A ELF+ +S   LV ++  Y+++I  L KE   ++ + L +S+E++G A D  
Sbjct: 715 KVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSR 774

Query: 351 TFNTLMISFLQK 362
             N ++   L K
Sbjct: 775 LLNHIVRMLLNK 786



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 165/365 (45%), Gaps = 40/365 (10%)

Query: 29  SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
           SLI GF  +G +  A  L  +M   G  P +  C+++I  L +   M+    + Q+MV+ 
Sbjct: 215 SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVD- 273

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK--------K 140
                GI  P++F Y  +IDGLCK + +D+ + +  +M + G   N++            
Sbjct: 274 ----SGI-APDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSIS 328

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
               E+ R+ + M   G+ P +      ++     G+ N A  +FDSM  KG  PD+ SY
Sbjct: 329 GMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISY 388

Query: 201 SVLINGYCKNFN--VEEAMNVSREMILNGFKK-----------------------IFNEM 235
           S +++GY    +  + +  N+   M+  G                          IF +M
Sbjct: 389 STMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDM 448

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           +   ++P+T T    I  LC+ G + + +  F  +          ++  LI+GCC  G  
Sbjct: 449 QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGEL 508

Query: 296 EIASELFNKLSCKNLVADVVAY-NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
             A EL +++  K++    V Y + +I+ L KEG++ +   ++  M + G   +V TFN+
Sbjct: 509 VKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNS 568

Query: 355 LMISF 359
           LM  +
Sbjct: 569 LMEGY 573



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 157/371 (42%), Gaps = 41/371 (11%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N +T+NSLI G+ + G   ++ ++ K+M++ G  P V  C++ I  L + G  N   
Sbjct: 312 RP-NSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAK 370

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL--CKDRLVDQTKDLFMEMKDKGINANTLL 137
            +   MV       G  KP++  Y +++ G     D  +    ++F  M  KGI  N  +
Sbjct: 371 CIFDSMV-----LKGP-KPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHV 424

Query: 138 --------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                    +   + +A  + E M  +G+ P   T+  +++  C +G+++ A+  F+ M 
Sbjct: 425 FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMV 484

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---------------ILNGF------ 228
             G  P    Y  LI G C +  + +A  +  EM               I+N        
Sbjct: 485 DIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRV 544

Query: 229 ---KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
              K I + M      P   T N  ++G C  G++ E   L   +     E    I+ +L
Sbjct: 545 AEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTL 604

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           + G CK G  + A  +F  +  K +    V Y+I++H L +  +      +   M E+G 
Sbjct: 605 VDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGT 664

Query: 346 ALDVDTFNTLM 356
            + + T+  ++
Sbjct: 665 TVSIHTYGVVL 675



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 158/347 (45%), Gaps = 33/347 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ +I G C    +  A +++++M   G RPN  T ++LI G   +G  N ++++ ++ 
Sbjct: 282 TYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQ- 340

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
              M   G I  P V    S I  L K    ++ K +F  M  KG     I+ +T+L   
Sbjct: 341 ---MSSCGVI--PTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 395

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
                + L + + +  LM+ +G+ P    +  L+N Y   G ++ A+ +F+ M  KG +P
Sbjct: 396 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 455

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D  +++ +I+  C+   +++A++             FN M    V P        I G C
Sbjct: 456 DTVTFATVISSLCRIGRLDDALHK------------FNHMVDIGVPPSEAVYGCLIQGCC 503

Query: 256 KNGHVLEVMELFPTLEISNCELF---VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            +G +++  EL    E+ N ++    V+ F+S+I   CK G      ++ + +       
Sbjct: 504 NHGELVKAKELIS--EMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRP 561

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +VV +N L+      G +++   LL +M   G   +   + TL+  +
Sbjct: 562 NVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGY 608


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 176/357 (49%), Gaps = 39/357 (10%)

Query: 9   MAFGSF--IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           +A+G +  I R    +N  T N ++   C +G +      + ++   G  P++ T +TLI
Sbjct: 218 LAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLI 277

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +     G M        E++N M   G  + P V+ Y ++I+GLCK    ++ K++F EM
Sbjct: 278 SAYSSKGLMEEAF----ELMNAMPGKG--FSPGVYTYNTVINGLCKHGKYERAKEVFAEM 331

Query: 127 KDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G++ ++          CKK  +VE  ++   M  R + P +  ++ +++ +   G +
Sbjct: 332 LRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNL 391

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
           + A+  F+S+   G +PD   Y++LI GYC+   +  AMN+  EM              I
Sbjct: 392 DKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTI 451

Query: 225 LNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           L+G           K+FNEM    + P+++T  I IDG CK G++   MELF  ++    
Sbjct: 452 LHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRI 511

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
            L V  +N+L+ G  K G  + A E++  +  K ++   ++Y+IL++AL  +G + +
Sbjct: 512 RLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAE 568



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 176/362 (48%), Gaps = 29/362 (8%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   +R    P +  T+ SL+   C +G++ +  ++   M +    P++    ++++   
Sbjct: 328 FAEMLRSGLSP-DSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFT 386

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R+GN++  L       N + + G I  P+   Y  LI G C+  ++    +L  EM  +G
Sbjct: 387 RSGNLDKALMY----FNSVKEAGLI--PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG 440

Query: 131 -----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                +  NT+L   CK+  L EA++L   M +R L P  +T T L++G+C +G +  A+
Sbjct: 441 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAM 500

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            LF  M  K    DV +Y+ L++G+ K  +++ A            K+I+ +M    ++P
Sbjct: 501 ELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA------------KEIWADMVSKEILP 548

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              + +I ++ LC  GH+ E   ++  +   N +  V I NS+I+G C+ G         
Sbjct: 549 TPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFL 608

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN--GCALDVDTFNTLMISFL 360
            K+  +  V D ++YN LI+   +E  + K   L+  MEE   G   DV T+N+++  F 
Sbjct: 609 EKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFC 668

Query: 361 QK 362
           ++
Sbjct: 669 RQ 670



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 169/369 (45%), Gaps = 39/369 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ND  F+ LI+ +     +R+A +    + + G   ++  C+ LI  L R G + L   ++
Sbjct: 164 NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL 136
           QE+  +G+G        NV+    +++ LCKD  +++      ++++KG+       NTL
Sbjct: 224 QEISRSGVG-------INVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTL 276

Query: 137 LC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +     K  + EA  L+  M  +G +P ++TY  ++NG C  GK   A  +F  M R G 
Sbjct: 277 ISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGL 336

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNV-----SREMI------------------LNGFKK 230
            PD  +Y  L+   CK  +V E   V     SR+++                  L+    
Sbjct: 337 SPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALM 396

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
            FN +K   ++P+     I I G C+ G +   M L   +    C + V  +N+++ G C
Sbjct: 397 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLC 456

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K  +   A +LFN+++ + L  D     ILI    K G ++    L   M+E    LDV 
Sbjct: 457 KRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVV 516

Query: 351 TFNTLMISF 359
           T+NTL+  F
Sbjct: 517 TYNTLLDGF 525



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 151/352 (42%), Gaps = 29/352 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           ALM F S       P ++V +  LI+G+C +G I  A  L  +M   GC  +V T +T++
Sbjct: 394 ALMYFNSVKEAGLIP-DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTIL 452

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL +   +    KL  EM            P+ +    LIDG CK   +    +LF +M
Sbjct: 453 HGLCKRKMLGEADKLFNEMTERA------LFPDSYTLTILIDGHCKLGNLQNAMELFQKM 506

Query: 127 KDKGI-----NANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K+K I       NTLL    K   +  A  +   M+ + + P   +Y+ L+N  C  G +
Sbjct: 507 KEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHL 566

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A  ++D M  K   P V   + +I GYC++ N  +  +   +MI  GF          
Sbjct: 567 AEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGF---------- 616

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFE 296
             VP+  + N  I G  +  ++ +   L   +E     L  ++F  NS++ G C+    +
Sbjct: 617 --VPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMK 674

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            A  +  K+  + +  D   Y  +I+    +  + +   +   M + G + D
Sbjct: 675 EAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 137/356 (38%), Gaps = 63/356 (17%)

Query: 44  SQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCY 103
           S ++  +   G   +  +C  L+  +RR+G   L      E+VN +         N   +
Sbjct: 117 SAMIHILVRSGRLSDAQSC--LLRMIRRSGVSRL------EIVNSLDSTFSNCGSNDSVF 168

Query: 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK-------KTKLVE-ANRLLELMMQ 155
             LI    + R + +  + F  ++ KG   +   C        +   VE A  + + + +
Sbjct: 169 DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISR 228

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
            G+   ++T   ++N  C  GK+         +  KG  PD+ +Y+ LI+ Y     +EE
Sbjct: 229 SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEE 288

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A  +   M   GF             P  +T N  I+GLCK+G      E+F  +  S  
Sbjct: 289 AFELMNAMPGKGFS------------PGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGL 336

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV--------------------- 314
                 + SL+   CK G      ++F+ +  +++V D+                     
Sbjct: 337 SPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALM 396

Query: 315 --------------VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                         V Y ILI    ++G I     L   M + GCA+DV T+NT++
Sbjct: 397 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTIL 452



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 5/144 (3%)

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           VSR  I+N     F+    C      F  ++ I    +   + E  E F  L      + 
Sbjct: 145 VSRLEIVNSLDSTFSN---CGSNDSVF--DLLIRTYVQARKLREAHEAFTLLRSKGFTVS 199

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           ++  N+LI    + G  E+A  ++ ++S   +  +V   NI+++AL K+G+++K    L 
Sbjct: 200 IDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLS 259

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            ++E G   D+ T+NTL+ ++  K
Sbjct: 260 QVQEKGVYPDIVTYNTLISAYSSK 283


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 185/379 (48%), Gaps = 52/379 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCR--PNVTTCDTLI-TGLRRTGNMNLTLKLH 82
           T+N++I G C  GN+  A +L+++M   G +  P++ T +TLI  G+ + G++   L   
Sbjct: 134 TYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEAL--- 190

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLC-KDRLVDQTKDL-FMEMKDKGINANTLL--- 137
            E+++GM   G    P+V  Y S+I  LC   R+V+  + L  M      +  NTLL   
Sbjct: 191 -EILDGMKLAGP--APDVITYNSIIHALCVAGRVVEAAEILKTMSCSPDLVTFNTLLDGF 247

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK   L  A  +LE M +  + P + TYT L+NG C VG+V VA  L + + R+G++PDV
Sbjct: 248 CKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDV 307

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ L++G CK+  +EEA  + +EM     ++I  EM   N+VP  FT NI + GL K+
Sbjct: 308 IAYTSLVDGLCKSGEIEEAHKLVKEM---SAREILAEMVSINMVPPLFTYNIVLGGLIKD 364

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK-------------------------- 291
           G + + + L   L        V  +N+LI G CK                          
Sbjct: 365 GSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTL 424

Query: 292 ----FGIFEI-----ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
               FG+  +     A  L  ++S K    +VV Y  LI  L K  ++     +L +M  
Sbjct: 425 GSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRG 484

Query: 343 NGCALDVDTFNTLMISFLQ 361
            G ALD   +  L++S + 
Sbjct: 485 QGVALDDFAYRKLIVSMIH 503



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 171/354 (48%), Gaps = 41/354 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF  LI+G C  G    A + ++ +  F   P+V   + LI GL + GN +  +KL 
Sbjct: 61  NLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLF 120

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-------INANT 135
           + M +          P++F Y ++I GLCK   +++ ++L  EM  +G       +  NT
Sbjct: 121 ENMESSR------VNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNT 174

Query: 136 L----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           L    +CK   + EA  +L+ M   G  P + TY  +++  C+ G+V  A  +  +M+  
Sbjct: 175 LINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMS-- 232

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
              PD+ +++ L++G+CK   +  A+ V  EM               N++P+  T  I +
Sbjct: 233 -CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRE------------NILPDVITYTILV 279

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +GLC+ G V     L   +        V  + SL+ G CK G  E A +L  ++S + ++
Sbjct: 280 NGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREIL 339

Query: 312 ADVVA---------YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A++V+         YNI++  L K+G I K   L+  +   G   DV T+NTL+
Sbjct: 340 AEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLI 393



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 148/331 (44%), Gaps = 36/331 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN+L+ GFC  G +  A +++++M      P+V T   L+ GL R G + +   L +E
Sbjct: 238 VTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEE 297

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           +V         Y P+V  Y SL+DGLCK   +++   L  EM                  
Sbjct: 298 IVRQG------YIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMS----------------- 334

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
            A  +L  M+   + P +FTY  +L G    G ++ A++L   +  +G++PDV +Y+ LI
Sbjct: 335 -AREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLI 393

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           +G CK   V EA +++            +EM      P   T    + GLC+ G V +  
Sbjct: 394 DGLCKANRVREACDLA------------DEMASLGCFPNDVTLGSVVFGLCRVGRVDDAW 441

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            L   +        V ++ SLI G CK    + A  + + +  + +  D  AY  LI ++
Sbjct: 442 SLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSM 501

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
              G++ +   +   M   G   D  T  TL
Sbjct: 502 IHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 532



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 150/322 (46%), Gaps = 42/322 (13%)

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           +RR+   +L ++      +  G+  G YK +V  Y  L+D L K     +T  ++ ++  
Sbjct: 1   MRRSSRPDLAIQF----FDWAGEQDG-YKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLH 55

Query: 129 KGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
            G + N +         CK  +   A   L  + +  + P ++ +  L++G    G  + 
Sbjct: 56  SGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQ 115

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----------- 229
           A+ LF++M      PD+F+Y+ +I+G CK+ N+E+A  +  EMI  G K           
Sbjct: 116 AVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTL 175

Query: 230 ---------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
                          +I + MKL    P+  T N  I  LC  G V+E  E+  T+   +
Sbjct: 176 INAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---S 232

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   +  FN+L+ G CK G+   A E+  ++  +N++ DV+ Y IL++ L + GQ++   
Sbjct: 233 CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAF 292

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
           YLL  +   G   DV  + +L+
Sbjct: 293 YLLEEIVRQGYIPDVIAYTSLV 314



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 118/253 (46%), Gaps = 30/253 (11%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMA---------TFGCRPNVTTCDT 64
            +R+ Y P + + + SL+ G C  G I +A +LVK+M+         +    P + T + 
Sbjct: 298 IVRQGYIP-DVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNI 356

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           ++ GL + G+++  + L  ++V         Y P+V  Y +LIDGLCK   V +  DL  
Sbjct: 357 VLGGLIKDGSISKAVSLISDLV------ARGYVPDVVTYNTLIDGLCKANRVREACDLAD 410

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           EM   G   N +        LC+  ++ +A  L+  M ++   P +  YT L++G C   
Sbjct: 411 EMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSD 470

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------KK 230
           +++ A  + D+M  +G   D F+Y  LI        V EAM +  EM+  GF       K
Sbjct: 471 RMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSK 530

Query: 231 IFNEMKLCNVVPE 243
              E  + N V E
Sbjct: 531 TLEEAAMSNSVFE 543



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 101/233 (43%), Gaps = 49/233 (21%)

Query: 4   VLGALMAFGS----------FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF 53
           VLG L+  GS           + R Y P + VT+N+LI G C    +R+A  L  +MA+ 
Sbjct: 357 VLGGLIKDGSISKAVSLISDLVARGYVP-DVVTYNTLIDGLCKANRVREACDLADEMASL 415

Query: 54  GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
           GC PN  T  +++ GL R G ++    L  EM          + PNV  Y SLIDGLCK 
Sbjct: 416 GCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKR------HAPNVVVYTSLIDGLCKS 469

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
             +D                           +A  +L+ M  +G+    F Y  L+    
Sbjct: 470 DRMD---------------------------DACVVLDAMRGQGVALDDFAYRKLIVSMI 502

Query: 174 LVGKVNVAIALFDSMARKGFMPD-----VFSYSVLINGYCKNFNVEEAMNVSR 221
             G+V  A+A++D M  +GF+PD         + + N   +  N+EE  +  R
Sbjct: 503 HGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSVFEWTNLEENASSDR 555


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 175/368 (47%), Gaps = 46/368 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ND TF  ++K  CM   + +A  L++ M   GC PN     TLI  L +   ++  LKL 
Sbjct: 209 NDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLL 268

Query: 83  QEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLCKD 113
           +EM               + G      +              + PN   YG L+ GLCK 
Sbjct: 269 EEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKT 328

Query: 114 RLVDQTKDLFMEMKDKGI-NANTLL---CKKTKLVEANRLL-ELMMQRGLNPVIFTYTPL 168
             +D+ + L  ++    + + NTL+    +  +L EA   + + M+  G  P +FT++ L
Sbjct: 329 CRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTL 388

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           +NG C  G    A+ L + M  KG  P++ +Y++LI+G+CK   +EEA  + REM+  GF
Sbjct: 389 VNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGF 448

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                          T   N  I  LCK+G + E +++F  +    C+  +  FNSLI G
Sbjct: 449 SL------------NTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFG 496

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C+    E A  L+  +  + ++A+ V +N LIHA  + G+I++   L+  M   GC LD
Sbjct: 497 LCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLD 556

Query: 349 VDTFNTLM 356
             T+N L+
Sbjct: 557 EITYNGLI 564



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 173/369 (46%), Gaps = 38/369 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           N V FN+L+ GF   G + +A+  V  KM   G  P+V T  TL+ GL + G     L  
Sbjct: 345 NVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSAL-- 402

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             E+VN M   G   KPN+  Y  LIDG CK   +++   +  EM  KG + NT+     
Sbjct: 403 --ELVNDMDAKG--CKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNAL 458

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  K+ EA  +   M  +G  P IFT+  L+ G C V ++  A+AL+  M  +G 
Sbjct: 459 ISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGV 518

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMIL----------NGFKK------------- 230
           + +  +++ LI+ + +   ++EA+ +  +M+           NG  K             
Sbjct: 519 IANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLG 578

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F EM    + P   TCNI I+G C  G V   +E    +        +  +NSLI G C
Sbjct: 579 LFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLC 638

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A  LF KL  + +  D + YN LI  L +EG      +LL    ENG   +  
Sbjct: 639 KRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDV 698

Query: 351 TFNTLMISF 359
           T+N L+ +F
Sbjct: 699 TWNILVYNF 707



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 177/364 (48%), Gaps = 32/364 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++VL         I + + P ND+T+  L+ G C    I +A  L+ K+      PNV  
Sbjct: 294 NRVLEGAKLVDRMILKGFTP-NDMTYGYLMHGLCKTCRIDEAQALLSKVPG----PNVVH 348

Query: 62  CDTLITGLRRTGNMN-LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
            +TL+ G  R G +N  T  ++ +M+N        Y P+VF + +L++GLCK  L     
Sbjct: 349 FNTLVNGFVRNGRLNEATAFVYDKMINNG------YVPDVFTFSTLVNGLCKKGLFGSAL 402

Query: 121 DLFMEMKDKG----INANTLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L  +M  KG    +N  T+L    CKK +L EA  +L  M+ +G +     Y  L++  
Sbjct: 403 ELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISAL 462

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  GK++ A+ +F  M+ KG  PD+F+++ LI G C+   +E+A+ + R+M+L G     
Sbjct: 463 CKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEG----- 517

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                  V+  + T N  I    + G + E ++L   +    C L    +N LI+  CK 
Sbjct: 518 -------VIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKT 570

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  E    LF ++  K L   ++  NILI+     G++      +  M   G + D+ T+
Sbjct: 571 GAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTY 630

Query: 353 NTLM 356
           N+L+
Sbjct: 631 NSLI 634



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 155/313 (49%), Gaps = 32/313 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  LI GFC +G + +A  ++++M T G   N    + LI+ L + G ++  L +  EM
Sbjct: 419 TYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEM 478

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD---LFMEMKDKGINANTL------ 136
            +         KP++F + SLI GLC+   VD+ +D   L+ +M  +G+ AN++      
Sbjct: 479 SSKG------CKPDIFTFNSLIFGLCR---VDEMEDALALYRDMVLEGVIANSVTFNTLI 529

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               ++ ++ EA +L+  M+ RG      TY  L+   C  G V   + LF+ M RKG  
Sbjct: 530 HAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLT 589

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P + + ++LING+C    V  A+   R+MI  GF             P+  T N  I+GL
Sbjct: 590 PSIITCNILINGFCTAGKVHNALEFMRDMIHRGFS------------PDIVTYNSLINGL 637

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G + E + LF  L+    +     +N+LI   C+ G F+ A  L  +      V + 
Sbjct: 638 CKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPND 697

Query: 315 VAYNILIHALGKE 327
           V +NIL++  GK+
Sbjct: 698 VTWNILVYNFGKQ 710



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 28/287 (9%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           PN + +G ++  LC    VD    L  +M   G   N++        L K+ ++ EA +L
Sbjct: 208 PNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKL 267

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           LE M   G  P + T+  ++ G+C + +V     L D M  KGF P+  +Y  L++G CK
Sbjct: 268 LEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCK 327

Query: 210 NFNVEEAMN----------VSREMILNGFKK----------IFNEMKLCNVVPETFTCNI 249
              ++EA            V    ++NGF +          ++++M     VP+ FT + 
Sbjct: 328 TCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFST 387

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            ++GLCK G     +EL   ++   C+  +  +  LI G CK G  E A  +  ++  K 
Sbjct: 388 LVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKG 447

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              + V YN LI AL K G+I +   +   M   GC  D+ TFN+L+
Sbjct: 448 FSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLI 494



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 26/245 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V +N+LI   C  G I +A  +  +M++ GC+P++ T ++LI GL R   M   L L
Sbjct: 450 LNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALAL 509

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           +++MV       G+   N   + +LI    +   + +   L  +M  +G     I  N L
Sbjct: 510 YRDMV-----LEGVIA-NSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGL 563

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK   + +   L E M+++GL P I T   L+NG+C  GKV+ A+     M  +GF
Sbjct: 564 IKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGF 623

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ +Y+ LING CK   ++EA+N            +F +++   + P++ T N  I  
Sbjct: 624 SPDIVTYNSLINGLCKRGRIQEALN------------LFEKLQAEGIQPDSITYNTLICW 671

Query: 254 LCKNG 258
           LC+ G
Sbjct: 672 LCREG 676



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 114/257 (44%), Gaps = 27/257 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  AL  FG    +  +P +  TFNSLI G C    + DA  L + M   G   N  T 
Sbjct: 467 KIHEALDMFGEMSSKGCKP-DIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTF 525

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI    R G +   LKL  +M+     F G     +  Y  LI  LCK   V++   L
Sbjct: 526 NTLIHAFLRRGEIQEALKLVNDML-----FRGCPLDEI-TYNGLIKALCKTGAVEKGLGL 579

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EM  KG+  + +         C   K+  A   +  M+ RG +P I TY  L+NG C 
Sbjct: 580 FEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCK 639

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G++  A+ LF+ +  +G  PD  +Y+ LI   C+    ++A  +    + NGF      
Sbjct: 640 RGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGF------ 693

Query: 235 MKLCNVVPETFTCNIFI 251
                 VP   T NI +
Sbjct: 694 ------VPNDVTWNILV 704



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 14/200 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFN+LI  F   G I++A +LV  M   GC  +  T + LI  L +TG +   L L 
Sbjct: 521 NSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLF 580

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM+       G+  P++     LI+G C    V    +   +M  +G + + +      
Sbjct: 581 EEMIRK-----GL-TPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLI 634

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+ ++ EA  L E +   G+ P   TY  L+   C  G  + A  L       GF+
Sbjct: 635 NGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFV 694

Query: 195 PDVFSYSVLINGYCKNFNVE 214
           P+  ++++L+  + K  N E
Sbjct: 695 PNDVTWNILVYNFGKQSNSE 714



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 28/234 (11%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+ +G++P  +T+  ++   C+V +V+ A  L   M + G +P+   Y  LI+   K   
Sbjct: 201 MLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDR 260

Query: 213 VEEAMNVSREMILNG-----------------------FKKIFNEMKLCNVVPETFTCNI 249
           V+EA+ +  EM L G                         K+ + M L    P   T   
Sbjct: 261 VDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGY 320

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG-IFEIASELFNKLSCK 308
            + GLCK   + E   L   +   N    V  FN+L+ G  + G + E  + +++K+   
Sbjct: 321 LMHGLCKTCRIDEAQALLSKVPGPN----VVHFNTLVNGFVRNGRLNEATAFVYDKMINN 376

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             V DV  ++ L++ L K+G       L+  M+  GC  +++T+  L+  F +K
Sbjct: 377 GYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKK 430


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 175/372 (47%), Gaps = 38/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   FN LI  +   G +  A  + + M   G  P+  T  T+I+ L R G ++  L   
Sbjct: 345 NKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKF 404

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             MV    D G    P+   YG LI G C    + + K+L  EM +K I    +      
Sbjct: 405 NHMV----DIG--VPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSI 458

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+ ++ E   ++++M+Q G  P + T+  L+ GYCLVG +  A AL D+MA  G 
Sbjct: 459 INNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGI 518

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KK 230
            P+ + Y  L++GYCKN  +++A+ V R+M              IL+G          KK
Sbjct: 519 EPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKK 578

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F+EM          T  + + GLC+N    E   L   L   N +  +  FN +I    
Sbjct: 579 MFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMF 638

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A ELF+ +S   LV ++  Y+++I  L KE   ++ + L +S+E++G A D  
Sbjct: 639 KVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSR 698

Query: 351 TFNTLMISFLQK 362
             N ++   L K
Sbjct: 699 LLNHIVRMLLNK 710



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 174/394 (44%), Gaps = 57/394 (14%)

Query: 16  RRCYRP----------------LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV 59
           RR +RP                 +D ++ SLI GF  +G +  A  L  +M   G  P +
Sbjct: 111 RRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKI 169

Query: 60  TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
             C+++I  L +   M+    + Q+MV+      GI  P++F Y  +IDGLCK + +D+ 
Sbjct: 170 LICNSIIKELCKMKEMDKAESIVQKMVD-----SGI-APDLFTYSLIIDGLCKSKAMDKA 223

Query: 120 KDLFMEMKDKGINANTLLCK--------KTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
           + +  +M + G   N++                E+ R+ + M   G+ P +      ++ 
Sbjct: 224 ERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHA 283

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN--VEEAMNVSREMILNGFK 229
               G+ N A  +FDSM  KG  PD+ SYS +++GY    +  + +  N+   M+  G  
Sbjct: 284 LFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIA 343

Query: 230 K-----------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
                                   IF +M+   ++P+T T    I  LC+ G + + +  
Sbjct: 344 PNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 403

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY-NILIHALG 325
           F  +          ++  LI+GCC  G    A EL +++  K++    V Y + +I+ L 
Sbjct: 404 FNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLC 463

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           KEG++ +   ++  M + G   +V TFN+LM  +
Sbjct: 464 KEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGY 497



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 157/371 (42%), Gaps = 41/371 (11%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N +T+NSLI G+ + G   ++ ++ K+M++ G  P V  C++ I  L + G  N   
Sbjct: 236 RP-NSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAK 294

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL--CKDRLVDQTKDLFMEMKDKGINANTLL 137
            +   MV       G  KP++  Y +++ G     D  +    ++F  M  KGI  N  +
Sbjct: 295 CIFDSMV-----LKGP-KPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHV 348

Query: 138 --------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                    +   + +A  + E M  +G+ P   T+  +++  C +G+++ A+  F+ M 
Sbjct: 349 FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMV 408

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---------------ILNGF------ 228
             G  P    Y  LI G C +  + +A  +  EM               I+N        
Sbjct: 409 DIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRV 468

Query: 229 ---KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
              K I + M      P   T N  ++G C  G++ E   L   +     E    I+ +L
Sbjct: 469 AEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTL 528

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           + G CK G  + A  +F  +  K +    V Y+I++H L +  +      +   M E+G 
Sbjct: 529 VDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGT 588

Query: 346 ALDVDTFNTLM 356
            + + T+  ++
Sbjct: 589 TVSIHTYGVVL 599



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 158/347 (45%), Gaps = 33/347 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ +I G C    +  A +++++M   G RPN  T ++LI G   +G  N ++++ ++ 
Sbjct: 206 TYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQ- 264

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
              M   G I  P V    S I  L K    ++ K +F  M  KG     I+ +T+L   
Sbjct: 265 ---MSSCGVI--PTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 319

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
                + L + + +  LM+ +G+ P    +  L+N Y   G ++ A+ +F+ M  KG +P
Sbjct: 320 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 379

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D  +++ +I+  C+   +++A++             FN M    V P        I G C
Sbjct: 380 DTVTFATVISSLCRIGRLDDALHK------------FNHMVDIGVPPSEAVYGCLIQGCC 427

Query: 256 KNGHVLEVMELFPTLEISNCELF---VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            +G +++  EL    E+ N ++    V+ F+S+I   CK G      ++ + +       
Sbjct: 428 NHGELVKAKELIS--EMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRP 485

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +VV +N L+      G +++   LL +M   G   +   + TL+  +
Sbjct: 486 NVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGY 532



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 24/237 (10%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
             R+      R   P I TY  L++ Y  V + ++ +A+   + + G  PD FSYS LI 
Sbjct: 84  GQRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIY 142

Query: 206 GYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLCNVVP 242
           G+ K+  V++A  +  EM+  G                        + I  +M    + P
Sbjct: 143 GFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAP 202

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           + FT ++ IDGLCK+  + +   +   +  +        +NSLI G    G++  +  +F
Sbjct: 203 DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVF 262

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            ++S   ++  V   N  IHAL K G+  +   +  SM   G   D+ +++T++  +
Sbjct: 263 KQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 319


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 177/350 (50%), Gaps = 26/350 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTFN+LI   C  G      +++ +M   GC P++    T+I G+ + G+    L+
Sbjct: 296 PPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGH----LE 351

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
           +  E++N M  +G   KPNV CY +L+ GLC     ++T++L  EM DK      +  N 
Sbjct: 352 VAHEILNRMPSYG--LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNI 409

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+   C+   +     LLE M++ G  P + TYT ++NG+C  G ++ A+ L  SM   G
Sbjct: 410 LVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 469

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+  SY++++ G C      +A ++  +MI  G          C + P TF  N  I+
Sbjct: 470 CKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG----------CPLNPITF--NTLIN 517

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK G V + +EL   + ++ C   +  ++++I G  K G  + A EL N +  K +  
Sbjct: 518 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 577

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + + Y+ +  AL +EG+I K   +  ++++     D   +N ++ S  ++
Sbjct: 578 NTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKR 627



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 30/288 (10%)

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------LCKKTKLVEANRLLELMMQR 156
           Y +++ G C+   ++  + L   +     NA T       LC + ++ +A  +L+ M +R
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVPVPP-NAYTYFPVVRALCARGRIADALAVLDEMPRR 188

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G  P+   Y  +L   C  G    A+ + + +  +G   DV + ++++N  C   +V+EA
Sbjct: 189 GCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEA 248

Query: 217 MNVSREM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDG 253
           +++ R++              +L G          +++  EM      P   T N  I  
Sbjct: 249 LHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISY 308

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LC+NG    V E+   +    C   + ++ ++I G CK G  E+A E+ N++    L  +
Sbjct: 309 LCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPN 368

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           VV YN L+  L    + ++   LL  M +  C LD  TFN L+  F Q
Sbjct: 369 VVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 416



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 145/345 (42%), Gaps = 31/345 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+++ G+C  G +  A +L    A     PN  T   ++  L   G +   L +  EM 
Sbjct: 130 YNAMVAGYCRAGQLESARRLA---AAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 87  N-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLL--- 137
             G      +Y         +++  C+         +  ++  +G      N N +L   
Sbjct: 187 RRGCAPIPPMYH-------VILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAI 239

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C +  + EA  LL  +   G  P + +Y  +L G C+  +      L + M R    P++
Sbjct: 240 CDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNI 299

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +++ LI+  C+N   E    V  +M+ +G              P+       IDG+CK 
Sbjct: 300 VTFNTLISYLCRNGLFERVHEVLAQMVEHG------------CTPDIRMYATIIDGICKE 347

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           GH+    E+   +     +  V  +N+L++G C    +E   EL  ++  K+   D V +
Sbjct: 348 GHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTF 407

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           NIL+    + G + +   LL  M E+GC  DV T+ T++  F ++
Sbjct: 408 NILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKE 452



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 26/254 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+ ++I GFC EG I +A  L+K M   GC+PN  +   ++ GL           L  +
Sbjct: 440 ITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQ 499

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+            N   + +LI+ LCK  LV+Q  +L  +M   G + + +        
Sbjct: 500 MIQQGCPL------NPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 553

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K  K  EA  LL +M+ +G++P    Y+ + +     G++N  I +FD++       D
Sbjct: 554 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSD 613

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
              Y+ +I+  CK    E A+     M+ +G             VP   T  I I GL  
Sbjct: 614 AVLYNAVISSLCKRGETERAIEFLAYMVSSG------------CVPNESTYTILIRGLAS 661

Query: 257 NGHVLEVMELFPTL 270
            G V E  E+   L
Sbjct: 662 EGFVKEAQEMLTEL 675


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 168/357 (47%), Gaps = 46/357 (12%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F + ++R Y P N +T N+LIKG C  G I+ A     K+   G + +  +  TLI
Sbjct: 115 AFSVFANILKRGYHP-NAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLI 173

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G      +L +++       G   KP++  Y ++I  LCK++L+    DL+ EM
Sbjct: 174 NGLCKAGETKAVARLLRKLE------GHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEM 227

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
             KGI+ N                           +FTYT L++G+C++G +  A +L +
Sbjct: 228 IVKGISPN---------------------------VFTYTTLIHGFCIMGNLKEAFSLLN 260

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M  K   PDV+++++LI+   K   ++EAM++            F EMK  N+ P   T
Sbjct: 261 EMKLKNINPDVYTFNILIDALAKEGKIDEAMSL------------FEEMKHKNMFPNIVT 308

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
               IDGLCKN H+   + L   ++    +  V  +  L+   CK G  E A + F  L 
Sbjct: 309 YTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLL 368

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            K    +V  YN++I+ L K G       L   ME  GC  +  TF T++ + L+K+
Sbjct: 369 VKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKD 425



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 151/331 (45%), Gaps = 45/331 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T + LI  FC   +I  A  +   +   G  PN  T +TLI GL   G +   L  H ++
Sbjct: 98  TLSILINCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKV 157

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           V   G     ++ +   YG+LI+GLCK                           +TK V 
Sbjct: 158 V-AQG-----FQLDQVSYGTLINGLCK-------------------------AGETKAVA 186

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
             RLL  +    + P +  YT +++  C    +  A  L+  M  KG  P+VF+Y+ LI+
Sbjct: 187 --RLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIH 244

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G+C   N++EA +            + NEMKL N+ P+ +T NI ID L K G + E M 
Sbjct: 245 GFCIMGNLKEAFS------------LLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMS 292

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           LF  ++  N    +  + SLI G CK    E A  L  K+  + +  +V +Y IL+ AL 
Sbjct: 293 LFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALC 352

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K G+++        +   G  L+V T+N ++
Sbjct: 353 KGGRLENAKQFFQHLLVKGYHLNVRTYNVMI 383



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 14/217 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+ +LI GFC+ GN+++A  L+ +M      P+V T + LI  L + G ++  + L 
Sbjct: 235 NVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLF 294

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM +       ++ PN+  Y SLIDGLCK+  +++   L  +MK++GI  N        
Sbjct: 295 EEMKHK-----NMF-PNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILL 348

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  +L  A +  + ++ +G +  + TY  ++NG C  G     + L   M  KG M
Sbjct: 349 DALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCM 408

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           P+  ++  +I    +    ++A    REMI  G  K+
Sbjct: 409 PNAITFKTIICALLEKDENDKAEKFLREMIARGLLKV 445



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 12/200 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P  F +  +L+      +    I+LF      G  PD+ + S+LIN +C   ++  A +V
Sbjct: 59  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSV 118

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
              ++  G+             P   T N  I GLC  G +   +     +     +L  
Sbjct: 119 FANILKRGYH------------PNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQ 166

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + +LI G CK G  +  + L  KL   ++  D+V Y  +IH L K   +     L   
Sbjct: 167 VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSE 226

Query: 340 MEENGCALDVDTFNTLMISF 359
           M   G + +V T+ TL+  F
Sbjct: 227 MIVKGISPNVFTYTTLIHGF 246



 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 60/160 (37%), Gaps = 35/160 (21%)

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE-------------ISNC--- 275
           FN M L    P TF  N  +  L KN     V+ LF   E             + NC   
Sbjct: 49  FNRMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCH 108

Query: 276 --------ELFVEI-----------FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
                    +F  I            N+LI+G C  G  + A    +K+  +    D V+
Sbjct: 109 LTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVS 168

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y  LI+ L K G+ K    LL  +E +    D+  + T++
Sbjct: 169 YGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTII 208



 Score = 38.1 bits (87), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 29/65 (44%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T+N +I G C  G   D   L  KM   GC PN  T  T+I  L      +   K 
Sbjct: 374 LNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAEKF 433

Query: 82  HQEMV 86
            +EM+
Sbjct: 434 LREMI 438


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 170/357 (47%), Gaps = 31/357 (8%)

Query: 9   MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           +AF    R          +  LI   C    + +A  +  K+   G    +  C+ L+  
Sbjct: 100 LAFSELSRLKSSKFTPNVYGELIIVLCKMELVEEALSMYHKV---GAALTIQACNVLLYV 156

Query: 69  LRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           L +TG   L  ++++EM+ NG+        P+V  +G+LIDG C+   + + +++F EM+
Sbjct: 157 LVKTGRFELLWRIYEEMISNGLS-------PSVITFGTLIDGCCRQGDLLRAQEMFDEMR 209

Query: 128 DKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
            KGI    +        LC   K+ EA  +   M + G+ P ++TY  L++GYC +    
Sbjct: 210 VKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAK 269

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
            A+ L+  M  +G +PDV ++ +LI+G CK   ++ A N            +F  M   +
Sbjct: 270 QALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARN------------LFVNMIKFS 317

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           V P     N  ID  CK G V E M LF  LE       V  ++ LIRG C     E A 
Sbjct: 318 VTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAG 377

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +F K++ + ++A+ V YN LI    KEG++ K   +   M ENG   +V TF+TL+
Sbjct: 378 NIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLI 434



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 165/340 (48%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TF +LI G C +G++  A ++  +M   G  P V     LI GL     +     +H+ 
Sbjct: 183 ITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRA 242

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M        G+Y PNV+ Y +L+DG CK     Q   L+ +M  +G+  + +        
Sbjct: 243 MREV-----GVY-PNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDG 296

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  ++  A  L   M++  + P I  Y  L++ YC VG V+ A+ALF  + R    PD
Sbjct: 297 LCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPD 356

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           VF+YS+LI G C     EEA N+        F+K+  E  L N V    T N  IDG CK
Sbjct: 357 VFTYSILIRGLCSVSRTEEAGNI--------FEKMTKEGILANSV----TYNSLIDGCCK 404

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + + +E+   +  +  E  V  F++LI G CK    + A  +++++  K+L  DVV 
Sbjct: 405 EGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVT 464

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y  +I    K G +K+   L   M +NG   +  T + L+
Sbjct: 465 YTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLL 504



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 156/321 (48%), Gaps = 39/321 (12%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF  LI G C  G ++ A  L   M  F   PN+   ++LI    + G+++  + L  E
Sbjct: 288 VTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLE 347

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           +            P+VF Y  LI GLC     ++  ++F +M  +GI AN++        
Sbjct: 348 LERFE------VSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDG 401

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+ +A  +   M + G+ P + T++ L++GYC +  +  A+ ++  M  K   PD
Sbjct: 402 CCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPD 461

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ +I+G+CK  +++EA+ +  +M+ NG            + P  +T +  +DGLCK
Sbjct: 462 VVTYTAMIDGHCKYGSMKEALKLYSDMLDNG------------ITPNCYTISCLLDGLCK 509

Query: 257 NGHVLEVMELF-PTLEISNCELFVE------------IFNSLIRGCCKFGIFEIASELFN 303
           +G + + +ELF   +E       V+             + +LI G C+ G F  A +LF+
Sbjct: 510 DGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFS 569

Query: 304 KLSCKNLVADVVAYNILIHAL 324
            +    L  D V Y +++  L
Sbjct: 570 DMRRYGLQPDEVIYVVMLRGL 590



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 164/387 (42%), Gaps = 62/387 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           + +  LI+G C +  I +A  + + M   G  PNV T +TL+ G  +  N    L+L+Q+
Sbjct: 218 IVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQD 277

Query: 85  M---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLCKDRL 115
           M               ++G+  FG +                PN+  Y SLID  CK   
Sbjct: 278 MLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGD 337

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           V +   LF+E++   ++ +          LC  ++  EA  + E M + G+     TY  
Sbjct: 338 VSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNS 397

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L++G C  GK++ A+ +   M   G  P+V ++S LI+GYCK  N++ AM +  EM++  
Sbjct: 398 LIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKS 457

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                         P+  T    IDG CK G + E ++L+  +  +         + L+ 
Sbjct: 458 LS------------PDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLD 505

Query: 288 GCCKFGIFEIASELFNKL-------------SCKNLVADVVAYNILIHALGKEGQIKKEN 334
           G CK G    A ELF +                K  + + VAY  LIH L ++GQ  K  
Sbjct: 506 GLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAV 565

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQ 361
            L   M   G   D   +  ++    Q
Sbjct: 566 KLFSDMRRYGLQPDEVIYVVMLRGLFQ 592



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 95/205 (46%), Gaps = 27/205 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+NSLI G C EG +  A ++  +M   G  PNV T  TLI G  +  N+   + ++
Sbjct: 391 NSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIY 450

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EMV           P+V  Y ++IDG CK   + +   L+ +M D GI  N        
Sbjct: 451 SEMVIKS------LSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLL 504

Query: 137 --LCKKTKLVEANRL----LELMMQR------GLNPVI---FTYTPLLNGYCLVGKVNVA 181
             LCK  K+ +A  L    +E    R      G  P +     YT L++G C  G+ + A
Sbjct: 505 DGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKA 564

Query: 182 IALFDSMARKGFMPDVFSYSVLING 206
           + LF  M R G  PD   Y V++ G
Sbjct: 565 VKLFSDMRRYGLQPDEVIYVVMLRG 589



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 115/264 (43%), Gaps = 44/264 (16%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ 155
           + PNV  YG LI  LCK  LV++   ++ ++   G       C        N LL ++++
Sbjct: 113 FTPNV--YGELIIVLCKMELVEEALSMYHKV---GAALTIQAC--------NVLLYVLVK 159

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
                               G+  +   +++ M   G  P V ++  LI+G C+  ++  
Sbjct: 160 -------------------TGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLR 200

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A            +++F+EM++  +VP      I I GLC +  + E   +   +     
Sbjct: 201 A------------QEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGV 248

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              V  +N+L+ G CK    + A  L+  +  + LV DVV + ILI  L K G++K    
Sbjct: 249 YPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARN 308

Query: 336 LLLSMEENGCALDVDTFNTLMISF 359
           L ++M +     ++  +N+L+ ++
Sbjct: 309 LFVNMIKFSVTPNIAVYNSLIDAY 332


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 175/372 (47%), Gaps = 38/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   FN LI  +   G +  A  + + M   G  P+  T  T+I+ L R G ++  L   
Sbjct: 401 NKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKF 460

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             MV    D G    P+   YG LI G C    + + K+L  EM +K I    +      
Sbjct: 461 NHMV----DIG--VPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSI 514

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+ ++ E   ++++M+Q G  P + T+  L+ GYCLVG +  A AL D+MA  G 
Sbjct: 515 INNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGI 574

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KK 230
            P+ + Y  L++GYCKN  +++A+ V R+M              IL+G          KK
Sbjct: 575 EPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKK 634

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F+EM          T  + + GLC+N    E   L   L   N +  +  FN +I    
Sbjct: 635 MFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMF 694

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A ELF+ +S   LV ++  Y+++I  L KE   ++ + L +S+E++G A D  
Sbjct: 695 KVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSR 754

Query: 351 TFNTLMISFLQK 362
             N ++   L K
Sbjct: 755 LLNHIVRMLLNK 766



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 174/394 (44%), Gaps = 57/394 (14%)

Query: 16  RRCYRP----------------LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV 59
           RR +RP                 +D ++ SLI GF  +G +  A  L  +M   G  P +
Sbjct: 167 RRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKI 225

Query: 60  TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
             C+++I  L +   M+    + Q+MV+      GI  P++F Y  +IDGLCK + +D+ 
Sbjct: 226 LICNSIIKELCKMKEMDKAESIVQKMVD-----SGI-APDLFTYSLIIDGLCKSKAMDKA 279

Query: 120 KDLFMEMKDKGINANTLLCK--------KTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
           + +  +M + G   N++                E+ R+ + M   G+ P +      ++ 
Sbjct: 280 ERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHA 339

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN--VEEAMNVSREMILNGFK 229
               G+ N A  +FDSM  KG  PD+ SYS +++GY    +  + +  N+   M+  G  
Sbjct: 340 LFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIA 399

Query: 230 K-----------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
                                   IF +M+   ++P+T T    I  LC+ G + + +  
Sbjct: 400 PNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 459

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY-NILIHALG 325
           F  +          ++  LI+GCC  G    A EL +++  K++    V Y + +I+ L 
Sbjct: 460 FNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLC 519

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           KEG++ +   ++  M + G   +V TFN+LM  +
Sbjct: 520 KEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGY 553



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 157/371 (42%), Gaps = 41/371 (11%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N +T+NSLI G+ + G   ++ ++ K+M++ G  P V  C++ I  L + G  N   
Sbjct: 292 RP-NSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAK 350

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL--CKDRLVDQTKDLFMEMKDKGINANTLL 137
            +   MV       G  KP++  Y +++ G     D  +    ++F  M  KGI  N  +
Sbjct: 351 CIFDSMV-----LKGP-KPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHV 404

Query: 138 --------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                    +   + +A  + E M  +G+ P   T+  +++  C +G+++ A+  F+ M 
Sbjct: 405 FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMV 464

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---------------ILNGF------ 228
             G  P    Y  LI G C +  + +A  +  EM               I+N        
Sbjct: 465 DIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRV 524

Query: 229 ---KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
              K I + M      P   T N  ++G C  G++ E   L   +     E    I+ +L
Sbjct: 525 AEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTL 584

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           + G CK G  + A  +F  +  K +    V Y+I++H L +  +      +   M E+G 
Sbjct: 585 VDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGT 644

Query: 346 ALDVDTFNTLM 356
            + + T+  ++
Sbjct: 645 TVSIHTYGVVL 655



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 158/347 (45%), Gaps = 33/347 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ +I G C    +  A +++++M   G RPN  T ++LI G   +G  N ++++ ++ 
Sbjct: 262 TYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQ- 320

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
              M   G I  P V    S I  L K    ++ K +F  M  KG     I+ +T+L   
Sbjct: 321 ---MSSCGVI--PTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 375

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
                + L + + +  LM+ +G+ P    +  L+N Y   G ++ A+ +F+ M  KG +P
Sbjct: 376 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 435

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D  +++ +I+  C+   +++A++             FN M    V P        I G C
Sbjct: 436 DTVTFATVISSLCRIGRLDDALHK------------FNHMVDIGVPPSEAVYGCLIQGCC 483

Query: 256 KNGHVLEVMELFPTLEISNCELF---VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            +G +++  EL    E+ N ++    V+ F+S+I   CK G      ++ + +       
Sbjct: 484 NHGELVKAKELIS--EMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRP 541

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +VV +N L+      G +++   LL +M   G   +   + TL+  +
Sbjct: 542 NVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGY 588


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 161/347 (46%), Gaps = 28/347 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N  ++N +    C  G + +A QL+ +M   GC P+V +  T+I G  + G +   LKL
Sbjct: 251 WNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKL 310

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--- 137
            +EM + G+       KPN + Y  +I  LCK   V + + +  EM  +GI  + ++   
Sbjct: 311 IEEMQIKGL-------KPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTT 363

Query: 138 -----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                CK   +  A RL + M +R ++P   TYT ++ G C  G+V  A  LF  M  K 
Sbjct: 364 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD  +Y+ LI+GYCK   ++EA ++  +M+  G            + P   T     D
Sbjct: 424 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMG------------LTPNIVTYTALAD 471

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK G V    EL   +     EL +  +NSL+ G CK G  + A +L   +       
Sbjct: 472 GLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHP 531

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           D V Y  L+ A  K  ++ + + LL  M +      V TFN LM  F
Sbjct: 532 DAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 578



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 168/362 (46%), Gaps = 27/362 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T +V+ A   F   + +   P ++VT+ +LI G+C EG +++A  L  +M   G  PN+ 
Sbjct: 406 TGRVMEADKLFHEMVCKRLEP-DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIV 464

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   L  GL + G ++   +L  EM     +       N++ Y SL++GLCK   +DQ  
Sbjct: 465 TYTALADGLCKCGEVDTANELLHEMCRKGLEL------NIYTYNSLVNGLCKAGNIDQAV 518

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L  +M+  G + + +         CK  ++V A+ LL  M+ R L P + T+  L+NG+
Sbjct: 519 KLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 578

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C+ G +     L   M  KG MP+  +Y+ LI  YC   N+     + R M   G     
Sbjct: 579 CMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKG----- 633

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                  VVP+  T NI I G CK  ++ E   L   +      L V  +N+LI+G  K 
Sbjct: 634 -------VVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKR 686

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             F  A ELF ++  + LVAD   YNI       EG+++    L     E     D+ T 
Sbjct: 687 KKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTK 746

Query: 353 NT 354
           NT
Sbjct: 747 NT 748



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 158/342 (46%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N +I   C  G + +A +++++M + G  P+     TLI G  + GN++   +L 
Sbjct: 322 NPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLF 381

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM            P+   Y ++I GLC+   V +   LF EM  K +  + +      
Sbjct: 382 DEMQKRK------ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 435

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+ K+ EA  L   M+Q GL P I TYT L +G C  G+V+ A  L   M RKG  
Sbjct: 436 DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLE 495

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            ++++Y+ L+NG CK  N+++A+ + ++M + GF             P+  T    +D  
Sbjct: 496 LNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH------------PDAVTYTTLMDAY 543

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK+  ++   EL   +     +  V  FN L+ G C  G+ E   +L   +  K ++ + 
Sbjct: 544 CKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNA 603

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             YN LI        ++    +   M   G   D +T+N L+
Sbjct: 604 TTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILI 645



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 158/347 (45%), Gaps = 44/347 (12%)

Query: 44  SQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCY 103
            QL+     +G  P V   D     L   G ++   KL  +M+N  G    +   N+F  
Sbjct: 169 EQLIYTYKDWGSDPRVF--DIFFQVLVEAGMLDEARKLFDKMLN-YGLLISVDSCNLF-- 223

Query: 104 GSLIDGLCKDRLVDQTK---DLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
              I  L +D  +D  K    +F+E  + G+  NT         LC+  ++VEA++LL  
Sbjct: 224 ---ISHLSED--LDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQ 278

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M  RG  P + +Y+ ++NGYC VG++   + L + M  KG  P+ ++Y+ +I   CK   
Sbjct: 279 MELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGK 338

Query: 213 VEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFTCNI 249
           V EA  V REMI  G                         ++F+EM+   + P+  T   
Sbjct: 339 VAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTA 398

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            I GLC+ G V+E  +LF  +     E     + +LI G CK G  + A  L N++    
Sbjct: 399 VICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMG 458

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L  ++V Y  L   L K G++   N LL  M   G  L++ T+N+L+
Sbjct: 459 LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLV 505



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 17/188 (9%)

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---KI 231
            G ++ A  LFD M   G +  V S ++ I+   ++              L+G K   K+
Sbjct: 195 AGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSED--------------LDGIKIALKV 240

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F E     V   T + NI    LC+ G V+E  +L   +E+  C   V  ++++I G C+
Sbjct: 241 FVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQ 300

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  +   +L  ++  K L  +   YN +I  L K G++ +   +L  M   G A D   
Sbjct: 301 VGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVI 360

Query: 352 FNTLMISF 359
           + TL+  F
Sbjct: 361 YTTLIDGF 368



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 95/233 (40%), Gaps = 25/233 (10%)

Query: 136 LLCKKTKLVEANRLLELMMQRGL-------NPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
           +L +   L EA +L + M+  GL       N  I   +  L+G      + +A+ +F   
Sbjct: 191 VLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDG------IKIALKVFVEF 244

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
              G   +  SY+++ +  C+   V EA  +  +M L G             +P+  + +
Sbjct: 245 PEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRG------------CIPDVISYS 292

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             I+G C+ G +  V++L   ++I   +     +N +I   CK G    A  +  ++  +
Sbjct: 293 TVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISE 352

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            +  D V Y  LI    K G +     L   M++   + D  T+  ++    Q
Sbjct: 353 GIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQ 405


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 189/397 (47%), Gaps = 48/397 (12%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            S  LG LM  G      + P +  TF SLI GFC+   I +A  +V +M   G +P+V 
Sbjct: 125 ASSFLGKLMKLG------FEP-DIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVV 177

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
              T+I  L + G+++  L L  +M N    +G   +P+V  Y SL++GLC         
Sbjct: 178 IYTTIIDSLCKNGHVDNALSLFNQMEN----YG--IRPDVVMYTSLVNGLCNSGRWRDAD 231

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L   M  + I  + +          K+ KL++A  L   M+Q  + P IFTYT L+NG 
Sbjct: 232 LLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGL 291

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------- 223
           C+ G+++ A  +F  M  KG  PDV +Y+ LING+CK   VE+AM +  EM         
Sbjct: 292 CMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNT 351

Query: 224 -----ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                ++ GF         +++F  M    V P   T N+ +  LC NG V + + +F  
Sbjct: 352 ITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFED 411

Query: 270 L---EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
           +   EI      +  +N L+ G C  G  E A  +F  +  +++   ++ Y I+I  + K
Sbjct: 412 MQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCK 471

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            G++K    L  S+   G   +V T+ T MIS L +E
Sbjct: 472 AGKVKDALNLFCSLPSKGVKPNVVTYTT-MISGLFRE 507



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 176/348 (50%), Gaps = 24/348 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F        RP + V + SL+ G C  G  RDA  L++ M     +P+V T + LI
Sbjct: 195 ALSLFNQMENYGIRP-DVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALI 253

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
               + G +    +L+ EM+           PN+F Y SLI+GLC +  +D+ + +F  M
Sbjct: 254 DAFVKEGKLLDAKELYNEMIQMS------IAPNIFTYTSLINGLCMEGRLDEARQMFYLM 307

Query: 127 KDKG----INANTLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           + KG    + A T L    CK  K+ +A ++   M Q+GL     TYT L+ G+ LVGK 
Sbjct: 308 ETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKP 367

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           NVA  +F  M  +G  P++ +Y+VL++  C N  V +A+ +  +M          + ++ 
Sbjct: 368 NVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDM---------QKREID 418

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            V P   T N+ + GLC NG + + + +F  ++  + ++ +  +  +I+G CK G  + A
Sbjct: 419 GVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDA 478

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
             LF  L  K +  +VV Y  +I  L +EG + + + L   M+E+G +
Sbjct: 479 LNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 132/270 (48%), Gaps = 20/270 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN-----ANTLL---CKKTKLVEANRL 149
           P++  +  L++ + K +  D   +L   ++  G++      N L+   C+ ++   A+  
Sbjct: 69  PSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSF 128

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +M+ G  P IFT+T L+NG+CL  ++  A+++ + M   G  PDV  Y+ +I+  CK
Sbjct: 129 LGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCK 188

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           N +V+ A++            +FN+M+   + P+       ++GLC +G   +   L   
Sbjct: 189 NGHVDNALS------------LFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRG 236

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     +  V  FN+LI    K G    A EL+N++   ++  ++  Y  LI+ L  EG+
Sbjct: 237 MMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGR 296

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + +   +   ME  GC  DV  + +L+  F
Sbjct: 297 LDEARQMFYLMETKGCFPDVVAYTSLINGF 326



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 103/247 (41%), Gaps = 47/247 (19%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL-------------------- 184
           EA  L   M++    P I  +T LLN    + K +V I L                    
Sbjct: 54  EALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLM 113

Query: 185 ---------------FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
                             + + GF PD+F+++ LING+C    +EEAM++  +M+  G K
Sbjct: 114 NCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIK 173

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                       P+       ID LCKNGHV   + LF  +E       V ++ SL+ G 
Sbjct: 174 ------------PDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGL 221

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C  G +  A  L   +  + +  DV+ +N LI A  KEG++     L   M +   A ++
Sbjct: 222 CNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNI 281

Query: 350 DTFNTLM 356
            T+ +L+
Sbjct: 282 FTYTSLI 288


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 175/372 (47%), Gaps = 38/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   FN LI  +   G +  A  + + M   G  P+  T  T+I+ L R G ++  L   
Sbjct: 259 NKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKF 318

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             MV    D G    P+   YG LI G C    + + K+L  EM +K I    +      
Sbjct: 319 NHMV----DIG--VPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSI 372

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+ ++ E   ++++M+Q G  P + T+  L+ GYCLVG +  A AL D+MA  G 
Sbjct: 373 INNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGI 432

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KK 230
            P+ + Y  L++GYCKN  +++A+ V R+M              IL+G          KK
Sbjct: 433 EPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKK 492

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F+EM          T  + + GLC+N    E   L   L   N +  +  FN +I    
Sbjct: 493 MFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMF 552

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A ELF+ +S   LV ++  Y+++I  L KE   ++ + L +S+E++G A D  
Sbjct: 553 KVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSR 612

Query: 351 TFNTLMISFLQK 362
             N ++   L K
Sbjct: 613 LLNHIVRMLLNK 624



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 164/362 (45%), Gaps = 40/362 (11%)

Query: 29  SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
           SLI GF  +G +  A  L  +M   G  P +  C+++I  L +   M+    + Q+MV+ 
Sbjct: 53  SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVD- 111

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK--------K 140
                GI  P++F Y  +IDGLCK + +D+ + +  +M + G   N++            
Sbjct: 112 ----SGI-APDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSIS 166

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
               E+ R+ + M   G+ P +      ++     G+ N A  +FDSM  KG  PD+ SY
Sbjct: 167 GMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISY 226

Query: 201 SVLINGYCKNFN--VEEAMNVSREMILNGFKK-----------------------IFNEM 235
           S +++GY    +  + +  N+   M+  G                          IF +M
Sbjct: 227 STMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDM 286

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           +   ++P+T T    I  LC+ G + + +  F  +          ++  LI+GCC  G  
Sbjct: 287 QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGEL 346

Query: 296 EIASELFNKLSCKNLVADVVAY-NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
             A EL +++  K++    V Y + +I+ L KEG++ +   ++  M + G   +V TFN+
Sbjct: 347 VKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNS 406

Query: 355 LM 356
           LM
Sbjct: 407 LM 408



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 148/314 (47%), Gaps = 31/314 (9%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRL 115
           P + T + LI   RR    +L L +   ++ NG+G       P+ F Y SLI G  KD  
Sbjct: 12  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLG-------PDDFSY-SLIYGFVKDGE 63

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           VD+   LF+EM ++G+    L        LCK  ++ +A  +++ M+  G+ P +FTY+ 
Sbjct: 64  VDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSL 123

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +++G C    ++ A  + + M   G  P+  +Y+ LI+GY            S   + N 
Sbjct: 124 IIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGY------------SISGMWNE 171

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
             ++F +M  C V+P    CN FI  L K+G   E   +F ++ +   +  +  +++++ 
Sbjct: 172 SVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLH 231

Query: 288 GCCKFGIFEIAS--ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           G        +A    +FN +  K +  +   +NILI+A  + G + K   +   M+  G 
Sbjct: 232 GYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGM 291

Query: 346 ALDVDTFNTLMISF 359
             D  TF T++ S 
Sbjct: 292 IPDTVTFATVISSL 305



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 157/371 (42%), Gaps = 41/371 (11%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N +T+NSLI G+ + G   ++ ++ K+M++ G  P V  C++ I  L + G  N   
Sbjct: 150 RP-NSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAK 208

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL--CKDRLVDQTKDLFMEMKDKGINANTLL 137
            +   MV       G  KP++  Y +++ G     D  +    ++F  M  KGI  N  +
Sbjct: 209 CIFDSMV-----LKGP-KPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHV 262

Query: 138 --------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                    +   + +A  + E M  +G+ P   T+  +++  C +G+++ A+  F+ M 
Sbjct: 263 FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMV 322

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---------------ILNGF------ 228
             G  P    Y  LI G C +  + +A  +  EM               I+N        
Sbjct: 323 DIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRV 382

Query: 229 ---KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
              K I + M      P   T N  ++G C  G++ E   L   +     E    I+ +L
Sbjct: 383 AEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTL 442

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           + G CK G  + A  +F  +  K +    V Y+I++H L +  +      +   M E+G 
Sbjct: 443 VDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGT 502

Query: 346 ALDVDTFNTLM 356
            + + T+  ++
Sbjct: 503 TVSIHTYGVVL 513



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 158/347 (45%), Gaps = 33/347 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ +I G C    +  A +++++M   G RPN  T ++LI G   +G  N ++++ ++ 
Sbjct: 120 TYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQ- 178

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
              M   G I  P V    S I  L K    ++ K +F  M  KG     I+ +T+L   
Sbjct: 179 ---MSSCGVI--PTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 233

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
                + L + + +  LM+ +G+ P    +  L+N Y   G ++ A+ +F+ M  KG +P
Sbjct: 234 ATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIP 293

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D  +++ +I+  C+   +++A++             FN M    V P        I G C
Sbjct: 294 DTVTFATVISSLCRIGRLDDALHK------------FNHMVDIGVPPSEAVYGCLIQGCC 341

Query: 256 KNGHVLEVMELFPTLEISNCELF---VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            +G +++  EL    E+ N ++    V+ F+S+I   CK G      ++ + +       
Sbjct: 342 NHGELVKAKELIS--EMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRP 399

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +VV +N L+      G +++   LL +M   G   +   + TL+  +
Sbjct: 400 NVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGY 446


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 169/346 (48%), Gaps = 29/346 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N +I GF  EG +  A  L  +M   G  P+V T +T+I GL +   ++    + Q+
Sbjct: 194 VSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQ 250

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV       G+ KPN   Y ++IDGLCK + VD  + +F +M DKG+  + +        
Sbjct: 251 MVEK-----GV-KPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDG 304

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   +  A  + + M+ RG+ P   TY  +++G C    ++ A  +F  M  KG  PD
Sbjct: 305 LCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPD 364

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+++I+G CK  +V+ A  V ++MI  G K            P   T N  I G   
Sbjct: 365 NLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVK------------PNNGTYNCLIHGYLS 412

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G   EV++    +   + E  V  +  L+   CK G    A  LF+ +  K +   V  
Sbjct: 413 TGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTI 472

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           Y I++H  GK+G + + + LL  M  NG + +   FNT++ ++ ++
Sbjct: 473 YGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKR 518



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 182/371 (49%), Gaps = 37/371 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   FN++I  +     I +   +  KM   G  PNV T  TLI  L + G ++  +   
Sbjct: 504 NHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQF 563

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M+N      G+  PN   + SL+ GLC     ++ ++LF+EM ++GI  + +      
Sbjct: 564 NQMINE-----GV-TPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVL 617

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+ +++EA RL++ M+  GL P + +Y  L++G+C   +++ A+ L D M   G  
Sbjct: 618 CNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLK 677

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKI 231
           P++ SY+ L++GYCK   ++ A  + REM              ILNG          +++
Sbjct: 678 PNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAREL 737

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           +  M     +    T +I +DG CKN    E  ++F +L   + +L +  FN +I G  K
Sbjct: 738 YVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFK 797

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A +LF  +    LV  VV Y ++   L +EG +++ + L   ME++G A +   
Sbjct: 798 GGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHM 857

Query: 352 FNTLMISFLQK 362
            N L+   L +
Sbjct: 858 LNALIRKLLDR 868



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 187/412 (45%), Gaps = 73/412 (17%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   + +  +P N+VT+N++I G C    +  A  + +KM   G +P+  T +T+I GL 
Sbjct: 248 FQQMVEKGVKP-NNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLC 306

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           +   ++    + Q+M+    D G   KP+   Y ++IDGLCK + +D+ + +F +M DKG
Sbjct: 307 KAQAVDRAEGVFQQMI----DRG--VKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKG 360

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRG------------------------- 157
           +  + L        LCK   +  A  + + M+ +G                         
Sbjct: 361 VKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVV 420

Query: 158 ----------LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
                     L P +FTY  LL+  C  GK N A +LFDSM RKG  P V  Y ++++GY
Sbjct: 421 QRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGY 480

Query: 208 CKNFNVEEAMNVSREMILNGFK---KIFN--------------------EMKLCNVVPET 244
            K   + E  ++   M+ NG     +IFN                    +MK   + P  
Sbjct: 481 GKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNV 540

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T    ID LCK G V + +  F  +          +FNSL+ G C    +E   ELF +
Sbjct: 541 VTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLE 600

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +  + +  D+V +N ++  L KEG++ +   L+ SM   G   DV ++NTL+
Sbjct: 601 MLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLI 652



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 171/382 (44%), Gaps = 33/382 (8%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITG 68
           AFG  ++  +R ++D+  N L+KG C    + +A   L+++M   GCR  V + +TL+ G
Sbjct: 106 AFGLILKTGWR-VDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKG 164

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-- 126
           L          +L   MV+G         P+V  Y  +I+G   +  VD+   LF+EM  
Sbjct: 165 LCDRRRAEEARELLHMMVDGQDSS---CSPDVVSYNIVINGFFNEGQVDKAYSLFLEMGV 221

Query: 127 KDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
               +  NT+   LCK  ++  A  + + M+++G+ P   TY  +++G C   +V++A  
Sbjct: 222 SPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEG 281

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK------------- 230
           +F  M  KG  P   +Y+ +I+G CK   V+ A  V ++MI  G K              
Sbjct: 282 VFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLC 341

Query: 231 ----------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                     +F +M    V P+  T  I IDGLCK   V     +F  +     +    
Sbjct: 342 KAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNG 401

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            +N LI G    G +E   +   ++S  +L  DV  Y +L+  L K G+  +   L  SM
Sbjct: 402 TYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSM 461

Query: 341 EENGCALDVDTFNTLMISFLQK 362
              G    V  +  ++  + +K
Sbjct: 462 IRKGIKPSVTIYGIMLHGYGKK 483



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 169/377 (44%), Gaps = 38/377 (10%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   I +  +P +++T+  +I G C   ++  A  + ++M   G +PN  T + LI G  
Sbjct: 353 FQQMIDKGVKP-DNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYL 411

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
            TG     ++  +EM           +P+VF YG L+D LCK+   ++ + LF  M  KG
Sbjct: 412 STGQWEEVVQRIKEMS------AHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKG 465

Query: 131 INANTLLC--------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           I  +  +         KK  L E + LL LM+  G++P    +  ++  Y     ++  +
Sbjct: 466 IKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVM 525

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG--------------- 227
            +F  M ++G  P+V +Y  LI+  CK   V++A+    +MI  G               
Sbjct: 526 HIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGL 585

Query: 228 --------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                    +++F EM    + P+    N  +  LCK G V+E   L  ++     +  V
Sbjct: 586 CTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDV 645

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             +N+LI G C     + A +L + +    L  ++V+YN L+H   K G+I     L   
Sbjct: 646 ISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFRE 705

Query: 340 MEENGCALDVDTFNTLM 356
           M   G    V+T+NT++
Sbjct: 706 MLRKGVTPGVETYNTIL 722



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 65/259 (25%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF-------------------------- 193
           P   TY+ ++  +C +G++ +  A F  + + G+                          
Sbjct: 82  PDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHV 141

Query: 194 ----MPD------VFSYSVLINGYCKNFNVEEAMN-----------------VSREMILN 226
               MP+      V SY+ L+ G C     EEA                   VS  +++N
Sbjct: 142 LLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVIN 201

Query: 227 GFKKIFNEMKL---------CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           GF   FNE ++           V P+  T N  IDGLCK   V    ++F  +     + 
Sbjct: 202 GF---FNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKP 258

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               +N++I G CK    ++A  +F K+  K +    V YN +I  L K   + +   + 
Sbjct: 259 NNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVF 318

Query: 338 LSMEENGCALDVDTFNTLM 356
             M + G   D  T+NT++
Sbjct: 319 QQMIDRGVKPDHVTYNTII 337


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 187/381 (49%), Gaps = 40/381 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R   +P +   FN LI  +   G + +A     KM   G  PN+ T  T++  L R G
Sbjct: 337 MVRNGTQP-DHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVG 395

Query: 74  NMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
            ++  +     +++ G+        PN   + +LI GLC     D+ ++L +EM  +GI 
Sbjct: 396 KVDDAMSQFDRLISEGL-------TPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGIC 448

Query: 133 ANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            NT+        LCK+  +  A  + +LM++  +   + TYT L++GYCL GKV+ A  L
Sbjct: 449 PNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKL 508

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF-- 228
            + M   G  P+  +Y+ +INGYCKN  +E+A ++ R+M              IL+G   
Sbjct: 509 LEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQ 568

Query: 229 -------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
                  K+++  M  C +     T NI + GLC+N    + + +F  L + +  L    
Sbjct: 569 TRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRT 628

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           FN +I    K G  + A +LF  L  + LV +VV Y +++ +L ++G +++ + L LS+E
Sbjct: 629 FNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLE 688

Query: 342 ENGCALDVDTFNTLMISFLQK 362
           +NGC  D    N L+    QK
Sbjct: 689 KNGCTADSRMLNALVGKLPQK 709



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 152/374 (40%), Gaps = 54/374 (14%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQL-VKKMATFGCRPNVTTCDTL 65
           A  A G  IR  +     +TF+ L+KG C +    DA  + +++M   GC PN  + + L
Sbjct: 115 AFAALGRVIRTGWTA-QAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNIL 173

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           + GL         L L   M+    D  G   P+V  Y ++I+GL ++  +D+   LF E
Sbjct: 174 LKGLCDENRSQQALHLLHTMM--ADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDE 231

Query: 126 MKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           M D+G                           ++P   TY  LL+GYC  GK   AI +F
Sbjct: 232 MLDQG---------------------------MSPNCITYNCLLHGYCSSGKPKEAIGIF 264

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---------------- 229
             M R G  PDV +Y+ L+   CKN    EA  V   M+  G K                
Sbjct: 265 RKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATE 324

Query: 230 -------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                  ++ + M      P+ +  NI I    K+G V E M  F  +        +  +
Sbjct: 325 GYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTY 384

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
            +++   C+ G  + A   F++L  + L  + V +  LIH L    +  K   L + M  
Sbjct: 385 GTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIG 444

Query: 343 NGCALDVDTFNTLM 356
            G   +   FNTL+
Sbjct: 445 RGICPNTIFFNTLL 458



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 15/198 (7%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           TY+ ++      G +++A A    + R G+     ++S L+ G C +    +AM+++   
Sbjct: 98  TYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIA--- 154

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN----CELFV 279
                      M      P  F+ NI + GLC      + + L  T+   +    C   V
Sbjct: 155 --------LRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDV 206

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + ++I G  + G  + A  LF+++  + +  + + YN L+H     G+ K+   +   
Sbjct: 207 VSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRK 266

Query: 340 MEENGCALDVDTFNTLMI 357
           M  +G   DV T+NTLM+
Sbjct: 267 MCRDGVEPDVVTYNTLMV 284



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 14/202 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VT+N++I G+C  G I DA  L ++MA+ G  P +    T++ GL +T  +    +L+
Sbjct: 520 NEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELY 579

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF-------MEMKDKGINAN- 134
             M+       GI  P +  Y  ++ GLC++   D    +F         ++++  N   
Sbjct: 580 LWMIK-----CGIKLP-IGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMI 633

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K  +  EA  L   ++ RGL P + TY  ++      G +     LF S+ + G  
Sbjct: 634 DALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCT 693

Query: 195 PDVFSYSVLINGYCKNFNVEEA 216
            D    + L+    +   V +A
Sbjct: 694 ADSRMLNALVGKLPQKGEVRKA 715


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 169/340 (49%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N LI G+C  G + DA   ++K    G  P+  T +T +  L + G+++  LK+   
Sbjct: 266 VTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDL 325

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M+    D      P+VF Y ++I+ L K+  +D+ K +  +M D+G        NTL   
Sbjct: 326 MLQEGHD------PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVA 379

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC + +L EA  L   +  +GL+P ++T+  L+N  C VG  ++ I LF+ M   G  PD
Sbjct: 380 LCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPD 439

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y++LI+  C    +  A+++ +EM  NG  +             T T N  ID LCK
Sbjct: 440 EVTYNILIDHLCSMGKLVNALDLLKEMESNGCPR------------STVTYNTIIDALCK 487

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E  E+F  ++          FN+LI G CK    + A+EL  ++  + L    + 
Sbjct: 488 QMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNIT 547

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN ++    K+G +KK   +L +M  NG  +DV T+ TL+
Sbjct: 548 YNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLI 587



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 171/369 (46%), Gaps = 37/369 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N+LIK  C    +R A  ++++M++    P+ TT  TL+ G    G++   L++  +
Sbjct: 196 VTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTK 255

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKD----KGINANTL--- 136
           M+           P       LI+G CK  R+ D    +  E+ D      +  NT    
Sbjct: 256 MMETG------CSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHC 309

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+   +  A ++++LM+Q G +P +FTY  ++N     G+++ A  + + M  +G +PD
Sbjct: 310 LCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPD 369

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
             +++ LI   C    +EEA++++RE+ + G                         ++F 
Sbjct: 370 TTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFE 429

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EMK     P+  T NI ID LC  G ++  ++L   +E + C      +N++I   CK  
Sbjct: 430 EMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQM 489

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A E+F+++    +    V +N LI  L K  +I     L+  M + G      T+N
Sbjct: 490 RIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYN 549

Query: 354 TLMISFLQK 362
           +++  + ++
Sbjct: 550 SILTHYCKQ 558



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 151/360 (41%), Gaps = 38/360 (10%)

Query: 29  SLIKGFCMEGNIRDASQLVK-KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           S ++ +       DA  LV+ ++ TFG + +    + L+  L     M    KL + + N
Sbjct: 129 SFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRM----KLLESVYN 184

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL---CK 139
            M D G   +P+V    +LI  LC+   V     +  EM    +  +     TL+    +
Sbjct: 185 EMTDRG--IQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIE 242

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           +  +  A R+   MM+ G +P   T   L+NGYC +G+V  A+         GF PD  +
Sbjct: 243 EGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVT 302

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMK 236
           Y+  ++  C+N +V  A+ V   M+  G                        K I N+M 
Sbjct: 303 YNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 362

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
               +P+T T N  I  LC    + E ++L   L +      V  FN LI   CK G   
Sbjct: 363 DRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPH 422

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +   LF ++       D V YNILI  L   G++     LL  ME NGC     T+NT++
Sbjct: 423 LGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTII 482



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 157/347 (45%), Gaps = 27/347 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  TFN+LI   C +  + +A  L +++   G  P+V T + LI  L + G+ +L ++L 
Sbjct: 369 DTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLF 428

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL- 136
           +EM +          P+   Y  LID LC    +    DL  EM+  G     +  NT+ 
Sbjct: 429 EEMKSSG------CAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTII 482

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+ ++ EA  + + M   G++    T+  L++G C   +++ A  L + M ++G  
Sbjct: 483 DALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQ 542

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P   +Y+ ++  YCK  ++++A ++   M  NGF+         +VV    T    I+GL
Sbjct: 543 PSNITYNSILTHYCKQGDLKKAADILETMTANGFE--------IDVV----TYGTLINGL 590

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G     ++L   + I       + +N +I+   +      A  LF +++      D 
Sbjct: 591 CKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDA 650

Query: 315 VAYNILIHALGKEGQIKKENY-LLLSMEENGCALDVDTFNTLMISFL 360
           + Y I+   L + G   KE +  L+ M   G   +  +F  L    L
Sbjct: 651 LTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLL 697



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 17/227 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+N++I   C +  I +A ++  +M   G   +  T +TLI GL +   ++   +
Sbjct: 472 PRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATE 531

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           L ++MV  G+       +P+   Y S++   CK   + +  D+   M   G   + +   
Sbjct: 532 LIEQMVKEGL-------QPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYG 584

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +   A +LL  M  +G+ P    Y P++        +  A++LF  M   
Sbjct: 585 TLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEV 644

Query: 192 GFMPDVFSYSVLINGYCKNFN-VEEAMNVSREMILNGFKKIFNEMKL 237
           G  PD  +Y ++  G C+    ++EA +   EM+  GF   F+  ++
Sbjct: 645 GEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRM 691



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 105/252 (41%), Gaps = 39/252 (15%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
             ++   +P N +T+NS++  +C +G+++ A+ +++ M   G   +V T  TLI GL + 
Sbjct: 535 QMVKEGLQPSN-ITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKA 593

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
           G   + LKL    + GM    GI +P    Y  +I                         
Sbjct: 594 GRTQVALKL----LRGM-RIKGI-RPTPKAYNPVIQS----------------------- 624

Query: 133 ANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL-VGKVNVAIALFDSMARK 191
               L ++  L +A  L   M + G  P   TY  +  G C   G +  A      M  K
Sbjct: 625 ----LFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNK 680

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           GFMP+  S+ +L  G   N  +++ +  + E+I+   K  F E  + + +        + 
Sbjct: 681 GFMPEFSSFRMLAEGLL-NLGMDDYLISAIELIIEKAK--FRESDV-SAIRGYLKIRKYY 736

Query: 252 DGLCKNGHVLEV 263
           D L   G +LE+
Sbjct: 737 DALATFGRLLEI 748



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 43/82 (52%)

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
           ++N L+    +    ++   ++N+++ + +  DVV  N LI AL +  Q++    +L  M
Sbjct: 162 VYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEM 221

Query: 341 EENGCALDVDTFNTLMISFLQK 362
             +  A D  TF TLM  F+++
Sbjct: 222 SSHAVAPDETTFTTLMQGFIEE 243


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 183/391 (46%), Gaps = 50/391 (12%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
            A+    S + +  +P   VT+NS++KG C  G    A ++ K+M  FG  P+V +   L
Sbjct: 148 AAMALVDSMVSKGLKP-GIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTIL 206

Query: 66  ITGLRRTGNMNLTLKLHQEMVN--------------------GMGDFGGIYKPNVFCYGS 105
           I G  R G +   LK+++EM +                    G  D    Y   + C+G 
Sbjct: 207 IGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGL 266

Query: 106 LIDGL---------CKDRLVDQTKDLFMEMKDKG-----INANTL---LCKKTKLVEANR 148
           + DG+         C+  L+     +  EM   G     +  NTL   LCK+ +L++A  
Sbjct: 267 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEG 326

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           LL  M +RG+ P + T+T L++GYC+ GK++ A+ LFD+M  +   PD+ +Y+ LI+G C
Sbjct: 327 LLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMC 386

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           +  ++++A +            ++++M    + P   T +I ID  C+ G V +      
Sbjct: 387 RQGDLDKAND------------LWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLD 434

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +        +  +NS+I+G C+ G      +   K+    +  D++ YN LIH   KE 
Sbjct: 435 EMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKED 494

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ++     LL  ME+     DV T+N L+  F
Sbjct: 495 KMHDAFKLLNMMEKEKVQPDVVTYNMLINGF 525



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 178/391 (45%), Gaps = 62/391 (15%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           +RC  P + VT N ++      G+   A  LV  M + G +P + T ++++ GL R+G  
Sbjct: 123 KRCVFP-DVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMW 181

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN- 134
           +   ++ +EM     DFG    P+V  +  LI G C+   +++   ++ EM+ +GI  + 
Sbjct: 182 DKAWEVFKEM----DDFG--VAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDL 235

Query: 135 -------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                   L  ++ K+  A   L  M   GL P    YT ++ G+C  G ++ A+ + D 
Sbjct: 236 VSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDE 295

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M   G +PDV +Y+ L+NG CK   + +A            + + NEM+   V P+  T 
Sbjct: 296 MVGCGCLPDVVTYNTLLNGLCKERRLLDA------------EGLLNEMRERGVPPDLCTF 343

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              I G C  G + + ++LF T+        +  +N+LI G C+ G  + A++L++ +  
Sbjct: 344 TTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHS 403

Query: 308 KNLVADVVAYNILIHALGKEGQIK-----------------------------------K 332
           + +  + V Y+ILI +  ++GQ++                                   K
Sbjct: 404 REIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSK 463

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               L  M  N  + D+ T+NTL+  +++++
Sbjct: 464 GQKFLQKMMVNKVSPDLITYNTLIHGYIKED 494



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 164/349 (46%), Gaps = 26/349 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N  T N ++  +C          ++ +M      P+V T + ++    R G+    + L
Sbjct: 93  VNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMAL 152

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLL 137
              MV+      G+ KP +  Y S++ GLC+  + D+  ++F EM D G+  +    T+L
Sbjct: 153 VDSMVSK-----GL-KPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTIL 206

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+  ++ EA ++ + M  RG+ P + +++ L+  +   GK++ A+A    M   G 
Sbjct: 207 IGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGL 266

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PD   Y+++I G+C+   + +A+ V  EM+             C  +P+  T N  ++G
Sbjct: 267 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVG------------CGCLPDVVTYNTLLNG 314

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK   +L+   L   +        +  F +LI G C  G  + A +LF+ +  + L  D
Sbjct: 315 LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 374

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +V YN LI  + ++G + K N L   M       +  T++ L+ S  +K
Sbjct: 375 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 423



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 141/305 (46%), Gaps = 30/305 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+ G C E  + DA  L+ +M   G  P++ T  TLI G    G ++  L+L   
Sbjct: 306 VTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDT 365

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M+N         +P++  Y +LIDG+C+   +D+  DL+ +M  + I  N +        
Sbjct: 366 MLNQR------LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 419

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+K ++ +A   L+ M+ +G+ P I TY  ++ GYC  G V+        M      PD
Sbjct: 420 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 479

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI+GY K   + +A             K+ N M+   V P+  T N+ I+G   
Sbjct: 480 LITYNTLIHGYIKEDKMHDAF------------KLLNMMEKEKVQPDVVTYNMLINGFSV 527

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG----IFEIASELFNKLSCKNLVA 312
           +G+V E   +F  +     E     + S+I G    G     F++  E+  +   K   A
Sbjct: 528 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRRAA 587

Query: 313 DVVAY 317
             V +
Sbjct: 588 GTVQF 592



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 15/236 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  AL  F + + +  RP + VT+N+LI G C +G++  A+ L   M +    PN  T 
Sbjct: 355 KLDKALQLFDTMLNQRLRP-DIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTY 413

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI      G +        EM+N      GI  PN+  Y S+I G C+   V + +  
Sbjct: 414 SILIDSHCEKGQVEDAFGFLDEMINK-----GIL-PNIMTYNSIIKGYCRSGNVSKGQKF 467

Query: 123 FMEM-----KDKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             +M         I  NTL+    K+ K+ +A +LL +M +  + P + TY  L+NG+ +
Sbjct: 468 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 527

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
            G V  A  +F+ M  KG  PD ++Y  +ING+    N +EA  +  EM+  G +K
Sbjct: 528 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEK 583



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           VFS +  +N Y  N  V    N  + +  +    + +EM+   V P+  T N+ +D   +
Sbjct: 86  VFSSNSEVNTYTLNIMVH---NYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFR 142

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G     M L  ++     +  +  +NS+++G C+ G+++ A E+F ++    +  DV +
Sbjct: 143 AGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRS 202

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + ILI    + G+I++   +   M   G   D+ +F+ L+  F ++
Sbjct: 203 FTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARR 248


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 171/340 (50%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N LI G+C  G + DA   +++    G  P+  T +T + GL + G++   LK+   
Sbjct: 256 VTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDV 315

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           MV    D      P+VF Y  +++ LCK+  +++ K +  +M ++G        NTL   
Sbjct: 316 MVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVA 369

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +L EA  L   +  +GL+P ++T+  L+N  C VG   +A+ LF+ M   G  PD
Sbjct: 370 LCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPD 429

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+  C    + +A+++ +EM   G  +             T T N  IDGLCK
Sbjct: 430 EVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPR------------STVTYNTIIDGLCK 477

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E  E+F  +++         FN+LI G CK    + A++L +++  + L  + + 
Sbjct: 478 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNIT 537

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN ++    K+G IKK   +L +M  NG  +DV T+ TL+
Sbjct: 538 YNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLI 577



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 28/349 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK-L 81
           ++ TF +L++GF  EG+I+ A ++  +M   GC P   T + LI G  + G +   L  +
Sbjct: 219 DETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYI 278

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            QE+ NG       ++P+   Y + ++GLC++  V     +   M  +G + +       
Sbjct: 279 QQEIANG-------FEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIV 331

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  +L EA  +L  M++RG  P I T+  L+   C   ++  A+ L   +  KG 
Sbjct: 332 VNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGL 391

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PDV+++++LIN  CK  + + A+            ++F EMK     P+  T N  ID 
Sbjct: 392 SPDVYTFNILINALCKVGDPQLAL------------RLFEEMKSSGCTPDEVTYNTLIDN 439

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LC  G + + ++L   +E + C      +N++I G CK    E A E+F+++  + +  +
Sbjct: 440 LCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 499

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            + +N LI  L K+ +I   N L+  M   G   +  T+N+++  + ++
Sbjct: 500 AITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQ 548



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 37/264 (14%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI   C  G+ + A +L ++M + GC P+  T +TLI  L   G +   L L +EM
Sbjct: 397 TFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEM 456

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                +  G  +  V  Y ++IDGLCK   +++ +++F +M  +GI+ N +        L
Sbjct: 457 -----ESAGCPRSTV-TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 510

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++ +AN+L+  M+  GL P   TY  +L  YC  G +  A  +  +M   GF  DV
Sbjct: 511 CKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDV 570

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNE 234
            +Y  LING CK    + A+ + R M + G +                        +F E
Sbjct: 571 VTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFRE 630

Query: 235 MKLCNVVPETFTCNIFIDGLCKNG 258
           M      P+ FT  I   GLC+ G
Sbjct: 631 MTEVGEPPDAFTYKIVFRGLCRGG 654



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 155/345 (44%), Gaps = 27/345 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            TFN+LI   C    + +A  L +++   G  P+V T + LI  L + G+  L L+L +E
Sbjct: 361 TTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEE 420

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M +          P+   Y +LID LC    + +  DL  EM+  G     +  NT+   
Sbjct: 421 MKSSG------CTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDG 474

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCKK ++ EA  + + M  +G++    T+  L++G C   +++ A  L   M  +G  P+
Sbjct: 475 LCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPN 534

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ ++  YCK  ++++A ++ + M  NGF+             +  T    I+GLCK
Sbjct: 535 NITYNSILTHYCKQGDIKKAADILQTMTANGFEV------------DVVTYGTLINGLCK 582

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G     ++L   + I       + +N +I+   +      A  LF +++      D   
Sbjct: 583 AGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFT 642

Query: 317 YNILIHALGKEGQIKKENY-LLLSMEENGCALDVDTFNTLMISFL 360
           Y I+   L + G   +E +  LL M + G   +  +F  L    L
Sbjct: 643 YKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLL 687



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 139/291 (47%), Gaps = 31/291 (10%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL---LCKKTKLVEANR 148
           + +   Y  L++ L +   +   + ++ EM ++GI       NTL   LC+  ++  A  
Sbjct: 147 QADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVL 206

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +LE M   G+ P   T+T L+ G+   G +  A+ +   M   G  P   + +VLINGYC
Sbjct: 207 MLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYC 266

Query: 209 KNFNVEEAMNVSREMILNGFK-----------------KIFNEMKLCNVV------PETF 245
           K   VE+A+   ++ I NGF+                  + + +K+ +V+      P+ F
Sbjct: 267 KLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVF 326

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T NI ++ LCKNG + E   +   +    C   +  FN+LI   C     E A +L  ++
Sbjct: 327 TYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQV 386

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + K L  DV  +NILI+AL K G  +    L   M+ +GC  D  T+NTL+
Sbjct: 387 TLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLI 437



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 17/194 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +TFN+LI G C +  I DA+QL+ +M + G +PN  T ++++T   + G++     + 
Sbjct: 499 NAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 558

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
           Q M  NG       ++ +V  YG+LI+GLCK         L   M+ KG+ A        
Sbjct: 559 QTMTANG-------FEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPV 611

Query: 136 --LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL-VGKVNVAIALFDSMARKG 192
              L ++    +A  L   M + G  P  FTY  +  G C   G +  A      M  KG
Sbjct: 612 IQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKG 671

Query: 193 FMPDVFSYSVLING 206
           F+P+  S+ +L  G
Sbjct: 672 FIPEFSSFRMLAEG 685



 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%)

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
           ++N L+    +    ++   +++++  + +  DVV +N L+ AL +  Q++    +L  M
Sbjct: 152 VYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEM 211

Query: 341 EENGCALDVDTFNTLMISFLQK 362
             +G A D  TF TLM  F+++
Sbjct: 212 SSSGVAPDETTFTTLMQGFVEE 233


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 166/334 (49%), Gaps = 26/334 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N ++K  C +GN+ +A+  + KM   G  P+  T +TLI    + G M    ++ 
Sbjct: 387 NAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMM 446

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
            EM +      G+ K + +   +++  LC ++ +D+  +L      +G     ++   L+
Sbjct: 447 DEMTSK-----GL-KIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILI 500

Query: 138 CKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K  + +R L L   M +R + P   TY  ++ G C   KV+ AI   + M   G +
Sbjct: 501 LGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLV 560

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +Y+++I+G+C   NVE+A     EMI N FK            P+ +TCNI + GL
Sbjct: 561 PDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFK------------PDVYTCNILLRGL 608

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + + ++LF TL     ++ V  +N++I   CK G FE A +L  ++  K L  D 
Sbjct: 609 CREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQ 668

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             Y ++I AL   G+IK+     L M E+G   D
Sbjct: 669 YTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHD 702



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 175/368 (47%), Gaps = 30/368 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKG---FCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           A   F    R  YRP N +T N+L+     +    +I  A Q++K     G  PN  + +
Sbjct: 159 ATQIFNKMKRLNYRP-NLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFN 217

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            LI G      +   L    + VN M +FG +  P+   Y +++D L K RL+ + +DL 
Sbjct: 218 ILIYGYCLESKVKDAL----DWVNKMSEFGCV--PDTVSYNTILDALLKRRLLQEARDLL 271

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
           ++MK KG++ N           C+   L EA +++E+M +  L P ++TY  L+NG+C  
Sbjct: 272 LDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCND 331

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           GK++ A  + D M +   +PDV +Y+ LI+G  +  +  E  ++  EM   G K      
Sbjct: 332 GKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVK------ 385

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
             CN V    T NI +  +CK G++ E       +E +        +N+LI   CK G  
Sbjct: 386 --CNAV----TYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKM 439

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
             A  + ++++ K L  D    N ++H L  E ++ +   LL S  + G  LD  ++  L
Sbjct: 440 GKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGIL 499

Query: 356 MISFLQKE 363
           ++ + + E
Sbjct: 500 ILGYFKDE 507



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 178/405 (43%), Gaps = 76/405 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+ G+C  G +++A+++++ M      P V T + L+ G    G ++   ++ 
Sbjct: 282 NKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIR 341

Query: 83  QEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            EM  +N +        P+V  Y +LIDG  + R   +   L  EM  KG+  N +    
Sbjct: 342 DEMEKMNVL--------PDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNI 393

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               +CKK  + EA   L+ M + GL+P   TY  L+  YC  GK+  A  + D M  KG
Sbjct: 394 ILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKG 453

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMN--------------VSREMILNGFKK-------- 230
              D ++ + +++  C    ++EA N              VS  +++ G+ K        
Sbjct: 454 LKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRAL 513

Query: 231 -IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME---------LFPTLEISNC----- 275
            +++EMK   ++P T T N  I GLC++  V + ++         L P     N      
Sbjct: 514 NLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGF 573

Query: 276 --------------ELFVEIF-------NSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
                         E+   +F       N L+RG C+ G+ E A +LFN L  K    DV
Sbjct: 574 CLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDV 633

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V YN +I +L KEG+ +    LL  ME      D  T+  ++ + 
Sbjct: 634 VTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAAL 678


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 180/379 (47%), Gaps = 40/379 (10%)

Query: 9   MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
            AF   I  C  P +   FN L+   C E  I +A  L  ++   G RP V + +TLI G
Sbjct: 210 WAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLING 269

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
             ++GN++   +L + M+           P+VF Y  LI+GLCK+  +D    LF+EM D
Sbjct: 270 YCKSGNLDQGFRLKRFMMENR------VFPDVFTYSVLINGLCKEGQLDDANKLFLEMCD 323

Query: 129 KGINAN-----TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +G+  N     TL+   C   +      + + M+++G+ P + TY  L+NG C VG +  
Sbjct: 324 RGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLRE 383

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LN 226
           A  L   M ++G  PD F+Y++LI+G CK  ++E A+ + +EM+              ++
Sbjct: 384 AKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALIS 443

Query: 227 GF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           GF         ++   EM    + P+  T  + I G CK G V    +L   ++      
Sbjct: 444 GFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVP 503

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  +N L+ G CK G  + A+ L + +    +V D + YNIL+    K G   +E++  
Sbjct: 504 GVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGN--REDFDK 561

Query: 338 LSMEENGCALDVDTFNTLM 356
           L   E G   D  ++ +L+
Sbjct: 562 LQ-SEKGLVQDYGSYTSLI 579



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 133/292 (45%), Gaps = 35/292 (11%)

Query: 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQ 155
           G L D L K  L       + E+ D G   +          LCK+ K+ EA  L   + +
Sbjct: 194 GYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGK 253

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           RGL P + ++  L+NGYC  G ++    L   M      PDVF+YSVLING CK   +++
Sbjct: 254 RGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDD 313

Query: 216 AMNVSREM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFID 252
           A  +  EM              ++NG           +I+ +M    V P+  T N  I+
Sbjct: 314 ANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLIN 373

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNS--LIRGCCKFGIFEIASELFNKLSCKNL 310
           GLCK G + E  +L   +E++   L  + F    LI GCCK G  E A E+  ++  + +
Sbjct: 374 GLCKVGDLREAKKL--VIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGI 431

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             D VA+  LI    +EGQ+ +    L  M E G   D  T+  ++  F +K
Sbjct: 432 ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKK 483


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 154/344 (44%), Gaps = 44/344 (12%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           RR +  LN  TFN  I G C  G +  A   ++ M  +G  PNV T +TL+ G  + G+ 
Sbjct: 194 RRIHTNLN--TFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSA 251

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
               K    M   + +      PN   + +LIDG CKD  V   K  F EM+        
Sbjct: 252 GKMYKAEAFMKEMLAN---KICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQ-------- 300

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
                              ++GL P I TY  L+NG C  GK+  AI L+D M   G  P
Sbjct: 301 -------------------KQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKP 341

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           ++ +Y+ LING+CK   ++EA             K+F+++    +VP   T N  ID  C
Sbjct: 342 NIVTYNALINGFCKKKMMKEAT------------KVFDDVSKQELVPNVITFNTMIDAYC 389

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G + E   L  ++        V  +N LI G C+    + A EL N++  K L  DVV
Sbjct: 390 KEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVV 449

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            YNILI  L K  + +    LL  M   G   +  T+NTLM  +
Sbjct: 450 TYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGY 493



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 124/263 (47%), Gaps = 40/263 (15%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V  A  AF    ++  +P N VT+NSLI G C  G + +A  L  KM   G +PN+ T +
Sbjct: 289 VAAAKKAFEEMQKQGLKP-NIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYN 347

Query: 64  TLITGLRRTGNMNLTLKL-----HQEMV---------------NGMGDFG---------- 93
            LI G  +   M    K+      QE+V                GM + G          
Sbjct: 348 ALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDE 407

Query: 94  GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVE 145
           GI  PNV  Y  LI GLC+ + +   K+L  EM++KG+  + +        LCK  K   
Sbjct: 408 GIL-PNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRN 466

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A +LL  M   GL P   TY  L++GYC+ GK+  A+ +   M ++   P+V +Y+VLI 
Sbjct: 467 AEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIK 526

Query: 206 GYCKNFNVEEAMNVSREMILNGF 228
           GYCK   +E A  +  EM+  G 
Sbjct: 527 GYCKINKLEAANGLLNEMLEKGL 549



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 156/323 (48%), Gaps = 31/323 (9%)

Query: 54  GCRPNVTT--CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC 111
           G RP  T    D L+    +    NL L    E      D+G  +K ++     L+  L 
Sbjct: 123 GGRPGATALIIDMLVLAYVK----NLELHCAYEAFTRAKDYG--FKLSLTSCNPLLSALV 176

Query: 112 KDRLVDQTKDLFMEMKDKGI--NANTL------LCKKTKLVEANRLLELMMQRGLNPVIF 163
           K+  +   + ++ EM  + I  N NT       LC+  KL +A   +E M   G++P + 
Sbjct: 177 KENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVV 236

Query: 164 TYTPLLNGYC---LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
           TY  L++GYC     GK+  A A    M      P+  +++ LI+G+CK+ NV  A    
Sbjct: 237 TYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAA---- 292

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                   KK F EM+   + P   T N  I+GLC NG + E ++L+  +     +  + 
Sbjct: 293 --------KKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIV 344

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            +N+LI G CK  + + A+++F+ +S + LV +V+ +N +I A  KEG +++   L  SM
Sbjct: 345 TYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSM 404

Query: 341 EENGCALDVDTFNTLMISFLQKE 363
            + G   +V T+N L+    +K+
Sbjct: 405 LDEGILPNVSTYNCLIAGLCRKQ 427


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 169/340 (49%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N LI G+C  G + DA   +++    G  P+  T +T + GL + G+++  LK+   
Sbjct: 268 VTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDL 327

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M+    D      P+VF Y ++I+ L K+  +D+ K +  +M D+G        NTL   
Sbjct: 328 MLQEGHD------PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVA 381

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L  + +L EA  L   +  +GL+P ++T+  L+N  C VG  ++ I LF+ M   G  PD
Sbjct: 382 LSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPD 441

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y++LI+  C    +  A+++  EM  NG  +             T T N  ID LCK
Sbjct: 442 EVTYNILIDHLCSMGKLGNALDLLNEMESNGCPR------------STVTYNTIIDALCK 489

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E  E+F  ++          FN+LI G CK    + A+EL  ++  + L  + + 
Sbjct: 490 KMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNIT 549

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN ++    K+G IKK   +L +M  NG  +DV T+ TL+
Sbjct: 550 YNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLI 589



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 170/366 (46%), Gaps = 37/366 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N+LIK  C    +R A  ++++M++ G  P+ TT  TL+ G    G++   L++  +
Sbjct: 198 VTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAK 257

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKD----KGINANTL--- 136
           M+           P       LI+G CK  R+ D    +  E+ D      +  NT    
Sbjct: 258 MMEAG------CSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHG 311

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+   +  A ++++LM+Q G +P +FTY  ++N     G+++ A  + + M  +G +PD
Sbjct: 312 LCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPD 371

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
             +++ LI        +EEA++++RE+ + G                         ++F 
Sbjct: 372 TTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFE 431

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EMK     P+  T NI ID LC  G +   ++L   +E + C      +N++I   CK  
Sbjct: 432 EMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKM 491

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A E+F+++  + +    V +N LI  L K  +I     L+  M + G   +  T+N
Sbjct: 492 RIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYN 551

Query: 354 TLMISF 359
           +++  +
Sbjct: 552 SILTHY 557



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 156/348 (44%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V FN L+        ++    +  +M   G +P+V T +TLI  L R   +   + + 
Sbjct: 161 DTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLML 220

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD---QTKDLFMEM--KDKGINANTLL 137
           +EM +      G+  P+   + +L+ G  ++  ++   + K   ME      G+  N L+
Sbjct: 221 EEMSSH-----GV-APDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLI 274

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  ++ +A   ++  +  G  P   TY   ++G C  G V+ A+ + D M ++G  
Sbjct: 275 NGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHD 334

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDVF+Y+ +IN   KN  ++EA            K I N+M     +P+T T N  I  L
Sbjct: 335 PDVFTYNTVINCLSKNGELDEA------------KGIVNQMVDRGCLPDTTTFNTLIVAL 382

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
                + E ++L   L +      V  FN LI   CK G   +   LF ++       D 
Sbjct: 383 SSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDE 442

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V YNILI  L   G++     LL  ME NGC     T+NT++ +  +K
Sbjct: 443 VTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKK 490



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 119/264 (45%), Gaps = 37/264 (14%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI   C  G+     +L ++M + GC P+  T + LI  L   G +   L L  EM
Sbjct: 409 TFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEM 468

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL---L 137
                +  G  +  V  Y ++ID LCK   +++ +++F +M  +GI+      NTL   L
Sbjct: 469 -----ESNGCPRSTV-TYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGL 522

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++ +A  L+E M++ GL P   TY  +L  YC  G +  A  + ++M   GF  DV
Sbjct: 523 CKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDV 582

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNE 234
            +Y  LING CK    + A+ + R M + G +                        +F E
Sbjct: 583 VTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFRE 642

Query: 235 MKLCNVVPETFTCNIFIDGLCKNG 258
           M      P+  T  I    LC+ G
Sbjct: 643 MTEVGEPPDALTYKIVFRSLCRGG 666



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 125/298 (41%), Gaps = 37/298 (12%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+N++I   C +  I +A ++  +M   G   +  T +TLI GL +   ++   +
Sbjct: 474 PRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATE 533

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           L ++MV  G+       +PN   Y S++   CK   + +  D+   M   G   + +   
Sbjct: 534 LIEQMVKEGL-------QPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYG 586

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +   A +LL  M  +G+ P    Y P++        +  A+ LF  M   
Sbjct: 587 TLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEV 646

Query: 192 GFMPDVFSYSVLINGYCKNFN-VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           G  PD  +Y ++    C+    ++EA +   EM+  GF            +PE  +  + 
Sbjct: 647 GEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGF------------MPEFSSFRML 694

Query: 251 IDGLCKNG---HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
            +GL   G   +++  +EL     I     F E   S IRG  K   +  A   F +L
Sbjct: 695 AEGLLNLGMDDYLISAIEL-----IIEKAKFRESDASAIRGYLKIRKYYDALATFGRL 747



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/346 (20%), Positives = 136/346 (39%), Gaps = 45/346 (13%)

Query: 54  GCRPN------VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107
           G RP       ++  D L+  LR   +    L++    +    DF     P+   Y  ++
Sbjct: 42  GHRPAPLRVYAISDQDRLLAALREQSDPEAALRMLNSAL-AREDFA----PSSAVYEEIV 96

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK-----TKLVEANRLLELMMQR------ 156
             L      D  + L  EM+ +G     ++ +       +L   +  ++L++ +      
Sbjct: 97  QKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTF 156

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+      +  LLN      K+ +  ++++ M  +G  PDV + + LI   C+   V  A
Sbjct: 157 GVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTA 216

Query: 217 MNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFTCNIFIDG 253
           + +  EM  +G                         ++  +M      P   T N+ I+G
Sbjct: 217 VLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLING 276

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK G V + +           E     +N+ + G C+ G    A ++ + +  +    D
Sbjct: 277 YCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPD 336

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V  YN +I+ L K G++ +   ++  M + GC  D  TFNTL+++ 
Sbjct: 337 VFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVAL 382


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 158/325 (48%), Gaps = 72/325 (22%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  ++P +  TF +LI+G C+EG I +A  L  KM   G +PNV T  TLI
Sbjct: 99  AFSVLAKILKLGHQP-DPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLI 157

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + GN +  ++L + M  G        +P+V  Y S+ID LCKDR V +  +LF +M
Sbjct: 158 NGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 211

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             +GI+ +                                             LCK+ K+
Sbjct: 212 VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKV 271

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA+ ++++M+QRG+ P + TYT L++G+CL  +++ A+ +FD M RKGF PDV SY+ L
Sbjct: 272 TEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTL 331

Query: 204 INGYCKN----FNVEE---------------AMNVSREMILNGFKK---IFNEMKLCNVV 241
           IN   K+     +++E               A+ V R+  +  F+K   + NEM    ++
Sbjct: 332 INAGKKDGGGLVSLQEVIGLVKETPDAVKGGAVEVIRKDKMKLFEKGRTLLNEMVNSKIM 391

Query: 242 PETFTCNIFIDGLCKNGHVLEVMEL 266
           P     +  +D LCK G V+E  ++
Sbjct: 392 PNVVIFSTVVDALCKEGKVMEAHDV 416



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 121/267 (45%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  +  L+  + K +       L  +M   G+  N           C   ++  A  +
Sbjct: 43  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 102

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  +++ G  P   T+T L+ G C+ GK+  A+ LFD M  +GF P+V +Y  LING CK
Sbjct: 103 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 162

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
             N   A+            ++   M+  N  P+       ID LCK+  V E   LF  
Sbjct: 163 VGNTSAAI------------RLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQ 210

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +        +  + SL+   C    ++  + L N++    ++ DVV ++ ++ AL KEG+
Sbjct: 211 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGK 270

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           + + + ++  M + G   DV T+ TLM
Sbjct: 271 VTEAHEIVDMMIQRGVEPDVVTYTTLM 297



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 12/179 (6%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A++ F+ +      P +  ++ L+    K  +    +++S +M   G            V
Sbjct: 29  ALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFG------------V 76

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P  +T NI I+  C    V     +   +     +     F +LIRG C  G    A  
Sbjct: 77  PPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALH 136

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           LF+K+  +    +VV Y  LI+ L K G       LL SME+  C  DV  + +++ S 
Sbjct: 137 LFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL 195


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 189/397 (47%), Gaps = 48/397 (12%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            S  LG +M  G      + P + VTF SLI GFC+   + +A  +V +M   G +P+V 
Sbjct: 126 ASSFLGKMMKLG------FEP-DIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVV 178

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
              T+I  L + G++N  L L  +M N    +G   +P+V  Y SL++GLC         
Sbjct: 179 MYTTIIDSLCKNGHVNYALSLFDQMEN----YG--IRPDVVMYTSLVNGLCNSGRWRDAD 232

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L   M  + I  + +          K+ K ++A  L   M++  + P IFTYT L+NG+
Sbjct: 233 SLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGF 292

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------- 223
           C+ G V+ A  +F  M  KG  PDV +Y+ LING+CK   V++AM +  EM         
Sbjct: 293 CMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNT 352

Query: 224 -----ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                ++ GF         +++F+ M    V P   T N+ +  LC NG V + + +F  
Sbjct: 353 ITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFED 412

Query: 270 L---EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
           +   E+      +  +N L+ G C  G  E A  +F  +  + +   ++ Y I+I  + K
Sbjct: 413 MQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCK 472

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            G++K    L  S+   G   +V T+ T MIS L +E
Sbjct: 473 AGKVKNAVNLFCSLPSKGVKPNVVTYTT-MISGLFRE 508



 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 172/348 (49%), Gaps = 24/348 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F        RP + V + SL+ G C  G  RDA  L++ M     +P+V T + LI
Sbjct: 196 ALSLFDQMENYGIRP-DVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALI 254

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
               + G      +L+ EM+           PN+F Y SLI+G C +  VD+ + +F  M
Sbjct: 255 DAFVKEGKFLDAEELYNEMIRMS------IAPNIFTYTSLINGFCMEGCVDEARQMFYLM 308

Query: 127 KDKG----INANTLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           + KG    + A T L    CK  K+ +A ++   M Q+GL     TYT L+ G+  VGK 
Sbjct: 309 ETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           NVA  +F  M  +G  P++ +Y+VL++  C N  V++A+ +  +M          + ++ 
Sbjct: 369 NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDM---------QKREMD 419

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            V P  +T N+ + GLC NG + + + +F  +     ++ +  +  +I+G CK G  + A
Sbjct: 420 GVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNA 479

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
             LF  L  K +  +VV Y  +I  L +EG   + + L   M+E+G +
Sbjct: 480 VNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 163/342 (47%), Gaps = 29/342 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T N L+  FC       AS  + KM   G  P++ T  +LI G      M   +     M
Sbjct: 109 TCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAM----SM 164

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           VN M + G   KP+V  Y ++ID LCK+  V+    LF +M++ GI  + +        L
Sbjct: 165 VNQMVEMG--IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGL 222

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +  +A+ LL  M +R + P + T+  L++ +   GK   A  L++ M R    P++
Sbjct: 223 CNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNI 282

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           F+Y+ LING+C    V+EA            +++F  M+     P+       I+G CK 
Sbjct: 283 FTYTSLINGFCMEGCVDEA------------RQMFYLMETKGCFPDVVAYTSLINGFCKC 330

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V + M++F  +           + +LI+G  + G   +A E+F+ +  + +  ++  Y
Sbjct: 331 KKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTY 390

Query: 318 NILIHALGKEGQIKKENYLLLSMEE---NGCALDVDTFNTLM 356
           N+L+H L   G++KK   +   M++   +G A ++ T+N L+
Sbjct: 391 NVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLL 432



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 47/250 (18%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS----------------- 187
           EA  L   M++    P I  +T LLN    + K +V I L D                  
Sbjct: 55  EALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLM 114

Query: 188 ------------------MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
                             M + GF PD+ +++ LING+C    +EEAM++  +M+  G K
Sbjct: 115 NCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIK 174

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                       P+       ID LCKNGHV   + LF  +E       V ++ SL+ G 
Sbjct: 175 ------------PDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGL 222

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C  G +  A  L   ++ + +  DV+ +N LI A  KEG+      L   M     A ++
Sbjct: 223 CNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNI 282

Query: 350 DTFNTLMISF 359
            T+ +L+  F
Sbjct: 283 FTYTSLINGF 292


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 175/352 (49%), Gaps = 26/352 (7%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           ++ L ++T+N+L+  F   G++ +A +L++ M    C P V T  TL+ GL + G ++  
Sbjct: 523 FKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEA 582

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           + L +EM     +      P+V  Y SL+    K    +++  LF EM  KG  A+    
Sbjct: 583 VSLLREMEKQGCE------PSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTY 636

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LCK   + +A  +   M + G+ P++  Y  LL+      K++ A+ +F+ +  
Sbjct: 637 SLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQE 696

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
              +PD F Y++++NG  K+  V+EA             K+ + MK  N++P+ FT    
Sbjct: 697 SSLVPDTFVYNIMVNGLVKSNRVDEAC------------KLVDSMKNQNILPDLFTYTSL 744

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           +DGL K+G + E   +F  +     E  V  + SL+    K G    A  +F  ++ K  
Sbjct: 745 LDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRC 804

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V DVV Y+ LI +LGKEG++++  Y   +    GC  +V  +++L+ SF +K
Sbjct: 805 VPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKK 856



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 169/363 (46%), Gaps = 37/363 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +L+ G    G + +A  L+++M   GC P+V T  +L+    +      +L L  E
Sbjct: 564 VTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDE 623

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLLC- 138
           MV      G +   +V  Y  +I+ LCK   VDQ  D+F  MK++G+     N  TLL  
Sbjct: 624 MVRK----GCV--ADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSS 677

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K  K+  A ++   + +  L P  F Y  ++NG     +V+ A  L DSM  +  +PD
Sbjct: 678 LVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPD 737

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFN 233
           +F+Y+ L++G  K+  +EEA N+  +M   G +                        IF 
Sbjct: 738 LFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFR 797

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            M     VP+  T +  ID L K G V E    F       C   V +++SLI    K G
Sbjct: 798 AMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKG 857

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           + + A ELF ++  +    ++V YN L+  L K G++     LL  ME+ GC  D+ T+N
Sbjct: 858 MVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYN 917

Query: 354 TLM 356
            L+
Sbjct: 918 ILI 920



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 160/377 (42%), Gaps = 57/377 (15%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF  LI      GNI +A +    M    C PNV T  TL+ GL + G +    ++  EM
Sbjct: 324 TFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEM 383

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
                       P+   Y +LIDGL K    D    LF EMKD+G+  N        ++L
Sbjct: 384 KENN------CSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVL 437

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF---- 193
            K  +  EA +L   + ++G  P +FTY  L++     G+++  +A+   M  KG     
Sbjct: 438 GKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECII 497

Query: 194 --------------------MPDV-------FSYSVLINGYCKNFNVEEAMNVSREMILN 226
                                P +        +Y+ L++ +  N +V+EA+         
Sbjct: 498 SRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAV--------- 548

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
              K+   MK    +P   T    +DGL K G + E + L   +E   CE  V  ++SL+
Sbjct: 549 ---KLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLM 605

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
               K    E +  LF+++  K  VADV  Y+++I+ L K   + +   +   M+E G  
Sbjct: 606 ASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGME 665

Query: 347 LDVDTFNTLMISFLQKE 363
             +  + TL+ S ++ E
Sbjct: 666 PLLGNYKTLLSSLVKDE 682



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 151/350 (43%), Gaps = 27/350 (7%)

Query: 7    ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
            AL  F         P +   +N ++ G      + +A +LV  M      P++ T  +L+
Sbjct: 687  ALQIFNELQESSLVP-DTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLL 745

Query: 67   TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             GL ++G +     +  +M          ++P+V  Y SL+D L K   +     +F  M
Sbjct: 746  DGLGKSGRLEEAFNMFTKMTEEG------HEPDVVAYTSLMDVLGKGGKLSHALIIFRAM 799

Query: 127  KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              K    + +        L K+ ++ EA    E  + +G  P +  Y+ L++ +   G V
Sbjct: 800  AKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMV 859

Query: 179  NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
            + A+ LF+ M R+   P++ +Y+ L++G  K               LN  +K+  EM+  
Sbjct: 860  DRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGR------------LNVAEKLLEEMEKV 907

Query: 239  NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              VP+  T NI IDG+ K G V E    F  ++       V  F SLI    K      A
Sbjct: 908  GCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEA 967

Query: 299  SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             ELF+ +  +     VV YN+LI  LG+ G++ +   +   M+  GC  D
Sbjct: 968  CELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPD 1017



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 134/303 (44%), Gaps = 26/303 (8%)

Query: 26   TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            T+ SL+ G    G + +A  +  KM   G  P+V    +L+  L + G ++  L + + M
Sbjct: 740  TYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAM 799

Query: 86   VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LL 137
                        P+V  Y SLID L K+  V++    F     KG   N           
Sbjct: 800  AKKR------CVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSF 853

Query: 138  CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
             KK  +  A  L E M +R   P I TY  LL+G    G++NVA  L + M + G +PD+
Sbjct: 854  GKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDL 913

Query: 198  FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             +Y++LI+G  K   V+EA            +  F  MK   +VP+  T    I+ L K 
Sbjct: 914  VTYNILIDGVGKMGMVDEA------------ESYFKRMKEKGIVPDVITFTSLIESLGKV 961

Query: 258  GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
              +LE  ELF ++E       V  +N LI    + G    A+ +F+++  K  + D +  
Sbjct: 962  DKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITI 1021

Query: 318  NIL 320
             I+
Sbjct: 1022 GIM 1024



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 166/402 (41%), Gaps = 58/402 (14%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T+ V GAL  F         P  ++ +N +++     G    A  +  K+  F  +P+  
Sbjct: 230 TNNVSGALEIFNQMKSFGCNPSTNM-YNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQ 288

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T    +    R+G ++   +  QEM+    D      P V  +  LID L K   +D+  
Sbjct: 289 TFRIFVHSFNRSGRLDPAAEPIQEMIKSGID------PGVHTFTVLIDALVKSGNIDEAC 342

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
             F  MK+   + N +        L K  +L EA  +   M +   +P    Y  L++G 
Sbjct: 343 KFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGL 402

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
              G+ ++A  LF  M  +G +P++ +Y+++I+   K     EA             ++F
Sbjct: 403 GKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAW------------QLF 450

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL-------------------EIS 273
           +++K    VP+ FT N  ID L K G + +V+ +   +                    I 
Sbjct: 451 HDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIE 510

Query: 274 NCELFVE------------IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
             +  VE             +N+L+      G  + A +L   +     +  VV Y  L+
Sbjct: 511 GADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLV 570

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             LGK G++ +   LL  ME+ GC   V T+++LM SF +++
Sbjct: 571 DGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRD 612



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 91/237 (38%), Gaps = 47/237 (19%)

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           Q G +  + TYT ++       + +  + +  +M ++G    +   + L+  +    NV 
Sbjct: 175 QDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVS 234

Query: 215 EAMNVSREMILNGFKKIFNEMKL--CN--------------------------------- 239
            A+            +IFN+MK   CN                                 
Sbjct: 235 GAL------------EIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFR 282

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           + P+  T  IF+    ++G +    E    +  S  +  V  F  LI    K G  + A 
Sbjct: 283 IQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEAC 342

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + FN +       +VV Y  L++ L K G++++   + + M+EN C+ D   +NTL+
Sbjct: 343 KFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLI 399


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 176/347 (50%), Gaps = 30/347 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+  LI GF   G I +A +L ++M   G   +V    ++I+   R+GN+   L L 
Sbjct: 298 NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLF 357

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EM     D G I  P+   YG+LI G+CK   ++  + L  EM+ KGI+ N ++     
Sbjct: 358 DEMT----DKGLI--PSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLI 411

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+   + EA RL  +M ++GL   +F Y  + +G C + + + A  L  SM  +G  
Sbjct: 412 DGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVS 471

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  S++ LI+ YCK  N  EA            K++F EM+    VP   T N+ IDG 
Sbjct: 472 PNTMSFTTLIDIYCKEGNFVEA------------KRVFREMEEKGNVPNIITYNVLIDGY 519

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFN--SLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            K G++ E  +L   LE  N  L  +++   SLI G C  G  ++A +LF+++  + LV 
Sbjct: 520 SKRGNMKEAHKLKDELE--NRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVP 577

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +VV Y  +I  L K+G+ ++   L   M+E G   D   +++L+ S 
Sbjct: 578 NVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 624



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 152/323 (47%), Gaps = 26/323 (8%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
           +A +  + M   G   +  +C   +  LRR G ++  L+  + MVN         +  V+
Sbjct: 177 EALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVN------LDVEVTVY 230

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--------KKTKLVEANRLLELM 153
               ++DGLCK   V+  + L  E+  KG+ AN +          K+  L     +L LM
Sbjct: 231 SLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLM 290

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
            + G+   + TYT L++G+  +GK+  A  LF+ M  KG   DV+ Y+ +I+  C++ NV
Sbjct: 291 EKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNV 350

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           + A+             +F+EM    ++P   T    I G+CK G +     L   ++  
Sbjct: 351 KRAL------------VLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGK 398

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             +L   IFN+LI G C+ G+ + A  L   +  K L +DV AYN +   L K  +  + 
Sbjct: 399 GIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEA 458

Query: 334 NYLLLSMEENGCALDVDTFNTLM 356
             LL SM E G + +  +F TL+
Sbjct: 459 KGLLFSMVERGVSPNTMSFTTLI 481



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 149/333 (44%), Gaps = 26/333 (7%)

Query: 38  GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97
           G +    +  ++M        V +   ++ GL + G++ +  KL  E+        G+ K
Sbjct: 208 GQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAK-----GV-K 261

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLLCKK----TKLVEANRL 149
            NV  Y + I+G  K   +    ++   M+ +G+  N    TLL        K+ EA RL
Sbjct: 262 ANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRL 321

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            E M ++G+   ++ YT +++  C  G V  A+ LFD M  KG +P   +Y  LI+G CK
Sbjct: 322 FEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCK 381

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              +E A  +  EM   G           ++ P  F  N  IDG C++G V E + L   
Sbjct: 382 AGQMEAAQMLVNEMQGKGI----------DLNPVIF--NTLIDGYCESGMVDEALRLQVV 429

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +E    E  V  +NS+  G CK    + A  L   +  + +  + +++  LI    KEG 
Sbjct: 430 MEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGN 489

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             +   +   MEE G   ++ T+N L+  + ++
Sbjct: 490 FVEAKRVFREMEEKGNVPNIITYNVLIDGYSKR 522



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 26/230 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V FN+LI G+C  G + +A +L   M   G   +V   +++ +GL +    +    L
Sbjct: 402 LNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGL 461

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
              MV       G+  PN   + +LID  CK+    + K +F EM++KG     I  N L
Sbjct: 462 LFSMVER-----GV-SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVL 515

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +    K+  + EA++L + +  RGL P ++T T L++G C+ GKV++A+ LFD M ++G 
Sbjct: 516 IDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGL 575

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           +P+V +Y+ +I+G  K+   EEA             K+++EMK   + P+
Sbjct: 576 VPNVVTYTAMISGLSKDGRSEEAF------------KLYDEMKETGLTPD 613



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 122/323 (37%), Gaps = 50/323 (15%)

Query: 43  ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDF-----GGIYK 97
           A ++ K + + G + ++ T  +L++ L  +  ++L L  H        DF        YK
Sbjct: 31  AGKISKTLVSSGAK-SLQTTPSLLSSLN-SQTVHLILSNHILTAESCLDFFHFIRKNYYK 88

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLE-LMMQR 156
           P++  Y +LI  L + R  D+                  L K  K  E   L     +  
Sbjct: 89  PDLRAYITLIFKLYRSRKSDK------------------LHKSQKFAEIRHLFNCAAVDD 130

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           GL   +     L++  C   K N          R  F    F   +L   Y  N    EA
Sbjct: 131 GLRVPVTVIASLVDDACNESKCN----------RAKFKEKFFD--LLFRVYADNKMFGEA 178

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           +     M   GF              +  +C +++  L + G V   +  F  +   + E
Sbjct: 179 LEAFEHMEKKGFH------------IDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVE 226

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
           + V     ++ G CK G  E+  +L ++++ K + A+VV YN  I    K   +     +
Sbjct: 227 VTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEI 286

Query: 337 LLSMEENGCALDVDTFNTLMISF 359
           L  ME+ G A +V T+  L+  F
Sbjct: 287 LTLMEKEGVACNVVTYTLLIHGF 309


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 154/342 (45%), Gaps = 48/342 (14%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ V + +LI+     G I  AS + K M + GC P+V T  T+I GL + G +   +++
Sbjct: 89  LDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRI 148

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
            + M   G+        PN   Y +LI GLCK R +D   ++  +MK          C  
Sbjct: 149 FKSMEARGLA-------PNEVVYSALIHGLCKARKMDCALEMLAQMKKA-------FC-- 192

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                              P   TY  L++G C  G V  A A FD M   G  PDV++Y
Sbjct: 193 ------------------TPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTY 234

Query: 201 SVLINGYCKNFNVEEAMN-VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           ++LI+G+CK  N + A + +++E  +NG          C +   T+T    +D L KN  
Sbjct: 235 NILISGFCKAGNTDAASHSLAQETTING----------CTIDIHTYTA--IVDWLAKNKK 282

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + E + L   +  + C   +  +N+L+ G CK G  E A +L  K+       DVV Y  
Sbjct: 283 IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 342

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           LI  LGKE +  +   L   M   G ALD   +  L+   LQ
Sbjct: 343 LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQ 384



 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 170/389 (43%), Gaps = 39/389 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++  A+  F S   R   P N+V +++LI G C    +  A +++ +M    C P+  T 
Sbjct: 141 RIGAAVRIFKSMEARGLAP-NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITY 199

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ-TKD 121
           + LI GL ++G++        EM+          KP+V+ Y  LI G CK    D  +  
Sbjct: 200 NVLIDGLCKSGDVEAARAFFDEMLEAG------CKPDVYTYNILISGFCKAGNTDAASHS 253

Query: 122 LFMEMKDKG--INANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  E    G  I+ +T       L K  K+ EA  L+E +   G  P I TY  LLNG C
Sbjct: 254 LAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLC 313

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----- 228
            +G++  AI L   +   G  PDV +Y+ LI+G  K     EA  + +EM L G      
Sbjct: 314 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTV 373

Query: 229 ------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                               ++  M     VP+  T +  IDGL K G +   + +F ++
Sbjct: 374 CYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSM 433

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           E         ++++LI G CK    + A E+  ++       D + YNILI  L K G +
Sbjct: 434 EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDV 493

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISF 359
           +        M E GC  DV T+N L+  F
Sbjct: 494 EAARAFFDEMLEAGCKPDVYTYNILISGF 522



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 161/328 (49%), Gaps = 28/328 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ +++        I +A  L++K+   GC P + T + L+ GL + G +   + L +++
Sbjct: 269 TYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 328

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           V NG         P+V  Y SLIDGL K++   +   LF EM  +G+  +T+        
Sbjct: 329 VDNGC-------TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRE 381

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L +  K+ +A+ + + M   G  P + T + +++G    G++  A+ +F SM  +G  P+
Sbjct: 382 LLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPN 441

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
              YS LI+G CK   ++ A+ +  +M     KK F         P+T T NI IDGLCK
Sbjct: 442 EVVYSALIHGLCKARKMDCALEMLAQM-----KKAF-------CTPDTITYNILIDGLCK 489

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V      F  +  + C+  V  +N LI G CK G  + A  +F+ +S     A+VV 
Sbjct: 490 SGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVT 549

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
           Y  LI  L K  Q+ K +     M+E G
Sbjct: 550 YGALISGLCKRRQLTKASLYFQHMKERG 577



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 106/241 (43%), Gaps = 23/241 (9%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           K+ EA  L+E +   G  P I TY  LLNG C +G++  AI L   +   G  PDV +Y+
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLC 238
            LI+G  K     EA  + +EM L G                          ++  M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
             VP+  T +  IDGL K G +   + +F ++E         ++++LI G CK    + A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            E+  ++       D + YN+LI  L K G ++        M E GC  DV T+N L+  
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 240

Query: 359 F 359
           F
Sbjct: 241 F 241



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 130/291 (44%), Gaps = 32/291 (10%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P +  Y +L++GLCK   +++  DL  ++ D G   + +        L K+ +  EA +L
Sbjct: 19  PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 78

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            + M  RGL      YT L+      GK+  A +++ +M   G +PDV + S +I+G  K
Sbjct: 79  FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 138

Query: 210 NFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFT 246
              +  A+ + + M   G                         ++  +MK     P+T T
Sbjct: 139 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTIT 198

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE-LFNKL 305
            N+ IDGLCK+G V      F  +  + C+  V  +N LI G CK G  + AS  L  + 
Sbjct: 199 YNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQET 258

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +      D+  Y  ++  L K  +I++   L+  +  NGC   + T+N L+
Sbjct: 259 TINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALL 309



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 6/116 (5%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +++ +   + +T+N LI G C  G++  A     +M   GC+P+V T + LI+G  + GN
Sbjct: 468 MKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGN 527

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
            +    +  +M +           NV  YG+LI GLCK R + +    F  MK++G
Sbjct: 528 TDAACGVFDDMSSSR------CSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%)

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           E + L   +  + C   +  +N+L+ G CK G  E A +L  K+       DVV Y  LI
Sbjct: 4   EAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 63

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             LGKE +  +   L   M   G ALD   +  L+   LQ
Sbjct: 64  DGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQ 103


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 183/369 (49%), Gaps = 37/369 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T N ++   C +G   D    + +M   G   ++ T +TLI    R G     L+ 
Sbjct: 116 LNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREG----LLEE 171

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL 136
             E++N M D G   KP++F Y ++I+GLCK     + K + +EM + G++      NTL
Sbjct: 172 AFEIMNSMADKG--LKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTL 229

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   C++    EA  +   M+++G+ P + +++ L+  +     ++ A+  F  M + G 
Sbjct: 230 LVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGL 289

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KK 230
           +PD   Y+VL++GYC+N N+ EA+ +  EM              ILNG           K
Sbjct: 290 VPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADK 349

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F+EM     +P+ +T    I G C++G++ + + LF T+   N +  +  +N+LI G C
Sbjct: 350 LFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFC 409

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  E ASEL++ +  + +  + + Y ILI+A    G + +   L   M E G    + 
Sbjct: 410 KVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLV 469

Query: 351 TFNTLMISF 359
           T NT++  +
Sbjct: 470 TCNTVIKGY 478



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 175/380 (46%), Gaps = 61/380 (16%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N++I G C +G    A  ++ +M   G  P+ TT +TL+    R  N +   ++  EM
Sbjct: 190 TYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEM 249

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------------- 131
           +       G+  P++  + SLI    ++R +DQ    F +MK  G+              
Sbjct: 250 LRQ-----GVV-PDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGY 303

Query: 132 --NANTL---------------------------LCKKTKLVEANRLLELMMQRGLNPVI 162
             N N L                           LCK+  L +A++L + M++RG  P  
Sbjct: 304 CRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDF 363

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
           +T+T L++G+C  G +  A++LF +M ++   PD+ +Y+ LI+G+CK   +E+A  +   
Sbjct: 364 YTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDG 423

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
           MI    +KIF         P   T  I I+  C  GHV E   L+  +     +  +   
Sbjct: 424 MI---SRKIF---------PNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTC 471

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N++I+G C+ G    A E   ++  K +  D ++YN LI+   +E  + K    +  ME+
Sbjct: 472 NTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEK 531

Query: 343 NGCALDVDTFNTLMISFLQK 362
            G   D+ T+N +M  F ++
Sbjct: 532 EGLLPDIITYNVVMNGFCRQ 551



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 175/368 (47%), Gaps = 37/368 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N++ F+ LI+ +     +R+ ++  + + + G   ++  C++L+ GL +   + L  ++H
Sbjct: 47  NNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVH 106

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
           +E+V       GI + NV+    +++ LCKD   D  K    EM+  GI A     NTL+
Sbjct: 107 REVVR-----SGI-ELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLI 160

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C++  L EA  ++  M  +GL P +FTY  ++NG C  G+   A  +   M   G  
Sbjct: 161 GAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLS 220

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG--------------FKK---------I 231
           PD  +Y+ L+   C+  N  EA  +  EM+  G              F +          
Sbjct: 221 PDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVY 280

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F +MK   +VP+     + + G C+NG++LE +++   +    C L V  +N+++ G CK
Sbjct: 281 FRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCK 340

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
             +   A +LF+++  +  + D   +  LIH   ++G + K   L  +M +     D+  
Sbjct: 341 EKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVA 400

Query: 352 FNTLMISF 359
           +NTL+  F
Sbjct: 401 YNTLIDGF 408



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 168/354 (47%), Gaps = 27/354 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           FG  +R+   P + V+F+SLI  F    ++  A    + M  FG  P+      L+ G  
Sbjct: 246 FGEMLRQGVVP-DLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYC 304

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R GNM   LK+  EM+    + G +   +V  Y ++++GLCK++++     LF EM ++G
Sbjct: 305 RNGNMLEALKIRDEML----EQGCVL--DVIAYNTILNGLCKEKMLTDADKLFDEMVERG 358

Query: 131 INAN-----TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
              +     TL+   C+   + +A  L   M QR + P I  Y  L++G+C VG++  A 
Sbjct: 359 ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKAS 418

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            L+D M  +   P+  +Y +LIN YC   +V EA  +   MI  G K            P
Sbjct: 419 ELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIK------------P 466

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              TCN  I G C++G   +  E    +           +N+LI G  +    + A    
Sbjct: 467 TLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWI 526

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           NK+  + L+ D++ YN++++   ++G++++   +L  M E G   D  T+  L+
Sbjct: 527 NKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALI 580



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 109/230 (47%), Gaps = 15/230 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  FG+  +R  +P + V +N+LI GFC  G +  AS+L   M +    PN  T   LI
Sbjct: 382 ALSLFGTMTQRNIKP-DIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILI 440

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
                 G+++   +L   M+       GI KP +    ++I G C+     +  +    M
Sbjct: 441 NAYCSVGHVSEAFRLWDVMIEK-----GI-KPTLVTCNTVIKGYCRSGDSSKADEFLGRM 494

Query: 127 KDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             KG     I+ NTL+    ++  + +A   +  M + GL P I TY  ++NG+C  G++
Sbjct: 495 IAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRM 554

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
             A  +   M  KG  PD  +Y+ LING+    N+ EA     EM+  GF
Sbjct: 555 QEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGF 604



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 95/182 (52%), Gaps = 14/182 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+  LI  +C  G++ +A +L   M   G +P + TC+T+I G  R+G+ +   +  
Sbjct: 432 NHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFL 491

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
             M+       G+  P+   Y +LI+G  ++  +D+      +M+ +G     I  N ++
Sbjct: 492 GRMIAK-----GV-APDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVM 545

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C++ ++ EA  +L  M+++G+NP   TYT L+NG+     +N A    D M ++GF 
Sbjct: 546 NGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFA 605

Query: 195 PD 196
           PD
Sbjct: 606 PD 607



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 14/207 (6%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G N ++F    L+  Y    K+      F  +  KG++  + + + L+ G  K   VE A
Sbjct: 45  GTNNLVFDL--LIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELA 102

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
             V RE++ +G +         NV    +T NI ++ LCK+G   +V      +E +   
Sbjct: 103 WEVHREVVRSGIE--------LNV----YTLNIMVNALCKDGKFDDVKSFLSEMEGNGIY 150

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             +  +N+LI   C+ G+ E A E+ N ++ K L   +  YN +I+ L K+G+  +   +
Sbjct: 151 ADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGI 210

Query: 337 LLSMEENGCALDVDTFNTLMISFLQKE 363
           L+ M   G + D  T+NTL++   +++
Sbjct: 211 LIEMLNIGLSPDTTTYNTLLVESCRRD 237


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 166/347 (47%), Gaps = 41/347 (11%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+ SLI   C  GN+  A +   +M   G RPN  T  +LI G  + G M+   +
Sbjct: 340 PPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYR 399

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           +  EM+         + P +  Y +L++G C    +++   L   M+ KG++ + +    
Sbjct: 400 IWDEMIRSG------FPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYST 453

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                C+  +L  A ++   M+++G++P   TY+ L+ G C   ++N A  LF  M  K 
Sbjct: 454 IIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKS 513

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
            +PD F+Y+ LINGYCK  ++ EA+N+  EMI  GF            +P+T T N+ I+
Sbjct: 514 LLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGF------------LPDTVTYNVLIN 561

Query: 253 GLCKNGHVLE----VMELFPTLEISNCELFVEIFNS-----------LIRGCCKFGIFEI 297
           GL K     E    +++LF    I N   +  +  S           LI+G C  G+   
Sbjct: 562 GLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNE 621

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           A ++F  +  +N   +   YN++IH   ++G + K + L   M + G
Sbjct: 622 ADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFG 668



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 186/426 (43%), Gaps = 95/426 (22%)

Query: 14  FIRRCYR-------PLNDVTFNSLIKGFCMEGN--------------------------- 39
           F  + YR        LN  ++N LI+GFC  GN                           
Sbjct: 186 FAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVI 245

Query: 40  --------IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM------ 85
                   I +A +L++ M   G  PN+ T + +I GL R G +  T  +  EM      
Sbjct: 246 GAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFA 305

Query: 86  ---------VNGMGDFGGIYK--------------PNVFCYGSLIDGLCKDRLVDQTKDL 122
                    VNG    G  ++              P+V  Y SLI+ +CK   +++  + 
Sbjct: 306 PDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEF 365

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F +M  +G+  N +          +K  + EA R+ + M++ G  P I TY  LLNG+C+
Sbjct: 366 FDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCV 425

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G++  AI L   M  KG  PDV SYS +I G+C+   ++ A  ++ EM+  G       
Sbjct: 426 SGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKG------- 478

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCKF 292
                V P+  T +  I GLC+   + E  +LF   E+ N  L  + F   SLI G CK 
Sbjct: 479 -----VSPDAITYSSLIQGLCEQRRLNEACDLFQ--EMLNKSLLPDEFTYTSLINGYCKE 531

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G    A  L +++  K  + D V YN+LI+ L K+ + ++   LLL +  +    +  T+
Sbjct: 532 GDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITY 591

Query: 353 NTLMIS 358
           +TL+ S
Sbjct: 592 DTLIES 597



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 178/370 (48%), Gaps = 23/370 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F     R  RP N VT+ SLI GF  +G + +A ++  +M   G  P + T + L+
Sbjct: 362 AMEFFDQMHVRGLRP-NGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALL 420

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G   +G M   + L    + GM   G    P+V  Y ++I G C+ + +D+   +  EM
Sbjct: 421 NGHCVSGRMEEAIGL----LRGMEGKG--LSPDVVSYSTIIAGFCRYQELDRAFQMNAEM 474

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            +KG++ + +        LC++ +L EA  L + M+ + L P  FTYT L+NGYC  G +
Sbjct: 475 VEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDL 534

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV-----SREMILNGFKKIFN 233
           N A+ L D M +KGF+PD  +Y+VLING  K     EA  +       E I NG      
Sbjct: 535 NEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGI-TYDT 593

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            ++ C+ + E  +    I G C  G + E  ++F ++   N +    ++N +I G C+ G
Sbjct: 594 LIESCSDI-EFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDG 652

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A +L+ ++     +   V    L+ AL  EG  ++ N ++  +  + C L     +
Sbjct: 653 NVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILRS-CKLSDAELS 711

Query: 354 TLMISFLQKE 363
             ++    KE
Sbjct: 712 KALVQINHKE 721



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 141/317 (44%), Gaps = 45/317 (14%)

Query: 43  ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102
           A ++ ++M   G   NV + + LI G    GN+ + L+  +EM            PNV  
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRC------LPNVVT 240

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVI 162
           Y ++I   CK + +D                           EA +LL  M   GL P +
Sbjct: 241 YNTVIGAYCKLKRID---------------------------EAFKLLRSMGLEGLEPNL 273

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            TY  ++NG C VG++     +   M RKGF PD  +Y+ L+NGYCK  N  +A+ +  E
Sbjct: 274 LTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSE 333

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
           M+ NG              P+  T    I+ +CK G++   ME F  + +         +
Sbjct: 334 MLRNGLP------------PDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTY 381

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
            SLI G  + G  + A  +++++        +V YN L++     G++++   LL  ME 
Sbjct: 382 TSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEG 441

Query: 343 NGCALDVDTFNTLMISF 359
            G + DV +++T++  F
Sbjct: 442 KGLSPDVVSYSTIIAGF 458



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 13/225 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+K  ++ A ++   M+  G++  +F+Y  L+ G+C  G + + +  F+ M R   +P+V
Sbjct: 180 CRKP-VIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNV 238

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ +I  YCK   ++EA  + R M L G +            P   T N+ I+GLC+ 
Sbjct: 239 VTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLE------------PNLLTYNMVINGLCRV 286

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + E   +   ++          +N+L+ G CK G F  A  L +++    L  DVV Y
Sbjct: 287 GRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTY 346

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             LI+ + K G + +       M   G   +  T+ +L+  F QK
Sbjct: 347 TSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQK 391



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 84/212 (39%), Gaps = 30/212 (14%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL      I++ + P + VT+N LI G   +   R+A +L+ K+      PN  T DTLI
Sbjct: 537 ALNLHDEMIKKGFLP-DTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLI 595

Query: 67  ---------------TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC 111
                           G    G MN   ++ + M+          KPN   Y  +I G C
Sbjct: 596 ESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQ------KPNEAVYNVIIHGHC 649

Query: 112 KDRLVDQTKDLFMEMKDKGINANTL----LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           +D  V +   L+ EM D G   +T+    L K       +  L L+++  L     +   
Sbjct: 650 RDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILRSCKLSDAE 709

Query: 168 LLNGYCLV----GKVNVAIALFDSMARKGFMP 195
           L      +    G ++    L   MA+ GF+P
Sbjct: 710 LSKALVQINHKEGNIDAVFNLLTEMAKDGFLP 741


>gi|302776342|ref|XP_002971343.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
 gi|300161325|gb|EFJ27941.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
          Length = 584

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 181/385 (47%), Gaps = 40/385 (10%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GAL+   + +     P N   F SLI        + DA++ ++ M   G  P+V T   +
Sbjct: 77  GALLILATMLHSGTPPPNQHAFASLIDALSKSTRLADAARALELMRDAGIHPDVVTFTVM 136

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I G  +   M    ++ QEM+          +P+ F YG LIDG CK+  +D+  +L  E
Sbjct: 137 IRGFCKNRMMERAWEIFQEMIKS-----NRCQPDCFLYGVLIDGYCKELRMDRALELLRE 191

Query: 126 MK-DKGINANTL--------LCKKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLV 175
           M+ ++ I  + +        LC+  + +EA + L E M+ +G +P + TYT L+ G C  
Sbjct: 192 MRVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSLIRGACKA 251

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------------ 223
            K+ +A+ ++++M  +   P + SYSV+I+G  K   V +A  V REM            
Sbjct: 252 KKMKLAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIY 311

Query: 224 --ILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
             +++G  K         ++  MK     P   T    ID  C+N      + LF  +  
Sbjct: 312 TTLIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIR- 370

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
             C L V ++ +++ G C+    + A  LF ++    + AD  AYN+L+H   +  + ++
Sbjct: 371 DYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSERPEE 430

Query: 333 ENYLLLSM-EENGCALDVDTFNTLM 356
              +L  + ++ GC  ++ T+NT++
Sbjct: 431 AFRILEELGDDPGCVANLLTYNTVI 455



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 48/263 (18%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  + + + R  +P   V+++ +I G    G + DA ++V++M T GC  NV    TLI
Sbjct: 257 AVRIWNAMLERKIQP-TIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLI 315

Query: 67  TGLRRTGNMNLTLKLHQ---------------------------EMVNGMGDFGGIYKP- 98
            GL ++G ++    L++                           E   G+ D    Y P 
Sbjct: 316 DGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIRDYCPL 375

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--------KKTKLVEANRLL 150
           +V  Y +++ GLC++R +D  + LF EM+  G++A+T           +  +  EA R+L
Sbjct: 376 DVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSERPEEAFRIL 435

Query: 151 ELMMQRGLNPV----IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
           E +   G +P     + TY  ++ G CL       + LF  M ++G  PD  +YS LI+ 
Sbjct: 436 EEL---GDDPGCVANLLTYNTVIAGCCL----ESGMVLFYEMRQRGIAPDFATYSALIDR 488

Query: 207 YCKNFNVEEAMNVSREMILNGFK 229
              +  +  A ++  EM+ +G  
Sbjct: 489 LLGSGEIGRAFDLCEEMLASGLS 511



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 36/179 (20%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R Y PL+   + +++ G C E  + DA  L ++M   G   +    + L+ G  R+    
Sbjct: 370 RDYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSERPE 429

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              ++ +E    +GD  G    N+  Y ++I G C    ++    LF EM+         
Sbjct: 430 EAFRILEE----LGDDPGCVA-NLLTYNTVIAGCC----LESGMVLFYEMR--------- 471

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
                             QRG+ P   TY+ L++     G++  A  L + M   G  P
Sbjct: 472 ------------------QRGIAPDFATYSALIDRLLGSGEIGRAFDLCEEMLASGLSP 512


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 161/341 (47%), Gaps = 28/341 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+  LI   C  G +  A +L  KM      P+  T  TL+    + G++    +   E
Sbjct: 306 ITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNE 365

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLLC 138
           M V+G       Y P+V  Y  LI+ LCK   VD+  D+   M  KGI       NT++C
Sbjct: 366 MEVDG-------YAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMIC 418

Query: 139 ---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
              K  +L EA  LLE M   G+ P  F+Y   ++ Y   G    AI  F++M ++G MP
Sbjct: 419 GLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMP 478

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
            + + +  +    +   + EA            + IFN++  C + P++ T N+ +    
Sbjct: 479 SIAACNASLYTLAETGRISEA------------EDIFNDLHKCGLSPDSVTYNMLMKCYS 526

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G + +  +L   +    CE  V I NSLI    K G  + A ++F +L    L   VV
Sbjct: 527 KAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVV 586

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            YNIL+  LGKEG+I K   L  SM E+GC  +  TFN+L+
Sbjct: 587 TYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLL 627



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 148/333 (44%), Gaps = 45/333 (13%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N+ T+N L+        I     L  +M + GC PN  T + +I+ L ++ N+N  L L+
Sbjct: 830  NNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLY 889

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             E+++G  DF     P    YG LIDGL K    +Q   +F EM D G   N+++     
Sbjct: 890  YELMSG--DFS----PTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVI----- 938

Query: 143  LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                                  Y  L+NG+   G+++ A  LF  M ++G  PD+ SY++
Sbjct: 939  ----------------------YNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTI 976

Query: 203  LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
            L+   C    ++EA+            + F E+KL  + P+T + N  I+GL K+  + E
Sbjct: 977  LVECLCITGRIDEAV------------QYFEELKLTGLDPDTVSYNFIINGLGKSRRLDE 1024

Query: 263  VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             + LF  ++       +  +N+LI      G  ++A +++ +L    L   V  YN LI 
Sbjct: 1025 ALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIR 1084

Query: 323  ALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
                 G   +   +   M   GC+ + +TF  L
Sbjct: 1085 GHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQL 1117



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 158/391 (40%), Gaps = 59/391 (15%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           + +C    + VT+N L+K +   G I  A+QL+ +M + GC P+V   ++LI  L + G 
Sbjct: 506 LHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGR 565

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++   K+   + N          P V  Y  L+ GL K+  + +  +LF  M + G   N
Sbjct: 566 VDAAWKMFGRLKNLK------LAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPN 619

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           T+        L K   +  A ++   M     NP + TY  ++ G    G+++ A   F 
Sbjct: 620 TITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFH 679

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI----LNGFKKIFNEMKLCNVV- 241
            M +K   PD  +   LI G  ++  VE+A+ V  E +    L    + + E+  C +  
Sbjct: 680 QM-KKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTE 738

Query: 242 ---------PETFTCN----------IFIDGLCKNGHVLEVMELF----------PTLEI 272
                     E   CN            I  LCK    L+   +F          PTLE 
Sbjct: 739 AEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLES 798

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
            NC         L+ G       E A ELF  +       +   YN+L+ A GK  +I K
Sbjct: 799 YNC---------LMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINK 849

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              L   M   GC  +  T N ++IS L K 
Sbjct: 850 LYDLYSEMRSRGCEPNAITHN-IIISALVKS 879



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 135/327 (41%), Gaps = 54/327 (16%)

Query: 22  LNDVTFNSLIK----GFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           LN  ++N LI     GFC E     A ++ K+M + G +P++ T   L+  L R G+   
Sbjct: 199 LNAYSYNGLIHLLLPGFCNE-----ALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRK 253

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137
            + L +EM   +G      +PN++ Y   I  L + R +D    +F EM D+G       
Sbjct: 254 IMNLLEEM-KSIG-----LRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCG----- 302

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
                                 P + TYT L++  C  GK++ A  L+  M      PD 
Sbjct: 303 ----------------------PDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDR 340

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y  L++ + K  ++E              K+ +NEM++    P+  T  I I+ LCK+
Sbjct: 341 VTYITLMDKFGKVGDLETV------------KRFWNEMEVDGYAPDVVTYTILIEALCKS 388

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V    ++   +        +  +N++I G  K    + A EL   +    +     +Y
Sbjct: 389 GDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSY 448

Query: 318 NILIHALGKEGQIKKENYLLLSMEENG 344
            + I   GK G   K      +M++ G
Sbjct: 449 VLFIDYYGKSGDPAKAIDTFETMKKRG 475



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 120/272 (44%), Gaps = 21/272 (7%)

Query: 94   GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-----LLCKKTKLVEANR 148
            GI+ P +  Y  L+DGL      ++  +LF +MK  G + N      LL    K    N+
Sbjct: 791  GIH-PTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINK 849

Query: 149  LLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
            L +L   M  RG  P   T+  +++       +N A+ L+  +    F P   +Y  LI+
Sbjct: 850  LYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLID 909

Query: 206  GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
            G  K    E+AM            KIF EM      P +   NI I+G  K+G +    E
Sbjct: 910  GLLKAGRSEQAM------------KIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACE 957

Query: 266  LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
            LF  +        ++ +  L+   C  G  + A + F +L    L  D V+YN +I+ LG
Sbjct: 958  LFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLG 1017

Query: 326  KEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
            K  ++ +   L   M+  G + D+ T+N L++
Sbjct: 1018 KSRRLDEALSLFSEMKNRGISPDLYTYNALIL 1049



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 150/368 (40%), Gaps = 32/368 (8%)

Query: 3   KVLGALMAFGSFIRR-CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           K+L AL  FGS     C  P N +TFNSL+        +  A ++  +M    C P+V T
Sbjct: 600 KILKALELFGSMTESGC--PPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLT 657

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +T+I GL R G ++       +M   +        P+     +LI G+ +   V+    
Sbjct: 658 YNTIIYGLIREGRIDYAFWFFHQMKKFLS-------PDYVTLCTLIPGVVRHGRVEDAIK 710

Query: 122 LFMEMKDKG-INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           + ME   +  +  N+         +  + ++ EA    E+++   +        PL+   
Sbjct: 711 VVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVL 770

Query: 173 CLVGKVNVAIALFDSMARK-GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           C   K   A  +FD   +  G  P + SY+ L++G   +   E+A+            ++
Sbjct: 771 CKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKAL------------EL 818

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F +MK     P  FT N+ +D   K+  + ++ +L+  +    CE      N +I    K
Sbjct: 819 FEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVK 878

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
                 A +L+ +L   +       Y  LI  L K G+ ++   +   M + GC  +   
Sbjct: 879 SNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVI 938

Query: 352 FNTLMISF 359
           +N L+  F
Sbjct: 939 YNILINGF 946



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 95/235 (40%), Gaps = 32/235 (13%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN--- 205
           + +LM ++ +   + TY  +     + G +  A      M   GF+ + +SY+ LI+   
Sbjct: 153 VFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLL 212

Query: 206 -GYCKNFNVEEAMNVSREMILNGFK--------------------KIFN---EMKLCNVV 241
            G+C      EA+ V + MI  G K                    KI N   EMK   + 
Sbjct: 213 PGFC-----NEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLR 267

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P  +T  I I  L +   + +   +F  ++   C   V  +  LI   C  G  + A EL
Sbjct: 268 PNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKEL 327

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + K+   +   D V Y  L+   GK G ++        ME +G A DV T+  L+
Sbjct: 328 YVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILI 382



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%)

Query: 26   TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            T+N+LI+G  + GN   A  + KKM   GC PN  T   L     R G
Sbjct: 1078 TYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAG 1125


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 170/354 (48%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 107 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 166

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 167 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 211

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G C  G+V++A+
Sbjct: 212 ------------------SKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAM 253

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 254 EIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK------------P 301

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           + FT    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 302 DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKML 361

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++   +L  D   Y ++I+   K+G + K + LL  M+ +G A  V T+N LM
Sbjct: 362 REMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 415



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 155/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G  RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 61  FSGLITAYLESGFXRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 120

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 121 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 174

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 175 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGV 234

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G CKN  V+ AM + + M+              +++P+  T N  I GLCK G
Sbjct: 235 TFTTLIDGRCKNGRVDLAMEIYKRMLSQ------------SLLPDLITYNTLIYGLCKKG 282

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 283 DLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT 342

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M       D  T+  ++  F +K
Sbjct: 343 ALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKK 386



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 232 NGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGD----LKQA 287

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++++ M   G   KP+ F Y +LIDG CK+  +D   +    M  + I  + +      
Sbjct: 288 HDLIDEMSMKG--LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALI 345

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+   L P   TYT ++N +C  G V     L   M R G  
Sbjct: 346 SGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHA 405

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 406 PSVVTYNVLMNG 417


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 173/372 (46%), Gaps = 37/372 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++VT+ +L+ GFC    +  A ++   M   G  P+   C  +I  LR+   +     L 
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLA 326

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +    +GD G +  PNVF Y +LID LCK+   D    LF EM  +G+  N +      
Sbjct: 327 CK----LGDLGMV--PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILI 380

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+  + +A  L + M  +G+   ++ Y  L+NGYC  G ++ A  L   M ++G  
Sbjct: 381 HALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLT 440

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKI 231
           P   SYS LI G C+N ++  AM + REM              ++NGF          ++
Sbjct: 441 PTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARL 500

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F++M   NV+P   T N+ I+G C  G++ +  +L+  +     +     + SLI G C 
Sbjct: 501 FDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCL 560

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
                 A+E    L     V +  +   L++ L +EG+  +  +L   M   G  LD+ +
Sbjct: 561 TSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVS 620

Query: 352 FNTLMISFLQKE 363
           F  ++ + L++ 
Sbjct: 621 FTIIVYAALKQH 632



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 158/366 (43%), Gaps = 38/366 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N+ TF +LI GFC +  + +A++L  KM      PN  T + +I G    GN+    +L
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQL 535

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           + +MV  MG      KP+ + Y SLI GLC    V +  +   ++++     N       
Sbjct: 536 YDQMVE-MG-----LKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTAL 589

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L ++ +  E   L + M  RG+   + ++T ++           +  LF  M  +G 
Sbjct: 590 LYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGV 649

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK----------------------- 230
            PD   Y+ +I+   K  N+ +A+N   +M+++G+                         
Sbjct: 650 KPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAEL 709

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +  EM   NV+P  FT N F+D     G + +  +L   +   +    V  FN LI+G C
Sbjct: 710 LCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVS-FNILIKGLC 768

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A +L  K++      D ++Y+ +IH L K G I K   L   M   G   DV 
Sbjct: 769 KAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVV 828

Query: 351 TFNTLM 356
            +N  +
Sbjct: 829 AYNIFI 834



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 168/371 (45%), Gaps = 50/371 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTFN +I+G+C+ GNIR A QL  +M   G +P+  T  +LI+GL  T  ++   +  
Sbjct: 512 NEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFV 571

Query: 83  QEMVNGM------------------GDFGGIY-----------KPNVFCYGSLIDGLCKD 113
            ++ N                    G F   Y           K ++  +  ++    K 
Sbjct: 572 ADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQ 631

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
              +++  LF EMK++G+  + +        L K+  +++A    + M+  G +P   T+
Sbjct: 632 HDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTH 691

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L+N  C  G +  A  L   M     +P+ F+Y+  ++ +    ++E+A ++   M+ 
Sbjct: 692 TVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML- 750

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
                   +  L ++V    + NI I GLCK G + E ++L   +  S        ++++
Sbjct: 751 --------QGHLASIV----SFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTI 798

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I   CK G    A EL+N++  K L  DVVAYNI I      G+  K   +  +M  +G 
Sbjct: 799 IHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGV 858

Query: 346 ALDVDTFNTLM 356
             + DT+  L+
Sbjct: 859 QPNWDTYRALL 869



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 138/313 (44%), Gaps = 26/313 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VT+  LI   C  G I DA  L  KM   G +  V   ++LI G  + G+++      
Sbjct: 372 NEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRA---- 427

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + +++GM   G    P    Y  LI GLC++  +    +L  EM ++GI  N        
Sbjct: 428 RGLLSGMVKEG--LTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALI 485

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  K+ EA RL + M+   + P   T+  ++ GYCLVG +  A  L+D M   G  
Sbjct: 486 NGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLK 545

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD ++Y  LI+G C    V +A             +   +++    V   F+    + GL
Sbjct: 546 PDNYTYRSLISGLCLTSGVSKA------------NEFVADLENSYAVLNNFSLTALLYGL 593

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            + G   E   L+  + +   +L +  F  ++    K    E +  LF ++  + +  D 
Sbjct: 594 FREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDD 653

Query: 315 VAYNILIHALGKE 327
           + Y  +I AL KE
Sbjct: 654 IFYTCMIDALSKE 666



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 130/290 (44%), Gaps = 31/290 (10%)

Query: 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
           + Y + I   C+ R +D  + L + M+ +G+ A+ +        LCK  ++ EA  +  +
Sbjct: 199 YVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNV 258

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+  G+     TY  L+ G+C + ++ +A+ +   M R GF+P   + S +I+   K   
Sbjct: 259 MVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKEL 318

Query: 213 VEEAMNVSRE-----MILNGFK------------------KIFNEMKLCNVVPETFTCNI 249
           VEEA +++ +     M+ N F                   ++F EM    + P   T  I
Sbjct: 319 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 378

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            I  LCK G + + + LF  +     ++ V  +NSLI G CK G  + A  L + +  + 
Sbjct: 379 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L     +Y+ LI  L + G +     L   M E G A +  TF  L+  F
Sbjct: 439 LTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGF 488



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 114/266 (42%), Gaps = 20/266 (7%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLL 150
           N +    ++  L K R     +DLF +M   G++ +  +        C+   L  A  L+
Sbjct: 162 NQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV 221

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             M   G+      Y  L+ G C   +V  A+ + + M   G   D  +Y  L+ G+C+ 
Sbjct: 222 VRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRM 281

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
             +E A+ ++ +MI  GF            VP    C+  ID L K   V E   L   L
Sbjct: 282 EELEMALRITHDMIRLGF------------VPSEANCSFMIDELRKKELVEEAFSLACKL 329

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                   V  +N+LI   CK   F+ A  LF +++ + L  + V Y ILIHAL K G I
Sbjct: 330 GDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMI 389

Query: 331 KKENYLLLSMEENGCALDVDTFNTLM 356
           +    L   M + G  + V  +N+L+
Sbjct: 390 EDALCLFDKMRDKGIKVTVYPYNSLI 415



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 114/276 (41%), Gaps = 29/276 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ V+F  ++     + +   +  L ++M   G +P+      +I  L +  NM   L  
Sbjct: 616 LDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNC 675

Query: 82  HQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
             +MV +G       Y PN   +  LI+ LCK   +   + L  EM    +  N      
Sbjct: 676 WDQMVIDG-------YSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNC 728

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                  +  + +A  L   M+Q  L  ++ ++  L+ G C  GK+  AI L   +   G
Sbjct: 729 FLDYFATEGDMEKAKDLHSAMLQGHLASIV-SFNILIKGLCKAGKIQEAIDLMRKITESG 787

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F PD  SYS +I+  CK  ++ +A  +  EM+  G K            P+    NIFI 
Sbjct: 788 FSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLK------------PDVVAYNIFIR 835

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
               +G   + + ++  +  S  +   + + +L+ G
Sbjct: 836 WCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 49/250 (19%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L L +  G+    +T + +L     + +  +A  LFD M + G   D + Y+  I  YC
Sbjct: 150 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYC 209

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL-- 266
           ++ N++ A  +   M   G K         + VP     N+ + GLCKN  V E +E+  
Sbjct: 210 ESRNLDGARGLVVRMESEGVK--------ASAVP----YNVLMYGLCKNMRVQEAVEVKN 257

Query: 267 -------------FPTLEISNC-----ELFVEIFNSLIR-------GCCKFGI-----FE 296
                        + TL    C     E+ + I + +IR         C F I      E
Sbjct: 258 VMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKE 317

Query: 297 IASELFNKLSCK----NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           +  E F+ L+CK     +V +V AYN LI  L K  +    + L   M   G   +  T+
Sbjct: 318 LVEEAFS-LACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTY 376

Query: 353 NTLMISFLQK 362
             L+ +  ++
Sbjct: 377 AILIHALCKR 386


>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Brachypodium distachyon]
          Length = 410

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 157/325 (48%), Gaps = 26/325 (8%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
            +L+ G+C  G++ +A ++   M   G  PN  T   LI G    G     L L ++M  
Sbjct: 42  TALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRREKGLALFEKM-- 99

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCK 139
                GGI +PN++ Y  L+   C+    ++ + LF EM  KGI  N +        LC+
Sbjct: 100 ---RIGGI-EPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLCR 155

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             K+ +A +LLELM + G+ P + T+  L++GY   GK++ A+   + M   G+ P   +
Sbjct: 156 YRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVT 215

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+ LI G+C+          +R+MI     + F++MK   + P   T  I ID   +   
Sbjct: 216 YNALIAGFCR----------ARDMIRA--NRAFSDMKERGLAPTKVTYTILIDAFAREND 263

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + +  E+F  +E +  E+ V  +  L+   C  G  + A +LF  +  K L    V Y++
Sbjct: 264 MDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDM 323

Query: 320 LIHALGKEGQIKKENYLLLSMEENG 344
           LI+  G+EG   K   L++ M + G
Sbjct: 324 LIYGYGREGSSYKAMKLIMEMRKKG 348



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 23/242 (9%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+   + EA R+ ++M + GL P   T+T L++GY + G+    +ALF+ M   G  P++
Sbjct: 49  CRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRREKGLALFEKMRIGGIEPNL 108

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------FKKIFNEMKLCNV 240
           ++Y++L+  +C+    E A  +  EM   G                 ++K+ +  +L  +
Sbjct: 109 YTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLCRYRKMKDATQLLEL 168

Query: 241 V------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           +      P   T N+ +DG  K G +   +     + ++  +     +N+LI G C+   
Sbjct: 169 MRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRARD 228

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A+  F+ +  + L    V Y ILI A  +E  + K   +   ME+ G  +DV T+  
Sbjct: 229 MIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGMEKAGLEVDVRTYGV 288

Query: 355 LM 356
           L+
Sbjct: 289 LV 290



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 116/252 (46%), Gaps = 26/252 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++N+LI G C    ++DA+QL++ M   G RP+V T + L+ G  + G M+  L   
Sbjct: 142 NVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFS 201

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M        G Y+P+   Y +LI G C+ R + +    F +MK++G+    +      
Sbjct: 202 NQM-----RMAG-YQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILI 255

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               ++  + +A  +   M + GL   + TY  L++  C+ G +  A  LF S+  KG  
Sbjct: 256 DAFARENDMDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQ 315

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
                Y +LI GY +  +  +AM +  EM   GF            VP + +  + I  L
Sbjct: 316 VGNVIYDMLIYGYGREGSSYKAMKLIMEMRKKGF------------VPNSASYGLTIRIL 363

Query: 255 CKNGHVLEVMEL 266
           C +G   E   L
Sbjct: 364 CNDGKCSEAEAL 375



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 12/194 (6%)

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L++GYC  G V  A  +FD M R G  P+  +++ LI+GY  +   E+ +        
Sbjct: 42  TALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRREKGL-------- 93

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
                +F +M++  + P  +T NI +   C+ G       LF  +        V  +N+L
Sbjct: 94  ----ALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTL 149

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G C++   + A++L   +  + +   VV +N+L+   GK G++    +    M   G 
Sbjct: 150 IAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGY 209

Query: 346 ALDVDTFNTLMISF 359
                T+N L+  F
Sbjct: 210 QPSAVTYNALIAGF 223



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 15/200 (7%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P + VT+N+LI GFC   ++  A++    M   G  P   T   LI    R  +M+  
Sbjct: 209 YQP-SAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKA 267

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL- 137
                EM  GM   G   + +V  YG L+  LC +  +   + LF  + +KG+    ++ 
Sbjct: 268 F----EMFAGMEKAG--LEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIY 321

Query: 138 -------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                   ++    +A +L+  M ++G  P   +Y   +   C  GK + A AL D M R
Sbjct: 322 DMLIYGYGREGSSYKAMKLIMEMRKKGFVPNSASYGLTIRILCNDGKCSEAEALIDDMVR 381

Query: 191 KGFMPDVFSYSVLINGYCKN 210
            G         VL+N   + 
Sbjct: 382 AGVQTSESVRQVLLNAKARQ 401


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 169/340 (49%), Gaps = 26/340 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI G C  G+I    QL  KM       N  T   LI G  + G     ++L+
Sbjct: 198 NVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELY 257

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M        GI  PNV+ Y S+I   C D  ++   +LF EM+++G+  N +      
Sbjct: 258 EKM-----KLTGIV-PNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLI 311

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ +++EA RL+  M + GL+P + +Y  L++GYC +G ++ A +LF+ M   G  
Sbjct: 312 GGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQS 371

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P + +Y++LI G+ +  N     ++ REM   G              P   T  I +D L
Sbjct: 372 PSLATYNILIAGFSEAKNSAGVTDMVREMEARGLS------------PSKVTYTILMDAL 419

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            ++ ++ +  +++ ++E +     + I+  LI G C  G  + AS+LF  L   +L  + 
Sbjct: 420 VRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPND 479

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           V YN +I+   KEG   +   LL  M ENG   +V ++N+
Sbjct: 480 VIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNS 519



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 28/358 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   I R   P ++ TFN+L+    ++ N  + +  V        + +V +   +I
Sbjct: 114 ALFYFNQMIGRGLVPGSN-TFNNLLI-LLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMI 171

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G    G ++       E++  M + G    PNV  Y +LIDG CK+  +++ K LF +M
Sbjct: 172 KGCCEVGYLDKGF----EVLGQMEEMG--LSPNVVVYTTLIDGCCKNGDIERGKQLFYKM 225

Query: 127 KDKGINAN----TLLC----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            +  + AN    T+L     K     +   L E M   G+ P ++TY  ++   C  GK+
Sbjct: 226 GELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKL 285

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           N A  LFD M  +G   +V +Y+ LI G C+   V EA            +++   MK  
Sbjct: 286 NNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEA------------ERLMCRMKRD 333

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            + P   + N  IDG C  G++ +   LF  ++ S     +  +N LI G  +       
Sbjct: 334 GLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGV 393

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +++  ++  + L    V Y IL+ AL +   I+K   +  SME+ G   D+  +  L+
Sbjct: 394 TDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLI 451



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 133/269 (49%), Gaps = 21/269 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANT------LLCKKTKLVEAN 147
           +  +V  + ++I+   + +L +Q    F +M  +G+   +NT      LL K     +A 
Sbjct: 91  FPTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAW 150

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           R+     +  +   ++++  ++ G C VG ++    +   M   G  P+V  Y+ LI+G 
Sbjct: 151 RVFN-ETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGC 209

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CKN ++E              K++F +M   +VV   +T  + I+G  K G   + +EL+
Sbjct: 210 CKNGDIERG------------KQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELY 257

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             ++++     V  +NS+I  CC  G    A ELF+++  + +  +VV YN LI  L +E
Sbjct: 258 EKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQE 317

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++ +   L+  M+ +G + ++ ++NTL+
Sbjct: 318 RRVLEAERLMCRMKRDGLSPNLISYNTLI 346


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 170/340 (50%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N LI G+C  G + DA   +++    G  P+  T +T + GL +  ++   LK+   
Sbjct: 160 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDV 219

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           MV    D      P+VF Y  +++ LCK+  +++ K +  +M D+G        NTL   
Sbjct: 220 MVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAA 273

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +L EA  L   +  +G++P ++T+  L+N  C VG  ++A+ LF+ M   G  PD
Sbjct: 274 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 333

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+  C    + +A+++ ++M   G  +             T T N  IDGLCK
Sbjct: 334 EVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR------------STITYNTIIDGLCK 381

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E  E+F  +++         FN+LI G CK    + A EL N++  + L  + + 
Sbjct: 382 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNIT 441

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN ++    K+G IKK   +L +M  NG  +DV T+ TL+
Sbjct: 442 YNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 481



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 179/369 (48%), Gaps = 37/369 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN+L+K  C    +R A  ++++M++ G  P+ TT  TL+ G    G++   L++   
Sbjct: 90  VTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKAR 149

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKD----KGINANTL--- 136
           M+  MG        NV     LI+G CK  R+ D    +  E+ D      I  NT    
Sbjct: 150 MLE-MGCSATKVTVNV-----LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNG 203

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+   +  A +++++M+Q G +P +FTY  ++N  C  G++  A  + + M  +G +PD
Sbjct: 204 LCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 263

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
           + +++ LI   C    +EEA++++R++ + G                         ++F 
Sbjct: 264 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 323

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EMK     P+  T N  ID LC  G + + ++L   +E + C      +N++I G CK  
Sbjct: 324 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKM 383

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A E+F+++  + +  + + +N LI  L K+ +I     L+  M   G   +  T+N
Sbjct: 384 RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYN 443

Query: 354 TLMISFLQK 362
           +++  + ++
Sbjct: 444 SILTHYCKQ 452



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 27/344 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN+LI   C    + +A  L +++   G  P+V T + LI  L + G+ +L L+L +EM
Sbjct: 266 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 325

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL---L 137
            N          P+   Y +LID LC    + +  DL  +M+  G     I  NT+   L
Sbjct: 326 KNSG------CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 379

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CKK ++ EA  + + M  +G++    T+  L++G C   K++ A  L + M  +G  P+ 
Sbjct: 380 CKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNN 439

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ ++  YCK  ++++A ++   M  NGF+             +  T    I+GLCK 
Sbjct: 440 ITYNSILTHYCKQGDIKKAADILETMTANGFE------------VDVVTYGTLINGLCKA 487

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G     +++   + I       + +N +++   +      A  LF +++      D + Y
Sbjct: 488 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTY 547

Query: 318 NILIHALGKEGQIKKENY-LLLSMEENGCALDVDTFNTLMISFL 360
            I+   L + G   KE +  +L M + G   +  +F  L    L
Sbjct: 548 KIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLL 591



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 17/227 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + +T+N++I G C +  I +A ++  +M   G   N  T +TLI GL +   ++   +
Sbjct: 366 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 425

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           L  +M++ G+       +PN   Y S++   CK   + +  D+   M   G   + +   
Sbjct: 426 LINQMISEGL-------QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYG 478

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +   A ++L  M  +G+ P    Y P+L        +  A++LF  MA  
Sbjct: 479 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 538

Query: 192 GFMPDVFSYSVLINGYCKNFN-VEEAMNVSREMILNGFKKIFNEMKL 237
           G  PD  +Y ++  G C+    ++EA +   EM+  GF   F+  ++
Sbjct: 539 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRM 585



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 23/226 (10%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+      Y  LLN      K+ +  +++  M  +G  PDV +++ L+   C+   V  A
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108

Query: 217 MNVSREM--------------ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDG 253
           + +  EM              ++ GF          ++   M          T N+ I+G
Sbjct: 109 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 168

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK G V + +           E     +N+ + G C+      A ++ + +  +    D
Sbjct: 169 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 228

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V  YNI+++ L K GQ+++   +L  M + GC  D+ TFNTL+ + 
Sbjct: 229 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL 274



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 37/206 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A       I    +P N++T+NS++  +C +G+I+ A+ +++ M   G   +V T 
Sbjct: 419 KIDDAFELINQMISEGLQP-NNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTY 477

Query: 63  DTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            TLI GL + G   + LK+ + M + GM       +P    Y  ++  L +   +     
Sbjct: 478 GTLINGLCKAGRTQVALKVLRGMRIKGM-------RPTPKAYNPVLQSLFRRNNIRDALS 530

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL-VGKVNV 180
           LF EM                            + G  P   TY  +  G C   G +  
Sbjct: 531 LFREMA---------------------------EVGEPPDALTYKIVFRGLCRGGGPIKE 563

Query: 181 AIALFDSMARKGFMPDVFSYSVLING 206
           A      M  KGF+P+  S+ +L  G
Sbjct: 564 AFDFMLEMVDKGFIPEFSSFRMLAEG 589


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 179/376 (47%), Gaps = 43/376 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN VT+  LI G C  G  R A Q+++++       NV    T+I GL +   +     L
Sbjct: 156 LNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGL 215

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD---LFMEMKDKGINANTL-- 136
           + EM+           P V  + SLI G C   +V + KD   LF EM  K IN +    
Sbjct: 216 YSEMIVKR------IPPTVVTFSSLIYGFC---IVGKFKDAFRLFNEMVMKNINPDAYTF 266

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LCK+ K+ EA  ++ +MM+ G+ P + TY  L++GYCLV +V  A  +   ++R
Sbjct: 267 NILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISR 326

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---KKIFNEM--KLC------- 238
               P+  SY+++ING+CK   V+EA+ +  EM   G    K  +N +   LC       
Sbjct: 327 MRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPY 386

Query: 239 ----------NVVP-ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                     N +P +  T N  ID  CKN HV + + L   ++    +  +  +N LI 
Sbjct: 387 AWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILID 446

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G CK G  + A ++F  L  K    +   YNI+I+ L KEG   +   LL  ME+NG   
Sbjct: 447 GLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIP 506

Query: 348 DVDTFNTLMISFLQKE 363
           D  T+ T++ +   K+
Sbjct: 507 DAVTYETIIQALFHKD 522



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 154/328 (46%), Gaps = 26/328 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P   VTF+SLI GFC+ G  +DA +L  +M      P+  T + L+  L + G     +K
Sbjct: 225 PPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGK----IK 280

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
             + ++  M   G   +P V  Y +L+DG C    V + K +   +    +  N+     
Sbjct: 281 EAKNVIAVMMKEG--VEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNI 338

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                CK   + EA  L   M  RG+ P   TY  L++G C  G++  A  L D M    
Sbjct: 339 MINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNC 398

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              D+ +Y+ LI+ +CKN +V++A+ + +++  +G +            P   T NI ID
Sbjct: 399 IPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQ------------PNMCTYNILID 446

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK G +    ++F  L I    +    +N +I G CK G+F+ A  L +K+    ++ 
Sbjct: 447 GLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIP 506

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSM 340
           D V Y  +I AL  + + +K   LL  M
Sbjct: 507 DAVTYETIIQALFHKDENEKAQKLLREM 534



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 156/370 (42%), Gaps = 71/370 (19%)

Query: 49  KMATFGCRPNVTTCDTLITGLRRTGNMNLT-LKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107
           +M      P++   + ++T L +T N   T L L  +M     +  G+ KP++F    LI
Sbjct: 56  RMRQIRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQM-----ESKGV-KPDLFTLSILI 109

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           +  C    +     +F ++   G      LC   K+ EA    + ++  G +    TY  
Sbjct: 110 NCYCHLGQMTFAFSVFAKILKMG------LCLNGKVNEALLFHDHVLALGFHLNHVTYGI 163

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN- 226
           L+NG C +G+   A+ +   +  K    +V  YS +I+G CK+  V +A  +  EMI+  
Sbjct: 164 LINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKR 223

Query: 227 -------------------GFK---KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
                               FK   ++FNEM + N+ P+ +T NI +D LCK G + E  
Sbjct: 224 IPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAK 283

Query: 265 ELF---------PTL--------------EISNCELFVEI------------FNSLIRGC 289
            +          PT+              E+   +  + I            +N +I G 
Sbjct: 284 NVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGF 343

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK  + + A  LF+++ C+ +    V YN LI  L K G+I     L+  M  N    D+
Sbjct: 344 CKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADI 403

Query: 350 DTFNTLMISF 359
            T+N+L+  F
Sbjct: 404 VTYNSLIDVF 413



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 16/188 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+NSLI G C  G I  A +LV +M       ++ T ++LI    +  +++  + L 
Sbjct: 367 HKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIAL- 425

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
              V  + + G   +PN+  Y  LIDGLCK   +   +D+F ++  KG N N        
Sbjct: 426 ---VKKIKEHG--IQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMI 480

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+    EA  LL  M   G+ P   TY  ++       +   A  L   M  KG +
Sbjct: 481 NGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGVV 540

Query: 195 PDVFSYSV 202
             V+++ +
Sbjct: 541 --VYAFEI 546


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 169/340 (49%), Gaps = 26/340 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI G C  G+I    QL  KM       N  T   LI G  + G     ++L+
Sbjct: 185 NVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELY 244

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M        GI  PNV+ Y S+I   C D  ++   +LF EM+++G+  N +      
Sbjct: 245 EKM-----KLTGIV-PNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLI 298

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ +++EA RL+  M + GL+P + +Y  L++GYC +G ++ A +LF+ M   G  
Sbjct: 299 GGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQS 358

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P + +Y++LI G+ +  N     ++ REM   G              P   T  I +D L
Sbjct: 359 PSLATYNILIAGFSEAKNSAGVTDMVREMEARGLS------------PSKVTYTILMDAL 406

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            ++ ++ +  +++ ++E +     + I+  LI G C  G  + AS+LF  L   +L  + 
Sbjct: 407 VRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPND 466

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           V YN +I+   KEG   +   LL  M ENG   +V ++N+
Sbjct: 467 VIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNS 506



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 103/198 (52%), Gaps = 12/198 (6%)

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           ++++  ++ G C VG ++    +   M   G  P+V  Y+ LI+G CKN ++E       
Sbjct: 151 VYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERG----- 205

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
                  K++F +M   +VV   +T  + I+G  K G   + +EL+  ++++     V  
Sbjct: 206 -------KQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYT 258

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +NS+I  CC  G    A ELF+++  + +  +VV YN LI  L +E ++ +   L+  M+
Sbjct: 259 YNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMK 318

Query: 342 ENGCALDVDTFNTLMISF 359
            +G + ++ ++NTL+  +
Sbjct: 319 RDGLSPNLISYNTLIDGY 336



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 12/222 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+   L +   +L  M + GL+P +  YT L++G C  G +     LF  M     + + 
Sbjct: 162 CEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQ 221

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           ++Y+VLING+ K       M + ++ I     +++ +MKL  +VP  +T N  I   C +
Sbjct: 222 YTYTVLINGFFK-------MGLKKDGI-----ELYEKMKLTGIVPNVYTYNSMICRCCND 269

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G +    ELF  +        V  +N+LI G C+      A  L  ++    L  ++++Y
Sbjct: 270 GKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISY 329

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N LI      G + K + L   M+ +G +  + T+N L+  F
Sbjct: 330 NTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGF 371



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 24/187 (12%)

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------K 229
           F   V  +  +IN + ++   E+A+    +MI  G                         
Sbjct: 78  FPTHVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAW 137

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
           ++FNE K  NV  + ++  I I G C+ G++ +  E+   +E       V ++ +LI GC
Sbjct: 138 RVFNETK-GNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGC 196

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G  E   +LF K+   ++VA+   Y +LI+   K G  K    L   M+  G   +V
Sbjct: 197 CKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNV 256

Query: 350 DTFNTLM 356
            T+N+++
Sbjct: 257 YTYNSMI 263


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 169/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 104 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSY 163

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 164 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 208

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 209 ------------------SKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAM 250

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 251 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLK------------P 298

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK+G +    E    +   N  L   ++ +LI G C+ G    A ++ 
Sbjct: 299 DKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKML 358

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 359 REMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 154/344 (44%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 58  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 117

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 118 ECG------YPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYI 171

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 172 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSV 231

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 232 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 279

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   + +   +     + +LI GCCK G  + A E   ++  +N   D V Y 
Sbjct: 280 DLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYT 339

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG       +L  M   G   D  T+  ++  F +K
Sbjct: 340 ALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 383



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 98/197 (49%), Gaps = 24/197 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G++     L 
Sbjct: 229 NSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLI 288

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
            EM + G+       KP+   Y +LIDG CKD  +D       E + + I  NT L    
Sbjct: 289 DEMSMKGL-------KPDKITYTTLIDGCCKDGDLDTA----FEHRKRMIQENTRLDDVV 337

Query: 138 --------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                   C++   V+A ++L  M+  GL P   TYT ++N +C  G V     L   M 
Sbjct: 338 YTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 397

Query: 190 RKGFMPDVFSYSVLING 206
           R G +P V +Y+VL+NG
Sbjct: 398 RDGHVPSVVTYNVLMNG 414


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 172/366 (46%), Gaps = 27/366 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++VL A+    S + R     ++VT+ +L+ GFC    +  A ++   M +    P+V +
Sbjct: 244 NRVLEAVEVKNSMVERGIVA-DEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVAS 302

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
           C  ++ GLR+ G+++   +L       +G+ G +  PN+F   +LID LCKDR   + + 
Sbjct: 303 CSFMVDGLRKRGHIDKAFRL----ACHLGELGMV--PNLFACNALIDKLCKDRRFREAER 356

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF  M ++G+  N +        LCK+  + +A  + + M ++G+   ++ Y  L+NGYC
Sbjct: 357 LFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYC 416

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
                + A  L + M  KG  P   SYS LI G C+  ++  AM + REM  NG      
Sbjct: 417 QHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNG------ 470

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                 V    +T    I G CK+G++ E   LF  +  S+       FN +I G C+ G
Sbjct: 471 ------VSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVG 524

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A +L++++  + L  D   Y  LI  L       K    +  +E N   L+  +  
Sbjct: 525 NVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLT 584

Query: 354 TLMISF 359
           TLM  F
Sbjct: 585 TLMYGF 590



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 158/365 (43%), Gaps = 40/365 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +NSLI G+C   N   A  L+ +M   G  P+  +   LI GL R G++   ++LH+EM 
Sbjct: 408 YNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMA 467

Query: 87  -NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            NG+         NV+ + +LI G CKD  +D+   LF +M D  +  N +         
Sbjct: 468 RNGVSG-------NVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGY 520

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+   + +A +L + M+ RGL P  +TY  L++  CL      A    D +     + + 
Sbjct: 521 CRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNS 580

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNE 234
           FS + L+ G+CK   + E  ++  EM   G K                        +F E
Sbjct: 581 FSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFRE 640

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           MK   V P+       ID   K  ++++ +  +  +    C   V  +  LI   CK G 
Sbjct: 641 MKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGY 700

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A  L  ++     + +   YN  +  L  EG+++K   L  ++ E GC  +  TFNT
Sbjct: 701 LSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATILE-GCLANTVTFNT 759

Query: 355 LMISF 359
           L+  F
Sbjct: 760 LIKGF 764



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 163/365 (44%), Gaps = 38/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TF +LI GFC +GN+ +A++L  KM      PN  T + +I G  R GN+    +L+
Sbjct: 474 NVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLY 533

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +MV    D G    P+ + Y SLI  LC      + K+   ++++  +  N+       
Sbjct: 534 DQMV----DRG--LTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLM 587

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+ +L E   + + M  RG+   + ++T ++     +        LF  M  KG  
Sbjct: 588 YGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVK 647

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-------FKKIFN-------------- 233
           PD   ++ +I+ + K  N+ +A+N   +MI +G       +  + N              
Sbjct: 648 PDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQIL 707

Query: 234 --EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
             EM +   +P +FT N F+D L   G + +   L  T+ +  C      FN+LI+G CK
Sbjct: 708 CEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATI-LEGCLANTVTFNTLIKGFCK 766

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  + A +L    +      D ++Y+ +I+ L K G I K   L   M   G   D+  
Sbjct: 767 AGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVA 826

Query: 352 FNTLM 356
           +N L+
Sbjct: 827 YNILI 831



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 152/350 (43%), Gaps = 37/350 (10%)

Query: 41  RDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNV 100
           RDA+ +++   + G      T   ++  L +     L   L  EMV         +  + 
Sbjct: 142 RDAADVLRLSLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCK------FPLDE 195

Query: 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
           + Y + I   C+ R +D  + L   M+ KG+  + +        LC+  +++EA  +   
Sbjct: 196 YVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNS 255

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M++RG+     TY  L+ G+C   ++ +A+ + D M    F+P V S S +++G  K  +
Sbjct: 256 MVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGH 315

Query: 213 VEEAMNVSRE-----MILNGF------------------KKIFNEMKLCNVVPETFTCNI 249
           +++A  ++       M+ N F                  +++F  M    + P   T  I
Sbjct: 316 IDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAI 375

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            I  LCK G + + + +F  +      + V  +NSLI G C+   F  A  L N++  K 
Sbjct: 376 LIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKG 435

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L     +Y+ LI  L ++G +     L   M  NG + +V TF TL+  F
Sbjct: 436 LAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGF 485



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 116/268 (43%), Gaps = 30/268 (11%)

Query: 109 GLCKDRLVDQTKDLFMEMKD-----------KGINANTLLCKKTKLVEANRLLELMMQRG 157
            L K R     +DLF EM              GI A    C+   L  A  LL  M  +G
Sbjct: 169 ALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRA---YCEIRNLDGARGLLTRMESKG 225

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           +      Y  L+ G C   +V  A+ + +SM  +G + D  +Y  L+ G+C+   +E A+
Sbjct: 226 VKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMAL 285

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            ++ +M+   F            VP   +C+  +DGL K GH+ +   L     +    +
Sbjct: 286 EMTDDMLSLHF------------VPSVASCSFMVDGLRKRGHIDKAFRL--ACHLGELGM 331

Query: 278 FVEIF--NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              +F  N+LI   CK   F  A  LF  ++ + L  + V Y ILIH+L K G +     
Sbjct: 332 VPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALC 391

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQKE 363
           +   M E G  + V  +N+L+  + Q +
Sbjct: 392 MFDRMREKGIRVTVYPYNSLINGYCQHD 419



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 131/323 (40%), Gaps = 70/323 (21%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  +  +L+ GFC EG + +   +  +M   G + ++ +   ++            LKL
Sbjct: 578 LNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYA---------ALKL 628

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
           H                         DG       ++   LF EMK+KG+  + +     
Sbjct: 629 H-------------------------DG-------EKISVLFREMKEKGVKPDNVFHTCM 656

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K+  +V+A    + M+  G +P + TYT L+N  C  G ++ A  L + M    F
Sbjct: 657 IDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRF 716

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P+ F+Y+  ++       +E+A             K+ +   L   +  T T N  I G
Sbjct: 717 LPNSFTYNCFLDFLANEGELEKA-------------KVLHATILEGCLANTVTFNTLIKG 763

Query: 254 LCKNGHVLEVMELFPTLEIS----NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            CK G +   ++L      S    +C  +  I N L    CK G    A +L+N++  K 
Sbjct: 764 FCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINEL----CKVGDINKAFQLWNEMLYKG 819

Query: 310 LVADVVAYNILIHALGKEGQIKK 332
           L  D+VAYNILI      G+  K
Sbjct: 820 LKPDIVAYNILIRWCNIHGEFDK 842



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 15/183 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+  LI   C  G +  A  L ++M      PN  T +  +  L   G +     LH
Sbjct: 684 NVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLH 743

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL- 136
             ++ G          N   + +LI G CK   +    DL     + G     I+ +T+ 
Sbjct: 744 ATILEGC-------LANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTII 796

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK   + +A +L   M+ +GL P I  Y  L+    + G+ +  + ++  M    + 
Sbjct: 797 NELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIRWCNIHGEFDKGLGIYSDMVNLKYA 856

Query: 195 PDV 197
            D 
Sbjct: 857 DDT 859


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 170/340 (50%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N LI G+C  G + DA   +++    G  P+  T +T + GL +  ++   LK+   
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDV 311

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           MV    D      P+VF Y  +++ LCK+  +++ K +  +M D+G        NTL   
Sbjct: 312 MVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAA 365

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +L EA  L   +  +G++P ++T+  L+N  C VG  ++A+ LF+ M   G  PD
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+  C    + +A+++ ++M   G  +             T T N  IDGLCK
Sbjct: 426 EVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR------------STITYNTIIDGLCK 473

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E  E+F  +++         FN+LI G CK    + A EL N++  + L  + + 
Sbjct: 474 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNIT 533

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN ++    K+G IKK   +L +M  NG  +DV T+ TL+
Sbjct: 534 YNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 179/369 (48%), Gaps = 37/369 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN+L+K  C    +R A  ++++M++ G  P+ TT  TL+ G    G++   L++   
Sbjct: 182 VTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKAR 241

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKD----KGINANTL--- 136
           M+  MG        NV     LI+G CK  R+ D    +  E+ D      I  NT    
Sbjct: 242 MLE-MGCSATKVTVNV-----LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNG 295

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+   +  A +++++M+Q G +P +FTY  ++N  C  G++  A  + + M  +G +PD
Sbjct: 296 LCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 355

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
           + +++ LI   C    +EEA++++R++ + G                         ++F 
Sbjct: 356 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 415

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EMK     P+  T N  ID LC  G + + ++L   +E + C      +N++I G CK  
Sbjct: 416 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKM 475

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A E+F+++  + +  + + +N LI  L K+ +I     L+  M   G   +  T+N
Sbjct: 476 RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYN 535

Query: 354 TLMISFLQK 362
           +++  + ++
Sbjct: 536 SILTHYCKQ 544



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 27/345 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            TFN+LI   C    + +A  L +++   G  P+V T + LI  L + G+ +L L+L +E
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M N          P+   Y +LID LC    + +  DL  +M+  G     I  NT+   
Sbjct: 417 MKNSG------CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDG 470

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCKK ++ EA  + + M  +G++    T+  L++G C   K++ A  L + M  +G  P+
Sbjct: 471 LCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPN 530

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ ++  YCK  ++++A ++   M  NGF+         +VV    T    I+GLCK
Sbjct: 531 NITYNSILTHYCKQGDIKKAADILETMTANGFE--------VDVV----TYGTLINGLCK 578

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G     +++   + I       + +N +++   +      A  LF +++      D + 
Sbjct: 579 AGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALT 638

Query: 317 YNILIHALGKEGQIKKENY-LLLSMEENGCALDVDTFNTLMISFL 360
           Y I+   L + G   KE +  +L M + G   +  +F  L    L
Sbjct: 639 YKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLL 683



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 17/227 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + +T+N++I G C +  I +A ++  +M   G   N  T +TLI GL +   ++   +
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 517

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           L  +M++ G+       +PN   Y S++   CK   + +  D+   M   G   + +   
Sbjct: 518 LINQMISEGL-------QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYG 570

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +   A ++L  M  +G+ P    Y P+L        +  A++LF  MA  
Sbjct: 571 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 630

Query: 192 GFMPDVFSYSVLINGYCKNFN-VEEAMNVSREMILNGFKKIFNEMKL 237
           G  PD  +Y ++  G C+    ++EA +   EM+  GF   F+  ++
Sbjct: 631 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRM 677



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 23/226 (10%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+      Y  LLN      K+ +  +++  M  +G  PDV +++ L+   C+   V  A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 217 MNVSREM--------------ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDG 253
           + +  EM              ++ GF          ++   M          T N+ I+G
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK G V + +           E     +N+ + G C+      A ++ + +  +    D
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V  YNI+++ L K GQ+++   +L  M + GC  D+ TFNTL+ + 
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL 366



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 37/206 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A       I    +P N++T+NS++  +C +G+I+ A+ +++ M   G   +V T 
Sbjct: 511 KIDDAFELINQMISEGLQP-NNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTY 569

Query: 63  DTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            TLI GL + G   + LK+ + M + GM       +P    Y  ++  L +   +     
Sbjct: 570 GTLINGLCKAGRTQVALKVLRGMRIKGM-------RPTPKAYNPVLQSLFRRNNIRDALS 622

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL-VGKVNV 180
           LF EM + G   + L                           TY  +  G C   G +  
Sbjct: 623 LFREMAEVGEPPDAL---------------------------TYKIVFRGLCRGGGPIKE 655

Query: 181 AIALFDSMARKGFMPDVFSYSVLING 206
           A      M  KGF+P+  S+ +L  G
Sbjct: 656 AFDFMLEMVDKGFIPEFSSFRMLAEG 681



 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 40/223 (17%), Positives = 92/223 (41%), Gaps = 11/223 (4%)

Query: 135 TLLCKKTKLVEANRLLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           T L ++     A R+L   + R    P    Y  ++     VG +++   L   M R+G 
Sbjct: 46  TALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGH 105

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
              +     +++ +  ++  ++  + + ++ILN  + +F       +  +T   N  ++ 
Sbjct: 106 QVKLG----VVHSFLDSYEGQQLFDDAVDLILNQLQPLFG------IQADTVVYNHLLNV 155

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           L +   +  +  ++  +     +  V  FN+L++  C+      A  +  ++S + +  D
Sbjct: 156 LVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPD 215

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +  L+    +EG I+    +   M E GC+    T N L+
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLI 258


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 170/340 (50%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N LI G+C  G + DA   +++    G  P+  T +T + GL +  ++   LK+   
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDV 311

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           MV    D      P+VF Y  +++ LCK+  +++ K +  +M D+G        NTL   
Sbjct: 312 MVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAA 365

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +L EA  L   +  +G++P ++T+  L+N  C VG  ++A+ LF+ M   G  PD
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+  C    + +A+++ ++M   G  +             T T N  IDGLCK
Sbjct: 426 EVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR------------STITYNTIIDGLCK 473

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E  E+F  +++         FN+LI G CK    + A EL N++  + L  + + 
Sbjct: 474 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNIT 533

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN ++    K+G IKK   +L +M  NG  +DV T+ TL+
Sbjct: 534 YNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 179/369 (48%), Gaps = 37/369 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN+L+K  C    +R A  ++++M++ G  P+ TT  TL+ G    G++   L++   
Sbjct: 182 VTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKAR 241

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKD----KGINANTL--- 136
           M+  MG        NV     LI+G CK  R+ D    +  E+ D      I  NT    
Sbjct: 242 MLE-MGCSATKVTVNV-----LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNG 295

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+   +  A +++++M+Q G +P +FTY  ++N  C  G++  A  + + M  +G +PD
Sbjct: 296 LCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 355

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
           + +++ LI   C    +EEA++++R++ + G                         ++F 
Sbjct: 356 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 415

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EMK     P+  T N  ID LC  G + + ++L   +E + C      +N++I G CK  
Sbjct: 416 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKM 475

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A E+F+++  + +  + + +N LI  L K+ +I     L+  M   G   +  T+N
Sbjct: 476 RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYN 535

Query: 354 TLMISFLQK 362
           +++  + ++
Sbjct: 536 SILTHYCKQ 544



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 159/344 (46%), Gaps = 27/344 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN+LI   C    + +A  L +++   G  P+V T + LI  L + G+ +L L+L +EM
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL---L 137
            N          P+   Y +LID LC    + +  DL  +M+  G     I  NT+   L
Sbjct: 418 KNSG------CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 471

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CKK ++ EA  + + M  +G++    T+  L++G C   K++ A  L + M  +G  P+ 
Sbjct: 472 CKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNN 531

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ ++  YCK  ++++A ++   M  NGF+         +VV    T    I+GLCK 
Sbjct: 532 ITYNSILTHYCKQGDIKKAADILETMTANGFE--------VDVV----TYGTLINGLCKA 579

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G     +++   + I       + +N +++   +      A  LF +++      D + Y
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTY 639

Query: 318 NILIHALGKEGQIKKENY-LLLSMEENGCALDVDTFNTLMISFL 360
            I+   L + G   KE +  +L M + G   +  +F  L    L
Sbjct: 640 KIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLL 683



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 17/227 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + +T+N++I G C +  I +A ++  +M   G   N  T +TLI GL +   ++   +
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 517

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           L  +M++ G+       +PN   Y S++   CK   + +  D+   M   G   + +   
Sbjct: 518 LINQMISEGL-------QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYG 570

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +   A ++L  M  +G+ P    Y P+L        +  A++LF  MA  
Sbjct: 571 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 630

Query: 192 GFMPDVFSYSVLINGYCKNFN-VEEAMNVSREMILNGFKKIFNEMKL 237
           G  PD  +Y ++  G C+    ++EA +   EM+  GF   F+  ++
Sbjct: 631 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRM 677



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 23/226 (10%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+      Y  LLN      K+ +  +++  M  +G  PDV +++ L+   C+   V  A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 217 MNVSREM--------------ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDG 253
           + +  EM              ++ GF          ++   M          T N+ I+G
Sbjct: 201 VIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK G V + +           E     +N+ + G C+      A ++ + +  +    D
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V  YNI+++ L K GQ+++   +L  M + GC  D+ TFNTL+ + 
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL 366



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 37/206 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A       I    +P N++T+NS++  +C +G+I+ A+ +++ M   G   +V T 
Sbjct: 511 KIDDAFELINQMISEGLQP-NNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTY 569

Query: 63  DTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            TLI GL + G   + LK+ + M + GM       +P    Y  ++  L +   +     
Sbjct: 570 GTLINGLCKAGRTQVALKVLRGMRIKGM-------RPTPKAYNPVLQSLFRRNNIRDALS 622

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL-VGKVNV 180
           LF EM + G   + L                           TY  +  G C   G +  
Sbjct: 623 LFREMAEVGEPPDAL---------------------------TYKIVFRGLCRGGGPIKE 655

Query: 181 AIALFDSMARKGFMPDVFSYSVLING 206
           A      M  KGF+P+  S+ +L  G
Sbjct: 656 AFDFMLEMVDKGFIPEFSSFRMLAEG 681



 Score = 41.2 bits (95), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 40/223 (17%), Positives = 92/223 (41%), Gaps = 11/223 (4%)

Query: 135 TLLCKKTKLVEANRLLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           T L ++     A R+L   + R    P    Y  ++     VG +++   L   M R+G 
Sbjct: 46  TALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGH 105

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
              +     +++ +  ++  ++  + + ++ILN  + +F       +  +T   N  ++ 
Sbjct: 106 QVKLG----VVHSFLDSYEGQQLFDDAVDLILNQLQPLFG------IQADTVVYNHLLNV 155

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           L +   +  +  ++  +     +  V  FN+L++  C+      A  +  ++S + +  D
Sbjct: 156 LVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPD 215

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +  L+    +EG I+    +   M E GC+    T N L+
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLI 258


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 170/356 (47%), Gaps = 37/356 (10%)

Query: 19  YRPLND------VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           YR +ND      +T+  L+ G      +RDA Q++++M +    P+ TT   ++  L   
Sbjct: 28  YRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLG 87

Query: 73  GNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG- 130
             ++   +L +EM++ GM         N   Y +L+DGLCK   +D+   L   M ++G 
Sbjct: 88  DRVDDARELVEEMLHRGMA-------ANAITYSALVDGLCKCERLDEAVALVETMAERGC 140

Query: 131 ----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
               +  N+++   C+  ++ EA+  +E M+  G +P I TYT L+ G+C    V   + 
Sbjct: 141 APTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLE 200

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           L   + R+GF PD+ +YS +I+G CK   + +A++            IF EM   +  P 
Sbjct: 201 LLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVD------------IFEEM---SCAPT 245

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T N  I G C+ G + E + L   +    C   V  + +L+   CK G  + A ELF 
Sbjct: 246 AITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQ 305

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ++    L  DVV +  L+  L  EG+++    LL  +   GC   + T+N ++  +
Sbjct: 306 QMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGY 361



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 158/338 (46%), Gaps = 30/338 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            N +I G C  G +R A  + ++M      P+  T   L+ GL +   +   +++ QEMV
Sbjct: 8   HNVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMV 66

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
           +        + P+      ++  LC    VD  ++L  EM  +G+ AN +        LC
Sbjct: 67  SAR------HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLC 120

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  +L EA  L+E M +RG  P + TY  ++ G+C   +V+ A    + M  +G  PD+ 
Sbjct: 121 KCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDII 180

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y+ LI G+CK+ +V   + +  E+   GF             P+  T +  IDGLCK G
Sbjct: 181 TYTALIGGFCKSRDVGRGLELLGEVTRRGF------------TPDIVTYSTVIDGLCKAG 228

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + + +++F   E  +C      +NSLI G C+ G  + A  L  K+       DVV Y 
Sbjct: 229 RLRDAVDIF---EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYT 285

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            L+ A  K G++     L   M  N  + DV TF +L+
Sbjct: 286 TLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLV 323



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 160/362 (44%), Gaps = 60/362 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NS+I GFC    + +A   +++M   GC P++ T   LI G  ++ ++   L+L  E
Sbjct: 145 VTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGE 204

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK--DKGINANTLL----- 137
           +          + P++  Y ++IDGLCK   +    D+F EM      I  N+L+     
Sbjct: 205 VTRRG------FTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCR 258

Query: 138 ---------------------------------CKKTKLVEANRLLELMMQRGLNPVIFT 164
                                            CK  +L +A  L + M+   L+P + T
Sbjct: 259 AGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVT 318

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           +T L++G C  G++  A+ L + + R+G  P +++Y+ +++GYCK   V +A  +  +  
Sbjct: 319 FTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFR 378

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL--EISNCELFVEIF 282
             GF            VP T T NI + G C+ G   + ++    L  E   C   V ++
Sbjct: 379 SRGF------------VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMY 426

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
             ++   C+ G  + A + + ++  +  V     +  ++ AL K  Q ++ + LL  M +
Sbjct: 427 AIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIK 486

Query: 343 NG 344
            G
Sbjct: 487 YG 488



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 146/311 (46%), Gaps = 30/311 (9%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           P     + +I GL R G +   L ++++M +        + P+   Y  L+ GL K R +
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMNDA-------HPPDFLTYTKLVHGLSKARRL 55

Query: 117 DQTKDLFMEM-KDKGINANTLL-------CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
                +  EM   + +  NT L       C   ++ +A  L+E M+ RG+     TY+ L
Sbjct: 56  RDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSAL 115

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           ++G C   +++ A+AL ++MA +G  P V +Y+ +I G+C+   V+EA     +M+  G 
Sbjct: 116 VDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEG- 174

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                    C+  P+  T    I G CK+  V   +EL   +        +  ++++I G
Sbjct: 175 ---------CH--PDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDG 223

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            CK G    A ++F ++SC       + YN LI    + G + +   LL  M ++ CA D
Sbjct: 224 LCKAGRLRDAVDIFEEMSC---APTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPD 280

Query: 349 VDTFNTLMISF 359
           V T+ TLM +F
Sbjct: 281 VVTYTTLMSAF 291



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 16/211 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF SL+ G C EG + DA +L++++   GC P + T + ++ G  +       ++  +E
Sbjct: 317 VTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQ----VRKAEE 372

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------- 135
           +V      G  + PN   Y  L+ G C+    DQ      ++  +G    T         
Sbjct: 373 LVADFRSRG--FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIIL 430

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +  +A +  E M+QRG  P   T+  ++   C   +   A  L + M + G  
Sbjct: 431 DALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHT 490

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           P   +   +++ YC+   +++A  ++ E+ L
Sbjct: 491 PGPGTCDAVVSAYCRAGMIQKADELASELRL 521



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 13/202 (6%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           +NP    +  ++ G C  G++  A+ ++  M      PD  +Y+ L++G  K   + +A+
Sbjct: 1   MNPGTLLHNVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKARRLRDAV 59

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            V +EM+                VP+  T  + +  LC    V +  EL   +       
Sbjct: 60  QVLQEMVS------------ARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAA 107

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               +++L+ G CK    + A  L   ++ +     VV YN +I    +  ++ + +  +
Sbjct: 108 NAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFM 167

Query: 338 LSMEENGCALDVDTFNTLMISF 359
             M   GC  D+ T+  L+  F
Sbjct: 168 EQMVAEGCHPDIITYTALIGGF 189



 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 12  GSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGL 69
             F  R + P N VT+N L+ G C  G    A Q + ++ + G  C  +V     ++  L
Sbjct: 375 ADFRSRGFVP-NTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDAL 433

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
            R G  +  ++ ++EM+         Y P    + +++  LCK     Q  +L  EM   
Sbjct: 434 CRDGRTDDAVQFYEEMIQRG------YVPAAATFATVVFALCKAHQPQQAHELLEEMIKY 487

Query: 130 GINANTLLC 138
           G       C
Sbjct: 488 GHTPGPGTC 496


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 183/398 (45%), Gaps = 72/398 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+++  FC +G +++A QL+ +M   GC PN  T + L+ GL  +G +    +L QE
Sbjct: 191 VTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQE 250

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M+  +G      + + + Y  LI G C+   +D+   L  EM  +G     +  NT+   
Sbjct: 251 MLR-LG-----LEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYG 304

Query: 137 LCKKTKLVEANRLLELMMQ-----------------------------------RGLNPV 161
           LCK  ++ +A +LL++M+                                    RGL P 
Sbjct: 305 LCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPS 364

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           + TY  L++G C +G ++VA+ L D M + G  PDVF++++L+ G+CK  N+  A  +  
Sbjct: 365 VVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFD 424

Query: 222 EMILNGFK--------KIFNEMKLCN---------------VVPETFTCNIFIDGLCKNG 258
           EM+  G +        +I  E+KL +                 P+  T N+FIDGL K G
Sbjct: 425 EMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLG 484

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           ++ E  EL   +  +        + S+I      G    A  +F ++  K +   VV Y 
Sbjct: 485 NLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYT 544

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +LIH+    G++K        M E G   +V T+N L+
Sbjct: 545 VLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALI 582



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 158/342 (46%), Gaps = 30/342 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+++ G C  G + DA +L+  M      P++ + +TLI G  R GN+     L  E
Sbjct: 296 VTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAE 355

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +      F G+  P+V  Y +LIDGLC+   +D    L  EM   G + +          
Sbjct: 356 L-----RFRGLV-PSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRG 409

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   L  A  L + M+ RGL P  F Y   + G   +G  + A  + + M  +GF PD
Sbjct: 410 FCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPD 469

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+V I+G  K  N++EA  + ++M+ NG            +VP+  T    I     
Sbjct: 470 LITYNVFIDGLHKLGNLKEASELVKKMLYNG------------LVPDHVTYTSIIHAHLM 517

Query: 257 NGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            GH+ +   +F  LE+ +  +F  +  +  LI      G  ++A   F ++  K +  +V
Sbjct: 518 AGHLRKARAVF--LEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNV 575

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + YN LI+ L K  ++ +       M+  G + +  T+  L+
Sbjct: 576 ITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILI 617



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 150/346 (43%), Gaps = 61/346 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N+LI G+   GNI +A  L  ++   G  P+V T +TLI GL R G++++ ++L  E
Sbjct: 331 VSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDE 390

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+    D      P+VF +  L+ G CK   +   K+LF EM ++G+  +          
Sbjct: 391 MIKHGPD------PDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVG 444

Query: 137 -----------------------------------LCKKTKLVEANRLLELMMQRGLNPV 161
                                              L K   L EA+ L++ M+  GL P 
Sbjct: 445 ELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPD 504

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
             TYT +++ + + G +  A A+F  M  KG  P V +Y+VLI+ Y     ++ A     
Sbjct: 505 HVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLA----- 559

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
             IL+ F     EM    V P   T N  I+GLCK   + +  + F  ++          
Sbjct: 560 --ILHFF-----EMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYT 612

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
           +  LI   C  G ++ A  L+  +  + +  D   ++ L+  L K+
Sbjct: 613 YTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHLNKD 658



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 150/321 (46%), Gaps = 25/321 (7%)

Query: 49  KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108
           KM + G  P++  C+ ++  LR   + + ++ + +E+ N M + G   +P V  Y +++D
Sbjct: 144 KMVSKGMLPDLKNCNRVLRLLR---DRDSSIDVAREVYNVMVECG--IRPTVVTYNTMLD 198

Query: 109 GLCKDRLVDQTKDLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNP 160
             CK   V +   L ++M+  G     +  N L   L    +L +A  L++ M++ GL  
Sbjct: 199 SFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEV 258

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
             +TY PL+ GYC  G+++ A  L + M  +G +P + +Y+ ++ G CK   V +A    
Sbjct: 259 SAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDA---- 314

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                   +K+ + M   N++P+  + N  I G  + G++ E   LF  L        V 
Sbjct: 315 --------RKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVV 366

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            +N+LI G C+ G  ++A  L +++       DV  + IL+    K G +     L   M
Sbjct: 367 TYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEM 426

Query: 341 EENGCALDVDTFNTLMISFLQ 361
              G   D   + T ++  L+
Sbjct: 427 LNRGLQPDRFAYITRIVGELK 447



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 14/199 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + +T+N  I G    GN+++AS+LVKKM   G  P+  T  ++I      G++     
Sbjct: 467 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARA 526

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           +  EM++      GI+ P+V  Y  LI        +      F EM +KG++ N +    
Sbjct: 527 VFLEMLSK-----GIF-PSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNA 580

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  K+ +A +    M  +G++P  +TYT L+N  C +G    A+ L+  M  + 
Sbjct: 581 LINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDRE 640

Query: 193 FMPDVFSYSVLINGYCKNF 211
             PD  ++S L+    K++
Sbjct: 641 IQPDSCTHSALLKHLNKDY 659



 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 46/179 (25%)

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           +F  M  KG +PD+           KN N    +   R+  ++  ++++N M  C + P 
Sbjct: 141 VFYKMVSKGMLPDL-----------KNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPT 189

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T N  +D  CK G V E ++L   ++                                
Sbjct: 190 VVTYNTMLDSFCKQGKVQEALQLLLQMQ-------------------------------- 217

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           K+ C   + + V YN+L++ L   G++++   L+  M   G  +   T++ L+  + +K
Sbjct: 218 KMGC---LPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEK 273


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 157/346 (45%), Gaps = 29/346 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF  L++G C    +  A QL+ +M   GC P+    + LI+G  +  +     K   EM
Sbjct: 12  TFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM 71

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           V           P V  Y +++DGLCK         L  EM+DKG + N          L
Sbjct: 72  VKNH------CLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGL 125

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C++ KL EA ++LE M  RG  P + TY   + G C   +V+ A      +AR    PDV
Sbjct: 126 CEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKF---LARMPVTPDV 182

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY+ +ING CK+ +++ A             ++ ++M      P+  T +  IDG CK 
Sbjct: 183 VSYTTVINGLCKSGDLDSA------------SRMLDQMTNRGCTPDVVTYSSLIDGFCKG 230

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V   M L  ++    C   +  +NSL+    + G    A ++  ++  +    DVV+Y
Sbjct: 231 GEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSY 290

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           N  I  L K  ++KK   +   M E GC  +  +++ L+    +K+
Sbjct: 291 NACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKK 336



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 178/397 (44%), Gaps = 73/397 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +++ G C  G  +DA +L+ +M   GC PN+ T + ++ GL     ++   K+ +E
Sbjct: 81  VTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEE 140

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTL---LC 138
           M V G       Y P+V  Y S I GLCK   VD+ +     M +    ++  T+   LC
Sbjct: 141 MAVRG-------YFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLC 193

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS----------- 187
           K   L  A+R+L+ M  RG  P + TY+ L++G+C  G+V  A+ L DS           
Sbjct: 194 KSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMV 253

Query: 188 ------------------------MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
                                   M R+GF PDV SY+  I+G CK   V++A  V   M
Sbjct: 254 AYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRM 313

Query: 224 ILNGF-----------------KKIFNEMKLCNVVPETFTC------NIFIDGLCKNGHV 260
           +  G                  K++ + + L     E +         + +DGLCK G  
Sbjct: 314 VERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRF 373

Query: 261 LEVMELFP-TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
            E   LF   L+   CE  V  +N ++   CK    + A ++  ++  +N   +VV +NI
Sbjct: 374 DEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERN-CCNVVTWNI 432

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L+H L  + ++     +LL+M + G   D  T+ TL+
Sbjct: 433 LVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLV 469



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 133/268 (49%), Gaps = 23/268 (8%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANR 148
           +P+ F +  L+ GLC+   +++ + L   MK+ G   +  +         K     +A +
Sbjct: 7   QPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFK 66

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
            L  M++    P + TYT +++G C  G+   A+ L D M  KG  P++++Y+V++ G C
Sbjct: 67  FLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLC 126

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           +   ++EA            KK+  EM +    P+  T N FI GLCK   V E  +   
Sbjct: 127 EERKLDEA------------KKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLA 174

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            + ++     V  + ++I G CK G  + AS + ++++ +    DVV Y+ LI    K G
Sbjct: 175 RMPVTP---DVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGG 231

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++++   LL SM + GC  ++  +N+L+
Sbjct: 232 EVERAMGLLDSMLKLGCRPNMVAYNSLL 259



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 148/365 (40%), Gaps = 58/365 (15%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           RR + P + V++N+ I G C    ++ A  +  +M   GC PN ++   L+  L +   +
Sbjct: 280 RRGFTP-DVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKEL 338

Query: 76  NLTLKLHQE---------------MVNGMGDFG---------------GIYKPNVFCYGS 105
           +  + L ++               +++G+   G                I +P+VF Y  
Sbjct: 339 DDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNV 398

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKG----INANTL---LCKKTKLVEANRLLELMMQRGL 158
           ++D  CK R +D+   +  +M ++     +  N L   LC   +L +A  +L  M+  G 
Sbjct: 399 MLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGF 458

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P   TY  L++  C  GK   A+ LF+   + G +PDV +YS LI G       EEA  
Sbjct: 459 IPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYL 518

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           +        F K+           +    N  I G  +NG     ++LF  L  S+ E  
Sbjct: 519 L--------FTKL-----------DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPN 559

Query: 279 VEIFNSLIRG-CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
              F   I G   K      A  LF++        D+   N LI    K G +++   + 
Sbjct: 560 ARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIF 619

Query: 338 LSMEE 342
            SM++
Sbjct: 620 YSMKQ 624



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 26/230 (11%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+ +   P  FT+  LL G C   ++  A  L   M   G +PD   Y+ LI+GY K  +
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 213 VEEAMNVSREMILN-----------------------GFKKIFNEMKLCNVVPETFTCNI 249
             +A     EM+ N                          K+ +EM+     P  +T N+
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            ++GLC+   + E  ++   + +      V  +NS I+G CK    + A +   ++    
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP--- 177

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +  DVV+Y  +I+ L K G +   + +L  M   GC  DV T+++L+  F
Sbjct: 178 VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGF 227


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 179/408 (43%), Gaps = 85/408 (20%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ- 83
           +TFN++I G C  G + +A ++  KM   GC P+  T  TLI G  +  N+    K+   
Sbjct: 508 ITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 567

Query: 84  ----------EMVNGMGDFGGIYK--------------------PNVFCYGSLIDGLCKD 113
                     EM N +    G++K                    PN+  YG+LIDG CK+
Sbjct: 568 MEREPISPSIEMYNSL--ISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKE 625

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKT--------KLVEANRLLELMMQRG-------- 157
            ++D+    + EM + G++AN ++C           ++ EAN L++ M+  G        
Sbjct: 626 GMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF 685

Query: 158 ------------------------LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                                   L P    Y   + G C  GKV+ A   F  ++ KGF
Sbjct: 686 LKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGF 745

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PD F+Y  LI+GY    NV+EA  +  EM+  G            +VP   T N  I+G
Sbjct: 746 VPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRG------------LVPNIVTYNALING 793

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK+ +V     LF  L        V  +N+LI G CK G  + A +L +K+  + +   
Sbjct: 794 LCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPS 853

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           VV Y+ LI+ L K G I++   LL  M + G    +  + TL+  +++
Sbjct: 854 VVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIR 901



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 166/359 (46%), Gaps = 38/359 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCR-PNVTTCDTLITGLRRTGNMNLTLKL 81
           N VT+  LIKG+C +  + +A ++++ M       P+      LI G  RTG ++  ++L
Sbjct: 295 NVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRL 354

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL 136
             EM+  +G      K N+F   SLI+G CK   + + + +   M D  +       NTL
Sbjct: 355 LDEMLR-LG-----LKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 408

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   C++    EA  L + M+Q G+ P + TY  LL G C VG  + A+ ++  M ++G 
Sbjct: 409 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGV 468

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK----------------------- 230
            PD   YS L++G  K  N E A  + ++++  GF K                       
Sbjct: 469 APDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEE 528

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           IF++MK     P+  T    IDG CK  +V +  ++   +E       +E++NSLI G  
Sbjct: 529 IFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLF 588

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           K       ++L  ++  + L  ++V Y  LI    KEG + K       M ENG + ++
Sbjct: 589 KSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANI 647



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 33/342 (9%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           ++  FC +G + +A+  VKKM   G  PN+ T  +LI G    G++        E   G+
Sbjct: 232 MVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDV--------EAAKGV 283

Query: 90  GDF---GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLL---- 137
             F    G+ + NV  Y  LI G CK   +D+ + +   M+++        A  +L    
Sbjct: 284 LKFMSEKGVSR-NVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGY 342

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+  K+ +A RLL+ M++ GL   +F    L+NGYC  G+++ A  +   M      PD 
Sbjct: 343 CRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDS 402

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           +SY+ L++GYC+  +  EA N+  +M+  G +            P   T N  + GLC+ 
Sbjct: 403 YSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE------------PTVLTYNTLLKGLCRV 450

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G   + ++++  +           +++L+ G  K   FE AS L+  +  +      + +
Sbjct: 451 GAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITF 510

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N +I  L K G++ +   +   M++ GC+ D  T+ TL+  +
Sbjct: 511 NTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGY 552



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 171/374 (45%), Gaps = 51/374 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ ++K +  +G  ++A  +   M   G  P++ +C++L+  L + G  +    ++Q+M+
Sbjct: 159 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 218

Query: 87  N---------------------GMGDFGGIYK--------PNVFCYGSLIDGLCKDRLVD 117
                                  + +  G  K        PN+  Y SLI+G      V+
Sbjct: 219 RVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVE 278

Query: 118 QTKDLFMEMKDKGINAN----TLL----CKKTKLVEANRLLELMMQR-GLNPVIFTYTPL 168
             K +   M +KG++ N    TLL    CK+ K+ EA ++L  M +   L P    Y  L
Sbjct: 279 AAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVL 338

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           ++GYC  GK++ A+ L D M R G   ++F  + LINGYCK   + EA  V   M+    
Sbjct: 339 IDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMV---- 394

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                     N+ P++++ N  +DG C+ GH  E   L   +     E  V  +N+L++G
Sbjct: 395 --------DWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKG 446

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C+ G F+ A ++++ +  + +  D V Y+ L+  L K    +  + L   +   G    
Sbjct: 447 LCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKS 506

Query: 349 VDTFNTLMISFLQK 362
             TFNT MIS L K
Sbjct: 507 RITFNT-MISGLCK 519



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 154/315 (48%), Gaps = 23/315 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI G+C EG +  A     +M   G   N+  C T+++GL R G ++    L 
Sbjct: 611 NIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLM 670

Query: 83  QEMVNGMGDFGGIYKPNVFCY-GSLIDGLCKDRLVDQTKD---LFMEMKDKGIN-ANTLL 137
           Q+MV    D G  + P+  C+  S I      ++ D   +    F+   +   N A   L
Sbjct: 671 QKMV----DHG--FFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGL 724

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  K+ +A R   ++  +G  P  FTY  L++GY   G V+ A  L D M R+G +P++
Sbjct: 725 CKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNI 784

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LING CK+ NV+ A            +++F+++    + P   T N  IDG CK 
Sbjct: 785 VTYNALINGLCKSENVDRA------------QRLFHKLHQKGLFPNVVTYNTLIDGYCKI 832

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G++    +L   +        V  +++LI G CK G  E + +L N++    + + ++ Y
Sbjct: 833 GNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEY 892

Query: 318 NILIHALGKEGQIKK 332
             L+    + G+++K
Sbjct: 893 CTLVQGYIRSGEMQK 907



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 167/417 (40%), Gaps = 95/417 (22%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL- 81
           +  ++N+L+ G+C EG+  +A  L  KM   G  P V T +TL+ GL R G  +  L++ 
Sbjct: 401 DSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIW 460

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           H  M  G+        P+   Y +L+DGL K    +    L+ ++  +G     I  NT+
Sbjct: 461 HLMMKRGVA-------PDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTM 513

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR--- 190
              LCK  K+VEA  + + M   G +P   TY  L++GYC    V  A  +  +M R   
Sbjct: 514 ISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPI 573

Query: 191 --------------------------------KGFMPDVFSYSVLINGYCKNFNVEEAMN 218
                                           +G  P++ +Y  LI+G+CK   +++A +
Sbjct: 574 SPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFS 633

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL---------FPT 269
              EM  NG           N++     C+  + GL + G + E   L         FP 
Sbjct: 634 SYFEMTENGLS--------ANII----ICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD 681

Query: 270 LEI-------------------SNCELFVE----IFNSLIRGCCKFGIFEIASELFNKLS 306
            E                     +C+ F+     ++N  I G CK G  + A   F+ LS
Sbjct: 682 HECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLS 741

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            K  V D   Y  LIH     G + +   L   M   G   ++ T+N L+    + E
Sbjct: 742 LKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSE 798



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 116/250 (46%), Gaps = 45/250 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N++ +N  I G C  G + DA +    ++  G  P+  T  TLI G    GN++   +L 
Sbjct: 713 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLR 772

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            EM+       G+  PN+  Y +LI+GLCK   VD+                        
Sbjct: 773 DEMLRR-----GLV-PNIVTYNALINGLCKSENVDR------------------------ 802

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
              A RL   + Q+GL P + TY  L++GYC +G ++ A  L D M  +G  P V +YS 
Sbjct: 803 ---AQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSA 859

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LING CK+ ++E +M +  +MI  G       ++ C +V           G  ++G + +
Sbjct: 860 LINGLCKHGDIERSMKLLNQMIKAGVDSKL--IEYCTLV----------QGYIRSGEMQK 907

Query: 263 VMELFPTLEI 272
           + +L+  + I
Sbjct: 908 IHKLYDMMHI 917



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 24/252 (9%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL--VEANRLLELM 153
           ++PNV  Y  L+  L + R+ D+T+    ++ D        LCK      V  + L+ + 
Sbjct: 98  FRPNVKSYCKLVHILSRGRMYDETRAYLNQLVD--------LCKFKDRGNVIWDELVGVY 149

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
            +   +P +F    +L  Y   G    A+ +FD+M + G +P + S + L+N   KN   
Sbjct: 150 REFAFSPTVFDM--ILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGET 207

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
             A  V ++MI  G            +VP+ F  +I ++  CK+G V E       +E  
Sbjct: 208 HTAHYVYQQMIRVG------------IVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENL 255

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             E  +  ++SLI G    G  E A  +   +S K +  +VV Y +LI    K+ ++ + 
Sbjct: 256 GVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 315

Query: 334 NYLLLSMEENGC 345
             +L  M+E   
Sbjct: 316 EKVLRGMQEEAA 327


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 172/345 (49%), Gaps = 30/345 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            T++ LI+ +   G+I +A ++ ++M       +V    ++I+  RR GNM     L  E
Sbjct: 288 ATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDE 347

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M     D      PN   YG+LI G+CK   ++  + L +EM+ KG++ N ++       
Sbjct: 348 M--SQRDI----VPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDG 401

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C++ K+ EA RL  +M ++G+N  +FTY  L NG C + + + A  + +SM  KG  P+
Sbjct: 402 YCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPN 461

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V ++++ I  YCK  N+ EA            +++F +M+    VP   T N  ID  CK
Sbjct: 462 VVTFTMFIEIYCKEGNLAEA------------ERLFRDMEKKGEVPNIITYNTLIDAYCK 509

Query: 257 NGHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
              V +  ++    E+ N  L  +++  +SLI G C  G  + A +LFN++  K +  +V
Sbjct: 510 KEKVKQAHKI--KSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNV 567

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             Y  +I  L KEG+  +   L   M + G   D   F +L+ SF
Sbjct: 568 ATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSF 612



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 131/280 (46%), Gaps = 29/280 (10%)

Query: 2   SKVLGAL-MAFGSFIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN 58
           S+ LG +  AF  F     R +  N  T+ +LI G C  G +  A  L+ +M + G   N
Sbjct: 332 SRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLN 391

Query: 59  VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ 118
           +   +T + G  R G M+  L+L   M     +  GI   +VF Y  L +GLCK    D+
Sbjct: 392 LVIFNTTMDGYCRRGKMDEALRLQAIM-----EKKGI-NADVFTYNILANGLCKLHRYDE 445

Query: 119 TKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
            K +   M +KG+  N         + CK+  L EA RL   M ++G  P I TY  L++
Sbjct: 446 AKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLID 505

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
            YC   KV  A  +   M  KG +PD+++YS LI+G C    V+EA+            K
Sbjct: 506 AYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEAL------------K 553

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
           +FNEM+L  +     T    I GL K G   E  +L+  +
Sbjct: 554 LFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEM 593



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 24/220 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V FN+ + G+C  G + +A +L   M   G   +V T + L  GL          KL
Sbjct: 390 LNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGL---------CKL 440

Query: 82  HQE-----MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----I 131
           H+      ++N M + G   KPNV  +   I+  CK+  + + + LF +M+ KG     I
Sbjct: 441 HRYDEAKCILNSMVEKG--VKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNII 498

Query: 132 NANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
             NTL+   CKK K+ +A+++   M+ +GL P ++TY+ L++G C+VG+V+ A+ LF+ M
Sbjct: 499 TYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEM 558

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
             KG   +V +Y+ +I+G  K    +EA  +  EM+  G 
Sbjct: 559 RLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGL 598



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 143/315 (45%), Gaps = 27/315 (8%)

Query: 58  NVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC--KDRL 115
            V +   +I  L R G +    +L  EMV       GI KPNVF Y +L++     KDR 
Sbjct: 215 RVQSLTLVIDVLCRRGEVEKAKELMDEMVGK-----GIVKPNVFTYNTLLNAYVGRKDRK 269

Query: 116 -VDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            VD+   L ME +    +  T             + EA ++ E M ++ +   ++ Y+ +
Sbjct: 270 GVDEILKL-MEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSM 328

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           ++    +G +  A ALFD M+++  +P+  +Y  LI G CK   +E A  +  EM   G 
Sbjct: 329 ISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGV 388

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                     N+V      N  +DG C+ G + E + L   +E       V  +N L  G
Sbjct: 389 D--------LNLV----IFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANG 436

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            CK   ++ A  + N +  K +  +VV + + I    KEG + +   L   ME+ G   +
Sbjct: 437 LCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPN 496

Query: 349 VDTFNTLMISFLQKE 363
           + T+NTL+ ++ +KE
Sbjct: 497 IITYNTLIDAYCKKE 511



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 22/222 (9%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM-PDVFSY 200
           ++VE+N+  E+ +Q        + T +++  C  G+V  A  L D M  KG + P+VF+Y
Sbjct: 205 RMVESNKF-EIRVQ--------SLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTY 255

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + L+N Y    + +            G  +I   M+   VV    T +I I     +G +
Sbjct: 256 NTLLNAYVGRKDRK------------GVDEILKLMEKEQVVFSVATYSILIQWYSSSGDI 303

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            E  ++F  +   N E+ V +++S+I    + G  + A  LF+++S +++V +   Y  L
Sbjct: 304 EEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGAL 363

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           I  + K GQ++    LLL M+  G  L++  FNT M  + ++
Sbjct: 364 IGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRR 405


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 172/356 (48%), Gaps = 35/356 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI G+  +GN+ +A++L+  M   GC P+  T + L++G  + G +       QE
Sbjct: 444 VTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQE 503

Query: 85  MVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           MV  G+        PN   Y +LIDG  KD  VD    L   M++ G N N         
Sbjct: 504 MVECGLN-------PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVIN 556

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            L K+ +  EA ++ + M+++GL P + TYT L++G C  G+   A  +F  M ++  +P
Sbjct: 557 GLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLP 616

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSR---EMILNGF----------------KKIFNEMK 236
           ++++YS LI G C+    +EA  +S    E  L+ +                +++  +MK
Sbjct: 617 NLYTYSSLIYGLCQEGKADEAERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMK 676

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
                P+       +   CKN  V   +++F ++E    +L + I+ +LI   CK G  E
Sbjct: 677 ERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVE 736

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
            A  LF+ +  K   AD + + +L+  L KEG++     LL  ME      ++ T+
Sbjct: 737 EAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTY 792



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 174/399 (43%), Gaps = 63/399 (15%)

Query: 9   MAFGSFIRRCYR--PLNDVTFNSLIKGFCMEGNIRDA----------------------- 43
           +AFG F R        N VT+++LI G C EG + +A                       
Sbjct: 251 LAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPI 310

Query: 44  ------------SQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGD 91
                        +LV +M   GCRPNV T   LI+GL R G + + + L+ +M+     
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKE--- 367

Query: 92  FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKL 143
             G+  PN   Y +LI+ LC          +F  M+  G  ANT         LC    +
Sbjct: 368 --GLV-PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDI 424

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            +A  L E M++ G  P + TY  L+NGY   G VN A  L D M   G  PD ++Y+ L
Sbjct: 425 EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 484

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           ++G+ K   +E A               F EM  C + P   +    IDG  K+G V   
Sbjct: 485 VSGFSKWGKLESA------------SFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIA 532

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           + L   +E   C   VE +N++I G  K   F  A ++ +K+  + L+ +V+ Y  LI  
Sbjct: 533 LSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDG 592

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           L + G+ +    +   ME+  C  ++ T+++L+    Q+
Sbjct: 593 LCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQE 631



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 158/328 (48%), Gaps = 26/328 (7%)

Query: 40  IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99
           +  A  L K+M   G +P++ T +TLI  L + G +     +  ++      F     P+
Sbjct: 179 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI------FQYDLSPD 232

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           VF Y SLI G C++R +D    +F  M  +G + N++        LC + ++ EA  +LE
Sbjct: 233 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLE 292

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            M+++G+ P ++TYT  +   C +     AI L   M ++G  P+V +Y+ LI+G  +  
Sbjct: 293 EMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLG 352

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            +E A+ +  +M+  G            +VP T T N  I+ LC  G     +++F  +E
Sbjct: 353 KLEVAIGLYHKMLKEG------------LVPNTVTYNALINELCVGGRFSTALKIFHWME 400

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
                   + +N +I+G C  G  E A  LF K+     +  VV YN LI+    +G + 
Sbjct: 401 GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVN 460

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
               LL  M+ENGC  D  T+N L+  F
Sbjct: 461 NAARLLDLMKENGCEPDEWTYNELVSGF 488



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 141/279 (50%), Gaps = 25/279 (8%)

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL---L 137
           ++GMG    +Y  N     +L+  L K  +V+  ++L+ +M + GI       NTL   L
Sbjct: 154 ISGMGFGFSLYSCN-----TLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINIL 208

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            KK K+ EA  +L  + Q  L+P +FTYT L+ G+C    +++A  +FD M ++G  P+ 
Sbjct: 209 SKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNS 268

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +YS LING C    V+EA+++  EMI  G +            P  +T  + I  LC  
Sbjct: 269 VTYSTLINGLCNEGRVDEALDMLEEMIEKGIE------------PTVYTYTLPITALCAI 316

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
            H  E +EL   ++   C   V+ + +LI G  + G  E+A  L++K+  + LV + V Y
Sbjct: 317 EHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTY 376

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N LI+ L   G+      +   ME +G   +  T+N ++
Sbjct: 377 NALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEII 415



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 136/314 (43%), Gaps = 41/314 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++ +LI G   +G +  A  L+K+M   GC PNV + + +I GL +    +   K+ 
Sbjct: 512 NPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKIC 571

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +MV       G+  PNV  Y +LIDGLC++        +F +M+ +    N        
Sbjct: 572 DKMVEQ-----GLL-PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLI 625

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ K  EA R+ E+    G  P + TY+ L++G C  G+   A  L   M  +GF 
Sbjct: 626 YGLCQEGKADEAERMSEI----GCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFC 681

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PD   Y  L+  +CKN  V+ A+ +   +   GF+                        +
Sbjct: 682 PDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQAL 741

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F+ M       +     + +DGL K G +   M+L   +E  N    ++ +  L R   +
Sbjct: 742 FDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSR 801

Query: 292 FGIFEIASELFNKL 305
            G    +  L +KL
Sbjct: 802 IGKSIESEPLADKL 815


>gi|302756087|ref|XP_002961467.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
 gi|300170126|gb|EFJ36727.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
          Length = 500

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 177/370 (47%), Gaps = 40/370 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N   F SLI        + DA++ ++ M   G  P+V T   LI G  +   +    +
Sbjct: 8   PPNQHAFASLIDALSKSNRLGDAARALELMCDAGIHPDVVTFTALIRGFCKNRMVERAWE 67

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-DKGINANTL--- 136
           + QEM+          +P+ F YG LIDG CK+  +D+  +L  EM+ ++ I  + +   
Sbjct: 68  IFQEMIKS-----NRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYN 122

Query: 137 -----LCKKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                LC+  + +EA + L E M+++G +P + TYT L+ G C   K+ +A+ ++++M  
Sbjct: 123 SIVDGLCRSNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLE 182

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK------ 230
           +   P + SYSV+I+G  K   V +A  V REM              +++G  K      
Sbjct: 183 RKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDD 242

Query: 231 ---IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
              ++  MK     P   T    ID  C+N      + LF  +    C L V ++ +++ 
Sbjct: 243 AYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIR-DYCPLDVAMYTAVVS 301

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM-EENGCA 346
           G C+    + A  LF ++    + AD  AYN+L+H   + G+ ++   +L  + ++ GC 
Sbjct: 302 GLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSGRSEEAFRILEELGDDPGCV 361

Query: 347 LDVDTFNTLM 356
            ++ T+NT++
Sbjct: 362 ANLLTYNTVI 371



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 40/265 (15%)

Query: 94  GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELM 153
           G   PN   + SLID                            L K  +L +A R LELM
Sbjct: 5   GTPPPNQHAFASLIDA---------------------------LSKSNRLGDAARALELM 37

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF-MPDVFSYSVLINGYCKNFN 212
              G++P + T+T L+ G+C    V  A  +F  M +     PD F Y VLI+GYCK   
Sbjct: 38  CDAGIHPDVVTFTALIRGFCKNRMVERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELR 97

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME-LFPTLE 271
           ++ A+ + REM +              + P+    N  +DGLC++   LE  + L  T+ 
Sbjct: 98  MDRALELLREMRVER-----------RIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMV 146

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
              C   V  + SLIRG CK    ++A  ++N +  + +   +V+Y+++I  L K G++ 
Sbjct: 147 RQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLERKIQPTIVSYSVIIDGLSKAGRVY 206

Query: 332 KENYLLLSMEENGCALDVDTFNTLM 356
               ++  ME  GC L+V  + TL+
Sbjct: 207 DAYRVVREMETLGCELNVVIYTTLI 231



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 118/260 (45%), Gaps = 42/260 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  + + + R  +P   V+++ +I G    G + DA ++V++M T GC  NV    TLI
Sbjct: 173 AMTIWNAMLERKIQP-TIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLI 231

Query: 67  TGLRRTGNMNLTLKLHQ---------------------------EMVNGMGDFGGIYKP- 98
            GL ++G ++    L++                           E   G+ D    Y P 
Sbjct: 232 DGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIRDYCPL 291

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--------KKTKLVEANRLL 150
           +V  Y +++ GLC++R +D  + LF EM+  G++A+T           +  +  EA R+L
Sbjct: 292 DVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSGRSEEAFRIL 351

Query: 151 E-LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           E L    G    + TY  ++ G CL       + LF  M ++G  PD  +YS LI+    
Sbjct: 352 EELGDDPGCVANLLTYNTVIAGCCL----ESGMVLFYEMRQRGIAPDFATYSALIDRLLG 407

Query: 210 NFNVEEAMNVSREMILNGFK 229
           +  +  A ++  EM+ +G  
Sbjct: 408 SGEIRRAFDLCEEMLASGLS 427



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 36/179 (20%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R Y PL+   + +++ G C E  + DA  L ++M   G   +    + L+ G  R+G   
Sbjct: 286 RDYCPLDVAMYTAVVSGLCRERRLDDARALFREMRLAGVSADTHAYNVLLHGAFRSGRSE 345

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              ++ +E    +GD  G    N+  Y ++I G C    ++    LF EM+         
Sbjct: 346 EAFRILEE----LGDDPGCVA-NLLTYNTVIAGCC----LESGMVLFYEMR--------- 387

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
                             QRG+ P   TY+ L++     G++  A  L + M   G  P
Sbjct: 388 ------------------QRGIAPDFATYSALIDRLLGSGEIRRAFDLCEEMLASGLSP 428


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 178/366 (48%), Gaps = 28/366 (7%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
            A+   G  I +  +P + VT+N LI G C     ++A   + K+   G  P+  T +TL
Sbjct: 269 AAVRMVGRLIDQGPKP-DVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTL 327

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I G  + G + L  ++   +VN +  F G + P+ F Y SLIDGLC +   ++   LF E
Sbjct: 328 IAGYCKGGMVQLAERI---LVNAV--FNG-FVPDEFTYRSLIDGLCHEGETNRALALFNE 381

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
              KGI  N +        L  +  ++EA +L   M ++GL P + T+  L+NG C +G 
Sbjct: 382 ALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGC 441

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           V+ A  L   M  KG+ PD+F++++LI+GY     +E A+ +   M+ NG          
Sbjct: 442 VSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNG---------- 491

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             V P+ +T N  ++GLCK     +VME + T+    C   +  FN L+   C++   + 
Sbjct: 492 --VDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDK 549

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE-NGCALDVDTFNTLM 356
           A  L  ++  K++  D V +  LI    K G +     L   MEE    +    T+N ++
Sbjct: 550 ALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIII 609

Query: 357 ISFLQK 362
            +F +K
Sbjct: 610 HAFTEK 615



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 168/367 (45%), Gaps = 28/367 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK   A +  G  +     P +  T+N+LI G+C  G ++ A +++      G  P+  T
Sbjct: 300 SKFQEAEVYLGKLVNEGLEP-DSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFT 358

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             +LI GL   G  N  L L  E +      G   KPNV  Y +LI GL    L+ +   
Sbjct: 359 YRSLIDGLCHEGETNRALALFNEAL------GKGIKPNVILYNTLIKGLSNQGLILEAAQ 412

Query: 122 LFMEMKDKGI-----NANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  EM +KG+       N L   LCK   + +A+ L+++M+ +G  P IFT+  L++GY 
Sbjct: 413 LASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYS 472

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
              K+  A+ + D M   G  PDV++Y+ L+NG CK    E+ M   + M+  G      
Sbjct: 473 TQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKG------ 526

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P  FT NI ++ LC+   + + + L   ++  +       F +LI G CK G
Sbjct: 527 ------CAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNG 580

Query: 294 IFEIASELFNKLSCKNLVA-DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             + A  LF K+    +V+     YNI+IHA  ++  +     L   M +     D  T+
Sbjct: 581 DLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTY 640

Query: 353 NTLMISF 359
             ++  F
Sbjct: 641 RLMVDGF 647



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 163/340 (47%), Gaps = 28/340 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N+++      G    A ++  +M   G  P+V +    +    RT   +  L+L    
Sbjct: 113 SYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRL---- 168

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
           +N M   G   + NV  Y +++ G  ++   D+  +LF +M   G++      N LL   
Sbjct: 169 LNNMSSQGC--EMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVL 226

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CKK  + E  +LL+ +++RG+ P +FTY   + G C  G+++ A+ +   +  +G  PDV
Sbjct: 227 CKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDV 286

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LI G CKN   +EA     E+ L    K+ NE     + P++FT N  I G CK 
Sbjct: 287 VTYNYLIYGLCKNSKFQEA-----EVYLG---KLVNE----GLEPDSFTYNTLIAGYCKG 334

Query: 258 GHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           G V ++ E      + N  +  E  + SLI G C  G    A  LFN+   K +  +V+ 
Sbjct: 335 GMV-QLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVIL 393

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN LI  L  +G I +   L   M E G   +V TFN L+
Sbjct: 394 YNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILV 433



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 119/282 (42%), Gaps = 62/282 (21%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN L+ G C  G + DA  LVK M + G  P++ T + LI G      M   L++   M
Sbjct: 428 TFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM 487

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           ++   D      P+V+ Y SL++GLCK    +   + +  M +KG   N          L
Sbjct: 488 MDNGVD------PDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESL 541

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG--------------------- 176
           C+  KL +A  LLE M  + +NP   T+  L++G+C  G                     
Sbjct: 542 CRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCS 601

Query: 177 -------------KVNVAIA--LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
                        K+NV +A  LF  M  +   PD ++Y ++++G+CK  NV+       
Sbjct: 602 TPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLL 661

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           EM+ NGF            +P   T    I+ LC    V E 
Sbjct: 662 EMMENGF------------IPSLTTLGRVINCLCVEDRVYEA 691



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 15/212 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NSL+ G C      D  +  K M   GC PN+ T + L+  L R   ++  L L +EM
Sbjct: 498 TYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEM 557

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD------KGINANTLL-- 137
            N          P+   +G+LIDG CK+  +D    LF +M++           N ++  
Sbjct: 558 KNKS------VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHA 611

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             +K  +  A +L + M+ R L P  +TY  +++G+C  G V++       M   GF+P 
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPS 671

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           + +   +IN  C    V EA  +   M+  G 
Sbjct: 672 LTTLGRVINCLCVEDRVYEAAGIIHRMVQKGL 703



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 111/263 (42%), Gaps = 39/263 (14%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQR 156
           +P VF Y +++  L      DQ   ++M M+D                           R
Sbjct: 108 EPTVFSYNAIMSILVDSGYFDQAHKVYMRMRD---------------------------R 140

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+ P ++++T  +  +C   + + A+ L ++M+ +G   +V +Y  ++ G+ +    +E 
Sbjct: 141 GITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEG 200

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
             +  +M+ +G       + LC       T N  +  LCK G V E  +L   +      
Sbjct: 201 YELFGKMLASG-------VSLC-----LSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVL 248

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             +  +N  I+G C+ G  + A  +  +L  +    DVV YN LI+ L K  + ++    
Sbjct: 249 PNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVY 308

Query: 337 LLSMEENGCALDVDTFNTLMISF 359
           L  +   G   D  T+NTL+  +
Sbjct: 309 LGKLVNEGLEPDSFTYNTLIAGY 331



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 85/198 (42%), Gaps = 12/198 (6%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y   +  Y   GKV  A+ +F+ M      P VFSY+ +++    +   ++A        
Sbjct: 79  YVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQA-------- 130

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                K++  M+   + P+ ++  I +   C+       + L   +    CE+ V  + +
Sbjct: 131 ----HKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCT 186

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           ++ G  +    +   ELF K+    +   +  +N L+H L K+G +K+   LL  + + G
Sbjct: 187 VVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRG 246

Query: 345 CALDVDTFNTLMISFLQK 362
              ++ T+N  +    QK
Sbjct: 247 VLPNLFTYNFFIQGLCQK 264


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 118 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 177

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+  P+V+ Y  LI+GLCK+         
Sbjct: 178 NTLMNGYIRLGHLDEGFRLKSAMLAS-----GVL-PDVYTYSVLINGLCKE--------- 222

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V+ A+
Sbjct: 223 ------------------SKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAM 264

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 265 EIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK------------P 312

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           + FT    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 313 DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKML 372

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ NG A  V T+N LM
Sbjct: 373 REMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 426



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 158/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 72  FSGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 131

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 132 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 185

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 186 RLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGV 245

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + + M+              +++P+  T N  I GLCK G
Sbjct: 246 TFTTLIDGHCKNGRVDFAMEIYKRMLSQ------------SLLPDLITYNTLIYGLCKKG 293

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 294 DLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYA 353

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 354 ALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 397



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 243 NGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGD----LKQA 298

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++++ M   G   KP+ F Y +LIDG CK+  +D   +    M  + I  + +      
Sbjct: 299 HDLIDEMSMKG--LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALI 356

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G  
Sbjct: 357 SGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHA 416

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 417 PSVVTYNVLMNG 428


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 178/372 (47%), Gaps = 31/372 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  AL   G  ++  + P + VTF SL+ GFC    I++A  LV ++   G  PNV  
Sbjct: 122 SRLSLALSCLGKMMKLGFEP-SIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVI 180

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +T+I  L     ++  L    +++N M   G   +P+V  Y SLI  L        +  
Sbjct: 181 YNTIIDSLCENRQVDTAL----DVLNHMEKMG--IRPDVITYNSLITRLFHSGKWGVSAR 234

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           +  +M   GI+ + +          K+ +L+EA +  + M+QR ++P I TY  L+NG C
Sbjct: 235 ILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLC 294

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
           + G ++ A  + + M  KGF P+  +Y+ L+NGYCK+  V++AM            KI  
Sbjct: 295 IHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAM------------KILC 342

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCK 291
            M    V  +TFT N    G C+ G      ++     + +C +  +I  FN L+ G C+
Sbjct: 343 VMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLA--RMVSCGVLPDIYTFNMLLDGLCE 400

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A      L     V  ++ YNI+I  + K  +++   YL  S+   G + DV T
Sbjct: 401 HGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVIT 460

Query: 352 FNTLMISFLQKE 363
           + T+MI   +K 
Sbjct: 461 YTTMMIGLRRKR 472



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 166/339 (48%), Gaps = 26/339 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +F++LI  FC    +  A   + KM   G  P++ T  +L+ G      +   + L  ++
Sbjct: 110 SFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQI 169

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
           V G+G     Y+PNV  Y ++ID LC++R VD   D+   M+  GI  +        T L
Sbjct: 170 V-GLG-----YEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRL 223

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
               K   + R+L  MM+ G++P + T++ +++ +   G++  A   +D M ++   P++
Sbjct: 224 FHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNI 283

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LING C +  ++EA  V   M+  GF             P   T N  ++G CK+
Sbjct: 284 VTYNSLINGLCIHGLLDEAKKVLNFMVSKGF------------FPNAVTYNTLVNGYCKS 331

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V + M++   +     +     +N+L +G C+ G F  A ++  ++    ++ D+  +
Sbjct: 332 KRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTF 391

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N+L+  L + G+I+K    L  ++++   + + T+N ++
Sbjct: 392 NMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIII 430



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 135/295 (45%), Gaps = 31/295 (10%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL---CKKTKLVEANRL 149
           P++  +  L+  + K +  +    LF  ++  GI+ +     TL+   C+ ++L  A   
Sbjct: 71  PSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLIDCFCRCSRLSLALSC 130

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  MM+ G  P I T+  L+NG+C V ++  A++L D +   G+ P+V  Y+ +I+  C+
Sbjct: 131 LGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 190

Query: 210 NFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFT 246
           N  V+ A++V   M   G +                       +I ++M    + P+  T
Sbjct: 191 NRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVIT 250

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            +  ID   K G +LE  + +  +   + +  +  +NSLI G C  G+ + A ++ N + 
Sbjct: 251 FSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMV 310

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            K    + V YN L++   K  ++     +L  M  +G   D  T+NTL   + Q
Sbjct: 311 SKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQ 365



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 15/229 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++L A   +   I+R   P N VT+NSLI G C+ G + +A +++  M + G  PN  T 
Sbjct: 263 QLLEAKKQYDEMIQRSVDP-NIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTY 321

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  ++  ++  +K+   M +   D       + F Y +L  G C+    +  + +
Sbjct: 322 NTLVNGYCKSKRVDDAMKILCVMSHDGVD------GDTFTYNTLYQGYCQAGQFNAAEKV 375

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
              M   G+  +          LC+  K+ +A   LE + +      I TY  ++ G C 
Sbjct: 376 LARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCK 435

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
             KV  A  LF S+A KG  PDV +Y+ ++ G  +     EA  + R+M
Sbjct: 436 ANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHELYRKM 484


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 171/345 (49%), Gaps = 26/345 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN +I   C EG ++ A   +  M   G +PNV T +T+I G    G +         M
Sbjct: 238 TFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVE-----GARM 292

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           V  +    G+ +P+ + YGSLI G+CK   +++   +  +MK+ G     +  NTL+   
Sbjct: 293 VLDIMKNRGV-EPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGY 351

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C K  LV+A    + M++R + P + TY  L++   L GK++ A  +   M   G +PD 
Sbjct: 352 CNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDS 411

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y++LINGYC+  N ++A N+  EMI  G +              T+T  I++  L K 
Sbjct: 412 ITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTL----------VTYTSLIYV--LSKR 459

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             +    +LF  +        + +FN+LI G C  G  + A  L  ++  +N+V D V Y
Sbjct: 460 NRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTY 519

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N L+    +EG++++   LL  M+  G   D  ++NTL+  + ++
Sbjct: 520 NTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKR 564



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 154/363 (42%), Gaps = 54/363 (14%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V GA M       R   P +  T+ SLI G C  G + +AS +++KM   G  P   T 
Sbjct: 286 RVEGARMVLDIMKNRGVEP-DSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTY 344

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVN-------------------------------GMGD 91
           +TLI G    G++        EMV                                 MGD
Sbjct: 345 NTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGD 404

Query: 92  FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKL 143
            G +  P+   Y  LI+G C+     +  +L  EM  KGI    +        L K+ ++
Sbjct: 405 SGIV--PDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRM 462

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
             A+ L E +++ G +P +  +  L++G+C  G ++ A AL   M ++  +PD  +Y+ L
Sbjct: 463 KAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTL 522

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           + G C+   VEEA            +++  EMK   + P+  + N  I G  K G + + 
Sbjct: 523 MQGRCREGKVEEA------------RELLKEMKRRGIRPDHISYNTLISGYSKRGDINDA 570

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             +   +        +  +N+LI+G CK    ++A EL  ++  K +  D   Y  LI  
Sbjct: 571 FTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEG 630

Query: 324 LGK 326
           +GK
Sbjct: 631 IGK 633



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 20/259 (7%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLLCKKTKLVEANRLLEL---MMQRG 157
           LI   C+ +  D   + F  MK+KG+       N +L    KL +   +  L   M +  
Sbjct: 172 LIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLK 231

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           +   ++T+  ++N  C  GK+  A     SM   G  P+V +Y+ +I+GYC    VE   
Sbjct: 232 IKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVE--- 288

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                    G + + + MK   V P+++T    I G+CK G + E   +   ++      
Sbjct: 289 ---------GARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLP 339

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               +N+LI G C  G    A    +++  + ++  V  YN+LIHAL  EG++ + + ++
Sbjct: 340 TAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMI 399

Query: 338 LSMEENGCALDVDTFNTLM 356
             M ++G   D  T+N L+
Sbjct: 400 KDMGDSGIVPDSITYNILI 418



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 14/202 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ SLI        ++ A  L +K+   G  P++   + LI G    GN++    L +E
Sbjct: 447 VTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKE 506

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLC- 138
           M     D   I  P+   Y +L+ G C++  V++ ++L  EMK +GI       NTL+  
Sbjct: 507 M-----DKRNIV-PDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISG 560

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K+  + +A  + + M+  G NP + TY  L+ G C   + ++A  L   M  KG  PD
Sbjct: 561 YSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPD 620

Query: 197 VFSYSVLINGYCKNFNVEEAMN 218
             +Y  LI G  K  +  EA +
Sbjct: 621 DSTYFSLIEGIGKVDDSSEASD 642



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 91/195 (46%), Gaps = 12/195 (6%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L+   C + + + A   FD M  KG +P + +++ +++ + K  N  E + V        
Sbjct: 172 LIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLK-LNQTETVWV-------- 222

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
              ++ EM    +    +T NI I+ LCK G + +  +   ++E    +  V  +N++I 
Sbjct: 223 ---LYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIH 279

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C  G  E A  + + +  + +  D   Y  LI  + K G++++ + +L  M+E G   
Sbjct: 280 GYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLP 339

Query: 348 DVDTFNTLMISFLQK 362
              T+NTL+  +  K
Sbjct: 340 TAVTYNTLIDGYCNK 354



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 95/208 (45%), Gaps = 12/208 (5%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           L+P + + T L     L  K ++A+     +  KG   D+ +  + +    ++ + +  +
Sbjct: 80  LSPSLISATLL----SLHKKSDLALQFVTHIGFKGL--DIKTKCLAVAVVSRSPSPKSTL 133

Query: 218 NVSREMI---LNGFKKIFNEMKLCNV---VPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
           ++ ++ I   + G K +F+E+ +         +   ++ I   C+     +  E F  ++
Sbjct: 134 HLLKQTIESRVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMK 193

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
                  +E FN+++    K    E    L+ ++    + + V  +NI+I+ L KEG++K
Sbjct: 194 EKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLK 253

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
           K    + SME  G   +V T+NT++  +
Sbjct: 254 KAKDFIGSMENLGVKPNVVTYNTVIHGY 281


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 166/359 (46%), Gaps = 65/359 (18%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V +N++I G C + ++ DA  L  +M + G  PNV T   LI+G    G +   + L
Sbjct: 193 LNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDL 252

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
             +++        I KP+ + +  L+DG CKDR                           
Sbjct: 253 FNKII-----LENI-KPDGYTFNILVDGFCKDR--------------------------- 279

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           K+ E   +  +MM++G+ P + TY  L++GYCLV +VN A ++F++MA+ G  PD+ SY+
Sbjct: 280 KMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYN 339

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           +LING+CK   V++AMN            +FNEM   N++P   T N  IDGL K+G + 
Sbjct: 340 ILINGFCKIKKVDKAMN------------LFNEMHCKNIIPNVVTYNSLIDGLSKSGRIS 387

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS--------------- 306
             ++L   +        +  +NS+I    K    + A  L  K                 
Sbjct: 388 YALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILI 447

Query: 307 ---CKNLVADVV--AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
              CK    D+    YN++IH   K+G   +   LL  M+++ C  +  T+   + S L
Sbjct: 448 DGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLL 506



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 13/202 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N LI GFC    +  A  L  +M      PNV T ++LI GL ++G ++  L+L    
Sbjct: 337 SYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQL---- 392

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           V+ M D G    PN+  Y S+ID L K   VD+   L  + KD+GI  +  +   T L++
Sbjct: 393 VDQMHDRG--VPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPS--MYTYTILID 448

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
                 L    G +  + TY  +++G+C  G  + A++L   M     +P+  +Y + I 
Sbjct: 449 G-----LCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIR 503

Query: 206 GYCKNFNVEEAMNVSREMILNG 227
               N   ++A  + REMI  G
Sbjct: 504 SLLDNNENDKAEKLFREMITRG 525



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 104/242 (42%), Gaps = 33/242 (13%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +A  L   ++++   P  F +  +L         +  ++L   M  +G  P++F+ ++LI
Sbjct: 69  DAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILI 128

Query: 205 NGYCK---------------------NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
             +C+                      F++++   VS   +++G  K+       +++  
Sbjct: 129 YCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQ---VSYGTLIHGLCKVGETRAALDLLQR 185

Query: 244 ---------TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                        N  I G+CK+ HV +  +L+  +        V  +++LI G    G 
Sbjct: 186 VDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGK 245

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A +LFNK+  +N+  D   +NIL+    K+ ++K+   +   M + G   DV T+N+
Sbjct: 246 LKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNS 305

Query: 355 LM 356
           LM
Sbjct: 306 LM 307


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 167/342 (48%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++  +N++I   C  G + +A QL++ M  +G  P+     T+I+G  + GN++   KL 
Sbjct: 311 DEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLF 370

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM            P++  Y S+I G+CK   + + +++F EM  KG+  + +      
Sbjct: 371 DEMRRKK------IVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALI 424

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  ++ EA  +   M+Q+GL P + TYT L +G C  G+++VA  L   M+RKG  
Sbjct: 425 DGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQ 484

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V++Y+ ++NG CK  N+E+ + +  EM L GF             P+T T    +D  
Sbjct: 485 PNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGF------------YPDTITYTTLMDAY 532

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G + +  EL   +     +  +  FN L+ G C  G+ E    L   +  K ++ + 
Sbjct: 533 CKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNA 592

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             +N L+     +  ++    +  +M + G   D +T+N L+
Sbjct: 593 TTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILI 634



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 164/336 (48%), Gaps = 27/336 (8%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + K++ A   F   + +   P ++VT+ +LI G+C  G +++A  +  +M   G  PNV 
Sbjct: 395 SGKMVEAREMFNEMLVKGLEP-DEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVV 453

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   L  GL + G +++  +L  EM        G+ +PNV+ Y ++++GLCK   ++QT 
Sbjct: 454 TYTALADGLCKNGEIDVANELLHEMSRK-----GL-QPNVYTYNTIVNGLCKIGNIEQTV 507

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L  EM   G   +T+         CK  ++ +A+ LL +M+ + L P + T+  L+NG+
Sbjct: 508 KLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGF 567

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C+ G +     L + M  KG MP+  +++ L+  YC   N+     + + M   G     
Sbjct: 568 CMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRG----- 622

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                  V+P++ T NI I G CK  ++ E   L   +      +    +++LIRG  K 
Sbjct: 623 -------VMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKR 675

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
             F  A +LF ++    LVA+   Y+I +    +EG
Sbjct: 676 KKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEG 711



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 164/346 (47%), Gaps = 26/346 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N V+ N ++   C  G +R+A  L+ +M   G  P+V +   +++G  R G ++  LKL
Sbjct: 240 WNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKL 299

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
             E+  G G      KP+ + Y ++I  LCK+  V + + L   M+  G+  + ++    
Sbjct: 300 VDEL-KGKG-----LKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTV 353

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               CK   +  A +L + M ++ + P I TYT +++G C  GK+  A  +F+ M  KG 
Sbjct: 354 ISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGL 413

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD  +Y+ LI+GYCK   ++EA +V  +M+  G            + P   T     DG
Sbjct: 414 EPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKG------------LTPNVVTYTALADG 461

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCKNG +    EL   +     +  V  +N+++ G CK G  E   +L  ++       D
Sbjct: 462 LCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPD 521

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + Y  L+ A  K G++ K + LL  M        + TFN LM  F
Sbjct: 522 TITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGF 567



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 138/275 (50%), Gaps = 37/275 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L  G C  G I  A++L+ +M+  G +PNV T +T++ GL + GN+  T+KL 
Sbjct: 451 NVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLM 510

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
           +EM     D  G Y P+   Y +L+D  CK   + +  +L   M +K +       N L+
Sbjct: 511 EEM-----DLAGFY-PDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLM 564

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C    L +  RL+E M+++G+ P   T+  L+  YC+   +     ++ +M  +G M
Sbjct: 565 NGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVM 624

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
           PD  +Y++LI G+CK  N++EA  + +EM+  G+                       +K+
Sbjct: 625 PDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKL 684

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           F EM+   +V E    +IF+D   + G+    +EL
Sbjct: 685 FEEMRKHGLVAEKDIYDIFVDVNYEEGNWEITLEL 719



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 161/363 (44%), Gaps = 39/363 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++V + ++I GFC  GN+  A +L  +M      P++ T  ++I G+ ++G M    ++ 
Sbjct: 346 DNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMF 405

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM V G+       +P+   Y +LIDG CK   + +   +  +M  KG+  N +     
Sbjct: 406 NEMLVKGL-------EPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTAL 458

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++  AN LL  M ++GL P ++TY  ++NG C +G +   + L + M   GF
Sbjct: 459 ADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGF 518

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGF---------KK 230
            PD  +Y+ L++ YCK   + +A  + R M+              +NGF         ++
Sbjct: 519 YPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGER 578

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +   M    ++P   T N  +   C   ++    E++  +           +N LI+G C
Sbjct: 579 LIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHC 638

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K    + A  L  ++  K        Y+ LI    K  +  +   L   M ++G   + D
Sbjct: 639 KARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKD 698

Query: 351 TFN 353
            ++
Sbjct: 699 IYD 701



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 36/189 (19%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC--KNFNVEEAMNVSRE 222
           + P L   C+V  ++VA              D+ +   L+  +C     +V ++ ++  E
Sbjct: 111 FHPTLESLCIVVHLSVASN------------DIQTAKRLVFEFCAKPKIDVSKSFHLFTE 158

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL-------EISNC 275
           M++  +K   +        P  F  +++   L +NG VLE  +LF  L        + +C
Sbjct: 159 MLIYTYKDWGSH-------PLVF--DLYFQVLVENGFVLEAQKLFHKLLRYGVVVSVDSC 209

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
            LF      L R  C F   +IA ++F +     +  + V+ NI++H L + G++++ + 
Sbjct: 210 NLF------LSRLSCNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHN 263

Query: 336 LLLSMEENG 344
           LL+ M + G
Sbjct: 264 LLVQMTDRG 272


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 161/339 (47%), Gaps = 27/339 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T +V+ A   F   + +   P ++VT+ +LI G+C EG +++A  L  +M   G  PN+ 
Sbjct: 306 TGRVMEADKLFHEMVCKRLEP-DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIV 364

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   L  GL + G ++   +L  EM     +       N++ Y SL++GLCK   +DQ  
Sbjct: 365 TYTALADGLCKCGEVDTANELLHEMCRKGLEL------NIYTYNSLVNGLCKAGNIDQAV 418

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L  +M+  G + + +         CK  ++V A+ LL  M+ R L P + T+  L+NG+
Sbjct: 419 KLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 478

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C+ G +     L   M  KG MP+  +Y+ LI  YC   N+     + R M   G     
Sbjct: 479 CMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKG----- 533

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                  VVP+  T NI I G CK  ++ E   L   +      L V  +N+LI+G  K 
Sbjct: 534 -------VVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKR 586

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
             F  A ELF ++  + LVAD   YNI       EG+++
Sbjct: 587 KKFLEARELFEQMRREGLVADREIYNIFADINYDEGKME 625



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 158/342 (46%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N +I   C  G + +A +++++M + G  P+     TLI G  + GN++   +L 
Sbjct: 222 NPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLF 281

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM            P+   Y ++I GLC+   V +   LF EM  K +  + +      
Sbjct: 282 DEMQKRK------ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 335

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+ K+ EA  L   M+Q GL P I TYT L +G C  G+V+ A  L   M RKG  
Sbjct: 336 DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLE 395

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            ++++Y+ L+NG CK  N+++A+ + ++M + GF             P+  T    +D  
Sbjct: 396 LNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH------------PDAVTYTTLMDAY 443

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK+  ++   EL   +     +  V  FN L+ G C  G+ E   +L   +  K ++ + 
Sbjct: 444 CKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNA 503

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             YN LI        ++    +   M   G   D +T+N L+
Sbjct: 504 TTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILI 545



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 157/350 (44%), Gaps = 39/350 (11%)

Query: 30  LIKGFCMEGN----IRDASQLVKKMATFGCRPNVTTCDTLIT-------GLRRTGNMNLT 78
           LI+ F +  N    +  A +L  KM  +G   +V +C+  I+       G++        
Sbjct: 148 LIQDFWVNPNLDVGVSFARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWV 207

Query: 79  LKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137
           LKL +EM + G+       KPN + Y  +I  LCK   V + + +  EM  +GI  + ++
Sbjct: 208 LKLIEEMQIKGL-------KPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVI 260

Query: 138 --------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                   CK   +  A RL + M +R ++P   TYT ++ G C  G+V  A  LF  M 
Sbjct: 261 YTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV 320

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
            K   PD  +Y+ LI+GYCK   ++EA ++  +M+  G            + P   T   
Sbjct: 321 CKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMG------------LTPNIVTYTA 368

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
             DGLCK G V    EL   +     EL +  +NSL+ G CK G  + A +L   +    
Sbjct: 369 LADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAG 428

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              D V Y  L+ A  K  ++ + + LL  M +      V TFN LM  F
Sbjct: 429 FHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 478


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 169/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 225

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 226 ------------------SKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 268 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK+G +    E    +   N  L   ++ +LI G C+ G    A ++ 
Sbjct: 316 DKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 376 REMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 155/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 135 ECG------YPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   + +   +     + +LI GCCK G  + A E   ++  +N   D V Y 
Sbjct: 297 DLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EGQ      +L  M   G   D  T+  ++  F +K
Sbjct: 357 ALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 24/197 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G++     L 
Sbjct: 246 NSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLI 305

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
            EM + G+       KP+   Y +LIDG CKD  +D       E + + I  NT L    
Sbjct: 306 DEMSMKGL-------KPDKITYTTLIDGCCKDGDLDTA----FEHRKRMIQENTRLDDVV 354

Query: 138 --------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                   C++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M 
Sbjct: 355 YTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 414

Query: 190 RKGFMPDVFSYSVLING 206
           R G +P V +Y+VL+NG
Sbjct: 415 RDGHVPSVVTYNVLMNG 431


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 193/398 (48%), Gaps = 48/398 (12%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F   +++   P N + FN ++       +      L +KM   G +PN+  C+ LI
Sbjct: 46  AVSLFNRLLQQNPTPPN-IEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILI 104

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC-------KDRLVDQT 119
               + G++     +  +++  MG     YKPN     +LI GLC       K  +V + 
Sbjct: 105 NSFCQLGHIPSAFSVLTKILK-MG-----YKPNTITLNTLIKGLCLNGKIHDKHCIVGKL 158

Query: 120 KD---LFMEMKDKGINAN----TLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           KD   LF +M  + IN +    T+L    CK+ ++ EA  +L +MM +G+ P + TY  L
Sbjct: 159 KDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSL 218

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM----- 223
           ++GY LV +VN A ++F++MA+ G  PD+ SYS+LING+CK   ++EAM + +EM     
Sbjct: 219 MDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQI 278

Query: 224 ---------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                    +++G           K+ +EM      P   T +  +D LCKN  V   + 
Sbjct: 279 IPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIA 338

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L   ++    +  +  +  LI+G C+ G  E A ++F  L  K    +V  Y ++I    
Sbjct: 339 LLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFC 398

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +G   +   LL  ME+NGC  +  T+  +++S  +K+
Sbjct: 399 DKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKD 436



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 171/374 (45%), Gaps = 39/374 (10%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNI----------RDASQLVKKMATF 53
           +  A       ++  Y+P N +T N+LIKG C+ G I          +DA  L  KM   
Sbjct: 113 IPSAFSVLTKILKMGYKP-NTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILE 171

Query: 54  GCRPNVTTCDTLITGLRRTGNMNLTLK-LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK 112
              P+V T   L+ G  + G +      L   M+ G+       KP V  Y SL+DG   
Sbjct: 172 NINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGI-------KPGVVTYNSLMDGYFL 224

Query: 113 DRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFT 164
            + V++ K +F  M   G++ +           CK   + EA  LL+ M  + + P + T
Sbjct: 225 VKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVT 284

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y+ L++G C  GK++ A+ L D M  +G  P++ +YS +++  CKN  V+ A+       
Sbjct: 285 YSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAI------- 337

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                 +  +MK   + P  +T  I I GLC++G + +  ++F  L +    L V  +  
Sbjct: 338 -----ALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTV 392

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +I+G C  G+F+ A  L +K+     + +   Y I+I +L K+ + +    LL  M E  
Sbjct: 393 MIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETN 452

Query: 345 CALDVDTFNTLMIS 358
               V   N L+ S
Sbjct: 453 FDGRVALTNDLIAS 466



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 148/312 (47%), Gaps = 26/312 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF  L+ GFC EG +++A  ++  M   G +P V T ++L+ G      +N      + +
Sbjct: 179 TFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKA----KSI 234

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            N M   G    P++  Y  LI+G CK +++D+  +L  EM  K I  N +        L
Sbjct: 235 FNTMAQLG--VSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGL 292

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  K+  A +L++ M  RG  P I TY+ +L+  C   +V+ AIAL   M  +G  P++
Sbjct: 293 CKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNM 352

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           ++Y++LI G C++  +E+A  V  ++++ G           NV    +T  + I G C  
Sbjct: 353 YTYTILIKGLCQSGKLEDARKVFEDLLVKGHN--------LNV----YTYTVMIQGFCDK 400

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G   E + L   +E + C    + +  +I    K    E+A +L  ++   N    V   
Sbjct: 401 GLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETNFDGRVALT 460

Query: 318 NILIHALGKEGQ 329
           N LI ++   G 
Sbjct: 461 NDLIASIWVTGS 472



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 109/280 (38%), Gaps = 68/280 (24%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +A  L   ++Q+   P    +  +L         +  + L   M  +G  P++ + ++LI
Sbjct: 45  DAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILI 104

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKK---------------------------------I 231
           N +C+  ++  A +V  +++  G+K                                  +
Sbjct: 105 NSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDL 164

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS------- 284
           FN+M L N+ P+ +T  I +DG CK G V E   +   + I   +  V  +NS       
Sbjct: 165 FNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFL 224

Query: 285 ----------------------------LIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
                                       LI G CK  + + A EL  ++  K ++ +VV 
Sbjct: 225 VKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVT 284

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y+ LI  L K G+I     L+  M + G   ++ T+++++
Sbjct: 285 YSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSIL 324


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 171/349 (48%), Gaps = 37/349 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I R    +N  T N ++   C +G +      + ++   G  P++ T +TLI+     G 
Sbjct: 216 ISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGL 275

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           M        E+++ M   G  + P V+ Y ++I+GLCK    ++ K++F EM   G++ +
Sbjct: 276 MEEAF----ELMHAMPSKG--FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPD 329

Query: 135 TLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           +          CKK   VE   +   M  R + P +  ++ +++ +   G ++ A+  F+
Sbjct: 330 STTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFN 389

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---- 228
           S+   G +PD   Y++LI GYC+   + EAMN+  EM              IL+G     
Sbjct: 390 SVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRK 449

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                 K+FNEM    + P+++T  I IDG CK G++   MELF  ++    +L V  +N
Sbjct: 450 MLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYN 509

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           +L+ G  K G  + A E++  +  K ++   ++++IL++AL  +G + +
Sbjct: 510 TLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSE 558



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 171/369 (46%), Gaps = 39/369 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ND  F+ LI+ F     +R+A +    + + G   ++  C+ LI  L R G + L  +++
Sbjct: 154 NDSVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIY 213

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL 136
           QE+  +G+G        NV+    +++ LCKD  +++      E+++KG+       NTL
Sbjct: 214 QEISRSGVG-------VNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTL 266

Query: 137 LCKKTK---LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   +    + EA  L+  M  +G +P ++TY  ++NG C  GK   A  +F  M R G 
Sbjct: 267 ISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGL 326

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNV-----SREMI------------------LNGFKK 230
            PD  +Y  L+   CK  +  E  N+     SR+++                  L+    
Sbjct: 327 SPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALM 386

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
            FN +K   ++P+     I I G C+ G + E M L   +    C + V  +N+++ G C
Sbjct: 387 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLC 446

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K  +   A +LFN+++ + L  D     ILI    K G ++    L   M+E    LDV 
Sbjct: 447 KRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVV 506

Query: 351 TFNTLMISF 359
           T+NTL+  F
Sbjct: 507 TYNTLLDGF 515



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 174/359 (48%), Gaps = 29/359 (8%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   +R    P +  T+ SL+   C +G+  +   +   M +    P++    ++++   
Sbjct: 318 FAEMLRSGLSP-DSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFT 376

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R+GN++  L       N + + G I  P+   Y  LI G C+  ++ +  +L  EM  +G
Sbjct: 377 RSGNLDKALMY----FNSVKEAGLI--PDNVIYTILIQGYCRKGMISEAMNLRNEMLQQG 430

Query: 131 -----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                +  NT+L   CK+  L EA++L   M +RGL P  +T T L++G+C +G +  A+
Sbjct: 431 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAM 490

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            LF  M  K    DV +Y+ L++G+ K  +++ A            K+I+ +M    ++P
Sbjct: 491 ELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTA------------KEIWADMVSKEILP 538

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              + +I ++ LC  GH+ E   ++  +   + +  V I NS+I+G C+ G         
Sbjct: 539 TPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFL 598

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN--GCALDVDTFNTLMISF 359
            K+  +  V D ++YN LI+   KE  + K   L+  MEE   G   DV T+N+++  F
Sbjct: 599 EKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGF 657



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 16/217 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT+N+L+ GF   G+I  A ++   M +    P   +   L+  L   G+++   ++
Sbjct: 503 LDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRV 562

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
             EM++         KP V    S+I G C+       +    +M  +G     I+ NTL
Sbjct: 563 WDEMISKS------IKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTL 616

Query: 137 L---CKKTKLVEANRLLELMMQR--GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           +    K+  + +A  L++ M ++  GL P +FTY  +L+G+C   ++  A A+   M  +
Sbjct: 617 IYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIER 676

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           G  PD  +Y+ LING+    N+ EA     EM+  GF
Sbjct: 677 GVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGF 713



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 31/169 (18%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           NS+IKG+C  GN  D    ++KM + G  P+  + +TLI G  +  NM+    L ++M  
Sbjct: 579 NSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEE 638

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEAN 147
             G       P+VF Y S++ G C++                            ++ EA 
Sbjct: 639 KQGGL----VPDVFTYNSILHGFCRE---------------------------NQMKEAE 667

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            +L  M++RG+NP   TYT L+NG+     +  A    D M ++GF PD
Sbjct: 668 AVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPD 716


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 162/330 (49%), Gaps = 45/330 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN L+  FC +G+IR A  +   +A +G RP+V + +TL+ G  R G++N   +L   M+
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
                  G+ +P+V+ Y  LI+GLCK+                           +K+ +A
Sbjct: 203 AS-----GV-QPDVYTYSVLINGLCKE---------------------------SKMDDA 229

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
           N L + M+ +GL P   T+T L++G+C  G+V++A+ ++  M  +  +PD+ +Y+ LI G
Sbjct: 230 NELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG 289

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            CK  ++++A ++  EM + G K             +  T    IDG CK G +    E 
Sbjct: 290 LCKKGDLKQAHDLIDEMSMKGLKX------------DKITYTTLIDGCCKEGDLDAAFEH 337

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +   N  L    + +LI G C+ G    A ++  ++    L  D   Y ++I+   K
Sbjct: 338 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCK 397

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +G + K + LL  M+ NG A  V T+N LM
Sbjct: 398 KGDVWKGSKLLKDMQRNGHAPSVVTYNVLM 427



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 154/344 (44%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L       + 
Sbjct: 73  FSGLITTYLESGFLRDAIECYRLTREHKLRVPFDTCKKVLEHLMKLKYFKLVWGFXXXIX 132

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLCKKT 141
                  G      F +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 133 XX-----GXXXXXXF-FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYI 186

Query: 142 KLVEAN---RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +L + N   RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG  P+  
Sbjct: 187 RLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGV 246

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK G
Sbjct: 247 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNTLIYGLCKKG 294

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 295 DLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYT 354

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 355 ALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKK 398



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 138/291 (47%), Gaps = 29/291 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F +  +   RP + V++N+L+ G+   G++ +  +L   M   G +P+V T   LI
Sbjct: 159 AQSVFDAIAKWGLRP-SVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLI 217

Query: 67  TGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            GL +   M+   +L  EM V G+        PN   + +LIDG CK+  VD   +++ +
Sbjct: 218 NGLCKESKMDDANELFDEMLVKGL-------XPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 270

Query: 126 MKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M  +      I  NTL   LCKK  L +A+ L++ M  +GL     TYT L++G C  G 
Sbjct: 271 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGD 330

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           ++ A      M ++    D  +Y+ LI+G C+     +A  + REM+  G K        
Sbjct: 331 LDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK-------- 382

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
               P+T T  + I+  CK G V +  +L   ++ +     V  +N L+ G
Sbjct: 383 ----PDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 189/424 (44%), Gaps = 87/424 (20%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL      +R  +RP +  TFNSLI G+C    +  A  L  KM   G   +V +  TLI
Sbjct: 172 ALRYLSLMVRSGWRP-DAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLI 230

Query: 67  TGLRRTGNMNLTLKLHQEM-----------VNGM-----GDFGGI---------YKPNVF 101
            GL   G ++  ++L  EM           V G+     G+ G +         ++P+  
Sbjct: 231 EGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTR 290

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----------INANTLLCKKTKLVEANRLL 150
            Y +++D  C++R   + +++  EM +KG           INA    CK+ ++ +A R+L
Sbjct: 291 AYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA---YCKEGRMSDALRVL 347

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
           ELM  RG  P ++TY  L+ G+C  GKV+ A+ L + M   G  PD  +Y++LI G C +
Sbjct: 348 ELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCID 407

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
            ++E A  + R M  +G            ++ + +T N  I+ LCK+G   +   LF +L
Sbjct: 408 GHIESAFRLLRLMEGDG------------LIADQYTYNALINALCKDGRTDQACSLFDSL 455

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL-----G 325
           E    +     FNSLI G CK G  +IA +   K+       D   Y+  I  L      
Sbjct: 456 ETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS 515

Query: 326 KEG-------------------------QIKKENYLLLS-----MEENGCALDVDTFNTL 355
           +EG                          +K+ NY L++     M  +GC  DV T+ T 
Sbjct: 516 QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 575

Query: 356 MISF 359
           M ++
Sbjct: 576 MRAY 579



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 152/355 (42%), Gaps = 24/355 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F    R         T+N++I+  C   ++  A + +  M   G RP+  T ++LI
Sbjct: 136 ALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLI 195

Query: 67  TGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            G  RT  +++   L  +M + G          +V  Y +LI+GLC+   +D+  +LF E
Sbjct: 196 VGYCRTNQVDVARDLFDKMPLRGFAQ-------DVVSYATLIEGLCEAGRIDEAVELFGE 248

Query: 126 MKDKGINANTLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           M    ++    L    C   +  E   +L  M + G  P    Y  +++  C   K   A
Sbjct: 249 MDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEA 308

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             +   M  KG  P V + + +IN YCK   + +A+ V   M L G K            
Sbjct: 309 EEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCK------------ 356

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P  +T N  + G C  G V + M L   +           +N LIRG C  G  E A  L
Sbjct: 357 PNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRL 416

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +    L+AD   YN LI+AL K+G+  +   L  S+E  G   +  TFN+L+
Sbjct: 417 LRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLI 471



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 138/326 (42%), Gaps = 30/326 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT  ++I  +C EG + DA ++++ M   GC+PNV T + L+ G    G      K+H+ 
Sbjct: 325 VTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEG------KVHKA 378

Query: 85  M--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           M  +N M   G    P+   Y  LI G C D  ++    L   M+  G+ A+        
Sbjct: 379 MTLLNKMRACG--VNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALI 436

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  +  +A  L + +  RG+ P   T+  L+NG C  GK ++A    + M   G  
Sbjct: 437 NALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCT 496

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD ++YS  I   CK    +E ++   EM+              +V P T    I I  L
Sbjct: 497 PDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQK------------DVKPSTVNYTIVIHKL 544

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K  +   V   +  +  S C   V  + + +R  C  G    A  +  ++S   +  D 
Sbjct: 545 LKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDT 604

Query: 315 VAYNILIHALGKEGQIKKENYLLLSM 340
           +AYN L+      GQ      +L  M
Sbjct: 605 MAYNTLMDGHASIGQTDHAVSILKQM 630



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 44/345 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+N+LI   C +G    A  L   + T G +PN  T ++LI GL ++G  ++  K  
Sbjct: 428 DQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFL 487

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MV+          P+ + Y S I+ LCK +   +      EM  K +  +T+      
Sbjct: 488 EKMVSAGC------TPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 541

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K+       R    M+  G NP + TYT  +  YC+ G++N A  +   M++ G  
Sbjct: 542 HKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVT 601

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  +Y+ L++G+      + A++            I  +M     VP  FT  I +  L
Sbjct: 602 VDTMAYNTLMDGHASIGQTDHAVS------------ILKQMTSVASVPNQFTYFILLRHL 649

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            +   V +V+ L P       EL  ++F                  LF+ +     + + 
Sbjct: 650 VRMRLVEDVLPLTPAGVWKAIEL-TDVFG-----------------LFDVMKKNEFLPNS 691

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             Y+ ++    ++G+ ++   L+  M+E+  +L+ D +  L+  F
Sbjct: 692 GTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCF 736



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 23/223 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++ + +N+L+ G    G    A  ++K+M +    PN  T   L+  L R   +   L L
Sbjct: 602 VDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPL 661

Query: 82  HQ-------EMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
                    E+ +  G F  + K    PN   Y S+++G  +D   ++   L   MK+  
Sbjct: 662 TPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDS 721

Query: 131 INAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           I+ N        T  CK  + ++A  L+  M+Q G  P + +Y  LL+G    G+ + A 
Sbjct: 722 ISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAK 781

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
            +F +   K + PD   + V+I+G  K  +     ++SREMI+
Sbjct: 782 EIFMNSRWKDYSPDEIVWKVIIDGLIKKGHS----DISREMII 820



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 96/231 (41%), Gaps = 43/231 (18%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P   TY  ++   C    +  A+     M R G+ PD ++++ LI GYC+   V+ A ++
Sbjct: 151 PTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDL 210

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             +M L GF +            +  +    I+GLC+ G + E +ELF  ++  +  ++ 
Sbjct: 211 FDKMPLRGFAQ------------DVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYA 258

Query: 280 EI-------------------------------FNSLIRGCCKFGIFEIASELFNKLSCK 308
            +                               + +++   C+    + A E+  ++  K
Sbjct: 259 ALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEK 318

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            L   VV    +I+A  KEG++     +L  M+  GC  +V T+N L+  F
Sbjct: 319 GLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGF 369



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 112/275 (40%), Gaps = 39/275 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ + ++ +C+EG + +A  ++ +M+  G   +    +TL+ G    G  +  + + ++
Sbjct: 570 VTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQ 629

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M +          PN F Y  L+  L + RLV+      + +   G+       K  +L 
Sbjct: 630 MTSVAS------VPNQFTYFILLRHLVRMRLVEDV----LPLTPAGV------WKAIELT 673

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +   L ++M +    P   TY+ +L G+   G+   A +L   M       +   Y+ L+
Sbjct: 674 DVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALV 733

Query: 205 NGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLCNVV 241
             +CK+    +A  +   MI +GF                       K+IF   +  +  
Sbjct: 734 TCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYS 793

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           P+     + IDGL K GH     E+   LE  NC 
Sbjct: 794 PDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCR 828


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 173/364 (47%), Gaps = 36/364 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N ++ G+C  GN+ +A+Q V K+   G  P+  T  +LI G  +  +++   K+ 
Sbjct: 217 NIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVF 276

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD----KGINANTLL- 137
            EM        G  + N   Y  LI GLC  R +D+  DLF++MKD      +   T+L 
Sbjct: 277 NEM-----PLKGCRR-NEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLI 330

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C   +  EA  L++ M + G+ P I TYT L++  C   K   A  L   M  KG M
Sbjct: 331 KSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLM 390

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNV-----SREM---------ILNGFKK--------IF 232
           P+V +Y+ LINGYCK   +E+A++V     SR++         ++ G+ K        + 
Sbjct: 391 PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVL 450

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           N+M    V+P+  T N  IDG C++G+      L   +           + S+I   CK 
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKS 510

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              E A +LF+ L  K +  +VV Y  LI    K G++ + + +L  M    C  +  TF
Sbjct: 511 KRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570

Query: 353 NTLM 356
           N L+
Sbjct: 571 NALI 574



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 155/351 (44%), Gaps = 51/351 (14%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
            G  + +   P N +T+N+LI G+C  G I DA  +V+ M +    PN  T + LI G  
Sbjct: 381 LGQMLEKGLMP-NVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC 439

Query: 71  RTGNMNLTLKLHQEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           ++        +H+ M  +N M +   +  P+V  Y SLIDG C+    D           
Sbjct: 440 KSN-------VHKAMGVLNKMLERKVL--PDVVTYNSLIDGQCRSGNFDS---------- 480

Query: 129 KGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                            A RLL LM  RGL P  +TYT +++  C   +V  A  LFDS+
Sbjct: 481 -----------------AYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            +KG  P+V  Y+ LI+GYCK   V+EA  +  +M+              N +P + T N
Sbjct: 524 EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSK------------NCLPNSLTFN 571

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             I GLC +G + E   L   +     +  V     LI    K G F+ A   F ++   
Sbjct: 572 ALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS 631

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
               D   Y   I    +EG++     ++  M ENG + D+ T+++L+  +
Sbjct: 632 GTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGY 682



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 177/410 (43%), Gaps = 65/410 (15%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + +V  A   F S  ++   P N V + +LI G+C  G + +A  +++KM +  C PN  
Sbjct: 510 SKRVEEACDLFDSLEQKGVNP-NVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSL 568

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           T + LI GL   G +     L ++MV  G+       +P V     LI  L KD   D  
Sbjct: 569 TFNALIHGLCADGKLKEATLLEEKMVKIGL-------QPTVSTDTILIHRLLKDGDFDHA 621

Query: 120 KDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
              F +M   G   +           C++ +L++A  ++  M + G++P +FTY+ L+ G
Sbjct: 622 YSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKG 681

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING-----YCKNFNVE-EAMNVSREMIL 225
           Y  +G+ N A  +   M   G  P   ++  LI       Y K    E E   +S  M  
Sbjct: 682 YGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEF 741

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE----ISNCELFVEI 281
           +   ++  +M   +V P   +    I G+C+ G++    ++F  ++    IS  EL   +
Sbjct: 742 DTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSEL---V 798

Query: 282 FNSLIRGCCKFGIFEIASELFNKL----------SCKNLV-------------------- 311
           FN+L+  CCK      A+++ + +          SCK L+                    
Sbjct: 799 FNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLL 858

Query: 312 -----ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                 D +A+ I+I  +GK+G ++    L   ME+NGC     T++ L+
Sbjct: 859 QCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLI 908



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 122/287 (42%), Gaps = 50/287 (17%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ 155
           YK  + CY +L++ L +  LVD+ K ++MEM                           ++
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEM---------------------------LE 211

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
             + P I+TY  ++NGYC +G V  A      +   G  PD F+Y+ LI GYC+  +++ 
Sbjct: 212 DKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDS 271

Query: 216 AMNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTCNIFID 252
           A  V  EM L G ++                       +F +MK     P   T  + I 
Sbjct: 272 AFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIK 331

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LC +    E + L   +E +  +  +  +  LI   C    FE A EL  ++  K L+ 
Sbjct: 332 SLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMP 391

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +V+ YN LI+   K G I+    ++  ME    + +  T+N L+  +
Sbjct: 392 NVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGY 438



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 136/345 (39%), Gaps = 79/345 (22%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +TFN+LI G C +G +++A+ L +KM   G +P V+T   LI  L + G+ +      
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRF 625

Query: 83  QEMVN-GMGDFGGIY----------------------------KPNVFCYGSLIDGLCKD 113
           Q+M++ G       Y                             P++F Y SLI G    
Sbjct: 626 QQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDL 685

Query: 114 RLVDQTKDLFMEMKDKGINANTL-----------------------LCKKTKLVEAN--- 147
              +   D+   M+D G   +                         LC  + ++E +   
Sbjct: 686 GQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVV 745

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR-KGFMPDVFSYSVLING 206
            LLE M++  + P   +Y  L+ G C VG + VA  +FD M R +G  P    ++ L++ 
Sbjct: 746 ELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSC 805

Query: 207 YCKNFNVEEAMNVSREMILNG---------------FKK--------IFNEMKLCNVVPE 243
            CK     EA  V  +MI  G               +KK        +F  +  C    +
Sbjct: 806 CCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYED 865

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                I IDG+ K G V    ELF  +E + C+   + ++ LI G
Sbjct: 866 ELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 166/349 (47%), Gaps = 45/349 (12%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + +TL+ 
Sbjct: 108 VWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMN 167

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+              
Sbjct: 168 GYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE-------------- 207

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                        +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+ ++  
Sbjct: 208 -------------SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 254

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +  +PD+ +Y+ LI G CK  ++ +A  +  EM + G K            P+ FT 
Sbjct: 255 MLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLK------------PDKFTY 302

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              IDG CK G +    E    +   N  L    + ++I G C+ G    A ++  ++  
Sbjct: 303 TTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLS 362

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             L  D   Y ++I+   K+G + K + LL  M+ NG    V T+N LM
Sbjct: 363 VGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLM 411



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 158/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 57  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEIL 116

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 117 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 170

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 171 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 230

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK G
Sbjct: 231 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNTLIYGLCKKG 278

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 279 DLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYT 338

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +I  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 339 AIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 382



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 16/193 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G++N    L 
Sbjct: 228 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLI 287

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM + G+       KP+ F Y +LIDG CK+  +D   +    M  + I  + +     
Sbjct: 288 DEMSMKGL-------KPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAI 340

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G 
Sbjct: 341 ISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 400

Query: 194 MPDVFSYSVLING 206
           +P V +Y+VL+NG
Sbjct: 401 VPSVXTYNVLMNG 413


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 180/368 (48%), Gaps = 29/368 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
             K+  AL      + +   P +  T++ LI+G C   N+  A +L+ +M      P V 
Sbjct: 368 AGKMEKALEIMQEMMEKGVEP-DSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVL 426

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           T   +I GL R GN+  T  + +EMV NG+       KPN   Y +L+    K+  V+++
Sbjct: 427 TYSVIINGLCRCGNLQGTNAILREMVMNGL-------KPNAVVYTTLMTAHAKEGRVEES 479

Query: 120 KDLFMEMKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
           + +   M+++GI       N+L+   CK  ++ EA   L  M++R L P   TY   ++G
Sbjct: 480 RMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDG 539

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           Y   G++ +A   F+ M   G +P+V  Y+ LI G+CK  NV EA +V        F+ I
Sbjct: 540 YSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSV--------FRFI 591

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            +      V+ +  T ++ I GL +NG + E   +F  L+          +NSLI G CK
Sbjct: 592 LSR----RVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCK 647

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  + AS+L  ++  K +  D+V YNILI  L K G+I++   L   +E  G   +  T
Sbjct: 648 QGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVT 707

Query: 352 FNTLMISF 359
           +  ++  +
Sbjct: 708 YAAMVDGY 715



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 162/367 (44%), Gaps = 36/367 (9%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           + +LI+G C EGN+ +A  + + + +     +V T   LI GL R G M+    +  E+ 
Sbjct: 568 YTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQ 627

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
                  G+  PN F Y SLI G CK   VD+   L  EM  KGIN + +        LC
Sbjct: 628 EK-----GLL-PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLC 681

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  ++  A  L + +  RGL P   TY  +++GYC       A  L + M  +G  PD F
Sbjct: 682 KAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAF 741

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKK----------------------IFNEMK 236
            Y+V++N  CK    E+A+++ +EM+  GF                        +  EM 
Sbjct: 742 IYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMI 801

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
               +P   T    ID  CK G + E   L+  ++  N     + + SL+ G    G   
Sbjct: 802 EKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMS 861

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             S LF ++  K +  D + Y ++I A  +EG + +   L   +   G  + V  ++ L+
Sbjct: 862 EVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALI 921

Query: 357 ISFLQKE 363
            +  +KE
Sbjct: 922 QALCKKE 928



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 196/437 (44%), Gaps = 100/437 (22%)

Query: 18  CYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            ++ L DV T+ ++I   C  GN++DA +++ +M   GC PN+ T + +I GL R   ++
Sbjct: 208 AHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLD 267

Query: 77  LTLKLHQEMV---------------NG----------------MGDFGGIYKPNVFCYGS 105
             ++L + MV               NG                M D G   KP    Y +
Sbjct: 268 EAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVG--LKPEPITYNA 325

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL---CKKTKLVEANRLLELMMQRG 157
           LIDG  +   ++Q   +  EM   GI AN     TLL   CK  K+ +A  +++ MM++G
Sbjct: 326 LIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG 385

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P   TY+ L+ G+C    +  A  L D M ++   P V +YSV+ING C+  N++   
Sbjct: 386 VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTN 445

Query: 218 NVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTCNIFIDGL 254
            + REM++NG K                        I   M+   ++P+ F  N  I G 
Sbjct: 446 AILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGF 505

Query: 255 CK-------NGHVLEVME--LFPT----------------LEISN--------CELF--V 279
           CK         +++E++E  L P                 +EI++        C +   V
Sbjct: 506 CKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNV 565

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            I+ +LI G CK G    A  +F  +  + ++ DV  Y++LIH L + G++ +   +   
Sbjct: 566 GIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSE 625

Query: 340 MEENGCALDVDTFNTLM 356
           ++E G   +  T+N+L+
Sbjct: 626 LQEKGLLPNAFTYNSLI 642



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 170/370 (45%), Gaps = 50/370 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +NSLI GFC    + +A   + +M     RPN  T    I G  + G M +  +   EM+
Sbjct: 498 YNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEML 557

Query: 87  N-GMGDFGGIYKP----------------------------NVFCYGSLIDGLCKDRLVD 117
           + G+    GIY                              +V  Y  LI GL ++  + 
Sbjct: 558 SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMH 617

Query: 118 QTKDLFMEMKDKGI--NA---NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           +   +F E+++KG+  NA   N+L+   CK+  + +A++LLE M  +G+NP I TY  L+
Sbjct: 618 EAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILI 677

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           +G C  G++  A  LFD +  +G  P+  +Y+ +++GYCK+ N   A  +  EM+L G  
Sbjct: 678 DGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG-- 735

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                     V P+ F  N+ ++  CK     + ++LF  +        V  FN+LI G 
Sbjct: 736 ----------VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGY 784

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G  + A+ L  ++  K  + + V Y  LI    K G + +   L L M+E       
Sbjct: 785 CKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTA 844

Query: 350 DTFNTLMISF 359
            T+ +L+  +
Sbjct: 845 KTYTSLLHGY 854



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 179/387 (46%), Gaps = 42/387 (10%)

Query: 8   LMAFGSFIRRCYRP----LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           L   GS ++ CYR      N V F+ L+  +   G + +A  +      F  RP++ +C+
Sbjct: 126 LAVLGSIVK-CYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCN 184

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           +L+  L +   + L  K+     +GM     +  P+V+ Y ++I   CK   V   K + 
Sbjct: 185 SLLGDLLKGNKVELFWKV----FDGMCAHKVL--PDVYTYTNMISAHCKVGNVKDAKRVL 238

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
           +EM +KG + N +        LC+   L EA  L   M+ +GL P ++TY  L+NG+C+ 
Sbjct: 239 LEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCME 298

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI----------- 224
            +   A  +   M   G  P+  +Y+ LI+G+ +  ++E+A  +  EM+           
Sbjct: 299 KRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIW 358

Query: 225 ---LNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
              LNG  K         I  EM    V P++ T ++ I+G C+  ++    EL   ++ 
Sbjct: 359 NTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 418

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 V  ++ +I G C+ G  +  + +  ++    L  + V Y  L+ A  KEG++++
Sbjct: 419 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEE 478

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
              +L  M E G   DV  +N+L+I F
Sbjct: 479 SRMILERMREQGILPDVFCYNSLIIGF 505



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 171/380 (45%), Gaps = 40/380 (10%)

Query: 10  AFGSFIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           AFG F     + L  N  T+NSLI G C +GN+  ASQL+++M   G  P++ T + LI 
Sbjct: 619 AFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILID 678

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           GL + G +     L  + + G G       PN   Y +++DG CK +       L  EM 
Sbjct: 679 GLCKAGEIERAKNLFDD-IEGRG-----LTPNCVTYAAMVDGYCKSKNPTAAFQLLEEML 732

Query: 128 DKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
            +G+  +  +        CK+ K  +A  L + M+++G    + ++  L+ GYC  GK+ 
Sbjct: 733 LRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQ 791

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------IL 225
            A  L + M  K F+P+  +Y+ LI+  CK   + EA  +  EM              +L
Sbjct: 792 EANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLL 851

Query: 226 NGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           +G+  I         F EM    + P+  T  + ID  C+ G+V+E  +L   + +    
Sbjct: 852 HGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMP 911

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
           + V  +++LI+  CK   F    +L N++        +   +++       G + +   +
Sbjct: 912 MSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEV 971

Query: 337 LLSMEENGCALDVDTFNTLM 356
           L SM + G   +  +   L+
Sbjct: 972 LRSMVKFGWVSNTTSLGDLV 991



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 14/204 (6%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           N VIF    L++ Y  +G +  A+ +F       F P + S + L+    K   VE    
Sbjct: 144 NSVIFDM--LMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVEL--- 198

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                    F K+F+ M    V+P+ +T    I   CK G+V +   +   +    C   
Sbjct: 199 ---------FWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPN 249

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N +I G C+  + + A EL   +  K LV D+  Y+ILI+    E + ++   +LL
Sbjct: 250 LVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLL 309

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            M + G   +  T+N L+  F+++
Sbjct: 310 EMIDVGLKPEPITYNALIDGFMRQ 333


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 187/417 (44%), Gaps = 87/417 (20%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R  +RP +  TFNSLI G+C    +  A  L  KM   G   +V +  TLI GL   G
Sbjct: 1   MVRSGWRP-DAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAG 59

Query: 74  NMNLTLKLHQEM-----------VNGM-----GDFGGI---------YKPNVFCYGSLID 108
            ++  ++L  EM           V G+     G+ G +         ++P+   Y +++D
Sbjct: 60  RIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVD 119

Query: 109 GLCKDRLVDQTKDLFMEMKDKG-----------INANTLLCKKTKLVEANRLLELMMQRG 157
             C++R   + +++  EM +KG           INA    CK+ ++ +A R+LELM  RG
Sbjct: 120 FRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA---YCKEGRMSDALRVLELMKLRG 176

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
             P ++TY  L+ G+C  GKV+ A+ L + M   G  PD  +Y++LI G C + ++E A 
Sbjct: 177 CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAF 236

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            + R M  +G            ++ + +T N  I+ LCK+G   +   LF +LE    + 
Sbjct: 237 RLLRLMEGDG------------LIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKP 284

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL-----GKEG---- 328
               FNSLI G CK G  +IA +   K+       D   Y+  I  L      +EG    
Sbjct: 285 NAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFI 344

Query: 329 ---------------------QIKKENYLLLS-----MEENGCALDVDTFNTLMISF 359
                                 +K+ NY L++     M  +GC  DV T+ T M ++
Sbjct: 345 GEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAY 401



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 138/326 (42%), Gaps = 30/326 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT  ++I  +C EG + DA ++++ M   GC+PNV T + L+ G    G      K+H+ 
Sbjct: 147 VTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEG------KVHKA 200

Query: 85  M--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           M  +N M   G    P+   Y  LI G C D  ++    L   M+  G+ A+        
Sbjct: 201 MTLLNKMRACG--VNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALI 258

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  +  +A  L + +  RG+ P   T+  L+NG C  GK ++A    + M   G  
Sbjct: 259 NALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCT 318

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD ++YS  I   CK    +E ++   EM+              +V P T    I I  L
Sbjct: 319 PDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQK------------DVKPSTVNYTIVIHKL 366

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K  +   V   +  +  S C   V  + + +R  C  G    A  +  ++S   +  D 
Sbjct: 367 LKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDT 426

Query: 315 VAYNILIHALGKEGQIKKENYLLLSM 340
           +AYN L+      GQ      +L  M
Sbjct: 427 MAYNTLMDGHASIGQTDHAVSILKQM 452



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 44/345 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+N+LI   C +G    A  L   + T G +PN  T ++LI GL ++G  ++  K  
Sbjct: 250 DQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFL 309

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MV+          P+ + Y S I+ LCK +   +      EM  K +  +T+      
Sbjct: 310 EKMVSAGC------TPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 363

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K+       R    M+  G NP + TYT  +  YC+ G++N A  +   M++ G  
Sbjct: 364 HKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVT 423

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  +Y+ L++G+      + A++            I  +M     VP  FT  I +  L
Sbjct: 424 VDTMAYNTLMDGHASIGQTDHAVS------------ILKQMTSVASVPNQFTYFILLRHL 471

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            +   V +V+ L P       EL  ++F                  LF+ +     + + 
Sbjct: 472 VRMRLVEDVLPLTPAGVWKAIEL-TDVFG-----------------LFDVMKKNEFLPNS 513

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             Y+ ++    ++G+ ++   L+  M+E+  +L+ D +  L+  F
Sbjct: 514 GTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCF 558



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 23/223 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++ + +N+L+ G    G    A  ++K+M +    PN  T   L+  L R   +   L L
Sbjct: 424 VDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPL 483

Query: 82  HQ-------EMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
                    E+ +  G F  + K    PN   Y S+++G  +D   ++   L   MK+  
Sbjct: 484 TPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDS 543

Query: 131 INAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           I+ N        T  CK  + ++A  L+  M+Q G  P + +Y  LL+G    G+ + A 
Sbjct: 544 ISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAK 603

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
            +F +   K + PD   + V+I+G  K  +     ++SREMI+
Sbjct: 604 EIFMNSRWKDYSPDEIVWKVIIDGLIKKGHS----DISREMII 642



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 112/274 (40%), Gaps = 39/274 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ + ++ +C+EG + +A  ++ +M+  G   +    +TL+ G    G  +  + + ++
Sbjct: 392 VTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQ 451

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M +          PN F Y  L+  L + RLV+      + +   G+       K  +L 
Sbjct: 452 MTSVAS------VPNQFTYFILLRHLVRMRLVEDV----LPLTPAGV------WKAIELT 495

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +   L ++M +    P   TY+ +L G+   G+   A +L   M       +   Y+ L+
Sbjct: 496 DVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALV 555

Query: 205 NGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLCNVV 241
             +CK+    +A  +   MI +GF                       K+IF   +  +  
Sbjct: 556 TCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYS 615

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           P+     + IDGL K GH     E+   LE  NC
Sbjct: 616 PDEIVWKVIIDGLIKKGHSDISREMIIMLERMNC 649


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 174/353 (49%), Gaps = 37/353 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI G C +G I  A  L  +M  FG   N  T   LI GL + G      +++
Sbjct: 197 NVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMY 256

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M        G++ PN++ Y  +++ LCKD        +F EM+++G++ N +      
Sbjct: 257 EKMQEH-----GVF-PNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLI 310

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ K  EAN++++ M    +NP + TY  L++G+C VGK+  A++L   +  +G  
Sbjct: 311 GGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLS 370

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           P + +Y+VL++G+C+  +   A  + +EM   G K                       ++
Sbjct: 371 PSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQL 430

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            + M+   +VP+  T ++ I G C  G + E   LF ++     E    I+N++I G CK
Sbjct: 431 RSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCK 490

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            G    A  LF  +  K L  +V +Y+ LI  L KE ++K+   L+  M ++G
Sbjct: 491 EGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSG 543



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 128/277 (46%), Gaps = 22/277 (7%)

Query: 91  DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTK 142
           +FG  + PNV  Y +LIDG CK   +++ KDLF EM   G+ AN          L K   
Sbjct: 191 EFG--FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGI 248

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
             +   + E M + G+ P ++TY  ++N  C  G+   A  +FD M  +G   ++ +Y+ 
Sbjct: 249 KKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNT 308

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI G C            REM  N   K+ ++MK   + P   T N  IDG C  G + +
Sbjct: 309 LIGGLC------------REMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGK 356

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            + L   L+       +  +N L+ G C+ G    A+++  ++  + +    V Y ILI 
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILID 416

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              +   ++    L  SMEE G   DV T++ L+  F
Sbjct: 417 TFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGF 453



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 125/264 (47%), Gaps = 39/264 (14%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL 158
           +V+ +G +I G C+   ++++ DL +E+++ G + N ++                     
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVI--------------------- 200

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
                 YT L++G C  G++  A  LF  M + G + + ++Y+VLI+G  KN        
Sbjct: 201 ------YTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKN-------G 247

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           + ++    GF +++ +M+   V P  +T N  ++ LCK+G   +  ++F  +        
Sbjct: 248 IKKQ----GF-EMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCN 302

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+LI G C+      A+++ +++    +  +++ YN LI      G++ K   L  
Sbjct: 303 IVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCR 362

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            ++  G +  + T+N L+  F +K
Sbjct: 363 DLKSRGLSPSLVTYNVLVSGFCRK 386



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 95/193 (49%), Gaps = 15/193 (7%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  ++N Y     ++ +I  F+ M  KGF+P    ++ L+      F V  +        
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLT-----FVVGSSS------- 144

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
            N +   FNE K+  VV + ++  I I G C+ G + +  +L   L        V I+ +
Sbjct: 145 FNQWWCFFNESKI-KVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTT 203

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS-MEEN 343
           LI GCCK G  E A +LF ++    LVA+   Y +LIH L K G IKK+ + +   M+E+
Sbjct: 204 LIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG-IKKQGFEMYEKMQEH 262

Query: 344 GCALDVDTFNTLM 356
           G   ++ T+N +M
Sbjct: 263 GVFPNLYTYNCVM 275



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 6/113 (5%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI GFC++G + +AS+L K M      PN    +T+I G  + G+    L+L ++M
Sbjct: 445 TYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDM 504

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138
                       PNV  Y  LI  LCK+R + + +DL  +M D GI+ +  +C
Sbjct: 505 EEKE------LAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTIC 551


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 180/368 (48%), Gaps = 29/368 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
             K+  AL      + +   P +  T++ LI+G C   N+  A +L+ +M      P V 
Sbjct: 359 AGKMEKALEIMQEMMEKGVEP-DSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVL 417

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           T   +I GL R GN+  T  + +EMV NG+       KPN   Y +L+    K+  V+++
Sbjct: 418 TYSVIINGLCRCGNLQGTNAILREMVMNGL-------KPNAVVYTTLMTAHAKEGRVEES 470

Query: 120 KDLFMEMKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
           + +   M+++GI       N+L+   CK  ++ EA   L  M++R L P   TY   ++G
Sbjct: 471 RMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDG 530

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           Y   G++ +A   F+ M   G +P+V  Y+ LI G+CK  NV EA +V        F+ I
Sbjct: 531 YSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSV--------FRFI 582

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            +      V+ +  T ++ I GL +NG + E   +F  L+          +NSLI G CK
Sbjct: 583 LSR----RVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCK 638

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  + AS+L  ++  K +  D+V YNILI  L K G+I++   L   +E  G   +  T
Sbjct: 639 QGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVT 698

Query: 352 FNTLMISF 359
           +  ++  +
Sbjct: 699 YAAMVDGY 706



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 170/370 (45%), Gaps = 50/370 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +NSLI GFC    + +A   + +M     RPN  T    I G  + G M +  +   EM+
Sbjct: 489 YNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEML 548

Query: 87  N-GMGDFGGIYKP----------------------------NVFCYGSLIDGLCKDRLVD 117
           + G+    GIY                              +V  Y  LI GL ++  + 
Sbjct: 549 SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMH 608

Query: 118 QTKDLFMEMKDKGI--NA---NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           +   +F E+++KG+  NA   N+L+   CK+  + +A++LLE M  +G+NP I TY  L+
Sbjct: 609 EAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILI 668

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           +G C  G++  A  LFD +  +G  P+  +Y+ +++GYCK+ N   A  +  EM+L G  
Sbjct: 669 DGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG-- 726

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                     V P+ F  N+ ++  CK     + ++LF  +        V  FN+LI G 
Sbjct: 727 ----------VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGY 775

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G  + A+ L  ++  K  + + V Y  LI    K G + +   L L M+E       
Sbjct: 776 CKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTA 835

Query: 350 DTFNTLMISF 359
            T+ +L+  +
Sbjct: 836 KTYTSLLHGY 845



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 154/341 (45%), Gaps = 27/341 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           + +LI+G C EGN+ +A  + + + +     +V T   LI GL R G M+    +  E+ 
Sbjct: 559 YTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQ 618

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
                  G+  PN F Y SLI G CK   VD+   L  EM  KGIN + +        LC
Sbjct: 619 EK-----GLL-PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLC 672

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  ++  A  L + +  RGL P   TY  +++GYC       A  L + M  +G  PD F
Sbjct: 673 KAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAF 732

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            Y+V++N  CK    E+A+++ +EM+  GF               T + N  I+G CK+G
Sbjct: 733 IYNVILNFCCKEEKFEKALDLFQEMLEKGFAS-------------TVSFNTLIEGYCKSG 779

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + E   L   +           + SLI   CK G+   A  L+ ++  +N++     Y 
Sbjct: 780 KLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYT 839

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            L+H     G + + + L   M   G   D  T+  ++ ++
Sbjct: 840 SLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAY 880



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 189/426 (44%), Gaps = 96/426 (22%)

Query: 18  CYRPLNDV-TFNSLIKGFCMEGNIRDAS-----------------QLVKKMATFGCRPNV 59
            ++ L DV T+ ++I   C  GN++DA                  +L + M   G  P++
Sbjct: 217 AHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDL 276

Query: 60  TTCDTLITGL---RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
            T D LI G    +R+    L L    EM+    D G   KP    Y +LIDG  +   +
Sbjct: 277 YTYDILINGFCMEKRSREAKLML---LEMI----DVG--LKPEPITYNALIDGFMRQGDI 327

Query: 117 DQTKDLFMEMKDKGINAN-----TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           +Q   +  EM   GI AN     TLL   CK  K+ +A  +++ MM++G+ P   TY+ L
Sbjct: 328 EQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLL 387

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           + G+C    +  A  L D M ++   P V +YSV+ING C+  N++    + REM++NG 
Sbjct: 388 IEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGL 447

Query: 229 KK-----------------------IFNEMKLCNVVPETFTCNIFIDGLCK-------NG 258
           K                        I   M+   ++P+ F  N  I G CK         
Sbjct: 448 KPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEART 507

Query: 259 HVLEVME--LFPT----------------LEISN--------CELF--VEIFNSLIRGCC 290
           +++E++E  L P                 +EI++        C +   V I+ +LI G C
Sbjct: 508 YLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHC 567

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G    A  +F  +  + ++ DV  Y++LIH L + G++ +   +   ++E G   +  
Sbjct: 568 KEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF 627

Query: 351 TFNTLM 356
           T+N+L+
Sbjct: 628 TYNSLI 633



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 172/379 (45%), Gaps = 44/379 (11%)

Query: 8   LMAFGSFIRRCYRP----LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           L   GS ++ CYR      N V F+ L+  +   G + +A  +      F  RP++ +C+
Sbjct: 135 LAVLGSIVK-CYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCN 193

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           +L+  L +   + L  K+     +GM     +  P+V+ Y ++I   CK   V   K + 
Sbjct: 194 SLLGDLLKGNKVELFWKV----FDGMCAHKVL--PDVYTYTNMISAHCKVGNVKDAKRVL 247

Query: 124 MEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
           +EM +K             L EA  L   M+ +GL P ++TY  L+NG+C+  +   A  
Sbjct: 248 LEMGEKA----------RLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKL 297

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGFK 229
           +   M   G  P+  +Y+ LI+G+ +  ++E+A  +  EM+              LNG  
Sbjct: 298 MLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVC 357

Query: 230 K---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
           K         I  EM    V P++ T ++ I+G C+  ++    EL   ++       V 
Sbjct: 358 KAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVL 417

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            ++ +I G C+ G  +  + +  ++    L  + V Y  L+ A  KEG++++   +L  M
Sbjct: 418 TYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERM 477

Query: 341 EENGCALDVDTFNTLMISF 359
            E G   DV  +N+L+I F
Sbjct: 478 REQGILPDVFCYNSLIIGF 496



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 135/301 (44%), Gaps = 62/301 (20%)

Query: 10  AFGSFIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           AFG F     + L  N  T+NSLI G C +GN+  ASQL+++M   G  P++ T + LI 
Sbjct: 610 AFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILID 669

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR------------- 114
           GL + G +     L  + + G G       PN   Y +++DG CK +             
Sbjct: 670 GLCKAGEIERAKNLFDD-IEGRG-----LTPNCVTYAAMVDGYCKSKNPTAAFQLLEEML 723

Query: 115 ----------------------LVDQTKDLFMEMKDKG----INANTLL---CKKTKLVE 145
                                   ++  DLF EM +KG    ++ NTL+   CK  KL E
Sbjct: 724 LRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQE 783

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           AN LLE M+++   P   TYT L++  C  G +  A  L+  M  +  MP   +Y+ L++
Sbjct: 784 ANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLH 843

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           GY    N+ E   +  EM+  G +            P+  T  + ID  C+ G+V+E  +
Sbjct: 844 GYHNIGNMSEVSALFEEMVAKGIE------------PDKMTYYVMIDAYCREGNVMEACK 891

Query: 266 L 266
           L
Sbjct: 892 L 892



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 144/307 (46%), Gaps = 41/307 (13%)

Query: 20  RPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           R L DV T++ LI G    G + +A  +  ++   G  PN  T ++LI+G  + GN++  
Sbjct: 586 RVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKA 645

Query: 79  LKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
            +L +EM + G+        P++  Y  LIDGLCK   +++ K+LF +++ +G+  N + 
Sbjct: 646 SQLLEEMCIKGI-------NPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVT 698

Query: 137 -------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                   CK      A +LLE M+ RG+ P  F Y  +LN  C   K   A+ LF  M 
Sbjct: 699 YAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML 758

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------------------- 228
            KGF   V S++ LI GYCK+  ++EA ++  EMI   F                     
Sbjct: 759 EKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMG 817

Query: 229 --KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
             K+++ EM+  NV+P   T    + G    G++ EV  LF  +     E     +  +I
Sbjct: 818 EAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMI 877

Query: 287 RGCCKFG 293
              C+ G
Sbjct: 878 DAYCREG 884



 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 32/204 (15%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           N VIF    L++ Y  +G +  A+ +F       F P + S + L+    K   VE    
Sbjct: 153 NSVIFDM--LMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVEL--- 207

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                    F K+F+ M    V+P+ +T    I   CK G+V +   +   LE+      
Sbjct: 208 ---------FWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVL--LEMGE---- 252

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
                       K  + + A EL   +  K LV D+  Y+ILI+    E + ++   +LL
Sbjct: 253 ------------KARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLL 300

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            M + G   +  T+N L+  F+++
Sbjct: 301 EMIDVGLKPEPITYNALIDGFMRQ 324



 Score = 39.3 bits (90), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 13/105 (12%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQL-----VKKMA-TFGCRPNVTTCDT 64
           F   + +   P + +T+  +I  +C EGN+ +A +L     VK M    G R  + TC  
Sbjct: 858 FEEMVAKGIEP-DKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSV 916

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109
           +  G +  GNM+   ++ + MV     FG +   N    G L+DG
Sbjct: 917 IARGFQIAGNMDEAAEVLRSMVK----FGWV--SNTTSLGDLVDG 955


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 180/368 (48%), Gaps = 37/368 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + F+ L++ +     +R+  +  + + + G   ++  C++L+ GL + G ++L  +++
Sbjct: 26  NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 85

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           QE+V       G+ + NV+    +I+ LCK++ ++ TK    +M++KG     +  NTL+
Sbjct: 86  QEVVR-----SGV-QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 139

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C++  L EA  L++ M  +GL P +FTY  ++NG C  GK   A  + D M + G  
Sbjct: 140 NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 199

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PD  +Y++L+   C+N N+ +A  +  EM   G                         K 
Sbjct: 200 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 259

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F +MK   + P+     I I G C+NG + E +++   +    C L V  +N+++ G CK
Sbjct: 260 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK 319

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
             +   A ELF +++ + +  D   +  LI+   K+G + K   L   M +     DV T
Sbjct: 320 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 379

Query: 352 FNTLMISF 359
           +NTL+  F
Sbjct: 380 YNTLIDGF 387



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 181/370 (48%), Gaps = 27/370 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T K L A       ++    P +  T+N L+   C   N+ DA ++  +M + G  P++ 
Sbjct: 180 TGKYLRAKGVLDEMLKIGMSP-DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLV 238

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           +   LI  L + G ++  LK  ++M N      G+   NV  Y  LI G C++ ++ +  
Sbjct: 239 SFSALIGLLSKNGCLDQALKYFRDMKNA-----GLAPDNVI-YTILIGGFCRNGVMSEAL 292

Query: 121 DLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            +  EM ++G     +  NT+L   CK+  L EA+ L   M +RG+ P  +T+T L+NGY
Sbjct: 293 KVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGY 352

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
              G +N A+ LF+ M ++   PDV +Y+ LI+G+CK   +E+              +++
Sbjct: 353 SKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV------------NELW 400

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           N+M    + P   +  I I+G C  G V E   L+  +     E  +   N++++G C+ 
Sbjct: 401 NDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRA 460

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G    A E  + +  K +V D + YN LI+   KE  + +   L+  ME +G   DV T+
Sbjct: 461 GNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITY 520

Query: 353 NTLMISFLQK 362
           N ++  F ++
Sbjct: 521 NVILNGFSRQ 530



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 168/369 (45%), Gaps = 37/369 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N  T N +I   C    I +    +  M   G  P+V T +TLI    R G +    +L
Sbjct: 95  VNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFEL 154

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
              M +G G      KP VF Y ++I+GLCK     + K +  EM   G++ +T      
Sbjct: 155 MDSM-SGKG-----LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 208

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+   +++A R+ + M  +G+ P + +++ L+      G ++ A+  F  M   G 
Sbjct: 209 LVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 268

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KK 230
            PD   Y++LI G+C+N  + EA+ V  EM              ILNG           +
Sbjct: 269 APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADE 328

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F EM    V P+ +T    I+G  K+G++ + + LF  +   N +  V  +N+LI G C
Sbjct: 329 LFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFC 388

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K    E  +EL+N +  + +  + ++Y ILI+     G + +   L   M E G    + 
Sbjct: 389 KGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATII 448

Query: 351 TFNTLMISF 359
           T NT++  +
Sbjct: 449 TCNTIVKGY 457



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 163/363 (44%), Gaps = 72/363 (19%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+F++LI      G +  A +  + M   G  P+      LI G  R G M+  LK+  E
Sbjct: 238 VSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDE 297

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL-- 137
           M+    + G +   +V  Y ++++GLCK++++ +  +LF EM ++G+  +     TL+  
Sbjct: 298 ML----EQGCVL--DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 351

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K   + +A  L E+M+QR L P + TY  L++G+C   ++     L++ M  +   P+
Sbjct: 352 YSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 411

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
             SY +LINGYC    V EA  +  EM+  GF+                       +  +
Sbjct: 412 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 471

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            M L  +VP+  T N  I+G  K  ++                                 
Sbjct: 472 NMLLKGIVPDGITYNTLINGFIKEENM--------------------------------- 498

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A  L NK+    L+ DV+ YN++++   ++G++++   ++L M E G   D  T+ 
Sbjct: 499 --DRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYT 556

Query: 354 TLM 356
           +L+
Sbjct: 557 SLI 559



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 26/250 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT+N+++ G C E  + +A +L  +M   G  P+  T  TLI G  + GNMN  + L
Sbjct: 305 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 364

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            + M+          KP+V  Y +LIDG CK   +++  +L+ +M  + I  N +     
Sbjct: 365 FEMMIQRN------LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGIL 418

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C    + EA RL + M+++G    I T   ++ GYC  G    A     +M  KG 
Sbjct: 419 INGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGI 478

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PD  +Y+ LING+ K  N++ A              + N+M+   ++P+  T N+ ++G
Sbjct: 479 VPDGITYNTLINGFIKEENMDRAF------------ALVNKMENSGLLPDVITYNVILNG 526

Query: 254 LCKNGHVLEV 263
             + G + E 
Sbjct: 527 FSRQGRMQEA 536



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 108/246 (43%), Gaps = 49/246 (19%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF +LI G+  +GN+  A  L + M     +P+V T +TLI G  +   M    +L  +M
Sbjct: 344 TFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 403

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
           ++       IY PN   YG LI+G C    V +   L+ EM +KG  A     NT++   
Sbjct: 404 ISRR-----IY-PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGY 457

Query: 138 CKKTKLVEANRLLELMMQRG-----------------------------------LNPVI 162
           C+    V+A+  L  M+ +G                                   L P +
Sbjct: 458 CRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDV 517

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            TY  +LNG+   G++  A  +   M  +G  PD  +Y+ LING+    N++EA  V  E
Sbjct: 518 ITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDE 577

Query: 223 MILNGF 228
           M+  GF
Sbjct: 578 MLQRGF 583



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 16/189 (8%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           RR Y   N +++  LI G+C  G + +A +L  +M   G    + TC+T++ G  R GN 
Sbjct: 406 RRIYP--NHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN- 462

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----- 130
              +K  + + N +    GI  P+   Y +LI+G  K+  +D+   L  +M++ G     
Sbjct: 463 --AVKADEFLSNML--LKGIV-PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDV 517

Query: 131 INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           I  N +L    ++ ++ EA  ++  M++RG+NP   TYT L+NG+     +  A  + D 
Sbjct: 518 ITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDE 577

Query: 188 MARKGFMPD 196
           M ++GF+PD
Sbjct: 578 MLQRGFVPD 586



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 14/202 (6%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G NP++F    L+  Y    K+      F  +  KG    + + + L+ G  K   V+ A
Sbjct: 24  GSNPLVFDL--LVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLA 81

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
             + +E++ +G            V    +T NI I+ LCKN  +         +E     
Sbjct: 82  WEIYQEVVRSG------------VQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVF 129

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             V  +N+LI   C+ G+ E A EL + +S K L   V  YN +I+ L K G+  +   +
Sbjct: 130 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 189

Query: 337 LLSMEENGCALDVDTFNTLMIS 358
           L  M + G + D  T+N L++ 
Sbjct: 190 LDEMLKIGMSPDTATYNILLVE 211



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%)

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           NSL+ G  K G  ++A E++ ++    +  +V   NI+I+AL K  +I+     L  MEE
Sbjct: 66  NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 125

Query: 343 NGCALDVDTFNTLMISFLQK 362
            G   DV T+NTL+ ++ ++
Sbjct: 126 KGVFPDVVTYNTLINAYCRQ 145


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 168/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 225

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+  AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 226 ------------------SKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           + FT    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 316 DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M  +G A  V T+N LM
Sbjct: 376 REMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLM 429



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 159/344 (46%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 135 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK G
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNTLIYGLCKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 297 DLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 400



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 15/213 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+ GA   F   + +   P N VTF +LI G C  G +  A ++ K+M +    P++ T
Sbjct: 226 SKMDGANELFDEMLVKGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLIT 284

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI GL + G+    LK   ++++ M   G   KP+ F Y +LIDG CK+  +D   +
Sbjct: 285 YNTLIYGLCKKGD----LKQAHDLIDEMSMKG--LKPDKFTYTTLIDGCCKEGDLDTAFE 338

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
               M  + I  + +        LC++ + V+A ++L  M+  GL P   TYT ++N +C
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFC 398

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             G V     L   M R G  P V +Y+VL+NG
Sbjct: 399 KKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 170/368 (46%), Gaps = 38/368 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN LI  +   G + DA  +  +M   G  P+V T  T+I+   R G +   ++   +MV
Sbjct: 443 FNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMV 502

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---------L 137
                  GI +PN   Y S+I G C    + + K+L  EM +KGI    +         L
Sbjct: 503 AR-----GI-QPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSL 556

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++++A+ + +L+   G  P + T+T L++GYCLVGK++ A  + D+M   G   D+
Sbjct: 557 CKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDI 616

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNE 234
            +YS L++GY KN  + + + + REM   G K                       K F+E
Sbjct: 617 VTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE 676

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M             I + GLC+N    E + LF  L   N +  + I N++I    K   
Sbjct: 677 MIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQR 736

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A ELF  +S   L+ +   Y ++I  L K+G ++  N +  SME++G        N 
Sbjct: 737 KEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNR 796

Query: 355 LMISFLQK 362
           ++   L+K
Sbjct: 797 IIRMLLEK 804



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 134/298 (44%), Gaps = 50/298 (16%)

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           +++ M + G +  PNVF Y  ++ GLC + +  +  DLF  M  +G              
Sbjct: 215 LLHRMSELGCV--PNVFSYSIILKGLCDNSMSQRALDLFQMMAKEG-------------- 258

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                         +P +  Y  +++G+   G+   A +LF  M R+G  PDV +Y+++I
Sbjct: 259 -----------GACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLII 307

Query: 205 NGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVV 241
           +  CK   +++A  V R+M  NG +                       K+F +MK   ++
Sbjct: 308 DALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLI 367

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P    CN F+  LCK+G   E  E+F ++     +  +  + +L+ G    G F     L
Sbjct: 368 PNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGL 427

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           FN +    + AD   +NILIHA  K G +     +   M++ G + DV T++T++ +F
Sbjct: 428 FNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAF 485



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 157/362 (43%), Gaps = 26/362 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDA-SQLVKKMATFGCRPNVTTCDTL 65
            L+ FG  +R   + ++ +T ++L+K  C      +A + L+ +M+  GC PNV +   +
Sbjct: 176 GLVLFGCILRTGLK-IHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSII 234

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           + GL         L L Q M       GG   PNV  Y ++I G  K+    +   LF E
Sbjct: 235 LKGLCDNSMSQRALDLFQMMAKE----GGACSPNVVAYNTVIHGFFKEGETGKACSLFHE 290

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M  +G+  + +        LCK   + +A  +L  M   G  P   TY  +++GY  +G+
Sbjct: 291 MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGR 350

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +  A  +F  M  +G +P++   +  +   CK+   +EA  +   M   G K        
Sbjct: 351 LKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHK-------- 402

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
               P+  +    + G    G   +++ LF +++ +       +FN LI    K G+ + 
Sbjct: 403 ----PDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDD 458

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A  +F ++  + +  DVV Y+ +I A  + G++         M   G   +   +++++ 
Sbjct: 459 AMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQ 518

Query: 358 SF 359
            F
Sbjct: 519 GF 520



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 144/329 (43%), Gaps = 33/329 (10%)

Query: 21  PLNDVTF-NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           P  D+ F NS+I   C +G + DA  +   +   G RP+V T  +LI G    G M+   
Sbjct: 542 PRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAF 601

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           K+   M     +  G+ + ++  Y +L+DG  K+  ++    LF EM+ KG+  NT+   
Sbjct: 602 KILDAM-----EVVGV-ETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYG 655

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                L +  + V A +    M++ G    +  Y  +L G C     + AI LF  +   
Sbjct: 656 IMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKL--- 712

Query: 192 GFMPDVFSYSVL---INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
           G M   FS ++L   IN   K    EEA            K++F  +    ++P   T  
Sbjct: 713 GTMNVKFSITILNTMINAMYKVQRKEEA------------KELFATISASGLLPNESTYG 760

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           + I  L K+G V +   +F ++E S       + N +IR   + G    A    +K+  K
Sbjct: 761 VMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGK 820

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLL 337
            ++ +    ++++    ++G+  ++  LL
Sbjct: 821 RILLEASTTSLMLSLFSRKGKYHEDMKLL 849



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 13/201 (6%)

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            + TY+ L++  C   + ++ + LF  + R G      + S L+   C     EEA+NV 
Sbjct: 156 TVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNV- 214

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL--EISNCELF 278
                     + + M     VP  F+ +I + GLC N      ++LF  +  E   C   
Sbjct: 215 ----------LLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPN 264

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           V  +N++I G  K G    A  LF++++ + +  DVV YN++I AL K   + K   +L 
Sbjct: 265 VVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLR 324

Query: 339 SMEENGCALDVDTFNTLMISF 359
            M  NG   D  T+N ++  +
Sbjct: 325 QMTTNGAQPDTVTYNCMIHGY 345


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 171/372 (45%), Gaps = 50/372 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM- 85
           +N LI G C    + +A  L+  M   G +PN  T    I    ++G + +  +  ++M 
Sbjct: 524 YNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDML 583

Query: 86  --------------VNGMGDFGGIYK--------------PNVFCYGSLIDGLCKDRLVD 117
                         + G  D G   +              P++  Y ++I  L K+    
Sbjct: 584 SSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTK 643

Query: 118 QTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           +   +F++    G+  +  L        CK+  + +A++L + M+  G+NP I  Y  L+
Sbjct: 644 EAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLI 703

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           NG C +G+V  A  LFD +  K  +PDV +YS +I+GYCK+ N+ EA             
Sbjct: 704 NGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAF------------ 751

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
           K+F+EM    + P+ +   I IDG  K G++ + + LF   +  +    +  FNSLI   
Sbjct: 752 KLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSF 810

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G    A ELF+ +  K L  ++V Y ILI A GK   +++   L L ME      + 
Sbjct: 811 CKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNT 870

Query: 350 DTFNTLMISFLQ 361
            T+ +L++S+ Q
Sbjct: 871 LTYTSLLLSYNQ 882



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 175/400 (43%), Gaps = 72/400 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+ +LI GF  EGNI +A ++  +M T G + NV T + +I G+ + G M   + L 
Sbjct: 345 NRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLF 404

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM+       G+ +P+ + Y  LIDG  K   + +  +L  EMK + +  +        
Sbjct: 405 NEML-----MAGL-EPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLI 458

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC  + L +AN +L+ M++ G+ P +F Y  L+  Y    +  +AI L   M   G +
Sbjct: 459 SGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVL 518

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PD+F Y+ LI G C+   VEEA  +  +M   G K                       + 
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY 578

Query: 232 FNEMKLCNVVPETFTCNIFIDGLC-----------------------------------K 256
           F +M    +VP      I I G C                                   K
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSK 638

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG   E M +F     +     V ++NSLI G CK G  E AS+L++++    +  ++V 
Sbjct: 639 NGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVV 698

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN LI+ L K G++ K   L   +EE     DV T++T++
Sbjct: 699 YNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTII 738



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 167/357 (46%), Gaps = 30/357 (8%)

Query: 17  RCYRPL---NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           RCYR     N   F+  I  F + G + +AS +     + G  P +  C+ L+  L +  
Sbjct: 162 RCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKAN 221

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            M L  K++  MV           P+V+ Y ++I   CK   V + K +  EM +K    
Sbjct: 222 MMGLFWKVYGSMVEAK------IVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKP 274

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           N          LC+   + EA  + +LMM++GL P   TYT L++G+C   +   A  +F
Sbjct: 275 NLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIF 334

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           +SM   G  P+ F+Y+ LI+G+ K  N+EEA+ +  EMI  G K         NVV    
Sbjct: 335 ESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLK--------LNVV---- 382

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T N  I G+ K G + + M LF  + ++  E     +N LI G  K      A EL  ++
Sbjct: 383 TYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEM 442

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             + L      Y++LI  L     ++K N +L  M  NG   +V  + TL+ +++Q+
Sbjct: 443 KARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQE 499



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 167/369 (45%), Gaps = 46/369 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V +  LIKG C  GN  +A    K M   G  P++     +I  L + G         
Sbjct: 590 NNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTK------ 643

Query: 83  QEMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
                 MG F    K    P+VF Y SLI G CK+  +++   L+ EM   GIN N +  
Sbjct: 644 ----EAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVY 699

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LCK  ++ +A  L + + ++ L P + TY+ +++GYC  G +  A  LFD M  
Sbjct: 700 NTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMIS 759

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM-------------ILNGF--------- 228
           KG  PD + Y +LI+G  K  N+E+A+++  E              +++ F         
Sbjct: 760 KGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEA 819

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           +++F++M    + P   T  I ID   K   + E  +LF  +E  N       + SL+  
Sbjct: 820 RELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLS 879

Query: 289 CCKFG-IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
             + G  F++ S LF  +  + +  D +AY ++  A  KEG+  +   LL      G  L
Sbjct: 880 YNQIGNRFKMIS-LFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKL 938

Query: 348 DVDTFNTLM 356
           + D F+ L+
Sbjct: 939 EDDVFDALI 947



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 170/368 (46%), Gaps = 30/368 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           K   A+  F  F++    P  DV  +NSLI GFC EG+I  ASQL  +M   G  PN+  
Sbjct: 641 KTKEAMGVFLKFLKTGVVP--DVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVV 698

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI GL + G +    +L  E+     D      P+V  Y ++IDG CK   + +   
Sbjct: 699 YNTLINGLCKLGEVTKARELFDEIEEK--DL----VPDVVTYSTIIDGYCKSGNLTEAFK 752

Query: 122 LFMEMKDKGINANTLLC--------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF EM  KGI+ +  +         K+  L +A  L     Q+ +   +  +  L++ +C
Sbjct: 753 LFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGS-LSAFNSLIDSFC 811

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             GKV  A  LFD M  K   P++ +Y++LI+ Y K   +EEA            +++F 
Sbjct: 812 KHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEA------------EQLFL 859

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +M+  N++P T T    +    + G+  +++ LF  +E          +  +    CK G
Sbjct: 860 DMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEG 919

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A +L NK   + +  +   ++ LI  L KE QI     LL  M +   +L   T N
Sbjct: 920 KSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCN 979

Query: 354 TLMISFLQ 361
           TL++ F +
Sbjct: 980 TLLLGFYK 987



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 150/331 (45%), Gaps = 29/331 (8%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N V +N+LI G C  G +  A +L  ++      P+V T  T+I G  ++GN+    KL 
Sbjct: 695  NIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLF 754

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA----NTLL- 137
             EM++      GI  P+ + Y  LIDG  K+  +++   LF E + K + +    N+L+ 
Sbjct: 755  DEMIS-----KGI-SPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLID 808

Query: 138  --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
              CK  K++EA  L + M+ + L P I TYT L++ Y     +  A  LF  M  +  +P
Sbjct: 809  SFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIP 868

Query: 196  DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI--FNEMKLCNVVPETFTCNIFIDG 253
            +  +Y+ L+              +S   I N FK I  F +M+   +  +     +    
Sbjct: 869  NTLTYTSLL--------------LSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASA 914

Query: 254  LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             CK G  LE ++L     +   +L  ++F++LI   CK        EL +++  + L   
Sbjct: 915  YCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLS 974

Query: 314  VVAYNILIHALGKEGQIKKENYLLLSMEENG 344
                N L+    K G   + + +L  M+  G
Sbjct: 975  SKTCNTLLLGFYKSGNEDEASKVLGVMQRLG 1005


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 172/371 (46%), Gaps = 37/371 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +TFN++I  FC  G +  A   V++M   G  P V T ++LI G  + G+     +  
Sbjct: 394 NRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFL 453

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EM     D  GI KPNV  YGSLI+ LCKDR +   + +  +M  +G++ N  +     
Sbjct: 454 DEM-----DKAGI-KPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLI 507

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C  +KL +A R  + M+Q G++  + TY  L+NG    G+V  A  LF  MA KG  
Sbjct: 508 EASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCN 567

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----------------------KIF 232
           PDV +Y+ LI+GY K+ N ++ + +  +M + G K                      K+F
Sbjct: 568 PDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVVTMDKMF 627

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            EM   ++VP+ F  N  I    ++G+V++ M L   +     +     +NSLI    + 
Sbjct: 628 QEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRD 687

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
                   L + +  K LV  V  YNILI  L          +    M E G  L+V   
Sbjct: 688 RRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMC 747

Query: 353 NTLMISFLQKE 363
             L IS L++E
Sbjct: 748 YQL-ISGLREE 757



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 167/399 (41%), Gaps = 73/399 (18%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            +N ++ G C    I+DA +L  +M      PN  T +TLI G  + G +   L   + M
Sbjct: 194 AYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERM 253

Query: 86  VNGMGDFGGIYKPNVFC----YGSLIDGLCKDRLVDQTKDLFMEMKDKG----------- 130
                      + NV C    Y SL++GLC    VD  +++ +EM+  G           
Sbjct: 254 ----------KEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVF 303

Query: 131 -------------------INANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
                              I+  T       LC+  ++ +A  +L  +++ G+ P   +Y
Sbjct: 304 DDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISY 363

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI- 224
             L+N YC  G V  AI   + M  +G  P+  +++ +I+ +C+   V+ A    R M+ 
Sbjct: 364 NILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVE 423

Query: 225 -------------LNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
                        +NG+ +           +EM    + P   +    I+ LCK+  +++
Sbjct: 424 KGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLID 483

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
              +   +         EI+N LI   C     + A   F+++    + A +V YN LI+
Sbjct: 484 AEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLIN 543

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            LG+ G++KK   L L M   GC  DV T+N+L+  + +
Sbjct: 544 GLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAK 582



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 147/329 (44%), Gaps = 39/329 (11%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
           +A+ L   M   G  P+  + + L+  L  + +   TL +  +++    D G   +P+  
Sbjct: 105 EATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVI----DSG--TRPDAV 158

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
            YG  +      + +D+  +L   M   G+  +          LCK  ++ +A +L + M
Sbjct: 159 AYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEM 218

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           +QR + P   TY  L++GYC VG +  A+   + M  +    ++ +Y+ L+NG C +  V
Sbjct: 219 IQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRV 278

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID---GLCKNGHVLEVMELFPTL 270
           ++A  V  EM  +GF            +P  F   +F D   G   +G       LF   
Sbjct: 279 DDAREVLLEMEGSGF------------LPGGFLSFVFDDHSNGAGDDG-------LFDGK 319

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           EI   E     +  L+ G C+ G  E A E+  KL    +    ++YNIL++A  +EG +
Sbjct: 320 EIRIDE---RTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDV 376

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISF 359
           KK       MEE G   +  TFNT++  F
Sbjct: 377 KKAILTTEQMEERGLEPNRITFNTVISKF 405



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 36/240 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI G    G ++ A  L  +MA  GC P+V T ++LI+G  ++ N    L+L+ +
Sbjct: 536 VTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDK 595

Query: 85  M-VNGMGDFGGIYKP---------------------------NVFCYGSLIDGLCKDRLV 116
           M + G+    G + P                           + F Y  +I    +D  V
Sbjct: 596 MKILGIKPTVGTFHPLIYACRKEGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNV 655

Query: 117 DQTKDLFMEMKDKGINA-----NTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            +   L  +M D+G++      N+L+    +  ++ E   L++ M  +GL P + TY  L
Sbjct: 656 MKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNIL 715

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           + G C +   N A   +  M  +G + +V     LI+G  +   + EA  VS E+ + G 
Sbjct: 716 IKGLCDLKDFNGAYFWYREMVERGLLLNVSMCYQLISGLREEGMLREAQIVSSELSIGGL 775


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 188/429 (43%), Gaps = 87/429 (20%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           + +  AL      +R  +RP +  TFNSLI G+C    +  A  L  KM   G   +V +
Sbjct: 25  ADLASALRYLSLMVRSGWRP-DAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVS 83

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVN----------------GMGDFGGI---------Y 96
              LI G   TG ++  ++L  EM                  G G+ G +         +
Sbjct: 84  YAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGW 143

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----------INANTLLCKKTKLVE 145
           +P+   Y +++D  C +R   + +++  EM +KG           INA    CK+ ++ +
Sbjct: 144 RPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA---YCKEGRMSD 200

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A R+LELM  RG  P ++TY  L+ G+C  GKV+ A+AL + M   G  PD  +Y++LI 
Sbjct: 201 ALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIR 260

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G C + ++E A  + R M  +G            ++ + +T N  I+ LCK+G   +   
Sbjct: 261 GQCIDGHIESAFRLLRLMEGDG------------LIADQYTYNALINALCKDGRTDQACS 308

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL- 324
           LF +LE    +     FNSLI G CK G  +IA +   K+       D   Y+  I  L 
Sbjct: 309 LFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLC 368

Query: 325 ----GKEG-------------------------QIKKENYLLLS-----MEENGCALDVD 350
                +EG                          +K+ NY L++     M  +GC  DV 
Sbjct: 369 KMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVV 428

Query: 351 TFNTLMISF 359
           T+ T M ++
Sbjct: 429 TYTTSMRAY 437



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 150/336 (44%), Gaps = 24/336 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N++I+  C   ++  A + +  M   G RP+  T ++LI G  RT  +++   L  +M
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 86  -VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----CKK 140
            + G       +  +V  Y +LI+G C+   +D+  +LF EM    ++    L    CK 
Sbjct: 73  PLRG-------FAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKA 125

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            +  E   +L  M + G  P    Y  +++  C   K   A  +   M  KG  P V + 
Sbjct: 126 GRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTC 185

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + +IN YCK   + +A+ V   M L G K            P  +T N  + G C  G V
Sbjct: 186 TAVINAYCKEGRMSDALRVLELMKLRGCK------------PNVWTYNALVQGFCNEGKV 233

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            + M L   + +         +N LIRG C  G  E A  L   +    L+AD   YN L
Sbjct: 234 HKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNAL 293

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           I+AL K+G+  +   L  S+E  G   +  TFN+L+
Sbjct: 294 INALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLI 329



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 139/325 (42%), Gaps = 28/325 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT  ++I  +C EG + DA ++++ M   GC+PNV T + L+ G    G ++  + L  +
Sbjct: 183 VTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNK 242

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           M V G+        P+   Y  LI G C D  ++    L   M+  G+ A+         
Sbjct: 243 MRVCGV-------NPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALIN 295

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LCK  +  +A  L + +  RG+ P   T+  L+NG C  GKV++A    + M   G  P
Sbjct: 296 ALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTP 355

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D ++YS  I   CK    +E ++   EM+              +V P T    I I  L 
Sbjct: 356 DTYTYSSFIEHLCKMKGSQEGLSFIGEMLQK------------DVKPSTVNYTIVIHKLL 403

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K  +   V   +  +  S C   V  + + +R  C  G    A  +  ++S   +  D +
Sbjct: 404 KERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTM 463

Query: 316 AYNILIHALGKEGQIKKENYLLLSM 340
           AYN L+      GQ      +L  M
Sbjct: 464 AYNTLMDGHASIGQTDHAVSILKQM 488



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 148/345 (42%), Gaps = 44/345 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+N+LI   C +G    A  L   + T G +PN  T ++LI GL ++G +++  K  
Sbjct: 286 DQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFL 345

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MV+          P+ + Y S I+ LCK +   +      EM  K +  +T+      
Sbjct: 346 EKMVSAGC------TPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 399

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K+       R    M+  G NP + TYT  +  YC+ G++N A  +   M++ G  
Sbjct: 400 HKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVT 459

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  +Y+ L++G+      + A++            I  +M     VP  FT  I +  L
Sbjct: 460 VDTMAYNTLMDGHASIGQTDHAVS------------ILKQMTSVASVPNQFTYFILLRHL 507

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            +   V +V+ L P       EL  ++F                  LF+ +     + + 
Sbjct: 508 VRMRLVEDVLPLTPAGVWKAIEL-TDVFG-----------------LFDVMKKNEFLPNS 549

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             Y+ ++    ++G+ ++   L+  M+E+  +L+ D +  L+  F
Sbjct: 550 GTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCF 594



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 23/223 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++ + +N+L+ G    G    A  ++K+M +    PN  T   L+  L R   +   L L
Sbjct: 460 VDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPL 519

Query: 82  HQ-------EMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
                    E+ +  G F  + K    PN   Y S+++G  +D   ++   L   MK+  
Sbjct: 520 TPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDS 579

Query: 131 INAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           I+ N        T  CK  + ++A  L+  M+Q G  P + +Y  LL+G    G+ + A 
Sbjct: 580 ISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAK 639

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
            +F +   K + PD   + V+I+G  K  +     ++SREMI+
Sbjct: 640 EIFMNSRWKDYSPDEIVWKVIIDGLIKKGHS----DISREMII 678



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 51/231 (22%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           TY  ++   C    +  A+     M R G+ PD ++++ LI GYC+   V+ A ++  +M
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
            L GF +            +  +    I+G C+ G + E +ELF  ++  +    + ++ 
Sbjct: 73  PLRGFAQ------------DVVSYAALIEGFCETGRIDEAVELFGEMDQPD----MHMYA 116

Query: 284 SLIRGCCKFGIFE-----------------------------------IASELFNKLSCK 308
           +L++G CK G  E                                    A E+  ++  K
Sbjct: 117 ALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEK 176

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            L   VV    +I+A  KEG++     +L  M+  GC  +V T+N L+  F
Sbjct: 177 GLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGF 227



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 112/274 (40%), Gaps = 39/274 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ + ++ +C+EG + +A  ++ +M+  G   +    +TL+ G    G  +  + + ++
Sbjct: 428 VTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQ 487

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M +          PN F Y  L+  L + RLV+      + +   G+       K  +L 
Sbjct: 488 MTSVAS------VPNQFTYFILLRHLVRMRLVEDV----LPLTPAGV------WKAIELT 531

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +   L ++M +    P   TY+ +L G+   G+   A +L   M       +   Y+ L+
Sbjct: 532 DVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALV 591

Query: 205 NGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLCNVV 241
             +CK+    +A  +   MI +GF                       K+IF   +  +  
Sbjct: 592 TCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYS 651

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           P+     + IDGL K GH     E+   LE  NC
Sbjct: 652 PDEIVWKVIIDGLIKKGHSDISREMIIMLERMNC 685


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 171/345 (49%), Gaps = 28/345 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N++I G C E  +  A  L+ +M    C PN  T   L+ GL + G +   ++L  E
Sbjct: 11  VSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGE 70

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M        G+ + +V  Y +LI G C    +D+ K LF EM +KGI+ N ++       
Sbjct: 71  MKRK-----GL-EVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLING 124

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CKK    EA  +L  M +RG+ P ++TYT ++ G C  G+   A+ LFD M  KG  P 
Sbjct: 125 FCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPS 184

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+VLING CK   + +A  +   M+  G K++           E  + N  I GLC 
Sbjct: 185 TVTYNVLINGLCKEGCIGDAFKIFETMLEKG-KRL-----------EVVSYNTLIMGLCN 232

Query: 257 NGHVLEVMELFPT-LEISN-CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           NG + E M+LF + LE  N  E  V  FN++I+G CK G  + A E+++ +  +    ++
Sbjct: 233 NGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNL 292

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              +ILI    K G I K   L   + + G      T++ ++  F
Sbjct: 293 FTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGF 337



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 181/382 (47%), Gaps = 40/382 (10%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   + +   P N V ++ LI GFC +G  R+A+ ++  M   G +P+V T   +I GL 
Sbjct: 103 FDEMLEKGISP-NVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLC 161

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G     L L   M    G+     +P+   Y  LI+GLCK+  +     +F  M +KG
Sbjct: 162 KDGRARKALDLFDLMTE-KGE-----EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKG 215

Query: 131 -----INANTL---LCKKTKLVEANRLLELMMQRG--LNPVIFTYTPLLNGYCLVGKVNV 180
                ++ NTL   LC   KL EA +L   +++ G  + P + T+  ++ G C  G+++ 
Sbjct: 216 KRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDK 275

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILN 226
           A+ ++D+M  +G   ++F+  +LI  Y K+  +++AM + + +              +++
Sbjct: 276 AVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMID 335

Query: 227 GF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           GF         K +F+ MK+  + P  F  N  +  LCK   + +   LF  ++ SNCE 
Sbjct: 336 GFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEP 395

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               FN +I G  K G    A EL N +    L  D   Y+  I+ L K GQ+++     
Sbjct: 396 DTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAF 455

Query: 338 LSMEENGCALDVDTFNTLMISF 359
            SM  +G   D   +++L+  F
Sbjct: 456 DSMIASGITPDNHVYDSLIKGF 477



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 137/269 (50%), Gaps = 22/269 (8%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  Y ++I+GLCK++ +++  DL +EM+      N+         LCK+ ++ EA RL
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  M ++GL   +  Y+ L++G+C  G ++   ALFD M  KG  P+V  YS LING+CK
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                EA  V   M   G +            P+ +T    I GLCK+G   + ++LF  
Sbjct: 128 KGLWREATAVLHTMTERGIQ------------PDVYTYTCMIGGLCKDGRARKALDLFDL 175

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     E     +N LI G CK G    A ++F  +  K    +VV+YN LI  L   G+
Sbjct: 176 MTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGK 235

Query: 330 IKKENYLLLSMEENG--CALDVDTFNTLM 356
           + +   L  S+ E+G     DV TFNT++
Sbjct: 236 LDEAMKLFSSLLEDGNYVEPDVITFNTVI 264



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 168/382 (43%), Gaps = 59/382 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+  L+ G C EG + +A +L+ +M   G   +V    TLI+G    G ++    L 
Sbjct: 44  NSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALF 103

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM+       GI  PNV  Y  LI+G CK  L  +   +   M ++GI  +        
Sbjct: 104 DEMLE-----KGI-SPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMI 157

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  +  +A  L +LM ++G  P   TY  L+NG C  G +  A  +F++M  KG  
Sbjct: 158 GGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKR 217

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +V SY+ LI G C N  ++EAM +   ++ +G            V P+  T N  I GL
Sbjct: 218 LEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNY----------VEPDVITFNTVIQGL 267

Query: 255 CKNGHVLEVMELFPTL-------EISNCELFV---------------------------- 279
           CK G + + +E++ T+        +  C + +                            
Sbjct: 268 CKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSS 327

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             ++ +I G CK  +   A  LF+++    L   +  YN L+ +L KE  +++   L   
Sbjct: 328 TTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQE 387

Query: 340 MEENGCALDVDTFNTLMISFLQ 361
           M+E+ C  D  +FN ++   L+
Sbjct: 388 MKESNCEPDTISFNIMIDGTLK 409



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 158/330 (47%), Gaps = 39/330 (11%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F     +   P + VT+N LI G C EG I DA ++ + M   G R  V + +TLI
Sbjct: 169 ALDLFDLMTEKGEEP-STVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLI 227

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   G ++  +KL   ++      G   +P+V  + ++I GLCK+  +D+  +++  M
Sbjct: 228 MGLCNNGKLDEAMKLFSSLLED----GNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTM 283

Query: 127 KDKGINANTLLCK-------KTKLVE-ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            ++G   N   C        K+ +++ A  L + + + GL P   TY+ +++G+C +  +
Sbjct: 284 IERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHML 343

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI-------------- 224
           N A  LF  M   G  P +F Y+ L+   CK  ++E+A  + +EM               
Sbjct: 344 NFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIM 403

Query: 225 ---------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                    ++  K++ N+M+   + P+ +T + FI+ L K G + E    F ++  S  
Sbjct: 404 IDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGI 463

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
                +++SLI+G   FG+ +   E+ N L
Sbjct: 464 TPDNHVYDSLIKG---FGLNDEIEEVINLL 490



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 135/303 (44%), Gaps = 54/303 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  +L+  G+++       + +TFN++I+G C EG +  A ++   M   G   N+ TC
Sbjct: 241 KLFSSLLEDGNYVEP-----DVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTC 295

Query: 63  DTLITGLRRTGNMNLTLKLHQE---------------MVNG-----MGDFG-GIYK---- 97
             LI    ++G ++  ++L +                M++G     M +F  G++     
Sbjct: 296 HILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKI 355

Query: 98  ----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVE 145
               P +F Y +L+  LCK+  ++Q + LF EMK+     +T+          K   +  
Sbjct: 356 SGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHS 415

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  LL  M Q GL P  +TY+  +N    +G++  A   FDSM   G  PD   Y  LI 
Sbjct: 416 AKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIK 475

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G+  N  +EE +N+ R+M   G            V+ +    N  +  LC +   L VME
Sbjct: 476 GFGLNDEIEEVINLLRQMADMG------------VILDLEITNSILTFLCNSAEHLHVME 523

Query: 266 LFP 268
           L P
Sbjct: 524 LLP 526



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 23/223 (10%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P I +Y  ++NG C   ++  A+ L   M      P+ F+Y +L++G CK   VEEAM +
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 220 SREM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             EM              +++GF         K +F+EM    + P     +  I+G CK
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G   E   +  T+     +  V  +  +I G CK G    A +LF+ ++ K      V 
Sbjct: 128 KGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVT 187

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           YN+LI+ L KEG I     +  +M E G  L+V ++NTL++  
Sbjct: 188 YNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGL 230



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%)

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           MK  N++P+  + N  I+GLCK   + + ++L   +E S+CE     +  L+ G CK G 
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A  L  ++  K L  DVV Y+ LI     +G + +   L   M E G + +V  ++ 
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 355 LMISFLQK 362
           L+  F +K
Sbjct: 121 LINGFCKK 128


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 171/351 (48%), Gaps = 25/351 (7%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N V++  L++  C +     A  L++ M + G R +V T  TLI GL     ++  +
Sbjct: 112 RP-NAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAV 170

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +L  EM        GI +PNV  Y SL+ G CK    +    +F+EM +KGI  + +   
Sbjct: 171 ELMGEMCES-----GI-EPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  K  +A+ ++++M++RGL P + TY  L+N  C  G V  AI +   M+ K
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 284

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PDV +Y+ LI G      ++EAM +  EM+    K I        V P   T N  I
Sbjct: 285 GVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRG--KNI--------VKPNVVTFNSVI 334

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
            GLC  G + +  ++   +E + C + +  +N LI G  +      A EL ++++   L 
Sbjct: 335 QGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLE 394

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            D   Y+ILI    K  Q+ +   LL +M + G   ++  +  L+++  ++
Sbjct: 395 PDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQ 445



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 167/349 (47%), Gaps = 45/349 (12%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +RR   P N VT+N LI   C EG++++A  ++KKM+  G  P+V T +TLI GL    
Sbjct: 246 MVRRGLEP-NVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVL 304

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            M+  + L +EMV G      I KPNV  + S+I GLC                D G   
Sbjct: 305 EMDEAMWLLEEMVRG----KNIVKPNVVTFNSVIQGLC----------------DIG--- 341

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                   ++ +A ++  +M + G    + TY  L+ G   V KV  A+ L D M   G 
Sbjct: 342 --------RMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGL 393

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD F+YS+LI G+CK + V+ A            + + + M+   + PE F     +  
Sbjct: 394 EPDSFTYSILIKGFCKMWQVDRA------------EDLLSTMRDRGIEPELFHYIPLLVA 441

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           +C+ G +     LF  ++ +N  L V  ++++I G CK G  + A EL   +  + L  D
Sbjct: 442 MCEQGMMERARNLFNEMD-NNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPD 500

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            V Y+I+I+   K G ++  N +L  M  +G   DV  F++L+  +  K
Sbjct: 501 AVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTK 549



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 107/244 (43%), Gaps = 48/244 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFNS+I+G C  G +R A Q+   M   GC  N+ T + LI GL R   +   ++L 
Sbjct: 326 NVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELM 385

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA--------- 133
            EM + +G      +P+ F Y  LI G CK   VD+ +DL   M+D+GI           
Sbjct: 386 DEMTS-LG-----LEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLL 439

Query: 134 ------------------------------NTLL---CKKTKLVEANRLLELMMQRGLNP 160
                                         +T++   CK   L  A  LL+ ++  GL P
Sbjct: 440 VAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTP 499

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
              TY+ ++N +   G +  A  +   M   GF+PDV  +  LI GY     + + + + 
Sbjct: 500 DAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELI 559

Query: 221 REMI 224
           REMI
Sbjct: 560 REMI 563



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 12/179 (6%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A +L D++     + D  SY+ ++   C+  + + A  + R M L            C  
Sbjct: 64  ATSLLDALPS---VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPA-------CR- 112

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P   +  + +  LC +    + + L  ++  +     V  + +LIRG C     + A E
Sbjct: 113 -PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L  ++    +  +VV Y+ L+    K G+ +    + + M E G   DV  +  L+ S 
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSL 230


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 180/368 (48%), Gaps = 37/368 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + F+ L++ +     +R+  +  + + + G   ++  C++L+ GL + G ++L  +++
Sbjct: 287 NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 346

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           QE+V       G+ + NV+    +I+ LCK++ ++ TK    +M++KG     +  NTL+
Sbjct: 347 QEVVR-----SGV-QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 400

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C++  L EA  L++ M  +GL P +FTY  ++NG C  GK   A  + D M + G  
Sbjct: 401 NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 460

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PD  +Y++L+   C+N N+ +A  +  EM   G                         K 
Sbjct: 461 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 520

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F +MK   + P+     I I G C+NG + E +++   +    C L V  +N+++ G CK
Sbjct: 521 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCK 580

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
             +   A ELF +++ + +  D   +  LI+   K+G + K   L   M +     DV T
Sbjct: 581 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVT 640

Query: 352 FNTLMISF 359
           +NTL+  F
Sbjct: 641 YNTLIDGF 648



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 181/370 (48%), Gaps = 27/370 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T K L A       ++    P +  T+N L+   C   N+ DA ++  +M + G  P++ 
Sbjct: 441 TGKYLRAKGVLDEMLKIGMSP-DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLV 499

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           +   LI  L + G ++  LK  ++M N      G+   NV  Y  LI G C++ ++ +  
Sbjct: 500 SFSALIGLLSKNGCLDQALKYFRDMKNA-----GLAPDNVI-YTILIGGFCRNGVMSEAL 553

Query: 121 DLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            +  EM ++G     +  NT+L   CK+  L EA+ L   M +RG+ P  +T+T L+NGY
Sbjct: 554 KVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGY 613

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
              G +N A+ LF+ M ++   PDV +Y+ LI+G+CK   +E+              +++
Sbjct: 614 XKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV------------NELW 661

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           N+M    + P   +  I I+G C  G V E   L+  +     E  +   N++++G C+ 
Sbjct: 662 NDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRA 721

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G    A E  + +  K +V D + YN LI+   KE  + +   L+  ME +G   DV T+
Sbjct: 722 GNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITY 781

Query: 353 NTLMISFLQK 362
           N ++  F ++
Sbjct: 782 NVILNGFSRQ 791



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 168/369 (45%), Gaps = 37/369 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N  T N +I   C    I +    +  M   G  P+V T +TLI    R G +    +L
Sbjct: 356 VNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFEL 415

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
              M +G G      KP VF Y ++I+GLCK     + K +  EM   G++ +T      
Sbjct: 416 MDSM-SGKG-----LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 469

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+   +++A R+ + M  +G+ P + +++ L+      G ++ A+  F  M   G 
Sbjct: 470 LVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 529

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KK 230
            PD   Y++LI G+C+N  + EA+ V  EM              ILNG           +
Sbjct: 530 APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADE 589

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F EM    V P+ +T    I+G  K+G++ + + LF  +   N +  V  +N+LI G C
Sbjct: 590 LFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFC 649

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K    E  +EL+N +  + +  + ++Y ILI+     G + +   L   M E G    + 
Sbjct: 650 KGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATII 709

Query: 351 TFNTLMISF 359
           T NT++  +
Sbjct: 710 TCNTIVKGY 718



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 156/342 (45%), Gaps = 61/342 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++V +  LI GFC  G + +A ++  +M   GC  +V T +T+                 
Sbjct: 532 DNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTI----------------- 574

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL 137
                                   ++GLCK++++ +  +LF EM ++G+  +     TL+
Sbjct: 575 ------------------------LNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLI 610

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K   + +A  L E+M+QR L P + TY  L++G+C   ++     L++ M  +   
Sbjct: 611 NGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY 670

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  SY +LINGYC    V EA  +  EM+  GF+                TCN  + G 
Sbjct: 671 PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATI------------ITCNTIVKGY 718

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G+ ++  E    + +         +N+LI G  K    + A  L NK+    L+ DV
Sbjct: 719 CRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDV 778

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + YN++++   ++G++++   ++L M E G   D  T+ +L+
Sbjct: 779 ITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLI 820



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 26/250 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT+N+++ G C E  + +A +L  +M   G  P+  T  TLI G  + GNMN  + L
Sbjct: 566 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTL 625

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            + M+          KP+V  Y +LIDG CK   +++  +L+ +M  + I  N +     
Sbjct: 626 FEMMIQRN------LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGIL 679

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C    + EA RL + M+++G    I T   ++ GYC  G    A     +M  KG 
Sbjct: 680 INGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGI 739

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PD  +Y+ LING+ K  N++ A              + N+M+   ++P+  T N+ ++G
Sbjct: 740 VPDGITYNTLINGFIKEENMDRAF------------ALVNKMENSGLLPDVITYNVILNG 787

Query: 254 LCKNGHVLEV 263
             + G + E 
Sbjct: 788 FSRQGRMQEA 797



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 108/246 (43%), Gaps = 49/246 (19%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF +LI G+  +GN+  A  L + M     +P+V T +TLI G  +   M    +L  +M
Sbjct: 605 TFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 664

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
           ++       IY PN   YG LI+G C    V +   L+ EM +KG  A     NT++   
Sbjct: 665 ISRR-----IY-PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGY 718

Query: 138 CKKTKLVEANRLLELMMQRG-----------------------------------LNPVI 162
           C+    V+A+  L  M+ +G                                   L P +
Sbjct: 719 CRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDV 778

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            TY  +LNG+   G++  A  +   M  +G  PD  +Y+ LING+    N++EA  V  E
Sbjct: 779 ITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDE 838

Query: 223 MILNGF 228
           M+  GF
Sbjct: 839 MLQRGF 844



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 16/189 (8%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           RR Y   N +++  LI G+C  G + +A +L  +M   G    + TC+T++ G  R GN 
Sbjct: 667 RRIYP--NHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN- 723

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----- 130
              +K  + + N +    GI  P+   Y +LI+G  K+  +D+   L  +M++ G     
Sbjct: 724 --AVKADEFLSNML--LKGIV-PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDV 778

Query: 131 INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           I  N +L    ++ ++ EA  ++  M++RG+NP   TYT L+NG+     +  A  + D 
Sbjct: 779 ITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDE 838

Query: 188 MARKGFMPD 196
           M ++GF+PD
Sbjct: 839 MLQRGFVPD 847



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 126/280 (45%), Gaps = 24/280 (8%)

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTLL 137
           L+L Q  ++ +      +K ++  + ++I  L + R +   + + + M +  G++     
Sbjct: 215 LQLGQRFIDSITSNCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVS----- 269

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
             + ++VE+  L+      G NP++F    L+  Y    K+      F  +  KG    +
Sbjct: 270 --RVEIVES--LVLTYGNCGSNPLVFDL--LVRTYVQARKLREGCEAFRVLKSKGLCVSI 323

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            + + L+ G  K   V+ A  + +E++ +G +         NV    +T NI I+ LCKN
Sbjct: 324 NACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQ--------VNV----YTLNIMINALCKN 371

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             +         +E       V  +N+LI   C+ G+ E A EL + +S K L   V  Y
Sbjct: 372 QKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTY 431

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           N +I+ L K G+  +   +L  M + G + D  T+N L++
Sbjct: 432 NAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLV 471



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%)

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           NSL+ G  K G  ++A E++ ++    +  +V   NI+I+AL K  +I+     L  MEE
Sbjct: 327 NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 386

Query: 343 NGCALDVDTFNTLMISFLQK 362
            G   DV T+NTL+ ++ ++
Sbjct: 387 KGVFPDVVTYNTLINAYCRQ 406


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 171/351 (48%), Gaps = 25/351 (7%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N V++  L++  C +     A  L++ M + G R +V T  TLI GL     ++  +
Sbjct: 112 RP-NAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAV 170

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +L  EM        GI +PNV  Y SL+ G CK    +    +F+EM +KGI  + +   
Sbjct: 171 ELMGEMCES-----GI-EPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  K  +A+ ++++M++RGL P + TY  L+N  C  G V  AI +   M+ K
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 284

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PDV +Y+ LI G      ++EAM +  EM+    K I        V P   T N  I
Sbjct: 285 GVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRG--KNI--------VKPNVVTFNSVI 334

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
            GLC  G + +  ++   +E + C + +  +N LI G  +      A EL ++++   L 
Sbjct: 335 QGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLE 394

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            D   Y+ILI    K  Q+ +   LL +M + G   ++  +  L+++  ++
Sbjct: 395 PDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQ 445



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 167/349 (47%), Gaps = 45/349 (12%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +RR   P N VT+N LI   C EG++++A  ++KKM+  G  P+V T +TLI GL    
Sbjct: 246 MVRRGLEP-NVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVL 304

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            M+  + L +EMV G      I KPNV  + S+I GLC                D G   
Sbjct: 305 EMDEAMWLLEEMVRG----KNIVKPNVVTFNSVIQGLC----------------DIG--- 341

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                   ++ +A ++  +M + G    + TY  L+ G   V KV  A+ L D M   G 
Sbjct: 342 --------RMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGL 393

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD F+YS+LI G+CK + V+ A            + + + M+   + PE F     +  
Sbjct: 394 EPDSFTYSILIKGFCKMWQVDRA------------EDLLSTMRDRGIEPELFHYIPLLVA 441

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           +C+ G +     LF  ++ +N  L V  ++++I G CK G  + A EL   +  + L  D
Sbjct: 442 MCEQGMMERARNLFNEMD-NNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPD 500

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            V Y+I+I+   K G ++  N +L  M  +G   DV  F++L+  +  K
Sbjct: 501 AVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTK 549



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 107/244 (43%), Gaps = 48/244 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFNS+I+G C  G +R A Q+   M   GC  N+ T + LI GL R   +   ++L 
Sbjct: 326 NVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELM 385

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA--------- 133
            EM + +G      +P+ F Y  LI G CK   VD+ +DL   M+D+GI           
Sbjct: 386 DEMTS-LG-----LEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLL 439

Query: 134 ------------------------------NTLL---CKKTKLVEANRLLELMMQRGLNP 160
                                         +T++   CK   L  A  LL+ ++  GL P
Sbjct: 440 VAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTP 499

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
              TY+ ++N +   G +  A  +   M   GF+PDV  +  LI GY     + + + + 
Sbjct: 500 DAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELI 559

Query: 221 REMI 224
           REMI
Sbjct: 560 REMI 563



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 78/191 (40%), Gaps = 12/191 (6%)

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           LN +  +  +  A +L D++     + D  SY+ ++   C+  + + A  + R M L   
Sbjct: 52  LNRHLRLLPLGEATSLLDALPS---VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPH 108

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                    C   P   +  + +  LC +    + + L  ++  +     V  + +LIRG
Sbjct: 109 PA-------CR--PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRG 159

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C     + A EL  ++    +  +VV Y+ L+    K G+ +    + + M E G   D
Sbjct: 160 LCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPD 219

Query: 349 VDTFNTLMISF 359
           V  +  L+ S 
Sbjct: 220 VVMYTGLIDSL 230


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 164/336 (48%), Gaps = 27/336 (8%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R  +P N VT+N ++K F  +G + +  + V+KM   GC P++ T +TLI+   + G M+
Sbjct: 366 RGMKP-NSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMD 424

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----I 131
              +L  EM    G  G   K +     +++  LC++R +D+  DL    + +G     +
Sbjct: 425 EAFRLMDEM----GRKG--LKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEV 478

Query: 132 NANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
           +  TL+    K  K  +A RL + M ++ + P I TY  ++ G C +GK N AI   D +
Sbjct: 479 SYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDEL 538

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
              G +PD  +Y+ +I+GYC+   VE+A     +M+   FK            P+  TCN
Sbjct: 539 LESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFK------------PDVVTCN 586

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             + GLCK G + + ++LF T      ++    +N++I   CK   F  A +L  ++  K
Sbjct: 587 TLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEK 646

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            L  D   YN ++  L   G++K     +  + E G
Sbjct: 647 KLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKG 682



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 166/346 (47%), Gaps = 26/346 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N +I GFC +G I +A +L ++M      P+V T +TLI G    G+     KL +EM
Sbjct: 304 TYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEM 363

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
             G G      KPN   Y  ++    K   +D+      +M++ G     +  NTL+   
Sbjct: 364 -EGRG-----MKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWH 417

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  K+ EA RL++ M ++GL     T   +L   C   K++ A  L  S  R+G+  D 
Sbjct: 418 CKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDE 477

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY  LI GY K+    +A+            ++++EMK   ++P   T N  I GLC+ 
Sbjct: 478 VSYGTLIIGYFKHEKASQAL------------RLWDEMKEKEIIPSIITYNSMIAGLCQM 525

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G   + ++    L  S        +N++I G C+ G  E A +  NK+  KN   DVV  
Sbjct: 526 GKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTC 585

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           N L+  L KEG ++K   L  +    G  +D  ++NT+++S  +++
Sbjct: 586 NTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEK 631



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 176/386 (45%), Gaps = 60/386 (15%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR-------- 71
           +PL D++    I  +   G    A+Q+  +M   G +P + TC+TL+  L R        
Sbjct: 124 KPLLDIS----IGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIR 179

Query: 72  ------TGNMNLTLKLHQEMVN--------------------GMGDFGGIYKPNVFCYGS 105
                 T  + + +K++    N                     M D+G    P+   Y +
Sbjct: 180 LSKAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGC--PPDNITYNT 237

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRG 157
           ++DGLCK   +++ +DL ++MK+KG+  N           C+   L EA  ++ELM Q  
Sbjct: 238 ILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNS 297

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P  +TY  +++G+C  G++  A+ L + M      PDV +Y+ LING  ++ + EE  
Sbjct: 298 VVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGF 357

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            +  EM   G K            P + T N+ +    K G + EV +    +E S C  
Sbjct: 358 KLIEEMEGRGMK------------PNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLP 405

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            +  +N+LI   CK G  + A  L +++  K L  D V  N ++ AL +E ++ + + LL
Sbjct: 406 DIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLL 465

Query: 338 LSMEENGCALDVDTFNTLMISFLQKE 363
            S    G  +D  ++ TL+I + + E
Sbjct: 466 CSARRRGYFVDEVSYGTLIIGYFKHE 491


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 163/353 (46%), Gaps = 51/353 (14%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           +   I+R  +P N  TFN  I G C  G +  A  +++ +  +G  PN+ T +TLI G  
Sbjct: 188 YKEMIKRRIQP-NLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHC 246

Query: 71  RTGNMNLTLK----LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           + G+     +    L + + N +        PN   + +LIDG CKD  V   K+ F EM
Sbjct: 247 KKGSAGKMYRADAILKEMLANKIC-------PNEITFNTLIDGFCKDENVLAAKNAFEEM 299

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           +                           ++GL P I TY  L+NG    GK++ AIAL+D
Sbjct: 300 Q---------------------------RQGLKPNIVTYNSLINGLSNNGKLDEAIALWD 332

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M   G  P++ +++ LING+CK   ++EA            +K+F+++   ++VP   T
Sbjct: 333 KMVGLGLKPNIVTFNALINGFCKKKMIKEA------------RKLFDDIAEQDLVPNAIT 380

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  ID  CK G + E   L  ++        V  +N LI G C+      A +L N++ 
Sbjct: 381 FNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEME 440

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              L ADVV YNILI    K+G+  K   LL  M   G   +  T+NTLM  +
Sbjct: 441 NYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGY 493



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 165/340 (48%), Gaps = 45/340 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N++TFN+LI GFC + N+  A    ++M   G +PN+ T ++LI GL   G ++  + L 
Sbjct: 272 NEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALW 331

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            +MV G+G      KPN+  + +LI+G CK +++                          
Sbjct: 332 DKMV-GLG-----LKPNIVTFNALINGFCKKKMIK------------------------- 360

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
             EA +L + + ++ L P   T+  +++ +C  G +    AL +SM  +G  P+V +Y+ 
Sbjct: 361 --EARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNC 418

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI G C+N NV  A            KK+ NEM+   +  +  T NI I G CK+G   +
Sbjct: 419 LIAGLCRNQNVRAA------------KKLLNEMENYELKADVVTYNILIGGWCKDGEPSK 466

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             +L   +     +     +N+L+ G C  G  + A ++  ++  +   A+VV YN+LI 
Sbjct: 467 AEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIK 526

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              K G+++  N LL  M E G   +  T++ + +  L+K
Sbjct: 527 GFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVRLEMLEK 566



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 159/350 (45%), Gaps = 49/350 (14%)

Query: 11  FGSFIRRCYRP-LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           F S +    RP  N +  + L+  +     I  A ++ +++  +G + ++ +C+ L++ L
Sbjct: 116 FHSLLLGGDRPCANALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSAL 175

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
            +         +++EM+          +PN+  +   I+GLCK   +++ +D+  ++K  
Sbjct: 176 VKGNETGEMQYVYKEMIKRR------IQPNLTTFNIFINGLCKAGKLNKAEDVIEDIK-- 227

Query: 130 GINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC---LVGKVNVAIALFD 186
                                      G +P I TY  L++G+C     GK+  A A+  
Sbjct: 228 -------------------------AWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILK 262

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M      P+  +++ LI+G+CK+ NV  A N   EM   G K            P   T
Sbjct: 263 EMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLK------------PNIVT 310

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  I+GL  NG + E + L+  +     +  +  FN+LI G CK  + + A +LF+ ++
Sbjct: 311 YNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIA 370

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++LV + + +N +I A  K G +++   L  SM + G   +V T+N L+
Sbjct: 371 EQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLI 420


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 180/368 (48%), Gaps = 37/368 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + F+ L++ +     +R+  +  + + + G   ++  C++L+ GL + G ++L  +++
Sbjct: 183 NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 242

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           QE+V       G+ + NV+    +I+ LCK++ ++ TK    +M++KG     +  NTL+
Sbjct: 243 QEVVR-----SGV-QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 296

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C++  L EA  L++ M  +GL P +FTY  ++NG C  GK   A  + D M + G  
Sbjct: 297 NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 356

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PD  +Y++L+   C+N N+ +A  +  EM   G                         K 
Sbjct: 357 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 416

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F +MK   + P+     I I G C+NG + E +++   +    C L V  +N+++ G CK
Sbjct: 417 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK 476

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
             +   A ELF +++ + +  D   +  LI+   K+G + K   L   M +     DV T
Sbjct: 477 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 536

Query: 352 FNTLMISF 359
           +NTL+  F
Sbjct: 537 YNTLIDGF 544



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 181/370 (48%), Gaps = 27/370 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T K L A       ++    P +  T+N L+   C   N+ DA ++  +M + G  P++ 
Sbjct: 337 TGKYLRAKGVLDEMLKIGMSP-DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLV 395

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           +   LI  L + G ++  LK  ++M N      G+   NV  Y  LI G C++ ++ +  
Sbjct: 396 SFSALIGLLSKNGCLDQALKYFRDMKNA-----GLAPDNVI-YTILIGGFCRNGVMSEAL 449

Query: 121 DLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            +  EM ++G     +  NT+L   CK+  L EA+ L   M +RG+ P  +T+T L+NGY
Sbjct: 450 KVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGY 509

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
              G +N A+ LF+ M ++   PDV +Y+ LI+G+CK   +E+              +++
Sbjct: 510 SKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV------------NELW 557

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           N+M    + P   +  I I+G C  G V E   L+  +     E  +   N++++G C+ 
Sbjct: 558 NDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRA 617

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G    A E  + +  K +V D + YN LI+   KE  + +   L+  ME +G   DV T+
Sbjct: 618 GNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITY 677

Query: 353 NTLMISFLQK 362
           N ++  F ++
Sbjct: 678 NVILNGFSRQ 687



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 168/369 (45%), Gaps = 37/369 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N  T N +I   C    I +    +  M   G  P+V T +TLI    R G +    +L
Sbjct: 252 VNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFEL 311

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
              M +G G      KP VF Y ++I+GLCK     + K +  EM   G++ +T      
Sbjct: 312 MDSM-SGKG-----LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 365

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+   +++A R+ + M  +G+ P + +++ L+      G ++ A+  F  M   G 
Sbjct: 366 LVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 425

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KK 230
            PD   Y++LI G+C+N  + EA+ V  EM              ILNG           +
Sbjct: 426 APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADE 485

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F EM    V P+ +T    I+G  K+G++ + + LF  +   N +  V  +N+LI G C
Sbjct: 486 LFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFC 545

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K    E  +EL+N +  + +  + ++Y ILI+     G + +   L   M E G    + 
Sbjct: 546 KGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATII 605

Query: 351 TFNTLMISF 359
           T NT++  +
Sbjct: 606 TCNTIVKGY 614



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 163/363 (44%), Gaps = 72/363 (19%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+F++LI      G +  A +  + M   G  P+      LI G  R G M+  LK+  E
Sbjct: 395 VSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDE 454

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL-- 137
           M+    + G +   +V  Y ++++GLCK++++ +  +LF EM ++G+  +     TL+  
Sbjct: 455 ML----EQGCVL--DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 508

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K   + +A  L E+M+QR L P + TY  L++G+C   ++     L++ M  +   P+
Sbjct: 509 YSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 568

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
             SY +LINGYC    V EA  +  EM+  GF+                       +  +
Sbjct: 569 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 628

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            M L  +VP+  T N  I+G  K  ++                                 
Sbjct: 629 NMLLKGIVPDGITYNTLINGFIKEENM--------------------------------- 655

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A  L NK+    L+ DV+ YN++++   ++G++++   ++L M E G   D  T+ 
Sbjct: 656 --DRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYT 713

Query: 354 TLM 356
           +L+
Sbjct: 714 SLI 716



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 26/250 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT+N+++ G C E  + +A +L  +M   G  P+  T  TLI G  + GNMN  + L
Sbjct: 462 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 521

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            + M+          KP+V  Y +LIDG CK   +++  +L+ +M  + I  N +     
Sbjct: 522 FEMMIQRN------LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGIL 575

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C    + EA RL + M+++G    I T   ++ GYC  G    A     +M  KG 
Sbjct: 576 INGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGI 635

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PD  +Y+ LING+ K  N++ A              + N+M+   ++P+  T N+ ++G
Sbjct: 636 VPDGITYNTLINGFIKEENMDRAF------------ALVNKMENSGLLPDVITYNVILNG 683

Query: 254 LCKNGHVLEV 263
             + G + E 
Sbjct: 684 FSRQGRMQEA 693



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 108/246 (43%), Gaps = 49/246 (19%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF +LI G+  +GN+  A  L + M     +P+V T +TLI G  +   M    +L  +M
Sbjct: 501 TFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 560

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
           ++       IY PN   YG LI+G C    V +   L+ EM +KG  A     NT++   
Sbjct: 561 ISRR-----IY-PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGY 614

Query: 138 CKKTKLVEANRLLELMMQRG-----------------------------------LNPVI 162
           C+    V+A+  L  M+ +G                                   L P +
Sbjct: 615 CRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDV 674

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            TY  +LNG+   G++  A  +   M  +G  PD  +Y+ LING+    N++EA  V  E
Sbjct: 675 ITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDE 734

Query: 223 MILNGF 228
           M+  GF
Sbjct: 735 MLQRGF 740



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 16/189 (8%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           RR Y   N +++  LI G+C  G + +A +L  +M   G    + TC+T++ G  R GN 
Sbjct: 563 RRIYP--NHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN- 619

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----- 130
              +K  + + N +    GI  P+   Y +LI+G  K+  +D+   L  +M++ G     
Sbjct: 620 --AVKADEFLSNML--LKGIV-PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDV 674

Query: 131 INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           I  N +L    ++ ++ EA  ++  M++RG+NP   TYT L+NG+     +  A  + D 
Sbjct: 675 ITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDE 734

Query: 188 MARKGFMPD 196
           M ++GF+PD
Sbjct: 735 MLQRGFVPD 743



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 126/280 (45%), Gaps = 24/280 (8%)

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTLL 137
           L+L Q  ++ +      +K ++  + ++I  L + R +   + + + M +  G++     
Sbjct: 111 LQLGQRFIDSITSNCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVS----- 165

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
             + ++VE+  L+      G NP++F    L+  Y    K+      F  +  KG    +
Sbjct: 166 --RVEIVES--LVLTYGNCGSNPLVFDL--LVRTYVQARKLREGCEAFRVLKSKGLCVSI 219

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            + + L+ G  K   V+ A  + +E++ +G +         NV    +T NI I+ LCKN
Sbjct: 220 NACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQ--------VNV----YTLNIMINALCKN 267

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             +         +E       V  +N+LI   C+ G+ E A EL + +S K L   V  Y
Sbjct: 268 QKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTY 327

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           N +I+ L K G+  +   +L  M + G + D  T+N L++
Sbjct: 328 NAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLV 367



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%)

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           NSL+ G  K G  ++A E++ ++    +  +V   NI+I+AL K  +I+     L  MEE
Sbjct: 223 NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 282

Query: 343 NGCALDVDTFNTLMISFLQK 362
            G   DV T+NTL+ ++ ++
Sbjct: 283 KGVFPDVVTYNTLINAYCRQ 302


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 171/391 (43%), Gaps = 85/391 (21%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ- 83
           +TFN++I G C  G + +A ++  KM   GC P+  T  TLI G  +  N+    K+   
Sbjct: 508 ITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 567

Query: 84  ----------EMVNGMGDFGGIYK--------------------PNVFCYGSLIDGLCKD 113
                     EM N +    G++K                    PN+  YG+LIDG CK+
Sbjct: 568 MEREXISPSIEMYNSL--ISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKE 625

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKT--------KLVEANRLLELMMQRG-------- 157
            ++D+    + EM + G++AN ++C           ++ EAN L++ M+  G        
Sbjct: 626 GMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF 685

Query: 158 ------------------------LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                                   L P    Y   + G C  GKV+ A   F  ++ KGF
Sbjct: 686 LKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGF 745

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PD F+Y  LI+GY    NV+EA  +  EM+  G            +VP   T N  I+G
Sbjct: 746 VPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRG------------LVPNIVTYNALING 793

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK+ +V     LF  L        V  +N+LI G CK G  + A +L +K+  + +   
Sbjct: 794 LCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPS 853

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           VV Y+ LI+ L K G I++   LL  M + G
Sbjct: 854 VVTYSALINGLCKHGDIERSMKLLNQMIKAG 884



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 169/366 (46%), Gaps = 38/366 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCR-PNVTTCDTLITGLRRTGNMNLTLKL 81
           N VT+  LIKG+C +  + +A ++++ M       P+      LI G  RTG ++  ++L
Sbjct: 295 NVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRL 354

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL 136
             EM+  +G      K N+F   SLI+G CK   + + + +   M D  +       NTL
Sbjct: 355 LDEMLR-LG-----LKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 408

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   C++    EA  L + M+Q G+ P + TY  LL G C VG  + A+ ++  M + G 
Sbjct: 409 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGV 468

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK----------------------- 230
            PD   YS L++G  K  N E A  + ++++  GF K                       
Sbjct: 469 APDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEE 528

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           IF++MK     P+  T    IDG CK  +V +  ++   +E       +E++NSLI G  
Sbjct: 529 IFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLF 588

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K       ++L  ++  + L  ++V Y  LI    KEG + K       M ENG + ++ 
Sbjct: 589 KSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANII 648

Query: 351 TFNTLM 356
             +T++
Sbjct: 649 ICSTMV 654



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 33/342 (9%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           ++  FC +G + +A+  VKKM   G  PN+ T  +LI G    G++        E   G+
Sbjct: 232 MVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDV--------EAAKGV 283

Query: 90  GDF---GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLL---- 137
             F    G+ + NV  Y  LI G CK   +D+ + +   M+++        A  +L    
Sbjct: 284 LKFMSEKGVSR-NVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGY 342

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+  K+ +A RLL+ M++ GL   +F    L+NGYC  G+++ A  +   M      PD 
Sbjct: 343 CRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDS 402

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           +SY+ L++GYC+  +  EA N+  +M+  G +            P   T N  + GLC+ 
Sbjct: 403 YSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE------------PTVLTYNTLLKGLCRV 450

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G   + ++++  +           +++L+ G  K   FE AS L+  +  +      + +
Sbjct: 451 GAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITF 510

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N +I  L K G++ +   +   M++ GC+ D  T+ TL+  +
Sbjct: 511 NTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGY 552



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 170/374 (45%), Gaps = 51/374 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ ++K +  +G  ++A  +   M   G  P++ +C++L+  L + G  +    ++Q+M+
Sbjct: 159 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 218

Query: 87  N---------------------GMGDFGGIYK--------PNVFCYGSLIDGLCKDRLVD 117
                                  + +  G  K        PN+  Y SLI+G      V+
Sbjct: 219 RVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVE 278

Query: 118 QTKDLFMEMKDKGINAN----TLL----CKKTKLVEANRLLELMMQR-GLNPVIFTYTPL 168
             K +   M +KG++ N    TLL    CK+ K+ EA ++L  M +   L P    Y  L
Sbjct: 279 AAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVL 338

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           ++GYC  GK++ A+ L D M R G   ++F  + LINGYCK   + EA  V   M+    
Sbjct: 339 IDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMV---- 394

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                     N+ P++++ N  +DG C+ GH  E   L   +     E  V  +N+L++G
Sbjct: 395 --------DWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKG 446

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C+ G F+ A ++++ +    +  D V Y+ L+  L K    +  + L   +   G    
Sbjct: 447 LCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKS 506

Query: 349 VDTFNTLMISFLQK 362
             TFNT MIS L K
Sbjct: 507 RITFNT-MISGLCK 519



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 167/417 (40%), Gaps = 95/417 (22%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL- 81
           +  ++N+L+ G+C EG+  +A  L  KM   G  P V T +TL+ GL R G  +  L++ 
Sbjct: 401 DSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIW 460

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           H  M  G+        P+   Y +L+DGL K    +    L+ ++  +G     I  NT+
Sbjct: 461 HLMMKXGVA-------PDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTM 513

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR--- 190
              LCK  K+VEA  + + M   G +P   TY  L++GYC    V  A  +  +M R   
Sbjct: 514 ISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXI 573

Query: 191 --------------------------------KGFMPDVFSYSVLINGYCKNFNVEEAMN 218
                                           +G  P++ +Y  LI+G+CK   +++A +
Sbjct: 574 SPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFS 633

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL---------FPT 269
              EM  NG           N++     C+  + GL + G + E   L         FP 
Sbjct: 634 SYFEMTENGLS--------ANII----ICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD 681

Query: 270 LEI-------------------SNCELFVE----IFNSLIRGCCKFGIFEIASELFNKLS 306
            E                     +C+ F+     ++N  I G CK G  + A   F+ LS
Sbjct: 682 HECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLS 741

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            K  V D   Y  LIH     G + +   L   M   G   ++ T+N L+    + E
Sbjct: 742 LKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSE 798



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 14/201 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N++ +N  I G C  G + DA +    ++  G  P+  T  TLI G    GN++   +L 
Sbjct: 713 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLR 772

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
            EM+       G+  PN+  Y +LI+GLCK   VD+ + LF ++  KG     +  NTL+
Sbjct: 773 DEMLRR-----GLV-PNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLI 826

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   +  A +L + M++ G++P + TY+ L+NG C  G +  ++ L + M + G  
Sbjct: 827 DGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVD 886

Query: 195 PDVFSYSVLINGYCKNFNVEE 215
             +  Y  L+ G  K  N  E
Sbjct: 887 SKLIEYCTLVQGGFKTSNYNE 907



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 24/252 (9%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL--VEANRLLELM 153
           ++PNV  Y  L+  L + R+ D+T+    ++ D        LCK      V  + L+ + 
Sbjct: 98  FRPNVKSYCKLVHILSRGRMYDETRAYLNQLVD--------LCKFKDRGNVIWDELVGVY 149

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
            +   +P +F    +L  Y   G    A+ +FD+M + G +P + S + L+N   KN   
Sbjct: 150 REFAFSPTVFDM--ILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGET 207

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
             A  V ++MI  G            +VP+ F  +I ++  CK+G V E       +E  
Sbjct: 208 HTAHYVYQQMIRVG------------IVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENL 255

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             E  +  ++SLI G    G  E A  +   +S K +  +VV Y +LI    K+ ++ + 
Sbjct: 256 GVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 315

Query: 334 NYLLLSMEENGC 345
             +L  M+E   
Sbjct: 316 EKVLRGMQEEAA 327


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 169/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 102 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 161

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 162 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 206

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+  AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 207 ------------------SKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 248

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 249 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK------------P 296

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           + FT    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 297 DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKML 356

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++++   K+G + K + LL  M+ +G A  V T+N LM
Sbjct: 357 REMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 410



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 159/344 (46%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 56  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 115

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 116 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 169

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 170 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGV 229

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK G
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNTLIYGLCKKG 277

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 278 DLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT 337

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 338 ALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKK 381



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 15/213 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+ GA   F   + +   P N VTF +LI G C  G +  A ++ K+M +    P++ T
Sbjct: 207 SKMDGANGLFDEMLVKGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLIT 265

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI GL + G+    LK   ++++ M   G   KP+ F Y +LIDG CK+  +D   +
Sbjct: 266 YNTLIYGLCKKGD----LKQAHDLIDEMSMKG--LKPDKFTYTTLIDGCCKEGDLDTAFE 319

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
               M  + I  + +        LC++ + V+A ++L  M+  GL P   TYT ++N +C
Sbjct: 320 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFC 379

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             G V     L   M R G  P V +Y+VL+NG
Sbjct: 380 KKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 182/372 (48%), Gaps = 39/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-LTLKL 81
           N   FN     +   G I  A  +  KM   G  P+  +   LI  L + G ++   +K 
Sbjct: 377 NHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKF 436

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           +Q +  G+        P++  + SL+ GLC     ++ ++LF EM + GI+ N +     
Sbjct: 437 NQMINEGV-------TPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTI 489

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+ +++E  RL++ +   G+ P + +Y  L++G+CL G ++ A  L + M   G 
Sbjct: 490 LCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGL 549

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------------KKIFNEMK- 236
            PD FSY+ L++GYCK   ++ A +  R+M+ NG                  K F+E K 
Sbjct: 550 KPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKE 609

Query: 237 -LCNVV-----PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
              N++      + +T NI ++GLCK+  V E +++F  L     +L +  FN +I    
Sbjct: 610 LYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALL 669

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  E A +LF  +    LV +VV Y +++  L +EG +++ + L  +ME+NG A +  
Sbjct: 670 KGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQ 729

Query: 351 TFNTLMISFLQK 362
             N L+   L +
Sbjct: 730 MLNALVRRLLHR 741



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 158/356 (44%), Gaps = 25/356 (7%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITG 68
           AFG  ++  +R ++ +  N L+ G C    + +A   L+++M   GC P+  + + L+ G
Sbjct: 116 AFGLILKTGWR-MDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKG 174

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +   D      PNV  Y ++I+G   +  VD+  +LF+EM D
Sbjct: 175 LCNEKRAEEALELLHMMAD---DQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMD 231

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  + +        LCK      A  + + M+  G+ P I TY  L++GY  +GK   
Sbjct: 232 RGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKE 291

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
            + + + M+  G  P+  +Y  L+N  CKN    EA      MI  G K           
Sbjct: 292 VVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIK----------- 340

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P   T  I + G    G + E+ +L   +  +       IFN       K GI + A +
Sbjct: 341 -PSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMD 399

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +FNK+  + L  D V+Y  LI AL K G++         M   G   D+  F++L+
Sbjct: 400 IFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLV 455



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 161/374 (43%), Gaps = 56/374 (14%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N ++ G C    + +A ++ + + + G + N+ T + +I  L + G     + L   +
Sbjct: 625 TYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAI 684

Query: 86  -VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
             NG+         NV  Y  +++ L ++  +++   LF  M+  G   N+         
Sbjct: 685 PANGL-------VQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRR 737

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL-------------------------NG 171
           L  +  +  A   L  + +R  +    T + L+                         N 
Sbjct: 738 LLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANS 797

Query: 172 YCLVGK---VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
             L+ K   ++ A +LF  M  KG  PDV +Y+ +++G  +     EA  +   MI    
Sbjct: 798 SALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMI---- 853

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
               N     N+    +T NI ++GLCK+  V E  ++F +L     +L +  FN +I  
Sbjct: 854 ----NSRTQMNI----YTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGA 905

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K G  E A +LF  +    LV DVV Y ++   L +EG +++ + L L+ME++G  LD
Sbjct: 906 LLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLD 965

Query: 349 VDTFNTLMISFLQK 362
               N L+   LQ+
Sbjct: 966 SRLLNALVRRLLQR 979



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 150/368 (40%), Gaps = 48/368 (13%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCR----------PNVTTCDTLITGL 69
           RP + V FN L+         R  +   + + +   R          PN  T   LI   
Sbjct: 45  RPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIKVAPNRCTYSILIGCF 104

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            R G++           +G   FG I    ++ +      L++GLC  + V +  D+ ++
Sbjct: 105 CRMGHLE----------HGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQ 154

Query: 126 -MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGL---NPVIFTYTPLLNGYC 173
            M + G   +T+        LC + +  EA  LL +M    +    P + +Y+ ++NG+ 
Sbjct: 155 RMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFF 214

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G+V+    LF  M  +G  PDV +Y+ +I+G CK    + A  V ++MI NG K    
Sbjct: 215 TEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVK---- 270

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P   T N  I G    G   EV+ +   +     +     + SL+   CK G
Sbjct: 271 --------PNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNG 322

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A   F+ +  K +   V  Y I++H    +G + + + LL  M  NG + +   FN
Sbjct: 323 RCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFN 382

Query: 354 TLMISFLQ 361
               ++ +
Sbjct: 383 IFFSAYAK 390



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 141/347 (40%), Gaps = 29/347 (8%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N VT+  +++    EG++ +   L   M   G  PN    + L+  L           LH
Sbjct: 692  NVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL-----------LH 740

Query: 83   QEMVNGMGDFGGIYKPNVFCYGS-----LIDGLCKDRLVDQTKDLFMEMKD-KGINANTL 136
            +  ++  G +        F   +     LI     D      K L  + +     N++ L
Sbjct: 741  RGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSAL 800

Query: 137  LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            + K  ++ +A  L   M+ +GL P + TY  +L+G    G+ + A  L+ SM       +
Sbjct: 801  IKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMN 860

Query: 197  VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            +++Y++++NG CK+  V+EA  + + +   G +         N++    T NI I  L K
Sbjct: 861  IYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQ--------LNII----TFNIMIGALLK 908

Query: 257  NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             G   + M+LF  +  +     V  +  +     + G  E    LF  +       D   
Sbjct: 909  GGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRL 968

Query: 317  YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             N L+  L + G I +    L  ++E   +L+  T + L+  F + E
Sbjct: 969  LNALVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELISLFSRGE 1015



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 106/268 (39%), Gaps = 48/268 (17%)

Query: 19   YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
            YR LN+   ++LIK       I DA  L ++M   G  P+V T +T++ GL +TG  +  
Sbjct: 789  YRILNEANSSALIK---KARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEA 845

Query: 79   LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138
             +L+  M+N           N++ Y  +++GLCK   VD+   +F  +  KG+  N    
Sbjct: 846  KELYLSMINSRTQM------NIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLN---- 895

Query: 139  KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
                                   I T+  ++      G+   A+ LF ++   G +PDV 
Sbjct: 896  -----------------------IITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVV 932

Query: 199  SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            +Y ++            A N+  E  L  F  +F  M+      ++   N  +  L + G
Sbjct: 933  TYRLV------------AENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRG 980

Query: 259  HVLEVMELFPTLEISNCELFVEIFNSLI 286
             +         L+  N  L     + LI
Sbjct: 981  DISRAGAYLSKLDEKNFSLEASTTSELI 1008


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 162/338 (47%), Gaps = 26/338 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI G C +GN+  A  L  KM   G  PN  T   L+ G  + G      +++
Sbjct: 192 NVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMY 251

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M        GI  PN + Y  LI   C D +VD+   +F EM++KGI    +      
Sbjct: 252 ENMKRS-----GIV-PNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILI 305

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  K  EA +L+  + + GL+P I TY  L+NG+C V K++ A+ LF+ +   G  
Sbjct: 306 GGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLS 365

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P + +Y+ LI GY K  N+  A+++ +EM            + C + P   T  I ID  
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEM-----------EERC-IAPSKVTYTILIDAF 413

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            +  H  +  E+   +E S     V  ++ L+ G C  G  + AS+LF  L   +L  + 
Sbjct: 414 ARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNS 473

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           V YN +IH   KEG   +   LL  M ++G   +V +F
Sbjct: 474 VIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASF 511



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 153/336 (45%), Gaps = 26/336 (7%)

Query: 36  MEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGG 94
           + G I  +  L    A F  C       DT++     + + +  L     M++     G 
Sbjct: 65  ISGRIPSSLMLQLTQAHFTPCSTYTPLYDTVVNAYVHSHSTDQALTFLHHMIHE----GH 120

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-NANTL------LCKKTKLVEAN 147
           +   N F   +L+  L +    D+   +F E+K K + +A +        C+    V+  
Sbjct: 121 VPLSNTF--NNLLCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGF 178

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           RLL ++ + GL+P +  YT L++G C  G V +A  LF  M R G +P+  +YSVL+NG+
Sbjct: 179 RLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGF 238

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
            K         + RE    GF +++  MK   +VP  +  N  I   C +G V +  ++F
Sbjct: 239 FKQ-------GLQRE----GF-QMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVF 286

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +        V  +N LI G C+   F  A +L +K++   L  ++V YNILI+     
Sbjct: 287 AEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDV 346

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            ++     L   ++ +G +  + T+NTL+  + + E
Sbjct: 347 RKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVE 382



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 122/267 (45%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTL------LCKKTKLVEANRL 149
           PNV  Y +LIDG CKD  V   K+LF +M   G+  N +T         K+    E  ++
Sbjct: 191 PNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQM 250

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            E M + G+ P  + Y  L++ YC  G V+ A  +F  M  KG    V +Y++LI G C+
Sbjct: 251 YENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCR 310

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                EA+            K+ +++    + P   T NI I+G C    +   + LF  
Sbjct: 311 GKKFGEAV------------KLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQ 358

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           L+ S     +  +N+LI G  K      A +L  ++  + +    V Y ILI A  +   
Sbjct: 359 LKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNH 418

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
            +K   +   ME++G   DV T++ L+
Sbjct: 419 TEKACEMHSLMEKSGLVPDVYTYSVLL 445



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 14/227 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N LI GFC    +  A +L  ++ + G  P + T +TLI G  +  N+   L L 
Sbjct: 332 NIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLV 391

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM            P+   Y  LID   +    ++  ++   M+  G+  +        
Sbjct: 392 KEMEER------CIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLL 445

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC    + EA++L + + +  L P    Y  +++GYC  G    A+ L + M + G +
Sbjct: 446 HGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMV 505

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           P+V S+   I   C++   +EA  +  +MI +G K   +  K+ + V
Sbjct: 506 PNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMVHKV 552



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ L+ G C+ GN+++AS+L K +     +PN    +T+I G  + G+    L+L  EM
Sbjct: 440 TYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEM 499

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           V +GM        PNV  + S I  LC+D    + + L  +M + G+  +  L K    V
Sbjct: 500 VQSGM-------VPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMVHKV 552

Query: 145 EAN 147
           + +
Sbjct: 553 KGD 555


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 183/371 (49%), Gaps = 37/371 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N  T N ++   C +G + +    + +M   G   ++ T +TL+    R G ++    L
Sbjct: 222 VNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGL 281

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTL--- 136
               V+ M   G   KP +F Y +LI+GLCK+   ++ K +  EM   G+  NA T    
Sbjct: 282 ----VDCMAGKG--LKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPM 335

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+K  + EA R+   M+QRG+ P + +++ ++  +   G++  A+A F+ M   G 
Sbjct: 336 LVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGL 395

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGF---------KK 230
           +PD   Y++LINGYC+N +V  A+ +  EM+              LNG           +
Sbjct: 396 VPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADE 455

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F EM    V P+ +T    I G CK+G++ + + LF T+ + + +  V  +N+L+ G C
Sbjct: 456 LFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFC 515

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  E A EL+  +  + +    ++++ILI+     G + +   L   M+E G    + 
Sbjct: 516 KVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLV 575

Query: 351 TFNTLMISFLQ 361
           T NT++  +L+
Sbjct: 576 TCNTIIKGYLR 586



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 175/345 (50%), Gaps = 26/345 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TFN ++   C + ++ +A ++  +M   G  P++ +  +++    R G +   L   
Sbjct: 328 NAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYF 387

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           ++M  G+G       P+   Y  LI+G C++  V     +  EM ++G     +  NTLL
Sbjct: 388 EKM-KGVG-----LVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLL 441

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+   L +A+ L + M++RG+ P  +T T L++GYC  G +  A++LF++M  +   
Sbjct: 442 NGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLK 501

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV +Y+ L++G+CK   +E+A  +  +MI    ++IF         P   + +I I+G 
Sbjct: 502 PDVVTYNTLMDGFCKVGEMEKAKELWYDMI---SREIF---------PSYISFSILINGF 549

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G V E   L+  ++    +  +   N++I+G  + G    A++  N +  + +  D 
Sbjct: 550 CSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDC 609

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + YN LI++  KE    +  +L+ +MEE G   ++ T+N ++  F
Sbjct: 610 ITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGF 654



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 162/393 (41%), Gaps = 91/393 (23%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V F+ LI+ +     +R+ S+  + +   G   ++  C+ L+  + + G ++L  K++++
Sbjct: 155 VVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYED 214

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
            V   G+   +Y  N+     +++ LCKD  +D       EM++KG+ A+          
Sbjct: 215 FVKS-GNIVNVYTLNI-----MVNALCKDGKLDNVGVYLSEMEEKGVYAD---------- 258

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                            + TY  L+N YC  G V+ A  L D MA KG  P +F+Y+ LI
Sbjct: 259 -----------------LVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALI 301

Query: 205 NGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNE------- 234
           NG CK  + E A  V  EM+  G                        +++FNE       
Sbjct: 302 NGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVV 361

Query: 235 ----------------------------MKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
                                       MK   +VP+T    I I+G C+N  V   +++
Sbjct: 362 PDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKM 421

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +    C + V  +N+L+ G C+  + + A ELF ++  + +  D      LIH   K
Sbjct: 422 RNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCK 481

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +G + K   L  +M       DV T+NTLM  F
Sbjct: 482 DGNMTKALSLFETMTLRSLKPDVVTYNTLMDGF 514



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 107/246 (43%), Gaps = 49/246 (19%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T  +LI G+C +GN+  A  L + M     +P+V T +TL+ G  + G M    +L  +M
Sbjct: 471 TLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDM 530

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC------- 138
           ++       I+ P+   +  LI+G C   LV +   L+ EMK+KGI    + C       
Sbjct: 531 ISR-----EIF-PSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGY 584

Query: 139 -KKTKLVEANRLLELMM-----------------------------------QRGLNPVI 162
            +   L +AN  L  M+                                   +RGL P +
Sbjct: 585 LRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNL 644

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            TY  +L G+   G++  A  +   M  KG  PD  +Y+ LINGY    N++EA  V  E
Sbjct: 645 VTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDE 704

Query: 223 MILNGF 228
           M+  GF
Sbjct: 705 MLQRGF 710



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 14/180 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           ++F+ LI GFC  G + +A +L  +M   G +P + TC+T+I G  R GN++       +
Sbjct: 540 ISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKA----ND 595

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            +N M   G    P+   Y +LI+   K+   D+   L   M+++G+  N +        
Sbjct: 596 FLNTMISEG--VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGG 653

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             +  ++ EA  +L  M+ +G+NP   TYT L+NGY     +  A  + D M ++GF+PD
Sbjct: 654 FSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 12/202 (5%)

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           +  +  L+  Y    K+      F  + ++GF   + + + L+    K   V+ A  V  
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
           + + +G           N+V   +T NI ++ LCK+G +  V      +E       +  
Sbjct: 214 DFVKSG-----------NIV-NVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVT 261

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N+L+   C+ G+   A  L + ++ K L   +  YN LI+ L KEG  ++   +L  M 
Sbjct: 262 YNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEML 321

Query: 342 ENGCALDVDTFNTLMISFLQKE 363
             G   +  TFN +++   +KE
Sbjct: 322 GVGLCPNAATFNPMLVESCRKE 343



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+++ GF   G +++A  ++ KM   G  P+ +T  +LI G     NM    ++H
Sbjct: 643 NLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVH 702

Query: 83  QEMVN 87
            EM+ 
Sbjct: 703 DEMLQ 707



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 35/141 (24%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-LTL 79
           P + +T+N+LI  F  E N   A  L+  M   G  PN+ T + ++ G  R G M    +
Sbjct: 606 PPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEM 665

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139
            LH+ +  G+        P+   Y SLI+G                              
Sbjct: 666 VLHKMIDKGI-------NPDKSTYTSLING---------------------------YVS 691

Query: 140 KTKLVEANRLLELMMQRGLNP 160
           K  + EA R+ + M+QRG  P
Sbjct: 692 KDNMKEAFRVHDEMLQRGFVP 712


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 166/354 (46%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EG+IR A  +   +  +G RP+V + 
Sbjct: 104 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSF 163

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M        G+ +P+V+ Y  LI+GLCK+         
Sbjct: 164 NTLMNGYIRLGDLDEGFRLKSAM-----HASGV-QPDVYTYSVLINGLCKE--------- 208

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 209 ------------------SKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAM 250

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 251 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK------------P 298

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G +  A ++ 
Sbjct: 299 DKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVL 358

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G +   + LL  M+ +G    V T+N LM
Sbjct: 359 REMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  + +     L    ++E++
Sbjct: 58  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKLKYFKLVWGFYEEIL 117

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 118 ECG------YPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYI 171

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 172 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGV 231

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CK+  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 232 TFTTLIDGHCKSGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 279

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  E A E   ++  +N+  D VAY 
Sbjct: 280 DLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYT 339

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 340 ALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKK 383



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 229 NGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD----LKQA 284

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++++ M   G   KP+   Y +LIDG CK+  ++   +    M  + I  + +      
Sbjct: 285 HDLIDEMSMKG--LKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALI 342

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + ++A ++L  M+  GL P   TYT ++N +C  G V     L   M R G +
Sbjct: 343 SGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHV 402

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 403 PSVVTYNVLMNG 414


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 167/343 (48%), Gaps = 31/343 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + +  LI        + +A +L+++M   GC P+V T + +I GL + G ++   KLH
Sbjct: 234 NSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLH 293

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK--- 139
             M+  + DF      +    G L+ GLC+   VD+ +     M  K  N NT+L     
Sbjct: 294 DRML--LRDFTA----DALIQGYLMHGLCRMGKVDEAR----AMLSKIPNPNTVLYNTLI 343

Query: 140 -----KTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                  +  EA  LL + M+  G  P  FT+  +++G C  G +  A+   D M +KGF
Sbjct: 344 NGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGF 403

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V +Y++LI+G+CK  + EEA             K+ N M    +   T   N  I  
Sbjct: 404 EPNVITYTILIDGFCKQGHFEEA------------SKVVNSMSAKGLSLNTVGYNCLIGA 451

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK+G + + ++++  +    C+  +  FNSLI G CK    E A  L+  +  + ++A+
Sbjct: 452 LCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIAN 511

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            V YN LIHA  +   I++ + L+  M   GC LD  T+N L+
Sbjct: 512 TVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLI 554



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 160/347 (46%), Gaps = 31/347 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF  ++K FCM   +  A  L++ M   GC PN      LI  L     +N  +KL +EM
Sbjct: 202 TFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEM 261

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
              MG      +P+V  +  +I GLCK   + +   L   M  +   A+ L        L
Sbjct: 262 FL-MG-----CEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGL 315

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL-FDSMARKGFMPD 196
           C+  K+ EA      M+ +  NP    Y  L+NGY + G+   A  L + +M   GF PD
Sbjct: 316 CRMGKVDEA----RAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPD 371

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            F+++++I+G CK   +  A+    EM+  GF+            P   T  I IDG CK
Sbjct: 372 AFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFE------------PNVITYTILIDGFCK 419

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            GH  E  ++  ++      L    +N LI   CK G  + A +++ ++S K    D+  
Sbjct: 420 QGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYT 479

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +N LI+ L K  ++++   L   M   G   +  T+NTL+ +FL+ E
Sbjct: 480 FNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLE 526



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 166/371 (44%), Gaps = 38/371 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           N V +N+LI G+ + G   +A  L+ K M   G  P+  T + +I GL + G +   L+ 
Sbjct: 335 NTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEF 394

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EMV         ++PNV  Y  LIDG CK    ++   +   M  KG++ NT+     
Sbjct: 395 LDEMVKKG------FEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCL 448

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  K+ +A ++   M  +G  P I+T+  L+ G C   K+  A+ L+  M  +G 
Sbjct: 449 IGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGV 508

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM----------ILNGFKK------------- 230
           + +  +Y+ LI+ + +   +++A  +  EM            NG  K             
Sbjct: 509 IANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLG 568

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +  +M    + P   +CNI I+  C+ G V + ++    +        +  +NSLI G C
Sbjct: 569 LIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLC 628

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G F+ A  LFN L  K +  D V YN LI     EG       LL     NG   +  
Sbjct: 629 KMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEI 688

Query: 351 TFNTLMISFLQ 361
           T++ L+  F++
Sbjct: 689 TWSILINYFVK 699



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 134/287 (46%), Gaps = 28/287 (9%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P V+ +G ++   C    VD    L  +M   G   N++        L +  ++ EA +L
Sbjct: 198 PTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKL 257

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           LE M   G  P + T+  +++G C  G+++ A  L D M  + F  D      L++G C+
Sbjct: 258 LEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCR 317

Query: 210 NFNVEEAM----------NVSREMILNGF----------KKIFNEMKLCNVVPETFTCNI 249
              V+EA            V    ++NG+            ++  M +    P+ FT NI
Sbjct: 318 MGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNI 377

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            IDGLCK G+++  +E    +     E  V  +  LI G CK G FE AS++ N +S K 
Sbjct: 378 MIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKG 437

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L  + V YN LI AL K+G+I+    +   M   GC  D+ TFN+L+
Sbjct: 438 LSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLI 484



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 161/349 (46%), Gaps = 36/349 (10%)

Query: 22  LNDVTFNSLIKGF-----CMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           L D T ++LI+G+     C  G + +A  ++ K+      PN    +TLI G   +G   
Sbjct: 298 LRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPN----PNTVLYNTLINGYVVSGRFE 353

Query: 77  LTLKL-HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
               L ++ MV       G ++P+ F +  +IDGLCK   +    +   EM  KG   N 
Sbjct: 354 EAKDLLYKNMV-----IAG-FEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNV 407

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +         CK+    EA++++  M  +GL+     Y  L+   C  GK+  A+ ++  
Sbjct: 408 ITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGE 467

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M+ KG  PD+++++ LI G CKN  +EEA+ + R+M+L G            V+  T T 
Sbjct: 468 MSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEG------------VIANTVTY 515

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           N  I    +   + +  +L   +    C L    +N LI+  CK G  E    L  ++  
Sbjct: 516 NTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFG 575

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + +   + + NILI++  + G++      L  M + G   D+ T+N+L+
Sbjct: 576 EEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLI 624



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 31/345 (8%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           ++ AL      +++ + P N +T+  LI GFC +G+  +AS++V  M+  G   N    +
Sbjct: 388 LVSALEFLDEMVKKGFEP-NVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYN 446

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            LI  L + G +   L+++ EM +         KP+++ + SLI GLCK+  +++   L+
Sbjct: 447 CLIGALCKDGKIQDALQMYGEMSSKGC------KPDIYTFNSLIYGLCKNDKMEEALGLY 500

Query: 124 MEMKDKGINANTLLCKKTKLVEANRLLELMMQ----------RGLNPVIFTYTPLLNGYC 173
            +M  +G+ ANT+      L+ A   LEL+ Q          RG      TY  L+   C
Sbjct: 501 RDMLLEGVIANTV--TYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALC 558

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G     + L + M  +   P + S ++LIN +C+   V +A+   R+MI  G      
Sbjct: 559 KTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRG------ 612

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                 + P+  T N  I+GLCK G   E + LF  L+          +N+LI   C  G
Sbjct: 613 ------LTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEG 666

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +F  A +L  K      + + + ++ILI+   K     ++  +L+
Sbjct: 667 LFNDACQLLFKGVSNGFIPNEITWSILINYFVKNNSDSEQFTILM 711



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 127/266 (47%), Gaps = 33/266 (12%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            SKV+ ++ A G         LN V +N LI   C +G I+DA Q+  +M++ GC+P++ 
Sbjct: 426 ASKVVNSMSAKG-------LSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIY 478

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T ++LI GL +   M   L L+++M+       G+   N   Y +LI    +  L+ Q  
Sbjct: 479 TFNSLIYGLCKNDKMEEALGLYRDML-----LEGVIA-NTVTYNTLIHAFLRLELIQQAD 532

Query: 121 DLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L  EM+ +G     I  N L   LCK     +   L+E M    + P I +   L+N +
Sbjct: 533 KLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSF 592

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  GKVN A+     M ++G  PD+ +Y+ LING CK    +EA+N            +F
Sbjct: 593 CRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALN------------LF 640

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNG 258
           N ++   + P+  T N  I   C  G
Sbjct: 641 NGLQAKGIHPDAVTYNTLISRYCYEG 666



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 154/357 (43%), Gaps = 29/357 (8%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           ++   R LN +T + L K   +  ++  +  L +K      R  + +       + + GN
Sbjct: 49  LKHLQRSLNPITPSQLCKLLELPLDVPTSMDLFEKAGL--QRGYIHSFHVYYLLIDKLGN 106

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFC-----YGSL-IDGLCKDRLVDQTKDLFMEMKD 128
           +    K+  +++  M D G ++K ++F      YG   + G     L+D       E   
Sbjct: 107 VG-EFKMIDKLLKQMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTF 165

Query: 129 KGINA--NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           K  N     L+      V  N   + M+ RG++P ++T+  ++  +C+V +V+ A +L  
Sbjct: 166 KSYNVVLEILVAGNCPKVAPNVFYD-MLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLR 224

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M + G +P+   Y +LI+   +N  V EAM +  EM L G +            P+  T
Sbjct: 225 DMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCE------------PDVQT 272

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  I GLCK G + E  +L   + + +      I   L+ G C+ G  + A  + +K+ 
Sbjct: 273 FNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIP 332

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLL-SMEENGCALDVDTFNTLMISFLQK 362
             N     V YN LI+     G+ ++   LL  +M   G   D  TFN ++    +K
Sbjct: 333 NPN----TVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKK 385


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 172/342 (50%), Gaps = 28/342 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+N+LI GFC  G++  A QL+ +M   G  P+V T  +++  L  TGN++  ++  
Sbjct: 104 NHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYF 163

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +E V           P+   +  L+ GLCK   + + + +  EM ++GI  + +      
Sbjct: 164 RESVE--------CAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLI 215

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ EA +LLE M++R + P + TY  L+ GYC  G   +A  L + M + G  
Sbjct: 216 DGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTH 275

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV +++ LI+G+C+   +++A  V     L+  KK      LC   P   T N+ I GL
Sbjct: 276 PDVVTFNSLISGFCQKSKIDKACEV-----LHLMKK-----GLC--APNLVTYNVLISGL 323

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G   E  EL   ++       +  +NSLI   C+    E A ++ N +  + ++ D 
Sbjct: 324 CDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDG 383

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++Y  L  AL K  +  +   LL +M + G   ++ TFN+LM
Sbjct: 384 ISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLM 425



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 152/338 (44%), Gaps = 37/338 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V FN L+ G C    + +A Q++++M+  G  P+V T ++LI GL ++  M    +L 
Sbjct: 172 DSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLL 231

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + MV          +PN+  Y +LI G CK         L   M   G + + +      
Sbjct: 232 ETMVKRK------VRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLI 285

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+K+K+ +A  +L LM +    P + TY  L++G C  G+ N A  L   M  +G +
Sbjct: 286 SGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGIL 345

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG--------------------FKKIF-- 232
           PD+ +Y+ LI  +C+NF +E+A  +   M+  G                    F + F  
Sbjct: 346 PDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFAL 405

Query: 233 -NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            + M     +P  FT N  ++GLC +  + E   L   +    C+     +  L+ G CK
Sbjct: 406 LDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCK 465

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
            G  + A E+   +  + +   V +   ++H L +EG+
Sbjct: 466 AGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGK 503



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 14/200 (7%)

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            TY  L+ G+C  G +  A  L   M  +G  PDV ++S ++   C   N+  AM   RE
Sbjct: 106 ITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRE 165

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
            +                 P++   NI + GLCK   + E  ++   +        V  +
Sbjct: 166 SV--------------ECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTY 211

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           NSLI G CK    E A +L   +  + +  ++V YN LI+   K G     + L+  M +
Sbjct: 212 NSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQ 271

Query: 343 NGCALDVDTFNTLMISFLQK 362
           +G   DV TFN+L+  F QK
Sbjct: 272 SGTHPDVVTFNSLISGFCQK 291



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 99/237 (41%), Gaps = 49/237 (20%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFNSLI GFC +  I  A +++  M    C PN+ T + LI+GL   G  N   +L  E
Sbjct: 279 VTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSE 338

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT---KDLFME---------------- 125
           M     D  GI  P++  Y SLI   C++  ++Q    ++L +E                
Sbjct: 339 M-----DGRGIL-PDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVA 392

Query: 126 ----------------MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPV 161
                           M D G   N          LC   +L EA  LL +M + G +P 
Sbjct: 393 LLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPA 452

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
             TY  L+ G C  G+V+ A  +   M  +G  P V S   +++   +    + A++
Sbjct: 453 ASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALH 509


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 175/345 (50%), Gaps = 28/345 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N++I+GFC    +  A QL  +M   GC  ++ T   LI    + G M+  + L +E
Sbjct: 178 VSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKE 237

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
           M +      G+ + ++  Y SLI G C    +D+ K LF E+ ++G     I  NTL+  
Sbjct: 238 MKHK-----GL-EADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRG 291

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK  +L EA+ + E MM+RG+ P ++TYT L++G C VGK   A+ L + M +K   P+
Sbjct: 292 FCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPN 351

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+++IN  CK+  V +A+            +I   MK     P+  T N  + GLC 
Sbjct: 352 VVTYNIIINKLCKDSLVADAL------------EIVELMKKRRTRPDNITYNSLLGGLCA 399

Query: 257 NGHVLEVMELFPTL--EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            G + E  +L   +  + S  +  V  FN+LI G CK      A ++++ L  K    D+
Sbjct: 400 KGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDI 459

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V  NIL+++  K G + K   L   +  +    + DT+ T++  F
Sbjct: 460 VTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGF 504



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 175/347 (50%), Gaps = 28/347 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N+LI+GFC  G +++AS++ + M   G RPNV T   LI GL   G     L+L   
Sbjct: 283 ITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNL 342

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-----GINANTLL-- 137
           M+          +PNV  Y  +I+ LCKD LV    ++   MK +      I  N+LL  
Sbjct: 343 MLQK------DEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGG 396

Query: 138 -CKKTKLVEANRLLELMMQRG--LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            C K  L EA++LL LM++     +P + ++  L++G C   +++ A+ ++D +  K   
Sbjct: 397 LCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGA 456

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D+ + ++L+N   K+ +V +AM +        +K+I N      +VP + T    IDG 
Sbjct: 457 GDIVTTNILLNSTLKSGDVNKAMEL--------WKQISNS----KIVPNSDTYTTMIDGF 504

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G +     L   + +S     V  +N L+   CK G  + A  LF ++   +   DV
Sbjct: 505 CKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDV 564

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +++NI+I    K G IK    LL+ M   G + D+ T++ L+  FL+
Sbjct: 565 ISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLK 611



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 24/291 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I   C +  + DA ++V+ M     RP+  T ++L+ GL   G+++   KL 
Sbjct: 351 NVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLL 410

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-----GINANTLL 137
             M+           P+V  + +LI GLCK   + Q  D++  + +K      +  N LL
Sbjct: 411 YLMLKD----SSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILL 466

Query: 138 CKKTKLVEANRLLELMMQ---RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K  + N+ +EL  Q     + P   TYT +++G+C  G +NVA  L   M      
Sbjct: 467 NSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELP 526

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P VF Y+ L++  CK   +++A             ++F EM+  +  P+  + NI IDG 
Sbjct: 527 PSVFDYNCLLSSLCKKGTLDQAW------------RLFEEMQRDDSFPDVISFNIMIDGS 574

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
            K G +     L   +  +     +  ++ LI    K G  + A   F+K+
Sbjct: 575 LKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKM 625



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 12/211 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A+ +L LM++RG    ++ Y  LL G C   +   A++L   M +   MPDV SY+ +I 
Sbjct: 126 AHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIR 185

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G+C+   +E+A+ ++            NEM+         T  I ID  CK G + E M 
Sbjct: 186 GFCEGKELEKALQLA------------NEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMG 233

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L   ++    E  + ++ SLIRG C  G  +    LF+++  +      + YN LI    
Sbjct: 234 LLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFC 293

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K G++K+ + +   M E G   +V T+  L+
Sbjct: 294 KLGRLKEASEIFEFMMERGVRPNVYTYTGLI 324



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 128/265 (48%), Gaps = 43/265 (16%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKM--ATFGCRPNVTTCDTLITGLRRTG 73
           +R  RP +++T+NSL+ G C +G++ +AS+L+  M   +    P+V + + LI GL +  
Sbjct: 380 KRRTRP-DNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGN 438

Query: 74  NMNLTLKLHQEMVN--GMGDF-------------GGIYK--------------PNVFCYG 104
            ++  L ++  +V   G GD              G + K              PN   Y 
Sbjct: 439 RLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYT 498

Query: 105 SLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQR 156
           ++IDG CK  +++  K L  +M+   +  +          LCKK  L +A RL E M + 
Sbjct: 499 TMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRD 558

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
              P + ++  +++G    G +  A +L   M+  G  PD+F+YS LIN + K   ++EA
Sbjct: 559 DSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEA 618

Query: 217 MNVSREMILNGFKKIFNEMKLCNVV 241
           ++   +MI +GF+    +  +C+ V
Sbjct: 619 ISFFDKMIDSGFEP---DAHICDSV 640



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 23/243 (9%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+  +  +A  LL  M Q  L P + +Y  ++ G+C   ++  A+ L + M   G    
Sbjct: 152 LCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWS 211

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFN 233
           + ++ +LI+ +CK   ++EAM + +EM              ++ GF         K +F+
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFD 271

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           E+      P   T N  I G CK G + E  E+F  +        V  +  LI G C  G
Sbjct: 272 EVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVG 331

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A +L N +  K+   +VV YNI+I+ L K+  +     ++  M++     D  T+N
Sbjct: 332 KTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYN 391

Query: 354 TLM 356
           +L+
Sbjct: 392 SLL 394



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 93/196 (47%), Gaps = 12/196 (6%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           + + LL  +  + K   A  +   M ++GF  +V++Y++L+ G C+N    +A+++ REM
Sbjct: 109 SLSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREM 168

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
             N            +++P+  + N  I G C+   + + ++L   ++ S C   +  + 
Sbjct: 169 RQN------------SLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWG 216

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            LI   CK G  + A  L  ++  K L AD++ Y  LI      G++ +   L   + E 
Sbjct: 217 ILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLER 276

Query: 344 GCALDVDTFNTLMISF 359
           G +    T+NTL+  F
Sbjct: 277 GDSPCAITYNTLIRGF 292


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 169/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 225

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+  AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 226 ------------------SKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           + FT    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 316 DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++++   K+G + K + LL  M+ +G A  V T+N LM
Sbjct: 376 REMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 429



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 159/344 (46%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 135 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK G
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNTLIYGLCKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 297 DLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKK 400



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 15/213 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+ GA   F   + +   P N VTF +LI G C  G +  A ++ K+M +    P++ T
Sbjct: 226 SKMDGANGLFDEMLVKGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLIT 284

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI GL + G+    LK   ++++ M   G   KP+ F Y +LIDG CK+  +D   +
Sbjct: 285 YNTLIYGLCKKGD----LKQAHDLIDEMSMKG--LKPDKFTYTTLIDGCCKEGDLDTAFE 338

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
               M  + I  + +        LC++ + V+A ++L  M+  GL P   TYT ++N +C
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFC 398

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             G V     L   M R G  P V +Y+VL+NG
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 176/373 (47%), Gaps = 42/373 (11%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+ +++   C  G I DA +L  +      +P+V   + LI G+ + G + + +K
Sbjct: 211 PPDAVTYTTMVSSLCKAGKIDDARELAGRF-----KPSVPVYNALIDGMCKEGRIEVAIK 265

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TL 136
           L  EM++   D      PNV  Y  +I+ LC    V+    LF +M  +G +AN    T 
Sbjct: 266 LLGEMMDNGVD------PNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTP 319

Query: 137 LCK----KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L K    + KL EA  L +LM+Q G  P +  Y  L++G C  G +  A+ + D M R G
Sbjct: 320 LIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG 379

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----------------------- 229
            +P+V +YS+LI+G+ K+ ++  A      MI +G +                       
Sbjct: 380 CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQAN 439

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            +  +M L    P T T N FI GLC NG V   M+L   ++   C   +  +N L+   
Sbjct: 440 SLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
            +   +E A  LF ++  +NL  ++V YN +++   + G + +   L       G A D 
Sbjct: 500 FRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDS 559

Query: 350 DTFNTLMISFLQK 362
            T+NT++ ++ ++
Sbjct: 560 ITYNTMIHAYCKQ 572



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 167/347 (48%), Gaps = 31/347 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+K  C    +  A +L  +M+  GC P+  T  T+++ L + G         
Sbjct: 178 NVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGK-------- 229

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
              ++   +  G +KP+V  Y +LIDG+CK+  ++    L  EM D G++ N +      
Sbjct: 230 ---IDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCII 286

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC    +  A  L   M  RG +  I T+TPL+ G  + GK+  A+ L+  M + G  
Sbjct: 287 NSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCE 346

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V +Y+ LI+G C N ++EEA+ V  +M  +G             +P   T +I IDG 
Sbjct: 347 PNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG------------CLPNVTTYSILIDGF 394

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K+G ++   E +  +    C   V  +  ++   CK  +F+ A+ L  K++ +    + 
Sbjct: 395 AKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNT 454

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           + +N  I  L   G+++    LL  M+ +GC  ++ T+N L+ +  +
Sbjct: 455 MTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFR 501



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 156/361 (43%), Gaps = 42/361 (11%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F  +I G+   G+   A ++  ++  FGC+P V   + L+  L       +   L+  M 
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMK 171

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
                 G I  PNVF Y  L+  LCK+  VD    LF+EM +KG   + +        LC
Sbjct: 172 KD----GLI--PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLC 225

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  K+ +A  L          P +  Y  L++G C  G++ VAI L   M   G  P+V 
Sbjct: 226 KAGKIDDAREL-----AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVV 280

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------KIFNEMKLCNVV 241
           SYS +IN  C + NVE A  +  +M L G                   K++  + L  ++
Sbjct: 281 SYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLM 340

Query: 242 ------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                 P     N  I GLC NG + E +++   ++ S C   V  ++ LI G  K G  
Sbjct: 341 IQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDL 400

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
             ASE +N++       +VV Y  ++  L K     + N L+  M   GC  +  TFNT 
Sbjct: 401 VGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTF 460

Query: 356 M 356
           +
Sbjct: 461 I 461



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 145/323 (44%), Gaps = 33/323 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +N+LI G C  G++ +A Q+  +M   GC PNVTT   LI G  ++G+    L   
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGD----LVGA 403

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            E  N M   G   +PNV  Y  ++D LCK+ + DQ   L  +M  +G   NT+      
Sbjct: 404 SETWNRMISHG--CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFI 461

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC   ++  A +LLE M   G  P I TY  LL+    + K   A  LF  +  +   
Sbjct: 462 KGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQ 521

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P++ +Y+ ++ G+ +   + EA+ +  + ++ G              P++ T N  I   
Sbjct: 522 PNLVTYNTVLYGFSRAGMMGEALQLFGKALVRG------------TAPDSITYNTMIHAY 569

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           CK G V    +L   +  S  E   +I  + SLI G C +   E A    +K   + +  
Sbjct: 570 CKQGKVKIAAQLVERVS-SMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICP 628

Query: 313 DVVAYNILIH----ALGKEGQIK 331
           +   +N L+     +LG  G I 
Sbjct: 629 NFATWNALVRCFFDSLGHMGPIH 651



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 144/322 (44%), Gaps = 33/322 (10%)

Query: 49  KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108
           KM    C  ++  C  +I G +R G+    LK    M   +G+FG   KP V  Y  L+D
Sbjct: 101 KMDGINCCEDLFIC--IINGYKRVGSAEQALK----MFYRIGEFG--CKPTVRIYNHLLD 152

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNP 160
            L  +        L+  MK  G+  N          LCK  ++  A++L   M  +G  P
Sbjct: 153 ALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPP 212

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
              TYT +++  C  GK++ A  L        F P V  Y+ LI+G CK   +E A+ + 
Sbjct: 213 DAVTYTTMVSSLCKAGKIDDARELAGR-----FKPSVPVYNALIDGMCKEGRIEVAIKLL 267

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
            EM+ NG            V P   + +  I+ LC +G+V     LF  + +  C+  + 
Sbjct: 268 GEMMDNG------------VDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIH 315

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            F  LI+GC   G    A +L+  +       +VVAYN LIH L   G +++   +   M
Sbjct: 316 TFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM 375

Query: 341 EENGCALDVDTFNTLMISFLQK 362
           + +GC  +V T++ L+  F + 
Sbjct: 376 QRSGCLPNVTTYSILIDGFAKS 397



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 52/243 (21%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI-------------------------- 182
           +L+ M   G+N     +  ++NGY  VG    A+                          
Sbjct: 96  ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALL 155

Query: 183 ---------ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
                     L+ +M + G +P+VF+Y++L+   CKN  V+ A             K+F 
Sbjct: 156 SENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAA------------HKLFV 203

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM      P+  T    +  LCK G + +  EL    + S     V ++N+LI G CK G
Sbjct: 204 EMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPS-----VPVYNALIDGMCKEG 258

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E+A +L  ++    +  +VV+Y+ +I++L   G ++    L   M   GC  ++ TF 
Sbjct: 259 RIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFT 318

Query: 354 TLM 356
            L+
Sbjct: 319 PLI 321


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 176/373 (47%), Gaps = 42/373 (11%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+ +++   C  G I DA +L  +      +P+V   + LI G+ + G + + +K
Sbjct: 211 PPDAVTYTTMVSSLCKAGKIDDARELAGRF-----KPSVPVYNALIDGMCKEGRIEVAIK 265

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TL 136
           L  EM++   D      PNV  Y  +I+ LC    V+    LF +M  +G +AN    T 
Sbjct: 266 LLGEMMDNGVD------PNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTP 319

Query: 137 LCK----KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L K    + KL EA  L +LM+Q G  P +  Y  L++G C  G +  A+ + D M R G
Sbjct: 320 LIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG 379

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----------------------- 229
            +P+V +YS+LI+G+ K+ ++  A      MI +G +                       
Sbjct: 380 CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQAN 439

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            +  +M L    P T T N FI GLC NG V   M+L   ++   C   +  +N L+   
Sbjct: 440 SLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
            +   +E A  LF ++  +NL  ++V YN +++   + G + +   L       G A D 
Sbjct: 500 FRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDS 559

Query: 350 DTFNTLMISFLQK 362
            T+NT++ ++ ++
Sbjct: 560 ITYNTMIHAYCKQ 572



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 167/347 (48%), Gaps = 31/347 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+K  C    +  A +L  +M+  GC P+  T  T+++ L + G         
Sbjct: 178 NVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGK-------- 229

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
              ++   +  G +KP+V  Y +LIDG+CK+  ++    L  EM D G++ N +      
Sbjct: 230 ---IDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCII 286

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC    +  A  L   M  RG +  I T+TPL+ G  + GK+  A+ L+  M + G  
Sbjct: 287 NSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCE 346

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V +Y+ LI+G C N ++EEA+ V  +M  +G             +P   T +I IDG 
Sbjct: 347 PNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG------------CLPNVTTYSILIDGF 394

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K+G ++   E +  +    C   V  +  ++   CK  +F+ A+ L  K++ +    + 
Sbjct: 395 AKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNT 454

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           + +N  I  L   G+++    LL  M+ +GC  ++ T+N L+ +  +
Sbjct: 455 ITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFR 501



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 156/361 (43%), Gaps = 42/361 (11%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F  +I G+   G+   A ++  ++  FGC+P V   + L+  L       +   L+  M 
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMK 171

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
                 G I  PNVF Y  L+  LCK+  VD    LF+EM +KG   + +        LC
Sbjct: 172 KD----GLI--PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLC 225

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  K+ +A  L          P +  Y  L++G C  G++ VAI L   M   G  P+V 
Sbjct: 226 KAGKIDDAREL-----AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVV 280

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------KIFNEMKLCNVV 241
           SYS +IN  C + NVE A  +  +M L G                   K++  + L  ++
Sbjct: 281 SYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLM 340

Query: 242 ------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                 P     N  I GLC NG + E +++   ++ S C   V  ++ LI G  K G  
Sbjct: 341 IQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDL 400

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
             ASE +N++       +VV Y  ++  L K     + N L+  M   GC  +  TFNT 
Sbjct: 401 VGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTF 460

Query: 356 M 356
           +
Sbjct: 461 I 461



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 145/323 (44%), Gaps = 33/323 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +N+LI G C  G++ +A Q+  +M   GC PNVTT   LI G  ++G+    L   
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGD----LVGA 403

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            E  N M   G   +PNV  Y  ++D LCK+ + DQ   L  +M  +G   NT+      
Sbjct: 404 SETWNRMISHG--CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFI 461

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC   ++  A +LLE M   G  P I TY  LL+    + K   A  LF  +  +   
Sbjct: 462 KGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQ 521

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P++ +Y+ ++ G+ +   + EA+ +  + ++ G              P++ T N  I   
Sbjct: 522 PNLVTYNTVLYGFSRAGMMGEALQLFGKALVRG------------TAPDSITYNTMIHAY 569

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           CK G V    +L   +  S  E   +I  + SLI G C +   E A    +K   + +  
Sbjct: 570 CKQGKVKIAAQLVERVS-SMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICP 628

Query: 313 DVVAYNILIH----ALGKEGQIK 331
           +   +N L+     +LG  G I 
Sbjct: 629 NFATWNALVRCFFDSLGHMGPIH 651



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 144/322 (44%), Gaps = 33/322 (10%)

Query: 49  KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108
           KM    C  ++  C  +I G +R G+    LK    M   +G+FG   KP V  Y  L+D
Sbjct: 101 KMDGINCCEDLFIC--IINGYKRVGSAEQALK----MFYRIGEFG--CKPTVRIYNHLLD 152

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNP 160
            L  +        L+  MK  G+  N          LCK  ++  A++L   M  +G  P
Sbjct: 153 ALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPP 212

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
              TYT +++  C  GK++ A  L        F P V  Y+ LI+G CK   +E A+ + 
Sbjct: 213 DAVTYTTMVSSLCKAGKIDDARELAGR-----FKPSVPVYNALIDGMCKEGRIEVAIKLL 267

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
            EM+ NG            V P   + +  I+ LC +G+V     LF  + +  C+  + 
Sbjct: 268 GEMMDNG------------VDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIH 315

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            F  LI+GC   G    A +L+  +       +VVAYN LIH L   G +++   +   M
Sbjct: 316 TFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM 375

Query: 341 EENGCALDVDTFNTLMISFLQK 362
           + +GC  +V T++ L+  F + 
Sbjct: 376 QRSGCLPNVTTYSILIDGFAKS 397



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 52/243 (21%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI-------------------------- 182
           +L+ M   G+N     +  ++NGY  VG    A+                          
Sbjct: 96  ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALL 155

Query: 183 ---------ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
                     L+ +M + G +P+VF+Y++L+   CKN  V+ A             K+F 
Sbjct: 156 SENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAA------------HKLFV 203

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM      P+  T    +  LCK G + +  EL    + S     V ++N+LI G CK G
Sbjct: 204 EMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPS-----VPVYNALIDGMCKEG 258

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E+A +L  ++    +  +VV+Y+ +I++L   G ++    L   M   GC  ++ TF 
Sbjct: 259 RIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFT 318

Query: 354 TLM 356
            L+
Sbjct: 319 PLI 321


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 172/374 (45%), Gaps = 46/374 (12%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+   IK FC       A +L++ M   GC  N     T++ GL  +G  +   +L  EM
Sbjct: 148 TYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEM 207

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           +           P+V  +  L+  LCK  LV +++ L  ++  +G+  N          L
Sbjct: 208 L------ARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGL 261

Query: 138 CKK---------TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
           C++         +++VEA   L  M+  G  P   TY  +++GYC  G V  A  +    
Sbjct: 262 CREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDA 321

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK------------------- 229
             KGF PD F+Y  LING+CK+ + + AM V ++ +  G +                   
Sbjct: 322 VFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLI 381

Query: 230 ----KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
               ++ NEM     +P  +T N+ I+GLCK G V +   L        C   +  +N+L
Sbjct: 382 LPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTL 441

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G CK    + A+E+ N++  + +  DV+ YN L++ L K G+ ++   +  +MEE GC
Sbjct: 442 IDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGC 501

Query: 346 ALDVDTFNTLMISF 359
             ++ T+N ++ S 
Sbjct: 502 TPNIITYNIIVDSL 515



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 181/367 (49%), Gaps = 28/367 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S+V+ A       +   + P +D+T+NS+I G+C +G ++DA++++K     G +P+  T
Sbjct: 274 SRVVEAEEYLRKMVNGGFEP-DDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFT 332

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             +LI G  + G+ +  + + ++   G+G   G+ +P++  Y +LI GL +  L+     
Sbjct: 333 YCSLINGFCKDGDPDRAMAVFKD---GLGK--GL-RPSIVLYNTLIKGLSQQGLILPALQ 386

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  EM + G   N          LCK   + +A+ L++  + +G  P IFTY  L++GYC
Sbjct: 387 LMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYC 446

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
              K++ A  + + M  +G  PDV +Y+ L+NG CK    EE M            +IF 
Sbjct: 447 KQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVM------------EIFK 494

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            M+     P   T NI +D LCK   V E ++L   ++    +  V  F +L  G CK G
Sbjct: 495 AMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIG 554

Query: 294 IFEIASELFNKLSCKNLVADVVA-YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             + A +LF ++  +  V    A YNI++ A  ++  +     L   M+ +GC  D  T+
Sbjct: 555 DIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTY 614

Query: 353 NTLMISF 359
             ++  F
Sbjct: 615 RVVIDGF 621



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 165/366 (45%), Gaps = 36/366 (9%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   + RC  P + V FN L+   C +G + ++ +L+ K+   G  PN+ T +  + GL 
Sbjct: 204 FDEMLARCLCP-DVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLC 262

Query: 71  RTGNMNLTLK---------LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
           R G ++  ++           ++MVNG       ++P+   Y S+IDG CK  +V     
Sbjct: 263 REGALDRAVRNSRVVEAEEYLRKMVNGG------FEPDDLTYNSIIDGYCKKGMVQDANR 316

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           +  +   KG   +           CK      A  + +  + +GL P I  Y  L+ G  
Sbjct: 317 VLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLS 376

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G +  A+ L + MA  G +P++++Y+++ING CK   V +A ++  + I  G      
Sbjct: 377 QQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKG------ 430

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+ FT N  IDG CK   +    E+   +        V  +N+L+ G CK G
Sbjct: 431 ------CPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAG 484

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E   E+F  +  K    +++ YNI++ +L K  ++ +   LL  M+  G   DV +F 
Sbjct: 485 KSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFG 544

Query: 354 TLMISF 359
           TL   F
Sbjct: 545 TLFTGF 550



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 157/335 (46%), Gaps = 31/335 (9%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           ++P ++ T+ SLI GFC +G+   A  + K     G RP++   +TLI GL + G +   
Sbjct: 326 FKP-DEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPA 384

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INA 133
           L+L    +N M + G +  PN++ Y  +I+GLCK   V     L  +   KG        
Sbjct: 385 LQL----MNEMAENGCL--PNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTY 438

Query: 134 NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           NTL+   CK+ KL  A  ++  M  +G+ P + TY  LLNG C  GK    + +F +M  
Sbjct: 439 NTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEE 498

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           KG  P++ +Y+++++  CK   V EA+++  EM   G K            P+  +    
Sbjct: 499 KGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLK------------PDVVSFGTL 546

Query: 251 IDGLCKNGHVLEVMELFPTLE--ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             G CK G +    +LF  +E     C      +N ++    +     +A +LF+ +   
Sbjct: 547 FTGFCKIGDIDGAYQLFRRMEKQYDVCHT-TATYNIIVSAFSEQLNMNMAMKLFSVMKNS 605

Query: 309 NLVADVVAYNILIHALGKEGQIKK-ENYLLLSMEE 342
               D   Y ++I    K G I +   +LL +ME+
Sbjct: 606 GCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEK 640



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 119/289 (41%), Gaps = 60/289 (20%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +  T+N+LI G+C +  +  A+++V +M + G  P+V T +TL+ GL + G     + 
Sbjct: 432 PPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVM- 490

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
              E+   M + G    PN+  Y  ++D LCK + V++  DL  EMK KG+  + +    
Sbjct: 491 ---EIFKAMEEKGCT--PNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGT 545

Query: 137 --------------------------LCKKTKLVE--------------ANRLLELMMQR 156
                                     +C  T                  A +L  +M   
Sbjct: 546 LFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNS 605

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G +P  +TY  +++G+C +G +            K F+P + ++  ++N  C    V EA
Sbjct: 606 GCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEA 665

Query: 217 MNVSREMILNGF-----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + +   M+  G        IF   K     P+     I ++ L K GH+
Sbjct: 666 VGIIHLMLQKGIVPETVNTIFEADKKVVAAPK-----ILVEDLLKKGHI 709



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 13/210 (6%)

Query: 145 EANRLLELMMQRGLNPVIF-TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           E  +LL  M +   N ++   Y   +  Y   GKV  A+  F+ M      P V S++ +
Sbjct: 58  EMEKLLSEMRENVNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAI 117

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           +N       VE   +       N   K++  M+   V  + +T  I I   CK       
Sbjct: 118 MN-----ILVEFGYH-------NQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAA 165

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           + L   +    C+     + +++ G    G  + A ELF+++  + L  DVVA+N L+H 
Sbjct: 166 LRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHV 225

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           L K+G + +   LL  + + G   ++ TFN
Sbjct: 226 LCKKGLVFESERLLGKVLKRGVCPNLFTFN 255



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 21/233 (9%)

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +K K+ EA    E M     +P + ++  ++N     G  N A  ++  M  +G   DV+
Sbjct: 88  RKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVY 147

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y++ I  +CK      A+ + R M   G     N +  C VV           GL  +G
Sbjct: 148 TYTIRIKSFCKTARPYAALRLLRNMPELGCDS--NAVAYCTVVA----------GLYDSG 195

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
                 ELF  +        V  FN L+   CK G+   +  L  K+  + +  ++  +N
Sbjct: 196 EHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFN 255

Query: 319 ILIHALGKEGQIKK--ENYLLLSMEE-------NGCALDVDTFNTLMISFLQK 362
           I +  L +EG + +   N  ++  EE        G   D  T+N+++  + +K
Sbjct: 256 IFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKK 308


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 167/350 (47%), Gaps = 35/350 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N+VTF + I+ FC  G +  A QL+ +M  +GC P+V    TL+ G    G ++  + 
Sbjct: 244 PPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAI- 302

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------ 134
              E++NGM     + KPN  CY + + GLC  +  +    L +EM  K    N      
Sbjct: 303 ---ELLNGM-----LCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSM 354

Query: 135 --TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             + LC+   +  A  +LE M + G  P    Y  L+  +   G+V+ A+ L +SM    
Sbjct: 355 LTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMP--- 411

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PDV S++  + G C+     E  + + E+I+   ++       C ++  TF  NI ID
Sbjct: 412 CSPDVISFNAALKGLCR----AERWDDAEELIVQMLRED------CPLIEMTF--NILID 459

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LC+NG V   +E+F  +    C   +  ++SLI G  + G+ E A ELF  + CK    
Sbjct: 460 SLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSMPCK---P 516

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           D+  YN ++  L +  + +    L+ +M    C  +  TFN L+ S  QK
Sbjct: 517 DIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQK 566



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 20/212 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL ++TFN LI   C  G + +A ++ ++M  +GC P++ T  +LI GL   G +   ++
Sbjct: 448 PLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIE 507

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L Q M           KP++F Y +++ GLC+    +   +L   M  K    N +    
Sbjct: 508 LFQSMP---------CKPDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNI 558

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC+K  +  A  + E M + G  P IFTY  L+NG+   G+++ A  L  +M+ K 
Sbjct: 559 LINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTMSCK- 617

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
             PD  SY+  + G C+    +EA  V  EM+
Sbjct: 618 --PDAVSYNSALKGLCRAERWKEAEEVVAEML 647



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 151/363 (41%), Gaps = 63/363 (17%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
             +VL AL A G+         + V+ N+L+ G+C +G + DA +L+      G   NV 
Sbjct: 131 AERVLDALKAAGA--------ADPVSHNTLVAGYCRDGRLADAERLLAAAGLSGAA-NVV 181

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T  TLI G  R+G +   L L   M            P+ + Y +++ GLC  R  +  +
Sbjct: 182 TYTTLINGYCRSGRLADALALIASMP---------VAPDTYTYNTVLMGLCGARQWEDAE 232

Query: 121 DLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
            L  EM                           ++    P   T+   +  +C  G ++ 
Sbjct: 233 ALMAEM---------------------------VRNHCPPNEVTFATQIRAFCQNGLLDR 265

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A+ L D M + G  PDV  YS L+NG+ +   V++A+      +LNG         LC  
Sbjct: 266 AVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIE-----LLNGM--------LCK- 311

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P T   N  + GLC      +V +L   +   +C      F+ L    C+ G+ + A E
Sbjct: 312 -PNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAME 370

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           +  ++       D V YN LI++  ++G++     LL SM    C+ DV +FN  +    
Sbjct: 371 VLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMP---CSPDVISFNAALKGLC 427

Query: 361 QKE 363
           + E
Sbjct: 428 RAE 430



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 120/247 (48%), Gaps = 26/247 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           ++FN+ +KG C      DA +L+ +M    C     T + LI  L + G +N  +++ ++
Sbjct: 417 ISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQ 476

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK----GINANTL-LCK 139
           M      +G    P++  Y SLI+GL +  LV+   +LF  M  K    G NA    LC+
Sbjct: 477 MPK----YG--CTPDIVTYSSLINGLSEQGLVESAIELFQSMPCKPDIFGYNAVLKGLCR 530

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             +  +A  L+  M ++   P   T+  L+N  C  G V+ AI +F+ M + G  PD+F+
Sbjct: 531 AARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFT 590

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+ LING+ +   +++A            +++ + M   +  P+  + N  + GLC+   
Sbjct: 591 YNALINGFSEQGRLDDA------------RRLLSTM---SCKPDAVSYNSALKGLCRAER 635

Query: 260 VLEVMEL 266
             E  E+
Sbjct: 636 WKEAEEV 642


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 171/366 (46%), Gaps = 38/366 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++  T+ +++KG C  G++  A  +VK+M   GCRPNV    TLI    +       +++
Sbjct: 415 ISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRV 474

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM        GI  P++FCY SLI GL K + +D+ +   +EM + G+  N       
Sbjct: 475 LKEMKE-----QGI-APDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF 528

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                + ++   A++ ++ M + G+ P     T L+N YC  GKV  A + + SM  +G 
Sbjct: 529 ISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGI 588

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK--------- 230
           + D  +Y+VL+NG  KN  V++A  + REM              ++NGF K         
Sbjct: 589 LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASS 648

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           IF+EM    + P     N+ + G C++G + +  EL   + +         + ++I G C
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G    A  LF+++  K LV D   Y  L+    +   +++    +    + GCA    
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA-ITIFGTNKKGCASSTA 767

Query: 351 TFNTLM 356
            FN L+
Sbjct: 768 PFNALI 773



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 175/386 (45%), Gaps = 45/386 (11%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R C    N V    LI  +C +G + +A    + M   G   +  T   L+ GL +   
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++   ++ +EM  G G       P+VF YG LI+G  K   + +   +F EM ++G+  N
Sbjct: 608 VDDAEEIFREM-RGKG-----IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661

Query: 135 TLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            ++        C+  ++ +A  LL+ M  +GL+P   TY  +++GYC  G +  A  LFD
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV---------SREMILNG-------FKK 230
            M  KG +PD F Y+ L++G C+  +VE A+ +         S     N        F K
Sbjct: 722 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGK 781

Query: 231 IFNEMKLCNVV----------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
              + ++ N +          P   T NI ID LCK G++    ELF  ++ +N    V 
Sbjct: 782 TELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVI 841

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            + SL+ G  K G       +F++     +  D + Y+++I+A  KEG   K   L+  M
Sbjct: 842 TYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQM 901

Query: 341 -----EENGCALDVDTFNTLMISFLQ 361
                 ++GC L + T   L+  F +
Sbjct: 902 FAKNAVDDGCKLSISTCRALLSGFAK 927



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 153/380 (40%), Gaps = 87/380 (22%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           KV+ A  A+ S + +    L D  T+  L+ G      + DA ++ ++M   G  P+V +
Sbjct: 572 KVIEACSAYRSMVDQGI--LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFS 629

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
              LI G  + GNM     +  EMV  G+        PNV  Y  L+ G C+   +++ K
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGL-------TPNVIIYNMLLGGFCRSGEIEKAK 682

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L  EM  KG++ N +         CK   L EA RL + M  +GL P  F YT L++G 
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742

Query: 173 CLVGKVNVAIALFD---------------------------------------SMARKGF 193
           C +  V  AI +F                                        S  R G 
Sbjct: 743 CRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG- 801

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK--------- 230
            P+  +Y+++I+  CK  N+E A  +  +M              +LNG+ K         
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-----CELFVEIFNSL 285
           +F+E     + P+    ++ I+   K G   + + L   +   N     C+L +    +L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921

Query: 286 IRGCCKFGIFEIASELFNKL 305
           + G  K G  E+A ++   +
Sbjct: 922 LSGFAKVGEMEVAEKVMENM 941



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 147/348 (42%), Gaps = 48/348 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI   C  GN++     + K   F       T          T N++  LKL + M
Sbjct: 223 TYHMLIIAHCRAGNVQ-----LGKDVLFKTEKEFRTA---------TLNVDGALKLKESM 268

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +  G+        P  + Y  LIDGLCK + ++  K L +EM   G++ +          
Sbjct: 269 ICKGL-------VPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV---AIALFDSMARKGF 193
           L K      A  L+  M+  G+N   + Y   +   C++ K  V   A ALFD M   G 
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCI---CVMSKEGVMEKAKALFDGMIASGL 378

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P   +Y+ LI GYC+  NV +              ++  EMK  N+V   +T    + G
Sbjct: 379 IPQAQAYASLIEGYCREKNVRQGY------------ELLVEMKKRNIVISPYTYGTVVKG 426

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           +C +G +     +   +  S C   V I+ +LI+   +   F  A  +  ++  + +  D
Sbjct: 427 MCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +  YN LI  L K  ++ +    L+ M ENG   +  T+   +  +++
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIE 534



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 155/373 (41%), Gaps = 40/373 (10%)

Query: 13  SFIRRCYRPL-----NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           S I RC +       + V F  L  G+  +  I +A  +          P ++ C  L+ 
Sbjct: 135 SSIVRCSQEFVGKSDDGVLFGILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLD 194

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
            L R   ++L   +++ MV     F      +V  Y  LI   C+   V   KD+  +  
Sbjct: 195 ALLRWNRLDLFWDVYKGMVERNVVF------DVKTYHMLIIAHCRAGNVQLGKDVLFKT- 247

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +K     TL      +  A +L E M+ +GL P+ +TY  L++G C + ++  A +L   
Sbjct: 248 EKEFRTATL-----NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVE 302

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------------------- 228
           M   G   D  +YS+LI+G  K  N + A  +  EM+ +G                    
Sbjct: 303 MDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGV 362

Query: 229 ----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
               K +F+ M    ++P+       I+G C+  +V +  EL   ++  N  +    + +
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +++G C  G  + A  +  ++       +VV Y  LI    +  +      +L  M+E G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 345 CALDVDTFNTLMI 357
            A D+  +N+L+I
Sbjct: 483 IAPDIFCYNSLII 495



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 31/211 (14%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++VL  LM  GSF R  +   NDVT+N +I   C EGN+  A +L  +M      P V T
Sbjct: 786 TEVLNRLMD-GSFDR--FGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVIT 842

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             +L+ G  + G       +  E +       GI +P+   Y  +I+   K+ +  +   
Sbjct: 843 YTSLLNGYDKMGRRAEMFPVFDEAIAA-----GI-EPDHIMYSVIINAFLKEGMTTKALV 896

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           L  +M  K  NA    CK +                    I T   LL+G+  VG++ VA
Sbjct: 897 LVDQMFAK--NAVDDGCKLS--------------------ISTCRALLSGFAKVGEMEVA 934

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
             + ++M R  ++PD  +   LIN  C + N
Sbjct: 935 EKVMENMVRLQYIPDSATVIELINESCISSN 965


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 169/377 (44%), Gaps = 50/377 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R Y P N+V +N+LI G+C  GNI  A Q+   M + G  PN  TC++LI G  ++  M 
Sbjct: 296 RGYAP-NNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQME 354

Query: 77  LTLKLHQEMVNG-----MGDFGGI------------------------YKPNVFCYGSLI 107
               L +EM+ G      G F  +                        +KPN      L+
Sbjct: 355 HAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLV 414

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLN 159
            GLC++    +  +L+  + +KG  ANT+        LC+     EA +LL+ M++RGL 
Sbjct: 415 SGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLV 474

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
               +Y  L+   C  GKV     L + M R+G  PD+++Y++L++G C    +EEA  +
Sbjct: 475 LDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGL 534

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             E   NG              P+ +T  I IDG CK   V E  +LF  +     E   
Sbjct: 535 WHECKKNG------------NFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNA 582

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            ++ +LIR  C+ G    A  L + +  + +      Y+ LIH L   G +   N LL  
Sbjct: 583 VVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDE 642

Query: 340 MEENGCALDVDTFNTLM 356
           M + G + +V  +  L+
Sbjct: 643 MRKEGLSPNVVCYTALI 659



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 159/353 (45%), Gaps = 56/353 (15%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F++++  FC  G + DA +L +KM   G  PNV T + +I GL + G ++   +  ++M 
Sbjct: 200 FSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKME 259

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
                     KP++  YG LI+GL K    D                           EA
Sbjct: 260 KER------VKPSLVTYGVLINGLVKLERFD---------------------------EA 286

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
           N +L+ M  RG  P    Y  L++GYC +G ++ A+ + D M   G  P+  + + LI G
Sbjct: 287 NCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQG 346

Query: 207 YCKNFNVEEAMNVSREMILNG-------FKKIFN----------------EMKLCNVVPE 243
           YCK+  +E A ++  EM+  G       F  + +                EM L N  P 
Sbjct: 347 YCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPN 406

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
                + + GLC+NG   E +EL+  L            N+LI G C+ G  E A++L  
Sbjct: 407 DGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLK 466

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++  + LV D ++YN LI A  KEG++++   L   M   G   D+ T+N L+
Sbjct: 467 EMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLL 519



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 169/379 (44%), Gaps = 62/379 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFG------------------CR-------- 56
           N VT NSLI+G+C    +  A  L+++M T G                  CR        
Sbjct: 336 NSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFI 395

Query: 57  ---------PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107
                    PN      L++GL + G  +  ++L   ++         +  N     +LI
Sbjct: 396 MEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKG------FAANTVTSNALI 449

Query: 108 DGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLN 159
            GLC+    ++   L  EM ++G     I+ NTL+   CK+ K+ E  +L E M++RG+ 
Sbjct: 450 HGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQ 509

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P ++TY  LL+G C +GK+  A  L+    + G  PD ++Y ++I+GYCK   VEE    
Sbjct: 510 PDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEG--- 566

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                    +K+F EM    +          I   C+NG++ E   L   +         
Sbjct: 567 ---------EKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTS 617

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             ++SLI G    G+ + A++L +++  + L  +VV Y  LI    K GQ+ K + +L  
Sbjct: 618 ATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQE 677

Query: 340 MEENGCALDVDTFNTLMIS 358
           M  N    +  T+ T+MI+
Sbjct: 678 MSINNVHPNKITY-TIMIN 695



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 37/301 (12%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ +++N+LI   C EG + +  +L ++M   G +P++ T + L+ GL   G +     L
Sbjct: 475 LDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGL 534

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
             E     G+F     P+ + YG +IDG CK   V++ + LF EM    I  N ++    
Sbjct: 535 WHECKKN-GNF-----PDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTL 588

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+   + EA RL + M  RG+     TY+ L++G   +G V+ A  L D M ++G 
Sbjct: 589 IRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGL 648

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
            P+V  Y+ LI GYCK   + +  ++ +EM +N                          K
Sbjct: 649 SPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAK 708

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           + NEM    +VP+  T N   +G CK G + E +++   +      L    + +LI G  
Sbjct: 709 LLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGWH 768

Query: 291 K 291
           K
Sbjct: 769 K 769



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 155/348 (44%), Gaps = 32/348 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG---LRRTGNMNLTL 79
           N VT+N++I G C  G + +A Q  +KM     +P++ T   LI G   L R    N  L
Sbjct: 231 NVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCIL 290

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           K        M D G  Y PN   Y +LIDG C+   +     +  +M   GI+ N++   
Sbjct: 291 K-------EMSDRG--YAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCN 341

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 CK  ++  A  LLE M+  G      T+T +++  CL  + + A+     M  +
Sbjct: 342 SLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLR 401

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
            F P+    ++L++G C+N    EA+ +   ++  GF               T T N  I
Sbjct: 402 NFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGF------------AANTVTSNALI 449

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
            GLC+ G   E  +L   +      L    +N+LI  CCK G  E   +L  ++  + + 
Sbjct: 450 HGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQ 509

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            D+  YN+L+H L   G+I++   L    ++NG   D  T+  ++  +
Sbjct: 510 PDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGY 557



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 16/200 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI+ +C  GN+R+A +L   M + G      T  +LI GL   G ++   +L 
Sbjct: 581 NAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLL 640

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
            EM   G+        PNV CY +LI G CK   + +   +  EM    ++ N +     
Sbjct: 641 DEMRKEGL-------SPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIM 693

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               CK   +  A +LL  M Q+G+ P   TY  L NG+C  GK+  A+ + D M+  G 
Sbjct: 694 INGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGI 753

Query: 194 MPDVFSYSVLINGYCKNFNV 213
             D  +Y+ LI+G+ K   V
Sbjct: 754 SLDDITYTTLIDGWHKPLTV 773



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 12/212 (5%)

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            L  L+  +GL P + T   LL+      +V ++  +FD M   G  PDV+ +S ++N +
Sbjct: 148 ELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAF 207

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C    V++A+            ++F +M+   V P   T N  I GLCKNG + E  +  
Sbjct: 208 CTGGRVDDAI------------ELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFK 255

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +E    +  +  +  LI G  K   F+ A+ +  ++S +    + V YN LI    + 
Sbjct: 256 EKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRI 315

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           G I     +   M  NG + +  T N+L+  +
Sbjct: 316 GNISTALQIRDDMISNGISPNSVTCNSLIQGY 347



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 54/122 (44%)

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P   TCN  +  L K   V    ++F  +        V +F++++   C  G  + A EL
Sbjct: 160 PSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIEL 219

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           F K+    +  +VV YN +IH L K G++ +       ME+      + T+  L+   ++
Sbjct: 220 FRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVK 279

Query: 362 KE 363
            E
Sbjct: 280 LE 281


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 171/351 (48%), Gaps = 25/351 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           NDVT++ LI  FC  G +  A   + KM   G +  V    +LI+G  + G +     L 
Sbjct: 389 NDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLF 448

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM+ NG+       KPNV  Y SLI G CK+  +     L+ EM  KGI+ NT      
Sbjct: 449 DEMIANGL-------KPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTAL 501

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC   ++ EAN+L   M++  + P   TY  L+ G+C  G    A  L D M  KG 
Sbjct: 502 ISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGL 561

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI--LNGFKKIFNEMKLCNVVPETFTCNIFI 251
           +PD ++Y  LI+G C    V EA    RE +  L G ++  NE++ C  +P   T    I
Sbjct: 562 VPDTYTYRPLISGLCSTGRVSEA----REFMNDLQGEQQKLNEIEGC--LPNVVTYTALI 615

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +GLCK G + +   L   +  SN       +   +      G  E A +L + L  +  +
Sbjct: 616 NGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVL-LEGFL 674

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           A+ V YNILI    K G+I++   +L++M ++G + D  +++T++  + ++
Sbjct: 675 ANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRR 725



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 162/347 (46%), Gaps = 34/347 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ +L+ G C         +++ +M  FG  P+      L+ GLR+ GN+        ++
Sbjct: 287 TYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAF----DL 342

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           VN +  FG    P++F Y +LI+ +CKD  +D+ + LF  M  KG+  N +         
Sbjct: 343 VNKVKKFG--VAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSF 400

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ KL  A   L  M + G+   ++ Y+ L++G+C +GK+  A +LFD M   G  P+V
Sbjct: 401 CKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNV 460

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             Y+ LI+GYCK   +  A             ++++EM    + P T+T    I GLC  
Sbjct: 461 VIYTSLISGYCKEGELHNAF------------RLYHEMTGKGISPNTYTFTALISGLCHA 508

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             + E  +LF  +   N       +N LI G CK G    A EL +++  K LV D   Y
Sbjct: 509 NRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTY 568

Query: 318 NILIHALGKEGQIKKENYLLLSM--------EENGCALDVDTFNTLM 356
             LI  L   G++ +    +  +        E  GC  +V T+  L+
Sbjct: 569 RPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALI 615



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 165/365 (45%), Gaps = 61/365 (16%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A   F   I    +P N V + SLI G+C EG + +A +L  +M   G  PN  T 
Sbjct: 440 KLRAAKSLFDEMIANGLKP-NVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTF 498

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI+GL     M    KL  EMV    ++  I  PN   Y  LI+G CK+         
Sbjct: 499 TALISGLCHANRMAEANKLFGEMV----EWNVI--PNEVTYNVLIEGHCKE--------- 543

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                      NT        V A  LL+ M+++GL P  +TY PL++G C  G+V+ A 
Sbjct: 544 ----------GNT--------VRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAR 585

Query: 183 ALFDSMAR--------KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
              + +          +G +P+V +Y+ LING CK   +++A  + REM+ +        
Sbjct: 586 EFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLAS-------- 637

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE---IFNSLIRGCCK 291
               N +P   T   F+D L   G++ + ++L   L     E F+     +N LIRG CK
Sbjct: 638 ----NSLPNQNTYACFLDYLTSEGNIEKAIQLHDVL----LEGFLANTVTYNILIRGFCK 689

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  + A+E+   +    +  D ++Y+ +I+   + G +K+   L  SM   G   D   
Sbjct: 690 LGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVA 749

Query: 352 FNTLM 356
           +N L+
Sbjct: 750 YNFLI 754



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 158/370 (42%), Gaps = 79/370 (21%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           ++SLI G C  G +R A  L  +M   G +PNV    +LI+G  + G ++   +L+ EM 
Sbjct: 428 YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMT 487

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------C 138
                 G    PN + + +LI GLC    + +   LF EM +  +  N +         C
Sbjct: 488 ------GKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHC 541

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK------- 191
           K+   V A  LL+ M+++GL P  +TY PL++G C  G+V+ A    + +  +       
Sbjct: 542 KEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEI 601

Query: 192 -GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI-----------------LNGFKKIFN 233
            G +P+V +Y+ LING CK   +++A  + REM+                 L     I  
Sbjct: 602 EGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEK 661

Query: 234 EMKLCNVVPETF-----TCNIFIDGLCKNGHVLEVMELFPTLEIS----NCELFVEI--- 281
            ++L +V+ E F     T NI I G CK G + E  E+   +  S    +C  +  I   
Sbjct: 662 AIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYE 721

Query: 282 ----------------------------FNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
                                       +N LI GCC  G    A EL + +  + +  +
Sbjct: 722 YCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPN 781

Query: 314 VVAYNILIHA 323
              YN LIH 
Sbjct: 782 RATYNSLIHG 791



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 159/392 (40%), Gaps = 65/392 (16%)

Query: 11  FGSFIRRCYRPLNDVT---FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           F SF+   YR  N  T   F+ LI+ +       D   +V+ M   G  P + T   ++ 
Sbjct: 130 FESFLDS-YRKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLN 188

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           GL R     + L L  E+V+      G+ +P+V+ Y +++  LC+ +   + +++   M+
Sbjct: 189 GLIRIRQFRMALHLFDEIVSS-----GL-RPDVYVYTAVVRSLCELKDFIRAREVIGRME 242

Query: 128 DKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV---- 175
             G + +          LCK  ++ EA  +  L+  +GL   + TY  L+ G C V    
Sbjct: 243 SSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFE 302

Query: 176 -------------------------------GKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                                          G +  A  L + + + G  P +F Y+ LI
Sbjct: 303 AGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALI 362

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           N  CK+  ++EA            + +FN M    + P   T +I ID  CK G +   +
Sbjct: 363 NSMCKDGKLDEA------------ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVAL 410

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                +     +  V  ++SLI G CK G    A  LF+++    L  +VV Y  LI   
Sbjct: 411 HFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGY 470

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            KEG++     L   M   G + +  TF  L+
Sbjct: 471 CKEGELHNAFRLYHEMTGKGISPNTYTFTALI 502



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 163/359 (45%), Gaps = 29/359 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           AL  F   +    RP  DV  + ++++  C   +   A +++ +M + GC  +V T +  
Sbjct: 199 ALHLFDEIVSSGLRP--DVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVF 256

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I GL +   +   ++     +  +  + G+ + +V  Y +L+ GLCK    +  +++  E
Sbjct: 257 IRGLCKNQRVWEAVE-----IKNLLSYKGL-RADVGTYCTLVLGLCKVEEFEAGEEMMNE 310

Query: 126 MKDKGI--------NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M + G         N    L KK  +  A  L+  + + G+ P +F Y  L+N  C  GK
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           ++ A +LF++M  KG  P+  +YS+LI+ +CK   ++ A++   +M   G K        
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKAT------ 424

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
                  +  +  I G CK G +     LF  +  +  +  V I+ SLI G CK G    
Sbjct: 425 ------VYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHN 478

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A  L+++++ K +  +   +  LI  L    ++ + N L   M E     +  T+N L+
Sbjct: 479 AFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLI 537



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 126/301 (41%), Gaps = 57/301 (18%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           FG  +     P N+VT+N LI+G C EGN   A +L+ +M   G  P+  T   LI+GL 
Sbjct: 518 FGEMVEWNVIP-NEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLC 576

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYK--PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
            TG ++   +   ++         I    PNV  Y +LI+GLCK  L+D+ + L  EM  
Sbjct: 577 STGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLA 636

Query: 129 ----------------------------------KGINANTL--------LCKKTKLVEA 146
                                             +G  ANT+         CK  ++ EA
Sbjct: 637 SNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEA 696

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             +L  M+  G++P   +Y+ ++  YC  G +  AI L++SM  +G  PD  +Y+ LI G
Sbjct: 697 AEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYG 756

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            C    + +A  +  +M+  G K            P   T N  I G C    V    + 
Sbjct: 757 CCVTGELTKAFELRDDMMRRGVK------------PNRATYNSLIHGTCLMSSVSSTADY 804

Query: 267 F 267
           F
Sbjct: 805 F 805



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 12/210 (5%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           ++ LMM  G+ P I T + +LNG   + +  +A+ LFD +   G  PDV+ Y+ ++   C
Sbjct: 167 VVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLC 226

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           +  +   A  V   M  +G          C++   T+  N+FI GLCKN  V E +E+  
Sbjct: 227 ELKDFIRAREVIGRMESSG----------CDLSVATY--NVFIRGLCKNQRVWEAVEIKN 274

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            L        V  + +L+ G CK   FE   E+ N++     V    A + L+  L K+G
Sbjct: 275 LLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKG 334

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            I     L+  +++ G A  +  +N L+ S
Sbjct: 335 NIGSAFDLVNKVKKFGVAPSLFVYNALINS 364



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 15/184 (8%)

Query: 183 ALFDSM---ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
            LF+S     RK        + +LI  Y +N    + + V R M+             C 
Sbjct: 128 GLFESFLDSYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMD------------CG 175

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           ++P+  T +  ++GL +       + LF  +  S     V ++ +++R  C+   F  A 
Sbjct: 176 ILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAR 235

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           E+  ++        V  YN+ I  L K  ++ +   +   +   G   DV T+ TL++  
Sbjct: 236 EVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGL 295

Query: 360 LQKE 363
            + E
Sbjct: 296 CKVE 299


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 169/365 (46%), Gaps = 37/365 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N LI      G + +A  L  +M   GC P+  T ++LI GL + G     ++L +EM
Sbjct: 116 TYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEM 175

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                       P+V  Y SLI GL KD    +   LF EMK +G   +++        L
Sbjct: 176 ERHG------CPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDAL 229

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K  ++ +A  LL+ M +RG+ P + TY  L+ G+  VG +  A  L D M R G  PDV
Sbjct: 230 GKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDV 289

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM-----------------------ILNGFKKIFNE 234
            +YS LI G  K   ++EA  V ++M                       +LN   ++F+ 
Sbjct: 290 VTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDR 349

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           MK     P+  T +  I  L K   V     LF  +E    +  +  + S+I    K G 
Sbjct: 350 MKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQ 409

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A  LF+++  K L  DV+ YN  +++LG+ G+ K+   +   M+E+G   DV T++ 
Sbjct: 410 VDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDA 469

Query: 355 LMISF 359
           L++  
Sbjct: 470 LLLGL 474



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 162/369 (43%), Gaps = 39/369 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+NSL+      G   +A  L +++      P+V +   LI  L R G     L++ 
Sbjct: 8   NVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVV 67

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------- 134
            EM   G        KPN++ Y +L+D L K    D+   L  EM+D G   +       
Sbjct: 68  AEMQAKGC-------KPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCL 120

Query: 135 -TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
            + L K  +L EA  L   M +RG  P  FTY  L+ G   VG+   A+ L + M R G 
Sbjct: 121 ISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGC 180

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
            PDV +YS LI G  K+    +A  + +EM   G K                       +
Sbjct: 181 PPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALE 240

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           + +EMK   V P   T N  I G  K G ++E   L   ++ + C+  V  ++ LI G  
Sbjct: 241 LLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLI 300

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K    + A ++  K+  +    D + YN LI+ LGK G +     L   M+  GC  DV 
Sbjct: 301 KASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVV 360

Query: 351 TFNTLMISF 359
           T++TL+ + 
Sbjct: 361 TYSTLITAL 369



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 162/339 (47%), Gaps = 26/339 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N+L+      G   +A +L+ +M   GC P+V T + LI+ L + G ++    L  EM
Sbjct: 81  TYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEM 140

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
                + G +  P+ F Y SLI GL K     +  +L  EM+  G   +        T L
Sbjct: 141 R----ERGCV--PDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGL 194

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K  + V+A +L + M +RG  P   T+T L++     G+V+ A+ L D M  +G  P V
Sbjct: 195 GKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGV 254

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LI G+ K  ++ EA N+  EM  NG K            P+  T +  I GL K 
Sbjct: 255 VTYNALIAGFGKVGDLVEAYNLLDEMKRNGCK------------PDVVTYSCLITGLIKA 302

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             + E  ++   +E   C      +N+LI G  K G+   A  LF+++  K    DVV Y
Sbjct: 303 SQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTY 362

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + LI ALGK  +++    L   ME  G   D+ T+ +++
Sbjct: 363 STLITALGKAARVESACVLFEEMESVGIQPDLFTYCSII 401



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 168/387 (43%), Gaps = 40/387 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F    RR  +P + +TF +L+      G + DA +L+ +M   G +P V T + LI
Sbjct: 203 AFKLFQEMKRRGRKP-DSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALI 261

Query: 67  TGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            G  + G++     L  EM  NG        KP+V  Y  LI GL K   +D+   +  +
Sbjct: 262 AGFGKVGDLVEAYNLLDEMKRNGC-------KPDVVTYSCLITGLIKASQLDEACQVLKK 314

Query: 126 MKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M+ +G     I  NTL   L K   L +A RL + M  +G NP + TY+ L+       +
Sbjct: 315 MEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAAR 374

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------- 228
           V  A  LF+ M   G  PD+F+Y  +I    K   V++A  +  EM   G          
Sbjct: 375 VESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNA 434

Query: 229 --------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
                         +KIF +MK   ++P+  T +  + GL K   V +   L   L    
Sbjct: 435 FLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQG 494

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C      F+  +     +G  + A EL    + K L     +YN LI AL K G++ +  
Sbjct: 495 CAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAF 554

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQ 361
             L  ++E G   D+ ++++L+ +  Q
Sbjct: 555 NTLEDLKEQGGKPDIVSYSSLISALGQ 581



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 155/340 (45%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT++ LI G      + +A Q++KKM   GC P+  T +TLI GL + G +N   +L   
Sbjct: 290 VTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDR 349

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TL 136
           M +   +      P+V  Y +LI  L K   V+    LF EM+  GI  +        T+
Sbjct: 350 MKSKGCN------PDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITV 403

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K  ++ +A+RL   M  +GL+P + TY   LN     G+   A  +F+ M   G +PD
Sbjct: 404 LGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPD 463

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y  L+ G  K   V++A  + +E+I  G    F+ +K           +  ++ L  
Sbjct: 464 VATYDALLLGLSKTKEVDDACGLLKELIEQGC--AFDSLKF----------DECLEILTS 511

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G+V E  EL               +N+LI    K G    A      L  +    D+V+
Sbjct: 512 WGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVS 571

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y+ LI ALG+ GQI     LL  M + G  L   +++ L+
Sbjct: 572 YSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLV 611



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 125/274 (45%), Gaps = 20/274 (7%)

Query: 94  GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVE 145
           G   PNV  Y SL++ L K    ++ + LF E+K      + +        L +  K   
Sbjct: 3   GFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEA 62

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  ++  M  +G  P ++TY  L++     G+ + A+ L   M   G +PDV +Y+ LI+
Sbjct: 63  ALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIS 122

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
              K   + EA              +F EM+    VP+TFT N  I GL K G   + ME
Sbjct: 123 TLGKAGRLSEAFT------------LFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAME 170

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L   +E   C   V  ++SLI G  K G    A +LF ++  +    D + +  L+ ALG
Sbjct: 171 LLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALG 230

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           K G++     LL  M+E G    V T+N L+  F
Sbjct: 231 KAGRVDDALELLDEMKERGVKPGVVTYNALIAGF 264


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 179/407 (43%), Gaps = 73/407 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++VT+ +L+ GFC    +  A ++   M   G  P+   C  +I  LR+   +     L 
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSL- 325

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
                 +GD G +  PNVF Y +LID LCK+   D    LF EM  +G+  N +      
Sbjct: 326 ---ACKLGDLGMV--PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILI 380

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+  + +A  L + M  +G+   ++ Y  L+NGYC  G ++ A  L   M ++G  
Sbjct: 381 HALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLT 440

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKI 231
           P   SYS LI G C+N ++   M + REM              ++NGF          ++
Sbjct: 441 PTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARL 500

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC- 290
           F++M   NV+P   T N+ I+G C  G++ +  +L+  +     +     + SLI G C 
Sbjct: 501 FDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCL 560

Query: 291 ----------------------------------KFGIFEIASELFNKLSCKNLVADVVA 316
                                             + G F     L+++++ + +  D+V+
Sbjct: 561 TSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVS 620

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + I+++A  K+   +K   L   M+E G   D D F T MI  L KE
Sbjct: 621 FTIIVYAALKQHDKEKSCVLFREMKEQGVKPD-DIFYTCMIDALSKE 666



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 168/371 (45%), Gaps = 50/371 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTFN +I+G+C+ GNIR A QL  +M   G +P+  T  +LI+GL  T  ++   +  
Sbjct: 512 NEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFV 571

Query: 83  QEMVNGM------------------GDFGGIY-----------KPNVFCYGSLIDGLCKD 113
            ++ N                    G F   Y           K ++  +  ++    K 
Sbjct: 572 ADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQ 631

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
              +++  LF EMK++G+  + +        L K+  +++A    + M+  G +P   T+
Sbjct: 632 HDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTH 691

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L+N  C  G +  A  L   M     +P+ F+Y+  ++ +    ++E+A ++   M+ 
Sbjct: 692 TVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML- 750

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
                   +  L ++V    + NI I GLCK G + E ++L   +  S        ++++
Sbjct: 751 --------QGHLASIV----SFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTI 798

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I   CK G    A EL+N++  K L  DVVAYNI I      G+  K   +  +M  +G 
Sbjct: 799 IHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGV 858

Query: 346 ALDVDTFNTLM 356
             + DT+  L+
Sbjct: 859 QPNWDTYRALL 869



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 130/290 (44%), Gaps = 31/290 (10%)

Query: 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
           + Y + I   C+ R +D  + L + M+ +G+ A+ +        LCK  ++ EA  +  +
Sbjct: 199 YVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNV 258

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+  G+     TY  L+ G+C + ++ +A+ +   M R GF+P   + S +I+   K   
Sbjct: 259 MVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKEL 318

Query: 213 VEEAMNVSRE-----MILNGFK------------------KIFNEMKLCNVVPETFTCNI 249
           VEEA +++ +     M+ N F                   ++F EM    + P   T  I
Sbjct: 319 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 378

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            I  LCK G + + + LF  +     ++ V  +NSLI G CK G  + A  L + +  + 
Sbjct: 379 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L     +Y+ LI  L + G +     L   M E G A +  TF  L+  F
Sbjct: 439 LTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGF 488



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 114/266 (42%), Gaps = 20/266 (7%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLL 150
           N +    ++  L K R     +DLF +M   G++ +  +        C+   L  A  L+
Sbjct: 162 NQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV 221

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             M   G+      Y  L+ G C   +V  A+ + + M   G   D  +Y  L+ G+C+ 
Sbjct: 222 VRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRM 281

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
             +E A+ ++ +MI  GF            VP    C+  ID L K   V E   L   L
Sbjct: 282 EELEMALRITHDMIRLGF------------VPSEANCSFMIDELRKKELVEEAFSLACKL 329

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                   V  +N+LI   CK   F+ A  LF +++ + L  + V Y ILIHAL K G I
Sbjct: 330 GDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMI 389

Query: 331 KKENYLLLSMEENGCALDVDTFNTLM 356
           +    L   M + G  + V  +N+L+
Sbjct: 390 EDALCLFDKMRDKGIKVTVYPYNSLI 415



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 16/211 (7%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           ++ AL  +   +   Y P N VT   LI   C  G +  A  L K+M      PN  T +
Sbjct: 669 MIQALNCWDQMVVDGYSP-NTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYN 727

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
             +      G+M     LH  M+ G       +  ++  +  LI GLCK   + +  DL 
Sbjct: 728 CFLDYFATEGDMEKAKDLHSAMLQG-------HLASIVSFNILIKGLCKAGKIQEAIDLM 780

Query: 124 MEMKDKG-----INANTLLCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLV 175
            ++ + G     I+ +T++ +  K+ + N+  EL   M+ +GL P +  Y   +    + 
Sbjct: 781 SKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVH 840

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLING 206
           G+ + A+ ++ +M R G  P+  +Y  L++G
Sbjct: 841 GESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 49/250 (19%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L L +  G+    +T + +L     + +  +A  LFD M + G   D + Y+  I  YC
Sbjct: 150 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYC 209

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL-- 266
           ++ N++ A  +   M   G K         + VP     N+ + GLCKN  V E +E+  
Sbjct: 210 ESRNLDGARGLVVRMESEGVK--------ASAVP----YNVLMYGLCKNMRVQEAVEVKN 257

Query: 267 -------------FPTLEISNC-----ELFVEIFNSLIR-------GCCKFGI-----FE 296
                        + TL    C     E+ + I + +IR         C F I      E
Sbjct: 258 VMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKE 317

Query: 297 IASELFNKLSCK----NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           +  E F+ L+CK     +V +V AYN LI  L K  +    + L   M   G   +  T+
Sbjct: 318 LVEEAFS-LACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTY 376

Query: 353 NTLMISFLQK 362
             L+ +  ++
Sbjct: 377 AILIHALCKR 386


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 183/405 (45%), Gaps = 77/405 (19%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI G C   +++ A++++ +M   G +PNV    TLI    +     + ++L + M
Sbjct: 453 TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM 512

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------L 136
           + NG+        P++FCY  LI GLC+ + V++ K L ++M +KGI  N         L
Sbjct: 513 IANGV-------LPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINL 565

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K  ++  A R  + M+  G+ P    YT L+ G+C VG    A++ F  M  KG +PD
Sbjct: 566 YSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPD 625

Query: 197 VFSYSV-----------------------------------LINGYCKNFNVEEAMNVSR 221
           + +YS                                    LI+G+CK  ++E+A  +  
Sbjct: 626 IRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYD 685

Query: 222 EMILNGFK-------------------------KIFNEMKLCNVVPETFTCNIFIDGLCK 256
           EM+ NG                           K+F+EM    + P+ +   I IDG  K
Sbjct: 686 EMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGK 745

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G++ + + LF   +  +    +  FNSLI   CK G    A ELF+ +  K L  ++V 
Sbjct: 746 EGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVT 804

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           Y ILI A GK   +++   L L ME      +  T+ +L++S+ Q
Sbjct: 805 YTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQ 849



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 162/345 (46%), Gaps = 26/345 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+ +LI GF  EGNI +A ++  +M T G + NV T + +I G+ + G M   + L 
Sbjct: 345 NRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLF 404

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM+       GI +P+ + Y  LIDG  K   + +  +L  EMK + +  +        
Sbjct: 405 NEML-----MAGI-EPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLI 458

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC  + L +AN +L+ M++ G+ P +F Y  L+  Y    +  +AI L   M   G +
Sbjct: 459 SGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVL 518

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+F Y+ LI G C+   VEEA  +  +M   G K            P   T   FI+  
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIK------------PNAHTYGAFINLY 566

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K+G +      F  +  S       I+  LI+G C  G    A   F  +  K L+ D+
Sbjct: 567 SKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDI 626

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            AY+ +IH+L K G+ K+   + L   + G   DV  +N+L+  F
Sbjct: 627 RAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGF 671



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 167/357 (46%), Gaps = 30/357 (8%)

Query: 17  RCYRPL---NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           RCYR     N   F+  I  F + G + +AS +     + G  P +  C+ L+  L +  
Sbjct: 162 RCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKAN 221

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            M L  K++  MV           P+V+ Y ++I   CK   V + K +  EM +K    
Sbjct: 222 MMGLFWKVYGSMVEAK------IVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKP 274

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           N          LC+   + EA  + +LMM++GL P   TYT L++G+C   +   A  +F
Sbjct: 275 NLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIF 334

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           +SM   G  P+ F+Y+ LI+G+ K  N+EEA+ +  EMI  G K         NVV    
Sbjct: 335 ESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLK--------LNVV---- 382

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T N  I G+ K G + + M LF  + ++  E     +N LI G  K      A EL  ++
Sbjct: 383 TYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEM 442

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             + L      Y++LI  L     ++K N +L  M  NG   +V  + TL+ +++Q+
Sbjct: 443 KARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQE 499



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 158/372 (42%), Gaps = 52/372 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM- 85
           +N LI G C    + +A  L+  M   G +PN  T    I    ++G + +  +  ++M 
Sbjct: 524 YNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDML 583

Query: 86  --------------VNGMGDFGGIYK--------------PNVFCYGSLIDGLCKDRLVD 117
                         + G  D G   +              P++  Y ++I  L K+    
Sbjct: 584 SSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTK 643

Query: 118 QTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           +   +F++    G+  +  L        CK+  + +A++L + M+  G+NP I  Y  L+
Sbjct: 644 EAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLI 703

Query: 170 N--GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           N  GYC  G +  A  LFD M  KG  PD + Y +LI+G  K  N+E+A++         
Sbjct: 704 NDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALS--------- 754

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
              +F+E +  +V   +   N  ID  CK+G V+E  ELF  +        +  +  LI 
Sbjct: 755 ---LFHEAQQKSVGSLS-AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILID 810

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
              K  + E A +LF  +  +N++ + + Y  L+ +  + G   K   L   ME  G A 
Sbjct: 811 AYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIAC 870

Query: 348 DVDTFNTLMISF 359
           D   +  +  ++
Sbjct: 871 DAIAYGVMASAY 882



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 161/387 (41%), Gaps = 70/387 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V +  LIKG C  GN  +A    K M   G  P++     +I  L + G         
Sbjct: 590 NNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTK------ 643

Query: 83  QEMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL- 137
                 MG F    K    P+VF Y SLI G CK+  +++   L+ EM   GIN N ++ 
Sbjct: 644 ----EAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVY 699

Query: 138 ---------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG----------------- 171
                    CK   L EA +L + M+ +G++P  + Y  L++G                 
Sbjct: 700 NTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEA 759

Query: 172 -----------------YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
                            +C  GKV  A  LFD M  K   P++ +Y++LI+ Y K   +E
Sbjct: 760 QQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMME 819

Query: 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           EA            +++F +M+  N++P T T    +    + G+  +++ LF  +E   
Sbjct: 820 EA------------EQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARG 867

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
                  +  +    CK G    A +L NK   + +  +   ++ LI  L KE QI    
Sbjct: 868 IACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVL 927

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQ 361
            LL  M +   +L   T NTL++ F +
Sbjct: 928 ELLSEMGKEELSLSSKTCNTLLLGFYK 954



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 148/339 (43%), Gaps = 53/339 (15%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           K   A+  F  F++    P  DV  +NSLI GFC EG+I  ASQL  +M   G  PN+  
Sbjct: 641 KTKEAMGVFLKFLKTGVVP--DVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVV 698

Query: 62  CDTLIT--GLRRTGNMNLTLKLHQEMV---------------NGMGDFGGIYKP------ 98
            +TLI   G  ++GN+    KL  EM+               +G G  G + K       
Sbjct: 699 YNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE 758

Query: 99  -------NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLLC----KKTKL 143
                  ++  + SLID  CK   V + ++LF +M DK +  N    T+L     K   +
Sbjct: 759 AQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMM 818

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            EA +L   M  R + P   TYT LL  Y  +G     I+LF  M  +G   D  +Y V+
Sbjct: 819 EEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVM 878

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
            + YCK     EA+ +  + ++ G K          +  + F   IF   LCK   +  V
Sbjct: 879 ASAYCKEGKSLEALKLLNKSLVEGIK----------LEDDVFDALIF--HLCKEKQISTV 926

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +EL   +      L  +  N+L+ G  K G  + AS++ 
Sbjct: 927 LELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVL 965



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 15/205 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV+ A   F   + +   P N VT+  LI  +     + +A QL   M T    PN  T 
Sbjct: 782 KVIEARELFDDMVDKKLTP-NIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTY 840

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-------RL 115
            +L+    + GN    + L ++M     +  GI   +   YG +    CK+       +L
Sbjct: 841 TSLLLSYNQIGNRFKMISLFKDM-----EARGI-ACDAIAYGVMASAYCKEGKSLEALKL 894

Query: 116 VDQTKDLFMEMKDKGINANTL-LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           ++++    ++++D   +A    LCK+ ++     LL  M +  L+    T   LL G+  
Sbjct: 895 LNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYK 954

Query: 175 VGKVNVAIALFDSMARKGFMPDVFS 199
            G  + A  +   M R G++P   S
Sbjct: 955 SGNEDEASKVLGVMQRLGWVPTSLS 979


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 171/366 (46%), Gaps = 38/366 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++  T+ +++KG C  G++  A  +VK+M   GCRPNV    TLI    +       +++
Sbjct: 415 ISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRV 474

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM        GI  P++FCY SLI GL K + +D+ +   +EM + G+  N       
Sbjct: 475 LKEMKE-----QGI-APDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF 528

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                + ++   A++ ++ M + G+ P     T L+N YC  GKV  A + + SM  +G 
Sbjct: 529 ISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGI 588

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK--------- 230
           + D  +Y+VL+NG  KN  V++A  + REM              ++NGF K         
Sbjct: 589 LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASS 648

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           IF+EM    + P     N+ + G C++G + +  EL   + +         + ++I G C
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G    A  LF+++  K LV D   Y  L+    +   +++    +    + GCA    
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA-ITIFGTNKKGCASSTA 767

Query: 351 TFNTLM 356
            FN L+
Sbjct: 768 PFNALI 773



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 175/386 (45%), Gaps = 45/386 (11%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R C    N V    LI  +C +G + +A    + M   G   +  T   L+ GL +   
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++   ++ +EM  G G       P+VF YG LI+G  K   + +   +F EM ++G+  N
Sbjct: 608 VDDAEEIFREM-RGKG-----IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661

Query: 135 TLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            ++        C+  ++ +A  LL+ M  +GL+P   TY  +++GYC  G +  A  LFD
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV---------SREMILNG-------FKK 230
            M  KG +PD F Y+ L++G C+  +VE A+ +         S     N        F K
Sbjct: 722 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGK 781

Query: 231 IFNEMKLCNVV----------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
              + ++ N +          P   T NI ID LCK G++    ELF  ++ +N    V 
Sbjct: 782 TELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVI 841

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            + SL+ G  K G       +F++     +  D + Y+++I+A  KEG   K   L+  M
Sbjct: 842 TYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQM 901

Query: 341 -----EENGCALDVDTFNTLMISFLQ 361
                 ++GC L + T   L+  F +
Sbjct: 902 FAKNAVDDGCKLSISTCRALLSGFAK 927



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 155/388 (39%), Gaps = 87/388 (22%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           KV+ A  A+ S + +    L D  T+  L+ G      + DA ++ ++M   G  P+V +
Sbjct: 572 KVIEACSAYRSMVDQGI--LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFS 629

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
              LI G  + GNM     +  EMV  G+        PNV  Y  L+ G C+   +++ K
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGL-------TPNVIIYNMLLGGFCRSGEIEKAK 682

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L  EM  KG++ N +         CK   L EA RL + M  +GL P  F YT L++G 
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742

Query: 173 CLVGKVNVAIALFD---------------------------------------SMARKGF 193
           C +  V  AI +F                                        S  R G 
Sbjct: 743 CRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG- 801

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK--------- 230
            P+  +Y+++I+  CK  N+E A  +  +M              +LNG+ K         
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-----CELFVEIFNSL 285
           +F+E     + P+    ++ I+   K G   + + L   +   N     C+L +    +L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVAD 313
           + G  K G  E+A ++   +     + D
Sbjct: 922 LSGFAKVGEMEVAEKVMENMVRLQYIPD 949



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 147/348 (42%), Gaps = 48/348 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI   C  GN++     + K   F       T          T N++  LKL + M
Sbjct: 223 TYHMLIIAHCRAGNVQ-----LGKDVLFKTEKEFRTA---------TLNVDGALKLKESM 268

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +  G+        P  + Y  LIDGLCK + ++  K L +EM   G++ +          
Sbjct: 269 ICKGL-------VPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV---AIALFDSMARKGF 193
           L K      A  L+  M+  G+N   + Y   +   C++ K  V   A ALFD M   G 
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCI---CVMSKEGVMEKAKALFDGMIASGL 378

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P   +Y+ LI GYC+  NV +              ++  EMK  N+V   +T    + G
Sbjct: 379 IPQAQAYASLIEGYCREKNVRQGY------------ELLVEMKKRNIVISPYTYGTVVKG 426

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           +C +G +     +   +  S C   V I+ +LI+   +   F  A  +  ++  + +  D
Sbjct: 427 MCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +  YN LI  L K  ++ +    L+ M ENG   +  T+   +  +++
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIE 534



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 156/373 (41%), Gaps = 40/373 (10%)

Query: 13  SFIRRCYRPL-----NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           S I RC +       + V F  L  G+  +G I +A  +          P ++ C  L+ 
Sbjct: 135 SSIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLD 194

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
            L R   ++L   +++ MV     F      +V  Y  LI   C+   V   KD+  +  
Sbjct: 195 ALLRWNRLDLFWDVYKGMVERNVVF------DVKTYHMLIIAHCRAGNVQLGKDVLFKT- 247

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +K     TL      +  A +L E M+ +GL P+ +TY  L++G C + ++  A +L   
Sbjct: 248 EKEFRTATL-----NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVE 302

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------------------- 228
           M   G   D  +YS+LI+G  K  N + A  +  EM+ +G                    
Sbjct: 303 MDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGV 362

Query: 229 ----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
               K +F+ M    ++P+       I+G C+  +V +  EL   ++  N  +    + +
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +++G C  G  + A  +  ++       +VV Y  LI    +  +      +L  M+E G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 345 CALDVDTFNTLMI 357
            A D+  +N+L+I
Sbjct: 483 IAPDIFCYNSLII 495



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 31/211 (14%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++VL  LM  GSF R  +   NDVT+N +I   C EGN+  A +L  +M      P V T
Sbjct: 786 TEVLNRLMD-GSFDR--FGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVIT 842

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             +L+ G  + G       +  E +       GI +P+   Y  +I+   K+ +  +   
Sbjct: 843 YTSLLNGYDKMGRRAEMFPVFDEAIAA-----GI-EPDHIMYSVIINAFLKEGMTTKALV 896

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           L  +M  K  NA    CK +                    I T   LL+G+  VG++ VA
Sbjct: 897 LVDQMFAK--NAVDDGCKLS--------------------ISTCRALLSGFAKVGEMEVA 934

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
             + ++M R  ++PD  +   LIN  C + N
Sbjct: 935 EKVMENMVRLQYIPDSATVIELINESCISSN 965


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 181/369 (49%), Gaps = 32/369 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SKV+ A       + +   P +D T+N++I G+   G I+DAS+++K     G  P+  T
Sbjct: 272 SKVVEAENYLHKMVNKGLEP-DDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFT 330

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             +LI G+ + G+++  L L +E +      G   KP++  Y +LI GL +  LV +   
Sbjct: 331 YCSLIIGVCQDGDIDHALALFEEAL------GKGLKPSIVLYNTLIKGLSQQGLVLKALQ 384

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  +M  +G++ +          LCK   + +AN LL   + +G  P IFT+  L++GYC
Sbjct: 385 LMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYC 444

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
              K++ AI + DSM   G  PDV +Y+ ++NG CK    E+ M   + ++  G      
Sbjct: 445 KRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKG------ 498

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCK 291
                  +P   T NI I+ LCK   V E ++L    EI N  L  +   F ++I G C 
Sbjct: 499 ------CLPNIITYNILIESLCKARKVTEALDLLE--EIRNRGLIPDPVSFGTVISGFCN 550

Query: 292 FGIFEIASELFNKLSCKNLVADVVA-YNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
            G  + A +LF ++  +  +   VA YNI+I+A  ++  +     L   M + GC  D  
Sbjct: 551 NGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSY 610

Query: 351 TFNTLMISF 359
           T+  ++  F
Sbjct: 611 TYRVMIDGF 619



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 154/336 (45%), Gaps = 40/336 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK- 80
           LN V + ++I GF  E    +A +L  KM   G  P++ T + L+  L + G++    K 
Sbjct: 179 LNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKL 238

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           L++ + NG+        PN+F +   I GLC+                KG+    L    
Sbjct: 239 LNKVLKNGVC-------PNLFTFNIFIQGLCR----------------KGV----LEGAN 271

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
           +K+VEA   L  M+ +GL P  FTY  ++ GY  VGK+  A  +      KGF+PD F+Y
Sbjct: 272 SKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTY 331

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
             LI G C++ +++ A+ +  E +  G K            P     N  I GL + G V
Sbjct: 332 CSLIIGVCQDGDIDHALALFEEALGKGLK------------PSIVLYNTLIKGLSQQGLV 379

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
           L+ ++L   +        +  +N +I G CK G    A+ L N    K  + D+  +N L
Sbjct: 380 LKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTL 439

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           I    K  ++     +L SM  +G   DV T+N+++
Sbjct: 440 IDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSIL 475



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 160/352 (45%), Gaps = 33/352 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N+++      G    A ++  +M   G  P+V T    I    RT      L+L    
Sbjct: 113 SYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRL---- 168

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LL 137
           +N M   G      V+C  ++I G  ++    +  +LF +M   GI  +         +L
Sbjct: 169 LNNMPSQGCELNAVVYC--TVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHIL 226

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG-------KVNVAIALFDSMAR 190
           CKK  L E  +LL  +++ G+ P +FT+   + G C  G       KV  A      M  
Sbjct: 227 CKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVN 286

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           KG  PD F+Y+ +I GY K   +++A  + ++    GF            VP+ FT    
Sbjct: 287 KGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGF------------VPDEFTYCSL 334

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           I G+C++G +   + LF        +  + ++N+LI+G  + G+   A +L N +S + +
Sbjct: 335 IIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGM 394

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             D+  YN++I+ L K G +   N LL +    G   D+ TFNTL+  + ++
Sbjct: 395 SPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKR 446



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 119/259 (45%), Gaps = 28/259 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I + Y P +  TFN+LI G+C    + +A  ++  M + G  P+V T ++++ GL +   
Sbjct: 425 IAKGYLP-DIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAK 483

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
               ++  + M+   G       PN+  Y  LI+ LCK R V +  DL  E++++G+  +
Sbjct: 484 PEDVMETFK-MIMEKGCL-----PNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPD 537

Query: 135 TL--------LCKKTKLVEANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
            +         C    L EA +L   M Q+  +   + TY  ++N +     +++A  LF
Sbjct: 538 PVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLF 597

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             M  KG  PD ++Y V+I+G+CK  NV    +   + I  GF            VP   
Sbjct: 598 HEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGF------------VPSLT 645

Query: 246 TCNIFIDGLCKNGHVLEVM 264
           T    I+ LC    V E +
Sbjct: 646 TFGRVINCLCVQHRVHEAV 664



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 25/250 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+NS++ G C      D  +  K +   GC PN+ T + LI  L +   +   L L +E
Sbjct: 469 ITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEE 528

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           + N     G I  P+   +G++I G C +  +D+   LF  M+ +    +T+        
Sbjct: 529 IRNR----GLI--PDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMIN 582

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
              +K  +  A +L   M  +G +P  +TY  +++G+C VG VN            GF+P
Sbjct: 583 AFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVP 642

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----IFNEMKLCNVVPETFTCNIF 250
            + ++  +IN  C    V EA+ +   M+  G        IF+  K     P+     I 
Sbjct: 643 SLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVVTIFDADKKAVAAPK-----II 697

Query: 251 IDGLCKNGHV 260
           ++ L K  H+
Sbjct: 698 VEDLLKKSHI 707



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 139/330 (42%), Gaps = 48/330 (14%)

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVF-----CYGSLIDGLCKDRLVDQTKDLFMEMKD---- 128
            LK  ++ +  +  F  + K + F      Y  +I+ L      D  + + MEM+     
Sbjct: 13  VLKYQKDPLKALSIFNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDN 72

Query: 129 ---KGINANTL--LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
              +G+  + +    +K K+ EA  + E M      P IF+Y  ++N     G  N A  
Sbjct: 73  SLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHK 132

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF- 228
           ++  M  +G  PDV ++++ I  +C+      A+ +   M              +++GF 
Sbjct: 133 VYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFY 192

Query: 229 --------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF-PTLEISNCE-LF 278
                    ++FN+M    + P   T N  +  LCK GH+ E  +L    L+   C  LF
Sbjct: 193 EENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLF 252

Query: 279 VEIFNSLIRGCCKFGIFEIASE-------LFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
              FN  I+G C+ G+ E A+          +K+  K L  D   YN +I+   K G+I+
Sbjct: 253 T--FNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQ 310

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             + +L   +  G   D  T+ +L+I   Q
Sbjct: 311 DASRILKDAKFKGFVPDEFTYCSLIIGVCQ 340


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 173/349 (49%), Gaps = 27/349 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   FN L+ G+   G +R+A  + + M   G  P+V T   +I    R G+M+  +   
Sbjct: 385 NQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAM--- 441

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +  N M D G   +PN   Y  LI G C    + + ++L  E+++KG+    L      
Sbjct: 442 -DKFNHMIDKG--VEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLI 498

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+ ++ EA R+ +++++ G    +  +T L++GYCL+GK++ A  + D+M   G  
Sbjct: 499 NHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIE 558

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ +Y  L+NG CKN  +++ + + RE++  G K            P TFT  I +DGL
Sbjct: 559 PDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVK------------PTTFTYGIILDGL 606

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
              G      E+F  +  S   + +  ++ L+ G C+    E A  +F KL   N+  D+
Sbjct: 607 FHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDI 666

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           V  NI+I  + K  + ++   L  S+ + G    V T+ T+M+  L KE
Sbjct: 667 VILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTY-TIMMENLIKE 714



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 160/347 (46%), Gaps = 26/347 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N V +++++ G   EG + +A  L  +M   G  PNV T +++I  L +   ++    
Sbjct: 208 PCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQG 267

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           + ++MV      G   +P+   Y +LI G        Q   +F EM  +G+  NT+    
Sbjct: 268 ILRQMV------GNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCST 321

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  ++ EA    + M+ +G    I +Y+ LL+GY   G +     LF+ M R G
Sbjct: 322 FVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDG 381

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
            +P+   +++L+NGY K   V EAM             IF +M+   + P+  T    I 
Sbjct: 382 IVPNQHVFNILVNGYAKCGMVREAMF------------IFEDMQKRGLNPDVLTYLAVIH 429

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
             C+ G + + M+ F  +     E    ++  LI+G C  G    A EL  ++  K L  
Sbjct: 430 AFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGP 489

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            ++++  LI+ L KEG++ +   +   +   G   DV+ F +L+  +
Sbjct: 490 CILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGY 536



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 165/367 (44%), Gaps = 37/367 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+NS+I   C    +  A  ++++M   G +P+  T +TLI G    G     ++
Sbjct: 243 PPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVR 302

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
           + +EM +      G+  PN     + +  LCK   +++ ++ F  M  KG     I+ +T
Sbjct: 303 MFKEMTSR-----GVI-PNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYST 356

Query: 136 LLCKKTK---LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           LL        LV+ + L  LM++ G+ P    +  L+NGY   G V  A+ +F+ M ++G
Sbjct: 357 LLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRG 416

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGF---------K 229
             PDV +Y  +I+ +C+  ++++AM+    MI              + GF         +
Sbjct: 417 LNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAE 476

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
           ++  E++   + P   +    I+ LCK G V E   +F  +  +  +  V IF SLI G 
Sbjct: 477 ELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGY 536

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C  G    A  + + +    +  D+V Y  L++   K G+I     L   +   G     
Sbjct: 537 CLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTT 596

Query: 350 DTFNTLM 356
            T+  ++
Sbjct: 597 FTYGIIL 603



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 154/354 (43%), Gaps = 45/354 (12%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTL 65
           A   FG  +R+  +  + +  +SL++G C      +A   L  +M   GC P+  +  T+
Sbjct: 122 AFAFFGCLLRQGMKA-DVIVVSSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTV 180

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  +   G     L + +  V      GG    NV  Y +++ GL K+  V +  DLF E
Sbjct: 181 LKSVCDDGRSQWALDILRMAVKQ----GGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHE 236

Query: 126 MKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           M                            Q+G+ P + TY  +++  C    V+ A  + 
Sbjct: 237 MT---------------------------QQGVPPNVVTYNSVIHALCKARAVDKAQGIL 269

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             M   G  PD  +Y+ LI+GY      ++A+            ++F EM    V+P T 
Sbjct: 270 RQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAV------------RMFKEMTSRGVIPNTV 317

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           TC+ F+  LCK+G + E  E F ++     +L +  +++L+ G    G     S LFN +
Sbjct: 318 TCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLM 377

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
               +V +   +NIL++   K G +++  ++   M++ G   DV T+  ++ +F
Sbjct: 378 VRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAF 431



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 139/336 (41%), Gaps = 56/336 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           ++F SLI   C EG + +A ++   +   G + +V    +LI G    G M+   ++H  
Sbjct: 492 LSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDA 551

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           MV+      GI +P++  YG+L++G CK+  +D    LF E+                  
Sbjct: 552 MVSV-----GI-EPDIVTYGTLVNGCCKNGRIDDGLILFREL------------------ 587

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                    + +G+ P  FTY  +L+G    G+   A  +F  M   G    + +YS+L+
Sbjct: 588 ---------LHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILL 638

Query: 205 NGYCKNFNVEEAMNVSRE---------------MILNGFKK--------IFNEMKLCNVV 241
            G C+N   EEA+ V ++               MI   FK         +F  +    +V
Sbjct: 639 TGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLV 698

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P   T  I ++ L K G V E   +F  +  S         N ++R   + G    A   
Sbjct: 699 PTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKAGIY 758

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
             ++  K+++ +    ++L+     +G+ ++   LL
Sbjct: 759 MCRVDGKSILFEASTASMLLSLFSCKGKHREHLNLL 794



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 13/215 (6%)

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
           NR+      R   P ++TY+ L++  C   ++++A A F  + R+G   DV   S L+ G
Sbjct: 88  NRMSTGTGPRVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRG 147

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            C     +EA++V           +F+ M     VP+  + +  +  +C +G     +++
Sbjct: 148 LCDAKRTDEAVDV-----------LFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDI 196

Query: 267 F--PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                 +   C   V ++++++ G  K G    A +LF++++ + +  +VV YN +IHAL
Sbjct: 197 LRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHAL 256

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            K   + K   +L  M  NG   D  T+NTL+  +
Sbjct: 257 CKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGY 291


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 176/370 (47%), Gaps = 39/370 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL   G  ++  + P + VTF SL+ GFC      +A  LV ++   G  PNV   +T+I
Sbjct: 133 ALSCLGKMMKLGFEP-SIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTII 191

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             L   G +N  L + + M   MG      +P+V  Y SLI  L        +  +  +M
Sbjct: 192 DSLCEKGQVNTALDVLKHM-KKMG-----IRPDVVTYNSLITRLFHSGTWGVSARILSDM 245

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              GI+ + +          K+ +L+EA +    M+QR +NP I TY  L+NG C+ G +
Sbjct: 246 MRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLL 305

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV----SREMI---------- 224
           + A  + + +  KGF P+  +Y+ LINGYCK   V++ M +    SR+ +          
Sbjct: 306 DEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTL 365

Query: 225 ---------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                     +  +K+   M  C V P+ +T NI +DGLC +G + + +     L+ S  
Sbjct: 366 YQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKT 425

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
            + +  +N +I+G CK    E A  LF  L+ K +  DV+ Y  ++  L ++   ++ + 
Sbjct: 426 VVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHE 485

Query: 336 LLLSME-ENG 344
           L   M+ E+G
Sbjct: 486 LYRKMQKEDG 495



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 159/339 (46%), Gaps = 26/339 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +F +LI  FC    +  A   + KM   G  P++ T  +L+ G          + L  ++
Sbjct: 116 SFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQI 175

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK--TKL 143
           V G+G     Y+PNV  Y ++ID LC+   V+   D+   MK  GI  + +      T+L
Sbjct: 176 V-GLG-----YEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRL 229

Query: 144 VEAN------RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
             +       R+L  MM+ G++P + T++ L++ Y   G++  A   ++ M ++   P++
Sbjct: 230 FHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNI 289

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LING C +  ++EA  V   ++  GF             P   T N  I+G CK 
Sbjct: 290 VTYNSLINGLCIHGLLDEAKKVLNVLVSKGF------------FPNAVTYNTLINGYCKA 337

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V + M++   +     +     +N+L +G C+ G F  A ++  ++    +  D+  +
Sbjct: 338 KRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTF 397

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           NIL+  L   G+I K    L  ++++   + + T+N ++
Sbjct: 398 NILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIII 436



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 31/295 (10%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL---CKKTKLVEANRL 149
           P++  +  L+  + K    +    LF  ++  GI+ +     TL+   C+  +L  A   
Sbjct: 77  PSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSC 136

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L  MM+ G  P I T+  L+NG+C V +   A++L D +   G+ P+V  Y+ +I+  C+
Sbjct: 137 LGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 196

Query: 210 NFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFT 246
              V  A++V + M   G +                       +I ++M    + P+  T
Sbjct: 197 KGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVIT 256

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            +  ID   K G +LE  + +  +   +    +  +NSLI G C  G+ + A ++ N L 
Sbjct: 257 FSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLV 316

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            K    + V YN LI+   K  ++     +L  M  +G   D  T+NTL   + Q
Sbjct: 317 SKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQ 371


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 159/338 (47%), Gaps = 28/338 (8%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N  I   C +  + DA Q+V+KM T G  P+V T  T+++GL         + L +EMV 
Sbjct: 267 NIYIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVK 326

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN-----ANTLL---CK 139
              D     KP+VF  G+LI GLCK+  VD+  +L   M    I       N L+    +
Sbjct: 327 R--DL----KPDVFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWR 380

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
              + +A +++  M   G  P I TY  LLN YC +G +  A  L   M   G  PD +S
Sbjct: 381 AGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYS 440

Query: 200 YSVLINGYCKNFNVEEAMN-VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           Y+ L+ G CK   +++A   VS  M + GF         C+ V    +CNI ID  CK  
Sbjct: 441 YNQLLKGLCKTHQLDKAFAFVSDHMEVGGF---------CDTV----SCNILIDAFCKTK 487

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            V   +ELF  +     +     + +LI G    G + +A ELF ++    +  +V  YN
Sbjct: 488 KVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYN 547

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           I++H L K G  K+   +   M +   + D  TFNTL+
Sbjct: 548 IMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNTLI 585



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 155/361 (42%), Gaps = 49/361 (13%)

Query: 36  MEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGG 94
           M+GN    S+ + ++ + G   + +    L++G  R G  +  ++   EMV +G  +FG 
Sbjct: 135 MDGNFALLSEFLGRVKSQGVALHRSLYRILLSGYVRAGKFDSVIETFDEMVMSGCREFGV 194

Query: 95  IYKPNV----------------------------FCYGSLIDGLCKDRLVDQTKDLFMEM 126
            Y   +                            F Y   I  LC+   ++  ++L ++M
Sbjct: 195 DYNRYIGVLVKNCCFDLVEKYYDMALAKGFCLTPFTYSRWISALCQSNRIELVQELLVDM 254

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G + +          LCK+ +L +A +++E M  +G +P + TY  +++G C   K 
Sbjct: 255 DKLGCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKF 314

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             AI L++ M ++   PDVFS   LI G CKN  V+EA  ++  M+         E+ +C
Sbjct: 315 AEAIGLWEEMVKRDLKPDVFSCGALIFGLCKNNKVDEAFELASRMLTLDI-----ELSVC 369

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
                    N  I G  + G + +  ++   +  + CE  +  +N L+   C  G+ E A
Sbjct: 370 -------IYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYCTIGMMEKA 422

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            +L  K+    +  D  +YN L+  L K  Q+ K    +    E G   D  + N L+ +
Sbjct: 423 EKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDTVSCNILIDA 482

Query: 359 F 359
           F
Sbjct: 483 F 483



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 134/306 (43%), Gaps = 26/306 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+LI GF   G+I  A +++  M T GC P++ T + L+      G M    KL ++M 
Sbjct: 371 YNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKM- 429

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
               +  G+  P+ + Y  L+ GLCK   +D+      +  + G     ++ N L+   C
Sbjct: 430 ----ETSGV-NPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDTVSCNILIDAFC 484

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  K+  A  L + M  +G+     TY  L+NG   VG  N+A  LF+ M      P+V 
Sbjct: 485 KTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVN 544

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            Y+++++  CK  + + A            + IF+ M    V P+T T N  I  L K  
Sbjct: 545 LYNIMLHHLCKVGHFKRA------------QTIFSHMIQKEVSPDTVTFNTLIYWLGKRS 592

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
             +E + LF  +     E     F  LI G    G   +A E++  +    ++ D     
Sbjct: 593 RAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEYMMENGIILDREVSE 652

Query: 319 ILIHAL 324
            LI  L
Sbjct: 653 RLISVL 658



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 14/182 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V+ N LI  FC    ++ A +L K+M   G + +  T  TLI GL   G  NL  +L 
Sbjct: 472 DTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELF 531

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M+N   D      PNV  Y  ++  LCK     + + +F  M  K ++ +T+      
Sbjct: 532 EQMLNAQID------PNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNTLI 585

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K+++ +EA  L + M  RG+ P   T+  L++G    GK  +A  +++ M   G +
Sbjct: 586 YWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEYMMENGII 645

Query: 195 PD 196
            D
Sbjct: 646 LD 647


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 158/317 (49%), Gaps = 26/317 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            + V F+ L+K +  EG I++     +K+   GC P+V +C+ L+ GL +   ++   ++
Sbjct: 177 WDPVIFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQV 236

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           ++EM        GI+ PN + +  L    C+D  VD+  D    M+++G     +  NTL
Sbjct: 237 YKEMARV-----GIH-PNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTL 290

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   C+K +L +A  L  +M +R + P + +YT L+NG C  GKV  A  LF  M  +G 
Sbjct: 291 ISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGL 350

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ S++ LI GYCK   + E+ ++  EMI +G            + P+  TC + I+G
Sbjct: 351 NPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSG------------ICPDKVTCQVLIEG 398

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             K   ++  + L   LE     +  +I++ L+   C+ G    A  L  ++S +  V  
Sbjct: 399 YRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPG 458

Query: 314 VVAYNILIHALGKEGQI 330
           V  YN LI +L K   I
Sbjct: 459 VEIYNKLIESLCKSDSI 475



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 138/321 (42%), Gaps = 26/321 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++ +L+ G C EG +R+A QL  +M   G  P++ + +TLI G  + G M  +  L  E
Sbjct: 320 VSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHE 379

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------L 136
           M+       GI    V C   LI+G  K+  +    +L +E++  G+  +T         
Sbjct: 380 MIGS-----GICPDKVTC-QVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVS 433

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C++ +   A  LL+ + QRG  P +  Y  L+   C    +  A+ +   M  +   P 
Sbjct: 434 ICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPS 493

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y  LI   C+     EA ++  EM+ +G            ++P+   C   +   CK
Sbjct: 494 AITYKALICCLCRTSRSMEAESLMEEMLQSG------------MLPDPDICRALMHVYCK 541

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + +   L  T          E +N+L++  C+        EL +++       ++  
Sbjct: 542 ERDIGKAETLLQTFAKEFQIFDSESYNTLVKTYCEDADATRLMELQDRMLKVGFAPNIQT 601

Query: 317 YNILIHALGKEGQIKKENYLL 337
           +  +IH L K   ++K+  LL
Sbjct: 602 FRQMIHGLWKAMAVEKDKLLL 622



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 137/335 (40%), Gaps = 47/335 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TFN L   FC +G++   +  +++M   G  P++ T +TLI+   R G ++    L+
Sbjct: 248 NSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLY 307

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
           + M      +     P++  Y +L++GLCK+  V +   LF  M  +G            
Sbjct: 308 RIM------YRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRG------------ 349

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                          LNP I ++  L+ GYC  GK+  + +L   M   G  PD  +  V
Sbjct: 350 ---------------LNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQV 394

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ETFTCNIFIDGLCKNGHVL 261
           LI GY K   +  A+N+  E+   G             VP  T   +  +  +C+ G   
Sbjct: 395 LIEGYRKEARIVSALNLVVELERFG-------------VPISTDIYDYLMVSICEEGRPF 441

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
               L   +        VEI+N LI   CK      A  + +++  +N+    + Y  LI
Sbjct: 442 AAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALI 501

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             L +  +  +   L+  M ++G   D D    LM
Sbjct: 502 CCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALM 536



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 14/202 (6%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
            +PVIF    L+  Y   G +      F  +   G +P V S + L+NG  K   +++  
Sbjct: 177 WDPVIFDM--LVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCW 234

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            V +EM   G            + P ++T NI     C++G V +V +    +E    E 
Sbjct: 235 QVYKEMARVG------------IHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEP 282

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            +  +N+LI   C+ G  + A  L+  +  +N++ D+V+Y  L++ L KEG++++ + L 
Sbjct: 283 DIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLF 342

Query: 338 LSMEENGCALDVDTFNTLMISF 359
             M   G   D+ +FNTL+  +
Sbjct: 343 HRMIHRGLNPDIVSFNTLICGY 364



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 113/285 (39%), Gaps = 73/285 (25%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A   F   I R   P + V+FN+LI G+C EG +R++  L+ +M   G  P+  TC
Sbjct: 334 KVREAHQLFHRMIHRGLNP-DIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTC 392

Query: 63  DTLITGLRRTGN----MNLTLKLHQ---EMVNGMGDFGGI-------------------- 95
             LI G R+       +NL ++L +    +   + D+  +                    
Sbjct: 393 QVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQ 452

Query: 96  --YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVE 145
             Y P V  Y  LI+ LCK   +     +  EM  + I  + +        LC+ ++ +E
Sbjct: 453 RGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSME 512

Query: 146 ANRLLELMMQRGLNP--------------------------------VIF---TYTPLLN 170
           A  L+E M+Q G+ P                                 IF   +Y  L+ 
Sbjct: 513 AESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAKEFQIFDSESYNTLVK 572

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
            YC        + L D M + GF P++ ++  +I+G  K   VE+
Sbjct: 573 TYCEDADATRLMELQDRMLKVGFAPNIQTFRQMIHGLWKAMAVEK 617



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 99/204 (48%), Gaps = 12/204 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           +++ G  P + +   LLNG   + +++    ++  MAR G  P+ +++++L + +C++ +
Sbjct: 205 IVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGD 264

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           V++  +    M   GF+            P+  T N  I   C+ G + +   L+  +  
Sbjct: 265 VDKVNDFLERMEEEGFE------------PDIVTYNTLISCYCRKGRLDDAFYLYRIMYR 312

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
            N    +  + +L+ G CK G    A +LF+++  + L  D+V++N LI    KEG++++
Sbjct: 313 RNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRE 372

Query: 333 ENYLLLSMEENGCALDVDTFNTLM 356
              LL  M  +G   D  T   L+
Sbjct: 373 SRSLLHEMIGSGICPDKVTCQVLI 396


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 180/407 (44%), Gaps = 73/407 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++VT+ +L+ GFC    +  A ++   M   G  P+   C  +I  LR+   +     L 
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLA 326

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +    +GD G +  PNVF Y +LID LCK+   D    LF EM  +G+  N +      
Sbjct: 327 CK----LGDLGMV--PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILI 380

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+  + +A  L + M  +G+   ++ Y  L+NGYC  G ++ A  L   M ++G  
Sbjct: 381 HALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLT 440

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKI 231
           P   SYS LI G C+N ++   M + REM              ++NGF          ++
Sbjct: 441 PTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARL 500

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC- 290
           F++M   NV+P   T N+ I+G C  G++ +  +L+  +     +     + SLI G C 
Sbjct: 501 FDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCL 560

Query: 291 ----------------------------------KFGIFEIASELFNKLSCKNLVADVVA 316
                                             + G F     L+++++ + +  D+V+
Sbjct: 561 TSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVS 620

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + I+++A  K+   +K   L   M+E G   D D F T MI  L KE
Sbjct: 621 FTIIVYAALKQHDKEKSCVLFREMKEQGVKPD-DIFYTCMIDALSKE 666



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 168/371 (45%), Gaps = 50/371 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTFN +I+G+C+ GNIR A QL  +M   G +P+  T  +LI+GL  T  ++   +  
Sbjct: 512 NEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFV 571

Query: 83  QEMVNGM------------------GDFGGIY-----------KPNVFCYGSLIDGLCKD 113
            ++ N                    G F   Y           K ++  +  ++    K 
Sbjct: 572 ADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQ 631

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
              +++  LF EMK++G+  + +        L K+  +++A    + M+  G +P   T+
Sbjct: 632 HDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTH 691

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L+N  C  G +  A  L   M     +P+ F+Y+  ++ +    ++E+A ++   M+ 
Sbjct: 692 TVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML- 750

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
                   +  L ++V    + NI I GLCK G + E ++L   +  S        ++++
Sbjct: 751 --------QGHLASIV----SFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTI 798

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I   CK G    A EL+N++  K L  DVVAYNI I      G+  K   +  +M  +G 
Sbjct: 799 IHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGV 858

Query: 346 ALDVDTFNTLM 356
             + DT+  L+
Sbjct: 859 QPNWDTYRALL 869



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 130/290 (44%), Gaps = 31/290 (10%)

Query: 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
           + Y + I   C+ R +D  + L + M+ +G+ A+ +        LCK  ++ EA  +  +
Sbjct: 199 YVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNV 258

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+  G+     TY  L+ G+C + ++ +A+ +   M R GF+P   + S +I+   K   
Sbjct: 259 MVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKEL 318

Query: 213 VEEAMNVSRE-----MILNGFK------------------KIFNEMKLCNVVPETFTCNI 249
           VEEA +++ +     M+ N F                   ++F EM    + P   T  I
Sbjct: 319 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 378

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            I  LCK G + + + LF  +     ++ V  +NSLI G CK G  + A  L + +  + 
Sbjct: 379 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L     +Y+ LI  L + G +     L   M E G A +  TF  L+  F
Sbjct: 439 LTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGF 488



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 114/266 (42%), Gaps = 20/266 (7%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLL 150
           N +    ++  L K R     +DLF +M   G++ +  +        C+   L  A  L+
Sbjct: 162 NQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV 221

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             M   G+      Y  L+ G C   +V  A+ + + M   G   D  +Y  L+ G+C+ 
Sbjct: 222 VRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRM 281

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
             +E A+ ++ +MI  GF            VP    C+  ID L K   V E   L   L
Sbjct: 282 EELEMALRITHDMIRLGF------------VPSEANCSFMIDELRKKELVEEAFSLACKL 329

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                   V  +N+LI   CK   F+ A  LF +++ + L  + V Y ILIHAL K G I
Sbjct: 330 GDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMI 389

Query: 331 KKENYLLLSMEENGCALDVDTFNTLM 356
           +    L   M + G  + V  +N+L+
Sbjct: 390 EDALCLFDKMRDKGIKVTVYPYNSLI 415



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 16/211 (7%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           ++ AL  +   +   Y P N VT   LI   C  G +  A  L K+M      PN  T +
Sbjct: 669 MIQALNCWDQMVVDGYSP-NTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYN 727

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
             +      G+M     LH  M+ G       +  ++  +  LI GLCK   + +  DL 
Sbjct: 728 CFLDYFATEGDMEKAKDLHSAMLQG-------HLASIVSFNILIKGLCKAGKIQEAIDLM 780

Query: 124 MEMKDKG-----INANTLLCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLV 175
            ++ + G     I+ +T++ +  K+ + N+  EL   M+ +GL P +  Y   +    + 
Sbjct: 781 SKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVH 840

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLING 206
           G+ + A+ ++ +M R G  P+  +Y  L++G
Sbjct: 841 GESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 49/250 (19%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L L +  G+    +T + +L     + +  +A  LFD M + G   D + Y+  I  YC
Sbjct: 150 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYC 209

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL-- 266
           ++ N++ A  +   M   G K         + VP     N+ + GLCKN  V E +E+  
Sbjct: 210 ESRNLDGARGLVVRMESEGVK--------ASAVP----YNVLMYGLCKNMRVQEAVEVKN 257

Query: 267 -------------FPTLEISNC-----ELFVEIFNSLIR-------GCCKFGI-----FE 296
                        + TL    C     E+ + I + +IR         C F I      E
Sbjct: 258 VMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKE 317

Query: 297 IASELFNKLSCK----NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           +  E F+ L+CK     +V +V AYN LI  L K  +    + L   M   G   +  T+
Sbjct: 318 LVEEAFS-LACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTY 376

Query: 353 NTLMISFLQK 362
             L+ +  ++
Sbjct: 377 AILIHALCKR 386


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 174/371 (46%), Gaps = 49/371 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V +N+LI G+C  GN+ DA ++   M + G  PN  T +++I G  + G M     + 
Sbjct: 350 NEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECIL 409

Query: 83  QEMVN-----GMGDFGGI------------------------YKPNVFCYGSLIDGLCKD 113
           +EM++       G F  I                         +PN     +L+ GLCK+
Sbjct: 410 EEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKE 469

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
                  +L+  + +KG  AN +        LCK   + EA RLL+ M++RG      TY
Sbjct: 470 GKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITY 529

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L++G C  GKV     L   M ++G  PD F+Y++LI+G C+   ++EA+N       
Sbjct: 530 NTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVN------- 582

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
                ++NE K  ++VP  +T  + IDG CK   + E  +LF  L   N EL   ++N+L
Sbjct: 583 -----LWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTL 637

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           IR  C+ G    A +L + +  K +      Y+ LIH +   G+++    L+  M + G 
Sbjct: 638 IRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGL 697

Query: 346 ALDVDTFNTLM 356
             +V  +  L+
Sbjct: 698 LPNVVCYTALI 708



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 165/348 (47%), Gaps = 61/348 (17%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ +T+N+LI G C EG + +  +L  +M   G  P+  T + LI G+ R G ++  + L
Sbjct: 524 LDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNL 583

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
             E  +   D      PNV+ YG +IDG CK   +++ + LF E+  + +  N+++    
Sbjct: 584 WNECKSR--DL----VPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTL 637

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+    VEA +L + M  +G+ P   TY+ L++G C +G++  A  L D M ++G 
Sbjct: 638 IRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGL 697

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P+V  Y+ LI GYCK   +++ +NV              EM   ++ P   T  + IDG
Sbjct: 698 LPNVVCYTALIGGYCKLGQMDKVVNV------------LQEMSSYDIHPNKITYTVMIDG 745

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             K+G +                                   + A++L +++  K +V D
Sbjct: 746 YSKSGDM-----------------------------------KTAAKLLHEMVGKGIVPD 770

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            V YN+L +   KEG+I++   +   M + G  LD  T+ TL+  + Q
Sbjct: 771 TVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQ 818



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 155/338 (45%), Gaps = 26/338 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F++ I  FC  G + DA QL   M   G  PNV T + LI GL + GN++   +  ++MV
Sbjct: 249 FSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMV 308

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------C 138
                  G+    +  Y  LI+GL K    ++   +  E  +KG   N ++        C
Sbjct: 309 K-----DGV-NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYC 362

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L +A R+   M+ +G+NP   T   ++ G+C +G++  A  + + M  +GF  +  
Sbjct: 363 KMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPG 422

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ +I+  C N   E A+   REM+L             N+ P        + GLCK G
Sbjct: 423 AFTTIIHWLCMNSRFESALRFLREMLLR------------NMRPNDGLLTTLVGGLCKEG 470

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              + +EL+  L        +   N+LI G CK G  + A  L  K+  +  V D + YN
Sbjct: 471 KHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYN 530

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            LI    KEG++++   L   M + G   D  T+N L+
Sbjct: 531 TLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 568



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 159/349 (45%), Gaps = 42/349 (12%)

Query: 41  RDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNV 100
           R+A  + + +A  G  P V TC  L++ L +   +  +  + + M  G+        P+V
Sbjct: 194 RNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGV-------SPDV 246

Query: 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
           + + + I+  CK   V+    LF +M+  G++ N +        LCK   L EA R  E 
Sbjct: 247 YLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEK 306

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M++ G+N  + TY+ L+NG   + K N A ++      KGF P+   Y+ LI+GYCK  N
Sbjct: 307 MVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGN 366

Query: 213 VEEAMNVSREM--------------ILNGFKKIFN-EMKLC----------NVVPETFTC 247
           + +A+ +  +M              I+ GF KI   E   C          ++ P  FT 
Sbjct: 367 LGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFT- 425

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              I  LC N      +     + + N      +  +L+ G CK G    A EL+ +L  
Sbjct: 426 -TIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLE 484

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K   A++V  N LIH L K G +++   LL  M E G  LD  T+NTL+
Sbjct: 485 KGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLI 533



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 166/374 (44%), Gaps = 49/374 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG---LRRTGNMNLTL 79
           N VT+N+LI G C  GN+ +A +  +KM   G    + T   LI G   L +    N  L
Sbjct: 280 NVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVL 339

Query: 80  K------------LHQEMVNG---MGDFGGIYK-----------PNVFCYGSLIDGLCKD 113
           K            ++  +++G   MG+ G   +           PN     S+I G CK 
Sbjct: 340 KETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKI 399

Query: 114 RLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             ++Q + +  EM  +G + N          LC  ++   A R L  M+ R + P     
Sbjct: 400 GQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLL 459

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L+ G C  GK + A+ L+  +  KGF  ++ + + LI+G CK  N++EA+ + ++M+ 
Sbjct: 460 TTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLE 519

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
            GF            V +  T N  I G CK G V E  +L   +     E     +N L
Sbjct: 520 RGF------------VLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLL 567

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G C+ G  + A  L+N+   ++LV +V  Y ++I    K  +I++   L   +     
Sbjct: 568 IHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNL 627

Query: 346 ALDVDTFNTLMISF 359
            L+   +NTL+ ++
Sbjct: 628 ELNSVVYNTLIRAY 641



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 25/189 (13%)

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           VG+  VA+A  D               +LI+ YC  F      NV     +  F+ + N+
Sbjct: 167 VGESGVAVAAVD---------------LLIHVYCTQFR-----NVGFRNAIGVFRFLANK 206

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                V P   TC   +  L K   + +   +F T+        V +F++ I   CK G 
Sbjct: 207 ----GVFPTVKTCTFLLSSLVKANELEKSYWVFETMR-QGVSPDVYLFSTAINAFCKGGK 261

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A +LF  +    +  +VV YN LIH L K G + +       M ++G    + T++ 
Sbjct: 262 VEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSV 321

Query: 355 LMISFLQKE 363
           L+   ++ E
Sbjct: 322 LINGLMKLE 330


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 180/407 (44%), Gaps = 73/407 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++VT+ +L+ GFC    +  A ++   M   G  P+   C  +I  LR+   +     L 
Sbjct: 290 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLA 349

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +    +GD G +  PNVF Y +LID LCK+   D    LF EM  +G+  N +      
Sbjct: 350 CK----LGDLGMV--PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILI 403

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+  + +A  L + M  +G+   ++ Y  L+NGYC  G ++ A  L   M ++G  
Sbjct: 404 HALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLT 463

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKI 231
           P   SYS LI G C+N ++   M + REM              ++NGF          ++
Sbjct: 464 PTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARL 523

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC- 290
           F++M   NV+P   T N+ I+G C  G++ +  +L+  +     +     + SLI G C 
Sbjct: 524 FDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCL 583

Query: 291 ----------------------------------KFGIFEIASELFNKLSCKNLVADVVA 316
                                             + G F     L+++++ + +  D+V+
Sbjct: 584 TSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVS 643

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + I+++A  K+   +K   L   M+E G   D D F T MI  L KE
Sbjct: 644 FTIIVYAALKQHDKEKSCVLFREMKEQGVKPD-DIFYTCMIDALSKE 689



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 168/371 (45%), Gaps = 50/371 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTFN +I+G+C+ GNIR A QL  +M   G +P+  T  +LI+GL  T  ++   +  
Sbjct: 535 NEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFV 594

Query: 83  QEMVNGM------------------GDFGGIY-----------KPNVFCYGSLIDGLCKD 113
            ++ N                    G F   Y           K ++  +  ++    K 
Sbjct: 595 ADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQ 654

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
              +++  LF EMK++G+  + +        L K+  +++A    + M+  G +P   T+
Sbjct: 655 HDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTH 714

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L+N  C  G +  A  L   M     +P+ F+Y+  ++ +    ++E+A ++   M+ 
Sbjct: 715 TVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML- 773

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
                   +  L ++V    + NI I GLCK G + E ++L   +  S        ++++
Sbjct: 774 --------QGHLASIV----SFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTI 821

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I   CK G    A EL+N++  K L  DVVAYNI I      G+  K   +  +M  +G 
Sbjct: 822 IHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGV 881

Query: 346 ALDVDTFNTLM 356
             + DT+  L+
Sbjct: 882 QPNWDTYRALL 892



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 130/290 (44%), Gaps = 31/290 (10%)

Query: 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
           + Y + I   C+ R +D  + L + M+ +G+ A+ +        LCK  ++ EA  +  +
Sbjct: 222 YVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNV 281

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+  G+     TY  L+ G+C + ++ +A+ +   M R GF+P   + S +I+   K   
Sbjct: 282 MVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKEL 341

Query: 213 VEEAMNVSRE-----MILNGFK------------------KIFNEMKLCNVVPETFTCNI 249
           VEEA +++ +     M+ N F                   ++F EM    + P   T  I
Sbjct: 342 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 401

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            I  LCK G + + + LF  +     ++ V  +NSLI G CK G  + A  L + +  + 
Sbjct: 402 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 461

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L     +Y+ LI  L + G +     L   M E G A +  TF  L+  F
Sbjct: 462 LTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGF 511



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 117/272 (43%), Gaps = 20/272 (7%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLL 150
           N +    ++  L K R     +DLF +M   G++ +  +        C+   L  A  L+
Sbjct: 185 NQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV 244

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             M   G+      Y  L+ G C   +V  A+ + + M   G   D  +Y  L+ G+C+ 
Sbjct: 245 VRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRM 304

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
             +E A+ ++ +MI  GF            VP    C+  ID L K   V E   L   L
Sbjct: 305 EELEMALRITHDMIRLGF------------VPSEANCSFMIDELRKKELVEEAFSLACKL 352

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                   V  +N+LI   CK   F+ A  LF +++ + L  + V Y ILIHAL K G I
Sbjct: 353 GDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMI 412

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +    L   M + G  + V  +N+L+  + ++
Sbjct: 413 EDALCLFDKMRDKGIKVTVYPYNSLINGYCKQ 444



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 16/211 (7%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           ++ AL  +   +   Y P N VT   LI   C  G +  A  L K+M      PN  T +
Sbjct: 692 MIQALNCWDQMVVDGYSP-NTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYN 750

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
             +      G+M     LH  M+ G       +  ++  +  LI GLCK   + +  DL 
Sbjct: 751 CFLDYFATEGDMEKAKDLHSAMLQG-------HLASIVSFNILIKGLCKAGKIQEAIDLM 803

Query: 124 MEMKDKG-----INANTLLCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLV 175
            ++ + G     I+ +T++ +  K+ + N+  EL   M+ +GL P +  Y   +    + 
Sbjct: 804 SKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVH 863

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLING 206
           G+ + A+ ++ +M R G  P+  +Y  L++G
Sbjct: 864 GESDKALGIYTNMIRSGVQPNWDTYRALLSG 894



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 49/250 (19%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L L +  G+    +T + +L     + +  +A  LFD M + G   D + Y+  I  YC
Sbjct: 173 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYC 232

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL-- 266
           ++ N++ A  +   M   G K         + VP     N+ + GLCKN  V E +E+  
Sbjct: 233 ESRNLDGARGLVVRMESEGVK--------ASAVPY----NVLMYGLCKNMRVQEAVEVKN 280

Query: 267 -------------FPTLEISNC-----ELFVEIFNSLIR-------GCCKFGI-----FE 296
                        + TL    C     E+ + I + +IR         C F I      E
Sbjct: 281 VMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKE 340

Query: 297 IASELFNKLSCK----NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           +  E F+ L+CK     +V +V AYN LI  L K  +    + L   M   G   +  T+
Sbjct: 341 LVEEAFS-LACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTY 399

Query: 353 NTLMISFLQK 362
             L+ +  ++
Sbjct: 400 AILIHALCKR 409


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 174/371 (46%), Gaps = 49/371 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V +N+LI G+C  GN+ DA ++   M + G  PN  T +++I G  + G M     + 
Sbjct: 417 NEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECIL 476

Query: 83  QEMVN-----GMGDFGGI------------------------YKPNVFCYGSLIDGLCKD 113
           +EM++       G F  I                         +PN     +L+ GLCK+
Sbjct: 477 EEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKE 536

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
                  +L+  + +KG  AN +        LCK   + EA RLL+ M++RG      TY
Sbjct: 537 GKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITY 596

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L++G C  GKV     L   M ++G  PD F+Y++LI+G C+   ++EA+N       
Sbjct: 597 NTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVN------- 649

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
                ++NE K  ++VP  +T  + IDG CK   + E  +LF  L   N EL   ++N+L
Sbjct: 650 -----LWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTL 704

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           IR  C+ G    A +L + +  K +      Y+ LIH +   G+++    L+  M + G 
Sbjct: 705 IRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGL 764

Query: 346 ALDVDTFNTLM 356
             +V  +  L+
Sbjct: 765 LPNVVCYTALI 775



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 157/339 (46%), Gaps = 65/339 (19%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ +T+N+LI G C EG + +  +L  +M   G  P+  T + LI G+ R G ++  + L
Sbjct: 591 LDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNL 650

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
             E  +          PNV+ YG +IDG CK   +++ + LF E+  + +  N+++    
Sbjct: 651 WNECKSR------DLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTL 704

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+    VEA +L + M  +G+ P   TY+ L++G C +G++  A  L D M ++G 
Sbjct: 705 IRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGL 764

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P+V  Y+ LI GYCK   +++ +NV              EM   ++ P   T  + IDG
Sbjct: 765 LPNVVCYTALIGGYCKLGQMDKVVNV------------LQEMSSYDIHPNKITYTVMIDG 812

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             K+G +                                   + A++L +++  K +V D
Sbjct: 813 YSKSGDM-----------------------------------KTAAKLLHEMVGKGIVPD 837

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
            V YN+L +   KEG+I++   L     E+G   +   F
Sbjct: 838 TVTYNVLTNGFCKEGKIEEGKLL----AEDGVGFNSPLF 872



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 155/338 (45%), Gaps = 26/338 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F++ I  FC  G + DA QL   M   G  PNV T + LI GL + GN++   +  ++MV
Sbjct: 316 FSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMV 375

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------C 138
                  G+    +  Y  LI+GL K    ++   +  E  +KG   N ++        C
Sbjct: 376 K-----DGV-NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYC 429

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L +A R+   M+ +G+NP   T   ++ G+C +G++  A  + + M  +GF  +  
Sbjct: 430 KMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPG 489

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ +I+  C N   E A+   REM+L             N+ P        + GLCK G
Sbjct: 490 AFTTIIHWLCMNSRFESALRFLREMLLR------------NMRPNDGLLTTLVGGLCKEG 537

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              + +EL+  L        +   N+LI G CK G  + A  L  K+  +  V D + YN
Sbjct: 538 KHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYN 597

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            LI    KEG++++   L   M + G   D  T+N L+
Sbjct: 598 TLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 635



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 159/349 (45%), Gaps = 42/349 (12%)

Query: 41  RDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNV 100
           R+A  + + +A  G  P V TC  L++ L +   +  +  + + M  G+        P+V
Sbjct: 261 RNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVS-------PDV 313

Query: 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
           + + + I+  CK   V+    LF +M+  G++ N +        LCK   L EA R  E 
Sbjct: 314 YLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEK 373

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M++ G+N  + TY+ L+NG   + K N A ++      KGF P+   Y+ LI+GYCK  N
Sbjct: 374 MVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGN 433

Query: 213 VEEAMNVSREM--------------ILNGFKKIFN-EMKLC----------NVVPETFTC 247
           + +A+ +  +M              I+ GF KI   E   C          ++ P  FT 
Sbjct: 434 LGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFT- 492

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              I  LC N      +     + + N      +  +L+ G CK G    A EL+ +L  
Sbjct: 493 -TIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLE 551

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K   A++V  N LIH L K G +++   LL  M E G  LD  T+NTL+
Sbjct: 552 KGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLI 600



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 171/394 (43%), Gaps = 60/394 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG---LRRTGNMNLTL 79
           N VT+N+LI G C  GN+ +A +  +KM   G    + T   LI G   L +    N  L
Sbjct: 347 NVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVL 406

Query: 80  K------------LHQEMVNG---MGDFGGIYK-----------PNVFCYGSLIDGLCKD 113
           K            ++  +++G   MG+ G   +           PN     S+I G CK 
Sbjct: 407 KETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKI 466

Query: 114 RLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             ++Q + +  EM  +G + N          LC  ++   A R L  M+ R + P     
Sbjct: 467 GQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLL 526

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L+ G C  GK + A+ L+  +  KGF  ++ + + LI+G CK  N++EA+ + ++M+ 
Sbjct: 527 TTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLE 586

Query: 226 NGFK-----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
            GF                        K+  EM    + P+TFT N+ I G+C+ G + E
Sbjct: 587 RGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDE 646

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            + L+   +  +    V  +  +I G CK    E   +LF +L  +NL  + V YN LI 
Sbjct: 647 AVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIR 706

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A  + G   +   L   M   G      T+++L+
Sbjct: 707 AYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLI 740



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 25/189 (13%)

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           VG+  VA+A  D               +LI+ YC  F      NV     +  F+ + N+
Sbjct: 234 VGESGVAVAAVD---------------LLIHVYCTQFR-----NVGFRNAIGVFRFLANK 273

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                V P   TC   +  L K   + +   +F T+        V +F++ I   CK G 
Sbjct: 274 ----GVFPTVKTCTFLLSSLVKANELEKSYWVFETMR-QGVSPDVYLFSTAINAFCKGGK 328

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A +LF  +    +  +VV YN LIH L K G + +       M ++G    + T++ 
Sbjct: 329 VEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSV 388

Query: 355 LMISFLQKE 363
           L+   ++ E
Sbjct: 389 LINGLMKLE 397


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 169/353 (47%), Gaps = 37/353 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI G C  G I  A  L  +M  FG   N  T   LI GL + G      +++
Sbjct: 197 NVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMY 256

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M        G++ PN++ Y  +++  CKD        LF EM+++G++ N +      
Sbjct: 257 EKMQED-----GVF-PNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLI 310

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ K  EAN++++ M   G+NP + TY  L++G+C VGK+  A++L   +  +G  
Sbjct: 311 GGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLS 370

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           P + +Y++L++G+CK  +   A  V +EM   G K                       ++
Sbjct: 371 PSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQL 430

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            + M+   + P+  T ++ I G C  G + E   LF  +     E    I+N+++ G CK
Sbjct: 431 RSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCK 490

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            G    A  LF ++  K L  +V +Y  +I  L KE + K+   L+  M + G
Sbjct: 491 EGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTG 543



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 128/277 (46%), Gaps = 22/277 (7%)

Query: 91  DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTK 142
           +FG  + PNV  Y +LIDG CK   +++ KDLF EM   G+ AN          L K   
Sbjct: 191 EFG--FSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGI 248

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
             +   + E M + G+ P ++TY  ++N +C  G+   A  LFD M  +G   ++ +Y+ 
Sbjct: 249 KKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNT 308

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI G C            REM  N   K+ ++MK   + P   T N  IDG C  G + +
Sbjct: 309 LIGGLC------------REMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGK 356

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            + L   L+       +  +N L+ G CK G    A ++  ++  + +    + Y ILI 
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILID 416

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              +   ++K   L   MEE G   DV T++ L+  F
Sbjct: 417 TFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGF 453



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 15/193 (7%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  ++N Y     ++ +I+ F+ M  KGF+P    ++ L+      F V  +        
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLT-----FVVGSSS------- 144

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
            N + + FNE K+  V  + ++  I I G C+ G + +  +L   L        V I+ +
Sbjct: 145 FNQWWRFFNESKI-KVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTT 203

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS-MEEN 343
           LI GCCK G  E A +LF ++    LVA+   Y +LIH L K G IKK+ + +   M+E+
Sbjct: 204 LIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG-IKKQGFEMYEKMQED 262

Query: 344 GCALDVDTFNTLM 356
           G   ++ T+N +M
Sbjct: 263 GVFPNLYTYNCVM 275



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 6/109 (5%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI GFC++G + +AS+L K M      PN    +T++ G  + G+    L+L +EM
Sbjct: 445 TYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREM 504

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
                       PNV  Y  +I+ LCK+R   + + L  +M D GI+ +
Sbjct: 505 EEKE------LPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPS 547


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 167/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+ + Y  LI+GLCK+  +D     
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAMLA-----SGV-QPDXYTYSVLINGLCKESKMD----- 229

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                                 +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 230 ----------------------DANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  EM++ G K            P
Sbjct: 268 EIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 316 DKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ NG    V T+N LM
Sbjct: 376 REMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLM 429



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 114/249 (45%), Gaps = 23/249 (9%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   +  A  + + + + GL P + +Y  L+NGY  +G ++    L  +M   G  PD
Sbjct: 152 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFN 233
            ++YSVLING CK   +++A  +  EM++ G                         +I+ 
Sbjct: 212 XYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYK 271

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            M   +++P+  T N  I GLCK G + +  +L   + +   +     + +LI GCCK G
Sbjct: 272 RMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEG 331

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A E   ++  +N+  D VAY  LI  L +EG+      +L  M   G   D  T+ 
Sbjct: 332 DLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYT 391

Query: 354 TLMISFLQK 362
            ++  F +K
Sbjct: 392 MIINEFCKK 400



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 16/193 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C +G +  A ++ K+M +    P++ T +TLI GL + G++     L 
Sbjct: 246 NGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLI 305

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EMV  G+       KP+   Y +LIDG CK+  +D   +    M  + I  + +     
Sbjct: 306 DEMVMKGL-------KPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTAL 358

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGH 418

Query: 194 MPDVFSYSVLING 206
           +P V +Y+VL+NG
Sbjct: 419 VPSVVTYNVLMNG 431



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 102/263 (38%), Gaps = 25/263 (9%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ 155
           ++  +  Y ++I  LC  ++  + K L             ++ +K K   +     ++  
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMFSEAKSLI----------QVVVSRKGKGSASAVFAAILET 64

Query: 156 RGLNPV-IFTYTPLLNGYCLVGKVNVAIALFD-SMARKGFMPDVFSYSVLINGYCKNFNV 213
           +G     I+ ++ L+  Y   G +  AI  +  +   K ++P      VL          
Sbjct: 65  KGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVL---------- 114

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           E  M +    ++ GF   + E+  C      +  NI +   CK+G +     +F  +   
Sbjct: 115 EHLMKLKYFKLVWGF---YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKW 171

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
                V  +N+L+ G  + G  +    L + +    +  D   Y++LI+ L KE ++   
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDA 231

Query: 334 NYLLLSMEENGCALDVDTFNTLM 356
           N L   M   G   +  TF TL+
Sbjct: 232 NELFDEMLVKGLVPNGVTFTTLI 254


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 169/351 (48%), Gaps = 28/351 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+  T   +++ FC +G  RD   L  +M   G  PNV      + GL + G +     +
Sbjct: 214 LDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHV 273

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
            +EMV      G   KPNV+ + SLIDGLCK    ++   LF+++         ++  T+
Sbjct: 274 LEEMV------GKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTV 327

Query: 137 L----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           +    CK+ KL  A  LL  M+++GL P   TYT L++G+C  G  + A  L + M  +G
Sbjct: 328 MIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEG 387

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F+P++++Y+ +I G+CK   +++A  V R     G         LC   P+  T  + I 
Sbjct: 388 FLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQG---------LC---PDKVTYTMLIT 435

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
             CK GH+   ++LF  +  ++C   ++ + ++I   C+    E + +LF+K     LV 
Sbjct: 436 EHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVP 495

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               Y  +I    + G+      +   M ++GC  D  T+  L IS L KE
Sbjct: 496 TKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGAL-ISGLCKE 545



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 148/363 (40%), Gaps = 94/363 (25%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N  T+  +I G+C EG +  A  L+ +M   G  PN  T  TLI G  R G+ +  
Sbjct: 318 YKP-NVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRA 376

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK------------------ 120
                E++N M   G  + PN++ Y ++I G CK   + Q                    
Sbjct: 377 F----ELMNKMKLEG--FLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTY 430

Query: 121 -----------------DLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQ 155
                            DLF +M +   + +         + C++ ++ ++ +L +  + 
Sbjct: 431 TMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLS 490

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
            GL P   TYT ++ GYC VGK   A+ +F+ M + G +PD  +Y  LI+G CK   +EE
Sbjct: 491 IGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEE 550

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI----------------FIDGLCK--N 257
           A            + +F  M   ++VP   TC                  F+DGL K   
Sbjct: 551 A------------RALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIAVSFLDGLDKRQQ 598

Query: 258 GHVLE--VMELFPTLEISNCELFVE------------IFNSLIRGCCKFGIFEIASELFN 303
            H  +  V +L     +    LF++             + S I  C +   + +ASE+  
Sbjct: 599 AHAADALVRKLSAVDNLDAASLFLKNVLDKHYAVDHATYTSFINSCYESNRYALASEISE 658

Query: 304 KLS 306
           K+S
Sbjct: 659 KIS 661



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 13/226 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C++ +  EA+ LL  M + G +    T T ++  +C  G+      LF  M   G  P+V
Sbjct: 192 CQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNV 251

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+  ++G CK   V++A +V  EM+  G K            P  +T    IDGLCK 
Sbjct: 252 VNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLK------------PNVYTHTSLIDGLCKI 299

Query: 258 GHVLEVMELFPTL-EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           G       LF  L + S+ +  V  +  +I G CK G    A  L  ++  + L  +   
Sbjct: 300 GWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNT 359

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           Y  LI    + G   +   L+  M+  G   ++ T+N ++  F +K
Sbjct: 360 YTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKK 405



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 111/254 (43%), Gaps = 26/254 (10%)

Query: 113 DRLVDQTKDLFMEMKDKGI-----NANTLLC----KKTKLVEANRLLELMMQRGLNPVIF 163
           +RL + T D+ +E++  G+      AN +L     ++     A +  + M   G+ P   
Sbjct: 127 NRLREAT-DMLLELRSHGLPLVVETANWVLRVGLRQRHHFAHARQAFDGM---GVRPDAR 182

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           ++  L+ G C  G+   A AL  +M R+GF  D  + +V++  +C            R+ 
Sbjct: 183 SFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFC------------RQG 230

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                  +F  M      P       ++DGLCK G+V +   +   +     +  V    
Sbjct: 231 RFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHT 290

Query: 284 SLIRGCCKFGIFEIASELFNKL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           SLI G CK G  E A  LF KL    +   +V  Y ++I    KEG++ +   LL  M E
Sbjct: 291 SLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVE 350

Query: 343 NGCALDVDTFNTLM 356
            G A + +T+ TL+
Sbjct: 351 QGLAPNTNTYTTLI 364


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 194/414 (46%), Gaps = 60/414 (14%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           + L  L   GSF     +P N V +N+LI  FC EG   +A +LV++M   G  P+V T 
Sbjct: 204 RALELLDGMGSF---GVQP-NKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTF 259

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           ++ I+ L   G +    ++ ++M   + +  G+ +PN+  +  +++G CK+ ++++ K L
Sbjct: 260 NSRISALCSAGKILEASRIFRDMQ--IDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTL 317

Query: 123 FMEMKDKG-------INANTL-LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
              MK  G        N   L L +  KL+EA   L+ M+ +G+ P I+++  +++G C 
Sbjct: 318 VESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCK 377

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG------- 227
            G ++ A  +   M   G  PD  +YS L++G C    V +A N+  EM+  G       
Sbjct: 378 NGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYT 437

Query: 228 --------FK--KIFNEMKLCNVVPE------TFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                   +K  +IF   KL   + E        TCNI IDGLCK+G + E +E+   + 
Sbjct: 438 CNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMW 497

Query: 272 ISNCELFVEIFNS-----------------------LIRGCCKFGIFEIASELFNKLSCK 308
           I        + NS                       +I G CK G  + A + F ++  K
Sbjct: 498 IHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGK 557

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +L  D + Y+  IH+  K G+I     +L  ME+ GC   + T+N+L++    K
Sbjct: 558 SLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSK 611



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 167/343 (48%), Gaps = 30/343 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T N LI G C  G   DA ++  KM   GCRPN  +   L+ G  R G   L+++   E+
Sbjct: 153 TLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAG---LSMRA-LEL 208

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
           ++GMG FG   +PN   Y +LI   C++   ++ + L   M++ G+  +        + L
Sbjct: 209 LDGMGSFG--VQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISAL 266

Query: 138 CKKTKLVEANRLLELMM---QRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           C   K++EA+R+   M    + GL  P I T+  +L G+C  G +  A  L +SM R G 
Sbjct: 267 CSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGN 326

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           + ++ SY++ + G  +N  + EA    +EM+  G            + P  ++ N  +DG
Sbjct: 327 LMELESYNIWLLGLVRNGKLLEAQLALKEMVDKG------------IEPNIYSFNTVMDG 374

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCKNG + +   +   +  S        +++L+ GCC  G    A+ + +++  +    +
Sbjct: 375 LCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPN 434

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               NIL+H+L KEG+I +   LL  M E    LD  T N ++
Sbjct: 435 TYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVI 477



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 180/407 (44%), Gaps = 87/407 (21%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N  TFN +++GFC EG + +A  LV+ M   G    + + +  + GL R G +    
Sbjct: 292 RP-NITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQ 350

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-- 137
              +EMV+      GI +PN++ + +++DGLCK+ L+   + +   M   GI  +T+   
Sbjct: 351 LALKEMVDK-----GI-EPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYS 404

Query: 138 ------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLL---------------------- 169
                 C   K+++AN +L  MM+RG +P  +T   LL                      
Sbjct: 405 TLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNER 464

Query: 170 -------------NGYCLVGKVNVAIALFDSMARKGF----------------------- 193
                        +G C  GK++ A+ + + M   G                        
Sbjct: 465 SYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKC 524

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PD+ +YS++ING CK   ++EA            +K F EM   ++ P++   + FI  
Sbjct: 525 LPDLITYSIIINGLCKAGRLDEA------------RKKFIEMVGKSLHPDSIIYDTFIHS 572

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC-CKFGIFEIASELFNKLSCKNLVA 312
            CK+G +     +   +E   C   ++ +NSLI G   K  IFEI   L + +  K +  
Sbjct: 573 FCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYG-LLDDMKEKGITP 631

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ++  YN +I  L + G+IK    LL  M + G + ++ +F  L+ +F
Sbjct: 632 NICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAF 678



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 170/403 (42%), Gaps = 80/403 (19%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T KVL A       +RR   P N  T N L+     EG I +A +L++KM       +  
Sbjct: 413 TGKVLKANNILHEMMRRGCSP-NTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNV 471

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYK----------------PNVFCY 103
           TC+ +I GL ++G ++  +++ + M ++G    G +                  P++  Y
Sbjct: 472 TCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITY 531

Query: 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQ 155
             +I+GLCK   +D+ +  F+EM  K ++ ++++        CK  K+  A R+L+ M +
Sbjct: 532 SIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEK 591

Query: 156 RGLN-----------------------------------PVIFTYTPLLNGYCLVGKVNV 180
           RG N                                   P I TY  +++  C  G++  
Sbjct: 592 RGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKD 651

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCK--NFNVEEAMNVSREMILNGFKKIFN-EMKL 237
           A +L D M +KG  P++ S+ +LI  +CK  +F V               K++F   + +
Sbjct: 652 ATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGV--------------VKEVFEIALSI 697

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
           C      ++  +  + L   G V E  ELF        +L    +N LI   CK  + E 
Sbjct: 698 CGHKEALYS--LMFNELLIGGEVSEAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLEN 755

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
           AS++ +K+  K    D  ++  +I  LGK G+    + L   M
Sbjct: 756 ASDILHKMIDKGYRFDPASFMPVIDGLGKRGKKHDADELAERM 798



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 3/148 (2%)

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           Y  N  +E ++   RE  ++ F  ++ +M +  V PET+T N+ I GLC +G   +  E+
Sbjct: 117 YLYNMVLESSL---REDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREV 173

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
           F  + +  C      F  L+RG C+ G+   A EL + +    +  + V YN LI +  +
Sbjct: 174 FDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCR 233

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNT 354
           EG+ ++   L+  M E+G   DV TFN+
Sbjct: 234 EGRNEEAERLVERMREDGLFPDVVTFNS 261



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 16/204 (7%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P ++ Y  +L       KV+    L+  M   G  P+ ++ ++LI G C +   E+A   
Sbjct: 114 PPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDA--- 170

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                    +++F++M +    P  F+  I + G C+ G  +  +EL   +     +   
Sbjct: 171 ---------REVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNK 221

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            I+N+LI   C+ G  E A  L  ++    L  DVV +N  I AL   G+I + + +   
Sbjct: 222 VIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRD 281

Query: 340 M---EENGCAL-DVDTFNTLMISF 359
           M   EE G    ++ TFN ++  F
Sbjct: 282 MQIDEELGLPRPNITTFNLMLEGF 305



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 49/260 (18%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   + +   P + + +++ I  FC  G I  A +++K M   GC  ++ T ++LI
Sbjct: 547 ARKKFIEMVGKSLHP-DSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLI 605

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   G+ N   +++  +++ M + G    PN+  Y ++I  LC+   +     L  EM
Sbjct: 606 LGL---GSKNQIFEIYG-LLDDMKEKG--ITPNICTYNNMISCLCEGGRIKDATSLLDEM 659

Query: 127 KDKGINAN--------TLLCKKT----------------------------------KLV 144
             KGI+ N           CK +                                  ++ 
Sbjct: 660 LQKGISPNISSFRLLIKAFCKASDFGVVKEVFEIALSICGHKEALYSLMFNELLIGGEVS 719

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           EA  L +  + R  +   F Y  L+   C    +  A  +   M  KG+  D  S+  +I
Sbjct: 720 EAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLENASDILHKMIDKGYRFDPASFMPVI 779

Query: 205 NGYCKNFNVEEAMNVSREMI 224
           +G  K     +A  ++  M+
Sbjct: 780 DGLGKRGKKHDADELAERMM 799


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 164/342 (47%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI GF  EGN  +A +++K+M   G +PN  T D L+ GL + G M+    L 
Sbjct: 326 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 385

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MV         ++P+   Y  +I+G  +         L  EM++ GI+ N        
Sbjct: 386 KQMVRDS------HRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMI 439

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +  +A+ LLE M  +GL P  F Y PL++GYC  G V++A  +FD M +   +
Sbjct: 440 HGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVL 499

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD++ Y+ LI G  K   VEE+             K F +M+   ++P  FT +  I G 
Sbjct: 500 PDLYCYNSLIFGLSKVGRVEES------------TKYFAQMQERGLLPNEFTYSGLIHGY 547

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            KNG +    +L   +  +  +    I+  L+    K    E  S  F  +  + ++ D 
Sbjct: 548 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 607

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             Y ILIH L   G ++    +L  +E+NG   DV  +++L+
Sbjct: 608 RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLI 649



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 169/341 (49%), Gaps = 26/341 (7%)

Query: 29  SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
           S ++ +C       A +++ +M   GC  N  T + LI GL R+G +       ++M   
Sbjct: 227 SALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME-- 284

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKK 140
             D+G +  P+ F YG+LI+GLCK R  ++ K L  EM    +  N ++         ++
Sbjct: 285 --DYGLV--PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMRE 340

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
               EA ++++ M+  G+ P   TY  L+ G C +G+++ A  L   M R    PD  +Y
Sbjct: 341 GNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITY 400

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           +++I G+ ++ + ++A             ++ +EM+   + P  +T +I I GLC++G  
Sbjct: 401 NLIIEGHFRHHSKKDAF------------RLLSEMENAGISPNVYTYSIMIHGLCQSGEP 448

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            +  +L   +     +    ++  LI G C+ G   +A E+F+K++  N++ D+  YN L
Sbjct: 449 EKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSL 508

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           I  L K G++++       M+E G   +  T++ L+  +L+
Sbjct: 509 IFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 549



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 156/350 (44%), Gaps = 26/350 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN VT+N LI G C  G + +A    K M  +G  P+  T   LI GL ++   N    L
Sbjct: 255 LNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKAL 314

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EM           KPNV  Y +LIDG  ++   D+   +  EM   G+  N +     
Sbjct: 315 LDEMSCAE------LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNL 368

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++  A+ LL+ M++    P   TY  ++ G+        A  L   M   G 
Sbjct: 369 VRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGI 428

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V++YS++I+G C++   E+A ++  EM   G K            P  F     I G
Sbjct: 429 SPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK------------PNAFVYAPLISG 476

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C+ G+V    E+F  +   N    +  +NSLI G  K G  E +++ F ++  + L+ +
Sbjct: 477 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 536

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              Y+ LIH   K G ++    L+  M + G   +   +  L+ S+ + +
Sbjct: 537 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSD 586



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 151/343 (44%), Gaps = 30/343 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T++ +I G C  G    AS L+++M T G +PN      LI+G  R GN++L  ++ 
Sbjct: 431 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF 490

Query: 83  QEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            +M  VN +        P+++CY SLI GL K   V+++   F +M+++G+  N      
Sbjct: 491 DKMTKVNVL--------PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSG 542

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K   L  A +L++ M+  GL P    Y  LL  Y     +    + F SM  +G
Sbjct: 543 LIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQG 602

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
            M D   Y +LI+    + N+E A  V     L+G +K          VP+    +  I 
Sbjct: 603 VMLDNRIYGILIHNLSSSGNMEAAFRV-----LSGIEK-------NGSVPDVHVYSSLIS 650

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK     +   +   +     +  +  +N+LI G CK G    A  +FN +  K LV 
Sbjct: 651 GLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVP 710

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + V Y  LI    K G I    YL   M   G   D   ++ L
Sbjct: 711 NCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 753



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 174/417 (41%), Gaps = 90/417 (21%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-VTTCD------ 63
           F     R   P N+ T++ LI G+   G++  A QLV++M   G +PN V   D      
Sbjct: 525 FAQMQERGLLP-NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF 583

Query: 64  ----------------------------TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI 95
                                        LI  L  +GNM    ++    ++G+   G +
Sbjct: 584 KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV----LSGIEKNGSV 639

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
             P+V  Y SLI GLCK    ++   +  EM  KG++ N +        LCK   +  A 
Sbjct: 640 --PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 697

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +   ++ +GL P   TYT L++G C VG ++ A  L++ M   G  PD F YSVL  G 
Sbjct: 698 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 757

Query: 208 CKNFNVEEAMNVSREMILNGFKKI--FNE--------------MKLCNV------VPETF 245
               ++E+AM +  EM L G   I  FN               +KL +V      VP   
Sbjct: 758 SSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNAL 817

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCE--------LFVEIFNS----------LIR 287
           T    I GL + G + EV  +F  L+    E        LF+++ N           +IR
Sbjct: 818 TIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIR 877

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             CK G  + A  L + +  K+      +Y  ++  L ++G++ +   LL  M++ G
Sbjct: 878 DHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 934


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 169/340 (49%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N LI G+C  G + DA   +++    G  P+  T +T + GL +  ++   LK+   
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDV 311

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           MV    D      P+VF Y  +++ LCK+  +++ K +  +M D+G        NTL   
Sbjct: 312 MVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAA 365

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +L EA  L   +  +G++P ++T+  L+N  C VG  ++A+ LF+ M   G  PD
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+  C    + +A+++ ++M   G  +             T T N  IDGLCK
Sbjct: 426 EVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR------------STITYNTIIDGLCK 473

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E  E+F  +++         FN+LI G CK    + A  L N++  + L  + + 
Sbjct: 474 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNIT 533

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN ++    K+G IKK   +L +M  NG  +DV T+ TL+
Sbjct: 534 YNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 179/369 (48%), Gaps = 37/369 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN+L+K  C    +R A  ++++M++ G  P+ TT  TL+ G    G++   L++   
Sbjct: 182 VTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKAR 241

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKD----KGINANTL--- 136
           M+  MG        NV     LI+G CK  R+ D    +  E+ D      I  NT    
Sbjct: 242 MLE-MGCSATKVTVNV-----LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNG 295

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+   +  A +++++M+Q G +P +FTY  ++N  C  G++  A  + + M  +G +PD
Sbjct: 296 LCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 355

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
           + +++ LI   C    +EEA++++R++ + G                         ++F 
Sbjct: 356 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 415

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EMK     P+  T N  ID LC  G + + ++L   +E + C      +N++I G CK  
Sbjct: 416 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKM 475

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A E+F+++  + +  + + +N LI  L K+ +I     L+  M   G   +  T+N
Sbjct: 476 RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYN 535

Query: 354 TLMISFLQK 362
           +++  + ++
Sbjct: 536 SILTHYCKQ 544



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 27/345 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            TFN+LI   C    + +A  L +++   G  P+V T + LI  L + G+ +L L+L +E
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M N          P+   Y +LID LC    + +  DL  +M+  G     I  NT+   
Sbjct: 417 MKNSG------CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDG 470

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCKK ++ EA  + + M  +G++    T+  L++G C   K++ A  L + M  +G  P+
Sbjct: 471 LCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPN 530

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ ++  YCK  ++++A ++   M  NGF+         +VV    T    I+GLCK
Sbjct: 531 NITYNSILTHYCKQGDIKKAADILETMTANGFE--------VDVV----TYGTLINGLCK 578

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G     +++   + I       + +N +++   +      A  LF +++      D + 
Sbjct: 579 AGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALT 638

Query: 317 YNILIHALGKEGQIKKENY-LLLSMEENGCALDVDTFNTLMISFL 360
           Y I+   L + G   KE +  +L M + G   +  +F  L    L
Sbjct: 639 YKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLL 683



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 17/227 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + +T+N++I G C +  I +A ++  +M   G   N  T +TLI GL +   ++    
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFG 517

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           L  +M++ G+       +PN   Y S++   CK   + +  D+   M   G   + +   
Sbjct: 518 LINQMISEGL-------QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYG 570

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +   A ++L  M  +G+ P    Y P+L        +  A++LF  MA  
Sbjct: 571 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 630

Query: 192 GFMPDVFSYSVLINGYCKNFN-VEEAMNVSREMILNGFKKIFNEMKL 237
           G  PD  +Y ++  G C+    ++EA +   EM+  GF   F+  ++
Sbjct: 631 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRM 677



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 23/226 (10%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G+      Y  LLN      K+ +  +++  M  +G  PDV +++ L+   C+   V  A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 217 MNVSREM--------------ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDG 253
           + +  EM              ++ GF          ++   M          T N+ I+G
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK G V + +           E     +N+ + G C+      A ++ + +  +    D
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V  YNI+++ L K GQ+++   +L  M + GC  D+ TFNTL+ + 
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL 366



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 40/202 (19%)

Query: 10  AFG---SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AFG     I    +P N++T+NS++  +C +G+I+ A+ +++ M   G   +V T  TLI
Sbjct: 515 AFGLINQMISEGLQP-NNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573

Query: 67  TGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            GL + G   + LK+ + M + GM       +P    Y  ++  L +   +     LF E
Sbjct: 574 NGLCKAGRTQVALKVLRGMRIKGM-------RPTPKAYNPVLQSLFRRNNIRDALSLFRE 626

Query: 126 MKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL-VGKVNVAIAL 184
           M + G   + L                           TY  +  G C   G +  A   
Sbjct: 627 MAEVGEPPDAL---------------------------TYKIVFRGLCRGGGPIKEAFDF 659

Query: 185 FDSMARKGFMPDVFSYSVLING 206
              M  KGF+P+  S+ +L  G
Sbjct: 660 MLEMVDKGFIPEFSSFRMLAEG 681



 Score = 41.6 bits (96), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 40/223 (17%), Positives = 92/223 (41%), Gaps = 11/223 (4%)

Query: 135 TLLCKKTKLVEANRLLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           T L ++     A R+L   + R    P    Y  ++     VG +++   L   M R+G 
Sbjct: 46  TALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGH 105

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
              +     +++ +  ++  ++  + + ++ILN  + +F       +  +T   N  ++ 
Sbjct: 106 QVKLG----VVHSFLDSYEGQQLFDDAVDLILNQLQPLFG------IQADTVVYNHLLNV 155

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           L +   +  +  ++  +     +  V  FN+L++  C+      A  +  ++S + +  D
Sbjct: 156 LVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPD 215

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +  L+    +EG I+    +   M E GC+    T N L+
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLI 258


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 184/378 (48%), Gaps = 42/378 (11%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           S ++R  +  N  T+N L+K  C    +  A +L+ +M+  GC P+V +  T+I+ + + 
Sbjct: 173 SNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKL 232

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
           G +    +L              ++PNV  Y +LI+G C++  V +   L  +M +KGI+
Sbjct: 233 GKVEEARELSIR-----------FQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGID 281

Query: 133 AN-----TLLCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            N     T++   + +      L +   M  RG +P ++T+T L+ GY + G+V  A+ +
Sbjct: 282 PNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNI 341

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK 230
           ++ MA +GF P+V +Y+ LI+G C +  + EA++VS +M              +++GF K
Sbjct: 342 WNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAK 401

Query: 231 ---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
                    I+N+M     +P        ++ LC++    +   L   +   NC      
Sbjct: 402 AGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVT 461

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           FN+ I+G C  G  E A  LF ++       ++  YN ++  L KE +IK+   L+  ME
Sbjct: 462 FNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEME 521

Query: 342 ENGCALDVDTFNTLMISF 359
           E G  L++ T+NT+   F
Sbjct: 522 EKGMELNLVTYNTIFGGF 539



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 158/368 (42%), Gaps = 56/368 (15%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F ++I  +   G    A ++  ++  FGC+P V   + L+  +       +   ++  M 
Sbjct: 117 FINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMK 176

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---------- 136
               +      PNV+ Y  L+  LCK+  VD    L +EM +KG   + +          
Sbjct: 177 RDGKE------PNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMS 230

Query: 137 ----------------------------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
                                        C++ K+ E   LL  M+++G++P + TY+ +
Sbjct: 231 KLGKVEEARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTV 290

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           ++    +G V +A+A++  M  +G  P+V++++ L+ GY     V EA+N+   M   GF
Sbjct: 291 ISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGF 350

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           +            P     N  I GLC +G + E + +   +E + C   V  + +LI G
Sbjct: 351 E------------PNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDG 398

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K G    ASE++NK+     + +VV Y  +++ L +     +   L+  M  + C  +
Sbjct: 399 FAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPN 458

Query: 349 VDTFNTLM 356
             TFNT +
Sbjct: 459 TVTFNTFI 466



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 157/353 (44%), Gaps = 31/353 (8%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           F+R C    N  TF SL+KG+ M G + +A  +  +MA  G  PNV   +TLI GL   G
Sbjct: 311 FVRGCSP--NVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHG 368

Query: 74  NMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
            M   + +  +M  NG         PNV  YG+LIDG  K   +    +++ +M   G  
Sbjct: 369 KMGEAVSVSSKMERNGC-------SPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCI 421

Query: 133 ANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            N +        LC+ +   +A  L+E M      P   T+   + G C  G+V  AI L
Sbjct: 422 PNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINL 481

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
           F  M + G  P++ +Y+ +++G  K   ++EA+ +  EM   G      E+ L       
Sbjct: 482 FCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGM-----ELNL------- 529

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T N    G C  G   E ++L   + +   +     +N+L    C  G  + A +L +K
Sbjct: 530 VTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDK 589

Query: 305 LSCK-NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           LS     V +V AY  L+  +  +  +++    L  M   G  L+  T+N L+
Sbjct: 590 LSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALV 642



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 115/251 (45%), Gaps = 38/251 (15%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           +G  ++  S + R     N  T+ +LI GF   G++  AS++  KM T GC PNV    +
Sbjct: 370 MGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTS 429

Query: 65  LITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGIY------------- 96
           ++  L R+   +    L ++M               + G+   G +              
Sbjct: 430 MVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYG 489

Query: 97  -KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
             PN+  Y  ++DGL K+  + +  +L  EM++KG+  N +         C   K  EA 
Sbjct: 490 CSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEAL 549

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-FMPDVFSYSVLING 206
           +LL  M+  G+ P   TY  L   YC+ GKV  AI L D ++  G ++P+V +Y+ L+ G
Sbjct: 550 KLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWG 609

Query: 207 YCKNFNVEEAM 217
            C    VEEA+
Sbjct: 610 ICNQIGVEEAV 620



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 134/320 (41%), Gaps = 61/320 (19%)

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------CKKTKLVE-ANRLLELMM 154
           Y  +I+ L ++  VD  + L  +MK +GI+ +  L        ++  L E A ++   + 
Sbjct: 82  YQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIR 141

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           + G  P +  Y  LL+      +  +   ++ +M R G  P+V++Y++L+   CKN  V+
Sbjct: 142 EFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVD 201

Query: 215 EAMNVSREM--------------------------------------------ILNGF-- 228
            A  +  EM                                            ++NGF  
Sbjct: 202 GACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVSVYNALINGFCR 261

Query: 229 ----KKIF---NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
               K++F    +M    + P   T +  I  L   G+V   + ++  + +  C   V  
Sbjct: 262 EYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYT 321

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           F SL++G    G    A  ++N+++ +    +VVAYN LIH L   G++ +   +   ME
Sbjct: 322 FTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKME 381

Query: 342 ENGCALDVDTFNTLMISFLQ 361
            NGC+ +V T+  L+  F +
Sbjct: 382 RNGCSPNVSTYGALIDGFAK 401



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 17/196 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTFN+ IKG C  G +  A  L  +M  +GC PN+ T + ++ GL +   +   L+
Sbjct: 456 PPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALE 515

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-----KDKGINAN 134
           L  EM   GM       + N+  Y ++  G C     ++   L  +M     K   I  N
Sbjct: 516 LVTEMEEKGM-------ELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYN 568

Query: 135 TL---LCKKTKLVEANRLLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           TL    C + K+  A +LL+ +   G   P +  YT LL G C    V  A+   D M  
Sbjct: 569 TLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLN 628

Query: 191 KGFMPDVFSYSVLING 206
           +G   +  +++ L+ G
Sbjct: 629 EGICLNAATWNALVRG 644



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 15/181 (8%)

Query: 180 VAIALFDSMA-RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           +A   F S+A  K F     +Y ++I              + RE  ++G + +  +MKL 
Sbjct: 61  LASNYFRSIANSKAFQHTQLTYQIMIE------------KLGRECDVDGVQYLLQQMKLE 108

Query: 239 NVV-PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
            +   E    N+ I+   + G   + +++F  +    C+  V+I+N L+        F++
Sbjct: 109 GISCSEDLFINV-INTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQM 167

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
              +++ +       +V  YNIL+ AL K  ++     LL+ M   GC  DV ++ T++ 
Sbjct: 168 IEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVIS 227

Query: 358 S 358
           S
Sbjct: 228 S 228


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 170/378 (44%), Gaps = 38/378 (10%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           +R   P N+VT+N+LI GF  EG +  ASQL+ +M +FG  PN  T + LI G    GN 
Sbjct: 291 KRMIHP-NEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 349

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
              LK+   M+   G       P+   YG L+DGLCK+   D  +  +M MK  G+    
Sbjct: 350 KEALKMFY-MMEAKG-----LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGR 403

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +        LCK   L EA  LL  M + G++P I TY+ L+NG+C VG+   A  +   
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCR 463

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM--KLCN--- 239
           + R G  P+   YS LI   C+   ++EA+ +   MIL G  +    FN +   LC    
Sbjct: 464 IYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK 523

Query: 240 ---------------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                          ++P T + +  I+G   +G  L+   +F  +           + S
Sbjct: 524 VAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGS 583

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           L++G CK G    A +    L       D V YN L+ A+ K G + K   L   M +  
Sbjct: 584 LLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRS 643

Query: 345 CALDVDTFNTLMISFLQK 362
              D  T+ +L+    +K
Sbjct: 644 ILPDSYTYTSLISGLCRK 661



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 156/343 (45%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            TFN LI   C EG+   +S L++KM   G  P + T +T++    + G     ++L   
Sbjct: 194 ATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 253

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M +   D       +V  Y  LI  LC+   + +   L  +M+ + I+ N +        
Sbjct: 254 MKSKGVD------ADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLING 307

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
              + K++ A++LL  M+  GL+P   T+  L++G+   G    A+ +F  M  KG  P 
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS 367

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY VL++G CKN   + A          GF   +  MK   V     T    IDGLCK
Sbjct: 368 EVSYGVLLDGLCKNAEFDLA---------RGF---YMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG + E + L   +     +  +  +++LI G CK G F+ A E+  ++    L  + + 
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGII 475

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y+ LI+   + G +K+   +  +M   G   D  TFN L+ S 
Sbjct: 476 YSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSL 518



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 157/371 (42%), Gaps = 38/371 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+  +I G C  G + +A  L+ +M+  G  P++ T   LI G  + G      K  +E
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGR----FKTAKE 459

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TL 136
           +V  +   G    PN   Y +LI   C+   + +   ++  M  +G   +        T 
Sbjct: 460 IVCRIYRVG--LSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTS 517

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+ EA   +  M   G+ P   ++  L+NGY   G+   A ++FD M + G  P 
Sbjct: 518 LCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPT 577

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFN 233
            F+Y  L+ G CK  ++ EA    + +              +L    K         +F 
Sbjct: 578 FFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFG 637

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKF 292
           EM   +++P+++T    I GLC+ G  +  +      E     L  ++ +   + G  K 
Sbjct: 638 EMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKA 697

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G ++       ++       D+V  N +I    + G+I+K N LL  M       ++ T+
Sbjct: 698 GQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTY 757

Query: 353 NTLMISFLQKE 363
           N L+  + +++
Sbjct: 758 NILLHGYSKRK 768



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 154/382 (40%), Gaps = 65/382 (17%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN L+   C  G + +A + ++ M + G  PN  + D LI G   +G       +  EM
Sbjct: 510 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 569

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLL--- 137
              +G     + P  F YGSL+ GLCK   + + +     +         +  NTLL   
Sbjct: 570 TK-VG-----HHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAM 623

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF--DSMARKGFMP 195
           CK   L +A  L   M+QR + P  +TYT L++G C  GK  +AI LF  ++ AR   +P
Sbjct: 624 CKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAI-LFAKEAEARGNVLP 682

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           +   Y+  ++G  K    +  +    +M   G              P+  T N  IDG  
Sbjct: 683 NKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGH------------TPDIVTTNAMIDGYS 730

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFN-------------------------------- 283
           + G + +  +L P +   N    +  +N                                
Sbjct: 731 RMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKL 790

Query: 284 ---SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
              SL+ G C+  + EI  ++     C+ +  D   +N+LI      G+I     L+  M
Sbjct: 791 TCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVM 850

Query: 341 EENGCALDVDTFNTLMISFLQK 362
              G +LD DT +  M+S L +
Sbjct: 851 TSLGISLDKDTCDA-MVSVLNR 871



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 154/355 (43%), Gaps = 36/355 (10%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           L A   F    +  + P    T+ SL+KG C  G++R+A + +K +       +    +T
Sbjct: 560 LKAFSVFDEMTKVGHHP-TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNT 618

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           L+T + ++GN+   + L  EMV           P+ + Y SLI GLC+     +T    +
Sbjct: 619 LLTAMCKSGNLAKAVSLFGEMVQRS------ILPDSYTYTSLISGLCRK---GKTVIAIL 669

Query: 125 EMKDKGINANTL------------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
             K+     N L            + K  +        E M   G  P I T   +++GY
Sbjct: 670 FAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGY 729

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
             +GK+     L   M  +   P++ +Y++L++GY K  +V  +  + R +ILNG     
Sbjct: 730 SRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNG----- 784

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEV-MELFPTLEISNCELFVEIFNSLIRGCCK 291
                  ++P+  TC+  + G+C++ ++LE+ +++         E+    FN LI  CC 
Sbjct: 785 -------ILPDKLTCHSLVLGICES-NMLEIGLKILKAFICRGVEVDRYTFNMLISKCCA 836

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G    A +L   ++   +  D    + ++  L +  + ++   +L  M + G +
Sbjct: 837 NGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGIS 891



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 142/313 (45%), Gaps = 32/313 (10%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N  T+N L+ G+    ++  +  L + +   G  P+  TC +L+ G+  +  + + LK+ 
Sbjct: 753  NLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKIL 812

Query: 83   QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------- 134
            +  +  G+       + + + +  LI   C +  ++   DL   M   GI+ +       
Sbjct: 813  KAFICRGV-------EVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAM 865

Query: 135  -TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             ++L +  +  E+  +L  M ++G++P    Y  L+NG C VG +  A  + + M     
Sbjct: 866  VSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKI 925

Query: 194  MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             P   + S ++    K    +EA  + R M+         +MKL   VP   +    +  
Sbjct: 926  CPPNVAESAMVRALAKCGKADEATLLLRFML---------KMKL---VPTIASFTTLMHL 973

Query: 254  LCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             CKNG+V+E +EL   + +SNC L +++  +N LI G C  G   +A EL+ ++     +
Sbjct: 974  CCKNGNVIEALEL--RVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFL 1031

Query: 312  ADVVAYNILIHAL 324
            A+   Y  LI  L
Sbjct: 1032 ANATTYKALIRGL 1044



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 151/393 (38%), Gaps = 79/393 (20%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N V +   + G    G  +      ++M   G  P++ T + +I G  R G +  T  L 
Sbjct: 683  NKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLL 742

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             EM N  G       PN+  Y  L+ G  K + V  +  L+  +   GI  + L C    
Sbjct: 743  PEMGNQNGG------PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLV 796

Query: 143  L--VEAN------RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL---------- 184
            L   E+N      ++L+  + RG+    +T+  L++  C  G++N A  L          
Sbjct: 797  LGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGIS 856

Query: 185  -------------------------FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
                                        M+++G  P+   Y  LING C+  +++ A  V
Sbjct: 857  LDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVV 916

Query: 220  SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV---------MELFPTL 270
              EMI +         K+C   P     +  +  L K G   E          M+L PT 
Sbjct: 917  KEEMIAH---------KIC---PPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPT- 963

Query: 271  EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                    +  F +L+  CCK G    A EL   +S   L  D+V+YN+LI  L  +G +
Sbjct: 964  --------IASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDM 1015

Query: 331  KKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
                 L   M+ +G   +  T+  L+   L +E
Sbjct: 1016 ALAFELYEEMKGDGFLANATTYKALIRGLLARE 1048



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 14/201 (6%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           NP +  Y  L+  Y   G +  ++ +F  M   GF P V++ + ++    K+       +
Sbjct: 122 NPSV--YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWS 179

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
             +EM+         + K+C   P+  T NI I+ LC  G   +   L   +E S     
Sbjct: 180 FLKEML---------KRKIC---PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPT 227

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+++   CK G F+ A EL + +  K + ADV  YN+LIH L +  +I K   LL 
Sbjct: 228 IVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLR 287

Query: 339 SMEENGCALDVDTFNTLMISF 359
            M +     +  T+NTL+  F
Sbjct: 288 DMRKRMIHPNEVTYNTLINGF 308



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 95/242 (39%), Gaps = 46/242 (19%)

Query: 3    KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            K+L A +  G  + R        TFN LI   C  G I  A  LVK M + G   +  TC
Sbjct: 810  KILKAFICRGVEVDR-------YTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTC 862

Query: 63   DTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGIY----------- 96
            D +++ L R      +  +  EM               +NG+   G I            
Sbjct: 863  DAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIA 922

Query: 97   ----KPNVFCYGSLIDGLCKDRLVDQTKDLF-----MEMKDKGINANTLL---CKKTKLV 144
                 PNV    +++  L K    D+   L      M++     +  TL+   CK   ++
Sbjct: 923  HKICPPNV-AESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVI 981

Query: 145  EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
            EA  L  +M   GL   + +Y  L+ G C  G + +A  L++ M   GF+ +  +Y  LI
Sbjct: 982  EALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALI 1041

Query: 205  NG 206
             G
Sbjct: 1042 RG 1043



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 10/139 (7%)

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
           F  +    +LCN  P  +  +I I    + G + + +E+F  + +      V   N+++ 
Sbjct: 109 FGALMTTYRLCNSNPSVY--DILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILG 166

Query: 288 GCCKFG----IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
              K G    ++    E+  +  C     DV  +NILI+ L  EG  +K +YL+  ME++
Sbjct: 167 SVVKSGEDVSVWSFLKEMLKRKIC----PDVATFNILINVLCAEGSFEKSSYLMQKMEKS 222

Query: 344 GCALDVDTFNTLMISFLQK 362
           G A  + T+NT++  + +K
Sbjct: 223 GYAPTIVTYNTVLHWYCKK 241


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 176/344 (51%), Gaps = 26/344 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N  TFN L+   C EG ++DA  +  ++   G +P   + +TLI G  ++GN+    +
Sbjct: 229 PPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFR 288

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----T 135
           L  +MV  M +F     P+VF Y +LIDGLCK+  ++    LF EM D+G+  N     T
Sbjct: 289 L--KMV--MEEFRVF--PDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTT 342

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+   CK  ++  A  + + M  +GL   +  Y  L++G C  G    A      M ++G
Sbjct: 343 LINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRG 402

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
            +PD F+Y+ L++G CK  ++E A+ + +EM+  G       ++L NV    FT    I 
Sbjct: 403 LIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEG-------IQLDNVA---FTA--IIS 450

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLC++G +++       +  +  +     +  ++ G CK G  ++  +L  ++     + 
Sbjct: 451 GLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIP 510

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            V+ YN+L++ L K+GQ+K  + LL +M   G   D  T+N L+
Sbjct: 511 GVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILL 554



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 170/363 (46%), Gaps = 43/363 (11%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A + F    +   +P   V+FN+LI G+C  GN+ +  +L   M  F   P+V T 
Sbjct: 247 KVKDAQLIFDEIRKTGLQP-TAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTY 305

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI GL +   +     L +EM     D G +  PN   + +LI+G CK+  VD   ++
Sbjct: 306 SALIDGLCKECQLEDANHLFKEMC----DRGLV--PNDVTFTTLINGQCKNGRVDLALEI 359

Query: 123 FMEMKDKGINA-----NTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           + +M  KG+ A     NTL   LCK     EA + +  M +RGL P  FTYT LL+G C 
Sbjct: 360 YQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCK 419

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----- 229
            G + +A+ +   M ++G   D  +++ +I+G C++  + +A    REM+  G K     
Sbjct: 420 EGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGT 479

Query: 230 ------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV-MELFPTL 270
                             K+  EM+    +P   T N+ ++GLCK G V    M L   L
Sbjct: 480 YTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAML 539

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
            +      +  +N L++G CK G      +  N  +   LV+D  +Y  L+H L K  + 
Sbjct: 540 NLGVVPDDI-TYNILLQGHCKHGKL---GDFQNVKTEMGLVSDYASYRSLLHELSKASKD 595

Query: 331 KKE 333
           +++
Sbjct: 596 RQK 598



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 163/346 (47%), Gaps = 30/346 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F++L+  +   G + DA Q  +       +     C  L+  + +  +  + L+ + E++
Sbjct: 165 FDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEIL 224

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
               D G  Y PNV+ +  L++ LCK+  V   + +F E++  G+       NTL+   C
Sbjct: 225 ----DSG--YPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYC 278

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L E  RL  +M +  + P +FTY+ L++G C   ++  A  LF  M  +G +P+  
Sbjct: 279 KSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDV 338

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LING CKN  V+ A+ + ++M   G K             +    N  IDGLCK G
Sbjct: 339 TFTTLINGQCKNGRVDLALEIYQQMFTKGLKA------------DLVLYNTLIDGLCKGG 386

Query: 259 HVLEVMELFPTLEISNCELFVEIFN--SLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +  E  +     E++   L  + F   +L+ G CK G  E+A E+  ++  + +  D VA
Sbjct: 387 YFREARKFVG--EMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVA 444

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +  +I  L ++G+I      L  M   G   D  T+  +M  F +K
Sbjct: 445 FTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKK 490



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           GK + +      +  KG +   F +  L++ Y +   V +A+   R    +  K  FN  
Sbjct: 141 GKGSASSVFASILETKGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFN-- 198

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                      C   ++ + K    +  +E +  +  S     V  FN L+   CK G  
Sbjct: 199 ----------GCKCLLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKV 248

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + A  +F+++    L    V++N LI+   K G +++   L + MEE     DV T++ L
Sbjct: 249 KDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSAL 308

Query: 356 M 356
           +
Sbjct: 309 I 309


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 193/412 (46%), Gaps = 61/412 (14%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F S ++R ++P N  T+ +L+ G+  EG++     L+  M   G +P+    + LI    
Sbjct: 331 FDSMVKRGHKP-NSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYT 389

Query: 71  RTGNMNLTLKLHQEMV-------------------------NGMGDFGGIYK----PNVF 101
           + G ++  + L  +M                          + M  FG +      P+  
Sbjct: 390 KHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAV 449

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
            + +LI GLC     D+ ++L +EM  +GI  N +        LCK+  +  A  + +LM
Sbjct: 450 VFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLM 509

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           ++  +   + TY  L++GYCL GKV+ A  L + M   G  P+  +Y+ +INGYCKN  +
Sbjct: 510 VRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRI 569

Query: 214 EEAMNVSREM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIF 250
           E+A ++ R+M              IL G          K+++  M    +  +  T NI 
Sbjct: 570 EDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNII 629

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           + GLC+N    + + +F  L + +  L    FN +I    K G  + A +LF  L  + L
Sbjct: 630 LLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGL 689

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V +VV Y +++ +L ++G +++ + L LS+E+NGC  +    N L+   LQK
Sbjct: 690 VPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQK 741



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 168/387 (43%), Gaps = 43/387 (11%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQL-VKKMATFGCRPNVTTCDTL 65
           A  A G  IR  +     +TF+ L+K  C +    +A  + +++M   GC PNV +   L
Sbjct: 110 AFAALGRVIRSGWTA-EAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTIL 168

Query: 66  ITGL----RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTK 120
           + GL    R    ++L   LH  MV    D  G Y P+V  Y ++I+GL ++ R +D   
Sbjct: 169 LKGLCDENRSQQALHL---LHTMMV--ADDTRGGYPPDVVSYNTVINGLLREGRQLDTAY 223

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            LF +M D+G++ + +        L K   + +A  +L  M++ G  P   T+  LL+GY
Sbjct: 224 HLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGY 283

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--- 229
           C  GK N AI +F  M R G  PDVF+Y+ L+   CKN    EA  +   M+  G K   
Sbjct: 284 CSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNS 343

Query: 230 --------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                                + + M    + P+ +  NI I    K+G V + M LF  
Sbjct: 344 ATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSK 403

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +           +  ++   C  G  + A   F +L  + L  D V +  LIH L    +
Sbjct: 404 MRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDK 463

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
             K   L + M   G   +   FNTL+
Sbjct: 464 WDKAEELAVEMIGRGICPNNIFFNTLL 490



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 100/218 (45%), Gaps = 17/218 (7%)

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           R + ++ +  + P + TY+ +++    VG +++A A    + R G+  +  ++S L+   
Sbjct: 77  RRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKAL 136

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C      EAM+++              M +    P  F+  I + GLC      + + L 
Sbjct: 137 CDKKRTSEAMDIA-----------LRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLL 185

Query: 268 PTLEISN-----CELFVEIFNSLIRGCCKFG-IFEIASELFNKLSCKNLVADVVAYNILI 321
            T+ +++         V  +N++I G  + G   + A  LF+++  + L  DVV YN +I
Sbjct: 186 HTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSII 245

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            AL K   + K   +L+ M +NG   +  T N+L+  +
Sbjct: 246 SALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGY 283


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 168/351 (47%), Gaps = 28/351 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+  T   +++ FC +G  R+ + L ++M+  G  PN+      I GL   G +     +
Sbjct: 214 LDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHV 273

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
            +EMV      G   KPNV+ + SLIDGLCK   +++   LF+++         ++  T+
Sbjct: 274 LEEMV------GKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTV 327

Query: 137 L----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           +    CK+ KL  A  LL  M+++GL P   TYT L++G+C  G  + A  L + M  +G
Sbjct: 328 MIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEG 387

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F+P++++Y+ +I G+CK   ++EA  V R     G               +  T  I I 
Sbjct: 388 FLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHL------------DKVTYTILIT 435

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
             CK GH+   ++LF  +   +C   +  + ++I   C+    E + +LF+K     LV 
Sbjct: 436 EHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVP 495

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               Y  +I    + G++     +   M ++GC  D  T+  L IS L KE
Sbjct: 496 TKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGAL-ISSLCKE 545



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 155/367 (42%), Gaps = 61/367 (16%)

Query: 38  GNIRDASQLVKKMATFGCRPNVTTCDTLI-TGLRRTGNMNLTLKLHQEMVNGMGDFGGIY 96
           G +R+A+ ++ ++ + G    V T + ++  GLR  G         +E  +GM    G  
Sbjct: 122 GRLREAADMLLELRSHGLPLVVETANWVLRVGLRHPG----CFAHAREAFDGMARAAGGV 177

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTK-----------------------------------D 121
           +P+   + +L+ G C++   ++                                     D
Sbjct: 178 RPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTD 237

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF  M + G   N +        LC++  + +A  +LE M+ +GL P ++T+T L++G C
Sbjct: 238 LFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLC 297

Query: 174 LVGKVNVAIALFDSMAR-KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
            +G +  A  LF  + +   + P+V +Y+V+I GYCK   +  A  +   M+  G     
Sbjct: 298 KIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQG----- 352

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                  + P T T    I G CK G      EL   +++      +  +N++I G CK 
Sbjct: 353 -------LAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKK 405

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  + A ++    + + L  D V Y ILI    K+G I     L   M E  C  D+ T+
Sbjct: 406 GKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTY 465

Query: 353 NTLMISF 359
            T++  +
Sbjct: 466 TTIIAMY 472



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 141/348 (40%), Gaps = 65/348 (18%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N  T+  +I G+C EG +  A  L+ +M   G  PN  T  TLI G  + G+ +  
Sbjct: 318 YKP-NVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRA 376

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK------------------ 120
                E++N M   G  + PN++ Y ++I G CK   + +                    
Sbjct: 377 F----ELMNKMKLEG--FLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTY 430

Query: 121 -----------------DLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQ 155
                            DLF +M +K  + +         + C++ ++ ++ +L +  + 
Sbjct: 431 TILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLS 490

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
            GL P   TYT ++ GYC +GK+  A+ +F+ M + G +PD  +Y  LI+  CK   +EE
Sbjct: 491 IGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEE 550

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A            + +F  M   ++VP   T        C+   +   +     L+    
Sbjct: 551 A------------RALFETMLDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRLDKRQ- 597

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
                  ++L+R     G  + AS     +  K+   D   Y   I++
Sbjct: 598 --QAHTADALVRKLSTVGNLDAASLFLKNVLDKHYAVDHATYTSFINS 643


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 179/372 (48%), Gaps = 39/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-LTLKL 81
           N   FN     +   G I  A  +  KM   G  P+  +   LI  L + G ++   +K 
Sbjct: 29  NHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKF 88

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           +Q +  G+        PN+  + SL+ GLC     ++ ++LF EM + GI+ N +     
Sbjct: 89  NQMINEGV-------TPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTI 141

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+ +++E  RL++ +   G+ P + +Y  L++G+CL G ++ A  L + M   G 
Sbjct: 142 LCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGL 201

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------------KKIFNEMK- 236
            P+ FSY+ L++GYCK   ++ A ++ R+M+ NG                  K F+E K 
Sbjct: 202 KPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKE 261

Query: 237 -LCNVVPE-----TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
              N++        +T N  ++GLCK+  V E  ++F +L     +L +  F  +I    
Sbjct: 262 LYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALL 321

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  E A +LF  +    LV DVV Y ++   L +EG +++ + L  +ME+NG A +  
Sbjct: 322 KGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQ 381

Query: 351 TFNTLMISFLQK 362
             N L+   L +
Sbjct: 382 MLNALVRRLLHR 393



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 105/247 (42%), Gaps = 23/247 (9%)

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           K  L E + LL LM+  G++P    +    + Y   G ++ A+ +F+ M + G  PD  S
Sbjct: 8   KGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVS 67

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKKIFNEMK 236
           Y  LI+  CK   V++A     +MI  G                        +++F EM 
Sbjct: 68  YGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEML 127

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              + P     N  +  LCK G V+E   L  ++E       V  +N+LI G C  G  +
Sbjct: 128 NVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTID 187

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            AS+L   +    L  +  +YN L+H   K G+I     L   M  NG    V T+NT++
Sbjct: 188 EASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTIL 247

Query: 357 ISFLQKE 363
               Q +
Sbjct: 248 HGLFQTK 254



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 117/268 (43%), Gaps = 20/268 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
            PN   +        K  ++D+  D+F +M+  G++ + +        LCK  ++ +A  
Sbjct: 27  SPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEV 86

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
               M+  G+ P I  ++ L+ G C + K      LF  M   G  P++  ++ ++   C
Sbjct: 87  KFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLC 146

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K   V E             +++ + ++   V P+  + N  IDG C  G + E  +L  
Sbjct: 147 KEGRVMEG------------QRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLE 194

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +     +     +N+L+ G CK G  + A  LF K+    +   VV YN ++H L +  
Sbjct: 195 GMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTK 254

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
           +  +   L L+M  +G    + T+NT++
Sbjct: 255 RFSEAKELYLNMINSGTKWGIYTYNTIL 282



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 12/189 (6%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +L+GY   G ++    L + M   G  P+   +++  + Y K   +++AM+         
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMD--------- 51

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
              IFN+M+   + P+  +    ID LCK G V +    F  +        + +F+SL+ 
Sbjct: 52  ---IFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVY 108

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C    +E   ELF ++    +  ++V +N ++  L KEG++ +   L+ S+E  G   
Sbjct: 109 GLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRP 168

Query: 348 DVDTFNTLM 356
           DV ++NTL+
Sbjct: 169 DVISYNTLI 177


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 170/378 (44%), Gaps = 38/378 (10%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           +R   P N+VT+N+LI GF  EG +  ASQL+ +M +FG  PN  T + LI G    GN 
Sbjct: 291 KRMIHP-NEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 349

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
              LK+   M+   G       P+   YG L+DGLCK+   D  +  +M MK  G+    
Sbjct: 350 KEALKMFY-MMEAKG-----LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGR 403

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +        LCK   L EA  LL  M + G++P I TY+ L+NG+C VG+   A  +   
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCR 463

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM--KLCN--- 239
           + R G  P+   YS LI   C+   ++EA+ +   MIL G  +    FN +   LC    
Sbjct: 464 IYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK 523

Query: 240 ---------------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                          ++P T + +  I+G   +G  L+   +F  +           + S
Sbjct: 524 VAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGS 583

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           L++G CK G    A +    L       D V YN L+ A+ K G + K   L   M +  
Sbjct: 584 LLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRS 643

Query: 345 CALDVDTFNTLMISFLQK 362
              D  T+ +L+    +K
Sbjct: 644 ILPDSYTYTSLISGLCRK 661



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 156/343 (45%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            TFN LI   C EG+   +S L++KM   G  P + T +T++    + G     ++L   
Sbjct: 194 ATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 253

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M +   D       +V  Y  LI  LC+   + +   L  +M+ + I+ N +        
Sbjct: 254 MKSKGVD------ADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLING 307

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
              + K++ A++LL  M+  GL+P   T+  L++G+   G    A+ +F  M  KG  P 
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS 367

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY VL++G CKN   + A          GF   +  MK   V     T    IDGLCK
Sbjct: 368 EVSYGVLLDGLCKNAEFDLA---------RGF---YMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG + E + L   +     +  +  +++LI G CK G F+ A E+  ++    L  + + 
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGII 475

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y+ LI+   + G +K+   +  +M   G   D  TFN L+ S 
Sbjct: 476 YSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSL 518



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 154/382 (40%), Gaps = 65/382 (17%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN L+   C  G + +A + ++ M + G  PN  + D LI G   +G       +  EM
Sbjct: 510 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 569

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLL--- 137
              +G     + P  F YGSL+ GLCK   + + +     +         +  NTLL   
Sbjct: 570 TK-VG-----HHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAM 623

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF--DSMARKGFMP 195
           CK   L +A  L   M+QR + P  +TYT L++G C  GK  +AI LF  ++ AR   +P
Sbjct: 624 CKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAI-LFAKEAEARGNVLP 682

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           +   Y+  ++G  K    +  +    +M   G              P+  T N  IDG  
Sbjct: 683 NKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGH------------TPDIVTTNAMIDGYS 730

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFN-------------------------------- 283
           + G + +  +L P +   N    +  +N                                
Sbjct: 731 RMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKL 790

Query: 284 ---SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
              SL+ G C+  + EI  ++     C+ +  D   +N+LI      G+I     L+  M
Sbjct: 791 TCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVM 850

Query: 341 EENGCALDVDTFNTLMISFLQK 362
              G +LD DT +  M+S L +
Sbjct: 851 TSLGISLDKDTCDA-MVSVLNR 871



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 157/371 (42%), Gaps = 38/371 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+  +I G C  G + +A  L+ +M+  G  P++ T   LI G  + G      K  +E
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGR----FKTAKE 459

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TL 136
           +V  +   G    PN   Y +LI   C+   + +   ++  M  +G   +        T 
Sbjct: 460 IVCRIYRVG--LSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTS 517

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+ EA   +  M   G+ P   ++  L+NGY   G+   A ++FD M + G  P 
Sbjct: 518 LCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPT 577

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFN 233
            F+Y  L+ G CK  ++ EA    + +              +L    K         +F 
Sbjct: 578 FFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFG 637

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKF 292
           EM   +++P+++T    I GLC+ G  +  +      E     L  ++ +   + G  K 
Sbjct: 638 EMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKA 697

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G ++       ++       D+V  N +I    + G+I+K N LL  M       ++ T+
Sbjct: 698 GQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTY 757

Query: 353 NTLMISFLQKE 363
           N L+  + +++
Sbjct: 758 NILLHGYSKRK 768



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 153/353 (43%), Gaps = 36/353 (10%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           L A   F    +  + P    T+ SL+KG C  G++R+A + +K +       +    +T
Sbjct: 560 LKAFSVFDEMTKVGHHP-TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNT 618

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           L+T + ++GN+   + L  EMV           P+ + Y SLI GLC+     +T    +
Sbjct: 619 LLTAMCKSGNLAKAVSLFGEMVQRS------ILPDSYTYTSLISGLCRK---GKTVIAIL 669

Query: 125 EMKDKGINANTL------------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
             K+     N L            + K  +        E M   G  P I T   +++GY
Sbjct: 670 FAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGY 729

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
             +GK+     L   M  +   P++ +Y++L++GY K  +V  +  + R +ILNG     
Sbjct: 730 SRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNG----- 784

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEV-MELFPTLEISNCELFVEIFNSLIRGCCK 291
                  ++P+  TC+  + G+C++ ++LE+ +++         E+    FN LI  CC 
Sbjct: 785 -------ILPDKLTCHSLVLGICES-NMLEIGLKILKAFICRGVEVDRYTFNMLISKCCA 836

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            G    A +L   ++   +  D    + ++  L +  + ++   +L  M + G
Sbjct: 837 NGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQG 889



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 142/313 (45%), Gaps = 32/313 (10%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N  T+N L+ G+    ++  +  L + +   G  P+  TC +L+ G+  +  + + LK+ 
Sbjct: 753  NLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKIL 812

Query: 83   QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------- 134
            +  +  G+       + + + +  LI   C +  ++   DL   M   GI+ +       
Sbjct: 813  KAFICRGV-------EVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAM 865

Query: 135  -TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             ++L +  +  E+  +L  M ++G++P    Y  L+NG C VG +  A  + + M     
Sbjct: 866  VSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKI 925

Query: 194  MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             P   + S ++    K    +EA  + R M+         +MKL   VP   +    +  
Sbjct: 926  CPPNVAESAMVRALAKCGKADEATLLLRFML---------KMKL---VPTIASFTTLMHL 973

Query: 254  LCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             CKNG+V+E +EL   + +SNC L +++  +N LI G C  G   +A EL+ ++     +
Sbjct: 974  CCKNGNVIEALEL--RVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFL 1031

Query: 312  ADVVAYNILIHAL 324
            A+   Y  LI  L
Sbjct: 1032 ANATTYKALIRGL 1044



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 151/393 (38%), Gaps = 79/393 (20%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N V +   + G    G  +      ++M   G  P++ T + +I G  R G +  T  L 
Sbjct: 683  NKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLL 742

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             EM N  G       PN+  Y  L+ G  K + V  +  L+  +   GI  + L C    
Sbjct: 743  PEMGNQNGG------PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLV 796

Query: 143  L--VEAN------RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL---------- 184
            L   E+N      ++L+  + RG+    +T+  L++  C  G++N A  L          
Sbjct: 797  LGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGIS 856

Query: 185  -------------------------FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
                                        M+++G  P+   Y  LING C+  +++ A  V
Sbjct: 857  LDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVV 916

Query: 220  SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV---------MELFPTL 270
              EMI +         K+C   P     +  +  L K G   E          M+L PT 
Sbjct: 917  KEEMIAH---------KIC---PPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPT- 963

Query: 271  EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                    +  F +L+  CCK G    A EL   +S   L  D+V+YN+LI  L  +G +
Sbjct: 964  --------IASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDM 1015

Query: 331  KKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
                 L   M+ +G   +  T+  L+   L +E
Sbjct: 1016 ALAFELYEEMKGDGFLANATTYKALIRGLLARE 1048



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 14/201 (6%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           NP +  Y  L+  Y   G +  ++ +F  M   GF P V++ + ++    K+       +
Sbjct: 122 NPSV--YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWS 179

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
             +EM+         + K+C   P+  T NI I+ LC  G   +   L   +E S     
Sbjct: 180 FLKEML---------KRKIC---PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPT 227

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+++   CK G F+ A EL + +  K + ADV  YN+LIH L +  +I K   LL 
Sbjct: 228 IVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLR 287

Query: 339 SMEENGCALDVDTFNTLMISF 359
            M +     +  T+NTL+  F
Sbjct: 288 DMRKRMIHPNEVTYNTLINGF 308



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 95/242 (39%), Gaps = 46/242 (19%)

Query: 3    KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            K+L A +  G  + R        TFN LI   C  G I  A  LVK M + G   +  TC
Sbjct: 810  KILKAFICRGVEVDR-------YTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTC 862

Query: 63   DTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGIY----------- 96
            D +++ L R      +  +  EM               +NG+   G I            
Sbjct: 863  DAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIA 922

Query: 97   ----KPNVFCYGSLIDGLCKDRLVDQTKDLF-----MEMKDKGINANTLL---CKKTKLV 144
                 PNV    +++  L K    D+   L      M++     +  TL+   CK   ++
Sbjct: 923  HKICPPNV-AESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVI 981

Query: 145  EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
            EA  L  +M   GL   + +Y  L+ G C  G + +A  L++ M   GF+ +  +Y  LI
Sbjct: 982  EALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALI 1041

Query: 205  NG 206
             G
Sbjct: 1042 RG 1043



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
           F  +    +LCN  P  +  +I I    + G + + +E+F  + +      V   N+++ 
Sbjct: 109 FGALMTTYRLCNSNPSVY--DILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILG 166

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
              K G          ++  + +  DV  +NILI+ L  EG  +K +YL+  ME++G A 
Sbjct: 167 SVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAP 226

Query: 348 DVDTFNTLMISFLQK 362
            + T+NT++  + +K
Sbjct: 227 TIVTYNTVLHWYCKK 241


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 170/378 (44%), Gaps = 38/378 (10%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           +R   P N+VT+N+LI GF  EG +  ASQL+ +M +FG  PN  T + LI G    GN 
Sbjct: 331 KRMIHP-NEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 389

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
              LK+   M+   G       P+   YG L+DGLCK+   D  +  +M MK  G+    
Sbjct: 390 KEALKMFY-MMEAKG-----LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGR 443

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +        LCK   L EA  LL  M + G++P I TY+ L+NG+C VG+   A  +   
Sbjct: 444 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCR 503

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM--KLCN--- 239
           + R G  P+   YS LI   C+   ++EA+ +   MIL G  +    FN +   LC    
Sbjct: 504 IYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK 563

Query: 240 ---------------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                          ++P T + +  I+G   +G  L+   +F  +           + S
Sbjct: 564 VAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGS 623

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           L++G CK G    A +    L       D V YN L+ A+ K G + K   L   M +  
Sbjct: 624 LLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRS 683

Query: 345 CALDVDTFNTLMISFLQK 362
              D  T+ +L+    +K
Sbjct: 684 ILPDSYTYTSLISGLCRK 701



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 156/343 (45%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            TFN LI   C EG+   +S L++KM   G  P + T +T++    + G     ++L   
Sbjct: 234 ATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 293

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M +   D       +V  Y  LI  LC+   + +   L  +M+ + I+ N +        
Sbjct: 294 MKSKGVD------ADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLING 347

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
              + K++ A++LL  M+  GL+P   T+  L++G+   G    A+ +F  M  KG  P 
Sbjct: 348 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS 407

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY VL++G CKN   + A          GF   +  MK   V     T    IDGLCK
Sbjct: 408 EVSYGVLLDGLCKNAEFDLA---------RGF---YMRMKRNGVCVGRITYTGMIDGLCK 455

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG + E + L   +     +  +  +++LI G CK G F+ A E+  ++    L  + + 
Sbjct: 456 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGII 515

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y+ LI+   + G +K+   +  +M   G   D  TFN L+ S 
Sbjct: 516 YSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSL 558



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 155/385 (40%), Gaps = 65/385 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  TFN L+   C  G + +A + ++ M + G  PN  + D LI G   +G       + 
Sbjct: 547 DHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVF 606

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLL 137
            EM   +G     + P  F YGSL+ GLCK   + + +     +         +  NTLL
Sbjct: 607 DEMTK-VG-----HHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLL 660

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF--DSMARKG 192
              CK   L +A  L   M+QR + P  +TYT L++G C  GK  +AI LF  ++ AR  
Sbjct: 661 TAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAI-LFAKEAEARGN 719

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
            +P+   Y+  ++G  K    +  +    +M   G              P+  T N  ID
Sbjct: 720 VLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGH------------TPDIVTTNAMID 767

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFN----------------------------- 283
           G  + G + +  +L P +   N    +  +N                             
Sbjct: 768 GYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILP 827

Query: 284 ------SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
                 SL+ G C+  + EI  ++     C+ +  D   +N+LI      G+I     L+
Sbjct: 828 DKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLV 887

Query: 338 LSMEENGCALDVDTFNTLMISFLQK 362
             M   G +LD DT +  M+S L +
Sbjct: 888 KVMTSLGISLDKDTCDA-MVSVLNR 911



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 157/371 (42%), Gaps = 38/371 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+  +I G C  G + +A  L+ +M+  G  P++ T   LI G  + G      K  +E
Sbjct: 444 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGR----FKTAKE 499

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TL 136
           +V  +   G    PN   Y +LI   C+   + +   ++  M  +G   +        T 
Sbjct: 500 IVCRIYRVG--LSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTS 557

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+ EA   +  M   G+ P   ++  L+NGY   G+   A ++FD M + G  P 
Sbjct: 558 LCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPT 617

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFN 233
            F+Y  L+ G CK  ++ EA    + +              +L    K         +F 
Sbjct: 618 FFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFG 677

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKF 292
           EM   +++P+++T    I GLC+ G  +  +      E     L  ++ +   + G  K 
Sbjct: 678 EMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKA 737

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G ++       ++       D+V  N +I    + G+I+K N LL  M       ++ T+
Sbjct: 738 GQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTY 797

Query: 353 NTLMISFLQKE 363
           N L+  + +++
Sbjct: 798 NILLHGYSKRK 808



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 154/355 (43%), Gaps = 36/355 (10%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           L A   F    +  + P    T+ SL+KG C  G++R+A + +K +       +    +T
Sbjct: 600 LKAFSVFDEMTKVGHHP-TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNT 658

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           L+T + ++GN+   + L  EMV           P+ + Y SLI GLC+     +T    +
Sbjct: 659 LLTAMCKSGNLAKAVSLFGEMVQRS------ILPDSYTYTSLISGLCRK---GKTVIAIL 709

Query: 125 EMKDKGINANTL------------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
             K+     N L            + K  +        E M   G  P I T   +++GY
Sbjct: 710 FAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGY 769

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
             +GK+     L   M  +   P++ +Y++L++GY K  +V  +  + R +ILNG     
Sbjct: 770 SRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNG----- 824

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEV-MELFPTLEISNCELFVEIFNSLIRGCCK 291
                  ++P+  TC+  + G+C++ ++LE+ +++         E+    FN LI  CC 
Sbjct: 825 -------ILPDKLTCHSLVLGICES-NMLEIGLKILKAFICRGVEVDRYTFNMLISKCCA 876

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G    A +L   ++   +  D    + ++  L +  + ++   +L  M + G +
Sbjct: 877 NGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGIS 931



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 142/313 (45%), Gaps = 32/313 (10%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N  T+N L+ G+    ++  +  L + +   G  P+  TC +L+ G+  +  + + LK+ 
Sbjct: 793  NLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKIL 852

Query: 83   QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------- 134
            +  +  G+       + + + +  LI   C +  ++   DL   M   GI+ +       
Sbjct: 853  KAFICRGV-------EVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAM 905

Query: 135  -TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             ++L +  +  E+  +L  M ++G++P    Y  L+NG C VG +  A  + + M     
Sbjct: 906  VSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKI 965

Query: 194  MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             P   + S ++    K    +EA  + R M+         +MKL   VP   +    +  
Sbjct: 966  CPPNVAESAMVRALAKCGKADEATLLLRFML---------KMKL---VPTIASFTTLMHL 1013

Query: 254  LCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             CKNG+V+E +EL   + +SNC L +++  +N LI G C  G   +A EL+ ++     +
Sbjct: 1014 CCKNGNVIEALEL--RVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFL 1071

Query: 312  ADVVAYNILIHAL 324
            A+   Y  LI  L
Sbjct: 1072 ANATTYKALIRGL 1084



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 151/393 (38%), Gaps = 79/393 (20%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N V +   + G    G  +      ++M   G  P++ T + +I G  R G +  T  L 
Sbjct: 723  NKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLL 782

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             EM N  G       PN+  Y  L+ G  K + V  +  L+  +   GI  + L C    
Sbjct: 783  PEMGNQNGG------PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLV 836

Query: 143  L--VEAN------RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL---------- 184
            L   E+N      ++L+  + RG+    +T+  L++  C  G++N A  L          
Sbjct: 837  LGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGIS 896

Query: 185  -------------------------FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
                                        M+++G  P+   Y  LING C+  +++ A  V
Sbjct: 897  LDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVV 956

Query: 220  SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV---------MELFPTL 270
              EMI +         K+C   P     +  +  L K G   E          M+L PT 
Sbjct: 957  KEEMIAH---------KIC---PPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPT- 1003

Query: 271  EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                    +  F +L+  CCK G    A EL   +S   L  D+V+YN+LI  L  +G +
Sbjct: 1004 --------IASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDM 1055

Query: 331  KKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
                 L   M+ +G   +  T+  L+   L +E
Sbjct: 1056 ALAFELYEEMKGDGFLANATTYKALIRGLLARE 1088



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 14/201 (6%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           NP +  Y  L+  Y   G +  ++ +F  M   GF P V++ + ++    K+       +
Sbjct: 162 NPSV--YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWS 219

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
             +EM+         + K+C   P+  T NI I+ LC  G   +   L   +E S     
Sbjct: 220 FLKEML---------KRKIC---PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPT 267

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+++   CK G F+ A EL + +  K + ADV  YN+LIH L +  +I K   LL 
Sbjct: 268 IVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLR 327

Query: 339 SMEENGCALDVDTFNTLMISF 359
            M +     +  T+NTL+  F
Sbjct: 328 DMRKRMIHPNEVTYNTLINGF 348



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 39/223 (17%)

Query: 22   LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            ++  TFN LI   C  G I  A  LVK M + G   +  TCD +++ L R      +  +
Sbjct: 862  VDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMV 921

Query: 82   HQEM---------------VNGMGDFGGIY---------------KPNVFCYGSLIDGLC 111
              EM               +NG+   G I                 PNV    +++  L 
Sbjct: 922  LHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNV-AESAMVRALA 980

Query: 112  KDRLVDQTKDLF-----MEMKDKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIF 163
            K    D+   L      M++     +  TL+   CK   ++EA  L  +M   GL   + 
Sbjct: 981  KCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLV 1040

Query: 164  TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
            +Y  L+ G C  G + +A  L++ M   GF+ +  +Y  LI G
Sbjct: 1041 SYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1083



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 10/139 (7%)

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
           F  +    +LCN  P  +  +I I    + G + + +E+F  + +      V   N+++ 
Sbjct: 149 FGALMTTYRLCNSNPSVY--DILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILG 206

Query: 288 GCCKFG----IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
              K G    ++    E+  +  C     DV  +NILI+ L  EG  +K +YL+  ME++
Sbjct: 207 SVVKSGEDVSVWSFLKEMLKRKIC----PDVATFNILINVLCAEGSFEKSSYLMQKMEKS 262

Query: 344 GCALDVDTFNTLMISFLQK 362
           G A  + T+NT++  + +K
Sbjct: 263 GYAPTIVTYNTVLHWYCKK 281


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 167/349 (47%), Gaps = 45/349 (12%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + +TL+ 
Sbjct: 126 VWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMN 185

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+              
Sbjct: 186 GYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE-------------- 225

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                        +K+ +AN L + M+ +GL P   T+T L+ G+C  G+V++A+ ++  
Sbjct: 226 -------------SKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKX 272

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +  +PD+ +Y+ LI G CK  ++++A  +  EM + G K            P+ FT 
Sbjct: 273 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLK------------PDKFTY 320

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              IDG CK G +    +    +   N  L    + +LI G C+ G    A ++  ++  
Sbjct: 321 TTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 380

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             L  D+  Y ++I+   K+G + K + LL  M+ NG    V T+N LM
Sbjct: 381 VGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLM 429



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEIL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 135 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI G+CKN  V+ AM + + M+              +++P+  T N  I GLCK G
Sbjct: 249 TFTTLIXGHCKNGRVDLAMEIYKXMLSQ------------SLLPDLITYNTLIYGLCKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   + +   +     + +LI GCCK G  + A +   ++   N+  D VAY 
Sbjct: 297 DLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D+ T+  ++  F +K
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKK 400



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 98/193 (50%), Gaps = 16/193 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K M +    P++ T +TLI GL + G++     L 
Sbjct: 246 NGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLI 305

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM + G+       KP+ F Y +LIDG CK+  +D        M    I  + +     
Sbjct: 306 DEMSMKGL-------KPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTAL 358

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ + V+A ++L  M+  GL P I TYT ++N +C  G V     L   M R G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 418

Query: 194 MPDVFSYSVLING 206
           +P V +Y+VL+NG
Sbjct: 419 VPSVVTYNVLMNG 431


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 181/398 (45%), Gaps = 72/398 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+++  FC +G +++A QL+ +M   GC PN  T + L+ GL  +G M    +L Q+
Sbjct: 203 VTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQD 262

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M+  +G      + +V+ Y  LI G C+   +++   L  EM  +G     +  NT+   
Sbjct: 263 MLR-LG-----LEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYG 316

Query: 137 LCKKTKLVEANRLLELMMQ-----------------------------------RGLNPV 161
           LCK  ++ +A +LL++M+                                    R L P 
Sbjct: 317 LCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPS 376

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           + TY  L++G C +G ++VA+ L D M + G  PDVF+++  + G+CK  N+  A  +  
Sbjct: 377 VVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFD 436

Query: 222 EMILNGFK--------KIFNEMKLCN---------------VVPETFTCNIFIDGLCKNG 258
           EM+  G +        +I  E+KL +                 P+  T N+FIDGL K G
Sbjct: 437 EMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLG 496

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           ++ E  EL   +  +        + S+I      G    A  LF ++  K +   VV Y 
Sbjct: 497 NLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYT 556

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +LIH+    G++K        M E G   +V T+N L+
Sbjct: 557 VLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALI 594



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 151/355 (42%), Gaps = 61/355 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N+LI G+   GNI +A  L  ++      P+V T +TLI GL R G++++ ++L  E
Sbjct: 343 VSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDE 402

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+    D      P+VF + + + G CK   +   K+LF EM ++G+  +          
Sbjct: 403 MIKHGPD------PDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVG 456

Query: 137 -----------------------------------LCKKTKLVEANRLLELMMQRGLNPV 161
                                              L K   L EA+ L++ M+  GL P 
Sbjct: 457 ELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPD 516

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
             TYT +++ + + G +  A ALF  M  KG  P V +Y+VLI+ Y     ++ A     
Sbjct: 517 HVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLA----- 571

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
             IL+ F     EM    V P   T N  I+GLCK   + +    F  ++          
Sbjct: 572 --ILHFF-----EMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYT 624

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
           +  LI   C  G ++ A  L+  +  + +  D   +  L+  L K+ ++    +L
Sbjct: 625 YTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNKDYKLHVVRHL 679



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 146/321 (45%), Gaps = 25/321 (7%)

Query: 49  KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108
           KM + G  P+V  C+ ++  LR   N    + + +E+ N M + G    P V  Y +++D
Sbjct: 156 KMVSKGLLPDVKNCNRVLRLLRDRDN---NIDVAREVYNVMVECGIC--PTVVTYNTMLD 210

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNP 160
             CK  +V +   L  +M+  G + N +        L    ++ +A  L++ M++ GL  
Sbjct: 211 SFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEV 270

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            ++TY PL+ GYC  G++  A  L + M  +G +P V +Y+ ++ G CK   V +A    
Sbjct: 271 SVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDA---- 326

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                   +K+ + M   N++P+  + N  I G  + G++ E   LF  L   +    V 
Sbjct: 327 --------RKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVV 378

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            +N+LI G C+ G  ++A  L +++       DV  +   +    K G +     L   M
Sbjct: 379 TYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEM 438

Query: 341 EENGCALDVDTFNTLMISFLQ 361
              G   D   + T ++  L+
Sbjct: 439 LNRGLQPDRFAYITRIVGELK 459



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 18/211 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + +T+N  I G    GN+++AS+LVKKM   G  P+  T  ++I      G++     
Sbjct: 479 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARA 538

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  EM++      GI+ P+V  Y  LI        +      F EM +KG++ N +    
Sbjct: 539 LFLEMLSK-----GIF-PSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNA 592

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  K+ +A      M  +G++P  +TYT L+N  C +G    A+ L+  M  + 
Sbjct: 593 LINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDRE 652

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
             PD  ++  L+    K+ N +  ++V R +
Sbjct: 653 IQPDSCTHRSLL----KHLNKDYKLHVVRHL 679



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 11/173 (6%)

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           +F  M  KG +PDV           KN N    +   R+  ++  ++++N M  C + P 
Sbjct: 153 VFYKMVSKGLLPDV-----------KNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPT 201

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T N  +D  CK G V E ++L   ++   C      +N L+ G    G  E A EL  
Sbjct: 202 VVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQ 261

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +    L   V  Y+ LI    ++GQI++ + L   M   G    V T+NT+M
Sbjct: 262 DMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIM 314


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 164/350 (46%), Gaps = 47/350 (13%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + +TL+ 
Sbjct: 115 VWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMN 174

Query: 68  GLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           G  R G+++   +L   M  +G+       +P+V+ Y  LI+GLCK+  +D         
Sbjct: 175 GYIRLGDLDEGFRLKSAMRASGV-------QPDVYTYSVLINGLCKESXMD--------- 218

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                             +AN L + M+ +GL P   T+T L++G+C  G+V++A+ ++ 
Sbjct: 219 ------------------DANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYK 260

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M  +  +PD+ +Y+ L+ G CK  ++ +A  +  EM   G K            P+ FT
Sbjct: 261 QMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLK------------PDKFT 308

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
               IDG CK G +    E    +   N  L    + +LI G C+ G    A ++  ++ 
Sbjct: 309 YTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREML 368

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              L  D   Y ++I+   K+G + K + LL  M+ NG    V T+N LM
Sbjct: 369 SVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLM 418



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 113/249 (45%), Gaps = 23/249 (9%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   +  A  + + + + GL P + +Y  L+NGY  +G ++    L  +M   G  PD
Sbjct: 141 FCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPD 200

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFN 233
           V++YSVLING CK   +++A  +  EM++ G                         +I+ 
Sbjct: 201 VYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYK 260

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +M    ++P+  T N  + GLCK G + +   L   +     +     + +LI GCCK G
Sbjct: 261 QMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEG 320

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A E   ++  +N+  D VAY  LI  L +EG+      +L  M   G   D  T+ 
Sbjct: 321 DLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYT 380

Query: 354 TLMISFLQK 362
            ++  F +K
Sbjct: 381 MIINEFCKK 389



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 114/236 (48%), Gaps = 26/236 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI G C E  + DA++L  +M   G  PN  T  TLI G  + G ++L ++++++M
Sbjct: 203 TYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQM 262

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL--- 137
           ++          P++  Y +L+ GLCK   ++Q   L  EM  KG+  +     TL+   
Sbjct: 263 LSQX------LLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGC 316

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+  L  A    + M+Q  +      YT L++G C  G+   A  +   M   G  PD 
Sbjct: 317 CKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDT 376

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            +Y+++IN +CK  +V +   + +EM  NG             VP   T N+ ++G
Sbjct: 377 GTYTMIINEFCKKGDVWKGSKLLKEMQRNGH------------VPXVVTYNVLMNG 420



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 16/193 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TL+ GL + G++N    L 
Sbjct: 235 NXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLI 294

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM   G+       KP+ F Y +LIDG CK+  +D   +    M  + I  + +     
Sbjct: 295 DEMXXKGL-------KPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAL 347

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ +  +A ++L  M+  GL P   TYT ++N +C  G V     L   M R G 
Sbjct: 348 ISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 407

Query: 194 MPDVFSYSVLING 206
           +P V +Y+VL+NG
Sbjct: 408 VPXVVTYNVLMNG 420



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+DV + +LI G C EG   DA +++++M + G +P+  T   +I    + G++    KL
Sbjct: 339 LDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKL 398

Query: 82  HQEMV-NGMGDFGGIYKPNVFCYGSLIDG 109
            +EM  NG       + P V  Y  L++G
Sbjct: 399 LKEMQRNG-------HVPXVVTYNVLMNG 420



 Score = 44.3 bits (103), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 23/184 (12%)

Query: 196 DVFSYSVLINGYCKNFNVEEAM---NVSRE-----------------MILNGFKKI---F 232
           D++ +S LI  Y ++  + +A+    ++RE                 M L  FK +   +
Sbjct: 60  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFY 119

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            E+  C      +  NI +   CK+G +     +F  +        V  +N+L+ G  + 
Sbjct: 120 EEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRL 179

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  +    L + +    +  DV  Y++LI+ L KE  +   N L   M   G   +  TF
Sbjct: 180 GDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTF 239

Query: 353 NTLM 356
            TL+
Sbjct: 240 TTLI 243


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 166/355 (46%), Gaps = 49/355 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+L+  FC  G +  A +LV  M   G +PN+ T ++++ G+ + G M    K+ 
Sbjct: 191 NAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVF 250

Query: 83  QEMV-NGMGDFGGIYK----------------------------PNVFCYGSLIDGLCKD 113
            EMV  G+   G  Y                             P+V  + SLI  +CK 
Sbjct: 251 DEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKA 310

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             +++   L  EM+++G+  N +         CKK  L +A   +  M Q  + P +  Y
Sbjct: 311 GNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCY 370

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L+NGYC+VG+++ A  L   M  KG  PDV +YS +++ YCKN +   A  ++++M+ 
Sbjct: 371 NALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLE 430

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
           NG            V+P+  T +  I  LC+   + +   LF  +     +     + SL
Sbjct: 431 NG------------VLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSL 478

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
           I G CK G  E A  L +++    ++ DVV Y++LI+ L K  + K+   LL  +
Sbjct: 479 IDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKL 533



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 161/336 (47%), Gaps = 49/336 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L++  C  G+ ++A  +++ M   GC PN  T +TL+    R G ++   +L 
Sbjct: 156 NVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLV 215

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             M  G     G+ KPN+  + S+++G+CK   ++  + +F EM                
Sbjct: 216 DMMREG-----GL-KPNLVTFNSVVNGICKAGRMEDARKVFDEM---------------- 253

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                      ++ GL P   +Y  L+ GYC VG  + A+++F  M RKG MPDV +++ 
Sbjct: 254 -----------VKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTS 302

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI+  CK  N+E A+ + REM   G +   NE+        TFT    IDG CK G + +
Sbjct: 303 LIHVMCKAGNLERAVGLVREMRERGLQ--MNEI--------TFTA--LIDGFCKKGFLDD 350

Query: 263 VMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
              L    E+  C +   +  +N+LI G C  G  + A EL  ++  K +  DVV Y+ +
Sbjct: 351 A--LLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTI 408

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + A  K G       L   M ENG   D  T+++L+
Sbjct: 409 LSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLI 444



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 155/322 (48%), Gaps = 52/322 (16%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N++TF +LI GFC +G + DA   V++M     +P+V   + LI G    G M+   +L
Sbjct: 330 MNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEAREL 389

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM     +  G+ KP+V  Y +++   CK+        L  +M + G+  + +     
Sbjct: 390 VREM-----EAKGV-KPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSL 443

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ +L +A+ L + M+  GL P   TYT L++G+C  G V  A++L D M + G 
Sbjct: 444 IRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGV 503

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PDV +YSVLING  K+   +EA  +          K+++E        E    NI  D 
Sbjct: 504 LPDVVTYSVLINGLSKSARTKEAQRL--------LFKLYHE--------EPVPANIKYDA 547

Query: 254 L---CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           L   C+N  +  V+                   +L++G C  G+   A +++  +  +N 
Sbjct: 548 LMRCCRNAELKSVL-------------------ALLKGFCMKGLMNEADKVYQSILDRNW 588

Query: 311 VADVVAYNILIHALGKEGQIKK 332
             D   Y++LIH   +EG + K
Sbjct: 589 NLDGSVYSVLIHGHCREGNVMK 610



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 127/270 (47%), Gaps = 20/270 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           PNV+ Y  L+  LC      +   +  +M+  G + N +         C+  ++  A RL
Sbjct: 155 PNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERL 214

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           +++M + GL P + T+  ++NG C  G++  A  +FD M ++G  PD  SY+ L+ GYCK
Sbjct: 215 VDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCK 274

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                EA++V            F EM    ++P+  T    I  +CK G++   + L   
Sbjct: 275 VGCSHEALSV------------FAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVRE 322

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     ++    F +LI G CK G  + A     ++    +   VV YN LI+     G+
Sbjct: 323 MRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGR 382

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + +   L+  ME  G   DV T++T++ ++
Sbjct: 383 MDEARELVREMEAKGVKPDVVTYSTILSAY 412



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 107/231 (46%), Gaps = 12/231 (5%)

Query: 132 NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           NA  L      L  A R  + M+  G+ P ++TY  L+   C  G    A+++   M   
Sbjct: 127 NAVLLALSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGA 186

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+  +Y+ L+  +C+   V+ A            +++ + M+   + P   T N  +
Sbjct: 187 GCDPNAVTYNTLVAAFCRAGEVDRA------------ERLVDMMREGGLKPNLVTFNSVV 234

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +G+CK G + +  ++F  +           +N+L+ G CK G    A  +F +++ K ++
Sbjct: 235 NGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIM 294

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            DVV +  LIH + K G +++   L+  M E G  ++  TF  L+  F +K
Sbjct: 295 PDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKK 345


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 176/350 (50%), Gaps = 26/350 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTFN+LI   C  G      Q++ +M   GC P++    T++ G+ + G+    L+
Sbjct: 257 PPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGH----LE 312

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANT 135
           +  E+++ M  +G   KPNV CY +++ GLC     +Q ++L  EM D       +  N 
Sbjct: 313 VAHEILDRMPSYG--LKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNI 370

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+   C+   +     LLE M++ G  P + TYT ++NG+C  G ++ A+ L  SMA  G
Sbjct: 371 LVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACG 430

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+  SY++++ G C      +A ++  +MI  G          C+  P TF  N  I+
Sbjct: 431 CRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQG----------CSPNPVTF--NTVIN 478

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK G V + +EL   + ++ C   +  ++++I G  K G  + A EL N +  K +  
Sbjct: 479 FLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 538

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + + Y+ +  AL KEG+I +   +  ++++     D   +N ++ S  ++
Sbjct: 539 NTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKR 588



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 26/254 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+ ++I GFC EG I +A  L+K MA  GCRPN  +   ++ GL           L  +
Sbjct: 401 ITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQ 460

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+           PN   + ++I+ LCK  LV+Q  +L  +M   G + + +        
Sbjct: 461 MIEQG------CSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDG 514

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K  K  EA  LL +M+ +G++P    Y+ + +     G++N  I +FD++       D
Sbjct: 515 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSD 574

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
              Y+ +I+  CK    + A+     M+ +G             +P   T  I I GL  
Sbjct: 575 AVLYNAVISSLCKRGGTDRAIEFLAYMVSSG------------CMPNESTYTILIRGLAS 622

Query: 257 NGHVLEVMELFPTL 270
            G V E  E+   L
Sbjct: 623 EGFVKEAQEMLTEL 636



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 124/312 (39%), Gaps = 34/312 (10%)

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + +++G  R G +    +L   +            PN + Y  ++  LC    +     +
Sbjct: 87  NAMVSGYCRAGQLASARRLAASVP---------VPPNAYTYFPVVRALCARGRIADALSV 137

Query: 123 FMEMKDKG-----------INANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
             EM+ +G           + A            A R+L+ +  RG    +     +LN 
Sbjct: 138 LDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNA 197

Query: 172 YC-LVGKVNVAIALFDSMARK-GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
            C   G V+ A+ L   +    G  PDV SY+ ++ G C         ++  EM+  G  
Sbjct: 198 VCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCP 257

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                       P   T N  I  LC+NG    V ++   +    C   + ++ +++ G 
Sbjct: 258 ------------PNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGV 305

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G  E+A E+ +++    L  +VV YN ++  L    + ++   LL  M +N C LD 
Sbjct: 306 CKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDD 365

Query: 350 DTFNTLMISFLQ 361
            TFN L+  F Q
Sbjct: 366 VTFNILVDFFCQ 377


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 184/394 (46%), Gaps = 55/394 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V +N+L+  FC +    +A +LV++M   G  P+V T ++ I+ L R G +    ++
Sbjct: 217 VNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEASRI 276

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
            ++M   M    G+ KPNV  +  ++ G C++ ++++ + L   MK  G      + NT 
Sbjct: 277 FRDM--QMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTW 334

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L +  KL+E   +L+ M++ G+ P I++Y  +++G C    +  A  L D M   G 
Sbjct: 335 LLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGV 394

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKK 230
            PD  +Y+ L++GYC    V EA  +  EMI  G                        ++
Sbjct: 395 YPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEE 454

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL-------------------E 271
           +  +M   +   +T TCNI ++GLC+NG + +  E+   +                    
Sbjct: 455 MLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNS 514

Query: 272 ISNCELFVE---IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
           I N    V     + +LI G CK G  E A + F ++  KNL  D V Y+  +    K+G
Sbjct: 515 IHNVSTNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQG 574

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +I     +L  ME NGC+  + T+N+L++    K
Sbjct: 575 KISSALRVLKDMERNGCSKTLQTYNSLILGLGSK 608



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 166/353 (47%), Gaps = 26/353 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFN ++KGFC EG + +A  LV+ M   G   ++ + +T + GL R G +     + 
Sbjct: 292 NVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVL 351

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EMV NG+       +PN++ Y  ++DGLC++ ++   + L   M   G+  +T+     
Sbjct: 352 DEMVENGI-------EPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTL 404

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C K K+ EA  +L  M+++G +P  +T   LLN     G+ + A  +   M  K +
Sbjct: 405 LHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSY 464

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV----------PE 243
             D  + ++++NG C+N  +E+A  V  EM  +G   +  E  +  +V          P+
Sbjct: 465 QLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPD 524

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T    I+GLCK G + E  + F  +   N       +++ +   CK G    A  +  
Sbjct: 525 VITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLK 584

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +        +  YN LI  LG +GQI +   L+  M E G   D+ T+N ++
Sbjct: 585 DMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMI 637



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 156/344 (45%), Gaps = 34/344 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI+  C    +  A +L  KM+  GC+PN  T   L+ G  R G     L    E 
Sbjct: 153 TFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQAL----EF 208

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
           V+  G  GG    N   Y +L+   CK  + D+ + L   M +KG+  +        + L
Sbjct: 209 VD--GKMGG--NVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISAL 264

Query: 138 CKKTKLVEANRLLELMMQRG----LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           C+  K+ EA+R+   M   G      P + T+  +L G+C  G +  A +L ++M + G 
Sbjct: 265 CRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGN 324

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
              + SY+  + G  +N  + E  +V  EM+ NG            + P  ++ NI +DG
Sbjct: 325 FVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENG------------IEPNIYSYNIVMDG 372

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG-IFEIASELFNKLSCKNLVA 312
           LC+N  +L+   L   +  +        + +L+ G C  G +FE A  + N++  K    
Sbjct: 373 LCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFE-AKAILNEMIRKGCHP 431

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +    N L+++L KEG+  +   +L  M E    LD  T N ++
Sbjct: 432 NTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVV 475



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 170/391 (43%), Gaps = 79/391 (20%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +L+ G+C +G + +A  ++ +M   GC PN  TC+TL+  L + G  +   ++ Q+
Sbjct: 399 VTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQK 458

Query: 85  M---------------VNGMGDFGGIYK-------------------------------- 97
           M               VNG+   G + K                                
Sbjct: 459 MNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNV 518

Query: 98  ----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVE 145
               P+V  Y +LI+GLCK   +++ K  F+EM  K ++ +++         CK+ K+  
Sbjct: 519 STNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISS 578

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A R+L+ M + G +  + TY  L+ G    G++     L D M  +G  PD+ +Y+ +IN
Sbjct: 579 ALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMIN 638

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
             C+    ++A ++  EM+  G            V P   +  I I   CK+G      E
Sbjct: 639 CLCEGGKTKDATSLLHEMLDKGV-----------VSPNVSSFKILIKAFCKSGDFKVACE 687

Query: 266 LFPTLEISNC----ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           LF  + +S C     L+  +FN L+ G    G    A ELF     ++L++    Y  LI
Sbjct: 688 LF-DVALSVCGHKEALYSLMFNELLAG----GKLSDAKELFEASLERSLLSKNFMYEDLI 742

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             L K+G++   + LL  + + G   D  +F
Sbjct: 743 DKLCKDGRLDDAHGLLQKLIDKGYCFDHSSF 773



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 108/229 (47%), Gaps = 25/229 (10%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+Q G+NP  +T+  L+   C    ++ A  LFD M+ KG  P+ F+  +L+ G+C+   
Sbjct: 142 MIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGR 201

Query: 213 VEEAM---------NVSR---EMILNGF---------KKIFNEMKLCNVVPETFTCNIFI 251
            ++A+         NV+R     +++ F         +K+   M    ++P+  T N  I
Sbjct: 202 TKQALEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRI 261

Query: 252 DGLCKNGHVLEVMELFPTLEISN----CELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
             LC+ G V E   +F  +++       +  V  FN +++G C+ G+ E A  L   +  
Sbjct: 262 SALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKK 321

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                 + +YN  +  L + G++ +   +L  M ENG   ++ ++N +M
Sbjct: 322 GGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVM 370



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 49/246 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+++ +  FC +G I  A +++K M   GC   + T ++LI GL   G +     L 
Sbjct: 559 DSVTYDTFVLNFCKQGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLM 618

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM        GI+ P++  Y ++I+ LC+         L  EM DKG+ +  +      
Sbjct: 619 DEMRER-----GIH-PDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSPNVSSFKIL 672

Query: 137 ---LCKKT----------------------------------KLVEANRLLELMMQRGLN 159
               CK                                    KL +A  L E  ++R L 
Sbjct: 673 IKAFCKSGDFKVACELFDVALSVCGHKEALYSLMFNELLAGGKLSDAKELFEASLERSLL 732

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
              F Y  L++  C  G+++ A  L   +  KG+  D  S+  +I+G  K  N ++A  +
Sbjct: 733 SKNFMYEDLIDKLCKDGRLDDAHGLLQKLIDKGYCFDHSSFIPVIDGLSKRGNKQQADEL 792

Query: 220 SREMIL 225
            R M L
Sbjct: 793 GRIMEL 798



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 2/124 (1%)

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           ++ +M    V PET+T N+ I  LC++  +    ELF  +    C+        L+RG C
Sbjct: 138 LYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFC 197

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           + G  + A E  +     N+  + V YN L+ +  K+    +   L+  M E G   DV 
Sbjct: 198 RAGRTKQALEFVDGKMGGNV--NRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVV 255

Query: 351 TFNT 354
           TFN+
Sbjct: 256 TFNS 259


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 185/372 (49%), Gaps = 37/372 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+N+L+   C   N  +A  +   M   G  P++ +  +LI    R G+++  L   
Sbjct: 289 DTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYF 348

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           ++M        G+   NV  Y  LI+G C++ ++ +  ++  +M ++G     +  NT+L
Sbjct: 349 RDMKTS-----GLVPDNVI-YTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTIL 402

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CKK  L +AN L + M++RG+ P   T+T L++G+C  G +  A++LF  M +K   
Sbjct: 403 NGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIK 462

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGF---------KKI 231
           PD+ +Y++LI+G+CK   +E+A  +  EMI              +NG+          ++
Sbjct: 463 PDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRL 522

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           ++EM    + P   TCN  I G C++G + +  E    +           +N+LI G  K
Sbjct: 523 WDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVK 582

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               + A  L NK+  K L  DVV YN++++   ++G++++   +L  M E G   D  T
Sbjct: 583 GEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRST 642

Query: 352 FNTLMISFLQKE 363
           + TL+  ++ ++
Sbjct: 643 YTTLINGYVSQD 654



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 177/369 (47%), Gaps = 37/369 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++++ F+ LI+ +     + + +   K +   G   ++  C++L+ GL + G ++L  ++
Sbjct: 113 VDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEV 172

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL 136
           + E+        GI + NV+    +++ LCKD  +D  K   ++M+ KGI A     NTL
Sbjct: 173 YNEIARS-----GI-ELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTL 226

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   C++  L EA  ++  M  +GL P +FTY  ++NG C  G+   A  +F+ M   G 
Sbjct: 227 INAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGL 286

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK----------------------- 230
            PD  +Y+ L+   C+N N  EA ++  +M+  G                          
Sbjct: 287 SPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALM 346

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
            F +MK   +VP+     I I+G C+NG + E +E+   +    C L V  +N+++ G C
Sbjct: 347 YFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLC 406

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K  +   A+ LF+++  + +V D   +  LIH   KEG + K   L   M +     D+ 
Sbjct: 407 KKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIV 466

Query: 351 TFNTLMISF 359
           T+N L+  F
Sbjct: 467 TYNILIDGF 475



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 178/398 (44%), Gaps = 60/398 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI  +C EG + +A +++  M+  G +P + T + +I GL + G       +  E
Sbjct: 221 VTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNE 280

Query: 85  MVN-GMGDFGGIY----------------------------KPNVFCYGSLIDGLCKDRL 115
           M++ G+      Y                             P++  + SLI    ++  
Sbjct: 281 MLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGH 340

Query: 116 VDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           +DQ    F +MK  G+  + ++        C+   + EA  + + M+++G    +  Y  
Sbjct: 341 LDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNT 400

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN--------- 218
           +LNG C    +  A ALFD M  +G +PD  +++ LI+G+CK  N+ +A++         
Sbjct: 401 ILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKN 460

Query: 219 -----VSREMILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
                V+  ++++GF K         ++NEM    + P   +  I ++G C  G V E  
Sbjct: 461 IKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAF 520

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            L+  +     +  +   N++I+G C+ G    A E   K+  + +  D + YN LI+  
Sbjct: 521 RLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGF 580

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            K   + K  +L+  ME  G   DV T+N ++  F ++
Sbjct: 581 VKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQ 618



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 159/352 (45%), Gaps = 27/352 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           ALM F         P ++V +  LI G+C  G + +A ++  KM   GC  +V   +T++
Sbjct: 344 ALMYFRDMKTSGLVP-DNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTIL 402

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL +   +     L  EMV       G+  P+   + +LI G CK+  + +   LF  M
Sbjct: 403 NGLCKKKLLADANALFDEMVER-----GVV-PDFCTFTTLIHGHCKEGNMGKALSLFGIM 456

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             K I  + +         CK T++ +AN L   M+ R + P   +Y  L+NGYC +G V
Sbjct: 457 TQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFV 516

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + A  L+D M RKG  P + + + +I GYC++ ++ +A     +MI  G           
Sbjct: 517 SEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEG----------- 565

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            V P++ T N  I+G  K  ++ +   L   +E    +  V  +N ++ G C+ G  + A
Sbjct: 566 -VGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEA 624

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
             +  K+  + +  D   Y  LI+    +  +K+       M + G   D D
Sbjct: 625 ELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPDDD 676


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 170/348 (48%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++ +LI G C  G + +A +   +M   GC P V T   L+  L  +G     L L 
Sbjct: 254 NAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLF 313

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM     +      PNV+ Y  LID LCK+  +D+   +  EM +KG+  + +      
Sbjct: 314 GEMRERGCE------PNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALI 367

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+  + +A  +L LM  + + P + TY  L+ G+C    ++ A+AL + M      
Sbjct: 368 GSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLS 427

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV +Y+ LI+G C+   V+ A  + R MI +GF             P+ +T N F+  L
Sbjct: 428 PDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFS------------PDQWTFNAFMVCL 475

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G V E  ++  +L+  + +     + +LI G CK G  E A+ LF ++  +  + + 
Sbjct: 476 CRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNS 535

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + +N++I  L KEG+++    L+  M +      + T+N L+   L++
Sbjct: 536 ITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKE 583



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 173/371 (46%), Gaps = 35/371 (9%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + + L AL  FG    R   P N  T+  LI   C EG + +A +++ +M   G  P+V 
Sbjct: 303 SGRELEALSLFGEMRERGCEP-NVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVV 361

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLV 116
             + LI    + G M           + +G  G +      PNV  Y  LI G C+ + +
Sbjct: 362 PFNALIGSYCKRGMME----------DAVGVLGLMESKKVCPNVRTYNELICGFCRGKSM 411

Query: 117 DQTKDLFMEMKDKGINA-----NTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           D+   L  +M +  ++      NTL   LC+   +  A+RL  LM++ G +P  +T+   
Sbjct: 412 DRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAF 471

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           +   C +G+V  A  + +S+  K    +  +Y+ LI+GYCK   +E A ++        F
Sbjct: 472 MVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASL--------F 523

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           K++  E      +P + T N+ IDGL K G V + M L   +   + +  +  +N L+  
Sbjct: 524 KRMLAE----ECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEE 579

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K   F+ A+E+ N+L       +VV Y   I A   +G++++   +++ ++  G  LD
Sbjct: 580 VLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLD 639

Query: 349 VDTFNTLMISF 359
              +N L+ ++
Sbjct: 640 SFIYNLLINAY 650



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 139/305 (45%), Gaps = 22/305 (7%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           PN+ T +T++    + GNM +       ++           P++F Y SL+ G C++  V
Sbjct: 187 PNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPG------PDLFTYTSLVLGYCRNDDV 240

Query: 117 DQTKDLFMEMKDKGINANT----LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           ++   +F  M  +   + T     LC+  KL EA      M + G  P + TYT L+   
Sbjct: 241 ERACGVFCVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCAL 300

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  G+   A++LF  M  +G  P+V++Y+VLI+  CK   ++EA+ +  EM+  G     
Sbjct: 301 CESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKG----- 355

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                  V P     N  I   CK G + + + +   +E       V  +N LI G C+ 
Sbjct: 356 -------VAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRG 408

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              + A  L NK+    L  DVV YN LIH L + G +   + L   M  +G + D  TF
Sbjct: 409 KSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTF 468

Query: 353 NTLMI 357
           N  M+
Sbjct: 469 NAFMV 473



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 165/397 (41%), Gaps = 72/397 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+  + +LI G+C  G I  A+ L K+M    C PN  T + +I GLR+ G +   + L 
Sbjct: 499 NEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLL- 557

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
              V  M  F    KP +  Y  L++ + K+   D+  ++   +   G   N +      
Sbjct: 558 ---VEDMAKFD--VKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFI 612

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C + +L EA  ++  +   G+    F Y  L+N Y  +G ++ A  +   M   G  
Sbjct: 613 KAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCE 672

Query: 195 PDVFSYSVLINGYCKNFNVEEAMN-VSREMILNG--------FKKI--------FNEMKL 237
           P   +YS+L+       + +E  N V  ++ L          + KI        F +M  
Sbjct: 673 PSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAE 732

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE---ISNCELFVEIFNSLIRGCCKFGI 294
           C  VP   T +  I+GLCK G +     L+  +    IS  E+   I NSL+  CCK G+
Sbjct: 733 CGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEI---IHNSLLSSCCKLGM 789

Query: 295 FEIASELFNKL-SCKNLVA----------------------------------DVVAYNI 319
           F  A  L + +  C +L                                    D VA+ +
Sbjct: 790 FGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKV 849

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           LI  L K G + + + LL  ME+NGC L  +T++ LM
Sbjct: 850 LIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLM 886



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 128/295 (43%), Gaps = 34/295 (11%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N VT+ + IK +C +G + +A ++V K+   G   +    + LI      G ++  
Sbjct: 601 YQP-NVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSA 659

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD---LFMEMKDKGINANT 135
             + + M      FG   +P+   Y  L+  L  ++   +  +   L + + +  ++ NT
Sbjct: 660 FGVLRRM------FGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVD-NT 712

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            +  K        L E M + G  P + TY+ L+NG C VG++NVA +L+  M   G  P
Sbjct: 713 DIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISP 772

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMI-------LNGFK----------------KIF 232
               ++ L++  CK     EA+ +   M+       L  +K                 +F
Sbjct: 773 SEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVF 832

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
             +  C    +     + IDGL K G+V +  EL   +E + C L  E ++ L++
Sbjct: 833 CSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQ 887



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 22/228 (9%)

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
           LL +   L  A  +   M++   +P   T+  LLN   L+ ++N A A  D   +  F  
Sbjct: 95  LLVRHRTLRAAENVRNSMIKSCTSPHDATF--LLN---LLRRMNTAAAAADHQHQLAFKL 149

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
            + SY+ L+    +   V+E +++ +EM+ +    +F         P   T N  ++  C
Sbjct: 150 SLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVF---------PNLITLNTMLNSYC 200

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           K G+ + V  LF  + I  CE   ++F   SL+ G C+    E A  +F  +  +N    
Sbjct: 201 KLGN-MAVARLF-FVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRN---- 254

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            V+Y  LIH L + G++ +       M E+GC   V T+  L+ +  +
Sbjct: 255 AVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCE 302


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 180/373 (48%), Gaps = 40/373 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKK-MATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           N V FN+LI G+   G + +A  ++ + M + GC P++ T +TLI GL + G +    +L
Sbjct: 352 NVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSAREL 411

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
             EM + G        +PNV  Y  LID  CK+  +++ +++  EM  KG+  N +    
Sbjct: 412 MNEMQIKGC-------EPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNC 464

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  K+ +A  +   M  +G  P IFT+  L+ G C V K   A+ L+  M  +G
Sbjct: 465 LISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEG 524

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL----------NGFKK------------ 230
            + +  +Y+ LI+ + +   ++EA+ +  +M+           NG  K            
Sbjct: 525 VIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGL 584

Query: 231 -IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            +F +M    + P   +CNI I+GLC+ G++   +E    +        +  +NSLI G 
Sbjct: 585 ALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGL 644

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G  + A  LF+KL  + +  D + YN LI    KEG     + LL    ++G   + 
Sbjct: 645 CKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNE 704

Query: 350 DTFNTLMISFLQK 362
            T+  L+ +F+++
Sbjct: 705 VTWYILVSNFIKE 717



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 171/367 (46%), Gaps = 50/367 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT------- 78
           TF  ++K  C+   +  A  L+K M   GC PN     TLI  L + G +N         
Sbjct: 219 TFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEM 278

Query: 79  ----------------------LKLHQ--EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR 114
                                 L++H+  ++V+ M   G  + PN F YG L+ GLC+  
Sbjct: 279 LLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRG--FTPNSFTYGVLMHGLCRMG 336

Query: 115 LVDQTKDLFMEMKDKGINA-NTLL---CKKTKLVEANRLL-ELMMQRGLNPVIFTYTPLL 169
            VD+ + L  ++ +  +   NTL+     + +L EA  ++ E M+  G  P IFTY  L+
Sbjct: 337 KVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLI 396

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
            G C  G +  A  L + M  KG  P+V +Y++LI+ +CK   +EEA NV  EM   G  
Sbjct: 397 LGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLA 456

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                    N V      N  I  LCK+  V + + +F  +    C+  +  FNSLI G 
Sbjct: 457 --------LNAV----GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGL 504

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK   FE A  L+  +  + ++A+ + YN LIHA  + G +++   L+  M   GC LD 
Sbjct: 505 CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDD 564

Query: 350 DTFNTLM 356
            T+N L+
Sbjct: 565 ITYNGLI 571



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 166/350 (47%), Gaps = 34/350 (9%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R + P N  T+  L+ G C  G + +A  L+ K+      PNV   +TLI G    G ++
Sbjct: 316 RGFTP-NSFTYGVLMHGLCRMGKVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLD 370

Query: 77  -LTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
                +H+ M++ G G       P++F Y +LI GLCK   +   ++L  EM+ KG   N
Sbjct: 371 EAKAVMHESMLSVGCG-------PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPN 423

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +         CK+ +L EA  +L+ M  +GL      Y  L++  C   KV  A+ +F 
Sbjct: 424 VITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFG 483

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M+ KG  PD+F+++ LI G CK    EEA+ + ++M+L G            V+  T T
Sbjct: 484 DMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEG------------VIANTIT 531

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  I    + G + E ++L   +    C L    +N LI+  C+ G  E    LF  + 
Sbjct: 532 YNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMM 591

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            K L  + ++ NILI+ L + G I+     L  M   G   D+ T+N+L+
Sbjct: 592 SKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLI 641



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 156/341 (45%), Gaps = 49/341 (14%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N+LI G C +G +  A +L+ +M   GC PNV T   LI    + G +     +  EM
Sbjct: 391 TYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM 450

Query: 86  ------VNGMGD-------------------FGGIY----KPNVFCYGSLIDGLCKDRLV 116
                 +N +G                    FG +     KP++F + SLI GLCK    
Sbjct: 451 SGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF 510

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           ++   L+ +M  +G+ ANT+          ++  + EA +L+  M+ RG      TY  L
Sbjct: 511 EEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGL 570

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           +   C  G +   +ALF+ M  KG  P+  S ++LING C+  N++ A+   R+MI  G 
Sbjct: 571 IKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG- 629

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                      + P+  T N  I+GLCK G   E + LF  L++         +N+LI  
Sbjct: 630 -----------LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISW 678

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
            CK G+F+ A  L ++      + + V + IL+    KEG 
Sbjct: 679 HCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 719



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 118/265 (44%), Gaps = 27/265 (10%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
            KV  AL  FG    +  +P +  TFNSLI G C      +A  L + M   G   N  T
Sbjct: 473 EKVQDALNMFGDMSSKGCKP-DIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTIT 531

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI    R G M   LKL  +M+     F G    ++  Y  LI  LC+   +++   
Sbjct: 532 YNTLIHAFLRRGAMQEALKLVNDML-----FRGCPLDDI-TYNGLIKALCRAGNIEKGLA 585

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF +M  KG+N N +        LC+   +  A   L  M+ RGL P I TY  L+NG C
Sbjct: 586 LFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLC 645

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G+   A+ LFD +  +G  PD  +Y+ LI+ +CK    ++A  +    + +GF     
Sbjct: 646 KTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF----- 700

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNG 258
                  +P   T  I +    K G
Sbjct: 701 -------IPNEVTWYILVSNFIKEG 718



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 116/245 (47%), Gaps = 26/245 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V +N LI   C +  ++DA  +   M++ GC+P++ T ++LI GL +       L L
Sbjct: 457 LNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGL 516

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           +Q+M+       G+   N   Y +LI    +   + +   L  +M  +G     I  N L
Sbjct: 517 YQDML-----LEGVIA-NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGL 570

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC+   + +   L E MM +GLNP   +   L+NG C  G +  A+     M  +G 
Sbjct: 571 IKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL 630

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ +Y+ LING CK    +EA+N            +F+++++  + P+  T N  I  
Sbjct: 631 TPDIVTYNSLINGLCKTGRAQEALN------------LFDKLQVEGICPDAITYNTLISW 678

Query: 254 LCKNG 258
            CK G
Sbjct: 679 HCKEG 683



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 130/315 (41%), Gaps = 54/315 (17%)

Query: 91  DFGGIY--KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKK 140
           D  G+Y  +P    Y  ++D L          ++F EM  KGI+            LC  
Sbjct: 171 DMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLV 230

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            ++  A  LL+ M + G  P    Y  L++    VG+VN  + L + M   G +PDV ++
Sbjct: 231 NEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTF 290

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           +  I+G CK   + EA  +   M+L GF             P +FT  + + GLC+ G V
Sbjct: 291 NDAIHGLCKMLRIHEAAKLVDRMLLRGF------------TPNSFTYGVLMHGLCRMGKV 338

Query: 261 LEVMELFPTLEISNCELF--------------------------------VEIFNSLIRG 288
            E   L   +   N  LF                                +  +N+LI G
Sbjct: 339 DEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILG 398

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            CK G    A EL N++  K    +V+ Y ILI    KEG++++   +L  M   G AL+
Sbjct: 399 LCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALN 458

Query: 349 VDTFNTLMISFLQKE 363
              +N L+ +  + E
Sbjct: 459 AVGYNCLISALCKDE 473



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 35/195 (17%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL+D+T+N LIK  C  GNI     L + M + G  PN  +C+ LI GL RTGN+   L+
Sbjct: 561 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 620

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139
             ++M++ G+        P++  Y SLI+GLCK     +  +LF +++ +G      +C 
Sbjct: 621 FLRDMIHRGL-------TPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG------IC- 666

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
                               P   TY  L++ +C  G  + A  L       GF+P+  +
Sbjct: 667 --------------------PDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVT 706

Query: 200 YSVLINGYCKNFNVE 214
           + +L++ + K  + E
Sbjct: 707 WYILVSNFIKEGDQE 721


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 163/343 (47%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N++++  C  G ++ A +++ +M    C P+V T   LI    R   +   +KL  E
Sbjct: 205 VTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDE 264

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     D G    P+V  Y  L++G+CK+  +D+      +M   G   N +        
Sbjct: 265 MR----DRG--CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRS 318

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C   + ++A +LL  M+++G +P + T+  L+N  C  G +  AI + + M + G  P+
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPN 378

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY+ L++G+CK   ++ A+     M+  G              P+  T N  +  LCK
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMVSRG------------CYPDIVTYNTMLTALCK 426

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V + +E+   L    C   +  +N++I G  K G    A +L +++  K+L  D + 
Sbjct: 427 DGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTIT 486

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y+ L+  L +EG++ +        E  G   +  TFN++M+  
Sbjct: 487 YSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGL 529



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 154/343 (44%), Gaps = 23/343 (6%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L DV  N+ ++     G + +  + ++ M   G  P++  C TLI G  R G      K+
Sbjct: 100 LEDVESNNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKI 159

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTLL-- 137
             E++ G G       P+V  Y  +I G CK   ++    +   M +    +  NT+L  
Sbjct: 160 -LEVLEGSGAV-----PDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRS 213

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C   KL +A  +L+ M+QR   P + TYT L+   C    V  A+ L D M  +G  PD
Sbjct: 214 LCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPD 273

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+VL+NG CK   ++EA+            K  N+M      P   T NI +  +C 
Sbjct: 274 VVTYNVLVNGICKEGRLDEAI------------KFLNDMPSSGCQPNVITHNIILRSMCS 321

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G  ++  +L   +        V  FN LI   C+ G+   A ++  K+       + ++
Sbjct: 322 TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLS 381

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           YN L+H   KE ++ +    L  M   GC  D+ T+NT++ + 
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 164/354 (46%), Gaps = 41/354 (11%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R CY  +  +T+  LI+  C +  +  A +L+ +M   GC P+V T + L+ G+ + G +
Sbjct: 233 RDCYPDV--ITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINAN 134
           +  +K     +N M   G   +PNV  +  ++  +C   R +D  K L  +M  KG + +
Sbjct: 291 DEAIKF----LNDMPSSG--CQPNVITHNIILRSMCSTGRWMDAEK-LLADMLRKGFSPS 343

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +        LC+K  L  A  +LE M + G  P   +Y PLL+G+C   K++ AI   +
Sbjct: 344 VVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFK--- 229
            M  +G  PD+ +Y+ ++   CK+  VE+A+ +  ++              +++G     
Sbjct: 404 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

Query: 230 ------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                 K+ +EM+  ++ P+T T +  + GL + G V E ++ F   E          FN
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFN 523

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
           S++ G CK    + A +    +  +       +Y ILI  L  EG  K+   LL
Sbjct: 524 SIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELL 577



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 140/332 (42%), Gaps = 49/332 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N L+ G C EG + +A + +  M + GC+PNV T + ++  +  TG      KL  +
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLAD 334

Query: 85  MVNG------------------MGDFGGIY-----------KPNVFCYGSLIDGLCKDRL 115
           M+                     G  G              +PN   Y  L+ G CK++ 
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKK 394

Query: 116 VDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           +D+  +    M  +G     +  NT+L   CK  K+ +A  +L  +  +G +PV+ TY  
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +++G    GK   AI L D M  K   PD  +YS L+ G  +   V+EA+          
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI---------- 504

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
             K F+E +   V P   T N  + GLCK       ++    +    C+     +  LI 
Sbjct: 505 --KFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIE 562

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           G    G+ + A EL N+L  K L+    A  +
Sbjct: 563 GLAYEGMAKEALELLNELCNKGLMKRSSAEQV 594



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 50/273 (18%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T + + A       +R+ + P + VTFN LI   C +G +  A  +++KM   GC+PN  
Sbjct: 322 TGRWMDAEKLLADMLRKGFSP-SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSL 380

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           + + L+ G  +   M+  ++  + MV+      G Y P++  Y +++  LCKD  V+   
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSR-----GCY-PDIVTYNTMLTALCKDGKVEDAV 434

Query: 121 DLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           ++  ++  KG     I  NT+   L K  K  +A +LL+ M  + L P   TY+ L+ G 
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGL 494

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVF---------------------------------- 198
              GKV+ AI  F    R G  P+                                    
Sbjct: 495 SREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTE 554

Query: 199 -SYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
            SY++LI G       +EA+ +  E+   G  K
Sbjct: 555 TSYTILIEGLAYEGMAKEALELLNELCNKGLMK 587


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 180/373 (48%), Gaps = 40/373 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKK-MATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           N V FN+LI G+   G + +A  ++ + M + GC P++ T +TLI GL + G +    +L
Sbjct: 370 NVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSAREL 429

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
             EM + G        +PNV  Y  LID  CK+  +++ +++  EM  KG+  N +    
Sbjct: 430 MNEMQIKGC-------EPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNC 482

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  K+ +A  +   M  +G  P IFT+  L+ G C V K   A+ L+  M  +G
Sbjct: 483 LISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEG 542

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL----------NGFKK------------ 230
            + +  +Y+ LI+ + +   ++EA+ +  +M+           NG  K            
Sbjct: 543 VIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGL 602

Query: 231 -IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            +F +M    + P   +CNI I+GLC+ G++   +E    +        +  +NSLI G 
Sbjct: 603 ALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGL 662

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G  + A  LF+KL  + +  D + YN LI    KEG     + LL    ++G   + 
Sbjct: 663 CKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNE 722

Query: 350 DTFNTLMISFLQK 362
            T+  L+ +F+++
Sbjct: 723 VTWYILVSNFIKE 735



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 171/367 (46%), Gaps = 50/367 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT------- 78
           TF  ++K  C+   +  A  L+K M   GC PN     TLI  L + G +N         
Sbjct: 237 TFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEM 296

Query: 79  ----------------------LKLHQ--EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR 114
                                 L++H+  ++V+ M   G  + PN F YG L+ GLC+  
Sbjct: 297 LLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRG--FTPNSFTYGVLMHGLCRMG 354

Query: 115 LVDQTKDLFMEMKDKGINA-NTLL---CKKTKLVEANRLL-ELMMQRGLNPVIFTYTPLL 169
            VD+ + L  ++ +  +   NTL+     + +L EA  ++ E M+  G  P IFTY  L+
Sbjct: 355 KVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLI 414

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
            G C  G +  A  L + M  KG  P+V +Y++LI+ +CK   +EEA NV  EM   G  
Sbjct: 415 LGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLA 474

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                    N V      N  I  LCK+  V + + +F  +    C+  +  FNSLI G 
Sbjct: 475 --------LNAV----GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGL 522

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK   FE A  L+  +  + ++A+ + YN LIHA  + G +++   L+  M   GC LD 
Sbjct: 523 CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDD 582

Query: 350 DTFNTLM 356
            T+N L+
Sbjct: 583 ITYNGLI 589



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 166/350 (47%), Gaps = 34/350 (9%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R + P N  T+  L+ G C  G + +A  L+ K+      PNV   +TLI G    G ++
Sbjct: 334 RGFTP-NSFTYGVLMHGLCRMGKVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLD 388

Query: 77  -LTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
                +H+ M++ G G       P++F Y +LI GLCK   +   ++L  EM+ KG   N
Sbjct: 389 EAKAVMHESMLSVGCG-------PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPN 441

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +         CK+ +L EA  +L+ M  +GL      Y  L++  C   KV  A+ +F 
Sbjct: 442 VITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFG 501

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M+ KG  PD+F+++ LI G CK    EEA+ + ++M+L G            V+  T T
Sbjct: 502 DMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEG------------VIANTIT 549

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  I    + G + E ++L   +    C L    +N LI+  C+ G  E    LF  + 
Sbjct: 550 YNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMM 609

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            K L  + ++ NILI+ L + G I+     L  M   G   D+ T+N+L+
Sbjct: 610 SKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLI 659



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 156/341 (45%), Gaps = 49/341 (14%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N+LI G C +G +  A +L+ +M   GC PNV T   LI    + G +     +  EM
Sbjct: 409 TYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM 468

Query: 86  ------VNGMGD-------------------FGGIY----KPNVFCYGSLIDGLCKDRLV 116
                 +N +G                    FG +     KP++F + SLI GLCK    
Sbjct: 469 SGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF 528

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           ++   L+ +M  +G+ ANT+          ++  + EA +L+  M+ RG      TY  L
Sbjct: 529 EEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGL 588

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           +   C  G +   +ALF+ M  KG  P+  S ++LING C+  N++ A+   R+MI  G 
Sbjct: 589 IKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG- 647

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                      + P+  T N  I+GLCK G   E + LF  L++         +N+LI  
Sbjct: 648 -----------LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISW 696

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
            CK G+F+ A  L ++      + + V + IL+    KEG 
Sbjct: 697 HCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 737



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 118/265 (44%), Gaps = 27/265 (10%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
            KV  AL  FG    +  +P +  TFNSLI G C      +A  L + M   G   N  T
Sbjct: 491 EKVQDALNMFGDMSSKGCKP-DIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTIT 549

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI    R G M   LKL  +M+     F G    ++  Y  LI  LC+   +++   
Sbjct: 550 YNTLIHAFLRRGAMQEALKLVNDML-----FRGCPLDDI-TYNGLIKALCRAGNIEKGLA 603

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF +M  KG+N N +        LC+   +  A   L  M+ RGL P I TY  L+NG C
Sbjct: 604 LFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLC 663

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G+   A+ LFD +  +G  PD  +Y+ LI+ +CK    ++A  +    + +GF     
Sbjct: 664 KTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF----- 718

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNG 258
                  +P   T  I +    K G
Sbjct: 719 -------IPNEVTWYILVSNFIKEG 736



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 116/245 (47%), Gaps = 26/245 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V +N LI   C +  ++DA  +   M++ GC+P++ T ++LI GL +       L L
Sbjct: 475 LNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGL 534

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           +Q+M+       G+   N   Y +LI    +   + +   L  +M  +G     I  N L
Sbjct: 535 YQDML-----LEGVIA-NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGL 588

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC+   + +   L E MM +GLNP   +   L+NG C  G +  A+     M  +G 
Sbjct: 589 IKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL 648

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ +Y+ LING CK    +EA+N            +F+++++  + P+  T N  I  
Sbjct: 649 TPDIVTYNSLINGLCKTGRAQEALN------------LFDKLQVEGICPDAITYNTLISW 696

Query: 254 LCKNG 258
            CK G
Sbjct: 697 HCKEG 701



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 130/315 (41%), Gaps = 54/315 (17%)

Query: 91  DFGGIY--KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKK 140
           D  G+Y  +P    Y  ++D L          ++F EM  KGI+            LC  
Sbjct: 189 DMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLV 248

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            ++  A  LL+ M + G  P    Y  L++    VG+VN  + L + M   G +PDV ++
Sbjct: 249 NEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTF 308

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           +  I+G CK   + EA  +   M+L GF             P +FT  + + GLC+ G V
Sbjct: 309 NDAIHGLCKMLRIHEAAKLVDRMLLRGF------------TPNSFTYGVLMHGLCRMGKV 356

Query: 261 LEVMELFPTLEISNCELF--------------------------------VEIFNSLIRG 288
            E   L   +   N  LF                                +  +N+LI G
Sbjct: 357 DEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILG 416

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            CK G    A EL N++  K    +V+ Y ILI    KEG++++   +L  M   G AL+
Sbjct: 417 LCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALN 476

Query: 349 VDTFNTLMISFLQKE 363
              +N L+ +  + E
Sbjct: 477 AVGYNCLISALCKDE 491



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 35/195 (17%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL+D+T+N LIK  C  GNI     L + M + G  PN  +C+ LI GL RTGN+   L+
Sbjct: 579 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 638

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139
             ++M++ G+        P++  Y SLI+GLCK     +  +LF +++ +G      +C 
Sbjct: 639 FLRDMIHRGL-------TPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG------IC- 684

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
                               P   TY  L++ +C  G  + A  L       GF+P+  +
Sbjct: 685 --------------------PDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVT 724

Query: 200 YSVLINGYCKNFNVE 214
           + +L++ + K  + E
Sbjct: 725 WYILVSNFIKEGDQE 739


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 160/369 (43%), Gaps = 62/369 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ S++ G C +G +  A ++V++M   G  P+  T   LITG      ++  LKL++E
Sbjct: 114 VTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKE 173

Query: 85  ----------------MVNGMGDFGGIYK--------------PNVFCYGSLIDGLCKDR 114
                           +++G    G + K              PNV  Y SL+ GLCK  
Sbjct: 174 ILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAG 233

Query: 115 LVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
            +DQ  DLF  M  KG   N +        LC   K+  A  L++ M      P   +Y 
Sbjct: 234 DLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYN 293

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM--------- 217
            LL+GYC +G++  A  LF  MA K  +PD  +Y+ L+ G+C    +EEA          
Sbjct: 294 ALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTA 353

Query: 218 ------NVSREMILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
                  V+  +++ G+ +            EM   NV P   T +  IDGLCK G V  
Sbjct: 354 AGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDH 413

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            ME+   +     E  V  FNS+I   C+ G  + A +L   ++   L   +V Y  L+ 
Sbjct: 414 AMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLE 473

Query: 323 ALGKEGQIK 331
              + G+++
Sbjct: 474 GFSRTGRME 482



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 151/315 (47%), Gaps = 28/315 (8%)

Query: 55  CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR 114
           C+P V T   +I G  +   +   L   ++M            PN   Y  +++GLCK R
Sbjct: 3   CQPTVVTWTIIIDGFCKANQLKQALACFEKMRE-------FVAPNERTYNVVVNGLCKAR 55

Query: 115 LVDQTKDLFMEMKDKGINANTLL---------CKKTKLVEANRLLELMMQR-GLNPVIFT 164
           L  +  ++  EM+D    A  L+         CK+ ++  A  +L  M+ R G+ P + T
Sbjct: 56  LTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVT 115

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           YT +++G C  GK++ A  +   M  KG  PD F++S LI G+C    V+EA+ + +E++
Sbjct: 116 YTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEIL 175

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
            +   K           P+  T    IDG CK+G++ + M++   +E   C   V  ++S
Sbjct: 176 TSSSWK-----------PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSS 224

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           L+ G CK G  + A +LF +++ K  V +VV Y  LIH L    ++     L+  M    
Sbjct: 225 LLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC 284

Query: 345 CALDVDTFNTLMISF 359
           C  D  ++N L+  +
Sbjct: 285 CPPDTVSYNALLDGY 299



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 167/343 (48%), Gaps = 29/343 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           VT++++I GFC +G +  A +++++M T  G  P+V T  +++ GL R G M+   ++ +
Sbjct: 78  VTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVR 137

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM------KDKGINANTLL 137
           EM        G+ +P+ F + +LI G C  R VD+   L+ E+      K   +    L+
Sbjct: 138 EM-----KLKGV-EPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALI 191

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   L +A ++L +M  R   P + TY+ LL+G C  G ++ A+ LF  M  KG +
Sbjct: 192 DGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCV 251

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V +Y+ LI+G C    V+ A            + + +EM      P+T + N  +DG 
Sbjct: 252 PNVVTYTTLIHGLCAAHKVDAA------------RLLMDEMTATCCPPDTVSYNALLDGY 299

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF-NKLSCKNLVAD 313
           C+ G + E  +LF  +   +C      +  L+RG C     E A  L  N  +   +  D
Sbjct: 300 CRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPD 359

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           VV Y+I++    +  +  +    +  M     A +  T+++L+
Sbjct: 360 VVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLI 402



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 152/347 (43%), Gaps = 38/347 (10%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R+C    N VT++SL+ G C  G++  A  L ++M + GC PNV T  TLI GL     +
Sbjct: 213 RKCVP--NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKV 270

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           +    L  EM            P+   Y +L+DG C+   +++ K LF EM  K    + 
Sbjct: 271 DAARLLMDEMT------ATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDR 324

Query: 136 L--------LCKKTKLVEANRLLELM-MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           +         C  ++L EA  LLE M    G++P + TY+ ++ GY    +   A     
Sbjct: 325 ITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQ 384

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M  +   P+  +YS LI+G CK   V+ AM V + M+               V P   T
Sbjct: 385 EMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNK------------RVEPSVGT 432

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  I  LC+ G + E  +L   +     E  +  + +L+ G  + G  EIA ELF  + 
Sbjct: 433 FNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMR 492

Query: 307 --------CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
                     NLV +  A++ LI  L K  +I K   ++  +    C
Sbjct: 493 KKAKKSSSAANLVPE-QAFSALIRGLCKAREIDKAMAVVEELRSREC 538



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 131/294 (44%), Gaps = 18/294 (6%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++N+L+ G+C  G I +A QL K+MAT  C P+  T   L+ G      +     
Sbjct: 286 PPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARF 345

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L + M    G       P+V  Y  ++ G  + +   +  +   EM  + +  N +    
Sbjct: 346 LLENMKTAAG-----IDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSS 400

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  ++  A  +L+ M+ + + P + T+  ++   C +G ++ A  L  +MA  G
Sbjct: 401 LIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHG 460

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P + +Y+ L+ G+ +       M ++ E+     KK        N+VPE    +  I 
Sbjct: 461 LEPGMVTYTTLLEGFSRTGR----MEIAYELFEVMRKKAKKSSSAANLVPEQ-AFSALIR 515

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
           GLCK   + + M +   L    CE   E   +++ G  + G  E A +L N +S
Sbjct: 516 GLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSIS 569


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 164/342 (47%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI GF  EGN  +A +++K+M   G +PN  T D L+ GL + G M+    L 
Sbjct: 348 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 407

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MV         ++P+   Y  +I+G  +         L  EM++ GI+ N        
Sbjct: 408 KQMVRDS------HRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMI 461

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +  +A+ LLE M  +GL P  F Y PL++GYC  G V++A  +FD M +   +
Sbjct: 462 HGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVL 521

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD++ Y+ LI G  K   VEE+             K F +M+   ++P  FT +  I G 
Sbjct: 522 PDLYCYNSLIFGLSKVGRVEES------------TKYFAQMQERGLLPNEFTYSGLIHGY 569

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            KNG +    +L   +  +  +    I+  L+    K    E  S  F  +  + ++ D 
Sbjct: 570 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 629

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             Y ILIH L   G ++    +L  +E+NG   DV  +++L+
Sbjct: 630 RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLI 671



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 173/344 (50%), Gaps = 26/344 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+++LI+ +C       A +++ +M   GC  N  T + LI GL R+G +       ++M
Sbjct: 246 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 305

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
                D+G +  P+ F YG+LI+GLCK R  ++ K L  EM    +  N ++        
Sbjct: 306 ----EDYGLV--PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 359

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            ++    EA ++++ M+  G+ P   TY  L+ G C +G+++ A  L   M R    PD 
Sbjct: 360 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDT 419

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+++I G+ ++ + ++A             ++ +EM+   + P  +T +I I GLC++
Sbjct: 420 ITYNLIIEGHFRHHSKKDAF------------RLLSEMENAGISPNVYTYSIMIHGLCQS 467

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G   +  +L   +     +    ++  LI G C+ G   +A E+F+K++  N++ D+  Y
Sbjct: 468 GEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCY 527

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           N LI  L K G++++       M+E G   +  T++ L+  +L+
Sbjct: 528 NSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 571



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 156/350 (44%), Gaps = 26/350 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN VT+N LI G C  G + +A    K M  +G  P+  T   LI GL ++   N    L
Sbjct: 277 LNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKAL 336

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EM           KPNV  Y +LIDG  ++   D+   +  EM   G+  N +     
Sbjct: 337 LDEMSCAE------LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNL 390

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++  A+ LL+ M++    P   TY  ++ G+        A  L   M   G 
Sbjct: 391 VRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGI 450

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V++YS++I+G C++   E+A ++  EM   G K            P  F     I G
Sbjct: 451 SPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK------------PNAFVYAPLISG 498

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C+ G+V    E+F  +   N    +  +NSLI G  K G  E +++ F ++  + L+ +
Sbjct: 499 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 558

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              Y+ LIH   K G ++    L+  M + G   +   +  L+ S+ + +
Sbjct: 559 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSD 608



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 151/343 (44%), Gaps = 30/343 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T++ +I G C  G    AS L+++M T G +PN      LI+G  R GN++L  ++ 
Sbjct: 453 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF 512

Query: 83  QEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            +M  VN +        P+++CY SLI GL K   V+++   F +M+++G+  N      
Sbjct: 513 DKMTKVNVL--------PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSG 564

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K   L  A +L++ M+  GL P    Y  LL  Y     +    + F SM  +G
Sbjct: 565 LIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQG 624

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
            M D   Y +LI+    + N+E A  V     L+G +K          VP+    +  I 
Sbjct: 625 VMLDNRIYGILIHNLSSSGNMEAAFRV-----LSGIEK-------NGSVPDVHVYSSLIS 672

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK     +   +   +     +  +  +N+LI G CK G    A  +FN +  K LV 
Sbjct: 673 GLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVP 732

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + V Y  LI    K G I    YL   M   G   D   ++ L
Sbjct: 733 NCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 775



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 174/417 (41%), Gaps = 90/417 (21%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-VTTCD------ 63
           F     R   P N+ T++ LI G+   G++  A QLV++M   G +PN V   D      
Sbjct: 547 FAQMQERGLLP-NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF 605

Query: 64  ----------------------------TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI 95
                                        LI  L  +GNM    ++    ++G+   G +
Sbjct: 606 KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV----LSGIEKNGSV 661

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
             P+V  Y SLI GLCK    ++   +  EM  KG++ N +        LCK   +  A 
Sbjct: 662 --PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 719

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +   ++ +GL P   TYT L++G C VG ++ A  L++ M   G  PD F YSVL  G 
Sbjct: 720 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 779

Query: 208 CKNFNVEEAMNVSREMILNGFKKI--FNE--------------MKLCNV------VPETF 245
               ++E+AM +  EM L G   I  FN               +KL +V      VP   
Sbjct: 780 SSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNAL 839

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCE--------LFVEIFNS----------LIR 287
           T    I GL + G + EV  +F  L+    E        LF+++ N           +IR
Sbjct: 840 TIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIR 899

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             CK G  + A  L + +  K+      +Y  ++  L ++G++ +   LL  M++ G
Sbjct: 900 DHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 956



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 127/287 (44%), Gaps = 31/287 (10%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK--TKLVEAN------RLLELMMQRG 157
           L+D   K   V    ++ + M+D+G+  +   C      L+ A+      ++ E M+  G
Sbjct: 180 LVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAG 239

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           ++P ++TY+ L+  YC V + + A  +   M  +G   +  +Y+VLI G C++  VEEA 
Sbjct: 240 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 299

Query: 218 NVSREM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGL 254
              ++M              ++NG          K + +EM    + P        IDG 
Sbjct: 300 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 359

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            + G+  E  ++   +  +  +     +++L+RG CK G  + AS L  ++   +   D 
Sbjct: 360 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDT 419

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           + YN++I    +    K    LL  ME  G + +V T++ ++    Q
Sbjct: 420 ITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQ 466



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 97/214 (45%), Gaps = 17/214 (7%)

Query: 26   TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            +FN+L+ GFC  G +++  +L+  +   G  PN  T + +I+GL   G ++    +  E+
Sbjct: 805  SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVEL 864

Query: 86   VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
                 +    +  ++F             +++Q K + +++ D  I  +   CK+  L +
Sbjct: 865  QQKTSESAARHFSSLFM-----------DMINQGK-IPLDVVDDMIRDH---CKEGNLDK 909

Query: 146  ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
            A  L ++++ +       +Y  +++  C  GK++ A+ L   M ++G  P      +L+ 
Sbjct: 910  ALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLT 969

Query: 206  GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
                +  ++E   V   M+ +  K +  + K CN
Sbjct: 970  NLHTSGYIQEHNTVLDNMLCH--KWLQKDSKFCN 1001


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 176/375 (46%), Gaps = 49/375 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN----L 77
           LN  T+ +LI G C  G++  A  L  +M   G +P++ T + LI G  +  NM     L
Sbjct: 370 LNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYEL 429

Query: 78  TLKLHQE-----------MVNGMGDFGGI--------------YKPNVFCYGSLIDGLCK 112
            +++ +E           +VNG+   G +               KPN+  Y +++ GL K
Sbjct: 430 LIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVK 489

Query: 113 DRLVDQTKDLFMEMKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFT 164
           +   ++   +   MKD+G++      NT++   CK  K+ E    L  M+ +GL P ++T
Sbjct: 490 EGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYT 549

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y   ++GYC  G++  A   F  M   G  P+    + LI+GYCK+ N  +A    R M+
Sbjct: 550 YGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCML 609

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
             G            V+P+  T ++ I GL KNG + E M +F  L        V  + S
Sbjct: 610 DQG------------VLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTS 657

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI   CK G  + A EL + +  K +  ++V YN LI+ L K G+I K   L   + E G
Sbjct: 658 LISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKG 717

Query: 345 CALDVDTFNTLMISF 359
            A +  T++T++  +
Sbjct: 718 LARNSVTYSTIIAGY 732



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 167/353 (47%), Gaps = 28/353 (7%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I +  +P N  T+ + I G+C  G ++ A +   +M   G  PN   C  LI G  + GN
Sbjct: 539 IAKGLKP-NVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGN 597

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
                   + M+    D G +  P+V  +  LI GL K+  + +   +F E+ DKG+  +
Sbjct: 598 TTKAFAKFRCML----DQGVL--PDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPD 651

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                     LCK+  L  A  L + M ++G+NP I TY  L+NG C +G++  A  LFD
Sbjct: 652 VFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFD 711

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            +  KG   +  +YS +I GYCK+ N+ EA             ++F+ MKL  V P++F 
Sbjct: 712 GIPEKGLARNSVTYSTIIAGYCKSANLTEAF------------QLFHGMKLVGVPPDSFV 759

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
               IDG CK G+  + + LF  + +         FN+LI G  K G    A +L   + 
Sbjct: 760 YCALIDGCCKAGNTEKALSLFLGM-VEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMV 818

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             ++  + V Y ILI      G IK+   L + M++     +V T+ +L+  +
Sbjct: 819 DNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGY 871



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 162/365 (44%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V + +LI GF  + +I  A Q+ ++M     + N  T   LI GL + G++     L 
Sbjct: 336 DHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLF 395

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT- 141
            EM   MG      KP++  Y  LI+G  K + +++  +L +E+K + + AN  +C    
Sbjct: 396 SEMTM-MG-----IKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIV 449

Query: 142 -------KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
                   L  AN L + M+  GL P I  YT ++ G    G+   AI +   M  +G  
Sbjct: 450 NGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLS 509

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PDVF Y+ +I G+CK   +EE  +   EMI  G K                       + 
Sbjct: 510 PDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERS 569

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F EM    + P    C   IDG CK+G+  +    F  +        V+  + LI G  K
Sbjct: 570 FIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSK 629

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  + A  +F++L  K LV DV  Y  LI  L KEG +K    L   M + G   ++ T
Sbjct: 630 NGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVT 689

Query: 352 FNTLM 356
           +N L+
Sbjct: 690 YNALI 694



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 155/344 (45%), Gaps = 60/344 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI G C  G I  A +L   +   G   N  T  T+I G  ++ N+    +L 
Sbjct: 686 NIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQL- 744

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA----NTLL- 137
               +GM   G    P+ F Y +LIDG CK    ++   LF+ M ++GI +    N L+ 
Sbjct: 745 ---FHGMKLVG--VPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALID 799

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
              K  KL+EA +L+E M+   + P   TYT L+  +C VG +  A  LF  M ++  MP
Sbjct: 800 GFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMP 859

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           +V +Y+ L++GY +     E  ++  EM+  G K            P+    ++ +D   
Sbjct: 860 NVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIK------------PDDLAWSVMVDAHL 907

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G+ ++ ++L                           + ++ SE  N   CKNL     
Sbjct: 908 KEGNWIKALKL---------------------------VDDMLSEGVN--VCKNL----- 933

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            Y ILI AL K   + +   +L  +E+ G  L + T  TL+  F
Sbjct: 934 -YTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCF 976



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 172/410 (41%), Gaps = 99/410 (24%)

Query: 15  IRRCYRPLNDVT-------FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           I +CY+ +N  +       F  LI  +  +G + +A  +     T      +  C++L  
Sbjct: 147 IIKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSK 206

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
            L +   + L  K+++ M+       G   P+V+ Y +LI+  C+   V++ K +  +M+
Sbjct: 207 DLLKGNRVELFWKVYKGML-------GAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDME 259

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +KG                             P + TY+ ++ G C  G V+ A+ L  S
Sbjct: 260 EKGCI---------------------------PNLVTYSVVIAGLCRAGDVDEALELKRS 292

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK--- 230
           MA KG +PD + Y+ LI+G+C+     E  ++  EM              ++NGF K   
Sbjct: 293 MANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSD 352

Query: 231 ------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF---------PTLEISNC 275
                 +  EM    +   TFT    I GLCK G + +  +LF         P ++  NC
Sbjct: 353 IGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNC 412

Query: 276 ---------------ELFVEIFN-----------SLIRGCCKFGIFEIASELFNKLSCKN 309
                          EL +EI             +++ G C  G    A+ELF ++    
Sbjct: 413 LIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWG 472

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L  ++V Y  ++  L KEG+ ++   +L  M++ G + DV  +NT++I F
Sbjct: 473 LKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGF 522



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 48/270 (17%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +   + +LI G C  GN   A  L   M   G   +    + LI G  + G +    +
Sbjct: 754 PPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDGFFKLGKLIEAYQ 812

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           L ++MV+          PN   Y  LI+  C    + + + LFMEM+             
Sbjct: 813 LVEDMVDNH------ITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQ------------- 853

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                         +R + P + TYT LL+GY  +G+ +   +LFD M  +G  PD  ++
Sbjct: 854 --------------KRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAW 899

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           SV+++ + K  N  +A+ +  +M+  G           NV    +T  I ID LCK+ ++
Sbjct: 900 SVMVDAHLKEGNWIKALKLVDDMLSEGV----------NVCKNLYT--ILIDALCKHNNL 947

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCC 290
            EV+++   +E    +L +    +L+  CC
Sbjct: 948 SEVLKVLDEVEKQGSKLSLATCGTLV--CC 975


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 164/344 (47%), Gaps = 28/344 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N V++ ++I GF  E    +A  L  +M   G  P++ T + LI  L + GN+  + KL
Sbjct: 179 FNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKL 238

Query: 82  HQE-MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
             + M  G+        PN+F +   I GLC+   +D+   L   +  +G     I+ NT
Sbjct: 239 FSKVMKRGVC-------PNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNT 291

Query: 136 LLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+C   K +KLVEA   L  M+  G+ P  FTY  ++NG+C  G +  A  +      KG
Sbjct: 292 LICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKG 351

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F+PD F+YS LING C + ++  AM V  E +  GFK                  N  + 
Sbjct: 352 FIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKH------------SIILYNTLVK 399

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GL K G VL+ ++L   +    C   +  +N ++ G CK G    A+ + N    K  + 
Sbjct: 400 GLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIP 459

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D+  +N LI    K+  + K   +L +M  +G   DV T+NTL+
Sbjct: 460 DIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLL 503



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 186/367 (50%), Gaps = 38/367 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +++N+LI GFC    + +A   + KM   G  PN  T +T+I G  + G M    K+ ++
Sbjct: 287 ISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRD 346

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
            +     F G + P+ F Y SLI+GLC D  +++   +F E  +KG     I  NTL   
Sbjct: 347 AM-----FKG-FIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKG 400

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K+  +++A +L++ MM+ G +P I+TY  ++NG C +G ++ A  + +    KG +PD
Sbjct: 401 LSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPD 460

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNG-------FKKIFNEM----KLCNVV---- 241
           +F+++ LI+GYCK  N+++A+ +   M+ +G       +  + N +    KL NVV    
Sbjct: 461 IFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFK 520

Query: 242 --------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P   T NI I+  CK+  V E MELF  ++       +    +LI G C  G
Sbjct: 521 AMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNG 580

Query: 294 IFEIASELFNKLSCKNLVADVVA-YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             + A ELF  +  +   +   A +NI+I+A  ++  +     L   M  + CA D  T+
Sbjct: 581 ELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTY 640

Query: 353 NTLMISF 359
             ++ S+
Sbjct: 641 RVMIDSY 647



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 173/376 (46%), Gaps = 35/376 (9%)

Query: 4   VLGALMAFGSF--IRRCYRPLNDV-------TFNSLIKGFCMEGNIRDASQLVKKMATFG 54
           ++  L+ +G F    + Y  + D+       T    +K FC+ G    A +L+  M   G
Sbjct: 117 IMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQG 176

Query: 55  CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR 114
           C  N  +   +I+G  +         L  EM+       GI  P++  +  LI  LCK  
Sbjct: 177 CEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQ-----GIC-PDILTFNKLIHVLCKKG 230

Query: 115 LVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
            V +++ LF ++  +G+  N          LC+K  + EA RLLE ++  GL P + +Y 
Sbjct: 231 NVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYN 290

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            L+ G+C   K+  A      M   G  P+ F+Y+ +ING+CK   ++ A  + R+ +  
Sbjct: 291 TLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFK 350

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
           GF            +P+ FT +  I+GLC +G +   M +F        +  + ++N+L+
Sbjct: 351 GF------------IPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLV 398

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
           +G  K G+   A +L   +       D+  YN++++ L K G +   N +L      GC 
Sbjct: 399 KGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCI 458

Query: 347 LDVDTFNTLMISFLQK 362
            D+ TFNTL+  + ++
Sbjct: 459 PDIFTFNTLIDGYCKQ 474



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 164/355 (46%), Gaps = 50/355 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK-- 80
           N+ T+N++I GFC  G +++A ++++     G  P+  T  +LI GL   G+MN  +   
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVF 379

Query: 81  -------------LHQEMVNGMGDFGGIYK--------------PNVFCYGSLIDGLCKD 113
                        L+  +V G+   G + +              P+++ Y  +++GLCK 
Sbjct: 380 YEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKM 439

Query: 114 RLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTY 165
             +     +  +   KG        NTL+   CK+  + +A  +L+ M+  G+ P + TY
Sbjct: 440 GCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITY 499

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             LLNG C   K++  +  F +M  KG  P++ +Y++LI  +CK+  V EAM        
Sbjct: 500 NTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAM-------- 551

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-NCELFVEIFNS 284
               ++F EMK   + P+  T    I GLC NG + +  ELF T+E          IFN 
Sbjct: 552 ----ELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNI 607

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
           +I   C+     +A +LF+K+   +   D   Y ++I +  K G I   +  LL 
Sbjct: 608 MINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLE 662



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 170/363 (46%), Gaps = 37/363 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN LI   C +GN++++ +L  K+   G  PN+ T +  I GL R G ++   +L + 
Sbjct: 217 LTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLES 276

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +V+      G+  P+V  Y +LI G CK   + + +    +M + G+  N          
Sbjct: 277 IVSE-----GL-TPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   +  A+++L   M +G  P  FTY+ L+NG C  G +N A+A+F     KGF   
Sbjct: 331 FCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHS 390

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFN 233
           +  Y+ L+ G  K   V +A+ + ++M              ++NG  K         I N
Sbjct: 391 IILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILN 450

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +      +P+ FT N  IDG CK  ++ + +E+  T+        V  +N+L+ G CK  
Sbjct: 451 DAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKAR 510

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             +   + F  +  K    +++ YNILI +  K+ ++ +   L   M+  G   D+ T  
Sbjct: 511 KLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLC 570

Query: 354 TLM 356
           TL+
Sbjct: 571 TLI 573



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 136/296 (45%), Gaps = 25/296 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           + +N+L+KG   +G +  A QL+K M   GC P++ T + ++ GL + G     L     
Sbjct: 392 ILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMG----CLSDANG 447

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL-- 137
           ++N     G I  P++F + +LIDG CK R +D+  ++   M   GI       NTLL  
Sbjct: 448 ILNDAIAKGCI--PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNG 505

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK  KL       + M+++G  P I TY  L+  +C   KV+ A+ LF  M  +G  PD
Sbjct: 506 LCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPD 565

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +   LI G C N  +++A  +        F  I  E K       T   NI I+  C+
Sbjct: 566 IVTLCTLICGLCSNGELDKAYEL--------FVTIEKEYKFSY---STAIFNIMINAFCE 614

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
             +V    +LF  +  S+C      +  +I   CK G  ++A     +   K LV 
Sbjct: 615 KLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVP 670



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 66/287 (22%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL---RRTGNMNLTLKLH 82
           TFN+LI G+C + N+  A +++  M + G  P+V T +TL+ GL   R+  N+  T K  
Sbjct: 463 TFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFK-- 520

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
                 M + G    PN+  Y  LI+  CKDR V +  +LF EMK +G+  + +      
Sbjct: 521 -----AMLEKGCT--PNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLI 573

Query: 137 --------------------------------------LCKKTKLVEANRLLELMMQRGL 158
                                                  C+K  +  A +L   M     
Sbjct: 574 CGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDC 633

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P  +TY  +++ YC  G +++A         KG +P   +   ++N  C    + EA+ 
Sbjct: 634 APDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVV 693

Query: 219 VSREMILNGF-----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           +   M+ NG        IF   K     P+     I ++ L K  H+
Sbjct: 694 IINLMVQNGIVPEEVNSIFEADKKEVAAPK-----IVVEYLLKKSHI 735



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 23/244 (9%)

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +K K+ EA  + E M      P + +Y  ++N     G  + A  ++  M   G  PDV+
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVY 147

Query: 199 SYSVLINGYCKNFNVEEAMN--------------VSREMILNGFKK---------IFNEM 235
           ++++ +  +C       A+               VS   +++GF K         +F+EM
Sbjct: 148 THTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEM 207

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               + P+  T N  I  LCK G+V E  +LF  +        +  FN  I+G C+ G  
Sbjct: 208 LKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAI 267

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + A+ L   +  + L  DV++YN LI    K  ++ +    L  M  +G   +  T+NT+
Sbjct: 268 DEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTI 327

Query: 356 MISF 359
           +  F
Sbjct: 328 INGF 331



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 12/198 (6%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  ++  Y   GKV  A+ +F+ M      P V SY+ ++N   +     +A        
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQA-------- 130

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                K++  MK   + P+ +T  I +   C  G     + L   +    CE     + +
Sbjct: 131 ----HKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCA 186

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +I G  K      A  LF+++  + +  D++ +N LIH L K+G +++   L   + + G
Sbjct: 187 VISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRG 246

Query: 345 CALDVDTFNTLMISFLQK 362
              ++ TFN  +    +K
Sbjct: 247 VCPNLFTFNIFIQGLCRK 264


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 178/368 (48%), Gaps = 38/368 (10%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N  T+   I+    +G I +A +++K+M   GC P+V T   LI  L     ++  +
Sbjct: 261 RP-NIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAM 319

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            L  +M +        +KP+   Y +L+D       +D+ + ++ EM+  G   + +   
Sbjct: 320 CLFTKMKSSS------HKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFT 373

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  ++ EA  LL+ M ++G+ P + TY  L++G     +++ A+ LF +M   
Sbjct: 374 ILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESL 433

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------------------- 228
           G  P  ++Y +LI+ + K+ +  +A+    +M   G                        
Sbjct: 434 GVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEA 493

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           K +FNE+K   + P++ T N+ +    K G V E ++L   +    CE  V + NSLI  
Sbjct: 494 KAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDT 553

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K G  E A ++F ++   NL   VV YNIL+  LGKEGQI+K   L  SM  +GC+ +
Sbjct: 554 LYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPN 613

Query: 349 VDTFNTLM 356
             TFNTL+
Sbjct: 614 TITFNTLL 621



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 154/332 (46%), Gaps = 27/332 (8%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P + VTF  L+   C  G I +A  L+  M   G  PN+ T +TLI+GL R   ++  
Sbjct: 365 YAP-DVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDA 423

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138
           L L   M   +G      +P  + Y  LID   K     +  + F +MK +GI  N + C
Sbjct: 424 LDLFSNM-ESLG-----VEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVAC 477

Query: 139 KKT--------KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
             +        +L EA  +   +   GL P   TY  ++  Y  VG+V+ AI L   M++
Sbjct: 478 NASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSK 537

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
               PDV   + LI+   K   VEEA             ++F  M+  N+ P   T NI 
Sbjct: 538 VQCEPDVIVINSLIDTLYKAGRVEEAW------------QMFCRMEEMNLAPTVVTYNIL 585

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           + GL K G + + ++LF ++    C      FN+L+   CK    ++A ++F K++  N 
Sbjct: 586 LAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNC 645

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
             DV+ +N +IH   K+ QIK   +L   M++
Sbjct: 646 RPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKK 677



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 144/288 (50%), Gaps = 26/288 (9%)

Query: 26   TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            T+NSLI      G I +   L  +M T GC+PN  T + +I+ L ++  ++  + L+  +
Sbjct: 827  TYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNL 886

Query: 86   VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC------- 138
            V+G  DF     P    +G LIDGL K   +D   ++F  M   G   N+ +        
Sbjct: 887  VSG--DFS----PTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGY 940

Query: 139  -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
             K   +  A    + M++ G+ P + +YT L++  C+ G+V+ A+  F+ + + G  PD+
Sbjct: 941  GKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDL 1000

Query: 198  FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             +Y+++ING  ++   EEA++            +F+EM+   +VP+ +T N  I  L   
Sbjct: 1001 VAYNLMINGLGRSQRTEEALS------------LFHEMQNRGIVPDLYTYNSLILNLGIV 1048

Query: 258  GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
            G + E  +++  L+    +  V  +N+LIRG    G  E+A  ++ K+
Sbjct: 1049 GMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKM 1096



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 148/337 (43%), Gaps = 26/337 (7%)

Query: 27   FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            +N LI GF    N+  A  L ++M + GC P+  T ++LI    ++G +N    L+ EM+
Sbjct: 793  YNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEML 852

Query: 87   NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
                      KPN   Y  +I  L K   +D+  DL+  +     +            L 
Sbjct: 853  TRGC------KPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLL 906

Query: 139  KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
            K  +L +A+ + + M+  G  P    Y  L+NGY  +G V+ A   F  M ++G  PD+ 
Sbjct: 907  KSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLK 966

Query: 199  SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            SY++L++  C    V++A++             F ++K   + P+    N+ I+GL ++ 
Sbjct: 967  SYTILVDILCIAGRVDDALHY------------FEKLKQAGLDPDLVAYNLMINGLGRSQ 1014

Query: 259  HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
               E + LF  ++       +  +NSLI      G+ E A +++ +L    L  +V  YN
Sbjct: 1015 RTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYN 1074

Query: 319  ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
             LI      G  +    +   M   GC  +  TF  L
Sbjct: 1075 ALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 156/346 (45%), Gaps = 27/346 (7%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQL-VKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            +D     +IK  C       A  + VK     G +P +   + LI G     N+ +   L
Sbjct: 753  DDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNL 812

Query: 82   HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK- 140
             +EM +          P+ F Y SLID   K   +++  DL+ EM  +G   NT+     
Sbjct: 813  FEEMKSAGC------APDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMV 866

Query: 141  -TKLVEANRLLELM------MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             + LV++NRL + M      +    +P   T+ PL++G    G+++ A  +FD M   G 
Sbjct: 867  ISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGC 926

Query: 194  MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             P+   Y++L+NGY K  +V+ A    + M+  G +            P+  +  I +D 
Sbjct: 927  RPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIR------------PDLKSYTILVDI 974

Query: 254  LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            LC  G V + +  F  L+ +  +  +  +N +I G  +    E A  LF+++  + +V D
Sbjct: 975  LCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPD 1034

Query: 314  VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +  YN LI  LG  G I++   +   ++  G   +V T+N L+  +
Sbjct: 1035 LYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGY 1080



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 169/415 (40%), Gaps = 90/415 (21%)

Query: 20   RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM---- 75
            RP + +TFN++I GF  +  I++A  L  +M     RP+  T  TL+ G+ ++G +    
Sbjct: 646  RP-DVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSGQIEDAF 703

Query: 76   ------------NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
                        N+     ++++ G+    G  K  +F    +   +CKD  V       
Sbjct: 704  RITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSV------- 756

Query: 124  MEMKDKGINANTLLCKKTKL-VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                   I    +LCK  K  V  N  ++   + G+ P +  Y  L++G+  V  V VA 
Sbjct: 757  ------LIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAW 810

Query: 183  ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK--IFNEMKLCNV 240
             LF+ M   G  PD F+Y+ LI+ + K+  + E  ++  EM+  G K   I   M + N+
Sbjct: 811  NLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNL 870

Query: 241  V---------------------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
            V                     P   T    IDGL K+G + +  E+F  +    C    
Sbjct: 871  VKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNS 930

Query: 280  EIFNSLIRGCCKFGIFEIASELF-----------------------------------NK 304
             I+N L+ G  K G  + A E F                                    K
Sbjct: 931  AIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEK 990

Query: 305  LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            L    L  D+VAYN++I+ LG+  + ++   L   M+  G   D+ T+N+L+++ 
Sbjct: 991  LKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNL 1045



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 168/408 (41%), Gaps = 76/408 (18%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N +TFN+L+   C    +  A ++  KM T  CRP+V T +T+I G  +   +   + L 
Sbjct: 613  NTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLF 672

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ----TKDLFMEM------------ 126
             +M         + +P+     +L+ G+ K   ++     T+D F ++            
Sbjct: 673  HQMKK-------LLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDV 725

Query: 127  --------------------------KDKG--INANTLLCKKTKL-VEANRLLELMMQRG 157
                                      KD    I    +LCK  K  V  N  ++   + G
Sbjct: 726  MGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELG 785

Query: 158  LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
            + P +  Y  L++G+  V  V VA  LF+ M   G  PD F+Y+ LI+ + K+  + E  
Sbjct: 786  VKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELF 845

Query: 218  NVSREMILNGFKK--IFNEMKLCNVV---------------------PETFTCNIFIDGL 254
            ++  EM+  G K   I   M + N+V                     P   T    IDGL
Sbjct: 846  DLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGL 905

Query: 255  CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
             K+G + +  E+F  +    C     I+N L+ G  K G  + A E F ++  + +  D+
Sbjct: 906  LKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDL 965

Query: 315  VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             +Y IL+  L   G++    +    +++ G   D+  +N LMI+ L +
Sbjct: 966  KSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYN-LMINGLGR 1012



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 150/345 (43%), Gaps = 28/345 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  + K   + G +R A   ++KM   G   N  + + LI  L ++G     L++++ M
Sbjct: 161 TYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRM 220

Query: 86  VN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TL 136
           V+ G+       KP++  + +L+    K R +     L  EM+  G+  N         +
Sbjct: 221 VSEGL-------KPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRV 273

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L +  K+ EA R+++ M   G  P + TYT L++  C   K++ A+ LF  M      PD
Sbjct: 274 LGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPD 333

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y  L++ +    ++++             +KI+ EM+     P+  T  I ++ LCK
Sbjct: 334 KVTYVTLLDKFSDCGHLDKV------------EKIWTEMEADGYAPDVVTFTILVNALCK 381

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E  +L  T+        +  +N+LI G  +    + A +LF+ +    +      
Sbjct: 382 AGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYT 441

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           Y +LI   GK G   K       M+  G A ++   N  + S  +
Sbjct: 442 YILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAE 486



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 14/210 (6%)

Query: 26   TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            TF  LI G    G + DA ++   M  +GCRPN    + L+ G  + G+++   +  + M
Sbjct: 897  TFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRM 956

Query: 86   VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            V       GI +P++  Y  L+D LC    VD     F ++K  G++ + +        L
Sbjct: 957  VKE-----GI-RPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGL 1010

Query: 138  CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
             +  +  EA  L   M  RG+ P ++TY  L+    +VG +  A  +++ +   G  P+V
Sbjct: 1011 GRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNV 1070

Query: 198  FSYSVLINGYCKNFNVEEAMNVSREMILNG 227
            F+Y+ LI GY  + N E A  + ++M++ G
Sbjct: 1071 FTYNALIRGYTLSGNSELAYGIYKKMMVGG 1100



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 166/375 (44%), Gaps = 45/375 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL- 81
           + VT+N ++K +   G + +A +L+ +M+   C P+V   ++LI  L + G +    ++ 
Sbjct: 508 DSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMF 567

Query: 82  -HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
              E +N          P V  Y  L+ GL K+  + +   LF  M   G + NT+    
Sbjct: 568 CRMEEMN--------LAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNT 619

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  ++  A ++   M      P + T+  +++G+    ++  AI LF  M +K 
Sbjct: 620 LLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQM-KKL 678

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSRE---MILNGFKKIFNEMKLCNVVPETFTCNI 249
             PD  +   L+ G  K+  +E+A  ++ +    + +   + F E  +  ++ E  T   
Sbjct: 679 LRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKA 738

Query: 250 FIDG-------LCKNGHVL-EVMELFPTLEISNCE--LFVE------------IFNSLIR 287
            + G       +CK+  VL  ++++    + ++    +FV+            ++N LI 
Sbjct: 739 ILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLID 798

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G  +    E+A  LF ++       D   YN LI A GK G+I +   L   M   GC  
Sbjct: 799 GFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKP 858

Query: 348 DVDTFNTLMISFLQK 362
           +  T+N ++IS L K
Sbjct: 859 NTITYN-MVISNLVK 872



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 135/352 (38%), Gaps = 97/352 (27%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N L+ G   EG I+ A QL + M   GC PN  T +TL+  L +   ++L LK+  +
Sbjct: 580 VTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYK 639

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC------ 138
           M           +P+V  + ++I G  K   +     LF +MK      +  LC      
Sbjct: 640 MTTMNC------RPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKLLRPDHVTLCTLLPGV 693

Query: 139 -KKTKLVEANRLLE---------------------LMMQRGLNPVIF------------- 163
            K  ++ +A R+ E                     ++ + G    I              
Sbjct: 694 IKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKD 753

Query: 164 --TYTPLLNGYCLVGKVNVAIALFDSMARK-GFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
                P++   C   K +VA  +F    ++ G  P +  Y++LI+G+ +  NVE A N  
Sbjct: 754 DSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWN-- 811

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                     +F EMK     P+TFT N  ID   K+G + E+ +L+  +          
Sbjct: 812 ----------LFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEM---------- 851

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
               L RGC                       + + YN++I  L K  ++ K
Sbjct: 852 ----LTRGC---------------------KPNTITYNMVISNLVKSNRLDK 878



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 94/236 (39%), Gaps = 33/236 (13%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN--- 205
           + +LM ++ +   + TY  +     + G +  A +  + M   GF+ + +SY+ LI+   
Sbjct: 146 VFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLL 205

Query: 206 --GYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNV 240
             G+CK     EA+ V R M+  G K                        +  EM+   +
Sbjct: 206 QSGFCK-----EALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGL 260

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P  +T  I I  L ++G + E   +   ++   C   V  +  LI   C     + A  
Sbjct: 261 RPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMC 320

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           LF K+   +   D V Y  L+      G + K   +   ME +G A DV TF  L+
Sbjct: 321 LFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILV 376


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 174/361 (48%), Gaps = 37/361 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI G C  GN+  A  L  KM   G  PN  T   L+ G  + G      +++
Sbjct: 192 NVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMY 251

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M        GI  PN + Y  LI   C   +VD+   +F EM++KGI    +      
Sbjct: 252 ENMKRS-----GIV-PNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILI 305

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  K  EA +L+  + + GL+P I TY  L+NG+C VGK++ A+ LF+ +   G  
Sbjct: 306 GGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLS 365

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIFNEMKLCN- 239
           P + +Y+ LI GY K  N+  A+++ +EM              +++ F ++    K C  
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEM 425

Query: 240 --------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                   +VP+ +T ++ I GLC +G++ E  +LF +L   + +    I+N++I G CK
Sbjct: 426 HSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCK 485

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A  L N++    +V +V ++   I  L ++ + K+   LL  M  +G    V  
Sbjct: 486 EGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSL 545

Query: 352 F 352
           +
Sbjct: 546 Y 546



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 153/336 (45%), Gaps = 26/336 (7%)

Query: 36  MEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGG 94
           + G I  +  L    A F  C       DT++     + + +  L     M++     G 
Sbjct: 65  ISGRIPSSLMLQLTQAHFTPCLTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHE----GH 120

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-NANTL------LCKKTKLVEAN 147
           +   N F   +L+  L +    D+   +F E+K K + +A +        C+    V+  
Sbjct: 121 VPLSNTF--NNLMCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGF 178

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           RLL ++ + GL+P +  YT L++G C  G V +A  LF  M R G +P+  +YSVL+NG+
Sbjct: 179 RLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGF 238

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
            K         + RE    GF+ ++  MK   +VP  +  N  I   C  G V +  ++F
Sbjct: 239 FKQ-------GLQRE----GFQ-MYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVF 286

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +        V  +N LI G C+   F  A +L +K++   L  ++V YNILI+     
Sbjct: 287 AEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDV 346

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           G++     L   ++ +G +  + T+NTL+  + + E
Sbjct: 347 GKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVE 382



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 134/306 (43%), Gaps = 26/306 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   +N LI  +C  G +  A ++  +M   G    V T + LI GL R       +KL 
Sbjct: 262 NAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLV 321

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
            + VN +G       PN+  Y  LI+G C    +D    LF ++K  G++      NTL+
Sbjct: 322 HK-VNKVG-----LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLI 375

Query: 138 CKKTK---LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              +K   L  A  L++ M +R + P   TYT L++ +  +     A  +   M + G +
Sbjct: 376 AGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLV 435

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV++YSVLI+G C + N++EA             K+F  +   ++ P +   N  I G 
Sbjct: 436 PDVYTYSVLIHGLCVHGNMKEA------------SKLFKSLGEMHLQPNSVIYNTMIHGY 483

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G     + L   +  S     V  F S I   C+   ++ A  L  ++    L   V
Sbjct: 484 CKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSV 543

Query: 315 VAYNIL 320
             Y ++
Sbjct: 544 SLYKMV 549



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 122/267 (45%), Gaps = 20/267 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTL------LCKKTKLVEANRL 149
           PNV  Y +LIDG CK   V   K+LF +M   G+  N +T         K+    E  ++
Sbjct: 191 PNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQM 250

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            E M + G+ P  + Y  L++ YC  G V+ A  +F  M  KG    V +Y++LI G C+
Sbjct: 251 YENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCR 310

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                EA+            K+ +++    + P   T NI I+G C  G +   + LF  
Sbjct: 311 GKKFGEAV------------KLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQ 358

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           L+ S     +  +N+LI G  K      A +L  ++  + +    V Y ILI A  +   
Sbjct: 359 LKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNY 418

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
            +K   +   ME++G   DV T++ L+
Sbjct: 419 TEKACEMHSLMEKSGLVPDVYTYSVLI 445



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 14/227 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N LI GFC  G +  A +L  ++ + G  P + T +TLI G  +  N+   L L 
Sbjct: 332 NIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLV 391

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM            P+   Y  LID   +    ++  ++   M+  G+  +        
Sbjct: 392 KEMEER------CIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLI 445

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC    + EA++L + + +  L P    Y  +++GYC  G    A+ L + M   G +
Sbjct: 446 HGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMV 505

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           P+V S+   I   C++   +EA  +  +MI +G K   +  K+ + V
Sbjct: 506 PNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMVHKV 552



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI G C+ GN+++AS+L K +     +PN    +T+I G  + G+    L+L  EM
Sbjct: 440 TYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEM 499

Query: 86  VN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           V+ GM        PNV  + S I  LC+D    + + L  +M + G+  +  L K    V
Sbjct: 500 VHSGM-------VPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMVHKV 552

Query: 145 EAN 147
           + +
Sbjct: 553 KGD 555


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 167/355 (47%), Gaps = 30/355 (8%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R   PL   TFN +++  C  G    A +L+++M     RPN  T +T+I G    G + 
Sbjct: 107 RLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQ 162

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------ 130
             L + +EM     + GGI  PN + YG++I G CK   VD+   +F EM  KG      
Sbjct: 163 AALDIMREMR----ERGGI-APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEA 217

Query: 131 INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +  N L+   C + KL  A    + M++RG+   + TY  L++   + G+   A  L + 
Sbjct: 218 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 277

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  KG  PDVF+Y++LING+CK  NV++A+            +IF  M    V     T 
Sbjct: 278 MGGKGLAPDVFTYNILINGHCKEGNVKKAL------------EIFENMSRRGVRATVVTY 325

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              I  L K G V E  +LF           + ++N+LI      G  + A E+  ++  
Sbjct: 326 TALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 385

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           K +  D V YN L+  L   G++ +   L+  M E G   D+ T+NTL+  +  K
Sbjct: 386 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMK 440



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 174/378 (46%), Gaps = 44/378 (11%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRT 72
            +R+  RP N VT+N++I GFC  G ++ A  ++++M   G   PN  T  T+I+G  + 
Sbjct: 136 LLRQMPRP-NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 194

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC-----------KDRLVDQTKD 121
           G ++  +K+  EM+       G  KP    Y +LI G C           +DR+V++   
Sbjct: 195 GRVDEAVKVFDEMLTK-----GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVA 249

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           + +   +  ++A   L    +  EA  L+E M  +GL P +FTY  L+NG+C  G V  A
Sbjct: 250 MTVATYNLLVHA---LFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKA 306

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK------------ 229
           + +F++M+R+G    V +Y+ LI    K   V+E   +  E +  G +            
Sbjct: 307 LEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 366

Query: 230 -----------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                      +I  EM+   + P+  T N  + GLC  G V E  +L   +     +  
Sbjct: 367 HSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPD 426

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+LI G    G  + A  + N++  K     ++ YN LI  L K GQ      ++ 
Sbjct: 427 LVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVK 486

Query: 339 SMEENGCALDVDTFNTLM 356
            M ENG   D  T+ +L+
Sbjct: 487 EMVENGITPDDSTYISLI 504



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           +T+N+LI+G C  G   DA  +VK+M   G  P+ +T  +LI GL
Sbjct: 463 LTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 507


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 164/344 (47%), Gaps = 28/344 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N V++ ++I GF  E    +A  L  +M   G  P++ T + LI  L + GN+  + KL
Sbjct: 179 FNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKL 238

Query: 82  HQE-MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
             + M  G+        PN+F +   I GLC+   +D+   L   +  +G     I+ NT
Sbjct: 239 FSKVMKRGVC-------PNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNT 291

Query: 136 LLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+C   K +KLVEA   L  M+  G+ P  FTY  ++NG+C  G +  A  +      KG
Sbjct: 292 LICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKG 351

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F+PD F+YS LING C + ++  AM V  E +  GFK                  N  + 
Sbjct: 352 FIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKH------------SIILYNTLVK 399

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GL K G VL+ ++L   +    C   +  +N ++ G CK G    A+ + N    K  + 
Sbjct: 400 GLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIP 459

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D+  +N LI    K+  + K   +L +M  +G   DV T+NTL+
Sbjct: 460 DIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLL 503



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 185/367 (50%), Gaps = 38/367 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +++N+LI GFC    + +A   + KM   G  PN  T +T+I G  + G M    K+ ++
Sbjct: 287 ISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRD 346

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
            +     F G + P+ F Y SLI+GLC D  +++   +F E  +KG     I  NTL   
Sbjct: 347 AM-----FKG-FIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKG 400

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K+  +++A +L++ MM+ G +P I+TY  ++NG C +G ++ A  + +    KG +PD
Sbjct: 401 LSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPD 460

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNG-------FKKIFNEM----KLCNVV---- 241
           +F+++ LI+GYCK  N+++A+ +   M+ +G       +  + N +    KL NVV    
Sbjct: 461 IFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFK 520

Query: 242 --------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P   T NI I+  CK+  V E MELF  ++       +    +LI G C  G
Sbjct: 521 AMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNG 580

Query: 294 IFEIASELFNKLSCKNLVADVVA-YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             + A ELF  +  +   +   A +NI+I+A   +  +     L   M  + CA D  T+
Sbjct: 581 ELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTY 640

Query: 353 NTLMISF 359
             ++ S+
Sbjct: 641 RVMIDSY 647



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 173/376 (46%), Gaps = 35/376 (9%)

Query: 4   VLGALMAFGSF--IRRCYRPLNDV-------TFNSLIKGFCMEGNIRDASQLVKKMATFG 54
           ++  L+ +G F    + Y  + D+       T    +K FC+ G    A +L+  M   G
Sbjct: 117 IMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQG 176

Query: 55  CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR 114
           C  N  +   +I+G  +         L  EM+       GI  P++  +  LI  LCK  
Sbjct: 177 CEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQ-----GIC-PDILTFNKLIHVLCKKG 230

Query: 115 LVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
            V +++ LF ++  +G+  N          LC+K  + EA RLLE ++  GL P + +Y 
Sbjct: 231 NVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYN 290

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            L+ G+C   K+  A      M   G  P+ F+Y+ +ING+CK   ++ A  + R+ +  
Sbjct: 291 TLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFK 350

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
           GF            +P+ FT +  I+GLC +G +   M +F        +  + ++N+L+
Sbjct: 351 GF------------IPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLV 398

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
           +G  K G+   A +L   +       D+  YN++++ L K G +   N +L      GC 
Sbjct: 399 KGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCI 458

Query: 347 LDVDTFNTLMISFLQK 362
            D+ TFNTL+  + ++
Sbjct: 459 PDIFTFNTLIDGYCKQ 474



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 170/363 (46%), Gaps = 37/363 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN LI   C +GN++++ +L  K+   G  PN+ T +  I GL R G ++   +L + 
Sbjct: 217 LTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLES 276

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +V+      G+  P+V  Y +LI G CK   + + +    +M + G+  N          
Sbjct: 277 IVSE-----GL-TPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   +  A+++L   M +G  P  FTY+ L+NG C  G +N A+A+F     KGF   
Sbjct: 331 FCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHS 390

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFN 233
           +  Y+ L+ G  K   V +A+ + ++M              ++NG  K         I N
Sbjct: 391 IILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILN 450

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +      +P+ FT N  IDG CK  ++ + +E+  T+        V  +N+L+ G CK  
Sbjct: 451 DAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKAR 510

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             +   + F  +  K    +++ YNILI +  K+ ++ +   L   M+  G   D+ T  
Sbjct: 511 KLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLC 570

Query: 354 TLM 356
           TL+
Sbjct: 571 TLI 573



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 163/355 (45%), Gaps = 50/355 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK-- 80
           N+ T+N++I GFC  G +++A ++++     G  P+  T  +LI GL   G+MN  +   
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVF 379

Query: 81  -------------LHQEMVNGMGDFGGIYK--------------PNVFCYGSLIDGLCKD 113
                        L+  +V G+   G + +              P+++ Y  +++GLCK 
Sbjct: 380 YEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKM 439

Query: 114 RLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTY 165
             +     +  +   KG        NTL+   CK+  + +A  +L+ M+  G+ P + TY
Sbjct: 440 GCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITY 499

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             LLNG C   K++  +  F +M  KG  P++ +Y++LI  +CK+  V EAM        
Sbjct: 500 NTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAM-------- 551

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-NCELFVEIFNS 284
               ++F EMK   + P+  T    I GLC NG + +  ELF T+E          IFN 
Sbjct: 552 ----ELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNI 607

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
           +I   C      +A +LF+K+   +   D   Y ++I +  K G I   +  LL 
Sbjct: 608 MINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLE 662



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 111/284 (39%), Gaps = 60/284 (21%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN+LI G+C + N+  A +++  M + G  P+V T +TL+ GL +   ++  +   + M
Sbjct: 463 TFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAM 522

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------- 136
           +           PN+  Y  LI+  CKDR V +  +LF EMK +G+  + +         
Sbjct: 523 LEKGC------TPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGL 576

Query: 137 -----------------------------------LCKKTKLVEANRLLELMMQRGLNPV 161
                                               C K  +  A +L   M      P 
Sbjct: 577 CSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPD 636

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
            +TY  +++ YC  G +++A         KG +P   +   ++N  C    + EA+ +  
Sbjct: 637 NYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIIN 696

Query: 222 EMILNGF-----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
            M+ NG        IF   K     P+     I ++ L K  H+
Sbjct: 697 LMVQNGIVPEEVNSIFEADKKEVAAPK-----IVVEYLLKKSHI 735



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 23/244 (9%)

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +K K+ EA  + E M      P + +Y  ++N     G  + A  ++  M   G  PDV+
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVY 147

Query: 199 SYSVLINGYCKNFNVEEAMN--------------VSREMILNGFKK---------IFNEM 235
           ++++ +  +C       A+               VS   +++GF K         +F+EM
Sbjct: 148 THTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEM 207

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               + P+  T N  I  LCK G+V E  +LF  +        +  FN  I+G C+ G  
Sbjct: 208 LKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAI 267

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + A+ L   +  + L  DV++YN LI    K  ++ +    L  M  +G   +  T+NT+
Sbjct: 268 DEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTI 327

Query: 356 MISF 359
           +  F
Sbjct: 328 INGF 331



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 12/198 (6%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  ++  Y   GKV  A+ +F+ M      P V SY+ ++N   +     +A        
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQA-------- 130

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                K++  MK   + P+ +T  I +   C  G     + L   +    CE     + +
Sbjct: 131 ----HKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCA 186

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +I G  K      A  LF+++  + +  D++ +N LIH L K+G +++   L   + + G
Sbjct: 187 VISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRG 246

Query: 345 CALDVDTFNTLMISFLQK 362
              ++ TFN  +    +K
Sbjct: 247 VCPNLFTFNIFIQGLCRK 264


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 171/345 (49%), Gaps = 26/345 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N+L+   C   NI +A ++  +M+  G  P++ +  +LI  L R G++   L   
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           +EM     +  GI   NV  Y  LIDG C++  +     +  EM  +G     +  NT L
Sbjct: 421 REM-----ERSGIVPDNVI-YTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFL 474

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CKK    +A+ L   M++RG+ P  +T+T L+ GYC  G ++ A+ LF++M R    
Sbjct: 475 NGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLK 534

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +Y+ LI+G+CK   +  A            K+++++M   +++P+  +    ++G 
Sbjct: 535 PDKVTYNTLIDGFCKAGEMGRA------------KELWDDMIRKDIIPDHISYGTVLNGF 582

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C +G + E + L   +        +   N+LI+G C+ G    A E  +K+    ++ D 
Sbjct: 583 CSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDS 642

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +YN LI    KE  ++K   L+  ME+ G   ++ T+N ++  F
Sbjct: 643 FSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGF 687



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 173/376 (46%), Gaps = 61/376 (16%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           ++ L++ +     +R+ S+  + +   G   ++  C+ L+ GL RTG ++L  +++ E+V
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
            G     GI + NV+    +++ LCKDR  +       +M+ KG+ A     NTL+   C
Sbjct: 250 RG-----GI-ELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYC 303

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA----------------- 181
           ++  + EA +LL     RG+ P + TY  +L G C +GK + A                 
Sbjct: 304 REGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAA 363

Query: 182 ------------------IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
                               +FD M+R+G +PD+ S+S LI    +N ++ +A+      
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQAL------ 417

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                   F EM+   +VP+     I IDG C+NG + + +++   +    C + V  +N
Sbjct: 418 ------MHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYN 471

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           + + G CK  +F  A  LFN++  + +V D   +  LI    K+G + K   L  +M   
Sbjct: 472 TFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT 531

Query: 344 GCALDVDTFNTLMISF 359
               D  T+NTL+  F
Sbjct: 532 NLKPDKVTYNTLIDGF 547



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 175/369 (47%), Gaps = 37/369 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T N ++   C +    +    +  M   G   ++ T +TLI    R G +    +L
Sbjct: 255 LNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQL 314

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL 136
               +N     G   +P +  Y +++ GLCK    D+ KD+ +EM   G+       NTL
Sbjct: 315 ----LNSFSSRG--MEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTL 368

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   C++  ++EA  + + M +RG+ P + +++ L+      G +  A+  F  M R G 
Sbjct: 369 LVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGI 428

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGFKK--------- 230
           +PD   Y++LI+G+C+N  + +A+ +  EM+              LNG  K         
Sbjct: 429 VPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADM 488

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +FNEM    +VP+ +T    I G CK+G++ + + LF  +  +N +     +N+LI G C
Sbjct: 489 LFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFC 548

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G    A EL++ +  K+++ D ++Y  +++     G + +   L   M E G   ++ 
Sbjct: 549 KAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLV 608

Query: 351 TFNTLMISF 359
           T NTL+  +
Sbjct: 609 TCNTLIKGY 617



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 160/337 (47%), Gaps = 34/337 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           ALM F    R    P ++V +  LI GFC  G + DA ++  +M   GC  +V T +T +
Sbjct: 416 ALMHFREMERSGIVP-DNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFL 474

Query: 67  TGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            GL +         L  EMV  GM        P+ + + +LI G CKD  +D+  +LF  
Sbjct: 475 NGLCKKKMFADADMLFNEMVERGM-------VPDFYTFTTLIRGYCKDGNMDKALNLFEA 527

Query: 126 M-----KDKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M     K   +  NTL+   CK  ++  A  L + M+++ + P   +Y  +LNG+C  G 
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGL 587

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +  A+ L D M  KG  P++ + + LI GYC++ ++ +A     +MI NG          
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG---------- 637

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             ++P++F+ N  IDG  K  ++ +   L   +E    +  +  +N ++ G C  G  + 
Sbjct: 638 --IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQE 695

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           A ++  K+    +  D   Y+ LI+     G + ++N
Sbjct: 696 AEQVLRKMIEIGINPDGATYSSLIN-----GHVSQDN 727



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 15/194 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           +   IR+   P + +++ +++ GFC  G + +A  L  +M   G RPN+ TC+TLI G  
Sbjct: 560 WDDMIRKDIIP-DHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYC 618

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R+G+M    +   +M++      GI  P+ F Y +LIDG  K+  +++   L  EM+ +G
Sbjct: 619 RSGDMPKAYEYLSKMISN-----GII-PDSFSYNTLIDGYLKEANLEKAFILINEMEKRG 672

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           +  N +         C + K+ EA ++L  M++ G+NP   TY+ L+NG+     +  A 
Sbjct: 673 LQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAF 732

Query: 183 ALFDSMARKGFMPD 196
              D M ++G +PD
Sbjct: 733 RFHDEMLQRGLVPD 746



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  L+  Y    K+      F  + RKG    + + + L+ G  +   V+ A  +  E++
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
             G +         NV    +T NI ++ LCK+     VM     +E       +  +N+
Sbjct: 250 RGGIE--------LNV----YTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNT 297

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI   C+ G+ E A +L N  S + +   ++ YN +++ L K G+  +   +L+ M + G
Sbjct: 298 LINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLG 357

Query: 345 CALDVDTFNTLMISFLQKE 363
              +  T+NTL++   +++
Sbjct: 358 LTPNAATYNTLLVEICRRD 376


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 171/345 (49%), Gaps = 26/345 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N+L+   C   NI +A ++  +M+  G  P++ +  +LI  L R G++   L   
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           +EM     +  GI   NV  Y  LIDG C++  +     +  EM  +G     +  NT L
Sbjct: 421 REM-----ERSGIVPDNVI-YTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFL 474

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CKK    +A+ L   M++RG+ P  +T+T L+ GYC  G ++ A+ LF++M R    
Sbjct: 475 NGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLK 534

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +Y+ LI+G+CK   +  A            K+++++M   +++P+  +    ++G 
Sbjct: 535 PDKVTYNTLIDGFCKAGEMGRA------------KELWDDMIRKDIIPDHISYGTVLNGF 582

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C +G + E + L   +        +   N+LI+G C+ G    A E  +K+    ++ D 
Sbjct: 583 CSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDS 642

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +YN LI    KE  ++K   L+  ME+ G   ++ T+N ++  F
Sbjct: 643 FSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGF 687



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 173/376 (46%), Gaps = 61/376 (16%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           ++ L++ +     +R+ S+  + +   G   ++  C+ L+ GL RTG ++L  +++ E+V
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
            G     GI + NV+    +++ LCKDR  +       +M+ KG+ A     NTL+   C
Sbjct: 250 RG-----GI-ELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYC 303

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA----------------- 181
           ++  + EA +LL     RG+ P + TY  +L G C +GK + A                 
Sbjct: 304 REGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAA 363

Query: 182 ------------------IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
                               +FD M+R+G +PD+ S+S LI    +N ++ +A+      
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQAL------ 417

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                   F EM+   +VP+     I IDG C+NG + + +++   +    C + V  +N
Sbjct: 418 ------MHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYN 471

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           + + G CK  +F  A  LFN++  + +V D   +  LI    K+G + K   L  +M   
Sbjct: 472 TFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT 531

Query: 344 GCALDVDTFNTLMISF 359
               D  T+NTL+  F
Sbjct: 532 NLKPDKVTYNTLIDGF 547



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 175/369 (47%), Gaps = 37/369 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T N ++   C +    +    +  M   G   ++ T +TLI    R G +    +L
Sbjct: 255 LNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQL 314

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL 136
               +N     G   +P +  Y +++ GLCK    D+ KD+ +EM   G+       NTL
Sbjct: 315 ----LNSFSSRG--MEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTL 368

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   C++  ++EA  + + M +RG+ P + +++ L+      G +  A+  F  M R G 
Sbjct: 369 LVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGI 428

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGFKK--------- 230
           +PD   Y++LI+G+C+N  + +A+ +  EM+              LNG  K         
Sbjct: 429 VPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADM 488

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +FNEM    +VP+ +T    I G CK+G++ + + LF  +  +N +     +N+LI G C
Sbjct: 489 LFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFC 548

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G    A EL++ +  K+++ D ++Y  +++     G + +   L   M E G   ++ 
Sbjct: 549 KAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLV 608

Query: 351 TFNTLMISF 359
           T NTL+  +
Sbjct: 609 TCNTLIKGY 617



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 160/337 (47%), Gaps = 34/337 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           ALM F    R    P ++V +  LI GFC  G + DA ++  +M   GC  +V T +T +
Sbjct: 416 ALMHFREMERSGIVP-DNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFL 474

Query: 67  TGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            GL +         L  EMV  GM        P+ + + +LI G CKD  +D+  +LF  
Sbjct: 475 NGLCKKKMFADADMLFNEMVERGM-------VPDFYTFTTLIRGYCKDGNMDKALNLFEA 527

Query: 126 M-----KDKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M     K   +  NTL+   CK  ++  A  L + M+++ + P   +Y  +LNG+C  G 
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGL 587

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +  A+ L D M  KG  P++ + + LI GYC++ ++ +A     +MI NG          
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG---------- 637

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             ++P++F+ N  IDG  K  ++ +   L   +E    +  +  +N ++ G C  G  + 
Sbjct: 638 --IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQE 695

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           A ++  K+    +  D   Y+ LI+     G + ++N
Sbjct: 696 AEQVLRKMIEIGINPDGATYSSLIN-----GHVSQDN 727



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 15/194 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           +   IR+   P + +++ +++ GFC  G + +A  L  +M   G RPN+ TC+TLI G  
Sbjct: 560 WDDMIRKDIIP-DHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYC 618

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R+G+M    +   +M++      GI  P+ F Y +LIDG  K+  +++   L  EM+ +G
Sbjct: 619 RSGDMPKAYEYLSKMISN-----GII-PDSFSYNTLIDGYLKEANLEKAFILINEMEKRG 672

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           +  N +         C + K+ EA ++L  M++ G+NP   TY+ L+NG+     +  A 
Sbjct: 673 LQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAF 732

Query: 183 ALFDSMARKGFMPD 196
              D M ++G +PD
Sbjct: 733 RFHDEMLQRGLVPD 746



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  L+  Y    K+      F  + RKG    + + + L+ G  +   V+ A  +  E++
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
             G +         NV    +T NI ++ LCK+     VM     +E       +  +N+
Sbjct: 250 RGGIE--------LNV----YTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNT 297

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI   C+ G+ E A +L N  S + +   ++ YN +++ L K G+  +   +L+ M + G
Sbjct: 298 LINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLG 357

Query: 345 CALDVDTFNTLMISFLQKE 363
              +  T+NTL++   +++
Sbjct: 358 LTPNAATYNTLLVEICRRD 376


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 169/395 (42%), Gaps = 66/395 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSL+ GFC    + +A +L++ M    C P V T  TLI G  R   +    ++ ++
Sbjct: 268 VTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMED 327

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M      F     P++  Y  L+DGLCK   +++  +L   M +K    + +        
Sbjct: 328 M------FKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNG 381

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+ +A  LLE+M++RG  P + T+  +++G+C  GKV+    + + M      PD
Sbjct: 382 LCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPD 441

Query: 197 VFSYSVLINGYCK-----------------------------NFNVEEAMNVSREMILNG 227
           V +YS LI+GYCK                                VEEA  V   M   G
Sbjct: 442 VVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQG 501

Query: 228 FKKIFNEMKL-----CNVV------------------PETFTCNIFIDGLCKNGHVLEVM 264
                +   L     C+V                   P  +T +I I+GLCK   V + +
Sbjct: 502 CPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAI 561

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            +   +    C   V  + SLI G CK    + A + F  +       D +AYNILI   
Sbjct: 562 NVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGF 621

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + G ++K   ++  M E GC  D  T+ +LM S 
Sbjct: 622 CQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 179/366 (48%), Gaps = 33/366 (9%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           R  +  ++N+++   C  G   +A ++++KM    C P+V T ++L+ G  +   M+   
Sbjct: 228 REPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAE 287

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL-- 136
           +L ++MV      G    P V  Y +LI G  + DRL D  + +  +M   GI+ + +  
Sbjct: 288 RLLEDMV------GRRCAPTVITYTTLIGGFSRADRLADAYR-VMEDMFKAGISPDLVTY 340

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LCK  KL EA+ LLE+M+++   P + TY+ L+NG C +GKV+ A  L + M  
Sbjct: 341 NCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLE 400

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMN--------------VSREMILNGF---KKIFN 233
           +G  P++ +++ +I+G+CK   V+E                 V+   +++G+    ++ +
Sbjct: 401 RGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQD 460

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
              +  + P+  + +  ++GLC  G V E  E+   +    C      +  +I G C   
Sbjct: 461 AFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVE 520

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A ++   +S +    ++  Y+ILI+ L K  +++    +L  M E GC  DV T+ 
Sbjct: 521 RGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYT 580

Query: 354 TLMISF 359
           +L+  F
Sbjct: 581 SLIDGF 586



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 146/305 (47%), Gaps = 20/305 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT++ L+ G C  G + DA  L++ M   GC+PN+ T +T+I G  + G ++   K+ + 
Sbjct: 373 VTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLEL 432

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--LCKKTK 142
           M            P+V  Y +LIDG CK   +     +     DK   ++ L  LC   K
Sbjct: 433 MKEVS------CTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGK 486

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           + EA  +++LM ++G  P    Y  ++ G C V + + A+ +   M+ +G  P++++YS+
Sbjct: 487 VEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSI 546

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LING CK   VE+A+NV   M+  G             VP+  T    IDG CK   +  
Sbjct: 547 LINGLCKTKRVEDAINVLDVMLEKG------------CVPDVATYTSLIDGFCKINKMDA 594

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             + F T+  S CE     +N LI G C+ G  E A E+   +  K    D   Y  L+ 
Sbjct: 595 AYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMR 654

Query: 323 ALGKE 327
           +L  E
Sbjct: 655 SLTTE 659



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 167/407 (41%), Gaps = 77/407 (18%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           +P N  T+ +LI GF   GN +   ++  +M      P+V T +T++    + G+++  L
Sbjct: 21  KPSNS-TYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRAL 79

Query: 80  KLHQEMVNGMGDFGGIY-KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
              +         G ++  P  F Y  LI GLC+ + +D+   L  EM  K  + +    
Sbjct: 80  SHFR---------GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVY 130

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LCK  K+  A  +L++M++R   P + TYT L+ G C    ++ A  L + M  
Sbjct: 131 NCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKE 190

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--------------------- 229
            G  PD  +Y+ L+NG CK   +EE   +  EM+  G +                     
Sbjct: 191 SGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEE 250

Query: 230 --KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV-------- 279
             KI  +M      P+  T N  +DG CK   + E   L   +    C   V        
Sbjct: 251 AGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIG 310

Query: 280 ---------------------------EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
                                        +N L+ G CK G  E A EL   +  K+   
Sbjct: 311 GFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAP 370

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           DVV Y+IL++ L K G++     LL  M E GC  ++ TFNT++  F
Sbjct: 371 DVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGF 417



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 123/256 (48%), Gaps = 32/256 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A +     + R  +P N VTFN++I GFC  G + +  ++++ M    C P+V T 
Sbjct: 387 KVDDARLLLEMMLERGCQP-NLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTY 445

Query: 63  DTLITGLRRTGNMNLTLKL---------HQEMVNGMGDFGGIYK--------------PN 99
            TLI G  +   M     +         +  M+ G+   G + +              P 
Sbjct: 446 STLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPT 505

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
              Y  +I GLC     D+   +   M ++G   N          LCK  ++ +A  +L+
Sbjct: 506 SSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLD 565

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
           +M+++G  P + TYT L++G+C + K++ A   F +M   G  PD  +Y++LI+G+C++ 
Sbjct: 566 VMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSG 625

Query: 212 NVEEAMNVSREMILNG 227
           NVE+A+ V + M+  G
Sbjct: 626 NVEKAIEVMQLMLEKG 641



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 14/167 (8%)

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P   +Y  LI G+ +  N +  + ++ EM+   F             P+  T N  +   
Sbjct: 22  PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFS------------PDVITHNTILKAY 69

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G +   +  F      +   F   +  LI G C+    + A +L +++  K+   D 
Sbjct: 70  CQIGDLDRALSHFRGKMWCSPTAFT--YCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDA 127

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             YN LI  L K G+I     +L  M E  C  DV T+ +L++   Q
Sbjct: 128 AVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQ 174


>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
          Length = 649

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 167/354 (47%), Gaps = 37/354 (10%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           RC  P N+VTF + I+ FC  G +  A QL+ +M  +GC P+V    TLI G    G+++
Sbjct: 220 RC--PPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVD 277

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-- 134
             L L   M         + KPN  CY + + GLC     +   +L  EM  KG + N  
Sbjct: 278 QALDLLNTM---------LCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEA 328

Query: 135 ------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                 + LC+   +  A  +LE M + G  P    Y  ++N     G+V+ A+ L +SM
Sbjct: 329 TFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM 388

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             K   PD   ++ ++ G+C+     E  + + E+I   F+        C ++  TF  N
Sbjct: 389 VCK---PDALGFNAVLKGFCR----AERWHDASELIAQMFRDD------CPLIEMTF--N 433

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           I ID LC+NG V    ++F  +    C   +  ++SL+ G  + G+ E+A +LF  + CK
Sbjct: 434 ILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCK 493

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
               D+ +YN ++  L +  + +    L+  M    C  +  TFN L+ S  QK
Sbjct: 494 ---PDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQK 544



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 167/359 (46%), Gaps = 44/359 (12%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           +G LMA    +R+   P N+ TF+ LI   C    +  A +++++M  +GC P+    + 
Sbjct: 311 IGELMA--EMVRKGCSP-NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNI 367

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           +I  L   G ++  L+L   MV          KP+   + +++ G C+        +L  
Sbjct: 368 IINSLSERGRVDDALRLLNSMV---------CKPDALGFNAVLKGFCRAERWHDASELIA 418

Query: 125 EM-KDK----GINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           +M +D      +  N L   LC+   +  A ++ E M +    P I TY+ LLNG+   G
Sbjct: 419 QMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQG 478

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
            V VAI LF SM  K   PD+FSY+ ++ G C+    E+A  +  EM+            
Sbjct: 479 LVEVAIQLFRSMPCK---PDIFSYNAVLKGLCRAARWEDAGELIAEMVGK---------- 525

Query: 237 LCNVVPETFTCNIFIDGLCKNGHV---LEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
             +  P   T NI I+ LC+ G V   +EV+E  P    S  ++F   +N+LI G  + G
Sbjct: 526 --DCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYG-STPDIFT--YNALINGFSEQG 580

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             + A +L + +SCK    D ++YN  +  L +  + +    L+  M  N C  +  TF
Sbjct: 581 RLDDALKLLSTMSCK---PDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 636



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 149/344 (43%), Gaps = 31/344 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           ++ N LIK  C  G + DA +++  +        V+  +TL+ G  R G +        E
Sbjct: 91  ISCNILIKKLCATGRLADAERVLDALKAAAAADAVSH-NTLVAGYCRDGRL-----ADAE 144

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTLL---CK 139
            V G     G    NV  Y +LIDG C+   +D    L   M +       NT+L   C 
Sbjct: 145 RVLGAARATG--AANVVTYTALIDGYCRSGRLDDALRLIASMPVAPDTYTYNTVLKGLCI 202

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             K  EA  L+  M++    P   T+   +  +C  G ++ A+ L D M R G  PDV  
Sbjct: 203 AKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVI 262

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           YS LING+ +  +V++A++            + N M LC   P T   N  + GLC    
Sbjct: 263 YSTLINGFSEQGHVDQALD------------LLNTM-LCK--PNTVCYNAALKGLCIAER 307

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
             ++ EL   +    C      F+ LI   C+  + + A E+  ++       D V YNI
Sbjct: 308 WEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNI 367

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +I++L + G++     LL SM    C  D   FN ++  F + E
Sbjct: 368 IINSLSERGRVDDALRLLNSMV---CKPDALGFNAVLKGFCRAE 408


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 173/374 (46%), Gaps = 52/374 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +++ G C     RDA +L+ +M   GC PN+ T + ++ GL     ++   K+ +E
Sbjct: 113 VTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEE 172

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTL---LC 138
           M V G       Y P+V  Y S I GLCK   VD+ +     M +    ++  T+   LC
Sbjct: 173 MAVRG-------YFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLC 225

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS----------- 187
           K   L  A+R+L+ M  RG  P + TY+ L++G+C  G+V  A+ L DS           
Sbjct: 226 KSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMV 285

Query: 188 ------------------------MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
                                   M R+GF PDV SY+  I+G CK   V++A  V   M
Sbjct: 286 AYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRM 345

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP-TLEISNCELFVEIF 282
           +  G     N      ++ +     + +DGLCK G   E   LF   L+   CE  V  +
Sbjct: 346 VERGCTP--NASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFY 403

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N ++   CK    + A ++  ++  KN   +VV +NIL+H L  + ++     +LL+M +
Sbjct: 404 NVMLDSHCKRRQIDKALQIHKQMLEKN-CCNVVTWNILVHGLCVDDRLSDAETMLLTMVD 462

Query: 343 NGCALDVDTFNTLM 356
            G   D  T+ TL+
Sbjct: 463 EGFIPDFVTYGTLV 476



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 163/375 (43%), Gaps = 52/375 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL- 81
           N  T+N L+     E     AS + ++M    C+P+  T   L+ GL R+  +    KL 
Sbjct: 6   NVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLL 65

Query: 82  --------------HQEMVNGMG---DFGGIYK-----------PNVFCYGSLIDGLCKD 113
                         +  +++G     DFG  +K           P V  Y +++DGLCK 
Sbjct: 66  GRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKA 125

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
                   L  EM+DKG + N          LC++ KL EA ++LE M  RG  P + TY
Sbjct: 126 ERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTY 185

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
              + G C   +V+ A      +AR    PDV SY+ +ING CK+ +++ A         
Sbjct: 186 NSFIKGLCKCDRVDEARKF---LARMPVTPDVVSYTTVINGLCKSGDLDSA--------- 233

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
               ++ + M      P+  T +  IDG CK G V   M L  ++    C   +  +NSL
Sbjct: 234 ---SRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSL 290

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           +    + G    A ++  ++  +    DVV+YN  I  L K  ++KK   +   M E GC
Sbjct: 291 LGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGC 350

Query: 346 ALDVDTFNTLMISFL 360
             +  +++ L++  L
Sbjct: 351 TPNASSYSMLIVDIL 365



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 162/334 (48%), Gaps = 39/334 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++ ++I G C  G++  AS+++  M+  GC P+V T  +LI G  + G +   + L   
Sbjct: 215 VSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDS 274

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+  +G      +PN+  Y SL+  L +   + + +D+ +EM+ +G   + +        
Sbjct: 275 MLK-LG-----CRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDG 328

Query: 137 LCKKTKLVEANRLLELMMQRGLNP----------VIFTYTPLLNGYCLVGKVNVAIALFD 186
           LCK  ++ +A  + + M++RG  P           I  YT LL+G C  G+ + A ALF 
Sbjct: 329 LCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFS 388

Query: 187 S-MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             +  K   PDVF Y+V+++ +CK   +++A+ + ++M+         E   CNVV    
Sbjct: 389 KVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQML---------EKNCCNVV---- 435

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T NI + GLC +  + +   +  T+           + +L+   CK G    A ELF + 
Sbjct: 436 TWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEA 495

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
                V DVV Y+ LI  L  E  + +E YLL +
Sbjct: 496 VKGGCVPDVVTYSALITGLVHE-NMAEEAYLLFT 528



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 58/304 (19%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           Y+ NVF Y  L+  L ++   D+   +F EM DK    +          LC+  +L +A 
Sbjct: 3   YEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKAR 62

Query: 148 RLLELMMQRGLN-----------------------------------PVIFTYTPLLNGY 172
           +LL  M + G                                     P + TYT +++G 
Sbjct: 63  KLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGL 122

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C   +   A+ L D M  KG  P++++Y+V++ G C+   ++EA            KK+ 
Sbjct: 123 CKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEA------------KKML 170

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            EM +    P+  T N FI GLCK   V E  +    + ++     V  + ++I G CK 
Sbjct: 171 EEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTP---DVVSYTTVINGLCKS 227

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  + AS + + +S +    DVV Y+ LI    K G++++   LL SM + GC  ++  +
Sbjct: 228 GDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAY 287

Query: 353 NTLM 356
           N+L+
Sbjct: 288 NSLL 291



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 23/218 (10%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT-------- 67
           RR + P + V++N+ I G C    ++ A  +  +M   GC PN ++   LI         
Sbjct: 312 RRGFTP-DVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVL 370

Query: 68  --GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
             GL + G  +    L  ++++       I +P+VF Y  ++D  CK R +D+   +  +
Sbjct: 371 LDGLCKGGRFDEACALFSKVLDE-----KICEPDVFFYNVMLDSHCKRRQIDKALQIHKQ 425

Query: 126 MKDKG----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           M +K     +  N L   LC   +L +A  +L  M+  G  P   TY  L++  C  GK 
Sbjct: 426 MLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKS 485

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
             A+ LF+   + G +PDV +YS LI G       EEA
Sbjct: 486 AAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEA 523



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G+  +VF+Y+ L+            + ++RE   +    +F EM   +  P+ FT  I +
Sbjct: 2   GYEHNVFTYNKLL------------LQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILL 49

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
            GLC++  + +  +L   ++   C     I+N+LI G  K   F  A +   ++   + +
Sbjct: 50  RGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCL 109

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             VV Y  ++  L K  + +    LL  M + GC+ ++ T+N ++
Sbjct: 110 PTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIV 154


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 164/342 (47%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI GF  EGN  +A +++K+M   G +PN  T D L+ GL + G M+    L 
Sbjct: 221 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 280

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MV         ++P+   Y  +I+G  +         L  EM++ GI+ N        
Sbjct: 281 KQMVRDS------HRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMI 334

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +  +A+ LLE M  +GL P  F Y PL++GYC  G V++A  +FD M +   +
Sbjct: 335 HGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVL 394

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD++ Y+ LI G  K   VEE+             K F +M+   ++P  FT +  I G 
Sbjct: 395 PDLYCYNSLIFGLSKVGRVEES------------TKYFAQMQERGLLPNEFTYSGLIHGY 442

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            KNG +    +L   +  +  +    I+  L+    K    E  S  F  +  + ++ D 
Sbjct: 443 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 502

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             Y ILIH L   G ++    +L  +E+NG   DV  +++L+
Sbjct: 503 RIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLI 544



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 173/344 (50%), Gaps = 26/344 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+++LI+ +C       A +++ +M   GC  N  T + LI GL R+G +       ++M
Sbjct: 119 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 178

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
                D+G +  P+ F YG+LI+GLCK R  ++ K L  EM    +  N ++        
Sbjct: 179 ----EDYGLV--PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 232

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            ++    EA ++++ M+  G+ P   TY  L+ G C +G+++ A  L   M R    PD 
Sbjct: 233 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDT 292

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+++I G+ ++ N ++A             ++ +EM+   + P  +T +I I GLC++
Sbjct: 293 ITYNLIIEGHFRHHNKKDAF------------RLLSEMENAGISPNVYTYSIMIHGLCQS 340

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G   +  +L   +     +    ++  LI G C+ G   +A E+F+K++  N++ D+  Y
Sbjct: 341 GEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCY 400

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           N LI  L K G++++       M+E G   +  T++ L+  +L+
Sbjct: 401 NSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 444



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 156/350 (44%), Gaps = 26/350 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN VT+N LI G C  G + +A    K M  +G  P+  T   LI GL ++   N    L
Sbjct: 150 LNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKAL 209

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EM           KPNV  Y +LIDG  ++   D+   +  EM   G+  N +     
Sbjct: 210 LDEMSCAE------LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNL 263

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++  A+ LL+ M++    P   TY  ++ G+        A  L   M   G 
Sbjct: 264 VRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGI 323

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V++YS++I+G C++   E+A ++  EM   G K            P  F     I G
Sbjct: 324 SPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK------------PNAFVYAPLISG 371

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C+ G+V    E+F  +   N    +  +NSLI G  K G  E +++ F ++  + L+ +
Sbjct: 372 YCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN 431

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              Y+ LIH   K G ++    L+  M + G   +   +  L+ S+ + +
Sbjct: 432 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSD 481



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 150/343 (43%), Gaps = 30/343 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T++ +I G C  G    AS L+++M T G +PN      LI+G  R GN++L  ++ 
Sbjct: 326 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF 385

Query: 83  QEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            +M  VN +        P+++CY SLI GL K   V+++   F +M+++G+  N      
Sbjct: 386 DKMTKVNVL--------PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSG 437

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K   L  A +L++ M+  GL P    Y  LL  Y     +    + F SM  +G
Sbjct: 438 LIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQG 497

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
            M D   Y +LI+    + N+E A  V  E+  NG             VP+    +  I 
Sbjct: 498 VMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNG------------SVPDVHVYSSLIS 545

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK     +   +   +     +  +  +N+LI G CK G    A  +FN +  K LV 
Sbjct: 546 GLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVP 605

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + V Y  LI    K G I    YL   M   G   D   ++ L
Sbjct: 606 NCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 648



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 172/417 (41%), Gaps = 90/417 (21%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-VTTCD------ 63
           F     R   P N+ T++ LI G+   G++  A QLV++M   G +PN V   D      
Sbjct: 420 FAQMQERGLLP-NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF 478

Query: 64  ----------------------------TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI 95
                                        LI  L  +GNM    ++  E+       G +
Sbjct: 479 KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKN----GSV 534

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
             P+V  Y SLI GLCK    ++   +  EM  KG++ N +        LCK   +  A 
Sbjct: 535 --PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 592

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +   ++ +GL P   TYT L++G C VG ++ A  L++ M   G  PD F YSVL  G 
Sbjct: 593 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 652

Query: 208 CKNFNVEEAMNVSREMILNGFKKI--FNE--------------MKLCNV------VPETF 245
               ++E+AM +  EM L G   I  FN               +KL +V      VP   
Sbjct: 653 SSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNAL 712

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCE--------LFVEIFNS----------LIR 287
           T    I GL + G + EV  +F  L+    E        LF+++ N           +IR
Sbjct: 713 TIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIR 772

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             CK G  + A  L + +  K+      +Y  ++  L ++G++ +   LL  M++ G
Sbjct: 773 DHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 829



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 156/367 (42%), Gaps = 38/367 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +NSLI G    G + ++++   +M   G  PN  T   LI G  + G++    +L Q M+
Sbjct: 400 YNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 459

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
               D G   KPN   Y  L++   K   +++    F  M D+G+  +          L 
Sbjct: 460 ----DTG--LKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLS 513

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
               +  A R+L  + + G  P +  Y+ L++G C       A  + D M++KG  P++ 
Sbjct: 514 SSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIV 573

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEM 235
            Y+ LI+G CK+ ++  A NV   ++  G                          ++NEM
Sbjct: 574 CYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEM 633

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               + P+ F  ++   G    G + + M L   + +      +  FN+L+ G CK G  
Sbjct: 634 LATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKM 692

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           +   +L + +  + LV + +    +I  L + G++ + + + + +++         F++L
Sbjct: 693 QETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSL 752

Query: 356 MISFLQK 362
            +  + +
Sbjct: 753 FMDMINQ 759



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 125/259 (48%), Gaps = 20/259 (7%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK--TKLVEAN------RLLELMMQRG 157
           L+D   K   V    ++ + M+D+G+  +   C      L+ A+      ++ E M+  G
Sbjct: 53  LVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAG 112

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           ++P ++TY+ L+  YC V + + A  +   M  +G   +  +Y+VLI G C++  VEEA 
Sbjct: 113 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 172

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                    GFKK   +M+   +VP+ FT    I+GLCK+    E   L   +  +  + 
Sbjct: 173 ---------GFKK---DMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKP 220

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V ++ +LI G  + G  + A ++  ++    +  + + Y+ L+  L K GQ+ + + LL
Sbjct: 221 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 280

Query: 338 LSMEENGCALDVDTFNTLM 356
             M  +    D  T+N ++
Sbjct: 281 KQMVRDSHRPDTITYNLII 299


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 166/345 (48%), Gaps = 19/345 (5%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN++I  +C  G +  A  ++ K+   G  P+  T  TLI GL   G ++  L  H  
Sbjct: 84  VTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDH 143

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++         ++ N   YG LI+GLCK         +  ++  K +N N +        
Sbjct: 144 VI------ARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDS 197

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK+  + EA  L   M+ + ++P + T++ L+ G+C+VG+   A  LF  M      PD
Sbjct: 198 LCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPD 257

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMI-----LNGFKKIFNEMKLCNVVPETFTCNIFI 251
           V ++++L++  CK  + +E  NV   M+     +N  K +FN +    V P+  +  I I
Sbjct: 258 VCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIII 317

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK   V E + LF  +           ++SLI G CK      A EL +++  +   
Sbjct: 318 KRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQP 377

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ADV+ Y   +HAL K  Q+ K   L+  +++ G   +++T+N L+
Sbjct: 378 ADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILI 422



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 175/417 (41%), Gaps = 79/417 (18%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  Y P + +T  +LIKG C+ G + +A      +   G R N  +   LI
Sbjct: 102 AFSVLAKILKMGYHP-DTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILI 160

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G     L++ +++       G +   NV  Y ++ID LCK++LV +  +L+ +M
Sbjct: 161 NGLCKMGETRAALQVLRKID------GKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQM 214

Query: 127 KDKGINANTL-------------------------------------------LCKKTKL 143
             K ++ + +                                           LCK+   
Sbjct: 215 IVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGST 274

Query: 144 VEANRLLELMMQ-----------------RGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            E   +L +MM+                 R + P + +YT ++   C +  V+ A++LF+
Sbjct: 275 KETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFN 334

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M  KG  PD  +YS LI+G CK+  +  A             ++ ++M       +  T
Sbjct: 335 EMRCKGITPDKVTYSSLIDGLCKSERISHAW------------ELLDQMHARGQPADVIT 382

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
              F+  LCKN  V + + L   ++    +  +  +N LI G CK G FE A  +F  L 
Sbjct: 383 YTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLL 442

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            K     V  YNI+I+ L  EG   +   LL  ME+NGC  DV T+ T++ +  + +
Sbjct: 443 IKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKND 499



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 31/310 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT---LKL 81
           VTF++LI GFCM G  ++A  L  +M      P+V T + L+  L + G+   T   L +
Sbjct: 224 VTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAV 283

Query: 82  HQEMVNGMGDFGGIYK--------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
             + VN +     ++         P+V  Y  +I  LCK ++VD+   LF EM+ KGI  
Sbjct: 284 MMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITP 343

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           + +        LCK  ++  A  LL+ M  RG    + TYT  L+  C   +V+ A+AL 
Sbjct: 344 DKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALV 403

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             +  +G  P++ +Y++LI+G CK    E A  + +++++ G+K               +
Sbjct: 404 KKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYK------------VTVW 451

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T NI I+GLC  G   E M L   +E + C   V  + ++IR   K      A +L  ++
Sbjct: 452 TYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHKAEKLLREM 511

Query: 306 SCKNLVADVV 315
             + L+ + V
Sbjct: 512 IARGLLEEKV 521



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 14/209 (6%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVN--VAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
           M++   +P I  +  +L         N  +AI+L+  +      P + +++ +IN YC  
Sbjct: 37  MLRMNPSPSIIEFNKILGSLVKSNNNNYPIAISLYHRLQLNAITPSIVTFNTVINCYCHL 96

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
             ++ A +V  +++  G+             P+T T    I GLC NG V E +     +
Sbjct: 97  GEMDFAFSVLAKILKMGYH------------PDTITLTTLIKGLCLNGKVHEALHFHDHV 144

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                 L    +  LI G CK G    A ++  K+  K +  +VV Y+ +I +L KE  +
Sbjct: 145 IARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLV 204

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISF 359
            +   L   M     + DV TF+ L+  F
Sbjct: 205 TEAYELYSQMIVKKVSPDVVTFSALIYGF 233


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 164/351 (46%), Gaps = 25/351 (7%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N V++ ++++G C      +A  L++ M   G R +V T  TLI GL     ++  L
Sbjct: 120 RP-NAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAAL 178

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +L  EM       G   +PNV  Y  L+ G C+         +F +M  +GI  + +   
Sbjct: 179 ELLDEMC------GSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFT 232

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK+ K  +A ++ ++M+QRGL P + TY  L+N  C  G V  A+ L   M  K
Sbjct: 233 GLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDK 292

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PDV +Y+ LI G      ++EAM+   EMI               V P+  T N  I
Sbjct: 293 GVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGD----------TVVEPDVVTFNSVI 342

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
            GLCK G + + +++   +    C   +  +N LI G  +    ++A  L ++L+   L 
Sbjct: 343 HGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLE 402

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            D   Y+ILI+   K  ++ +    L +M + G   ++  +  L+ +  Q+
Sbjct: 403 PDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQ 453



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 164/346 (47%), Gaps = 45/346 (13%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            ++R   P N VT+N LI   C EG++R+A  L K+M   G  P+V T +TLI GL    
Sbjct: 254 MVQRGLEP-NVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVL 312

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            M+  +   +EM+ G      + +P+V  + S+I GLCK                     
Sbjct: 313 EMDEAMSFLEEMIQG----DTVVEPDVVTFNSVIHGLCK--------------------- 347

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                   ++ +A ++ E+M +RG    + TY  L+ G+  V KV +A+ L D +A  G 
Sbjct: 348 ------IGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGL 401

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD F+YS+LING+ K + V+ A            +K    M+   +  E F     +  
Sbjct: 402 EPDSFTYSILINGFSKMWEVDRA------------EKFLCTMRQRGIKAELFHYIPLLAA 449

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           +C+ G +   M LF  ++  NC L    ++++I G CK G  +   +L   +  + L  D
Sbjct: 450 MCQQGMMERAMGLFNEMD-KNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPD 508

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            V Y++LI+   K G +++   +L  M  +G   DV  F++L+  +
Sbjct: 509 AVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGY 554



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 127/273 (46%), Gaps = 31/273 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFNS+I G C  G +  A ++ + MA  GC  N+ T + LI G  R   + + + L  E
Sbjct: 336 VTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDE 395

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------T 135
           + ++G+       +P+ F Y  LI+G  K   VD+ +     M+ +GI A          
Sbjct: 396 LAISGL-------EPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLA 448

Query: 136 LLCKKTKLVEANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            +C++  +  A  L   M +  GL+ +   Y+ +++G C  G +     L   M  +G  
Sbjct: 449 AMCQQGMMERAMGLFNEMDKNCGLDAI--AYSTMIHGACKSGDMKTVKQLIQDMLDEGLA 506

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +YS+LIN Y K  ++EEA  V ++M  +GF            VP+    +  I G 
Sbjct: 507 PDAVTYSMLINMYAKLGDLEEAERVLKQMTASGF------------VPDVAVFDSLIKGY 554

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
              G   +V++L   +   N     +I +++IR
Sbjct: 555 SAEGQTDKVLKLIHEMRAKNVAFDPKIISTIIR 587



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 68/161 (42%), Gaps = 7/161 (4%)

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D  SY+ ++   C+     + +  +R ++++  ++     +     P   +    + GLC
Sbjct: 82  DAVSYNTVLAALCRRGG--DHLRQARSLLVDMSREAHPAAR-----PNAVSYTTVMRGLC 134

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
            +    E + L  +++ S     V  + +LIRG C     + A EL +++    +  +VV
Sbjct: 135 ASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVV 194

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            Y+ L+    + G+ +    +   M   G   DV  F  L+
Sbjct: 195 VYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLI 235



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ + ++++I G C  G+++   QL++ M   G  P+  T   LI    + G++    ++
Sbjct: 472 LDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERV 531

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
            ++M          + P+V  + SLI G   +   D+   L  EM+ K +
Sbjct: 532 LKQMT------ASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAKNV 575


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 168/351 (47%), Gaps = 25/351 (7%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP   V++ +L++  C E     A  L++ M   G RP+V T  TLI GL    +++  +
Sbjct: 110 RP-TAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAV 168

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +L +EM        GI +PNV  Y  L+ G CK    +    +F EM  +GI  + +   
Sbjct: 169 ELLREMCES-----GI-EPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYT 222

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LC++ K+ +A ++++ MM+RGL P + TY  L+N  C  G V  A++L ++M  K
Sbjct: 223 GLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEK 282

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G   D  +Y+ LI G      ++EAM +  EMI               V P   T N  I
Sbjct: 283 GVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGE----------TMVEPNVVTFNSVI 332

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
            GLCK G + +  ++   +  + C   +  FN LI G  +    + A EL ++++   L 
Sbjct: 333 HGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLE 392

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            D   Y+ILI+   K  Q+ +   LL  M  +G   ++  +  L+ +  ++
Sbjct: 393 PDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQ 443



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 169/353 (47%), Gaps = 40/353 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL---RRTGNMNLTL 79
           + V++N+++   C +G   DA+  + ++     RP   +  TL+  L   RRTG     L
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-- 137
           +  Q          G+ +P+V  YG+LI GLC    VD+  +L  EM + GI  N ++  
Sbjct: 137 RDMQA--------SGV-RPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYS 187

Query: 138 ------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 CK  +    +++ E M  RG+ P +  YT L++  C  GKV  A  + D M  +
Sbjct: 188 CLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMER 247

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+V +Y+VLIN  CK  +V+EAM++   M+  G            V  +  T N  I
Sbjct: 248 GLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKG------------VALDAVTYNTLI 295

Query: 252 DGLCKNGHVLEVMELFPTLE-ISNCELFVE----IFNSLIRGCCKFGIFEIASELFNKLS 306
            GL     VLE+ E    LE + + E  VE     FNS+I G CK G    A ++ + ++
Sbjct: 296 TGL---SGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMA 352

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
                 ++V +N+LI  L +  ++KK   L+  M  +G   D  T++ L+  F
Sbjct: 353 ENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGF 405



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 166/360 (46%), Gaps = 45/360 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A       + R   P N VT+N LI   C EG++++A  L   M   G   +  T 
Sbjct: 233 KVKKATQVMDKMMERGLEP-NVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTY 291

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLITGL     M+  + L +EM++G      + +PNV  + S+I GLCK          
Sbjct: 292 NTLITGLSGVLEMDEAMGLLEEMIHG----ETMVEPNVVTFNSVIHGLCK---------- 337

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                              ++ +A ++ ++M + G    + T+  L+ G   V KV  A+
Sbjct: 338 -----------------TGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAM 380

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            L D MA  G  PD F+YS+LING+CK + V+ A     E +L+  ++   E +L + +P
Sbjct: 381 ELMDEMASSGLEPDSFTYSILINGFCKMWQVDRA-----ESLLSKMRRDGIEPELVHYIP 435

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
                   +  LC+ G + +    F  +   NC+L V  ++++I G C+    + A E  
Sbjct: 436 -------LLAALCEQGMMEQARNFFDEMH-KNCKLDVVAYSTMIHGACRLRDRKSAEEFL 487

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             +  + L+ D V Y++LI+     G +     +L  M  +G   DV  F++L+  +  K
Sbjct: 488 KHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAK 547



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 124/271 (45%), Gaps = 27/271 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFNS+I G C  G +R A Q+   MA  GC  N+ T + LI GL R   +   ++L 
Sbjct: 324 NVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELM 383

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
            EM +      G+ +P+ F Y  LI+G CK   VD+ + L  +M+  GI           
Sbjct: 384 DEMASS-----GL-EPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLL 437

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++  + +A    +  M +     +  Y+ +++G C +     A      M  +G +
Sbjct: 438 AALCEQGMMEQARNFFD-EMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLI 496

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +YS+LIN +  + ++  A  V ++M  +GF            VP+    +  I G 
Sbjct: 497 PDSVTYSMLINMFANSGDLGAAERVLKQMTASGF------------VPDVAVFDSLIKGY 544

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
              G   +V+EL   +   +  L  +I +++
Sbjct: 545 GAKGDTEKVLELIREMTAKDIALDSKIISTI 575


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 157/342 (45%), Gaps = 45/342 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    + +F   I  C  P +   FN L+  FC EG IR A  +   +  +G RP+V + 
Sbjct: 115 KYFKLVWSFYKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSF 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  + G+++   +L   M        G+ +P+V+ Y  LI+GLCK+  +D+   L
Sbjct: 175 NTLMNGYIKLGDLDEGFRLKSAM-----HASGV-QPDVYTYSVLINGLCKESKMDEAHKL 228

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           F EM D                           RGL P   T+T L++G+C  GK+++A+
Sbjct: 229 FDEMLD---------------------------RGLVPNGVTFTTLIDGHCKNGKLDLAM 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +GF PD  +Y+ LI G CK  ++ +A ++  EM + G K            P
Sbjct: 262 EIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLK------------P 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G CK G    A ++ 
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKML 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            ++    L  D   Y I++H   K G +K  + LL  M+ +G
Sbjct: 370 REMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDG 411



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 26/341 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 69  FSGLITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLKYFKLVWSFYKEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+D  CK+  +   + +F  +   G+       NTL+    
Sbjct: 129 ECR------YPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L E  RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  +G +P+  
Sbjct: 183 KLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  ++ AM + ++M+  GF             P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGKLDLAMEIYKQMLSQGFS------------PDXITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D V+Y 
Sbjct: 291 DLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            LI  L KEG+      +L  M   G   D  T+  +M  F
Sbjct: 351 ALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEF 391



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 13/227 (5%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ ++  A  + + + + GL P + ++  L+NGY  +G ++    L  +M   G  PD
Sbjct: 146 FCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPD 205

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V++YSVLING CK   ++EA             K+F+EM    +VP   T    IDG CK
Sbjct: 206 VYTYSVLINGLCKESKMDEA------------HKLFDEMLDRGLVPNGVTFTTLIDGHCK 253

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG +   ME++  +           +N+LI G CK G    A +L +++S K L  D + 
Sbjct: 254 NGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKIT 313

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y  LI    KEG ++        M +    LD D   T +IS L KE
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKRMIKENIRLD-DVSYTALISGLCKE 359



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 17/207 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  A   F   + R   P N VTF +LI G C  G +  A ++ K+M + G  P+  T
Sbjct: 220 SKMDEAHKLFDEMLDRGLVP-NGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXIT 278

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
            +TLI GL + G++     L  EM + G+       KP+   Y +LIDG CK+  ++   
Sbjct: 279 YNTLIYGLCKKGDLXQAKDLXDEMSMKGL-------KPDKITYTTLIDGSCKEGDLETAF 331

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +    M  + I  + +        LCK+ + V+A ++L  M+  GL P   TYT +++ +
Sbjct: 332 EYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEF 391

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFS 199
           C  G V +   L   M R G +P V +
Sbjct: 392 CKNGDVKMGSKLLKEMQRDGHVPCVIT 418


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 175/365 (47%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+   I+     G I +A +++K+M   GC P+V T   LI  L   G ++  ++L 
Sbjct: 263 NIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELF 322

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M          +KP+   Y +++D       + + K+ + EM+  G   + +      
Sbjct: 323 VKMK------ASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILV 376

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK   + EA  LL++M ++G+ P + TY  L++G   V +++ A+ LF++M   G +
Sbjct: 377 NALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVV 436

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
           P  ++Y + I+ Y K+   ++A+    +M + G                        K I
Sbjct: 437 PTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVI 496

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           FN +K   + P++ T N+ +    K G V E +EL   +  + CE  + + NSLI    K
Sbjct: 497 FNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYK 556

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  + A ++F +L    L   VV YN LI  LGKEGQ+++   L  SM  NGC  +  T
Sbjct: 557 AGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTIT 616

Query: 352 FNTLM 356
           FNT++
Sbjct: 617 FNTIL 621



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 151/332 (45%), Gaps = 27/332 (8%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P + +TF  L+   C  GNI +A  L+  M   G  PN+ T +TLI+GL R   ++  
Sbjct: 365 YAP-DVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDA 423

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138
           L    ++ N M   G +  P  + Y   ID   K    D+  + F +MK +GI  N + C
Sbjct: 424 L----DLFNNMETLGVV--PTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVAC 477

Query: 139 KKT--------KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
             +        +L EA  +   +   GL P   TY  ++  Y   G+V+ AI L   M+ 
Sbjct: 478 NASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSE 537

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
               PD+   + LIN   K   V+EA             K+F  +K   + P   T N  
Sbjct: 538 NQCEPDIIVINSLINTLYKAGRVDEAW------------KMFCRLKDMKLAPTVVTYNTL 585

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           I GL K G V   MELF ++  + C      FN+++   CK    ++A ++  K++  N 
Sbjct: 586 IAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNC 645

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           + DV+ +N +IH L  E ++    +L   M++
Sbjct: 646 MPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKK 677



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 152/340 (44%), Gaps = 30/340 (8%)

Query: 26   TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            ++N LI+GF    N   A  L  +M   GC P+V T + L+    ++G +N   +L+++M
Sbjct: 792  SYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQM 851

Query: 86   VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            +          KPN   +  +I  L K   +D+  DLF ++     +            L
Sbjct: 852  ICSSC------KPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGL 905

Query: 138  CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
             K  +L EA  L E M+  G  P    Y  L+NG+   G VN A  LF  M R+G  PD+
Sbjct: 906  LKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDL 965

Query: 198  FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             SY+ L+   C+   V++A++             F ++K   +  ++   N+ IDGL ++
Sbjct: 966  KSYTSLVGCLCEAGRVDDALHY------------FEKLKQTGLYLDSIAYNLMIDGLGRS 1013

Query: 258  GHVLEVMELFPTLEIS--NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
              + E + L+  ++    N +LF   +NSLI      G+ E A +L+ +L    L  +V 
Sbjct: 1014 HRIEEALTLYDEMQSRGINPDLFT--YNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVF 1071

Query: 316  AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
             YN LI      G       +   M   GC+ +  TF  L
Sbjct: 1072 TYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 150/350 (42%), Gaps = 28/350 (8%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           R LN  T+  + KG  + G +R       KM   G   N  + + LI  L ++G     L
Sbjct: 157 RDLN--TYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGLCREAL 214

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---- 135
           ++++ MV       G+ KP++  + +L+    K R  +  K L  EM+  G+  N     
Sbjct: 215 EMYRRMV-----LEGL-KPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYT 268

Query: 136 ----LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
               +L +  ++ EA R+++ M   G  P + TYT L++  C  GK++ A+ LF  M   
Sbjct: 269 ICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKAS 328

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
              PD  +Y  +++ +    +            L   K+ ++EM+     P+  T  I +
Sbjct: 329 SHKPDRVTYITMLDKFSDCGD------------LGRVKEFWSEMEADGYAPDVITFTILV 376

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           + LCK G++ E   L   +        +  +N+LI G  +    + A +LFN +    +V
Sbjct: 377 NALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVV 436

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
                Y + I   GK G+  K       M+  G A ++   N  + S  +
Sbjct: 437 PTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAE 486



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 169/375 (45%), Gaps = 47/375 (12%)

Query: 25   VTFNSLIKGFCMEGNIRDASQL---VKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            +TFN++I G  +E  + DA  L   +KKM T  C   VT C TL+ G+ + G M    K+
Sbjct: 650  LTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTPDC---VTLC-TLLPGVVKNGLMEDAFKI 705

Query: 82   HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-------KDKGINAN 134
             ++ V+ +G    +Y    F +  L+ G+      ++T  LF +        KD  +   
Sbjct: 706  AEDFVHRLG----VYVDRRF-WEDLMGGILTQAGTEKTI-LFGDRLVCGRVCKDGSVLMP 759

Query: 135  TL--LCK-KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
             +  LCK K  LV  +  +    + G+ P + +Y  L+ G+  V    +A  LF  M   
Sbjct: 760  IIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNA 819

Query: 192  GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK--IFNEMKLCNVV-------- 241
            G  PDVF+Y++L++ + K+  + E   +  +MI +  K   I + + + N+V        
Sbjct: 820  GCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKA 879

Query: 242  -------------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                         P   T    +DGL K+G + E  ELF  +    C     I+N LI G
Sbjct: 880  LDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILING 939

Query: 289  CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
              K G    A ELF ++  + +  D+ +Y  L+  L + G++    +    +++ G  LD
Sbjct: 940  FGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLD 999

Query: 349  VDTFNTLMISFLQKE 363
               +N LMI  L + 
Sbjct: 1000 SIAYN-LMIDGLGRS 1013



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 162/373 (43%), Gaps = 42/373 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N ++K +   G + +A +L+  M+   C P++   ++LI  L + G ++   K+ 
Sbjct: 508 DSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMF 567

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             + +          P V  Y +LI GL K+  V +  +LF  M   G   NT+      
Sbjct: 568 CRLKDMK------LAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTIL 621

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++  A ++L  M      P + T+  +++G  +  +V+ AI LF  M +K   
Sbjct: 622 DCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQM-KKMLT 680

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILN---------------------GFKK--I 231
           PD  +   L+ G  KN  +E+A  ++ + +                       G +K  +
Sbjct: 681 PDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTIL 740

Query: 232 FNEMKLC-NVVPETFTCNIFIDGLCKNGHVLEVMELFP--TLEISNCELFVEIFNSLIRG 288
           F +  +C  V  +       I  LCK+   L    +F   T E+   +  +E +N LI G
Sbjct: 741 FGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELG-VKPTLESYNFLIEG 799

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
                  E+A  LF ++       DV  YN+L+ A GK G+I +   L   M  + C  +
Sbjct: 800 FLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPN 859

Query: 349 VDTFNTLMISFLQ 361
             T N ++ + ++
Sbjct: 860 TITHNIIIANLVK 872



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 34/208 (16%)

Query: 20   RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
            RP N+  +N LI GF   G++  A +L K+M   G RP++ +  +L+  L   G ++  L
Sbjct: 927  RP-NNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDAL 985

Query: 80   KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139
               +++        G+Y  ++  Y  +IDGL +   +++   L+ EM+            
Sbjct: 986  HYFEKLKQ-----TGLYLDSI-AYNLMIDGLGRSHRIEEALTLYDEMQ------------ 1027

Query: 140  KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
                            RG+NP +FTY  L+    + G V  A  L++ +   G  P+VF+
Sbjct: 1028 ---------------SRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFT 1072

Query: 200  YSVLINGYCKNFNVEEAMNVSREMILNG 227
            Y+ LI GY  + N + A  V + M++ G
Sbjct: 1073 YNALIRGYSMSGNSDSAYAVYKRMMVGG 1100



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 89/227 (39%), Gaps = 27/227 (11%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           +++R LN    TY  +  G  + G +      F  M   GF  + +SY+ LI+   ++  
Sbjct: 154 IIKRDLN----TYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGL 209

Query: 213 VEEAMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNI 249
             EA+ + R M+L G                        K +  EM+   + P  +T  I
Sbjct: 210 CREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTI 269

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            I  L + G + E   +   +E   C   V  +  LI   C  G  + A ELF K+   +
Sbjct: 270 CIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASS 329

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              D V Y  ++      G + +       ME +G A DV TF  L+
Sbjct: 330 HKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILV 376



 Score = 39.3 bits (90), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
            N  T+N+LI+G+ M GN   A  + K+M   GC PN  T
Sbjct: 1069 NVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGT 1107


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 171/364 (46%), Gaps = 32/364 (8%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG-- 68
           +   IRR  +P N  TFN +I   C  G +  A  +++ M  +GC PNV + +TLI G  
Sbjct: 211 YKEMIRRKIQP-NVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYC 269

Query: 69  -LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
            L   G M     + +EMV           PN+  +  LIDG  KD  +  +  +F EM 
Sbjct: 270 KLGGNGKMYKADAVLKEMVE------NDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEML 323

Query: 128 DKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
           D+ +  N +        LC   K+ EA  + + M+  G+ P + TY  L+NG+C    + 
Sbjct: 324 DQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLK 383

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
            A+ +F S+  +G +P    Y++LI+ YCK   +++   +  EM   G            
Sbjct: 384 EALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG------------ 431

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           +VP+  T N  I GLC+NG++    +LF  L        V  F+ L+ G C+ G    A+
Sbjct: 432 IVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLV-TFHILMEGYCRKGESRKAA 490

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME-ENGCALDVDTFNTLMIS 358
            L  ++S   L    + YNI++    KEG +K    +   ME E    ++V ++N L+  
Sbjct: 491 MLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQG 550

Query: 359 FLQK 362
           + QK
Sbjct: 551 YSQK 554



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 166/334 (49%), Gaps = 31/334 (9%)

Query: 23  NDVTFNSLIKGFCM---EGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           N V++N+LI G+C     G +  A  ++K+M      PN+TT + LI G  +  N+  ++
Sbjct: 257 NVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSM 316

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           K+ +EM++         KPNV  Y SLI+GLC    + +   +  +M   G+  N +   
Sbjct: 317 KVFKEMLDQ------DVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYN 370

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 CK   L EA  +   +  +G  P    Y  L++ YC +GK++   AL + M R+
Sbjct: 371 ALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMERE 430

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G +PDV +Y+ LI G C+N N+E A            KK+F+++     +P+  T +I +
Sbjct: 431 GIVPDVGTYNCLIAGLCRNGNIEAA------------KKLFDQLT-SKGLPDLVTFHILM 477

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC-KNL 310
           +G C+ G   +   L   +     +     +N +++G CK G  + A+ +  ++   + L
Sbjct: 478 EGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRL 537

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             +V +YN+L+    ++G+++  N LL  M E G
Sbjct: 538 RMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKG 571



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 173/366 (47%), Gaps = 36/366 (9%)

Query: 9   MAFGSFIRRCYR--PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           + F +F R  Y    L+ ++   L+     E    D   + K+M     +PNV T + +I
Sbjct: 171 LGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVI 230

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIY--KPNVFCYGSLIDGLCK---DRLVDQTKD 121
             L +TG MN    + ++M         +Y   PNV  Y +LIDG CK   +  + +   
Sbjct: 231 NALCKTGKMNKARDVMEDM--------KVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADA 282

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           +  EM +  ++ N            K   L  + ++ + M+ + + P + +Y  L+NG C
Sbjct: 283 VLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLC 342

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             GK++ AI++ D M   G  P++ +Y+ LING+CKN  ++EA++            +F 
Sbjct: 343 NGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALD------------MFG 390

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            +K    VP T   N+ ID  CK G + +   L   +E       V  +N LI G C+ G
Sbjct: 391 SVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNG 450

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A +LF++L+ K L  D+V ++IL+    ++G+ +K   LL  M + G      T+N
Sbjct: 451 NIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYN 509

Query: 354 TLMISF 359
            +M  +
Sbjct: 510 IVMKGY 515



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 17/206 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  FGS   +   P   + +N LI  +C  G I D   L ++M   G  P+V T + LI
Sbjct: 385 ALDMFGSVKGQGAVPTTRM-YNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLI 443

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL R GN+    KL  ++ +      G+  P++  +  L++G C+     +   L  EM
Sbjct: 444 AGLCRNGNIEAAKKLFDQLTSK-----GL--PDLVTFHILMEGYCRKGESRKAAMLLKEM 496

Query: 127 KDKGINANTL--------LCKKTKLVEA-NRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
              G+    L         CK+  L  A N   ++  +R L   + +Y  LL GY   GK
Sbjct: 497 SKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGK 556

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVL 203
           +  A  L + M  KG +P+  +Y ++
Sbjct: 557 LEDANMLLNEMLEKGLVPNRITYEIV 582


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 163/354 (46%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EGNIR A  +   +  +G RP+V + 
Sbjct: 104 KYFKLVWGFYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSY 163

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL++G  R G+++   +L   M        G+ +P+V+ Y  LI+GLCK+         
Sbjct: 164 NTLMSGYIRLGDLDEGFRLKSAM-----HASGV-QPDVYTYSVLINGLCKE--------- 208

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                              K+ EAN L + M+  GL P   T+T L++G+C  G+V++A+
Sbjct: 209 ------------------XKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAM 250

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  B+++A  +  EM L G K            P
Sbjct: 251 EIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXK------------P 298

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 299 DKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKML 358

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++       D   Y ++I+   K+G +   + LL  M+ +G    V T+N LM
Sbjct: 359 REMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 155/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    +QE++
Sbjct: 58  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYQEIL 117

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLCKKT 141
                    Y  +++ +  L+   CK+  +   + +F  +   G     ++ NTL+    
Sbjct: 118 ECG------YPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYI 171

Query: 142 KL---VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +L    E  RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M   G +P   
Sbjct: 172 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGV 231

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK G
Sbjct: 232 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNTLIYGLCKKG 279

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 280 BLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT 339

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 340 ALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKK 383



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 16/191 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + GB+     L  E
Sbjct: 231 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXE 290

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           M + G        KP+   Y +LIDG CK+  +D   +    M  + I  + +       
Sbjct: 291 MSLKGX-------KPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 343

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LC++ + V+A ++L  M+  G  P   TYT ++N +C  G V     L   M R G +P
Sbjct: 344 GLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVP 403

Query: 196 DVFSYSVLING 206
            V +Y+VL+NG
Sbjct: 404 SVVTYNVLMNG 414


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 161/340 (47%), Gaps = 25/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            T+N+L+  +   G I+ A+ +V+ M  FG  P++ T + L  GL + G ++   KL  E
Sbjct: 280 ATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDE 339

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     +  GI  P+V  Y +L+D   K +      +L  EM++KG+ ++ +        
Sbjct: 340 M-----EQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKG 394

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC++ +L EA   LE+M + GL P + TY  L++  C  G V  A  L D M R G   D
Sbjct: 395 LCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMD 454

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            F+ + L+   CK    EEA  + R     GF  + +E+    V+   F        LC 
Sbjct: 455 TFTLNTLLYNLCKEKRYEEAEELLRAPPQRGF--VPDEVSYGTVMAAYFKEYKPEPALCL 512

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              +++  +L P+         +  +N+LI+G    G    A +  N+L    LV D   
Sbjct: 513 WDEMIK-RKLTPS---------ISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTT 562

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YNI+IHA  KEG ++K       M EN    DV T NTLM
Sbjct: 563 YNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLM 602



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 163/328 (49%), Gaps = 26/328 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N ++KG C EG + +A   ++ M   G  P+V T +TLI    + GN+     L  E
Sbjct: 386 VTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDE 445

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLC- 138
           MV       G+ K + F   +L+  LCK++  ++ ++L      +G     ++  T++  
Sbjct: 446 MVRS-----GL-KMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAA 499

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K+ K   A  L + M++R L P I TY  L+ G   +GK+  AI   + +   G +PD
Sbjct: 500 YFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPD 559

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+++I+ YCK  ++E+A     +M+ N FK            P+  TCN  ++GLC 
Sbjct: 560 DTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFK------------PDVVTCNTLMNGLCL 607

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + + M+LF +      ++ V  +N+LI+  CK    + A   F  +  + L  DV  
Sbjct: 608 YGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFT 667

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
           YN+L+ AL + G+  +   +L  + E+G
Sbjct: 668 YNVLLSALSEAGRSVEAQKMLHKLNESG 695



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 142/324 (43%), Gaps = 26/324 (8%)

Query: 43  ASQLVKKMATFGC-RPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIY-KPNV 100
           A+QL+      GC RP++   + +++ L R+ + +      Q  ++       +   PN 
Sbjct: 155 AAQLLHSFRRRGCVRPSLQAANAVLSALARSPSTS-----PQASLDAFHSLIALRLHPNH 209

Query: 101 FCYGSLIDGLCK-----DRLVDQTKDLFMEMKDKGINANTLL---CKKTKLVEANRLLEL 152
           + +  L+   C      D L   +K     +    +  NTLL   C+K  L EA  LL  
Sbjct: 210 YTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLAR 269

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M + G+ P   TY  L++ Y  +G +  A  + ++M   GF PD+++Y+VL  G C+   
Sbjct: 270 MKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGK 329

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           V+EA  +  EM   G            V P+  T N  +D   K     + + L   +  
Sbjct: 330 VDEAFKLKDEMEQLGI-----------VSPDVVTYNTLVDACFKCQRSSDALNLLEEMRE 378

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              +  +   N +++G C+ G  E A      ++ + L  DV+ YN LI A  K G + K
Sbjct: 379 KGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAK 438

Query: 333 ENYLLLSMEENGCALDVDTFNTLM 356
              L+  M  +G  +D  T NTL+
Sbjct: 439 AFVLMDEMVRSGLKMDTFTLNTLL 462



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 97/231 (41%), Gaps = 50/231 (21%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +D T+N +I  +C EG++  A Q   KM     +P+V TC+TL+ GL   G +   +KL 
Sbjct: 559 DDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLF 618

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
           +  V          K +V  Y +LI  LCKD  VD     F +M+ +G+  +        
Sbjct: 619 ESWVEKGK------KVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLL 672

Query: 135 TLLCKKTKLVEANRLLELM---------------------MQRGLNPVI----------- 162
           + L +  + VEA ++L  +                     ++ G +P +           
Sbjct: 673 SALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVETGKDPEVKSDIESVGNTQ 732

Query: 163 ----FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
                +Y   +   C+ G++  A A+ D M +KG   D  +Y  L+ G  K
Sbjct: 733 GDDQESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTYITLMEGLIK 783


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 167/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 225

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 226 ------------------SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 268 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 316 DKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 376 REMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 158/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +          + TC  ++  L +     L    ++E++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 135 ECG------YPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 297 DLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 16/193 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G++     L 
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLI 305

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM V G+       KP+   Y +LIDG CK+  +D   +    M  + I  + +     
Sbjct: 306 DEMSVKGL-------KPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTAL 358

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 194 MPDVFSYSVLING 206
           +P V +Y+VL+NG
Sbjct: 419 VPSVVTYNVLMNG 431


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 158/330 (47%), Gaps = 27/330 (8%)

Query: 24  DVTF-NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           DVT   +L+ G C  G++ +A ++  +M   G  PN  T   L+ G    G       L 
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL- 136
           +EM  G     G+ +PN++ Y  LI   C+    ++ + LF EM  +GI     + NTL 
Sbjct: 97  EEMRRG-----GV-EPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLI 150

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  KL +A +LL++M   G  P I T+  L++GY   GK++ A+  F+ M   GF 
Sbjct: 151 AGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQ 210

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P   +Y++LI G+C+  ++  A             +  ++MK   + P   T  I ID  
Sbjct: 211 PSAVTYNMLIAGFCRARDMTRA------------NRALSDMKERGLEPTKVTYTILIDSF 258

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            +  H+ +  E+   +E +  E+    +  L+R  C  G  + A +LF  +  K +    
Sbjct: 259 ARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSN 318

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENG 344
           V Y+++I+  G+EG   K   L++ M + G
Sbjct: 319 VIYDMMIYGYGREGSSYKALKLIMEMRQKG 348



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 12/225 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK   + EA R+ + M   GL P   TYT L++GY   G+     ALF+ M R G  P++
Sbjct: 49  CKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNL 108

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           ++Y+ LI  +C+    E A            + +F+EM +  +V    + N  I GLC++
Sbjct: 109 YTYNCLIGEWCRTGEFERA------------RSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + +  +L   +        +  FN L+ G  K G    A   FN++         V Y
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTY 216

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N+LI    +   + + N  L  M+E G      T+  L+ SF ++
Sbjct: 217 NMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARE 261



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 121/272 (44%), Gaps = 26/272 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++N+LI G C  G + DA++L+  M T G RP++ T + L+ G  + G M+  L   
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFF 201

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M          ++P+   Y  LI G C+ R + +      +MK++G+    +      
Sbjct: 202 NQMK------AAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILI 255

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               ++  + +A  +L  M + GL     TY  L+   C+ G +  A  LF SM  KG  
Sbjct: 256 DSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVE 315

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P    Y ++I GY +  +  +A+            K+  EM+   ++P + +  + I  L
Sbjct: 316 PSNVIYDMMIYGYGREGSSYKAL------------KLIMEMRQKGLIPNSASYGLTIRVL 363

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
           CK+    E   L   +  +  +    I  +L+
Sbjct: 364 CKDDKCQEAEALLDDMVRAGLQTSESICQALL 395



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 173 CLVGKVNVAIALFDSMARKGFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           C  G V  A+A+     + G    DV + + L+NG CK  +V EA            +++
Sbjct: 13  CAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEA------------RRV 60

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F+EM L  + P   T    + G   +G   +   LF  +     E  +  +N LI   C+
Sbjct: 61  FDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCR 120

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G FE A  LF+++  + +V +VV+YN LI  L + G++     LL  M   G    + T
Sbjct: 121 TGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIIT 180

Query: 352 FNTLMISF 359
           FN L+  +
Sbjct: 181 FNLLVDGY 188



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 12/194 (6%)

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L+NG C  G V  A  +FD M   G  P+  +Y+ L++GY  +   E+          
Sbjct: 42  TALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREK---------- 91

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
            GF  +F EM+   V P  +T N  I   C+ G       LF  + +      V  +N+L
Sbjct: 92  -GFA-LFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTL 149

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G C+ G    A++L + +  +     ++ +N+L+   GK G++         M+  G 
Sbjct: 150 IAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGF 209

Query: 346 ALDVDTFNTLMISF 359
                T+N L+  F
Sbjct: 210 QPSAVTYNMLIAGF 223


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 163/343 (47%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N++++  C  G ++ A +++ +M    C P+V T   LI    R   +   +KL  E
Sbjct: 205 VTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDE 264

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     D G    P+V  Y  L++G+CK+  +D+      +M   G   N +        
Sbjct: 265 MR----DRG--CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRS 318

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C   + ++A +LL  M+++G +P + T+  L+N  C  G +  AI + + M + G  P+
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY+ L++G+CK   ++ A+     M+  G              P+  T N  +  LCK
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMVSRG------------CYPDIVTYNTMLTALCK 426

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V + +E+   L    C   +  +N++I G  K G    A +L +++  K+L  D + 
Sbjct: 427 DGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTIT 486

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y+ L+  L +EG++ +        E  G   +  TFN++M+  
Sbjct: 487 YSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGL 529



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 154/343 (44%), Gaps = 23/343 (6%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L DV  N+ ++     G + +  + ++ M   G  P++  C TLI G  R G      K+
Sbjct: 100 LEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKI 159

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTLL-- 137
             E++ G G       P+V  Y  +I G CK   ++    +   M +    +  NT+L  
Sbjct: 160 -LEILEGSGAV-----PDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRS 213

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C   KL +A  +L+ M+QR   P + TYT L+   C    V  A+ L D M  +G  PD
Sbjct: 214 LCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPD 273

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+VL+NG CK   ++EA+            K  N+M      P   T NI +  +C 
Sbjct: 274 VVTYNVLVNGICKEGRLDEAI------------KFLNDMPSSGCQPNVITHNIILRSMCS 321

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G  ++  +L   +        V  FN LI   C+ G+   A ++  K+       + ++
Sbjct: 322 TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLS 381

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           YN L+H   KE ++ +    L  M   GC  D+ T+NT++ + 
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 165/354 (46%), Gaps = 41/354 (11%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R CY  +  +T+  LI+  C +  +  A +L+ +M   GC P+V T + L+ G+ + G +
Sbjct: 233 RDCYPDV--ITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINAN 134
           +  +K     +N M   G   +PNV  +  ++  +C   R +D  K L  +M  KG + +
Sbjct: 291 DEAIKF----LNDMPSSG--CQPNVITHNIILRSMCSTGRWMDAEK-LLADMLRKGFSPS 343

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +        LC+K  L  A  +LE M Q G  P   +Y PLL+G+C   K++ AI   +
Sbjct: 344 VVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFK--- 229
            M  +G  PD+ +Y+ ++   CK+  VE+A+ +  ++              +++G     
Sbjct: 404 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

Query: 230 ------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                 K+ +EM+  ++ P+T T +  + GL + G V E ++ F   E          FN
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFN 523

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
           S++ G CK    + A +    +  +    +  +Y ILI  L  EG  K+   LL
Sbjct: 524 SIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELL 577



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 141/332 (42%), Gaps = 49/332 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N L+ G C EG + +A + +  M + GC+PNV T + ++  +  TG      KL  +
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLAD 334

Query: 85  MVNG------------------MGDFGGIY-----------KPNVFCYGSLIDGLCKDRL 115
           M+                     G  G              +PN   Y  L+ G CK++ 
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK 394

Query: 116 VDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           +D+  +    M  +G     +  NT+L   CK  K+ +A  +L  +  +G +PV+ TY  
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +++G    GK   AI L D M  K   PD  +YS L+ G  +   V+EA+          
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI---------- 504

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
             K F+E +   + P   T N  + GLCK+      ++    +    C+     +  LI 
Sbjct: 505 --KFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIE 562

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           G    G+ + A EL N+L  K L+    A  +
Sbjct: 563 GLAYEGMAKEALELLNELCNKGLMKKSSAEQV 594



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 50/273 (18%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T + + A       +R+ + P + VTFN LI   C +G +  A  +++KM   GC+PN  
Sbjct: 322 TGRWMDAEKLLADMLRKGFSP-SVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           + + L+ G  +   M+  ++  + MV+      G Y P++  Y +++  LCKD  V+   
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSR-----GCY-PDIVTYNTMLTALCKDGKVEDAV 434

Query: 121 DLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           ++  ++  KG     I  NT+   L K  K  +A +LL+ M  + L P   TY+ L+ G 
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGL 494

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVF---------------------------------- 198
              GKV+ AI  F    R G  P+                                    
Sbjct: 495 SREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNE 554

Query: 199 -SYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
            SY++LI G       +EA+ +  E+   G  K
Sbjct: 555 TSYTILIEGLAYEGMAKEALELLNELCNKGLMK 587


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 165/354 (46%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EG+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M        G++ P+V+ Y  LI+GLCK+  +D    L
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAM-----HASGVH-PDVYTYSVLINGLCKESKMDDANKL 234

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           F EM +KG+  N++                           T+T L++G+C  G V++A+
Sbjct: 235 FDEMLEKGLVPNSV---------------------------TFTTLIDGHCKNGWVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 268 EIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 316 DKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 376 REMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 159/345 (46%), Gaps = 28/345 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           F+ LI  +   G +RDA    +       C P   TC  ++  L +     L    ++E+
Sbjct: 75  FSGLITAYLELGFLRDAIDCYRLTREHKFCVP-FDTCRKVLEHLMKLKYFKLVWGFYEEI 133

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           +         Y  +++ +  L+   CK+  +   + +F  +   G     ++ NTL+   
Sbjct: 134 LECG------YPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGY 187

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            +   L E  RL   M   G++P ++TY+ L+NG C   K++ A  LFD M  KG +P+ 
Sbjct: 188 IRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNS 247

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK 
Sbjct: 248 VTFTTLIDGHCKNGWVDLAMEIYKQMLSQ------------SLLPDLVTYNALIYGLCKK 295

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + +  +L   + +   +     + +LI GCCK G  + A E    +  +N+  D VAY
Sbjct: 296 GDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAY 355

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKK 400



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 13/227 (5%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+  +  A  + + + + GL P + +Y  L+NGY  +G ++    L  +M   G  PD
Sbjct: 152 FCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPD 211

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V++YSVLING CK   +++A             K+F+EM    +VP + T    IDG CK
Sbjct: 212 VYTYSVLINGLCKESKMDDA------------NKLFDEMLEKGLVPNSVTFTTLIDGHCK 259

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG V   ME++  +   +    +  +N+LI G CK G  + A +L +++S   L  D + 
Sbjct: 260 NGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKIT 319

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y  LI    KEG +         M +    LD D   T +IS L +E
Sbjct: 320 YTTLIDGCCKEGDLDTAFEHRKMMIQENIRLD-DVAYTALISGLCQE 365



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T + LI GL + G+    LK  
Sbjct: 246 NSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGD----LKQA 301

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++++ M   G   KP+   Y +LIDG CK+  +D   +    M  + I  + +      
Sbjct: 302 HDLIDEMSMXG--LKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALI 359

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G +
Sbjct: 360 SGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 420 PSVVTYNVLMNG 431


>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
          Length = 466

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 167/354 (47%), Gaps = 37/354 (10%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           RC  P N+VTF + I+ FC  G +  A QL+ +M  +GC P+V    TLI G    G+++
Sbjct: 37  RC--PPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVD 94

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-- 134
             L L   M         + KPN  CY + + GLC     +   +L  EM  KG + N  
Sbjct: 95  QALDLLNTM---------LCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEA 145

Query: 135 ------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                 + LC+   +  A  +LE M + G  P    Y  ++N     G+V+ A+ L +SM
Sbjct: 146 TFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM 205

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             K   PD   ++ ++ G+C+     E  + + E+I   F+        C ++  TF  N
Sbjct: 206 VCK---PDALGFNAVLKGFCR----AERWHDASELIAQMFRDD------CPLIEMTF--N 250

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           I ID LC+NG V    ++F  +    C   +  ++SL+ G  + G+ E+A +LF  + CK
Sbjct: 251 ILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCK 310

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
               D+ +YN ++  L +  + +    L+  M    C  +  TFN L+ S  QK
Sbjct: 311 ---PDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQK 361



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 166/359 (46%), Gaps = 44/359 (12%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           +G LMA    +R+   P N+ TF+ LI   C    +  A +++++M  +GC P+    + 
Sbjct: 128 IGELMA--EMVRKGCSP-NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNI 184

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           +I  L   G ++  L+L   MV          KP+   + +++ G C+        +L  
Sbjct: 185 IINSLSERGRVDDALRLLNSMV---------CKPDALGFNAVLKGFCRAERWHDASELIA 235

Query: 125 EM--KDKGINANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           +M   D  +   T      +LC+   +  A ++ E M +    P I TY+ LLNG+   G
Sbjct: 236 QMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQG 295

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
            V VAI LF SM  K   PD+FSY+ ++ G C+    E+A  +  EM+            
Sbjct: 296 LVEVAIQLFRSMPCK---PDIFSYNAVLKGLCRAARWEDAGELIAEMVGK---------- 342

Query: 237 LCNVVPETFTCNIFIDGLCKNGHV---LEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
             +  P   T NI I+ LC+ G V   +EV+E  P    S  ++F   +N+LI G  + G
Sbjct: 343 --DCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYG-STPDIFT--YNALINGFSEQG 397

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             + A +L + +SCK    D ++YN  +  L +  + +    L+  M  N C  +  TF
Sbjct: 398 RLDDALKLLSTMSCK---PDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 453



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 18/204 (8%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P   T+   +  +C  G ++ A+ L D M R G  PDV  YS LING+ +  +V++A+++
Sbjct: 40  PNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDL 99

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
              M             LC   P T   N  + GLC      ++ EL   +    C    
Sbjct: 100 LNTM-------------LCK--PNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNE 144

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             F+ LI   C+  + + A E+  ++       D V YNI+I++L + G++     LL S
Sbjct: 145 ATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNS 204

Query: 340 MEENGCALDVDTFNTLMISFLQKE 363
           M    C  D   FN ++  F + E
Sbjct: 205 MV---CKPDALGFNAVLKGFCRAE 225



 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%)

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           V P+T+T N  + GLC      E  EL   +  + C      F + IR  C+ G+ + A 
Sbjct: 3   VAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAV 62

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
           +L +++       DVV Y+ LI+   ++G + +   LL +M
Sbjct: 63  QLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM 103


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 168/347 (48%), Gaps = 28/347 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N++I G+C  G +  A  L+K+M      PN  T + LI G  R  N+    K+ +E
Sbjct: 265 ITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEE 324

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           M   G+       +PNV  Y SLI+GLC +  +D+   L  +M   G+  N +       
Sbjct: 325 MQRQGL-------QPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN 377

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             CKK  L EA  +L+ + +RGL P + T+  L++ Y   G+++ A  L   M   G  P
Sbjct: 378 GFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           +V +Y+ LI G+C+  NV+EA  +++EM  NG K             +  T NI +D LC
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLK------------ADLVTYNILVDALC 485

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G   + + L   +           +N+LI G  + G    A  +   +  K   A++V
Sbjct: 486 KKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIV 545

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            YN+LI     +G++++ N LL  M E G   +  T++ L    ++K
Sbjct: 546 TYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEK 592



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 174/372 (46%), Gaps = 32/372 (8%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFN---SLIKGFCMEGNIRDAS--QLVKKMATFGC 55
           T K  GA+     F R  +   N   +N   +L+  F    +  +++    +  + ++GC
Sbjct: 97  TQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGC 156

Query: 56  RPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL 115
             N    D L+    + G M+L L    E  +  GD+G  ++ +      ++  L K+  
Sbjct: 157 -ANSIIVDMLVWAYVKNGEMDLAL----EGFDRAGDYG--FRLSALSCNPMLVSLVKEGR 209

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           +   + ++ EM  + I  N +        LCK  K  +A  ++E M   G +P + TY  
Sbjct: 210 IGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNT 269

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +++GYC  GK+  A AL   M  K   P+  ++++LI+G+C++ NV  A           
Sbjct: 270 IIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAA----------- 318

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
            KK+F EM+   + P   T N  I+GLC NG + E + L   +     +  V  +N+LI 
Sbjct: 319 -KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN 377

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G CK  + + A E+ + +  + L  +V+ +N LI A GK G++     L   M + G   
Sbjct: 378 GFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437

Query: 348 DVDTFNTLMISF 359
           +V T+N L++ F
Sbjct: 438 NVSTYNCLIVGF 449



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 26/249 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI GFC +  +++A +++  +   G  PNV T +TLI    + G M+    L 
Sbjct: 368 NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLR 427

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             M++      G+  PNV  Y  LI G C++  V + + L  EM+  G+ A+ +      
Sbjct: 428 SMMLDT-----GVC-PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILV 481

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCKK +  +A RLL+ M + GLNP   TY  L++GY   G    A+ +   M +KG  
Sbjct: 482 DALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRR 541

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            ++ +Y+VLI G+C    +EEA             ++ NEM    ++P   T +I  D +
Sbjct: 542 ANIVTYNVLIKGFCNKGKLEEA------------NRLLNEMLEKGLIPNRTTYDILRDEM 589

Query: 255 CKNGHVLEV 263
            + G + ++
Sbjct: 590 MEKGFIPDI 598



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 12/197 (6%)

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
           P+L      G++ V  +++  M R+    +V ++ V+ING CK    ++A +V  +M   
Sbjct: 199 PMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAW 258

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
           GF             P   T N  IDG CK G + +   L   +           FN LI
Sbjct: 259 GFS------------PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILI 306

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G C+      A ++F ++  + L  +VV YN LI+ L   G++ +   L   M   G  
Sbjct: 307 DGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLK 366

Query: 347 LDVDTFNTLMISFLQKE 363
            +V T+N L+  F +K+
Sbjct: 367 PNVVTYNALINGFCKKK 383



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           R  N VT+N LIKGFC +G + +A++L+ +M   G  PN TT D L
Sbjct: 540 RRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 184/395 (46%), Gaps = 42/395 (10%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCM----EGNIRDASQLVKKMATFGCRP 57
           ++V G  + F   I+   RP N  T+  ++  FC       +IR AS+++ K+   G  P
Sbjct: 185 NRVDGVRLLFEVLIKFGPRP-NIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETP 243

Query: 58  NVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD 117
           NV T  T I GL + G   +  +L Q +             N  C+ ++I GLC+  ++D
Sbjct: 244 NVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPL------NNHCFNAVIYGLCQGGILD 297

Query: 118 QTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           +  ++F EMK+ GI  +           C+K ++ +A+ + + M   G+ P I++Y+ L+
Sbjct: 298 EASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILI 357

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           +G+C  G+V+ A+ +F+ M   G +PDV+SYS+LI+G+C+  +++ A+    EM  N F 
Sbjct: 358 DGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFS 417

Query: 230 -----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
                                  K F  M+   + P+T  CN  +   C+     + + L
Sbjct: 418 PSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALAL 477

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
               + +        +N  I   C+  + E A +L   +  +N++ DVV Y+ LI    K
Sbjct: 478 SEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAK 537

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
               +K   L + M + G   +V T+  L+  F+ 
Sbjct: 538 RLNSEKAVMLFIKMTKVGITFNVKTYTILINLFIS 572



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 164/373 (43%), Gaps = 37/373 (9%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           +PLN+  FN++I G C  G + +AS++ K+M   G  P+V +   LI G  R G ++   
Sbjct: 276 QPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQAS 335

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           ++ +EM N      GI  PN++ Y  LIDG CK+  VD+  ++F EMK+ GI  +     
Sbjct: 336 EVFKEMRNS-----GIL-PNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYS 389

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 C+K  +  A +  E M     +P  F Y  L+ GY    +   A+  F  M + 
Sbjct: 390 ILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKL 449

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---KIFNEM--KLC-------- 238
           G  PD  + + +++ YC+  +  +A+ +S +   NG       +NE   ++C        
Sbjct: 450 GMWPDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKA 509

Query: 239 ----------NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                     NV+P+    +  I    K  +  + + LF  +        V+ +  LI  
Sbjct: 510 LQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINL 569

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
                  ++A  LF  +    +  D +AY  L+      G++ +   L   M   GC+ +
Sbjct: 570 FISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPN 629

Query: 349 VDTFNTLMISFLQ 361
           V T+   +  +L+
Sbjct: 630 VVTYTCFINEYLK 642



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 147/345 (42%), Gaps = 49/345 (14%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN ++ N L+K    +  +     L + +  FG RPN+ T   ++    R    ++ ++ 
Sbjct: 169 LNIMSCNFLLKCLVEDNRVDGVRLLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRR 228

Query: 82  HQEMVNGMGDFGGIY----KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137
             E++      G IY     PNV  YG+ I GLCK  L      L              L
Sbjct: 229 ASEIL------GKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQN-----------L 271

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+K + +              N VI+       G C  G ++ A  +F  M   G +PDV
Sbjct: 272 CRKNQPLN---------NHCFNAVIY-------GLCQGGILDEASEVFKEMKNSGILPDV 315

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           +SYS+LI+G+C+   V++A             ++F EM+   ++P  ++ +I IDG CK 
Sbjct: 316 YSYSILIDGFCRKGRVDQA------------SEVFKEMRNSGILPNIYSYSILIDGFCKE 363

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V + +E+F  ++ S     V  ++ LI G C+ G  + A + + +++  N       Y
Sbjct: 364 GRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNY 423

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             LI    K  Q          M++ G   D    N ++  + +K
Sbjct: 424 CSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRK 468



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 130/280 (46%), Gaps = 25/280 (8%)

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK--KTKLVEANR---- 148
           + K NV  +  LI     + +++    +F+  KD GI  N + C      LVE NR    
Sbjct: 132 VEKSNV-VFDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGV 190

Query: 149 --LLELMMQRGLNPVIFTYTPLLNGYCL-VG---KVNVAIALFDSMARKGFMPDVFSYSV 202
             L E++++ G  P I TYT ++N +C  VG    +  A  +   +   G  P+V +Y  
Sbjct: 191 RLLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGT 250

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
            I G CK         V+  +I N  +K        N        N  I GLC+ G + E
Sbjct: 251 YIKGLCK----VGLFGVAWRLIQNLCRK--------NQPLNNHCFNAVIYGLCQGGILDE 298

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             E+F  ++ S     V  ++ LI G C+ G  + ASE+F ++    ++ ++ +Y+ILI 
Sbjct: 299 ASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILID 358

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              KEG++ K   +   M+ +G   DV +++ L+  F +K
Sbjct: 359 GFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRK 398



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 102/216 (47%), Gaps = 15/216 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +++LI  F    N   A  L  KM   G   NV T   LI        M++  +L + 
Sbjct: 526 VNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFK- 584

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TLLC---- 138
              GM +   +Y P+   Y SL+ G C    + + + LF EM  +G + N  T  C    
Sbjct: 585 ---GMKE-SRVY-PDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINE 639

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF-MP 195
             K  K  +A++L E M +RG+ P    YT L+  +C  G++N A ALFD M ++G   P
Sbjct: 640 YLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTP 699

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           +V  Y+ LIN Y K    ++A  +  EM   G  ++
Sbjct: 700 NVVMYTCLINSYIKLNKRDQAEKLYEEMRAKGLSRL 735



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 85/214 (39%), Gaps = 14/214 (6%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N  ++N  I   C       A QL+  M      P+V    TLI+   +  N    + L
Sbjct: 488 FNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVML 547

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             +M      F      NV  Y  LI+    D  +D    LF  MK+  +  + +     
Sbjct: 548 FIKMTKVGITF------NVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSL 601

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C   ++  A  L + M + G +P + TYT  +N Y  + K N A  L++ M  +G 
Sbjct: 602 VAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGV 661

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
            PD   Y++LI  +C    +  A  +  EM   G
Sbjct: 662 YPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEG 695



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 32/170 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + + + SL+ GFC  G +  A  L  +M+  GC PNV T    I    +    N   KL+
Sbjct: 594 DQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLY 653

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
           ++M        G+Y P+   Y  LI   C    +++ + LF EMK +G            
Sbjct: 654 EKMKER-----GVY-PDQILYTMLIAAFCNTGEMNRAEALFDEMKQEG------------ 695

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                            P +  YT L+N Y  + K + A  L++ M  KG
Sbjct: 696 --------------RCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKG 731


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 165/347 (47%), Gaps = 27/347 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N+++KG CM     D  +L+ +M   GC PNV T +TLI  L R G   L  ++H E
Sbjct: 214 VSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNG---LFEQVH-E 269

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            ++ M + G    P++  Y ++IDG+CKD   +   D+   M   G+  N +        
Sbjct: 270 ALSQMPEHG--CTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKG 327

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +  EA  LL  M Q        T+  L++ +C  G V+  I L + M   G +PD
Sbjct: 328 LCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPD 387

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ +ING+CK   V+EA+             +   M  C   P T +  I + GLC+
Sbjct: 388 VITYTTVINGFCKEGLVDEAV------------MLLKNMSACGCKPNTISYTIVLKGLCR 435

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
               ++  EL   +    C      FN+LI   CK G+ E A EL  ++       D+++
Sbjct: 436 AERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLIS 495

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y+ +I  LGK G+ ++   LL  M   G   +   +++ M S L +E
Sbjct: 496 YSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSS-MASALSRE 541



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 168/350 (48%), Gaps = 26/350 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N  TFN+LI   C  G      + + +M   GC P++    T+I G+ + G+  +   
Sbjct: 245 PPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVA-- 302

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANT--- 135
              ++++ M  +G   KPNV CY +++ GLC     ++ +DL  EM  +D  ++  T   
Sbjct: 303 --NDILSRMPSYG--LKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNI 358

Query: 136 ---LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                C+   +     LLE M++ G  P + TYT ++NG+C  G V+ A+ L  +M+  G
Sbjct: 359 LVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACG 418

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+  SY++++ G C+     +A  +   MI  G             +P   T N  I+
Sbjct: 419 CKPNTISYTIVLKGLCRAERWVDAQELISHMIQQG------------CLPNPVTFNTLIN 466

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            +CK G V + +EL   + ++ C   +  ++++I G  K G  E A EL N +  K +  
Sbjct: 467 FMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITP 526

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + + Y+ +  AL +EG+  K   +  S+++     D   +N ++ S  ++
Sbjct: 527 NTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKR 576



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 154/350 (44%), Gaps = 53/350 (15%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL----RRTGNMNLTLKLH 82
           + ++I G C +G+   A+ ++ +M ++G +PNV   +T++ GL    R     +L  ++ 
Sbjct: 286 YATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMF 345

Query: 83  QE---------------------------MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL 115
           QE                           ++  M + G I  P+V  Y ++I+G CK+ L
Sbjct: 346 QEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCI--PDVITYTTVINGFCKEGL 403

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           VD+   L   M   G   NT+        LC+  + V+A  L+  M+Q+G  P   T+  
Sbjct: 404 VDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNT 463

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L+N  C  G V  AI L   M   G  PD+ SYS +I+G  K    EEA+ +   MI  G
Sbjct: 464 LINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKG 523

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                       + P T   +     L + G   +++++F +++ +       ++N++I 
Sbjct: 524 ------------ITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVIS 571

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
             CK    + A + F  +     + +   Y ILI  L  EG +++   LL
Sbjct: 572 SLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLL 621



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 160/337 (47%), Gaps = 26/337 (7%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N ++   C +G + +  +L++K+ +FGC P++ + + ++ GL      +   +L  EMV 
Sbjct: 182 NLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVR 241

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CK 139
            +G       PNV  + +LI  LC++ L +Q  +   +M + G   +  +        CK
Sbjct: 242 -VG-----CPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICK 295

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
                 AN +L  M   GL P +  Y  +L G C   +   A  L   M ++    D  +
Sbjct: 296 DGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVT 355

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           +++L++ +C+N  V+  + +  +M+ +G             +P+  T    I+G CK G 
Sbjct: 356 FNILVDFFCQNGLVDRVIELLEQMLEHG------------CIPDVITYTTVINGFCKEGL 403

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           V E + L   +    C+     +  +++G C+   +  A EL + +  +  + + V +N 
Sbjct: 404 VDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNT 463

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           LI+ + K+G +++   LL  M  NGC+ D+ +++T++
Sbjct: 464 LINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 500



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 139/343 (40%), Gaps = 32/343 (9%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            ++LI+  C  G   DA+   + + T G    V   + +I G  R G +    +L   + 
Sbjct: 47  LSALIRSLCAAGRTADAA---RALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP 103

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-------- 138
                      PN + Y  ++  LC   L+     +  EM  +G  A   +C        
Sbjct: 104 ---------VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAAC 154

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +      A R L+++  +G          +++  C  G V+  + L   +   G  PD+ 
Sbjct: 155 RGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIV 214

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           SY+ ++ G C     ++   +  EM+  G              P   T N  I  LC+NG
Sbjct: 215 SYNAVLKGLCMAKRWDDVEELMVEMVRVGCP------------PNVATFNTLIAYLCRNG 262

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              +V E    +    C   + ++ ++I G CK G  E+A+++ +++    L  +VV YN
Sbjct: 263 LFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYN 322

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            ++  L    + ++   LL  M +  C LD  TFN L+  F Q
Sbjct: 323 TVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQ 365


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 170/351 (48%), Gaps = 28/351 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L++ T   +++  C +G  +D S+  ++M   G  PNV      I GL +   +     +
Sbjct: 106 LDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHV 165

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
            +EMV      G   KPNV+ + +LIDGLCK    ++   LF+++         ++  T+
Sbjct: 166 LEEMV------GRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTV 219

Query: 137 L----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           +    C++ KL  A  LL  M+++GL P   TYT L+ G+C  G  + A  L + M ++G
Sbjct: 220 MIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEG 279

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F+P++++Y+ +I+G+CK   ++EA  V R     G K  F+++          T  I I 
Sbjct: 280 FLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLK--FDKI----------TYTILIT 327

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
             CK GH+   ++LF  +  + C   +E + SLI   C+    E + + F+K     L+ 
Sbjct: 328 EHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLP 387

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               Y  +I    K G+      +   M +NGC  D  T+  L IS L KE
Sbjct: 388 TKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGAL-ISGLCKE 437



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 112/249 (44%), Gaps = 50/249 (20%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N  T+  +I G+C EG +  A  L+ +M   G +PN  T  TLI G  + G+ +  
Sbjct: 210 YKP-NVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRA 268

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK------------------ 120
                E++N M   G  + PN++ Y ++IDG CK   + +                    
Sbjct: 269 F----ELMNKMKQEG--FLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITY 322

Query: 121 -----------------DLFMEMKDKG----INANTLL----CKKTKLVEANRLLELMMQ 155
                            DLF  M + G    I A T L    C++ ++ E+ +  +  + 
Sbjct: 323 TILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLM 382

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
            GL P   TYT ++ GYC VG+  +A+ +F+ M + G   D  +Y  LI+G CK   +EE
Sbjct: 383 IGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEE 442

Query: 216 AMNVSREMI 224
           A  +   M+
Sbjct: 443 AKALYEGML 451



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 48/255 (18%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C++ K+ E + LL  M + G +    T T ++   C  G+       F  M   G  P+V
Sbjct: 84  CREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNV 143

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+  I+G CK   V++A +V  EM+  G K            P  +T    IDGLCK 
Sbjct: 144 VNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLK------------PNVYTHTTLIDGLCKI 191

Query: 258 GHVLEVMELFPTL------------------------EISNCELFV------------EI 281
           G       LF  L                        +++  E+ +              
Sbjct: 192 GWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNT 251

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           + +LI G CK G F+ A EL NK+  +  + ++  YN +I    K+G+I++   +L    
Sbjct: 252 YTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMAT 311

Query: 342 ENGCALDVDTFNTLM 356
             G   D  T+  L+
Sbjct: 312 SQGLKFDKITYTILI 326



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 21/248 (8%)

Query: 118 QTKDLFMEMKDKGI-----NANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           +  D+ +EM+  G+      AN +L    +    V A ++ + M + G++P+   +  L+
Sbjct: 21  EAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVSPMNRGFGALV 80

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
              C  GKV    AL  +M R GF  D  + +V++   C+    ++     R M+  G  
Sbjct: 81  VVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETG-- 138

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                       P       +IDGLCK  +V +   +   +     +  V    +LI G 
Sbjct: 139 ----------TPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGL 188

Query: 290 CKFGIFEIASELFNKL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
           CK G  E A  LF KL    +   +V  Y ++I    +EG++ +   LL+ M E G   +
Sbjct: 189 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 248

Query: 349 VDTFNTLM 356
            +T+ TL+
Sbjct: 249 TNTYTTLI 256



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 16/206 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N++I GFC +G I++A ++++   + G + +  T   LIT   + G++   L L 
Sbjct: 283 NIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLF 342

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--------MEMKDKGINA 133
             MV NG         P++  Y SLI   C+ R +++++  F        +  K    + 
Sbjct: 343 DRMVENGCC-------PDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSM 395

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               CK  +   A R+ E M+Q G      TY  L++G C   ++  A AL++ M  K  
Sbjct: 396 IAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRL 455

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNV 219
           +P   +   L   YC+      A++V
Sbjct: 456 VPCEVTRVTLTFEYCRREKTSIAVSV 481


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 176/370 (47%), Gaps = 32/370 (8%)

Query: 4   VLGALMAFGSFIR--RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
            L +  AF  F    R   PL   TFN +++  C  G    A +L+++M     RPN  T
Sbjct: 466 ALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVT 521

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +T+I G    G +   L + +EM     + GGI  PN + YG++I G CK   VD+   
Sbjct: 522 YNTVIAGFCSRGRVQAALDIMREMR----ERGGI-APNQYTYGTVISGWCKVGRVDEAVK 576

Query: 122 LFMEMKDKG------INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +F EM  KG      +  N L+   C + KL  A    + M++RG+   + TY  L++  
Sbjct: 577 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 636

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
            + G+   A  L + M  KG  PDVF+Y++LING+CK  NV++A+ +   M   G +   
Sbjct: 637 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR--- 693

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                  VV  T+T  I+   L K G V E  +LF           + ++N+LI      
Sbjct: 694 -----ATVV--TYTALIY--ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 744

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  + A E+  ++  K +  D V YN L+  L   G++ +   L+  M E G   D+ T+
Sbjct: 745 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY 804

Query: 353 NTLMISFLQK 362
           NTL+  +  K
Sbjct: 805 NTLISGYSMK 814



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 174/378 (46%), Gaps = 44/378 (11%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRT 72
            +R+  RP N VT+N++I GFC  G ++ A  ++++M   G   PN  T  T+I+G  + 
Sbjct: 510 LLRQMPRP-NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 568

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC-----------KDRLVDQTKD 121
           G ++  +K+  EM+       G  KP    Y +LI G C           +DR+V++   
Sbjct: 569 GRVDEAVKVFDEMLTK-----GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVA 623

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           + +   +  ++A   L    +  EA  L+E M  +GL P +FTY  L+NG+C  G V  A
Sbjct: 624 MTVATYNLLVHA---LFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKA 680

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK------------ 229
           + +F++M+R+G    V +Y+ LI    K   V+E   +  E +  G +            
Sbjct: 681 LEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 740

Query: 230 -----------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                      +I  EM+   + P+  T N  + GLC  G V E  +L   +     +  
Sbjct: 741 HSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPD 800

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+LI G    G  + A  + N++  K     ++ YN LI  L K GQ      ++ 
Sbjct: 801 LVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVK 860

Query: 339 SMEENGCALDVDTFNTLM 356
            M ENG   D  T+ +L+
Sbjct: 861 EMVENGITPDDSTYISLI 878



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           +T+N+LI+G C  G   DA  +VK+M   G  P+ +T  +LI GL
Sbjct: 837 LTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 881


>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
 gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
          Length = 649

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 167/354 (47%), Gaps = 37/354 (10%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           RC  P N+VTF + I+ FC  G +  A QL+ +M  +GC P+V    TLI G    G+++
Sbjct: 220 RC--PPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVD 277

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-- 134
             L L   M         + KPN  CY + + GLC     +   +L  EM  KG + N  
Sbjct: 278 QALDLLNTM---------LCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEA 328

Query: 135 ------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                 + LC+   +  A  +LE M + G  P    Y  ++N     G+V+ A+ L +SM
Sbjct: 329 TFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM 388

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             K   PD   ++ ++ G+C+     E  + + E+I   F+        C ++  TF  N
Sbjct: 389 VCK---PDALGFNAVLKGFCR----AERWHDASELIAQMFRDD------CPLIEMTF--N 433

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           I ID LC+NG V    ++F  +    C   +  ++SL+ G  + G+ E+A +LF  + CK
Sbjct: 434 ILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCK 493

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
               D+ +YN ++  L +  + +    L+  M    C  +  TFN L+ S  QK
Sbjct: 494 ---PDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQK 544



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 167/359 (46%), Gaps = 44/359 (12%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           +G LMA    +R+   P N+ TF+ LI   C    +  A +++++M  +GC P+    + 
Sbjct: 311 IGELMA--EMVRKGCSP-NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNI 367

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           +I  L   G ++  L+L   MV          KP+   + +++ G C+        +L  
Sbjct: 368 IINSLSERGRVDDALRLLNSMV---------CKPDALGFNAVLKGFCRAERWHDASELIA 418

Query: 125 EM-KDK----GINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           +M +D      +  N L   LC+   +  A ++ E M +    P I TY+ LLNG+   G
Sbjct: 419 QMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQG 478

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
            V VAI LF SM  K   PD+FSY+ ++ G C+    E+A  +  EM+            
Sbjct: 479 LVEVAIQLFRSMPCK---PDIFSYNAVLKGLCRAARWEDAGELIAEMVGK---------- 525

Query: 237 LCNVVPETFTCNIFIDGLCKNGHV---LEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
             +  P   T NI I+ LC+ G V   +EV+E  P    S  ++F   +N+LI G  + G
Sbjct: 526 --DCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYG-STPDIFT--YNALINGFSEQG 580

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             + A +L + +SCK    D ++YN  +  L +  + +    L+  M  N C  +  TF
Sbjct: 581 RLDDALKLLSTMSCK---PDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 636



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 144/339 (42%), Gaps = 55/339 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+ N+L+ G+C +G + DA +++      G   NV T   LI G  R+G ++  L+L   
Sbjct: 125 VSHNTLVAGYCRDGRLADAERVLGAARATGA-ANVVTYTALIDGYCRSGRLDDALRLIAS 183

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M            P+ + Y +++ GLC  +                           K  
Sbjct: 184 MP---------VAPDTYTYNTVLKGLCIAK---------------------------KWE 207

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           EA  L+  M++    P   T+   +  +C  G ++ A+ L D M R G  PDV  YS LI
Sbjct: 208 EAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLI 267

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           NG+ +  +V++A++            + N M LC   P T   N  + GLC      ++ 
Sbjct: 268 NGFSEQGHVDQALD------------LLNTM-LCK--PNTVCYNAALKGLCIAERWEDIG 312

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           EL   +    C      F+ LI   C+  + + A E+  ++       D V YNI+I++L
Sbjct: 313 ELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSL 372

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            + G++     LL SM    C  D   FN ++  F + E
Sbjct: 373 SERGRVDDALRLLNSMV---CKPDALGFNAVLKGFCRAE 408


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 168/368 (45%), Gaps = 38/368 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F  LI  +   G + DA  +  +M   G  P+V T  T+I+   R G +   ++   +MV
Sbjct: 443 FTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMV 502

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---------L 137
                  GI +PN   Y S+I G C    + + K+L  EM +KGI    +         L
Sbjct: 503 AR-----GI-QPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSL 556

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++++A+ + +L    G  P + T+  L++GYCLVGK++ A  + D+M   G  PD+
Sbjct: 557 CKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDI 616

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNE 234
            +Y+ L++GY KN  + + + + REM   G K                       K F+E
Sbjct: 617 VTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE 676

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M             I + GLC+N    E + LF  L   N +  + I N++I    K   
Sbjct: 677 MIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQR 736

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A ELF  +S   L+ +   Y ++I  L K+G ++  N +  SME++G        N 
Sbjct: 737 KEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNR 796

Query: 355 LMISFLQK 362
           ++   L+K
Sbjct: 797 IIRMLLEK 804



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 137/332 (41%), Gaps = 28/332 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGLRRTGNMNLTLK 80
           N V+++ ++K  C     + A  L++ MA  G  C P+V    T+I G    G       
Sbjct: 227 NAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACS 286

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  EM        G+ KP+V  Y  +ID LCK R +D+ + +  +M   G   +T+    
Sbjct: 287 LFHEMTRQ-----GV-KPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSC 340

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                    +L EA ++   M +RGL P I T    L   C  G+   A   FDSM  KG
Sbjct: 341 MIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKG 400

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+FSY  L++GY            + E        +FN MK   +        I I 
Sbjct: 401 HKPDIFSYCTLLHGY------------ASEGCFADMIGLFNSMKSNGIAANCHVFTILIH 448

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
              K G V + M +F  ++       V  ++++I    + G    A E FN++  + +  
Sbjct: 449 AYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQP 508

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +   Y+ +I      G + K   L+  M   G
Sbjct: 509 NTAVYSSIIQGFCMHGGLVKAKELVSEMINKG 540



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 177/423 (41%), Gaps = 77/423 (18%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDA-SQLVKKMATFGCRPNVTT---- 61
            L  FG  +R   + ++ +T N+L+K  C      +A + L+ +M+  GC PN  +    
Sbjct: 176 GLALFGCILRTGLK-MDQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIV 234

Query: 62  ----CD-----------------------------TLITGLRRTGNMNLTLKLHQEMVNG 88
               CD                             T+I G    G       L  EM   
Sbjct: 235 LKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTR- 293

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKK 140
                G+ KP+V  Y  +ID LCK R +D+ + +  +M   G   +T+            
Sbjct: 294 ----QGV-KPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATL 348

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            +L EA ++   M +RGL P I T    L   C  G+   A   FDSM  KG  PD+FSY
Sbjct: 349 GRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSY 408

Query: 201 SVLINGYCKN---------FNVEEAMNVSR-----EMILNGFKK---------IFNEMKL 237
             L++GY            FN  ++  ++       ++++ + K         IF EM+ 
Sbjct: 409 CTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQ 468

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             V P+  T +  I    + G + + ME F  +     +    +++S+I+G C  G    
Sbjct: 469 QGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVK 528

Query: 298 ASELFNKLSCKNLV-ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A EL +++  K +   D+V ++ +I++L K+G++   + +     + G    V TFN+L+
Sbjct: 529 AKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLI 588

Query: 357 ISF 359
             +
Sbjct: 589 DGY 591



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 163/405 (40%), Gaps = 75/405 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-LTLKLHQ 83
           V ++++I GF  EG    A  L  +M   G +P+V T + +I  L +   M+   L L Q
Sbjct: 266 VAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQ 325

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
              +G        +P+   Y  +I G      + +   +F EMK +G+  N +       
Sbjct: 326 MTTDGA-------QPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLA 378

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY----------------------- 172
            LCK  +  EA    + M  +G  P IF+Y  LL+GY                       
Sbjct: 379 SLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAA 438

Query: 173 -CLV-----------GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            C V           G V+ A+ +F  M ++G  PDV +YS +I+ + +   + +AM   
Sbjct: 439 NCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKF 498

Query: 221 REMILNGF-----------------------KKIFNEMKLCNVV-PETFTCNIFIDGLCK 256
            +M+  G                        K++ +EM    +  P+    +  I+ LCK
Sbjct: 499 NQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCK 558

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V++  ++F           V  FNSLI G C  G  + A ++ + +    +  D+V 
Sbjct: 559 DGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVT 618

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           YN L+    K G+I     L   M+  G   +  T+  ++    +
Sbjct: 619 YNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFR 663



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 161/379 (42%), Gaps = 71/379 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT++++I  F   G + DA +   +M   G +PN     ++I G    G +    +L  E
Sbjct: 476 VTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSE 535

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
           M+N      GI +P++  + S+I+ LCKD  V    D+F    D G     I  N+L+  
Sbjct: 536 MINK-----GIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDG 590

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C   K+ +A ++L+ M   G+ P I TY  LL+GY   G++N  + LF  M RKG  P+
Sbjct: 591 YCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPN 650

Query: 197 VFSYSVLI-----------------------------------NGYCKNFNVEEA----- 216
             +Y +++                                    G C+N   +EA     
Sbjct: 651 TVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQ 710

Query: 217 ----MNVSREM-ILNGF-------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
               MNV   + ILN               K++F  +    ++P   T  + I  L K+G
Sbjct: 711 KLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDG 770

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            V +   +F ++E S       + N +IR   + G    A    +K+  K ++ +    +
Sbjct: 771 GVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTS 830

Query: 319 ILIHALGKEGQIKKENYLL 337
           +++    ++G+ +++  LL
Sbjct: 831 LMLSLFSRKGKYQEDIKLL 849



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 13/202 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P   TY  L++  C   + ++ +ALF  + R G   D  + + L+   C     EEA+NV
Sbjct: 155 PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNV 214

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL--EISNCEL 277
                      + + M     VP   + +I +  LC N      ++L   +  +   C  
Sbjct: 215 -----------LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSP 263

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  ++++I G    G    A  LF++++ + +  DVV YN++I AL K   + K   +L
Sbjct: 264 DVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVL 323

Query: 338 LSMEENGCALDVDTFNTLMISF 359
             M  +G   D  T++ ++  +
Sbjct: 324 RQMTTDGAQPDTVTYSCMIHGY 345


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 168/395 (42%), Gaps = 60/395 (15%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T+N+L+KG C  G++  A  L+ +M   G +P+  T + +I G  +  N +    L
Sbjct: 374 LNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDL 433

Query: 82  HQEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLCK 112
             EM               +NG+   G I               KPN   Y +LI G  +
Sbjct: 434 LSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQ 493

Query: 113 DRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFT 164
           +    +   +   M  KG+  + L        LCK  K+ EA   L  M++RGL P ++T
Sbjct: 494 EGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYT 553

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  L++GYC  G++ VA   F  M   G  P+    + LI+GYCK  +  EA ++ R M+
Sbjct: 554 YGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCML 613

Query: 225 -----------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
                                  L G  ++ +E     +VP+ FT N  I G CK G + 
Sbjct: 614 GRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIG 673

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           +  +L   +        +  +N+LI G CK G  E A ELF+ +  K L  + V Y  +I
Sbjct: 674 KAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATII 733

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               K G + K   L   M   G   D   ++ L+
Sbjct: 734 DGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALI 768



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 167/353 (47%), Gaps = 28/353 (7%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I R  +P N  T+ +LI G+C  G ++ A +  K+M   G  PN   C  LI G  + G+
Sbjct: 543 IERGLKP-NVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGS 601

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
                 + + M+      G    P+V  Y +LI GL ++  +    +L  E  +KG+  +
Sbjct: 602 TTEATSIFRCML------GRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPD 655

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                      CK+  + +A +L E M Q+G++P I TY  L+NG C  G++  A  LFD
Sbjct: 656 VFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFD 715

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            +  KG   +  +Y+ +I+GYCK+ N+ +A             ++F+EM L  V P++F 
Sbjct: 716 GIPGKGLAHNAVTYATIIDGYCKSGNLSKAF------------RLFDEMTLKGVPPDSFV 763

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            +  IDG  K G+  + + LF    +          N+L+ G CK G    A++L   + 
Sbjct: 764 YSALIDGCRKEGNTEKALSLFLE-SVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMV 822

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            K++  D V Y ILI    K G +K+     + M++     +  T+  L+  +
Sbjct: 823 DKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGY 875



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 170/347 (48%), Gaps = 27/347 (7%)

Query: 22  LNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           L+DV T+  LI      GN ++  +L+ +M   GC P++ T + +I GL R G ++   +
Sbjct: 233 LHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFE 292

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN----ANTL 136
           L + M     D  G+   +VF Y  LIDG  K +   + K +  EM  KG+     A T 
Sbjct: 293 LKKLM-----DKKGLV-ADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTA 346

Query: 137 LC----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L     ++    EA R+ E M+ RG+   +FTY  L+ G C  G +  A AL + M   G
Sbjct: 347 LIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVG 406

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD  +Y+ +I GY K        N SR       K + +EMK  N+VP  +TC + I+
Sbjct: 407 IKPDTQTYNNMIEGYLKE------QNTSR------VKDLLSEMKKSNLVPTAYTCGMIIN 454

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLC++G + +   +F  +     +    I+ +LI+G  + G F+ A  +   +  K +  
Sbjct: 455 GLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQP 514

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           DV+ YN +I  L K  ++++    L+ M E G   +V T+  L+  +
Sbjct: 515 DVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGY 561



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 169/371 (45%), Gaps = 36/371 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           NDV   +LI G+C EG+  +A+ + + M      P+V T   LI GL R G +   ++L 
Sbjct: 585 NDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELL 644

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            E +       G+  P+VF Y S+I G CK   + +   L   M  KGI+ N +      
Sbjct: 645 SEFLEK-----GLV-PDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALI 698

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++  A  L + +  +GL     TY  +++GYC  G ++ A  LFD M  KG  
Sbjct: 699 NGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVP 758

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----------------------KIF 232
           PD F YS LI+G  K  N E+A+++  E +  GF                       ++ 
Sbjct: 759 PDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLL 818

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            +M   +V P+  T  I ID  CK G + E  + F  ++  N       + +L+ G    
Sbjct: 819 EDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMA 878

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G       LF+++  K++  D V ++++I A  KEG   K   L+  M + G  +  +  
Sbjct: 879 GRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVC 938

Query: 353 NTLMISFLQKE 363
           + L+    +KE
Sbjct: 939 HVLIDPLCRKE 949



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 168/348 (48%), Gaps = 30/348 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V + +LI GF  +G+  +A ++ ++M   G + N+ T + L+ G+ + G+M     L  E
Sbjct: 342 VAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNE 401

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+       GI KP+   Y ++I+G  K++   + KDL  EMK   +             
Sbjct: 402 MI-----MVGI-KPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIING 455

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+   + +A+R+ E+M+  G+ P    YT L+ G+   G+   A+ +   M +KG  PD
Sbjct: 456 LCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPD 515

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V  Y+ +I G CK+  +EEA +   EMI  G K            P  +T    I G CK
Sbjct: 516 VLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLK------------PNVYTYGALIHGYCK 563

Query: 257 NGHVLEVMELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           +G +      F   E+  C +     +  +LI G CK G    A+ +F  +  +++  DV
Sbjct: 564 SGEMQVADRYFK--EMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDV 621

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             Y+ LIH L + G+++    LL    E G   DV T+N+++  F ++
Sbjct: 622 RTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQ 669



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 151/330 (45%), Gaps = 36/330 (10%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N +T+N+LI G C  G I  A +L   +   G   N  T  T+I G  ++GN++   +L 
Sbjct: 690  NIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLF 749

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
             EM        G+  P+ F Y +LIDG  K+   ++   LF+E   KG  + + L     
Sbjct: 750  DEMT-----LKGV-PPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMD 803

Query: 138  --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
              CK  K++EAN+LLE M+ + + P   TYT L++ +C  G +  A   F  M ++  MP
Sbjct: 804  GFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMP 863

Query: 196  DVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGFKKIFNEMKLCNVV 241
            +  +Y+ L++GY       E   +  EMI              ++   K  + +K   +V
Sbjct: 864  NALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLV 923

Query: 242  PETF---------TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
             +            C++ ID LC+  HV EV+++   +E     L +   ++L+R   K 
Sbjct: 924  DDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKA 983

Query: 293  GIFEIASELFNKLSCKNLVADVVAYNILIH 322
            G  + A+ +   +     V D    N LI+
Sbjct: 984  GKMDGAARVLKSMVRFKWVPDSTELNDLIN 1013



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 22/267 (8%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK--TKLVEANRLLEL-------MMQR 156
           LIDG  K  L D+    F+  K  G     L C    + L++AN+L EL       M++ 
Sbjct: 172 LIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKL-ELFWRFYNGMLEA 230

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
            +   ++TYT L+N +   G       L   M  KG  P + +Y+V+I G C+   V+EA
Sbjct: 231 NVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEA 290

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
             + + M   G            +V + FT +I IDG  K     E   +   +     +
Sbjct: 291 FELKKLMDKKG------------LVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLK 338

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
                + +LI G  + G    A  +  ++  + +  ++  YN L+  + K G ++K + L
Sbjct: 339 PGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADAL 398

Query: 337 LLSMEENGCALDVDTFNTLMISFLQKE 363
           L  M   G   D  T+N ++  +L+++
Sbjct: 399 LNEMIMVGIKPDTQTYNNMIEGYLKEQ 425



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 15/231 (6%)

Query: 1    TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            + KV+ A       + +  +P + VT+  LI   C  G +++A Q    M      PN  
Sbjct: 808  SGKVIEANQLLEDMVDKHVKP-DHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNAL 866

Query: 61   TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
            T   L++G    G  +    L  EM+          +P+   +  +ID   K+    +T 
Sbjct: 867  TYTALLSGYNMAGRRSEMFALFDEMI------AKDIEPDGVTWSVMIDAHLKEGDHVKTL 920

Query: 121  DLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
             L  +M  KG N +          LC+K  + E  ++LE + ++GLN  + T + L+  +
Sbjct: 921  KLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCF 980

Query: 173  CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
               GK++ A  +  SM R  ++PD    + LIN    + + E A +  ++M
Sbjct: 981  HKAGKMDGAARVLKSMVRFKWVPDSTELNDLINVEQDSTDSENAGDFLKQM 1031


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 164/343 (47%), Gaps = 26/343 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++  T+ + +KG C  G++  A  +VK+M   GCRPNV    TLI    +       +++
Sbjct: 418 ISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRV 477

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM        GI  P+ FCY SLI GL K + +D+ +   +EM + G   +       
Sbjct: 478 LKEMRE-----QGI-APDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAF 531

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                +  +   A++ ++ M++ G+ P     T L+N YC  GKV  A + F SM  +G 
Sbjct: 532 ISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGI 591

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           + D  +Y+VL+NG  KN  V +A            ++IF+EM+   + P+ F+    IDG
Sbjct: 592 LGDAKTYTVLMNGLVKNGKVNDA------------EEIFHEMRGKGIAPDVFSYGTLIDG 639

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             K G++ +   +F  +  +     V I+N L+ G C+ G  E A EL +++S K    +
Sbjct: 640 FSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPN 699

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            V Y  +I    K G + +   L   M+  G   D   + TL+
Sbjct: 700 AVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLV 742



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 169/378 (44%), Gaps = 45/378 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V    LI  +C +G + +A    + M   G   +  T   L+ GL + G +N   ++ 
Sbjct: 559 NKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIF 618

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EM  G G       P+VF YG+LIDG  K   + +   +F EM   G+ +N ++     
Sbjct: 619 HEM-RGKG-----IAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLL 672

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+  ++ +A  LL+ M  +G  P   TY  +++GYC  G +  A  LFD M  KG +
Sbjct: 673 GGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLV 732

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNV---------SREMILNG-------FKKIFNEMKLC 238
           PD F Y+ L++G C+  +VE A+ +         S     N        F K      + 
Sbjct: 733 PDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMI 792

Query: 239 NVV----------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           N +          P   T NI ID LCK G++    ELF  ++ +N    V  + SL+ G
Sbjct: 793 NRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNG 852

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM-----EEN 343
             K G       +F+++    +  D + Y+++I+A  KEG   K   LL  M      ++
Sbjct: 853 YDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDD 912

Query: 344 GCALDVDTFNTLMISFLQ 361
           GC L + T   L+  F +
Sbjct: 913 GCKLSISTCRALLSGFAK 930



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 151/374 (40%), Gaps = 83/374 (22%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           KV+ A  AF S + +    L D  T+  L+ G    G + DA ++  +M   G  P+V +
Sbjct: 575 KVIEACSAFRSMVEQGI--LGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFS 632

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             TLI G  + GNM     +  EMV       G+   NV  Y  L+ G C+   +++ K+
Sbjct: 633 YGTLIDGFSKLGNMQKASSIFDEMVQA-----GL-TSNVIIYNMLLGGFCRSGEIEKAKE 686

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  EM  KG   N +         CK   L EA +L + M  +GL P  F YT L++G C
Sbjct: 687 LLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCC 746

Query: 174 LVGKVNVAIALFDSMAR--------------------------------------KGFMP 195
            +  V  AI +F++  +                                      K   P
Sbjct: 747 RLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKP 806

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IF 232
           +  +Y+++I+  CK  N+E A  +   M              +LNG+ K         +F
Sbjct: 807 NDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVF 866

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-----CELFVEIFNSLIR 287
           +E+    + P+    ++ I+   K G   + + L   +   N     C+L +    +L+ 
Sbjct: 867 DEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLS 926

Query: 288 GCCKFGIFEIASEL 301
           G  K G  E+A ++
Sbjct: 927 GFAKVGEMEVAEKV 940



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 144/349 (41%), Gaps = 50/349 (14%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++  LI   C +GN+    QL K              D L+      G   L +    E+
Sbjct: 226 SYEMLIGAHCRDGNV----QLAK--------------DVLLKTEEELGTATLNVDEALEL 267

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
              M   G +  P+   Y  LIDGLCK + ++  K L +EM   G+ A+ +        L
Sbjct: 268 KKSMSCKGLV--PSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGL 325

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY--CLV---GKVNVAIALFDSMARKG 192
            K      AN L+  M+  G     F+  P++  Y  C++   G +  A ALFD M   G
Sbjct: 326 LKGRNADAANGLVHEMVSHG-----FSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFG 380

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P   +Y+ LI G+ +  NV +              ++  E+K  N+V   +T    + 
Sbjct: 381 VTPGARAYASLIEGFFREKNVRKGY------------ELLVEIKKRNIVISPYTYGTAVK 428

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G+C +G +     +   +  S C   V I+ +LI+   +   F  A  +  ++  + +  
Sbjct: 429 GMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAP 488

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           D   YN LI  L K  ++ +    LL M ENG   D  T+   +  +++
Sbjct: 489 DTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIE 537



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 153/358 (42%), Gaps = 32/358 (8%)

Query: 13  SFIRRCYRPL----ND--VTFNSLIKGFCMEGNIRDASQLVK--KMATFGCRPNVTTCDT 64
           S I RC R      +D  + F  LI G+  +G + +A  +    K       P++  C+ 
Sbjct: 135 SSIVRCLREFVGKSDDRVLLFGILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNH 194

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           L+  L +   ++L   +++ MV     F      +V  Y  LI   C+D  V   KD+ +
Sbjct: 195 LLDALLKRNRLDLFWDVYKGMVERNVVF------DVQSYEMLIGAHCRDGNVQLAKDVLL 248

Query: 125 EMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
           + +++ +   TL      + EA  L + M  +GL P   +Y  L++G C   ++  A +L
Sbjct: 249 KTEEE-LGTATL-----NVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSL 302

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
              M   G   D  +YS+LI+G  K  N + A  +  EM+ +GF          ++ P  
Sbjct: 303 LVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGF----------SIDPMM 352

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
           +  + FI  + K G + +   LF  +           + SLI G  +        EL  +
Sbjct: 353 Y--DYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVE 410

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +  +N+V     Y   +  +   G +     ++  M  +GC  +V  + TL+ +FLQK
Sbjct: 411 IKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQK 468



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 31/220 (14%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T+ ++  LM  GSF +  +   NDVT+N +I   C EGN+  A +L   M      P V 
Sbjct: 788 TTDMINRLMD-GSFDK--FGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVI 844

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T  +L+ G  + G  +    +  E++       GI +P+   Y  +I+   K+ +  +  
Sbjct: 845 TYTSLLNGYDKMGRRSEMFSVFDEVIAA-----GI-EPDNIMYSVIINAFLKEGMTTKAL 898

Query: 121 DLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
            L  +M  K  NA    CK +                    I T   LL+G+  VG++ V
Sbjct: 899 VLLDQMFAK--NAVDDGCKLS--------------------ISTCRALLSGFAKVGEMEV 936

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
           A  + ++M R  ++PD  +   LIN  C + N   A + +
Sbjct: 937 AEKVVENMVRLKYIPDSSTVIELINESCISSNQRMAADAA 976


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 166/354 (46%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M        G+ +P+V+ Y  LI+GLCK+  +D     
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAMXA-----SGV-QPDVYTYSVLINGLCKEXKMD----- 229

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                                 +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 230 ----------------------DANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 268 EIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G++    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 316 DKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             +    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 376 RXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 75  FSGLIXAYLESGFLRDAIECYRLTREHKFXXPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +     +F  +   G     ++ NTL+    
Sbjct: 135 ECG------YPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 189 RLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK G
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNXLIYGLCKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 297 DLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 357 ALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKK 400



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 13/227 (5%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   +  A  + + + + GL P + +Y  L+NGY  +G ++    L  +M   G  PD
Sbjct: 152 FCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPD 211

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V++YSVLING CK   +++A             ++F+EM +  +VP   T    IDG CK
Sbjct: 212 VYTYSVLINGLCKEXKMDDA------------NELFDEMLVKGLVPNXVTFTTLIDGHCK 259

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG V   ME++  +   +    +  +N LI G CK G  + A++L  ++S K L  D + 
Sbjct: 260 NGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKIT 319

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y  LI    KEG +         M E    LD D   T +IS L +E
Sbjct: 320 YTTLIDGCCKEGNLBTAFEHRXRMIEENIRLD-DVAYTALISGLCQE 365



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 99/193 (51%), Gaps = 16/193 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T + LI GL + G++     L 
Sbjct: 246 NXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLI 305

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM + G+       KP+   Y +LIDG CK+  +B   +    M ++ I  + +     
Sbjct: 306 XEMSMKGL-------KPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTAL 358

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G 
Sbjct: 359 ISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 194 MPDVFSYSVLING 206
           +P V +Y+VL+NG
Sbjct: 419 VPSVVTYNVLMNG 431



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 26/236 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI G C E  + DA++L  +M   G  PN  T  TLI G  + G ++L ++++++M
Sbjct: 214 TYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
           ++          P++  Y  LI GLCK   + Q  DL  EM  KG+  + +         
Sbjct: 274 LSQS------LLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGC 327

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+  L  A      M++  +      YT L++G C  G+   A  +   M   G  PD 
Sbjct: 328 CKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDA 387

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            +Y+++IN +CK  +V +   + +EM  +G             VP   T N+ ++G
Sbjct: 388 XTYTMIINEFCKKGDVWKGSKLLKEMQRDGH------------VPSVVTYNVLMNG 431


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 160/341 (46%), Gaps = 34/341 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F     R  RP N+ T+ +LI GF  +G + +A +++ +M   G  P+V T +  I
Sbjct: 373 AMEFFDQMRIRGLRP-NERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI 431

Query: 67  TGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            G      M   L + QEMV  G+        P+V  Y ++I G C+   +D+   +  E
Sbjct: 432 HGHCVLERMEEALGVVQEMVEKGLA-------PDVVSYSTIISGFCRKGELDRAFQMKQE 484

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M +KG++ + +        LC+  +L EA  L + M+  GL P  FTYT L+N YC+ G 
Sbjct: 485 MVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGD 544

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +N A+ L D M  KGF+PD  +YSVLING  K     EA  +        FK I+ E   
Sbjct: 545 LNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLL-------FKLIYEESVP 597

Query: 238 CNVVPETFTCN----------IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
            +V  +T   N            I G C  G + E   +F ++   N +    ++N +I 
Sbjct: 598 SDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIH 657

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
           G C+ G    A  L+ ++     V   V    LI AL KEG
Sbjct: 658 GHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 698



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 159/346 (45%), Gaps = 36/346 (10%)

Query: 25  VTFNSLIKGFCM-EGNIR-DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +++NS++       G+++  A ++ ++M      PNV T + LI G    G         
Sbjct: 178 LSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVG--------- 228

Query: 83  QEMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
            E+  G+G FG + +    PNV  Y +LID  CK   +D+   L   M  KG+  N +  
Sbjct: 229 -ELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISY 287

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LC++  + EA  +LE M  +G  P   TY  LLNGYC  G  + A+ +   M R
Sbjct: 288 NVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVR 347

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  P V +Y+ LIN  CK  N+  AM            + F++M++  + P   T    
Sbjct: 348 NGVSPSVVTYTALINSMCKARNLNRAM------------EFFDQMRIRGLRPNERTYTTL 395

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           IDG  + G + E   +   +  S     V  +N+ I G C     E A  +  ++  K L
Sbjct: 396 IDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGL 455

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             DVV+Y+ +I    ++G++ +   +   M E G + D  T+++L+
Sbjct: 456 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLI 501



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 173/375 (46%), Gaps = 34/375 (9%)

Query: 4   VLGALMAFGSFIRRC----YRPLNDVT--FNSLIKGFCMEGNIRDASQLVKKMATFGCRP 57
            L A    GS I +C    Y   N  +  F+ ++K +     I  A   +    + G  P
Sbjct: 116 ALSASDPSGSSIFQCLKDSYHVYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMP 175

Query: 58  NVTTCDTLITGLRRT-GNMNLTLK-LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL 115
            V + ++++  + R+ G++ L+ + +++EM+           PNV+ Y  LI G C    
Sbjct: 176 GVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSR------VSPNVYTYNILIRGFCSVGE 229

Query: 116 VDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           + +    F EM+  G     +  NTL+   CK  ++ EA  LL+ M  +G+ P + +Y  
Sbjct: 230 LQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNV 289

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           ++NG C  G +  A  + + M  KGF PD  +Y+ L+NGYCK  N  +A+ +  EM+ NG
Sbjct: 290 IINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNG 349

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                       V P   T    I+ +CK  ++   ME F  + I         + +LI 
Sbjct: 350 ------------VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLID 397

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G  + G+   A  + N+++       VV YN  IH      ++++   ++  M E G A 
Sbjct: 398 GFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAP 457

Query: 348 DVDTFNTLMISFLQK 362
           DV +++T++  F +K
Sbjct: 458 DVVSYSTIISGFCRK 472


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 170/351 (48%), Gaps = 28/351 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L++ T   +++  C +G  +D S+  ++M   G  PNV      I GL +   +     +
Sbjct: 214 LDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHV 273

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
            +EMV      G   KPNV+ + +LIDGLCK    ++   LF+++         ++  T+
Sbjct: 274 LEEMV------GRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTV 327

Query: 137 L----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           +    C++ KL  A  LL  M+++GL P   TYT L+ G+C  G  + A  L + M ++G
Sbjct: 328 MIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEG 387

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F+P++++Y+ +I+G+CK   ++EA  V R     G K  F+++          T  I I 
Sbjct: 388 FLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLK--FDKI----------TYTILIT 435

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
             CK GH+   ++LF  +  + C   +E + SLI   C+    E + + F+K     L+ 
Sbjct: 436 EHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLP 495

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               Y  +I    K G+      +   M +NGC  D  T+  L IS L KE
Sbjct: 496 TKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGAL-ISGLCKE 545



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 112/249 (44%), Gaps = 50/249 (20%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N  T+  +I G+C EG +  A  L+ +M   G +PN  T  TLI G  + G+ +  
Sbjct: 318 YKP-NVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRA 376

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK------------------ 120
                E++N M   G  + PN++ Y ++IDG CK   + +                    
Sbjct: 377 F----ELMNKMKQEG--FLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITY 430

Query: 121 -----------------DLFMEMKDKG----INANTLL----CKKTKLVEANRLLELMMQ 155
                            DLF  M + G    I A T L    C++ ++ E+ +  +  + 
Sbjct: 431 TILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLM 490

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
            GL P   TYT ++ GYC VG+  +A+ +F+ M + G   D  +Y  LI+G CK   +EE
Sbjct: 491 IGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEE 550

Query: 216 AMNVSREMI 224
           A  +   M+
Sbjct: 551 AKALYEGML 559



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 148/386 (38%), Gaps = 83/386 (21%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           + A  +F+ R   P+       ++  F   G + +A+ +V +M + G    V T      
Sbjct: 95  VTAATAFVARGSLPMAHEVMRGMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETA----- 149

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
                   N  L++  E     G F  +Y   VF  G    G+C D              
Sbjct: 150 --------NWVLRVGLET----GSF--VYARKVF-DGMTRAGVCPD-------------- 180

Query: 128 DKGINANTLLC-KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           ++   A  ++C ++ K+ E + LL  M + G +    T T ++   C  G+       F 
Sbjct: 181 ERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFR 240

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M   G  P+V +Y+  I+G CK   V++A +V  EM+  G K            P  +T
Sbjct: 241 RMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLK------------PNVYT 288

Query: 247 CNIFIDGLCKNGHVLEVMELFPTL------------------------EISNCELFV--- 279
               IDGLCK G       LF  L                        +++  E+ +   
Sbjct: 289 HTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRM 348

Query: 280 ---------EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                      + +LI G CK G F+ A EL NK+  +  + ++  YN +I    K+G+I
Sbjct: 349 VEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKI 408

Query: 331 KKENYLLLSMEENGCALDVDTFNTLM 356
           ++   +L      G   D  T+  L+
Sbjct: 409 QEAYKVLRMATSQGLKFDKITYTILI 434



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 16/206 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N++I GFC +G I++A ++++   + G + +  T   LIT   + G++   L L 
Sbjct: 391 NIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLF 450

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--------MEMKDKGINA 133
             MV NG         P++  Y SLI   C+ R +++++  F        +  K    + 
Sbjct: 451 DRMVENGCC-------PDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSM 503

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               CK  +   A R+ E M+Q G      TY  L++G C   ++  A AL++ M  K  
Sbjct: 504 IAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRL 563

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNV 219
           +P   +   L   YC+      A++V
Sbjct: 564 VPCEVTRVTLTFEYCRREKTSIAVSV 589


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 176/370 (47%), Gaps = 32/370 (8%)

Query: 4   VLGALMAFGSFIR--RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
            L +  AF  F    R   PL   TFN +++  C  G    A +L+++M     RPN  T
Sbjct: 461 ALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVT 516

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +T+I G    G +   L + +EM     + GGI  PN + YG++I G CK   VD+   
Sbjct: 517 YNTVIAGFCSRGRVQAALDIMREMR----ERGGI-APNQYTYGTVISGWCKVGRVDEAVK 571

Query: 122 LFMEMKDKG------INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +F EM  KG      +  N L+   C + KL  A    + M++RG+   + TY  L++  
Sbjct: 572 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 631

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
            + G+   A  L + M  KG  PDVF+Y++LING+CK  NV++A+ +   M   G +   
Sbjct: 632 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR--- 688

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                  VV  T+T  I+   L K G V E  +LF           + ++N+LI      
Sbjct: 689 -----ATVV--TYTALIY--ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 739

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  + A E+  ++  K +  D V YN L+  L   G++ +   L+  M E G   D+ T+
Sbjct: 740 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY 799

Query: 353 NTLMISFLQK 362
           NTL+  +  K
Sbjct: 800 NTLISGYSMK 809



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 174/378 (46%), Gaps = 44/378 (11%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRT 72
            +R+  RP N VT+N++I GFC  G ++ A  ++++M   G   PN  T  T+I+G  + 
Sbjct: 505 LLRQMPRP-NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 563

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC-----------KDRLVDQTKD 121
           G ++  +K+  EM+       G  KP    Y +LI G C           +DR+V++   
Sbjct: 564 GRVDEAVKVFDEMLTK-----GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVA 618

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           + +   +  ++A   L    +  EA  L+E M  +GL P +FTY  L+NG+C  G V  A
Sbjct: 619 MTVATYNLLVHA---LFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKA 675

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK------------ 229
           + +F++M+R+G    V +Y+ LI    K   V+E   +  E +  G +            
Sbjct: 676 LEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 735

Query: 230 -----------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                      +I  EM+   + P+  T N  + GLC  G V E  +L   +     +  
Sbjct: 736 HSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPD 795

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+LI G    G  + A  + N++  K     ++ YN LI  L K GQ      ++ 
Sbjct: 796 LVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVK 855

Query: 339 SMEENGCALDVDTFNTLM 356
            M ENG   D  T+ +L+
Sbjct: 856 EMVENGITPDDSTYISLI 873



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           +T+N+LI+G C  G   DA  +VK+M   G  P+ +T  +LI GL
Sbjct: 832 LTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 876


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 166/354 (46%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 225

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 226 ------------------SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 268 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 316 DKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K   LL  M+ +G    V T+N LM
Sbjct: 376 REMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 135 ECG------YPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 297 DLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 16/193 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G++     L 
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLI 305

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM V G+       KP+   Y +LIDG CK+  +D   +    M  + I  + +     
Sbjct: 306 DEMSVKGL-------KPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTAL 358

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGH 418

Query: 194 MPDVFSYSVLING 206
           +P V +Y+VL+NG
Sbjct: 419 VPSVVTYNVLMNG 431


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 162/331 (48%), Gaps = 28/331 (8%)

Query: 37  EGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIY 96
             ++R A +L   +     RP+  T +  +      G+++  + + + M        G  
Sbjct: 133 HADVRGAFEL---LVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRM-----GCDGAP 184

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANR 148
            PN F Y  +I GL K         LF EM +K      I  NT++    KK  L    R
Sbjct: 185 APNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFR 244

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L   M++ GL P + TY  LL+G C  G++    A+ D MA +  +PD F+YS+L +G+ 
Sbjct: 245 LWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHS 304

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           +  + +  +++  E +  G K               +TC+I ++GLCK+G + +  E+  
Sbjct: 305 RTGDSQTMLSLFEESVKKGVKI------------GAYTCSILLNGLCKDGKISKAEEVLQ 352

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
           TL  S       I+N+LI G C+ G  E A  +F ++  + +  D + YN LI+ LGK  
Sbjct: 353 TLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVE 412

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +I + + L++ ME+NG    V+TFNTL+ ++
Sbjct: 413 RITEAHDLVIEMEKNGVNPSVETFNTLIDAY 443



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 164/365 (44%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+N++I G   +G++    +L  +M   G +PNV T + L++GL R G M  T  + 
Sbjct: 222 NHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVL 281

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM +          P+ F Y  L DG  +         LF E   KG+           
Sbjct: 282 DEMASRK------MVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILL 335

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  K+ +A  +L+ ++  GL      Y  L+NGYC +G +  A ++F  M  +   
Sbjct: 336 NGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIR 395

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------I 231
           PD  +Y+ LING  K   + EA ++  EM  NG                          I
Sbjct: 396 PDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFII 455

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            ++M+   + P   +    ++  CKNG +LE + +   + I +     +++N++I    +
Sbjct: 456 LSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIE 515

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  + A  L  K+    +   +V YN+LI  L K+ QI +   LL S+   G A DV +
Sbjct: 516 CGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVIS 575

Query: 352 FNTLM 356
           +NTL+
Sbjct: 576 YNTLI 580



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 169/384 (44%), Gaps = 39/384 (10%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGC-RPNVTTCDTLITG 68
           AF   +    RP +  T+N  ++   + G++ +A  ++++M   G   PN  + + +I G
Sbjct: 139 AFELLVAARARP-DTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAG 197

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L + G     +KL  EM            PN   Y ++IDG  K   ++    L+ +M  
Sbjct: 198 LWKAGTDCDAVKLFDEMPEKA------VVPNHITYNTMIDGHIKKGDLESGFRLWSQMLR 251

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
            G+  N +        LC+  ++ E   +L+ M  R + P  FTY+ L +G+   G    
Sbjct: 252 HGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQT 311

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI---------------- 224
            ++LF+   +KG     ++ S+L+NG CK+  + +A  V + ++                
Sbjct: 312 MLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLIN 371

Query: 225 -------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                  L G   IF +MK   + P+  T N  I+GL K   + E  +L   +E +    
Sbjct: 372 GYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNP 431

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            VE FN+LI    + G  E    + + +  K L  +VV+Y  +++A  K G+I +   +L
Sbjct: 432 SVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAIL 491

Query: 338 LSMEENGCALDVDTFNTLMISFLQ 361
             M           +N ++ ++++
Sbjct: 492 DDMFIKDVLPGAQVYNAIIDAYIE 515



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 135/317 (42%), Gaps = 33/317 (10%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GA   F     R  RP + +T+N+LI G      I +A  LV +M   G  P+V T +TL
Sbjct: 381 GAFSIFQQMKSRLIRP-DHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTL 439

Query: 66  ITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKD----RLVDQTK 120
           I    R G +     +  +M   G+       KPNV  YGS+++  CK+      V    
Sbjct: 440 IDAYGRAGQLEKCFIILSDMQEKGL-------KPNVVSYGSIVNAFCKNGKILEAVAILD 492

Query: 121 DLFMEMKDKGINA-NTLL-----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           D+F++    G    N ++     C  T   +A  L E M   G+ P I TY  L+ G C 
Sbjct: 493 DMFIKDVLPGAQVYNAIIDAYIECGSTD--QAFMLAEKMKSSGVPPSIVTYNLLIKGLCK 550

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
             +++ A  L DS+   G  PDV SY+ LI+  C   N + A+ + +EM    +K     
Sbjct: 551 QSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEM----WK----- 601

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
              C + P   T  +    L   G V E+  L+  +   +      I+N ++    K G 
Sbjct: 602 ---CGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGE 658

Query: 295 FEIASELFNKLSCKNLV 311
                 L  ++S K + 
Sbjct: 659 ESKVEALRKEMSDKGIA 675


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 176/371 (47%), Gaps = 47/371 (12%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V++ +LI G C  G  R A Q+++ +     +PNV    T+I  L +   +     L
Sbjct: 82  LNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDL 141

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           + +M+           P+V  Y +L+ G      + +   LF +M  K I  +       
Sbjct: 142 YSQMLLKR------ISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNIL 195

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+ ++ +A  +L +M+++ ++P + TY  L++GY LV + N A  +F++MAR+G 
Sbjct: 196 VDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGV 255

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PDV SYSV+ING CK   V+EA+N            +  EM   ++ P T T +  IDG
Sbjct: 256 TPDVHSYSVMINGLCKTKMVDEAVN------------LLKEMHSKSMAPNTVTYSSLIDG 303

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           L K+G + +  +L   +        V  +NSL+   CK    + A  L  K+  + +  D
Sbjct: 304 LHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPD 363

Query: 314 VVAYNILIHALGKEGQIK--KENY-------------------LLLSMEENGCALDVDTF 352
           +  Y IL+  L K G++K  +E Y                   LL  ME+NGC  +  TF
Sbjct: 364 IYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTF 423

Query: 353 NTLMISFLQKE 363
             L+ +  + +
Sbjct: 424 EILIRALFEND 434



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 147/310 (47%), Gaps = 37/310 (11%)

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
           TL  H +++         ++ N   YG+LIDGLCK         +   +    +  N + 
Sbjct: 68  TLHFHDDVI------AKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVM 121

Query: 137 -------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                  LCK   +++A  L   M+ + ++P + TY  L+ G  +VG++  A+ LF+ M 
Sbjct: 122 YSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQML 181

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGF---KK-- 230
            K   PD++++++L++G CK   +++A NV   MI              ++G+   K+  
Sbjct: 182 LKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQEN 241

Query: 231 ----IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
               +FN M    V P+  + ++ I+GLCK   V E + L   +   +       ++SLI
Sbjct: 242 KATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLI 301

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G  K G    A +L N++  +   ADV+ YN L+ AL K  Q+ K   LL  +++ G  
Sbjct: 302 DGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQ 361

Query: 347 LDVDTFNTLM 356
            D+ T+  L+
Sbjct: 362 PDIYTYTILV 371



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 31/231 (13%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           A   F +  RR   P  DV +++ +I G C    + +A  L+K+M +    PN  T  +L
Sbjct: 243 ATFVFNTMARRGVTP--DVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSL 300

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I GL ++G +        ++VN M + G     +V  Y SL+D LCK+  VD+   L  +
Sbjct: 301 IDGLHKSGRIFDAW----DLVNEMHNRGQ--PADVITYNSLLDALCKNHQVDKAITLLTK 354

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           +KD+GI  +          LCK  +L +A  + +++              L+ GY L   
Sbjct: 355 IKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQIL--------------LIKGYHLDSL 400

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
            + A++L   M   G  P+  ++ +LI    +N   ++A+ + REMI  G 
Sbjct: 401 FDKALSLLSKMEDNGCTPNPVTFEILIRALFENDMNDKAVELLREMIARGL 451



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 128/296 (43%), Gaps = 37/296 (12%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLL---------CKKTKL 143
           P +F +G +   L K         L  +M+ +GI     N N L+         C   K+
Sbjct: 6   PTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKV 65

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            E     + ++ +G      +Y  L++G C  G+   A+ +  ++      P+V  YS +
Sbjct: 66  KETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTI 125

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNV 240
           I   CK+  V +A ++  +M+L                            +FN+M L N+
Sbjct: 126 IYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNI 185

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+ +T NI +DGLCK G + +   +   +   + +  V  +NSL+ G         A+ 
Sbjct: 186 KPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATF 245

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +FN ++ + +  DV +Y+++I+ L K   + +   LL  M     A +  T+++L+
Sbjct: 246 VFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLI 301


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 172/352 (48%), Gaps = 39/352 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI G C  G+I  A     KM   G   N  T   LI GL + G       L 
Sbjct: 196 NVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLF 255

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           ++M +NG+        PN++ Y  L++  C +  + +  DLF EM+++G+ AN +     
Sbjct: 256 EKMKINGLF-------PNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTL 308

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              +C++ ++ EA +L++ M +  ++P + TY  L+ G+C VG ++ A +L D +   G 
Sbjct: 309 IGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGL 368

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
            P + +Y++LI GY K  N +   +++REM   G                         +
Sbjct: 369 SPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQ 428

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           I++ M+   +VP+ +   + I GLC  G++ E  +LF ++   + E    I+N++I G C
Sbjct: 429 IYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYC 488

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           K      A  L  ++  K LV +V +Y+ +I  L K+G+ ++   LL  M E
Sbjct: 489 KEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIE 540



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 167/361 (46%), Gaps = 34/361 (9%)

Query: 7   ALMAFGSFIRR--CYRP-LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           AL+ F   + +   +RP + +    SL++  C E      ++L +++     + +V +  
Sbjct: 112 ALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELKERV-----KFDVYSFG 166

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            +I G    GN++ + +L    +  + D G    PNV  Y +LIDG CK+  +++ +  F
Sbjct: 167 IMIKGCCENGNLDKSFQL----LGLLQDMG--LSPNVVIYTTLIDGCCKNGDIERARLFF 220

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            +M + G+ AN          L KK    +   L E M   GL P ++TY  L+N YC  
Sbjct: 221 DKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGE 280

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           GK+  A  LFD M  +G   +V +Y+ LI G C+   V EA            +K+ ++M
Sbjct: 281 GKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEA------------EKLVDQM 328

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           K   V P   T N  I G C  G++ +   L   L+ +     +  +N LI G  K G +
Sbjct: 329 KKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNW 388

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           +  ++L  ++  + +    V   +LI A  +  +++K   +  SME+ G   DV  +  L
Sbjct: 389 KGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVL 448

Query: 356 M 356
           +
Sbjct: 449 I 449



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 172/405 (42%), Gaps = 52/405 (12%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           L AL  F S I++ ++  +  + + L++       +  A  L+ ++ +        T  +
Sbjct: 19  LQALSLFNSSIQQGFQHTHH-SISFLLQHLLDHHKLPHAQSLILQILSNKISSPFFTVPS 77

Query: 65  LITGLRRTGNMNLTLKLHQEMV-----------------NGMGDFGGIYKPNVFCYGSLI 107
           L+  L +  N ++T  L  E +                 N M D G +++PN+F   SL+
Sbjct: 78  LLHHLTQNQNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIF--NSLL 135

Query: 108 DGLCKDRLVDQTKDLFMEMKDK--------GINANTLLCKKTKLVEANRLLELMMQRGLN 159
             L +    ++    F E+K++        GI      C+   L ++ +LL L+   GL+
Sbjct: 136 GSLVRSNCFEKAWLFFNELKERVKFDVYSFGIMIKGC-CENGNLDKSFQLLGLLQDMGLS 194

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P +  YT L++G C  G +  A   FD M   G + + ++++VLING  K    ++  ++
Sbjct: 195 PNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDL 254

Query: 220 SREMILNGFKK-----------------------IFNEMKLCNVVPETFTCNIFIDGLCK 256
             +M +NG                          +F+EM+   V     T N  I G+C+
Sbjct: 255 FEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCR 314

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              V E  +L   ++ +     +  +N+LI G C  G  + AS L ++L    L   +V 
Sbjct: 315 EERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVT 374

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           YNILI    K G  K    L   ME  G +    T   L+ ++++
Sbjct: 375 YNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVR 419



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 14/181 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N LI+G+   GN +  + L ++M   G  P+  TC  LI    R   M    +++  
Sbjct: 373 VTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIY-- 430

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL-- 137
             + M  FG +  P+V+ YG LI GLC    + ++  LF  M +  +       NT++  
Sbjct: 431 --SSMEKFGLV--PDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHG 486

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+     A RLL  M  +GL P + +Y+ ++   C  GK   A  L D M      P 
Sbjct: 487 YCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPS 546

Query: 197 V 197
            
Sbjct: 547 A 547


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 172/372 (46%), Gaps = 38/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   FN LI  +   G +  A  + + M   G  P+  T  T+I+ L R G ++  L   
Sbjct: 331 NHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKF 390

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             MV    D G    P+   Y  LI G C    + + K+L  EM +K I    +      
Sbjct: 391 NHMV----DIG--VPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSI 444

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L K+ ++ E   +++LM+Q G  P + T+  L+ GYCLVG +  A AL D+MA  G 
Sbjct: 445 INNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGI 504

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KK 230
            P+ + Y  L++GYCKN  +++A+ V R+M              IL+G          KK
Sbjct: 505 EPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKK 564

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F+EM          T  + + GLC+N    E   L   L   N +  +  FN +I    
Sbjct: 565 MFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAML 624

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A ELF  +S   LV  V  YN++I  L KE   ++ + L +S+E++G A D  
Sbjct: 625 KVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSR 684

Query: 351 TFNTLMISFLQK 362
             N ++   L+K
Sbjct: 685 LLNHIVRMLLKK 696



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 179/360 (49%), Gaps = 30/360 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           AL  FG  +R    P  DV ++N+LI GF  EG +  A +L  KM      P+V T ++L
Sbjct: 141 ALAVFGRLLRTGLGP--DVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSL 198

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I GL +T  M  + ++ ++MV+      GI +PN   Y SLI G     +  ++  +F E
Sbjct: 199 IDGLCKTKEMVKSERVLEQMVD-----AGI-RPNNKTYNSLIYGYSTAGMWKESVRVFKE 252

Query: 126 MKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M   G     +N N+    LC+  ++ EA  + + M+ +G  P I +Y+ LL+GY   G 
Sbjct: 253 MSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGC 312

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
                +L + M  KG +P+   +++LIN Y +   +++AM             IF +M+ 
Sbjct: 313 FANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAM------------LIFEDMQN 360

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             ++P+T T    I  LC+ G + + +  F  +          ++  LI+GCC  G    
Sbjct: 361 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVK 420

Query: 298 ASELFNKLSCKNLVADVVAY-NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A EL +++  K++    V Y + +I+ L KEG++ +   ++  M + G   +V TFN+LM
Sbjct: 421 AKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLM 480



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 36/290 (12%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N VTFNSL++G+C+ GN+ +A  L+  MA+ G  PN     TL+ G  + G ++  L
Sbjct: 470 RP-NVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDAL 528

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            + ++M++      G+ KP    Y  ++ GL + R     K +F EM + G   +     
Sbjct: 529 TVFRDMLH-----KGV-KPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYG 582

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LC+     EAN LLE +    +   I T+  +++    VG+   A  LF +++  
Sbjct: 583 VVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTY 642

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G +P V +Y+++I+   K  + EEA N            +F  ++     P++   N  +
Sbjct: 643 GLVPTVHTYNLMISNLIKEESYEEADN------------LFISVEKSGRAPDSRLLNHIV 690

Query: 252 DGLCKNGHVLEVMELFP-------TLEISNCELFVEIFNSLIRGCCKFGI 294
             L K   V +             TLE S   L   +F+    G C+  I
Sbjct: 691 RMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSR--EGKCREHI 738



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 23/230 (10%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           +++ GL P + +Y  L++G+   G+V+ A  LF  M  +   PDV +Y+ LI+G CK   
Sbjct: 148 LLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKE 207

Query: 213 VEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFTCNI 249
           + ++  V  +M+  G +                       ++F EM    ++P    CN 
Sbjct: 208 MVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNS 267

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           FI  LC++  + E  ++F ++ +   +  +  +++L+ G    G F   + L N +  K 
Sbjct: 268 FIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKG 327

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +V +   +NILI+A  + G + K   +   M+  G   D  TF T++ S 
Sbjct: 328 IVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 377



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 255 CKNGHVLEVMELFPTLEISNCELF------VEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           C +G  L V ELF  ++   C         +  +N LI    +    E+A  +F +L   
Sbjct: 93  CSDGPALAV-ELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRT 151

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            L  DV +YN LI    KEG++ K   L   M E   + DV T+N+L+
Sbjct: 152 GLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLI 199


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 164/338 (48%), Gaps = 39/338 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN ++   C EG ++ A + +  M   G +PNV + +T+I G    GN+    ++   M
Sbjct: 251 TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAM 310

Query: 86  -VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
            V G+       +P+ + YGSLI G+CK+  +++   LF +M + G     +  NTL+  
Sbjct: 311 RVKGI-------EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDG 363

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C K  L  A    + M+++G+ P + TY  L++   + G++  A  +   M +KG +PD
Sbjct: 364 YCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPD 423

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF-------------NEMKLCN---- 239
             +Y++LINGY +  N ++A ++  EM+  G +                N MK  +    
Sbjct: 424 AITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFE 483

Query: 240 ------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                 V P+    N  +DG C NG+V     L   ++  +       FN+L++G C+ G
Sbjct: 484 KILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREG 543

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
             E A  L +++  + +  D ++YN LI   G+ G IK
Sbjct: 544 KVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIK 581



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 161/365 (44%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + + F+ L++  C      +A +    M   G  P + TC+ +++   +   M +   L+
Sbjct: 178 SSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLY 237

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL--FME---MKDKGINANTLL 137
            EM      F       V+ +  +++ LCK+  + + ++   FME    K   ++ NT++
Sbjct: 238 AEM------FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTII 291

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
                +  +  A R+L+ M  +G+ P  +TY  L++G C  G++  A  LFD M   G +
Sbjct: 292 HGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLV 351

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
           P+  +Y+ LI+GYC   ++E A +   EM+  G                          +
Sbjct: 352 PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDM 411

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
             EM+   ++P+  T NI I+G  + G+  +  +L   +     E     + SLI    +
Sbjct: 412 IKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 471

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               + A +LF K+  + +  DV+ +N ++      G +++   LL  M+      D  T
Sbjct: 472 RNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVT 531

Query: 352 FNTLM 356
           FNTLM
Sbjct: 532 FNTLM 536



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 26/240 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N L+    MEG + +A  ++K+M   G  P+  T + LI G  R GN      LH EM
Sbjct: 391 TYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEM 450

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
           ++      GI +P    Y SLI  L +   + +  DLF ++ D+G++ + ++        
Sbjct: 451 LSK-----GI-EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGH 504

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C    +  A  LL+ M ++ + P   T+  L+ G C  GKV  A  L D M R+G  PD 
Sbjct: 505 CANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDH 564

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY+ LI+GY +  ++++A  V  EM+  GF             P   T N  I  LCKN
Sbjct: 565 ISYNTLISGYGRRGDIKDAFRVRDEMLSIGFN------------PTLLTYNALIKCLCKN 612



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ SLI        +++A  L +K+   G  P+V   + ++ G    GN+     L +E
Sbjct: 460 VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKE 519

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLC- 138
           M     D   +  P+   + +L+ G C++  V++ + L  EMK +GI       NTL+  
Sbjct: 520 M-----DRKSV-PPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 573

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             ++  + +A R+ + M+  G NP + TY  L+   C   + ++A  L   M  KG  PD
Sbjct: 574 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 633

Query: 197 VFSYSVLING 206
             +Y  LI G
Sbjct: 634 DSTYLSLIEG 643



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 69/114 (60%), Gaps = 6/114 (5%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P ++VTFN+L++G C EG + +A  L+ +M   G +P+  + +TLI+G  R G++    +
Sbjct: 526 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFR 585

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           +  EM++ +G     + P +  Y +LI  LCK++  D  ++L  EM +KGI+ +
Sbjct: 586 VRDEMLS-IG-----FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 633



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 12/190 (6%)

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C + + + A   F  M  KG +P + + + +++ + K   +E A  +  EM         
Sbjct: 190 CELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMF-------- 241

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
             +++ + V   +T NI ++ LCK G + +  E    +E    +  V  +N++I G    
Sbjct: 242 -RLRISSTV---YTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSR 297

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  E A  + + +  K +  D   Y  LI  + KEG++++ + L   M E G   +  T+
Sbjct: 298 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 357

Query: 353 NTLMISFLQK 362
           NTL+  +  K
Sbjct: 358 NTLIDGYCNK 367


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 158/330 (47%), Gaps = 27/330 (8%)

Query: 24  DVTF-NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           DVT   +L+ G C  G++ +A ++  +M   G  PN  T   L+ G    G       L 
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL- 136
           +EM  G     G+ +PN++ Y  LI   C+    ++ + LF EM  +GI     + NTL 
Sbjct: 97  EEMRRG-----GV-EPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLI 150

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  KL +A +LL++M   G  P I T+  L++GY   GK++ A+  F+ M   GF 
Sbjct: 151 AGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQ 210

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P   +Y++LI G+C+  ++  A             +  ++MK   + P   T  I ID  
Sbjct: 211 PSAVTYNMLIAGFCRARDMTRA------------NRALSDMKERGLEPTKVTYTILIDSF 258

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            +  H+ +  E+   +E +  E+    +  L+R  C  G  + A +LF  +  K +    
Sbjct: 259 ARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSN 318

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENG 344
           V Y+++I+  G+EG   K   L++ M + G
Sbjct: 319 VIYDMMIYGYGREGSSYKALKLIMEMRQKG 348



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 12/225 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK   + EA R+ + M   GL P   TYT L++GY   G+     ALF+ M R G  P++
Sbjct: 49  CKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNL 108

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           ++Y+ LI  +C+    E A            + +F+EM +  +V    + N  I GLC++
Sbjct: 109 YTYNCLIGEWCRTGEFERA------------RSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + +  +L   +        +  FN L+ G  K G    A   FN++         V Y
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTY 216

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N+LI    +   + + N  L  M+E G      T+  L+ SF ++
Sbjct: 217 NMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARE 261



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 116/257 (45%), Gaps = 26/257 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++N+LI G C  G + DA++L+  M T G RP++ T + L+ G  + G M+  L   
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFF 201

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M          ++P+   Y  LI G C+ R + +      +MK++G+    +      
Sbjct: 202 NQMK------AAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILI 255

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               ++  + +A  +L  M + GL     TY  L+   C+ G +  A  LF SM  KG  
Sbjct: 256 DSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVE 315

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P    Y ++I GY +  +  +A+            K+  EM+   ++P + +  + I  L
Sbjct: 316 PSNVIYDMMIYGYGREGSSYKAL------------KLIMEMRQKGLIPNSASYGLTIRVL 363

Query: 255 CKNGHVLEVMELFPTLE 271
           CK+    E   L   +E
Sbjct: 364 CKDDKCQEAEALLDDME 380



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 173 CLVGKVNVAIALFDSMARKGFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           C  G V  A+A+     + G    DV + + L+NG CK  +V EA            +++
Sbjct: 13  CAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEA------------RRV 60

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F+EM L  + P   T    + G   +G   +   LF  +     E  +  +N LI   C+
Sbjct: 61  FDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCR 120

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G FE A  LF+++  + +V +VV+YN LI  L + G++     LL  M   G    + T
Sbjct: 121 TGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIIT 180

Query: 352 FNTLMISF 359
           FN L+  +
Sbjct: 181 FNLLVDGY 188



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 12/194 (6%)

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L+NG C  G V  A  +FD M   G  P+  +Y+ L++GY  +   E+          
Sbjct: 42  TALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREK---------- 91

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
            GF  +F EM+   V P  +T N  I   C+ G       LF  + +      V  +N+L
Sbjct: 92  -GFA-LFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTL 149

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G C+ G    A++L + +  +     ++ +N+L+   GK G++         M+  G 
Sbjct: 150 IAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGF 209

Query: 346 ALDVDTFNTLMISF 359
                T+N L+  F
Sbjct: 210 QPSAVTYNMLIAGF 223


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 168/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSX 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSVMLAS-----GV-QPDVYTYSVLINGLCKE--------- 225

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN   + M+ +GL P   T+T L++G+C  G+V++A 
Sbjct: 226 ------------------SKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAK 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  +M + G K            P
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IBG CK G +    E    +   N  L   ++ +LI G C+ G    A ++ 
Sbjct: 316 DKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G A  V T+N LM
Sbjct: 376 REMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 429



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEIL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 135 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYI 188

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL  +M+  G+ P ++TY+ L+NG C   K++ A   FD M  KG +P+  
Sbjct: 189 RLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ A            K+I+ +M   +++P+  T N  I GLCK G
Sbjct: 249 TFTTLIDGHCKNGRVDLA------------KEIYKQMLSQSLLPDLITYNTLIYGLCKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D V Y 
Sbjct: 297 DLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M       D  T+  ++  F +K
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKK 400



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGD----LKQA 301

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++++ M   G   KP+   Y +LIBG CK+  +D   +    M  + I  + +      
Sbjct: 302 HDLIDDMSMKG--LKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALI 359

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+   L P   TYT ++N +C  G V     L   M R G  
Sbjct: 360 SGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHA 419

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 420 PSVVTYNVLMNG 431


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 158/330 (47%), Gaps = 27/330 (8%)

Query: 24  DVTF-NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           DVT   +L+ G C  G++ +A ++  +M   G  PN  T   L+ G    G       L 
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL- 136
           +EM  G     G+ +PN++ Y  LI   C+    ++ + LF EM  +GI     + NTL 
Sbjct: 97  EEMRRG-----GV-EPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLI 150

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  KL +A +LL++M   G  P I T+  L++GY   GK++ A+  F+ M   GF 
Sbjct: 151 AGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQ 210

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P   +Y++LI G+C+  ++  A             +  ++MK   + P   T  I ID  
Sbjct: 211 PSAVTYNMLIAGFCRARDMTRA------------NRALSDMKERGLEPTKVTYTILIDSF 258

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            +  H+ +  E+   +E +  E+    +  L+R  C  G  + A +LF  +  K +    
Sbjct: 259 ARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSN 318

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENG 344
           V Y+++I+  G+EG   K   L++ M + G
Sbjct: 319 VIYDMMIYGYGREGSSYKALKLIMEMRQKG 348



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 12/225 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK   + EA R+ + M   GL P   TYT L++GY   G+     ALF+ M R G  P++
Sbjct: 49  CKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNL 108

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           ++Y+ LI  +C+    E A            + +F+EM +  +V    + N  I GLC++
Sbjct: 109 YTYNCLIGEWCRTGEFERA------------RSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + +  +L   +        +  FN L+ G  K G    A   FN++         V Y
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTY 216

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N+LI    +   + + N  L  M+E G      T+  L+ SF ++
Sbjct: 217 NMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARE 261



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 116/257 (45%), Gaps = 26/257 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++N+LI G C  G + DA++L+  M T G RP++ T + L+ G  + G M+  L   
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFF 201

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M          ++P+   Y  LI G C+ R + +      +MK++G+    +      
Sbjct: 202 NQMK------AAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILI 255

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               ++  + +A  +L  M + GL     TY  L+   C+ G +  A  LF SM  KG  
Sbjct: 256 DSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVE 315

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P    Y ++I GY +  +  +A+            K+  EM+   ++P + +  + I  L
Sbjct: 316 PSNVIYDMMIYGYGREGSSYKAL------------KLIMEMRQKGLIPNSASYGLTIRVL 363

Query: 255 CKNGHVLEVMELFPTLE 271
           CK+    E   L   +E
Sbjct: 364 CKDDKCQEAEALLDDME 380



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 173 CLVGKVNVAIALFDSMARKGFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           C  G V  A+A+     + G    DV + + L+NG CK  +V EA            +++
Sbjct: 13  CAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEA------------RRV 60

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F+EM L  + P   T    + G   +G   +   LF  +     E  +  +N LI   C+
Sbjct: 61  FDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCR 120

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G FE A  LF+++  + +V +VV+YN LI  L + G++     LL  M   G    + T
Sbjct: 121 TGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIIT 180

Query: 352 FNTLMISF 359
           FN L+  +
Sbjct: 181 FNLLVDGY 188



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 12/194 (6%)

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L+NG C  G V  A  +FD M   G  P+  +Y+ L++GY  +   E+          
Sbjct: 42  TALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREK---------- 91

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
            GF  +F EM+   V P  +T N  I   C+ G       LF  + +      V  +N+L
Sbjct: 92  -GFA-LFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTL 149

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G C+ G    A++L + +  +     ++ +N+L+   GK G++         M+  G 
Sbjct: 150 IAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGF 209

Query: 346 ALDVDTFNTLMISF 359
                T+N L+  F
Sbjct: 210 QPSAVTYNMLIAGF 223


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 163/349 (46%), Gaps = 45/349 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    + AF   I  C  P +   FN L+  FC EG+IR A  +   +  +G RP+V + 
Sbjct: 115 KYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSY 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G++N   KL   M        G+ +P+V+ Y  LI+GLCK+         
Sbjct: 175 NTLMNGYIRLGDLNEGFKLKSAM-----HASGV-QPDVYTYSVLINGLCKE--------- 219

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L E M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 220 ------------------SKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK   + +A ++  EM + G K            P
Sbjct: 262 EVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLK------------P 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 310 DKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMM 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G A  V T
Sbjct: 370 REMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 160/344 (46%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +    NL    ++E++
Sbjct: 69  FSGLITAYLESGFLRDAVECYRLTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAFYEEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLCKKT 141
                    Y  +++ +  L+   CK+  +   + +F  +   G     ++ NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYI 182

Query: 142 KLVEAN---RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +L + N   +L   M   G+ P ++TY+ L+NG C   K++ A  LF+ M  KG +P+  
Sbjct: 183 RLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM V ++M+              +++P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEVYKQMLSQ------------SLLPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 291 ALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      ++  M   G   D  T+  ++  F +K
Sbjct: 351 ALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKK 394


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 153/343 (44%), Gaps = 31/343 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           + N L+K     G ++DA Q   +M++    P+V T  T++ G    G +   +KL  EM
Sbjct: 257 SHNILLKALLSAGRLKDACQHFDEMSS---PPDVVTYGTMVHGYCVRGELENAVKLLDEM 313

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
              G+       + N   Y S+I  LC    V     +  +M   G+  + ++       
Sbjct: 314 AAKGL-------ESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISG 366

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C K  L  A RL E M +RGL     T+T L+NG C  G++  A  +   M  KG   D
Sbjct: 367 FCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVD 426

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+VLI+GYCK  N+ EA             ++ NEM    V P   T     DGLCK
Sbjct: 427 VVTYTVLIDGYCKRGNMVEAF------------RVHNEMVGRRVAPNVVTYTALSDGLCK 474

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V    EL   +     EL V  +NSLI G CKFG  E A  +  ++       DV  
Sbjct: 475 QGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYT 534

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y  LI  L K G+  + + +L  M + G    + T+N LM  F
Sbjct: 535 YTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGF 577



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 182/370 (49%), Gaps = 32/370 (8%)

Query: 4   VLGALMAFGSFIRRCYR------PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRP 57
           +L AL++ G     C        P + VT+ +++ G+C+ G + +A +L+ +MA  G   
Sbjct: 261 LLKALLSAGRLKDACQHFDEMSSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLES 320

Query: 58  NVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD 117
           N T   ++I  L   G ++  L++ ++M        G+   +   + ++I G C    + 
Sbjct: 321 NATVYTSVIALLCNKGQVSDALRVLEDMT-----MHGVAL-DAVVFTTVISGFCSKGDLA 374

Query: 118 QTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
             + LF EM+ +G+ A+ +        LC+  +L EA+R+L+ M+ +GL+  + TYT L+
Sbjct: 375 AARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLI 434

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           +GYC  G +  A  + + M  +   P+V +Y+ L +G CK  +V  A  +  EM   G +
Sbjct: 435 DGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLE 494

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                    NV    +T N  I+GLCK G++ + M +   +E +     V  + +LI   
Sbjct: 495 --------LNV----YTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTL 542

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G F+ A  +  ++  K +   +  YN+L++     G+++    LL  M E     +V
Sbjct: 543 CKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNV 602

Query: 350 DTFNTLMISF 359
            T+N+LM  +
Sbjct: 603 VTYNSLMKQY 612



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 161/350 (46%), Gaps = 27/350 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ V F ++I GFC +G++  A +L ++M   G   +  T   LI GL R G +    ++
Sbjct: 355 LDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRV 414

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            QEMV+   D       +V  Y  LIDG CK   + +   +  EM  + +  N +     
Sbjct: 415 LQEMVDKGLDV------DVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTAL 468

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+  +  AN LL  M  +GL   ++TY  L+NG C  G +  A+ +   M   G 
Sbjct: 469 SDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGH 528

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             DV++Y+ LI+  CK+   + A N+ +EM+  G K            P   T N+ ++G
Sbjct: 529 RTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIK------------PSIATYNVLMNG 576

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C +G V    +L   +   N    V  +NSL++  C     +  +E++  +  + +  +
Sbjct: 577 FCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPN 636

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              YNILI    K   +K+  Y    M E G  L   +++ L I  L K+
Sbjct: 637 ENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSAL-IRLLNKK 685



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 139/302 (46%), Gaps = 26/302 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+  LI G+C  GN+ +A ++  +M      PNV T   L  GL + G++    +L  E
Sbjct: 428 VTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHE 487

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M N   +       NV+ Y SLI+GLCK   ++Q   +  EM+  G   +          
Sbjct: 488 MCNKGLEL------NVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDT 541

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  +   A+ +L+ M+ +G+ P I TY  L+NG+C+ G+V     L + M  K   P+
Sbjct: 542 LCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPN 601

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ L+  YC + N++               +I+  M    V P   T NI I G CK
Sbjct: 602 VVTYNSLMKQYCIDKNMKSTT------------EIYKGMHSQEVAPNENTYNILIKGHCK 649

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             ++ E +     +      L    +++LIR   K   F  A   F+K+  + L A+   
Sbjct: 650 ARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDV 709

Query: 317 YN 318
           Y+
Sbjct: 710 YS 711



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 15/195 (7%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           LL      G++  A   FD M+     PDV +Y  +++GYC    +E A+ +  EM   G
Sbjct: 261 LLKALLSAGRLKDACQHFDEMSSP---PDVVTYGTMVHGYCVRGELENAVKLLDEMAAKG 317

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
            +         N     +T  I +  LC  G V + + +   + +    L   +F ++I 
Sbjct: 318 LES--------NAT--VYTSVIAL--LCNKGQVSDALRVLEDMTMHGVALDAVVFTTVIS 365

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C  G    A  LF ++  + L AD V +  LI+ L + G++K+ + +L  M + G  +
Sbjct: 366 GFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDV 425

Query: 348 DVDTFNTLMISFLQK 362
           DV T+  L+  + ++
Sbjct: 426 DVVTYTVLIDGYCKR 440



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 39/223 (17%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T+NSLI G C  GN+  A +++ +M   G R +V T  TLI  L ++G  +    +
Sbjct: 495 LNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNM 554

Query: 82  HQEMVN-GMGDFGGIY----------------------------KPNVFCYGSLIDGLCK 112
            QEM++ G+      Y                            +PNV  Y SL+   C 
Sbjct: 555 LQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCI 614

Query: 113 DRLVDQTKDLF--MEMKDKGINANTL------LCKKTKLVEANRLLELMMQRGLNPVIFT 164
           D+ +  T +++  M  ++   N NT        CK   + EA    + M+++GL     +
Sbjct: 615 DKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASS 674

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFM--PDVFSYSVLIN 205
           Y+ L+       K + A   FD M  +G    PDV+S+ + I+
Sbjct: 675 YSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDIS 717



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + +V G        + +  RP N VT+NSL+K +C++ N++  +++ K M +    PN  
Sbjct: 580 SGRVEGGKKLLEWMLEKNVRP-NVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNEN 638

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T + LI G  +  NM   L  HQEM+       G+ +     Y +LI  L K +   + +
Sbjct: 639 TYNILIKGHCKARNMKEALYFHQEMIE-----KGL-RLTASSYSALIRLLNKKKKFSEAR 692

Query: 121 DLFMEMKDKGINA 133
             F +M+++G+ A
Sbjct: 693 VFFDKMRNEGLTA 705


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 164/338 (48%), Gaps = 39/338 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN ++   C EG ++ A + +  M   G +PNV + +T+I G    GN+    ++   M
Sbjct: 229 TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAM 288

Query: 86  -VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
            V G+       +P+ + YGSLI G+CK+  +++   LF +M + G     +  NTL+  
Sbjct: 289 RVKGI-------EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDG 341

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C K  L  A    + M+++G+ P + TY  L++   + G++  A  +   M +KG +PD
Sbjct: 342 YCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPD 401

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF-------------NEMKLCN---- 239
             +Y++LINGY +  N ++A ++  EM+  G +                N MK  +    
Sbjct: 402 AITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFE 461

Query: 240 ------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                 V P+    N  +DG C NG+V     L   ++  +       FN+L++G C+ G
Sbjct: 462 KILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREG 521

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
             E A  L +++  + +  D ++YN LI   G+ G IK
Sbjct: 522 KVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIK 559



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 161/365 (44%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + + F+ L++  C      +A +    M   G  P + TC+ +++   +   M +   L+
Sbjct: 156 SSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLY 215

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL--FME---MKDKGINANTLL 137
            EM      F       V+ +  +++ LCK+  + + ++   FME    K   ++ NT++
Sbjct: 216 AEM------FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTII 269

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
                +  +  A R+L+ M  +G+ P  +TY  L++G C  G++  A  LFD M   G +
Sbjct: 270 HGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLV 329

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
           P+  +Y+ LI+GYC   ++E A +   EM+  G                          +
Sbjct: 330 PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDM 389

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
             EM+   ++P+  T NI I+G  + G+  +  +L   +     E     + SLI    +
Sbjct: 390 IKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 449

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               + A +LF K+  + +  DV+ +N ++      G +++   LL  M+      D  T
Sbjct: 450 RNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVT 509

Query: 352 FNTLM 356
           FNTLM
Sbjct: 510 FNTLM 514



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 26/240 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N L+    MEG + +A  ++K+M   G  P+  T + LI G  R GN      LH EM
Sbjct: 369 TYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEM 428

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
           ++      GI +P    Y SLI  L +   + +  DLF ++ D+G++ + ++        
Sbjct: 429 LSK-----GI-EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGH 482

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C    +  A  LL+ M ++ + P   T+  L+ G C  GKV  A  L D M R+G  PD 
Sbjct: 483 CANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDH 542

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY+ LI+GY +  ++++A  V  EM+  GF             P   T N  I  LCKN
Sbjct: 543 ISYNTLISGYGRRGDIKDAFRVRDEMLSIGFN------------PTLLTYNALIKCLCKN 590



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ SLI        +++A  L +K+   G  P+V   + ++ G    GN+     L +E
Sbjct: 438 VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKE 497

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLC- 138
           M     D   +  P+   + +L+ G C++  V++ + L  EMK +GI       NTL+  
Sbjct: 498 M-----DRKSV-PPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 551

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             ++  + +A R+ + M+  G NP + TY  L+   C   + ++A  L   M  KG  PD
Sbjct: 552 YGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 611

Query: 197 VFSYSVLING 206
             +Y  LI G
Sbjct: 612 DSTYLSLIEG 621



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 69/114 (60%), Gaps = 6/114 (5%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P ++VTFN+L++G C EG + +A  L+ +M   G +P+  + +TLI+G  R G++    +
Sbjct: 504 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFR 563

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           +  EM++ +G     + P +  Y +LI  LCK++  D  ++L  EM +KGI+ +
Sbjct: 564 VRDEMLS-IG-----FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 611



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 12/190 (6%)

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C + + + A   F  M  KG +P + + + +++ + K   +E A  +  EM         
Sbjct: 168 CELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMF-------- 219

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
             +++ + V   +T NI ++ LCK G + +  E    +E    +  V  +N++I G    
Sbjct: 220 -RLRISSTV---YTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSR 275

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  E A  + + +  K +  D   Y  LI  + KEG++++ + L   M E G   +  T+
Sbjct: 276 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 335

Query: 353 NTLMISFLQK 362
           NTL+  +  K
Sbjct: 336 NTLIDGYCNK 345


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 170/367 (46%), Gaps = 32/367 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  +I G    G + +A ++   M   GCRP+      LI+GL + G ++  L    +M
Sbjct: 148 TYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQM 207

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK----GINANTL---LC 138
           V   G   G+ +P+V  +  +I  LC    ++     F E+ D         N L   LC
Sbjct: 208 VEN-GCARGV-EPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALC 265

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  +  EA   ++ M +R   P +FTYT L++G+  +G+++ A+        +GF+PD  
Sbjct: 266 KAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAV 325

Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEM 235
           +Y+ +I+G CK   VEE      EM              +++GF K         ++ +M
Sbjct: 326 TYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQM 385

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                V  T T NI +DGLCK G V E    F  +E   C   V  +++L+ G C  G  
Sbjct: 386 LQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNV 445

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
             A ELF ++  +    ++V+YNI+I  L + G++ K  +    + +     DV TFN+ 
Sbjct: 446 SAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSF 505

Query: 356 MISFLQK 362
           +    Q+
Sbjct: 506 LHGLCQR 512



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 64/381 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N  I G C    + DA QL+KKM    C P   T   L+ GL + G ++  + + ++
Sbjct: 77  VTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQ 136

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV           P +  Y  +IDGL K   V++ + +F++M   G   +          
Sbjct: 137 MVEKGN------SPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISG 190

Query: 137 LCKKTKLVEA----NRLLELMMQRGLNPVI------------------------------ 162
           L K  KL EA    N+++E    RG+ P +                              
Sbjct: 191 LAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSL 250

Query: 163 ----FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
               FT+ PL+   C   +   AIA    M+ +   P +F+Y+ L++G+ K   ++EA+ 
Sbjct: 251 DLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALL 310

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
             +E +  GF            +P+  T    IDGLCK G V E  E F  +     E  
Sbjct: 311 QLKEAVERGF------------IPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPD 358

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
              + +LI G  K  +   A  ++ ++     V   V YNI++  L K G++ +     L
Sbjct: 359 AVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFL 418

Query: 339 SMEENGCALDVDTFNTLMISF 359
           +MEE GC   V T++ LM  F
Sbjct: 419 AMEERGCVATVVTYSALMDGF 439



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 173/372 (46%), Gaps = 49/372 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT-LK 80
           L   TFN L+   C      +A   VKKM+   C P + T  +L+ G  + G ++   L+
Sbjct: 252 LTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQ 311

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L + +  G       + P+   Y S+IDGLCK   V++  + F EM+++G   + +    
Sbjct: 312 LKEAVERG-------FIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAA 364

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K   + +A+R+   M+Q G      TY  +L+G C  G+V  A A F +M  +G
Sbjct: 365 LIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERG 424

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG------------------------- 227
            +  V +YS L++G+C   NV  A+ + R M+  G                         
Sbjct: 425 CVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAY 484

Query: 228 --FKKIFNEMKLCNVVPETFTCNIFIDGLCKN-GHVLEVMELFPTLEISNCELFVEIFNS 284
             F+K+  + +LC   P+ +T N F+ GLC+    V + +ELF ++        +  ++ 
Sbjct: 485 FYFEKLL-QRRLC---PDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSI 540

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           L+ G C+ G  E+  E+F+++  + +  DVV +N LI  L   G++ +   +   +E   
Sbjct: 541 LMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRS 600

Query: 345 CALDVDTFNTLM 356
            A D  ++ +L+
Sbjct: 601 -APDAWSYWSLL 611



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 167/363 (46%), Gaps = 41/363 (11%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           RRC+  L   T+ SL+ GF   G + +A   +K+    G  P+  T  ++I GL + G +
Sbjct: 283 RRCFPTL--FTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRV 340

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
               +   EM N        Y+P+   Y +LIDG  K +++ +   ++ +M   G   +T
Sbjct: 341 EEGCERFHEMRNRG------YEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVST 394

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +        LCK  ++ EA      M +RG    + TY+ L++G+C  G V+ A+ LF  
Sbjct: 395 VTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRR 454

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGF----- 228
           M  +G  P++ SY+++I G C+   + +A     +++              L+G      
Sbjct: 455 MLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLD 514

Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                 ++F  M      P   + +I +DG+C+ G +   +E+F  +        V +FN
Sbjct: 515 TVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFN 574

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LIR  C  G  + A E+F +L  +    D  +Y  L+ AL +  ++++   L   M+  
Sbjct: 575 TLIRWLCIAGRVDEALEVFRELE-RRSAPDAWSYWSLLDALSRCERMEEARLLSFHMKLQ 633

Query: 344 GCA 346
           GCA
Sbjct: 634 GCA 636



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 148/337 (43%), Gaps = 26/337 (7%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
            +L+ G C  G +  A  L+ +M    C P++     +I GL R   ++    + +  V 
Sbjct: 13  TALLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAFSVLERAVR 69

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCK 139
              +      P+   Y   IDGLCK   VD    L  +M +K     T+        L K
Sbjct: 70  AGCE------PDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLK 123

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             +L EA  +LE M+++G +P + TYT +++G    G+V  A  +F  M   G  PD F 
Sbjct: 124 AGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFV 183

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+ LI+G  K   ++EA+    +M+ NG  +         V P+    N+ I  LC +G+
Sbjct: 184 YTALISGLAKIGKLDEALVYLNQMVENGCAR--------GVEPDVVIHNLVIRQLCASGN 235

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + + +  F  L+ S  +L    FN L+   CK    E A     K+S +     +  Y  
Sbjct: 236 LEDALAYFDELDDS-LDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTS 294

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L+    K G++ +    L    E G   D  T+ +++
Sbjct: 295 LVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSII 331



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 132/303 (43%), Gaps = 51/303 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL+     + R + P + VT+ S+I G C  G + +  +   +M   G  P+  T   LI
Sbjct: 308 ALLQLKEAVERGFIP-DAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALI 366

Query: 67  TGLRRTGNMNLTLKLHQEMV---------------NGMGDFGGIYKP------------- 98
            G  +   +    +++++M+               +G+   G + +              
Sbjct: 367 DGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV 426

Query: 99  -NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
             V  Y +L+DG C +  V    +LF  M D+G   N +        LC+  KL +A   
Sbjct: 427 ATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFY 486

Query: 150 LELMMQRGLNPVIFTYTPLLNGYC-LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
            E ++QR L P ++T+   L+G C  +  V   + LF+SM  +G  P++ SYS+L++G C
Sbjct: 487 FEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGIC 546

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           +   +E  + +  EM+  G            V P+    N  I  LC  G V E +E+F 
Sbjct: 547 RAGGLEVTLEIFHEMVSRG------------VAPDVVVFNTLIRWLCIAGRVDEALEVFR 594

Query: 269 TLE 271
            LE
Sbjct: 595 ELE 597



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 16/197 (8%)

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T LLNG C  G+++ A+ L D M      PD+ +++V+ING C+   ++EA +V    + 
Sbjct: 13  TALLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAFSVLERAVR 69

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
            G +            P+  T N+FIDGLCK   V +  +L   ++   C      + +L
Sbjct: 70  AGCE------------PDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTAL 117

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           + G  K G  + A  +  ++  K     +  Y ++I  L K G++++   + + M  NGC
Sbjct: 118 VDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGC 177

Query: 346 ALDVDTFNTLMISFLQK 362
             D   + T +IS L K
Sbjct: 178 RPDAFVY-TALISGLAK 193



 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +T  C   ++GLCK G +   M L   L+   C   +  F  +I G C+    + A  + 
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLL---LDEMPCSPDMVAFTVVINGLCREKRLDEAFSVL 64

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            +        D V YN+ I  L K  ++     LL  M+E  C     T+  L+   L+
Sbjct: 65  ERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLK 123


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 173/372 (46%), Gaps = 38/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           N V +N+LI G+   G   +A  L+   M   G  P+  T + +I GL + G +   L+L
Sbjct: 340 NTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALEL 399

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EMV         ++PNV  Y  LI+G CK   +++  ++   M  KG++ NT+     
Sbjct: 400 LNEMV------AKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCL 453

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK   + EA +L   M  +G  P I+T+  L+NG C   K+  A++L+  M  +G 
Sbjct: 454 ICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGV 513

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMIL----------NGFKK------------- 230
           + +  +Y+ L++ +    ++++A  +  EM+           NG  K             
Sbjct: 514 IANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLG 573

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F EM    + P   +CNI I GLC+ G V + ++    +        +  +NSLI G C
Sbjct: 574 LFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLC 633

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + AS LFNKL  + +  D + YN LI     EG       LL    ++G   +  
Sbjct: 634 KMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEV 693

Query: 351 TFNTLMISFLQK 362
           T++ L+   ++K
Sbjct: 694 TWSILINYIVKK 705



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 164/343 (47%), Gaps = 31/343 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI   C    + +A QL++ M    C P+V T + +I GL R G ++   KL 
Sbjct: 239 NSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLL 298

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
             M+       G +  +   YG L+ GLC+   VD+ + L     +K  N NT+L     
Sbjct: 299 DRML-----LRG-FSTDALTYGYLMHGLCRMGQVDEARALL----NKIPNPNTVLYNTLI 348

Query: 138 ---CKKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                  +  EA  LL   M+  G  P  +T+  +++G    G +  A+ L + M  K F
Sbjct: 349 SGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRF 408

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V +Y++LING+CK   +EEA             +I N M    +   T   N  I  
Sbjct: 409 EPNVITYTILINGFCKQGRLEEA------------AEIVNSMSAKGLSLNTVGYNCLICA 456

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK+G++ E ++LF  +    C+  +  FNSLI G CK    E A  L++ +  + ++A+
Sbjct: 457 LCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIAN 516

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            V YN L+HA      I++   L+  M   GC LD  T+N L+
Sbjct: 517 TVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLI 559



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 164/332 (49%), Gaps = 27/332 (8%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           ++ AL      + + + P N +T+  LI GFC +G + +A+++V  M+  G   N    +
Sbjct: 393 LVSALELLNEMVAKRFEP-NVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYN 451

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            LI  L + GN+   L+L  EM +G G      KP+++ + SLI+GLCK+  +++   L+
Sbjct: 452 CLICALCKDGNIEEALQLFGEM-SGKG-----CKPDIYTFNSLINGLCKNHKMEEALSLY 505

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            +M  +G+ ANT+           +  + +A +L++ M+ RG      TY  L+   C  
Sbjct: 506 HDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKT 565

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G V   + LF+ M  KG  P + S ++LI+G C+   V +A+   ++MI  G        
Sbjct: 566 GAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRG-------- 617

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               + P+  T N  I+GLCK GHV E   LF  L+          +N+LI   C  G+F
Sbjct: 618 ----LTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMF 673

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             A  L  K      + + V ++ILI+ + K+
Sbjct: 674 NDACLLLYKGVDSGFIPNEVTWSILINYIVKK 705



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 165/341 (48%), Gaps = 33/341 (9%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           +V  + L+ G C     R A  +   M + G  P V T   ++  L     ++    L +
Sbjct: 174 NVVLDILVDGDCP----RVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLR 229

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT----KDLFMEMKDKGINA-NTL-- 136
           +M       G +  PN   Y +LI  LC++  V +     +D+F+   +  +   N +  
Sbjct: 230 DMAK----HGCV--PNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIH 283

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LC+  ++ EA +LL+ M+ RG +    TY  L++G C +G+V+ A AL + +      P
Sbjct: 284 GLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN----P 339

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           +   Y+ LI+GY  +   EEA ++           ++N M +    P+ +T NI IDGL 
Sbjct: 340 NTVLYNTLISGYVASGRFEEAKDL-----------LYNNMVIAGYEPDAYTFNIMIDGLV 388

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G+++  +EL   +     E  V  +  LI G CK G  E A+E+ N +S K L  + V
Sbjct: 389 KKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTV 448

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            YN LI AL K+G I++   L   M   GC  D+ TFN+L+
Sbjct: 449 GYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLI 489



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 168/390 (43%), Gaps = 49/390 (12%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           ++V  AL         C  P  DV TFN +I G C  G I +A++L+ +M   G   +  
Sbjct: 254 NRVSEALQLLEDMFLMCCEP--DVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDAL 311

Query: 61  TCDTLITGLRRTGNM-----------NLTLKLHQEMVNGMGDFGGI-------------- 95
           T   L+ GL R G +           N    L+  +++G    G                
Sbjct: 312 TYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIA 371

Query: 96  -YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEA 146
            Y+P+ + +  +IDGL K   +    +L  EM  K    N +         CK+ +L EA
Sbjct: 372 GYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEA 431

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             ++  M  +GL+     Y  L+   C  G +  A+ LF  M+ KG  PD+++++ LING
Sbjct: 432 AEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLING 491

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            CKN  +EEA+++  +M L G            V+  T T N  +        + +  +L
Sbjct: 492 LCKNHKMEEALSLYHDMFLEG------------VIANTVTYNTLVHAFLMRDSIQQAFKL 539

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +    C L    +N LI+  CK G  E    LF ++  K +   +++ NILI  L +
Sbjct: 540 VDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCR 599

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            G++      L  M   G   D+ T+N+L+
Sbjct: 600 TGKVNDALKFLQDMIHRGLTPDIVTYNSLI 629



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 160/347 (46%), Gaps = 31/347 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF  ++K  CM   +  A  L++ MA  GC PN     TLI  L     ++  L+L ++M
Sbjct: 207 TFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDM 266

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                 F    +P+V  +  +I GLC+   + +   L   M  +G + + L        L
Sbjct: 267 ------FLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGL 320

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL-FDSMARKGFMPD 196
           C+  ++ EA  LL     +  NP    Y  L++GY   G+   A  L +++M   G+ PD
Sbjct: 321 CRMGQVDEARALL----NKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPD 376

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            ++++++I+G  K   +  A+ +  EM+   F+            P   T  I I+G CK
Sbjct: 377 AYTFNIMIDGLVKKGYLVSALELLNEMVAKRFE------------PNVITYTILINGFCK 424

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E  E+  ++      L    +N LI   CK G  E A +LF ++S K    D+  
Sbjct: 425 QGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYT 484

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +N LI+ L K  ++++   L   M   G   +  T+NTL+ +FL ++
Sbjct: 485 FNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRD 531



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 139/323 (43%), Gaps = 34/323 (10%)

Query: 51  ATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL 110
           A  G       C  LI  L   G+     K+ ++++  M D G ++K ++F    ++   
Sbjct: 91  AQKGYSHTFDACYLLIDKLGAVGD----FKVIEKLLKQMKDEGLLFKESLFIL--IMKHY 144

Query: 111 CKDRLVDQTKDLFMEM----------KDKGINANTLLCKKTKLVEANRLLELMMQRGLNP 160
            K  L  Q   L ++M          K   +  + L+      V  N   + M+ RG++P
Sbjct: 145 GKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYD-MLSRGVSP 203

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            ++T+  ++   C+V +V+ A +L   MA+ G +P+   Y  LI+  C+N  V EA+ + 
Sbjct: 204 TVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLL 263

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
            +M L           +C   P+  T N  I GLC+ G + E  +L   + +        
Sbjct: 264 EDMFL-----------MC-CEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDAL 311

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL-S 339
            +  L+ G C+ G  + A  L NK+   N     V YN LI      G+ ++   LL  +
Sbjct: 312 TYGYLMHGLCRMGQVDEARALLNKIPNPN----TVLYNTLISGYVASGRFEEAKDLLYNN 367

Query: 340 MEENGCALDVDTFNTLMISFLQK 362
           M   G   D  TFN ++   ++K
Sbjct: 368 MVIAGYEPDAYTFNIMIDGLVKK 390


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 170/359 (47%), Gaps = 29/359 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F + + R   P N  T+  LI+GF   G++  A QL+++M + G   N     TL+
Sbjct: 41  ALALFRNAMARICMP-NKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLM 99

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   G +   L+  + M            P+V  Y +L+  LCK    D+ + +  EM
Sbjct: 100 KGLCDAGRVVEALEHFRAMAKDCA-------PDVMTYTALVHALCKAGKFDEAQGMLREM 152

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC-LVGK 177
             +G   +T+        LCK     +A R+LE ++QRG+      +  ++   C     
Sbjct: 153 VAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNS 212

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           V +A  +   +  KGF P V  ++++ING+CK  +++ A  +   MI  G          
Sbjct: 213 VELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKG---------- 262

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
              VP  FT  I I GLCK   V E  +L   + +  C   V  ++++I G CK G  + 
Sbjct: 263 --CVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDD 320

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A ELF  +  +N   +VV +NILI  L K  +I++   L   M E GCA D+ T+N+L+
Sbjct: 321 AYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLI 379



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 172/347 (49%), Gaps = 29/347 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V   +L+KG C  G + +A +  + MA   C P+V T   L+  L + G  +    + 
Sbjct: 91  NAVVHTTLMKGLCDAGRVVEALEHFRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGML 149

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-NANTL----- 136
           +EMV   G       P+   + +LIDGLCK    +Q   +  ++  +G+ N++       
Sbjct: 150 REMV-AQG-----CAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETII 203

Query: 137 --LCKKTKLVE-ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             LC K   VE A+++L +++ +G  P +  +  ++NG+C    ++ A  L + M  KG 
Sbjct: 204 QRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGC 263

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P+VF++++LI G CK   V EA  +  +M++ G          C+  P   T +  I+G
Sbjct: 264 VPNVFTFTILITGLCKANRVGEAQQLLEKMVMGG----------CS--PNVVTYSTVING 311

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G V +  ELF  +E  NC   V   N LI G CK    E A +L++++       D
Sbjct: 312 LCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPD 371

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENG-CALDVDTFNTLMISF 359
           ++ YN LI  L K  Q+ +   L  ++ E+G  A +  T++TL   +
Sbjct: 372 IITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGY 418



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 166/354 (46%), Gaps = 32/354 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TF  LI G C    + +A QL++KM   GC PNV T  T+I GL + G ++   +L 
Sbjct: 266 NVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELF 325

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL- 136
           Q M            PNV  +  LIDGLCK + +++ + L+  M++ G     I  N+L 
Sbjct: 326 QLMERRN------CPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLI 379

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPV-IFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             LCK  ++ EA +L + + + G++     TY+ L +GY  +G++  A  +F  +  KGF
Sbjct: 380 DGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGF 439

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ +Y+ LI  YCK     E + +  EM   GF             P   T +  + G
Sbjct: 440 SPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFP------------PRVNTLSAVLGG 487

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN---L 310
           L +  H    ++LF ++    C     I+N ++ G  +    + A  +  ++  K     
Sbjct: 488 LFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKF 547

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM--ISFLQK 362
                A + L+ +L + G+      LL  M E G A  V ++N L+  +S LQ+
Sbjct: 548 NPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQR 601



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 24/345 (6%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT N LI G C    I +A QL  +M   GC P++ T ++LI GL ++  ++   +
Sbjct: 334 PPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQ 393

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL--- 136
           L Q +        G+   N   Y +L  G     R+ D  + +F  + DKG + +     
Sbjct: 394 LFQTIPE-----SGVSAANAVTYSTLFHGYAALGRMADACR-IFSMLVDKGFSPDLATYT 447

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 CK ++ VE   L+E M  +G  P + T + +L G         AI LFDSMA +
Sbjct: 448 SLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAAR 507

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G   D   Y++++ G  +    ++A+ V  E +++   + FN        P +   +  +
Sbjct: 508 GCTDDALIYNLVVEGMARASKHDKALAV-LEQVIDKRDRKFN--------PSSSAVDALV 558

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           + LC+ G   +  +L   +        V  +N L+ G  +   ++ A+++F  +      
Sbjct: 559 ESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPA 618

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++   N++I  L    ++     L+  M + GC  D++T NTL+
Sbjct: 619 PEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLI 663



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 103/258 (39%), Gaps = 51/258 (19%)

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF-- 193
           +LC+  +  EA  L    M R   P  FTY  L+ G+   G +++AI L + M   GF  
Sbjct: 31  MLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEG 90

Query: 194 --------------------------------MPDVFSYSVLINGYCKNFNVEEAMNVSR 221
                                            PDV +Y+ L++  CK    +EA  + R
Sbjct: 91  NAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLR 150

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG---HVLEVMELFPTLEISNCELF 278
           EM+  G              P+T T +  IDGLCK G       V+E      + N +  
Sbjct: 151 EMVAQG------------CAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAA 198

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
            E    + R C K+   E+AS++   +  K     V+ +N++I+   K   +     LL 
Sbjct: 199 FETI--IQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLE 256

Query: 339 SMEENGCALDVDTFNTLM 356
            M E GC  +V TF  L+
Sbjct: 257 VMIEKGCVPNVFTFTILI 274



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 12/210 (5%)

Query: 29  SLIKGFCMEGN-IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           S + G   EGN    A QL   MA  GC  +    + ++ G+ R    +  L + +++++
Sbjct: 482 SAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVID 541

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKTK 142
                   + P+     +L++ LC+    D  K L  +M ++G  A     N LL   ++
Sbjct: 542 KRDR---KFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSR 598

Query: 143 LV---EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           L    EA ++ E M+  G  P I T   +++  C   KV+ A  L   M++ G  PD+ +
Sbjct: 599 LQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIET 658

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFK 229
            + LI GYCK+   + A  +  EM   G +
Sbjct: 659 CNTLIGGYCKSGRADLARKLLEEMTEAGLE 688



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 13/195 (6%)

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           +F+    L+  C + +   A+ALF +   +  MP+ F+Y +LI G+    +++ A+ +  
Sbjct: 22  VFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLE 81

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
           EM  +GF+         N V  T      + GLC  G V+E +E F  +   +C   V  
Sbjct: 82  EMKSSGFEG--------NAVVHT----TLMKGLCDAGRVVEALEHFRAM-AKDCAPDVMT 128

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           + +L+   CK G F+ A  +  ++  +    D V ++ LI  L K G  ++   +L  + 
Sbjct: 129 YTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVI 188

Query: 342 ENGCALDVDTFNTLM 356
           + G       F T++
Sbjct: 189 QRGMGNSDAAFETII 203



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T N +I   C    + DA +LV++M+  GC P++ TC+TLI G  ++G  +L  KL +EM
Sbjct: 623 TVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEM 682

Query: 86  VNG 88
              
Sbjct: 683 TEA 685



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 59/160 (36%), Gaps = 34/160 (21%)

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F +     V    F+CN  +D LC+     E + LF       C      +  LIRG  
Sbjct: 9   LFFDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFS 68

Query: 291 KFGIFEIASELFNKLS----------------------------------CKNLVADVVA 316
             G  +IA +L  ++                                    K+   DV+ 
Sbjct: 69  SAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMT 128

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y  L+HAL K G+  +   +L  M   GCA D  TF+TL+
Sbjct: 129 YTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLI 168


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 170/366 (46%), Gaps = 38/366 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++  T+ +++KG C  G++  A  +VK+M   GCRPNV    TLI    +       +++
Sbjct: 415 ISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRV 474

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM        GI  P++FCY SLI GL K + +D+ +   +EM + G+  N       
Sbjct: 475 LKEMKE-----QGI-APDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF 528

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                + ++   A++ ++ M + G+ P     T L+N YC   KV  A + + SM  +G 
Sbjct: 529 ISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGI 588

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK--------- 230
           + D  +Y+VL+NG  KN  V++A  + REM              ++NGF K         
Sbjct: 589 LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASS 648

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           IF+EM    + P     N+ + G C++G + +  EL   + +         + ++I G C
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G    A  LF+++  K LV D   Y  L+    +   +++    +    + GCA    
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA-ITIFGTNKKGCASSTA 767

Query: 351 TFNTLM 356
            FN L+
Sbjct: 768 PFNALI 773



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 174/386 (45%), Gaps = 45/386 (11%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R C    N V    LI  +C +  + +A    + M   G   +  T   L+ GL +   
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++   ++ +EM  G G       P+VF YG LI+G  K   + +   +F EM ++G+  N
Sbjct: 608 VDDAEEIFREM-RGKG-----IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661

Query: 135 TLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            ++        C+  ++ +A  LL+ M  +GL+P   TY  +++GYC  G +  A  LFD
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV---------SREMILNG-------FKK 230
            M  KG +PD F Y+ L++G C+  +VE A+ +         S     N        F K
Sbjct: 722 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGK 781

Query: 231 IFNEMKLCNVV----------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
              + ++ N +          P   T NI ID LCK G++    ELF  ++ +N    V 
Sbjct: 782 TELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVI 841

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            + SL+ G  K G       +F++     +  D + Y+++I+A  KEG   K   L+  M
Sbjct: 842 TYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQM 901

Query: 341 -----EENGCALDVDTFNTLMISFLQ 361
                 ++GC L + T   L+  F +
Sbjct: 902 FAKNAVDDGCKLSISTCRALLSGFAK 927



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 153/380 (40%), Gaps = 87/380 (22%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           KV+ A  A+ S + +    L D  T+  L+ G      + DA ++ ++M   G  P+V +
Sbjct: 572 KVIEACSAYRSMVDQGI--LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFS 629

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
              LI G  + GNM     +  EMV  G+        PNV  Y  L+ G C+   +++ K
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGL-------TPNVIIYNMLLGGFCRSGEIEKAK 682

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L  EM  KG++ N +         CK   L EA RL + M  +GL P  F YT L++G 
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742

Query: 173 CLVGKVNVAIALFD---------------------------------------SMARKGF 193
           C +  V  AI +F                                        S  R G 
Sbjct: 743 CRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG- 801

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK--------- 230
            P+  +Y+++I+  CK  N+E A  +  +M              +LNG+ K         
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-----CELFVEIFNSL 285
           +F+E     + P+    ++ I+   K G   + + L   +   N     C+L +    +L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921

Query: 286 IRGCCKFGIFEIASELFNKL 305
           + G  K G  E+A ++   +
Sbjct: 922 LSGFAKVGEMEVAEKVMENM 941



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 147/348 (42%), Gaps = 48/348 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI   C  GN++     + K   F       T          T N++  LKL + M
Sbjct: 223 TYHMLIIAHCRAGNVQ-----LGKDVLFKTEKEFRTA---------TLNVDGALKLKESM 268

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +  G+        P  + Y  LIDGLCK + ++  K L +EM   G++ +          
Sbjct: 269 ICKGL-------VPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV---AIALFDSMARKGF 193
           L K      A  L+  M+  G+N   + Y   +   C++ K  V   A ALFD M   G 
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCI---CVMSKEGVMEKAKALFDGMIASGL 378

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P   +Y+ LI GYC+  NV +              ++  EMK  N+V   +T    + G
Sbjct: 379 IPQAQAYASLIEGYCREKNVRQGY------------ELLVEMKKRNIVISPYTYGTVVKG 426

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           +C +G +     +   +  S C   V I+ +LI+   +   F  A  +  ++  + +  D
Sbjct: 427 MCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +  YN LI  L K  ++ +    L+ M ENG   +  T+   +  +++
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIE 534



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 156/373 (41%), Gaps = 40/373 (10%)

Query: 13  SFIRRCYRPL-----NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           S I RC +       + V F  L  G+  +G I +A  +          P ++ C  L+ 
Sbjct: 135 SSIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLD 194

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
            L R   ++L   +++ MV     F      +V  Y  LI   C+   V   KD+  +  
Sbjct: 195 ALLRWNRLDLFWDVYKGMVERNVVF------DVKTYHMLIIAHCRAGNVQLGKDVLFKT- 247

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +K     TL      +  A +L E M+ +GL P+ +TY  L++G C + ++  A +L   
Sbjct: 248 EKEFRTATL-----NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVE 302

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------------------- 228
           M   G   D  +YS+LI+G  K  N + A  +  EM+ +G                    
Sbjct: 303 MDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGV 362

Query: 229 ----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
               K +F+ M    ++P+       I+G C+  +V +  EL   ++  N  +    + +
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +++G C  G  + A  +  ++       +VV Y  LI    +  +      +L  M+E G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 345 CALDVDTFNTLMI 357
            A D+  +N+L+I
Sbjct: 483 IAPDIFCYNSLII 495



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 31/211 (14%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++VL  LM  GSF R  +   NDVT+N +I   C EGN+  A +L  +M      P V T
Sbjct: 786 TEVLNRLMD-GSFDR--FGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVIT 842

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             +L+ G  + G       +  E +       GI +P+   Y  +I+   K+ +  +   
Sbjct: 843 YTSLLNGYDKMGRRAEMFPVFDEAIAA-----GI-EPDHIMYSVIINAFLKEGMTTKALV 896

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           L  +M  K  NA    CK +                    I T   LL+G+  VG++ VA
Sbjct: 897 LVDQMFAK--NAVDDGCKLS--------------------ISTCRALLSGFAKVGEMEVA 934

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
             + ++M R  ++PD  +   LIN  C + N
Sbjct: 935 EKVMENMVRLQYIPDSATVIELINESCISSN 965


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 168/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 117 KYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 176

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 177 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 221

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 222 ------------------SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 263

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 264 EIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLK------------P 311

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 312 DKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKML 371

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  +   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 372 REMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 425



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 133/275 (48%), Gaps = 20/275 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEAN 147
           Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    +   L E  
Sbjct: 134 YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 193

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  +++ LI+G+
Sbjct: 194 RLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGH 253

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CKN  V+ AM + + M+              +++P+  T N  I GLCK G + +   L 
Sbjct: 254 CKNGRVDLAMEIYKRMLSQ------------SLLPDLITYNTLIYGLCKKGDLKQAHHLI 301

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY  LI  L +E
Sbjct: 302 DEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQE 361

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           G+      +L  M   G   +  T+  ++  F +K
Sbjct: 362 GRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKK 396



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 16/193 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G++     L 
Sbjct: 242 NGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLI 301

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM + G+       KP+   Y +LIDG CK+  +D   +    M  + I  + +     
Sbjct: 302 DEMSMKGL-------KPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTAL 354

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G 
Sbjct: 355 ISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 414

Query: 194 MPDVFSYSVLING 206
           +P V +Y+VL+NG
Sbjct: 415 VPSVVTYNVLMNG 427


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 175/392 (44%), Gaps = 59/392 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   +   + P N  T+N LI+GFC  G +  A  +   M + G  PN +T +TL+
Sbjct: 16  ALRLFKEVLAGLFAP-NAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLL 74

Query: 67  TGLRRTGNMNLTLKLHQEMVNG-------------------------MGDFGGIYKPN-- 99
            GL   G M+  LKL +EM  G                         +     + K +  
Sbjct: 75  LGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSS 134

Query: 100 --VFCYGSLIDGLCKD----RLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVE 145
                Y  ++ GLC +      ++Q  + F EMK  G+  +        + L    ++ E
Sbjct: 135 VATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAE 194

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A+ L   M     +P I TY  L++GYC +G+   A +L   + + G+ P+VF+YS++IN
Sbjct: 195 AHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIIN 251

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
            YCK   VEEA  V  +MI +            N VP   T N  I G CK G + + ++
Sbjct: 252 CYCKLDKVEEAWEVFMKMIES------------NCVPNAVTFNTLIAGFCKAGMLEDAIK 299

Query: 266 LFPTLEISNCELFVEIFNSLIRGCC-KFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           LF  +E   C+  +  +N+LI   C K G    A +LFNKL    L   +V YN LI   
Sbjct: 300 LFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGF 359

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               ++ +       M E  CA +V T++ L+
Sbjct: 360 CDARRLSEAMQYFDEM-EGKCAPNVITYSILI 390



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 125/276 (45%), Gaps = 29/276 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL-RRTGNMNLTLKL 81
           N VTFN+LI GFC  G + DA +L  +M   GC+  + T +TLI  L ++ G +   + L
Sbjct: 277 NAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDL 336

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANTL---- 136
             ++       G    P +  Y SLI G C  R + +    F EM+ K   N  T     
Sbjct: 337 FNKLE------GAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILI 390

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ EA + LE M   G  P + TY  L+NG+C  G++  A+  F+ M   G  
Sbjct: 391 DGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCA 450

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+   ++ LI+G CK     + + +   M   G K            P+  T N  I GL
Sbjct: 451 PNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCK------------PDVITYNCLISGL 498

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           C    V +   LF  +    C   V  FN LIRG C
Sbjct: 499 CSANRVEDAQRLFDGMA---CAPNVTTFNFLIRGLC 531



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 155/345 (44%), Gaps = 42/345 (12%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N L+ G+C  G   +A  L+K++   G  PNV T   +I    +   +    ++  +
Sbjct: 209 MTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMK 268

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL--- 136
           M+           PN   + +LI G CK  +++    LF EM+  G  A     NTL   
Sbjct: 269 MIESN------CVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDS 322

Query: 137 LCKKTKLV-EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
           LCKK   V  A  L   +   GL P I TY  L+ G+C   +++ A+  FD M  K   P
Sbjct: 323 LCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK-CAP 381

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IF 232
           +V +YS+LI+G CK   ++EA     +M              ++NGF K          F
Sbjct: 382 NVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFF 441

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            +MKL    P T   N  IDGLCK     + + L   +    C+  V  +N LI G C  
Sbjct: 442 EKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSA 501

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
              E A  LF+ ++C     +V  +N LI  L  + ++++   +L
Sbjct: 502 NRVEDAQRLFDGMAC---APNVTTFNFLIRGLCAQKKVEEARNIL 543



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 159/381 (41%), Gaps = 52/381 (13%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGN----IRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           +R+    +   T+N ++KG C E      +  A +  K+M   G  P++ +   L++ L 
Sbjct: 128 MRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALS 187

Query: 71  RTGNMNLTLKLHQEM------------VNGMGDFGGIYK--------------PNVFCYG 104
            +G M     L   M            ++G    G  Y+              PNVF Y 
Sbjct: 188 DSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYS 247

Query: 105 SLIDGLCKDRLVDQTKDLFMEMKDK-----GINANTLL---CKKTKLVEANRLLELMMQR 156
            +I+  CK   V++  ++FM+M +       +  NTL+   CK   L +A +L   M + 
Sbjct: 248 IIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKI 307

Query: 157 GLNPVIFTYTPLLNGYCL-VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           G    I TY  L++  C   G V  A+ LF+ +   G  P + +Y+ LI G+C    + E
Sbjct: 308 GCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSE 367

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           AM            + F+EM+     P   T +I IDGLCK   + E  +    ++    
Sbjct: 368 AM------------QYFDEME-GKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGY 414

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              V  +  LI G CK G  + A   F K+       + V +N LI  L K  +      
Sbjct: 415 TPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLR 474

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           LL  M   GC  DV T+N L+
Sbjct: 475 LLCHMHAEGCKPDVITYNCLI 495



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 148/336 (44%), Gaps = 44/336 (13%)

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + L++GL      +  L+L +E++       G++ PN   Y  LI G CK   + Q   +
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVL------AGLFAPNAHTYNVLIRGFCKGGQMHQAVSV 54

Query: 123 FMEMKDKGI--NANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F +MK  G+  NA+T+      LC+  ++  A +L   M      P   ++  LL G+ +
Sbjct: 55  FSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFM 114

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC---KNFN-VEEAMNVSREMILNGFKK 230
            G+V  A+A    M +        +Y++++ G C   K+ N +E+AM   +EM  +G + 
Sbjct: 115 AGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEP 174

Query: 231 -----------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
                                  +F+ M      P+  T N+ +DG CK G   E   L 
Sbjct: 175 DLESYHILLSALSDSGRMAEAHALFSAM---TCSPDIMTYNVLMDGYCKIGQTYEAQSLM 231

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +  +  E  V  ++ +I   CK    E A E+F K+   N V + V +N LI    K 
Sbjct: 232 KEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKA 291

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           G ++    L   ME+ GC   + T+NTL+ S  +K 
Sbjct: 292 GMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKR 327


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 166/351 (47%), Gaps = 27/351 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  A         +  +P N VT N ++K +C EG + DAS  + KM   G  P+  T
Sbjct: 362 SKISEAFKLLEEMSEKGVKP-NAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVT 420

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI G  + GNM    +   EM  G  +     K +     +++  LC+++ +++   
Sbjct: 421 YNTLINGYCKAGNMGEAFRTMDEM--GRKNM----KMDSVTLNTILRTLCREKKLEEAYK 474

Query: 122 LFMEMKDKG-----INANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L    + +G     ++  TL+    K   +  A +L + M ++ + P   TY  ++ G C
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLC 534

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             GK   AI+  + +   G +PD  +Y+ +++GYC+  +VE+A     +M+ N FK    
Sbjct: 535 QCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFK---- 590

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+ FTCNI + GLC  G + + ++LF T       +    +N+LI   CK G
Sbjct: 591 --------PDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEG 642

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             + A  L +++  K L  D   YN +I AL   G+I++    +  M E G
Sbjct: 643 RLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 170/368 (46%), Gaps = 37/368 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+ G+C  G +++A+ +++ M      P+V T + LI GL   G +    KL 
Sbjct: 277 NRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLR 336

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM N          P+V  Y +LI+G  +   + +   L  EM +KG+  N +      
Sbjct: 337 DEMENLK------LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMV 390

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+ K+ +A+  +  M + G +P   TY  L+NGYC  G +  A    D M RK   
Sbjct: 391 KWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMK 450

Query: 195 PDVFSYSVLINGYCKNFNVEEA---MNVSRE------------MILNGFK--------KI 231
            D  + + ++   C+   +EEA   ++ +R+            +I+  FK        K+
Sbjct: 451 MDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKL 510

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           ++EMK   ++P T T N  I GLC+ G   + +     L  S        +N+++ G C+
Sbjct: 511 WDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCR 570

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A +  NK+   +   DV   NIL+  L  EG ++K   L  +    G A+D  T
Sbjct: 571 EGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVT 630

Query: 352 FNTLMISF 359
           +NTL+ S 
Sbjct: 631 YNTLITSL 638



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 154/360 (42%), Gaps = 62/360 (17%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           AF   I+    P N  TFN +I G+C+E   +DA + +  M  + C P+  T +T     
Sbjct: 195 AFNDAIKLGIVP-NVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNT----- 248

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
                                               ++D LCK   +   +DL M+MK +
Sbjct: 249 ------------------------------------ILDALCKKGRLGDARDLLMDMKSR 272

Query: 130 GI--NANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           G+  N NT        CK   L EA  ++ELM Q  L P ++TY  L+NG C  G++  A
Sbjct: 273 GLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEA 332

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             L D M     +PDV SY+ LING  +   + EA  +  EM   G K            
Sbjct: 333 FKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVK------------ 380

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P   T NI +   CK G + +       +E S        +N+LI G CK G    A   
Sbjct: 381 PNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRT 440

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            +++  KN+  D V  N ++  L +E ++++   LL S  + G  +D  ++ TL++ + +
Sbjct: 441 MDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFK 500



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 169/345 (48%), Gaps = 26/345 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++VT+N+++   C +G + DA  L+  M + G  PN  T + L+ G  + G     LK  
Sbjct: 242 DNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMG----WLKEA 297

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLL 137
             ++  M     +  P+V+ Y  LI+GLC +  +++   L  EM++       ++ NTL+
Sbjct: 298 ANVIELMTQNNLL--PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLI 355

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               + +K+ EA +LLE M ++G+ P   T+  ++  YC  GK++ A      M   GF 
Sbjct: 356 NGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFS 415

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +Y+ LINGYCK  N+ EA             +  +EM   N+  ++ T N  +  L
Sbjct: 416 PDCVTYNTLINGYCKAGNMGEAF------------RTMDEMGRKNMKMDSVTLNTILRTL 463

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+   + E  +L  +       +    + +LI G  K G  + A +L++++  K ++   
Sbjct: 464 CREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPST 523

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V YN +I  L + G+ ++    L  + E+G   D  T+NT++  +
Sbjct: 524 VTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGY 568


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 162/342 (47%), Gaps = 45/342 (13%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N   FN L+ GFC  G++ +A  +  +++  G RP+V + +TLI+G  R+ N+     
Sbjct: 223 PPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFV 282

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           L   M +          P+VF Y +LI+GLCK+  V+                       
Sbjct: 283 LKSVMESER------ISPDVFTYSALINGLCKESRVE----------------------- 313

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
               EAN L + M + GL P   T+T L++G C  GK+++A+  F+ M  +G  PD+ +Y
Sbjct: 314 ----EANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITY 369

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + LING C++ +++EA  +  EMI NGFK            P+  T    +DG CK+G +
Sbjct: 370 NALINGLCRDGDLKEARKLLNEMIGNGFK------------PDKITFTTLMDGCCKDGDM 417

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
              +E+   +     EL    F +LI G C+ G    A  +   +       D   Y ++
Sbjct: 418 DSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMV 477

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           I    K+G +K    LL  M+ +G    V T+N LM  F ++
Sbjct: 478 IDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQ 519



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 26/248 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G I  A +  + M   G RP++ T + LI GL R G++    KL 
Sbjct: 330 NGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLL 389

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM+      G  +KP+   + +L+DG CKD  +D   ++   M ++GI  + +      
Sbjct: 390 NEMI------GNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALI 443

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  ++ +A R+L+ M+  G  P   TYT +++ +C  G V +   L   M R G +
Sbjct: 444 SGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRV 503

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P V +Y+ L+NG+CK   ++ A            K + + M    VVP   T NI +DG 
Sbjct: 504 PGVVTYNALMNGFCKQGQMKNA------------KMLLHAMLNMEVVPNDITFNILLDGH 551

Query: 255 CKNGHVLE 262
           CK+G  ++
Sbjct: 552 CKHGSSVD 559



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 20/208 (9%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           ++  G  P ++ +  L++G+C +G V  A  +FD ++R+G  P V S++ LI+GYC++ N
Sbjct: 217 VLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKN 276

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           VEE   +             + M+   + P+ FT +  I+GLCK   V E   LF  +  
Sbjct: 277 VEEGFVLK------------SVMESERISPDVFTYSALINGLCKESRVEEANGLFDEM-- 322

Query: 273 SNCELFV----EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
             CE+ +      F +LI G CK G  ++A   F  +  + +  D++ YN LI+ L ++G
Sbjct: 323 --CEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDG 380

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
            +K+   LL  M  NG   D  TF TLM
Sbjct: 381 DLKEARKLLNEMIGNGFKPDKITFTTLM 408


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 173/372 (46%), Gaps = 37/372 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++VT+ +L+ G C        + ++ +M   G  P      +L+ GLRR G +       
Sbjct: 295 SEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAF--- 351

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++VN +   G +  P++F Y +LI+ LCKD   D+ + LF EM +KG+ AN +      
Sbjct: 352 -DLVNRVKKVGAM--PSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILI 408

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C++ KL  A   L  M+  G+   ++ Y  L+NG+C +G ++ A++ FD M  KG  
Sbjct: 409 DSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLK 468

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           P V SY+ LI+GYC    + EA  +  EM   G                         ++
Sbjct: 469 PTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRL 528

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F+EM   N++P   T N+ I+G CK G+ ++  EL   +           +  LI   C 
Sbjct: 529 FDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCS 588

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A +  + L  ++   + + Y+ L+H   KEG+++    +   M + G  +D+  
Sbjct: 589 TGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVC 648

Query: 352 FNTLMISFLQKE 363
           +  L+   ++++
Sbjct: 649 YAVLIDGTIKEQ 660



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 168/396 (42%), Gaps = 73/396 (18%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +NSLI G C  GN+  A     +M   G +P V +  +LI+G    G ++   +L+ EM 
Sbjct: 439 YNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMT 498

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTLL-------- 137
                 G    PN + + +LI  L + +R+ D  + LF EM ++ +  N +         
Sbjct: 499 ------GKGIAPNTYTFTTLISALFRANRMTDAFR-LFDEMLEQNMMPNEVTYNVMIEGH 551

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+   V+A  LL  M+Q+GL P  +TY PL++  C  G+V  A    D + R+ F  + 
Sbjct: 552 CKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNE 611

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNE 234
             YS L++GYCK   + +A+ V REM+  G                          +   
Sbjct: 612 MCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKN 671

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    + P+       IDG  K G V +   ++  +    C   +  + +LI   CK G+
Sbjct: 672 MHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGL 731

Query: 295 FEIASELFNKLSCKN----------------------------------LVADVVAYNIL 320
            + A  L+ ++   N                                  L+A+ V+YNIL
Sbjct: 732 MDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNIL 791

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +    K G++++   LL  M +N    D  T++T++
Sbjct: 792 VRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTII 827



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 178/393 (45%), Gaps = 53/393 (13%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            +++  A   F   + +   P N+VT+N +I+G C EGN   A +L+ +M   G  P+  
Sbjct: 519 ANRMTDAFRLFDEMLEQNMMP-NEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTY 577

Query: 61  TCDTLITGLRRTGNMNLTLK----LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           T   LI+ L  TG +    K    LH+E           +K N  CY +L+ G CK+  +
Sbjct: 578 TYRPLISSLCSTGRVCEAKKFIDDLHREH----------FKLNEMCYSALLHGYCKEGRL 627

Query: 117 DQTKDLFMEMKDKGINANTLLC---------KKTKLVEANRLLELMMQRGLNPVIFTYTP 167
                +  EM  +G++ + L+C         K+        LL+ M  + L P    YT 
Sbjct: 628 RDALGVCREMVKRGVDMD-LVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTS 686

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +++GY   G V  A  ++D M  +G  P++ +Y+ LIN  CK   +++A  + +EM+++ 
Sbjct: 687 MIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSN 746

Query: 228 FK-----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
                                    ++ N+M L  ++  T + NI + G CK G V E  
Sbjct: 747 STPNHVTYCCFLDHLAREGSMEKAVQLHNDM-LKGLLANTVSYNILVRGFCKLGRVEEAT 805

Query: 265 ELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
           +L    E+ +  +F +   ++++I  CC+ G  + A E ++ +  K L  D +AYN LI+
Sbjct: 806 KLLD--EMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIY 863

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
                G++ K   L   M   G   +  T  +L
Sbjct: 864 GCCIAGELGKAFELRDDMIRRGVKPNQATHKSL 896



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 162/381 (42%), Gaps = 59/381 (15%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++ + F+ LI+ +  E  + D+  + + M      P V T   ++ GL +   +++ L L
Sbjct: 156 ISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVL 215

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA---NTL-- 136
             E+++ MG      +P+++ Y ++I   C+ +   + K++   M+   +N    N L  
Sbjct: 216 FGEILS-MG-----IRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVVVYNVLIH 269

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF-- 193
            LCK  ++ EA  +   ++Q+GL     TY  L+ G C V +  V   + D M   GF  
Sbjct: 270 GLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVP 329

Query: 194 ---------------------------------MPDVFSYSVLINGYCKNFNVEEAMNVS 220
                                            MP +F Y+ LIN  CK+   +EA  + 
Sbjct: 330 TEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLF 389

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
           +EM          E  LC       T +I ID  C+ G +   +     + ++  ++ V 
Sbjct: 390 KEM---------GEKGLC---ANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVY 437

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            +NSLI G CK G    A   F+++  K L   VV+Y  LI     +G++ +   L   M
Sbjct: 438 PYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEM 497

Query: 341 EENGCALDVDTFNTLMISFLQ 361
              G A +  TF TL+ +  +
Sbjct: 498 TGKGIAPNTYTFTTLISALFR 518



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 142/324 (43%), Gaps = 27/324 (8%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           + R +  LN++ +++L+ G+C EG +RDA  + ++M   G   ++     LI G  +  +
Sbjct: 602 LHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQD 661

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
            +    L + M +         +P+   Y S+IDG  K   V +   ++  M D+G   N
Sbjct: 662 TSAVFGLLKNMHDQR------LRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPN 715

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +        LCK   + +A  L + M+     P   TY   L+     G +  A+ L +
Sbjct: 716 IVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHN 775

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M  KG + +  SY++L+ G+CK   VEEA  +  EMI N             + P+  T
Sbjct: 776 DML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNA------------IFPDCIT 822

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            +  I   C+ G++   +E + T+     +     +N LI GCC  G    A EL + + 
Sbjct: 823 YSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMI 882

Query: 307 CKNLVADVVAYNILIHALGKEGQI 330
            + +  +   +  L H   ++  I
Sbjct: 883 RRGVKPNQATHKSLSHGASRKFSI 906


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 150/342 (43%), Gaps = 29/342 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N L+K  C  G ++DA QL  +MA+    P+V T   LI G    G +   +KL  EM
Sbjct: 261 SYNILLKALCDAGRVKDARQLFDEMASA---PDVVTYGILIHGHCALGELENAVKLLDEM 317

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
           V      GG+ +PN   Y S++  LC    +     +  +M  + +  +  L        
Sbjct: 318 VA-----GGV-EPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGF 371

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C K  LV A R  + M ++GL     TYT ++NG C   ++  A  L   M  +    D 
Sbjct: 372 CNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDE 431

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+VLI+GYCK   + EA  +   M+  G            V P   T     DGLCK 
Sbjct: 432 VTYTVLIDGYCKRGKMAEAFQMHNAMVQRG------------VTPNVVTYTALTDGLCKQ 479

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V    EL   +     EL    +NSLI G CK G  E A      +    L  DV  Y
Sbjct: 480 GDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTY 539

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             LI AL K G + + + LL  M + G    + T+N LM  F
Sbjct: 540 TTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 581



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 165/343 (48%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+  LI G C  G + +A +L+ +M   G  PN T   +++  L   G ++  L++ ++
Sbjct: 292 VTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVED 351

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV            +   Y +++ G C    +   +  F EM+ KG+  + +        
Sbjct: 352 MVQRKVIL------DEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMING 405

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+  +L EA +LL+ M  R L+    TYT L++GYC  GK+  A  + ++M ++G  P+
Sbjct: 406 LCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPN 465

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ L +G CK  +V+ A  +  EM   G      E+  C       T N  I+GLCK
Sbjct: 466 VVTYTALTDGLCKQGDVQAANELLHEMSNKGL-----ELNAC-------TYNSLINGLCK 513

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G++ + M     ++ +  +  V  + +LI   CK G  + A  L  ++  K +   +V 
Sbjct: 514 AGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVT 573

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           YN+L++     G+++    LL  M E     +  T+N+LM  +
Sbjct: 574 YNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQY 616



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 140/308 (45%), Gaps = 26/308 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +++VT+  LI G+C  G + +A Q+   M   G  PNV T   L  GL + G++    +L
Sbjct: 429 VDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANEL 488

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EM N   +       N   Y SLI+GLCK   ++Q      +M    +  +       
Sbjct: 489 LHEMSNKGLEL------NACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTL 542

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK   L  A+ LL+ M+ +G+ P I TY  L+NG+C+ G+V     L D M  K  
Sbjct: 543 IDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNI 602

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+  +Y+ L+  YC    +E  M  + E        I+  M+  +V P   T NI I G
Sbjct: 603 HPNAATYNSLMKQYC----IENNMKSTTE--------IYKGMRSRDVGPNENTYNILIKG 650

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK  ++ E +     +      L    +++LIR   K   F  A ELF+ +  + L A+
Sbjct: 651 HCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGLTAE 710

Query: 314 VVAYNILI 321
              Y+  I
Sbjct: 711 SDVYDFYI 718



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 149/337 (44%), Gaps = 26/337 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ ++I G C    + +A +L+++M       +  T   LI G  + G M    ++H  
Sbjct: 397 VTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNA 456

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV       G+  PNV  Y +L DGLCK   V    +L  EM +KG+  N          
Sbjct: 457 MVQR-----GV-TPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLING 510

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   L +A R +  M    L P ++TYT L++  C  G ++ A +L   M  KG  P 
Sbjct: 511 LCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPT 570

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+VL+NG+C +  VE            G KK+ + M   N+ P   T N  +   C 
Sbjct: 571 IVTYNVLMNGFCMSGRVE------------GGKKLLDWMLEKNIHPNAATYNSLMKQYCI 618

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             ++    E++  +   +       +N LI+G CK    + A    +++  K       +
Sbjct: 619 ENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATS 678

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           Y+ LI  L K+ +  +   L   M + G   + D ++
Sbjct: 679 YSALIRLLNKKKKFVEARELFHDMRKEGLTAESDVYD 715



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 155/350 (44%), Gaps = 27/350 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L++  + +++ GFC +G++  A +   +M   G   +  T  T+I GL R   +    KL
Sbjct: 359 LDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKL 418

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            QEM     D   +       Y  LIDG CK   + +   +   M  +G+  N +     
Sbjct: 419 LQEMWARRLDVDEV------TYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTAL 472

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+  +  AN LL  M  +GL     TY  L+NG C  G +  A+     M     
Sbjct: 473 TDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACL 532

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PDV++Y+ LI+  CK+ +++ A ++ +EM+  G K            P   T N+ ++G
Sbjct: 533 KPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIK------------PTIVTYNVLMNG 580

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C +G V    +L   +   N       +NSL++  C     +  +E++  +  +++  +
Sbjct: 581 FCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPN 640

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              YNILI    K   +K+  Y    M + G  L   +++ L I  L K+
Sbjct: 641 ENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSAL-IRLLNKK 689



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 23/248 (9%)

Query: 119 TKDLFMEMKDKGINANTLLC----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           +  L   ++  GI+ +   C     +  L EA  L + +  +     + +Y  LL   C 
Sbjct: 216 SAPLLRRLRQYGISPSPEACNAVLSRLPLDEAIELFQELPHKN----VCSYNILLKALCD 271

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G+V  A  LFD MA     PDV +Y +LI+G+C    +E A+ +  EM+  G       
Sbjct: 272 AGRVKDARQLFDEMAS---APDVVTYGILIHGHCALGELENAVKLLDEMVAGG------- 321

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                V P        +  LC  G + + + +   +      L   ++ +++ G C  G 
Sbjct: 322 -----VEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGD 376

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A   F+++  K L  D V Y  +I+ L +  ++++   LL  M      +D  T+  
Sbjct: 377 LVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTV 436

Query: 355 LMISFLQK 362
           L+  + ++
Sbjct: 437 LIDGYCKR 444


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 165/328 (50%), Gaps = 26/328 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N ++K  C EG + +A   ++K+A  G  P+V T +TLI    + GN+     L  E
Sbjct: 385 VTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDE 444

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLC- 138
           MV      G   K + F   +++  LCK +  +  ++L      +G     ++  T++  
Sbjct: 445 MV------GKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAA 498

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K+     A RL + M++R L P I TY  L+ G C + ++  AI   + +  KG +PD
Sbjct: 499 YFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPD 558

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+++I+ YCK  ++E A     +M+ N FK            P+  TCN  ++GLC 
Sbjct: 559 ETTYNIIIHAYCKEGDLENAFRFHNKMVENSFK------------PDVVTCNTLMNGLCL 606

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G + + ++LF +      ++ V  +N+LI+  CK G  + A   F+ +  K L  D   
Sbjct: 607 HGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFT 666

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
           YN+++ AL + G+ ++ + +L  + ++G
Sbjct: 667 YNVVLSALSEAGRSEEAHNMLHKLADSG 694



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 161/361 (44%), Gaps = 25/361 (6%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           +LG   A  + ++R        T+N+L+  F   G I+ A+++V+ M  +G  P++ T +
Sbjct: 258 MLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYN 317

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            L  GL + G ++   +L  EM     +      P+V  Y +L+D   K R       L 
Sbjct: 318 VLAVGLCQAGKVDEAFRLKDEM-----ERLSTALPDVVTYNTLVDACFKWRCSSDALRLL 372

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EM+DKG+    +        LCK+ KL EA   LE + + GL P + TY  L++ YC  
Sbjct: 373 EEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKA 432

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G V  A  L D M  KG   D F+ + ++   CK    E+A  +       GF       
Sbjct: 433 GNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGF------- 485

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                VP+  +    +    K  +    + L+  +        +  +N+LI+G C+    
Sbjct: 486 -----VPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERL 540

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + A +  N+L  K LV D   YNI+IHA  KEG ++        M EN    DV T NTL
Sbjct: 541 KEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTL 600

Query: 356 M 356
           M
Sbjct: 601 M 601



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 13/223 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C K  L +A   L  M   GL+P   TY  LLN +C  G +  A AL   M R G  P  
Sbjct: 219 CSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQ 278

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ L++ + +   +++A  V   M   GF+            P+  T N+   GLC+ 
Sbjct: 279 PTYNTLVSAFARLGWIKQATKVVESMTAYGFE------------PDLRTYNVLAVGLCQA 326

Query: 258 GHVLEVMELFPTLE-ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           G V E   L   +E +S     V  +N+L+  C K+     A  L  ++  K +   +V 
Sbjct: 327 GKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVT 386

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +NI++ +L KEG++++    L  + E G A DV T+NTL+ ++
Sbjct: 387 HNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAY 429



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 144/383 (37%), Gaps = 74/383 (19%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
            +L  F S I     P N  TFN L+   C +G + DA   +  M  FG  P+  T    
Sbjct: 191 ASLDVFRSLIELRLHP-NHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVT---- 245

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
                                                Y +L++  C+  ++ + + L   
Sbjct: 246 -------------------------------------YNTLLNAHCRKGMLGEARALLAR 268

Query: 126 MKDKGINA-----NTLLCKKTKL---VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           MK  GI       NTL+    +L    +A +++E M   G  P + TY  L  G C  GK
Sbjct: 269 MKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGK 328

Query: 178 VNVAIALFDSMAR-KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF---- 232
           V+ A  L D M R    +PDV +Y+ L++   K     +A+ +  EM   G K       
Sbjct: 329 VDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHN 388

Query: 233 -------NEMKLCNVV------------PETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
                   E KL   +            P+  T N  ID  CK G+V +   L   +   
Sbjct: 389 IVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGK 448

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             ++     N+++   CK   +E A EL +    +  V D V+Y  ++ A  KE   +  
Sbjct: 449 GLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPA 508

Query: 334 NYLLLSMEENGCALDVDTFNTLM 356
             L   M E      + T+NTL+
Sbjct: 509 LRLWDQMIERKLIPSISTYNTLI 531



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 145/331 (43%), Gaps = 35/331 (10%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           S  +R + P ++V++ +++  +  E N   A +L  +M      P+++T +TLI GL R 
Sbjct: 479 SPPQRGFVP-DEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRM 537

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-----K 127
             +   +    E+V       G+  P+   Y  +I   CK+  ++       +M     K
Sbjct: 538 ERLKEAIDKLNELVE-----KGLV-PDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFK 591

Query: 128 DKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
              +  NTL   LC   KL +A +L E  +++G    + TY  L+   C VG V+ A+  
Sbjct: 592 PDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHF 651

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
           FD M  KG  PD F+Y+V+++   +    EEA N+          K+ +  KL     ++
Sbjct: 652 FDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNM--------LHKLADSGKLS----QS 699

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISN--CELFVEIFNSLIRGCCKFGIFEIASELF 302
           F C +          V E  E  P  E S    +  +E +   + G C  G  + A  + 
Sbjct: 700 FACPLLKPSSADEADVKE-HEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVL 758

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
           +++  K +  D   Y  L+     EG IK++
Sbjct: 759 DEMMQKGMPVDSSTYITLM-----EGLIKRQ 784


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 167/355 (47%), Gaps = 30/355 (8%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R   PL   TFN +++  C  G    A +L+++M     RPN  T +T+I G    G + 
Sbjct: 34  RLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQ 89

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------ 130
             L + +EM     + GGI  PN + YG++I G CK   VD+   +F EM  KG      
Sbjct: 90  AALDIMREMR----ERGGI-APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEA 144

Query: 131 INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +  N L+   C + KL  A    + M++RG+   + TY  L++   + G+   A  L + 
Sbjct: 145 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 204

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  KG  PDVF+Y++LING+CK  NV++A+            +IF  M    V     T 
Sbjct: 205 MGGKGLAPDVFTYNILINGHCKEGNVKKAL------------EIFENMSRRGVRATVVTY 252

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              I  L K G V E  +LF           + ++N+LI      G  + A E+  ++  
Sbjct: 253 TSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 312

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           K +  D V YN L+  L   G++ +   L+  M + G   D+ T+NTL+  +  K
Sbjct: 313 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMK 367



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 174/378 (46%), Gaps = 44/378 (11%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRT 72
            +R+  RP N VT+N++I GFC  G ++ A  ++++M   G   PN  T  T+I+G  + 
Sbjct: 63  LLRQMPRP-NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 121

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC-----------KDRLVDQTKD 121
           G ++  +K+  EM+       G  KP    Y +LI G C           +DR+V++   
Sbjct: 122 GRVDEAVKVFDEMLTK-----GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVA 176

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           + +   +  ++A   L    +  EA  L+E M  +GL P +FTY  L+NG+C  G V  A
Sbjct: 177 MTVATYNLLVHA---LFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKA 233

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK------------ 229
           + +F++M+R+G    V +Y+ LI    K   V+E   +  E +  G +            
Sbjct: 234 LEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 293

Query: 230 -----------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                      +I  EM+   + P+  T N  + GLC  G V E  +L   +     +  
Sbjct: 294 HSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPD 353

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+LI G    G  + A  + N++  K     ++ YN LI  L K GQ      ++ 
Sbjct: 354 LVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVK 413

Query: 339 SMEENGCALDVDTFNTLM 356
            M ENG   D  T+ +L+
Sbjct: 414 EMVENGITPDDSTYISLI 431



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           +T+N+LI+G C  G   DA  +VK+M   G  P+ +T  +LI GL
Sbjct: 390 LTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 434


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 166/351 (47%), Gaps = 27/351 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  A         +  +P N VT N ++K +C EG + DAS  + KM   G  P+  T
Sbjct: 362 SKISEAFKLLEEMSEKGVKP-NAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVT 420

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI G  + GNM    +   EM  G  +     K +     +++  LC+++ +++   
Sbjct: 421 YNTLINGYCKAGNMGEAFRTMDEM--GRKNM----KMDSVTLNTILRTLCREKKLEEAYK 474

Query: 122 LFMEMKDKG-----INANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L    + +G     ++  TL+    K   +  A +L + M ++ + P   TY  ++ G C
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLC 534

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             GK   AI+  + +   G +PD  +Y+ +++GYC+  +VE+A     +M+ N FK    
Sbjct: 535 QCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFK---- 590

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+ FTCNI + GLC  G + + ++LF T       +    +N+LI   CK G
Sbjct: 591 --------PDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEG 642

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             + A  L +++  K L  D   YN +I AL   G+I++    +  M E G
Sbjct: 643 RLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 170/368 (46%), Gaps = 37/368 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+ G+C  G +++A+ +++ M      P+V T + LI GL   G +    KL 
Sbjct: 277 NRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLR 336

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM N          P+V  Y +LI+G  +   + +   L  EM +KG+  N +      
Sbjct: 337 DEMENLK------LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMV 390

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+ K+ +A+  +  M + G +P   TY  L+NGYC  G +  A    D M RK   
Sbjct: 391 KWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMK 450

Query: 195 PDVFSYSVLINGYCKNFNVEEA---MNVSRE------------MILNGFK--------KI 231
            D  + + ++   C+   +EEA   ++ +R+            +I+  FK        K+
Sbjct: 451 MDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKL 510

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           ++EMK   ++P T T N  I GLC+ G   + +     L  S        +N+++ G C+
Sbjct: 511 WDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCR 570

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A +  NK+   +   DV   NIL+  L  EG ++K   L  +    G A+D  T
Sbjct: 571 EGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVT 630

Query: 352 FNTLMISF 359
           +NTL+ S 
Sbjct: 631 YNTLITSL 638



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 154/360 (42%), Gaps = 62/360 (17%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           AF   I+    P N  TFN +I G+C+E   +DA + +  M  + C P+  T        
Sbjct: 195 AFNDAIKLGIVP-NVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVT-------- 245

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
                                            Y +++D LCK   +   +DL M+MK +
Sbjct: 246 ---------------------------------YNTILDTLCKKGRLGDARDLLMDMKSR 272

Query: 130 GI--NANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           G+  N NT        CK   L EA  ++ELM Q  L P ++TY  L+NG C  G++  A
Sbjct: 273 GLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEA 332

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             L D M     +PDV SY+ LING  +   + EA  +  EM   G K            
Sbjct: 333 FKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVK------------ 380

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P   T NI +   CK G + +       +E S        +N+LI G CK G    A   
Sbjct: 381 PNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRT 440

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            +++  KN+  D V  N ++  L +E ++++   LL S  + G  +D  ++ TL++ + +
Sbjct: 441 MDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFK 500



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 169/345 (48%), Gaps = 26/345 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++VT+N+++   C +G + DA  L+  M + G  PN  T + L+ G  + G     LK  
Sbjct: 242 DNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMG----WLKEA 297

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLL 137
             ++  M     +  P+V+ Y  LI+GLC +  +++   L  EM++       ++ NTL+
Sbjct: 298 ANVIELMTQNNLL--PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLI 355

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               + +K+ EA +LLE M ++G+ P   T+  ++  YC  GK++ A      M   GF 
Sbjct: 356 NGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFS 415

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +Y+ LINGYCK  N+ EA             +  +EM   N+  ++ T N  +  L
Sbjct: 416 PDCVTYNTLINGYCKAGNMGEAF------------RTMDEMGRKNMKMDSVTLNTILRTL 463

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+   + E  +L  +       +    + +LI G  K G  + A +L++++  K ++   
Sbjct: 464 CREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPST 523

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V YN +I  L + G+ ++    L  + E+G   D  T+NT++  +
Sbjct: 524 VTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGY 568


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 160/340 (47%), Gaps = 45/340 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L   FC EG+IR A  +   +  +G RP+V + +TL+ G  R G+++
Sbjct: 135 ECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              KL   M        G+  P+V+ Y  LI+GLCK+  +D                   
Sbjct: 195 EGFKLKSAM-----HASGV-XPDVYTYSVLINGLCKESKMDX------------------ 230

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
                    AN L + M+ +GL P   T+T L++G+C  G+V++A+ ++  M  +  +PD
Sbjct: 231 ---------ANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CK  ++ +A ++  EM + G K            P+  T    IDG CK
Sbjct: 282 LITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLK------------PDKITYTTLIDGCCK 329

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +    E    +   N  L    + +LI G C+ G    A ++  ++    L  D   
Sbjct: 330 EGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGT 389

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y ++I+ + K+G + K + LL  M+ +G A  V T+N LM
Sbjct: 390 YTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLM 429



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 153/338 (45%), Gaps = 26/338 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E +
Sbjct: 75  FSGLITAYLESGFLRDAVECYRLTREHKFWLPFDTCRKVLEHLMKLKYFKLVWGFYEEFL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L    CK+  +   + +F  +   G     ++ NTL+    
Sbjct: 135 ECG------YPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  +L   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 189 RLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK G
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNTLIYGLCKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 297 DLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            LI  L +EG+      ++  M   G   D  T+  ++
Sbjct: 357 ALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMII 394



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 13/227 (5%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+  +  A  + + + + GL P + +Y  L+NGY  +G ++    L  +M   G  PD
Sbjct: 152 FCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPD 211

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V++YSVLING CK    E  M+ + E+        F+EM +  +VP   T    IDG CK
Sbjct: 212 VYTYSVLINGLCK----ESKMDXANEL--------FDEMLVKGLVPNGVTFTTLIDGHCK 259

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG V   ME++  +   +    +  +N+LI G CK G    A +L +++S K L  D + 
Sbjct: 260 NGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKIT 319

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y  LI    KEG +         M +    LD D   T +IS L +E
Sbjct: 320 YTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYTALISGLCQE 365



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 16/193 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G++N    L 
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLI 305

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM + G+       KP+   Y +LIDG CK+  +D   +    M  + I  + +     
Sbjct: 306 DEMSMKGL-------KPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTAL 358

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ + V+A +++  M+  GL P   TYT ++N  C  G V     L   M   G 
Sbjct: 359 ISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGH 418

Query: 194 MPDVFSYSVLING 206
            P V +Y+VL+NG
Sbjct: 419 APSVVTYNVLMNG 431



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+DV + +LI G C EG   DA +++++M + G +P+  T   +I  + + G++    KL
Sbjct: 350 LDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKL 409

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDG 109
            +EM  +G       + P+V  Y  L++G
Sbjct: 410 LKEMQXDG-------HAPSVVTYNVLMNG 431


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 168/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G++N   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 181 NTLMNGYIRLGDLNEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 225

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 226 ------------------SKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G  K  ++++A ++  EM + G K            P
Sbjct: 268 EIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           + FT    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 316 DKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 376 REMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 158/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            + LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 75  LSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLCKKT 141
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 135 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 142 KLVEAN---RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +L + N   RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 189 RLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+             C ++P+  T N  I GL K G
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ-----------C-LLPDLITYNTLIYGLXKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 297 DLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKK 400



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGD----LKQA 301

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++++ M   G   KP+ F Y +LIDG CK+  +D   +    M  + I  + +      
Sbjct: 302 HDLIDEMSMKG--LKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALI 359

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G +
Sbjct: 360 SGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 420 PSVVTYNVLMNG 431


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 163/345 (47%), Gaps = 30/345 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LIK  C    IR A  ++++M+++G  P+  T  TL+ G    GNM+   ++ ++M
Sbjct: 195 TFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQM 254

Query: 86  VNG---MGDFGGIYKPNVFCYG-------SLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           ++    + +       + FC         S ID +  +       +L+ EMK+KG   + 
Sbjct: 255 LDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDE 314

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                    LC + KL EA  LL  M   G    + TY  L++G+C   K+  A  +FD 
Sbjct: 315 FTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQ 374

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +G   +  +Y+ LI+G CK+  V+EA  +  +MI+ G K            P+ FT 
Sbjct: 375 MEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLK------------PDKFTY 422

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           N  +   C+ G + +  ++  T+  + CE  +  + +LI G CK G  E+AS L   +  
Sbjct: 423 NSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQL 482

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           K +V    AYN +I AL K  + K+   L   MEE G   D  T+
Sbjct: 483 KGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTY 527



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 154/352 (43%), Gaps = 31/352 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++ TF +L++GF  EGN+  A ++ ++M   GC     T + L+ G  + G +   L   
Sbjct: 227 DEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFI 286

Query: 83  QEMVNGMGDFGGIY----------KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-- 130
            EM N       I           +P+ F Y  LID LC    + +   L  EM+  G  
Sbjct: 287 DEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCA 346

Query: 131 ---INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
              I  NTL+   CK  K+ EA  + + M  +GL+    TY  L++G C   +V  A  L
Sbjct: 347 RNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQL 406

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
            D M  +G  PD F+Y+ ++  +C+  ++++A ++ + M  NG          C   P+ 
Sbjct: 407 MDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNG----------CE--PDI 454

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T    I GLCK G V     L  ++++    L    +N +I+   K    + A  LF +
Sbjct: 455 VTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFRE 514

Query: 305 LSCKNLVADVVAYNILIHALGKE-GQIKKENYLLLSMEENGCALDVDTFNTL 355
           +  K    D   Y I+   L    G I +    ++ M E G   +  +F  L
Sbjct: 515 MEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYML 566



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 147/315 (46%), Gaps = 45/315 (14%)

Query: 50  MATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109
           M + G +P+V+T + LI  L +   +   + + +EM      +G +  P+   + +L+ G
Sbjct: 184 MVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEM----SSYGLV--PDEKTFTTLMQG 237

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPV 161
             ++  +D    +  +M D G     +         CK+ ++ EA   ++ M   G    
Sbjct: 238 FIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEG---- 293

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
                          K  +AI L++ M  KG  PD F+Y++LI+  C    ++EA+ + R
Sbjct: 294 ---------------KHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLR 338

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
           EM ++G  +        NV+    T N  IDG CKN  + E  E+F  +EI         
Sbjct: 339 EMEISGCAR--------NVI----TYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVT 386

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N+LI G CK    + A++L +++  + L  D   YN ++    +EG I+K   ++ +M 
Sbjct: 387 YNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMT 446

Query: 342 ENGCALDVDTFNTLM 356
            NGC  D+ T+ TL+
Sbjct: 447 SNGCEPDIVTYGTLI 461



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 4/227 (1%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  ++  A  ++E M   GL P   T+T L+ G+   G ++ A  + + M   G    
Sbjct: 203 LCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVT 262

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----KIFNEMKLCNVVPETFTCNIFID 252
             + +VL++G+CK   +EEA++   EM   G      +++NEMK     P+ FT N+ ID
Sbjct: 263 NVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLID 322

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LC  G + E + L   +EIS C   V  +N+LI G CK    E A E+F+++  + L  
Sbjct: 323 SLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSR 382

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + V YN LI  L K  ++++   L+  M   G   D  T+N+++  F
Sbjct: 383 NSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYF 429



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 31/251 (12%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I  C R  N +T+N+LI GFC    I +A ++  +M   G   N  T +TLI GL ++  
Sbjct: 342 ISGCAR--NVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRR 399

Query: 75  MNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
           +    +L  +M+  G+       KP+ F Y S++   C++  + +  D+   M   G   
Sbjct: 400 VQEAAQLMDQMIMEGL-------KPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEP 452

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           + +        LCK  ++  A+RLL  +  +G+      Y P++       +   A+ LF
Sbjct: 453 DIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLF 512

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFN-VEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
             M  KG  PD F+Y ++  G   +   + EA++   EMI  GF            +PE 
Sbjct: 513 REMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGF------------LPEF 560

Query: 245 FTCNIFIDGLC 255
            +  +  +GLC
Sbjct: 561 SSFYMLAEGLC 571



 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 1/139 (0%)

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-NCELFVEIFN 283
            N  K I  EMK  +   +     IFID   K     E++ +   +E+     L   ++N
Sbjct: 103 FNSMKDILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEILCIVEVMEVEFGLALDTLLYN 162

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            L+         ++   + + +  K +  DV  +NILI AL K  QI+    ++  M   
Sbjct: 163 FLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSY 222

Query: 344 GCALDVDTFNTLMISFLQK 362
           G   D  TF TLM  F+++
Sbjct: 223 GLVPDEKTFTTLMQGFIEE 241


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 160/330 (48%), Gaps = 26/330 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT N +IK FC EG I +AS ++ KM   G  P+  T +T+I G  + G M    K  
Sbjct: 385 NGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYK-- 442

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
             M++ MG  G   K + F   +L+  +C ++ +D    L M+ + +G     +   TL+
Sbjct: 443 --MMDEMGRKG--LKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLI 498

Query: 138 CKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K  +A+R L+L   M + G+   I TY  ++ G CL GK + A+   + +  KG +
Sbjct: 499 MGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLV 558

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  + +++I+GYC    VE+A     +M+ +  K            P+ FTCNI + GL
Sbjct: 559 PDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLK------------PDIFTCNILLRGL 606

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + + + LF T       +    +N +I   CK    E A +L  ++  KNL  D 
Sbjct: 607 CREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDR 666

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENG 344
             YN ++  L K G+ ++   L L   E G
Sbjct: 667 YTYNAIVTGLTKAGRTEEAEKLALKFAEKG 696



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 174/368 (47%), Gaps = 37/368 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+ G+C    +++A+++++ M   G  P+V T +T++ GL   G ++  ++L 
Sbjct: 280 NRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLR 339

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
            +M +    F  +  P+V  Y +LIDG  + R  D    L  EMK +G+  N        
Sbjct: 340 DKMES----FKLV--PDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMI 393

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C + K+ EA+ ++  M++ G +P  FTY  ++NGYC  GK+  A  + D M RKG  
Sbjct: 394 KWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLK 453

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSRE---------------MILNGFK--------KI 231
            D F+ + L++  C    +++A  ++ +               +I+  FK        K+
Sbjct: 454 LDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKL 513

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           + EMK   +V    T N  I GLC +G   + ++    L            N +I G C 
Sbjct: 514 WEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCW 573

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A +  NK+   +L  D+   NIL+  L +EG ++K   L  +    G  +D  T
Sbjct: 574 EGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVT 633

Query: 352 FNTLMISF 359
           +N ++ SF
Sbjct: 634 YNIIISSF 641



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 164/377 (43%), Gaps = 42/377 (11%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           +PL D +    +  + +        Q+  KM     RPN+ TC+TL+  L R+ N + +L
Sbjct: 138 KPLLDTS----LAAYVISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNALVRS-NSSHSL 192

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INAN 134
              +E+       G   +PNV  +  LI G C D   ++   L  +M + G     +  N
Sbjct: 193 VFSREVFQDAVKLG--VQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYN 250

Query: 135 TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           T+L   CK+++L +   LL  M   GL P   TY  L++GYC +  +  A  + + M  K
Sbjct: 251 TVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGK 310

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---------------------- 229
           G +PDV++Y+ ++ G C    ++EA+ +  +M    FK                      
Sbjct: 311 GMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKM--ESFKLVPDVVTYNTLIDGCFEHRGSD 368

Query: 230 ---KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
              K+  EMK   V     T NI I   C  G + E   +   +  S        +N++I
Sbjct: 369 AAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMI 428

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G CK G    A ++ +++  K L  D    N L+H +  E Q+     L +   + G  
Sbjct: 429 NGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYI 488

Query: 347 LDVDTFNTLMISFLQKE 363
           LD  T+ TL++ + + E
Sbjct: 489 LDEVTYGTLIMGYFKDE 505



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 147/349 (42%), Gaps = 50/349 (14%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+  T N+L+   C+E  + DA  L  K    G   +  T  TLI G  +    +  LKL
Sbjct: 454 LDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKL 513

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL 136
            +EM        GI    +  Y ++I GLC     DQ  D   E+ +KG+      +N +
Sbjct: 514 WEEMKET-----GIV-ATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNII 567

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   C +  + +A +    M++  L P IFT   LL G C  G +   + LF++   KG 
Sbjct: 568 IHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGK 627

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             D  +Y+++I+ +CK   +E+A +            +  EM+  N+ P+ +T N  + G
Sbjct: 628 PMDTVTYNIIISSFCKERRLEDAFD------------LMTEMEGKNLEPDRYTYNAIVTG 675

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           L K G   E  +L                        KF   E   ++  + +   L   
Sbjct: 676 LTKAGRTEEAEKL----------------------ALKFA--EKGQQVKTQDTSPELGTS 711

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            + Y+  I +L  +G+ K    L    E+ G +L+  T+  LM   L++
Sbjct: 712 DMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMDGLLKR 760



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 19/177 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
            L  F ++I +  +P++ VT+N +I  FC E  + DA  L+ +M      P+  T + ++
Sbjct: 615 GLTLFNTWISKG-KPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIV 673

Query: 67  TGLRRTGNMNLTLKLHQEMVN-----GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
           TGL + G      KL  +           D       +   Y   I  LC          
Sbjct: 674 TGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMK 733

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGL-----NPVIFTY 165
           LF + + KG++ N          L K+ K      LL  M+   +     NP+ + +
Sbjct: 734 LFQQAEQKGVSLNKYTYIKLMDGLLKRRKSFTTTSLLPFMVSATIQFFDRNPMRYAH 790


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 164/328 (50%), Gaps = 26/328 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N +IKG C +G +  A   + KMA  G  P+V T +TLI    + GN+     L  E
Sbjct: 381 VTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDE 440

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLC- 138
           MV       G+ K + F   +++  LCK++  ++ + L      +G     ++  T++  
Sbjct: 441 MVRR-----GL-KLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAA 494

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K+     A RL + M+++ L P I TY  L+ G   +G++  AI   + +  KG +PD
Sbjct: 495 YFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPD 554

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+++I+ YCK  ++E A     +M+ N FK            P+  TCN  ++GLC 
Sbjct: 555 DTTYNIIIHAYCKEGDLENAFQFHNKMVENSFK------------PDVVTCNTLMNGLCL 602

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG + + ++LF +      ++ V  +N+LI+  CK G  + A   F  +  + L  D   
Sbjct: 603 NGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFT 662

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
           YN+++ AL + G+ ++   +L  + E+G
Sbjct: 663 YNVVLSALSEAGRTEEAQNMLHKLAESG 690



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 169/378 (44%), Gaps = 66/378 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+   C +G + +A  L+ +M   G  P   T +TL++   R G +    K+ + 
Sbjct: 240 VTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEA 299

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTLL 137
           M  NG       ++P+++ Y  L  GLC+   VD+   L  EM+  G      +  NTL 
Sbjct: 300 MTANG-------FEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLA 352

Query: 138 --CKKTK-LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             C K +   +A RLLE M ++G+   + T+  ++ G C  G++  A+   + MA  G  
Sbjct: 353 DACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLA 412

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV +Y+ LI+ +CK  N+ +A  +  EM+  G K             +TFT N  +  L
Sbjct: 413 PDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKL------------DTFTLNTVLYNL 460

Query: 255 CKNGHVLEVMELF-----------------------------PTLEISNCELF------- 278
           CK     E   L                              P L + + E+        
Sbjct: 461 CKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWD-EMIEKKLTPS 519

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+LI+G  + G  + A +  N+L  K LV D   YNI+IHA  KEG ++       
Sbjct: 520 ISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHN 579

Query: 339 SMEENGCALDVDTFNTLM 356
            M EN    DV T NTLM
Sbjct: 580 KMVENSFKPDVVTCNTLM 597



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 163/400 (40%), Gaps = 71/400 (17%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N+L+  +   G I+ A+++V+ M   G  P++ T + L  GL + G ++   +L  EM
Sbjct: 276 TYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEM 335

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                +  G   P+V  Y +L D   K R       L  EM++KG+ A  +        L
Sbjct: 336 -----ERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGL 390

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG----- 192
           CK  +L  A   L  M   GL P + TY  L++ +C  G +  A  L D M R+G     
Sbjct: 391 CKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDT 450

Query: 193 ------------------------------FMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
                                         FMPD  SY  ++  Y K +N E A+ +  E
Sbjct: 451 FTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDE 510

Query: 223 MI--------------LNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           MI              + G  ++          NE+    +VP+  T NI I   CK G 
Sbjct: 511 MIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGD 570

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +    +    +  ++ +  V   N+L+ G C  G  + A +LF     K    DV+ YN 
Sbjct: 571 LENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNT 630

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           LI  + K+G +    +    ME  G   D  T+N ++ + 
Sbjct: 631 LIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSAL 670



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 139/310 (44%), Gaps = 25/310 (8%)

Query: 56  RPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIY-KPNVFCYGSLIDGLC-KD 113
           RP++   + +++ L R+ + +      Q  ++       +   PN + +  L+   C K 
Sbjct: 164 RPSLQAANAVLSALARSPSTS-----PQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKG 218

Query: 114 RLVDQTKDL-FME---MKDKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYT 166
            L D    L  M+   +    +  NTLL   C+K  L EA  LL  M + G+ P   TY 
Sbjct: 219 TLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYN 278

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            L++ Y  +G +  A  + ++M   GF PD+++Y+VL  G C+   V+EA  +  EM   
Sbjct: 279 TLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEM--- 335

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
                    +L  ++P+  T N   D   K     + + L   +     +  +   N +I
Sbjct: 336 --------ERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVI 387

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
           +G CK G  E A    NK++   L  DV+ YN LIHA  K G I K   L+  M   G  
Sbjct: 388 KGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLK 447

Query: 347 LDVDTFNTLM 356
           LD  T NT++
Sbjct: 448 LDTFTLNTVL 457



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 152/337 (45%), Gaps = 42/337 (12%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           S  +R + P ++V++ +++  +  E N   A +L  +M      P+++T +TLI GL R 
Sbjct: 475 SPPQRGFMP-DEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRM 533

Query: 73  GNMNLTL-KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM----- 126
           G +   + KL++ M  G+        P+   Y  +I   CK+  ++       +M     
Sbjct: 534 GRLKEAIDKLNELMEKGL-------VPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSF 586

Query: 127 KDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
           K   +  NTL   LC   KL +A +L E  +++G    + TY  L+   C  G V+ A+ 
Sbjct: 587 KPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALH 646

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
            F  M  +G  PD F+Y+V+++   +    EEA N+  ++  +G             + +
Sbjct: 647 FFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESG------------TLSQ 694

Query: 244 TFTCNIF----IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           +F+  +     +D   ++G   +  E   T+E    +   E +  L+ G C  G F+ A 
Sbjct: 695 SFSSPLLKPSSVDE-AESGKDAKTEE--ETVENPQ-DSASEAYTKLVNGLCTSGQFKEAK 750

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
            + +++  K +  D   Y  L+     EG +K++  L
Sbjct: 751 AILDEMMQKGMSVDSSTYITLM-----EGLVKRQKRL 782


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 170/384 (44%), Gaps = 43/384 (11%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL- 69
           F    RR     +  ++  LIKG C  G I DA ++  KM+   CRP V T   L+ GL 
Sbjct: 148 FVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLC 207

Query: 70  --RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--ME 125
             RR G     L    EMVN      G+  PNV  Y +LI GLC++   D    L   ME
Sbjct: 208 KVRRVGEAEALLG---EMVNK-----GVV-PNVVTYNALIGGLCQEGRFDDVTKLLEKME 258

Query: 126 MKDKGINANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
           ++    +  T       LCK  K+    ++L   + +G+   + TY  L+NGYC  G + 
Sbjct: 259 IQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMK 318

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---------- 229
            A+ +   M R    P V +++ +I+G+C    V +AM    +M   G            
Sbjct: 319 AALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLI 378

Query: 230 -------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
                        ++ + M+   V+P+  T  IFID LC  G + E   LF  L +   +
Sbjct: 379 SGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIK 438

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
               I+ SL+ G C+ G  + A  L  K++ +N + DV  YN LI  L K  ++ +   L
Sbjct: 439 AHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDL 498

Query: 337 LLSMEENGCALDVDTFNTLMISFL 360
           L  M++ G      TFN L+   L
Sbjct: 499 LDKMKKQGIEPTTCTFNILIKQML 522



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 167/392 (42%), Gaps = 51/392 (13%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           L +FG+ ++    P N  T+N+LI   C    + DA   + +M   G  P+  T + L+ 
Sbjct: 75  LASFGAMLKSGAPP-NRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLML 133

Query: 68  GLRRTGNMNLTLKLHQEM----------------VNGMGDFG--------------GIYK 97
           GL R G +     L  +M                + G+   G              G  +
Sbjct: 134 GLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCR 193

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P V  Y  L+DGLCK R V + + L  EM +KG+  N +        LC++ +  +  +L
Sbjct: 194 PGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKL 253

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           LE M  +  +P  +TYT +++G C  GKV     +      KG   +V +Y+ LINGYCK
Sbjct: 254 LEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCK 313

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
             +++ A++V               MK   V P   T N  I G C  G V + M     
Sbjct: 314 GGDMKAALDV------------LQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQ 361

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +  +        FNSLI G C  G  +IA  L + +    ++ D   Y I I AL  EGQ
Sbjct: 362 MAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQ 421

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +++ + L   +   G       + +L+  + Q
Sbjct: 422 LEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQ 453



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 161/372 (43%), Gaps = 41/372 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK-L 81
           N VT+N+LI G C EG   D ++L++KM      P+  T   ++ GL + G +    K L
Sbjct: 230 NVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVL 289

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           H+ +  G+          V  Y +LI+G CK   +    D+   MK   +N         
Sbjct: 290 HEAIGKGVA-------LEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEV 342

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C   K+ +A   L  M   GL+P   T+  L++G C VG+  +A+ L D M   G 
Sbjct: 343 IHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGV 402

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK----------------------- 230
           +PD  +Y++ I+  C    +EEA ++   + + G K                        
Sbjct: 403 LPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFG 462

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +  +M   N +P+  T N  IDGLCK   +   ++L   ++    E     FN LI+   
Sbjct: 463 LMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQML 522

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN--YLLLSMEENGCALD 348
                  A++++ ++       D   Y + I     EG  K+EN    ++ M E G   D
Sbjct: 523 WDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGVFPD 582

Query: 349 VDTFNTLMISFL 360
           V+T+N ++ +++
Sbjct: 583 VETYNAIIKAYV 594



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 158/390 (40%), Gaps = 77/390 (19%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN +I GFC  G +  A   + +MA  G  PN  T ++LI+G    G   + L+L    
Sbjct: 338 TFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRL---- 393

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
           ++ M ++G +  P+   Y   ID LC +  +++   LF  +  KGI A+ ++        
Sbjct: 394 LDLMEEYGVL--PDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGY 451

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+   +  A  L+E M      P + TY  L++G C V +++ AI L D M ++G  P  
Sbjct: 452 CQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTT 511

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            ++++LI     +    +A  +  +MI +G          C    +T+T  I  D     
Sbjct: 512 CTFNILIKQMLWDKKHADAAKMYEQMISSG----------CKPDKQTYTLKISTDWF--E 559

Query: 258 GHVLEVMELFPTLEISNCELF--VEIFNSLIRGCCKFGIFEIA----------------- 298
           G   E       +E+    +F  VE +N++I+     G+ E A                 
Sbjct: 560 GATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCT 619

Query: 299 --------------------------------SELFNKLSCKNLVADVVAYNILIHALGK 326
                                            ELF ++   +    +  Y  L+  L  
Sbjct: 620 TYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCN 679

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + ++++  +LLL M+ N   LD D  + L+
Sbjct: 680 QCRLEEVEWLLLKMQGNSILLDEDMSDYLL 709



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 135/319 (42%), Gaps = 20/319 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++V + SL+ G+C  G+I  A  L++KMA+  C P+V T +TLI GL +   ++  + L 
Sbjct: 440 HNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLL 499

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TLLCK- 139
            +M        GI +P    +  LI  +  D+       ++ +M   G   +  T   K 
Sbjct: 500 DKMKK-----QGI-EPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKI 553

Query: 140 -------KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                   TK    +  +  M + G+ P + TY  ++  Y   G    A      M    
Sbjct: 554 STDWFEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVP 613

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMN--VSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
             PD  +YS+L+N  C   + +   N  + + + +   +++F +M   +  P   T    
Sbjct: 614 IDPDCTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKAL 673

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC-CKFGIFEIASELFNKLSCKN 309
           + GLC    + EV  L   ++  N  L  E  +  + GC C   ++  A E F  ++ ++
Sbjct: 674 LRGLCNQCRLEEVEWLLLKMQ-GNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQS 732

Query: 310 LVADVVAYNILIHALGKEG 328
               + +  +L+  L   G
Sbjct: 733 FQPGLKSCCLLLSGLCDSG 751



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 125/325 (38%), Gaps = 85/325 (26%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT-----GLRRTGNMNLTL- 79
           TFN LIK    +    DA+++ ++M + GC+P+  T    I+     G  +  N+++ + 
Sbjct: 513 TFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVV 572

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----- 134
           ++H+          G++ P+V  Y ++I       L ++     ++M    I+ +     
Sbjct: 573 EMHE---------AGVF-PDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYS 622

Query: 135 ---TLLCKK-----------TKLVEANRLLEL---MMQRGLNPVIFTYTPLLNG------ 171
                +C K            K+V+   L EL   M +    P I TY  LL G      
Sbjct: 623 ILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCR 682

Query: 172 -----------------------------YCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                                        YC +     A   F SMA + F P + S  +
Sbjct: 683 LEEVEWLLLKMQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCL 742

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           L++G C + +   A+++  +M+  G+   ++E+             + ID L + GH   
Sbjct: 743 LLSGLCDSGDHGMAVSIFSDMLGLGYN--YDEV----------VWKLLIDCLHEKGHAGA 790

Query: 263 VMELFPTLEISNCELFVEIFNSLIR 287
            +E+   ++   C      + SL+R
Sbjct: 791 CLEMLSVMDAKKCVASTRTYASLVR 815


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 155/342 (45%), Gaps = 29/342 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N L+K  C  G + DA QL  +MA+    P+V T   LI G    G +   +KL  +M
Sbjct: 264 SYNILLKVLCGAGRVEDARQLFDEMAS---PPDVVTYGILIHGYCALGELENAVKLLDDM 320

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLC-KDRLVDQ---TKDLFME--MKDKGINANTL--L 137
           V       G+ +PN   Y S++  LC K R+ D     +D+     + D+ +    L   
Sbjct: 321 V-----ARGV-EPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGF 374

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C K  LV A R  + M ++GL     TYT L+NG C  G++  A  +   M  +    D 
Sbjct: 375 CNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDE 434

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+VL++GYCK   + EA  V   M+  G            V P   T     DGLCK 
Sbjct: 435 VTYTVLVDGYCKRGKMAEAFQVHNTMVQRG------------VAPNVVTYTALSDGLCKQ 482

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V    EL   +     EL    +NSLI G CK G  + A      +    L  DV  Y
Sbjct: 483 GDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTY 542

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             LI AL K G++ + + LL  M +NG    + T+N LM  F
Sbjct: 543 TTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGF 584



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 168/347 (48%), Gaps = 26/347 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+  LI G+C  G + +A +L+  M   G  PN T   +++  L   G ++  L 
Sbjct: 291 PPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALT 350

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           + ++MV+           +   Y +++ G C    +   +  F EM+ KG+  + +    
Sbjct: 351 VVEDMVHHKVIL------DEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTT 404

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC+  +L EA ++L+ M+ R L+    TYT L++GYC  GK+  A  + ++M ++G
Sbjct: 405 LINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRG 464

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+V +Y+ L +G CK  +V+ A  +  EM   G      E+  C       T N  I+
Sbjct: 465 VAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGL-----ELNAC-------TYNSLIN 512

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK G++ + M     ++ +  +  V  + +LI   CK G  + A +L  ++    +  
Sbjct: 513 GLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKP 572

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +V YN+L++     G+++    LL  M E     +  T+N+LM  +
Sbjct: 573 TIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQY 619



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 151/337 (44%), Gaps = 26/337 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +LI G C  G +++A +++++M       +  T   L+ G  + G M    ++H  
Sbjct: 400 VTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNT 459

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV       G+  PNV  Y +L DGLCK   V    +L  EM +KG+  N          
Sbjct: 460 MVQR-----GV-APNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLING 513

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   L +A R +  M   GL P ++TYT L++  C  G+++ A  L   M   G  P 
Sbjct: 514 LCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPT 573

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+VL+NG+C +  VE            G KK+   M   N+ P   T N  +   C 
Sbjct: 574 IVTYNVLMNGFCMSGRVE------------GGKKLLEWMLEKNIHPNATTYNSLMKQYCI 621

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             ++    E++  +   N E     +N LI+G CK    + A    N++  K       +
Sbjct: 622 GNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASS 681

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           Y+ LI  L K+ +  +   L   M + G   + D +N
Sbjct: 682 YSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYN 718



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 26/343 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L++  + +++ GFC +G++  A +   +M   G   +  T  TLI GL R G +    K+
Sbjct: 362 LDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKV 421

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            QEM+    D   +       Y  L+DG CK   + +   +   M  +G+  N +     
Sbjct: 422 LQEMLARRLDVDEV------TYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTAL 475

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+  +  AN LL  M  +GL     TY  L+NG C  G ++ A+     M   G 
Sbjct: 476 SDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGL 535

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PDV++Y+ LI+  CK+  ++ A ++ +EM+ NG K            P   T N+ ++G
Sbjct: 536 KPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIK------------PTIVTYNVLMNG 583

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C +G V    +L   +   N       +NSL++  C     +  +E++  +  +N+  +
Sbjct: 584 FCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPN 643

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              YNILI    K   +K+  Y    M E G  L   +++ L+
Sbjct: 644 ENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALI 686



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 136/308 (44%), Gaps = 26/308 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +++VT+  L+ G+C  G + +A Q+   M   G  PNV T   L  GL + G++    +L
Sbjct: 432 VDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANEL 491

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EM N   +       N   Y SLI+GLCK   +DQ      +M   G+  +       
Sbjct: 492 LHEMSNKGLEL------NACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTL 545

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  +L  A+ LL+ M+  G+ P I TY  L+NG+C+ G+V     L + M  K  
Sbjct: 546 IDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNI 605

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+  +Y+ L+  YC   N++               +I+  M   NV P   T NI I G
Sbjct: 606 HPNATTYNSLMKQYCIGNNMKSTT------------EIYKGMCSRNVEPNENTYNILIKG 653

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK   + E       +      L    +++LIR   K   F  A +LF+ +  +   A+
Sbjct: 654 HCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAE 713

Query: 314 VVAYNILI 321
              YN  I
Sbjct: 714 PDVYNFYI 721



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 23/248 (9%)

Query: 119 TKDLFMEMKDKGINANTLLC----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           +  L   ++  GI+ +   C     +  L EA  L + +  +     + +Y  LL   C 
Sbjct: 219 SAPLLRRVRQYGISPSPEACNAVLSRLPLDEAIELFQGLPDKN----VCSYNILLKVLCG 274

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G+V  A  LFD MA     PDV +Y +LI+GYC    +E A+ +  +M+  G       
Sbjct: 275 AGRVEDARQLFDEMASP---PDVVTYGILIHGYCALGELENAVKLLDDMVARG------- 324

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                V P        +  LC  G V + + +   +      L   ++ +++ G C  G 
Sbjct: 325 -----VEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGD 379

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A   F+++  K L  D V Y  LI+ L + G++K+   +L  M      +D  T+  
Sbjct: 380 LVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTV 439

Query: 355 LMISFLQK 362
           L+  + ++
Sbjct: 440 LVDGYCKR 447



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 90/229 (39%), Gaps = 51/229 (22%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T+NSLI G C  G +  A + +  M   G +P+V T  TLI  L ++G ++    L
Sbjct: 502 LNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDL 561

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
            QEM++      GI KP +  Y  L++G C    V+  K L   M +K I+ N       
Sbjct: 562 LQEMLDN-----GI-KPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSL 615

Query: 138 ---------------------------------------CKKTKLVEANRLLELMMQRGL 158
                                                  CK   + EA      M+++G 
Sbjct: 616 MKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGF 675

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM--PDVFSYSVLIN 205
                +Y+ L+       K   A  LF  M ++GF   PDV+++ +  N
Sbjct: 676 RLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFN 724


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 172/347 (49%), Gaps = 39/347 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + +T+N++I G+C EG +  A Q   KM     +P++ TC+ L+ GL   G ++  LKL 
Sbjct: 263 HQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLF 322

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
              ++       +       Y ++I GLCK+   ++  DL  EM++K +       N +L
Sbjct: 323 NTWISKGKAIDAV------TYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAIL 376

Query: 138 CK----KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           C     + ++ +A +    M+++   P +FT   LL G C  G ++ A+ LF++   KG 
Sbjct: 377 CALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGK 436

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM---------------ILNGF------KKIF 232
             D  +Y+ +I+G CK    EEA ++  EM               I+ G+      +K F
Sbjct: 437 AIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAF 496

Query: 233 ---NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
              N+M   +  P+ FTCNI + GLC+ G +++ ++LF T       +    +N++I G 
Sbjct: 497 QFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGL 556

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
           CK G FE A +L  ++  K L  D   YN ++ AL   G+++ E ++
Sbjct: 557 CKEGRFEEAFDLLAEMKEKKLGPDCYTYNAILCALADAGRMEAEEFM 603



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 172/364 (47%), Gaps = 32/364 (8%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           + G+++  C RP +     + +K   ++ N+   + L+  +  +  +P+V     + T +
Sbjct: 141 SIGAYVS-CNRPHHAAQIFNRMKRLHLKPNLLTRNTLINALVRYPSKPSVCLSKAIFTNV 199

Query: 70  RRTGNMNLTLKLHQE--MVNGMGDFGGIYKPNVFCYGSLID--GLCKDRLVDQTKDLFME 125
            + G  N   KL +   ++  M DF     P+   Y +++D   LC+    DQ+ D   E
Sbjct: 200 IKFGVKN---KLSEAIGLIGKMKDFSCF--PDNASYNTILDVLWLCRSGKTDQSIDKLNE 254

Query: 126 MKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           + + G     I  NT++   C++ ++ +A +    M+++   P +FT   LL G C  G 
Sbjct: 255 LLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGM 314

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           ++ A+ LF++   KG   D  +Y+ +I+G CK    EEA ++  EM          E KL
Sbjct: 315 LDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEM---------EEKKL 365

Query: 238 CNVVPETFTCNIFIDGLC-KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
               P+ +T N  +  L    G V +  +    +   + +  +   N L+RG C  G+ +
Sbjct: 366 G---PDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLD 422

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE-NGCALDVDTFNTL 355
            A +LFN    K    D V YN +I  L KEG+ ++   LL  MEE NG   D  T+NT+
Sbjct: 423 NALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTI 482

Query: 356 MISF 359
           ++ +
Sbjct: 483 ILGY 486



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 16/183 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF-GCRPNVTTCDTL 65
           AL  F ++I +  + ++ VT+N++I G C EG   +A  L+ +M    G  P+ TT +T+
Sbjct: 424 ALKLFNTWISKG-KAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTI 482

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I G  R G +    +   +MV         +KP++F    L+ GLC++ ++ +   LF  
Sbjct: 483 ILGYCREGQVEKAFQFRNKMVEKS------FKPDLFTCNILLRGLCREGMLVKALKLFNT 536

Query: 126 MKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
              KG     +  NT+   LCK+ +  EA  LL  M ++ L P  +TY  +L      G+
Sbjct: 537 WISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTYNAILCALADAGR 596

Query: 178 VNV 180
           +  
Sbjct: 597 MEA 599


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 170/348 (48%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V++ +LI G C  G + +   + KKM    C P V T   ++  L  +G     + L 
Sbjct: 38  NEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLF 97

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLL 137
            EM     +      PN+  Y  +I+ +CK+  +++ + +  EM +KG+       N L+
Sbjct: 98  SEMRERGCE------PNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALI 151

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+  +  A  +L+LM     NP   TY  L+ G+C    V+ A+AL   M      
Sbjct: 152 DGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLT 211

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P V +Y+ LI+G CK   ++ A             ++ N M    VVP+ +T ++FID L
Sbjct: 212 PSVVTYNSLIHGQCKIGYLDSAY------------RLLNLMNENGVVPDQWTYSVFIDTL 259

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G + E   LF +L+    +    I+ +LI G CK G  + A+ L +++  ++ + + 
Sbjct: 260 CKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNS 319

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             YN LI  L KE ++++   L+ SM + G    V T+  L+++ L++
Sbjct: 320 STYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKE 367



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 171/437 (39%), Gaps = 105/437 (24%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ T+N LI GFC + N+  A  L+ KM      P+V T ++LI G  + G ++   +L 
Sbjct: 178 NERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRL- 236

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
              +N M + G +  P+ + Y   ID LCK   +++   LF  +K+KGI AN +      
Sbjct: 237 ---LNLMNENGVV--PDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALI 291

Query: 137 -------------------------------------LCKKTKLVEANRLLELMMQRGLN 159
                                                LCK+ K+ EA  L+E M+Q+GL 
Sbjct: 292 DGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLK 351

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE---- 215
             + TYT L+      G  + A  + D M   G+ PDV+ Y+  I+ +C   N++E    
Sbjct: 352 CTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDM 411

Query: 216 -------------------------------AMNVSREMILNG----------------- 227
                                          A +V + M   G                 
Sbjct: 412 MSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLK 471

Query: 228 --FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
               K +  + LC+ +P  F  ++    + K       +ELF  +    C   +  +  L
Sbjct: 472 EELTKKYKNVALCDSIPNVFFADVA--DVWKMMKFETALELFEKMLEHGCSPNINTYAKL 529

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G CK G   +A +LF+ ++ + +      YN L++   + G       L+ +M E+G 
Sbjct: 530 IIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGH 589

Query: 346 ALDVDTFNTLMISFLQK 362
              +++ N L     ++
Sbjct: 590 LPLLESLNVLFCGLYEE 606



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 101/429 (23%), Positives = 157/429 (36%), Gaps = 101/429 (23%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T++  I   C +G I +A+ L   +   G + N      LI G  + G M+    L 
Sbjct: 248 DQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLL 307

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------- 135
             M+           PN   Y +LIDGLCK+R V +   L   M  KG+           
Sbjct: 308 DRMLTE------DCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILI 361

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             + K+     A+R+L+ M+  G  P ++ YT  ++ +C  G +  A  +   M  +G M
Sbjct: 362 VAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVM 421

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-------------------FKKIFNEM 235
           PD  +Y+++I+ Y     +  A +V + M   G                     K +  +
Sbjct: 422 PDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNV 481

Query: 236 KLCNVVPETFTCNI---------------------------------FIDGLCKNGHVLE 262
            LC+ +P  F  ++                                  I GLCK G +  
Sbjct: 482 ALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGV 541

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL---------------FNKLSC 307
             +LF  +          I+NSL+  CC+ GI+  A  L                N L C
Sbjct: 542 AQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFC 601

Query: 308 ---------------KNLVA-----DVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
                           NL+      D VA+ ILI  L K G     + LL  ME  GC +
Sbjct: 602 GLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQI 661

Query: 348 DVDTFNTLM 356
              T+  L+
Sbjct: 662 HPQTYRMLI 670



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 124/304 (40%), Gaps = 50/304 (16%)

Query: 19  YRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           Y+P  DV  + + I  FC  GNI++A  ++  M   G  P+  T   +I      G +N 
Sbjct: 385 YQP--DVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNP 442

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL----------FMEMK 127
              + + M +   D      P+   Y  LI  L K+ L  + K++          F ++ 
Sbjct: 443 AFDVLKRMFDTGCD------PSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVA 496

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           D        + K  K   A  L E M++ G +P I TY  L+ G C VG++ VA  LFD 
Sbjct: 497 D--------VWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDH 548

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------------------- 228
           M  +G  P    Y+ L+N  C+     +A+ +   M+ +G                    
Sbjct: 549 MNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGS 608

Query: 229 ----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
               K +F+ +  C    +     I IDGL KNG      EL   +E   C++  + +  
Sbjct: 609 KEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRM 668

Query: 285 LIRG 288
           LI G
Sbjct: 669 LIEG 672



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 21/205 (10%)

Query: 168 LLNGYCLVG---------KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           ++NGYC +G          VN A ++F+ M +KG   +  SY+ LI+G C+   V+E +N
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                       IF +M+  +  P   T  + +  L ++G  +E + LF  +    CE  
Sbjct: 61  ------------IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPN 108

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +  +I   CK    E    + +++  K LV  V  YN LI    KEG ++    +L 
Sbjct: 109 IHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILD 168

Query: 339 SMEENGCALDVDTFNTLMISFLQKE 363
            M  N C  +  T+N L+  F +K+
Sbjct: 169 LMHSNSCNPNERTYNELICGFCRKK 193


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 163/339 (48%), Gaps = 26/339 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N+++KG CM     D  +L+ +M    C PN+ T +TLI  L R G   L  ++H E
Sbjct: 217 VSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG---LFERVH-E 272

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++  M + G    P++  Y ++IDG+CK+  ++   ++   M   G+  N +        
Sbjct: 273 VLAQMSEHG--CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKG 330

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +  EA  LL  M Q+       T+  L++ +C  G V+  I L + M   G MPD
Sbjct: 331 LCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPD 390

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ +ING+CK   ++EA+             +   M  C   P T +  I + GLC 
Sbjct: 391 VITYTTVINGFCKEGLIDEAV------------MLLKSMSSCGCKPNTVSYTIVLKGLCS 438

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G  ++  EL   +    C      FN+LI   CK G+ E A EL  ++       D+++
Sbjct: 439 AGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 498

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           Y+ +I  LGK G+ ++   LL  M   G + +   ++++
Sbjct: 499 YSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 172/348 (49%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFN+LI   C  G      +++ +M+  GC P++    T+I G+ + G+    L++ 
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGH----LEVA 305

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANT----- 135
            E++N M  +G   KPNV CY +++ GLC      + ++L  EM  KD  ++  T     
Sbjct: 306 NEILNRMPSYG--LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILV 363

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+   +     LLE M+  G  P + TYT ++NG+C  G ++ A+ L  SM+  G  
Sbjct: 364 DFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCK 423

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  SY++++ G C      +A  +  +MI  G          C   P TF  N  I+ L
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG----------CPPNPVTF--NTLINFL 471

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G V + +EL   + ++ C   +  ++++I G  K G  E A EL N +  K +  + 
Sbjct: 472 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + Y+ +  AL +EG++ K   +  ++++     D   +N ++ S  ++
Sbjct: 532 IIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKR 579



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 165/340 (48%), Gaps = 32/340 (9%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL---RRTGNMNLTLKLHQE 84
           N ++   C +G + +A  L++K+A FGC  ++ + + ++ GL   +R G++    +L  E
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE---ELMDE 241

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           MV           PN+  + +LI  LC++ L ++  ++  +M + G   +  +       
Sbjct: 242 MVRV------DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG 295

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+  L  AN +L  M   GL P +  Y  +L G C   +   A  L   M +K    D
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLD 355

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             ++++L++ +C+N  V+  + +  +M+ +G             +P+  T    I+G CK
Sbjct: 356 DVTFNILVDFFCQNGLVDRVIELLEQMLSHG------------CMPDVITYTTVINGFCK 403

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E + L  ++    C+     +  +++G C  G +  A EL +++  +    + V 
Sbjct: 404 EGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVT 463

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +N LI+ L K+G +++   LL  M  NGC+ D+ +++T++
Sbjct: 464 FNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 162/380 (42%), Gaps = 50/380 (13%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N  TF  +++G C  G I DA +++ +M+  GC P       ++    R+G    +++
Sbjct: 108 PPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVR 167

Query: 81  LHQEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLC 111
           + + M               +N + + G +               + ++  Y +++ GLC
Sbjct: 168 VLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLC 227

Query: 112 KDRLVDQTKDLFMEM-----KDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIF 163
             +     ++L  EM         +  NTL   LC+       + +L  M + G  P I 
Sbjct: 228 MAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIR 287

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
            Y  +++G C  G + VA  + + M   G  P+V  Y+ ++ G C     +EA  +  EM
Sbjct: 288 MYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEM 347

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                       K C +   TF  NI +D  C+NG V  V+EL   +    C   V  + 
Sbjct: 348 F----------QKDCPLDDVTF--NILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYT 395

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           ++I G CK G+ + A  L   +S      + V+Y I++  L   G+      L+  M + 
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 344 GCALDVDTFNTLMISFLQKE 363
           GC  +  TFNTL I+FL K+
Sbjct: 456 GCPPNPVTFNTL-INFLCKK 474



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 158/351 (45%), Gaps = 28/351 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL+DVTFN L+  FC  G +    +L+++M + GC P+V T  T+I G  + G ++  + 
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL--- 136
           L    +  M   G   KPN   Y  ++ GLC   R VD  ++L  +M  +G   N +   
Sbjct: 413 L----LKSMSSCG--CKPNTVSYTIVLKGLCSAGRWVD-AEELMSQMIQQGCPPNPVTFN 465

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCKK  + +A  LL+ M+  G +P + +Y+ +++G    GK   A+ L + M  K
Sbjct: 466 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNK 525

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+   YS +            A  +SRE  +N   ++F+ +K   +  +    N  I
Sbjct: 526 GISPNTIIYSSI------------ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVI 573

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK       ++ F  +  + C      +  LI+G    G+ + A EL ++L  +  +
Sbjct: 574 SSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              +  +  I    +E   +K    L S  +N   L ++    L I  L+ 
Sbjct: 634 RKHLMRHFGISNCTQENGKQKCEENLTSAVDNNYKLPIEILGFLEIQNLRP 684


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 179/387 (46%), Gaps = 45/387 (11%)

Query: 5   LGALMAFGSF--IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           L +  AF  F  I R   PL   TFN +++  C  G    A +L+++M     RPN  T 
Sbjct: 95  LPSAPAFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMP----RPNAVTY 150

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKD 121
           +T+I G    G +   L++ +EM     + GGI  P+ + Y +LI G CK  R+ D  K 
Sbjct: 151 NTVIAGFCARGRVQAALEVMREM----RERGGI-APDKYTYATLISGWCKIGRMEDAVK- 204

Query: 122 LFMEMKDKGINANTLL---------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +F EM  KG  A + +         C   KL  A +  E M+QRG+   + TY  L++  
Sbjct: 205 VFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHAL 264

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--- 229
            +  + + A A+ + M + GF PDVF+Y++LINGYCK  N ++A+ V  EM   G +   
Sbjct: 265 FMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATA 324

Query: 230 --------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                               ++FN      + P+    N  I+  C  G +    E+   
Sbjct: 325 VTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAE 384

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +E          +N+L+RG C  G  + A  L ++++ + +  D+V+YN LI     +G 
Sbjct: 385 MEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGD 444

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           IK    +   M + G    + T+N L+
Sbjct: 445 IKDALRVRDEMMDKGFNPTLMTYNALI 471



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 50/342 (14%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           T+ +LI G+C  G + DA ++  +M T G   P+    + LI G    G +++ L+  ++
Sbjct: 185 TYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYRED 244

Query: 85  MVN-GMGDFGGIY----------------------------KPNVFCYGSLIDGLCKDRL 115
           MV  G+      Y                             P+VF Y  LI+G CK+  
Sbjct: 245 MVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGN 304

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
             +  ++F EM  KG+ A  +          +K ++ E +RL  + +++G+ P +  Y  
Sbjct: 305 EKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNA 364

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L+N +C  G +  A  +   M +K   PD  +Y+ L+ G+C    ++EA           
Sbjct: 365 LINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEA----------- 413

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
            + + +EM    + P+  + N  I G    G + + + +   +        +  +N+LI+
Sbjct: 414 -RTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQ 472

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           G CK    + A  L  ++  K +  D   Y  LI  L  E +
Sbjct: 473 GLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTEDE 514



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N+LI G+ M+G+I+DA ++  +M   G  P + T + LI GL +    +    L +E
Sbjct: 430 VSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKE 489

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
           MV       GI  P+   Y SLI+GL  +
Sbjct: 490 MVA-----KGI-TPDDSTYISLIEGLTTE 512


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 113/371 (30%), Positives = 170/371 (45%), Gaps = 40/371 (10%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMAT--FGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            VT+N+L+  F  EG     + L+K+M T   GC PN  T + +ITGL R G+    L+  
Sbjct: 1120 VTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGD----LEEA 1175

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------NANT 135
             E+V GM       K + F Y  LI GL     V +  DL +EM+++GI       NA  
Sbjct: 1176 AELVEGMRLSK---KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMI 1232

Query: 136  LLCKKTKLVEANRL-LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
                ++ LVEA ++    M   GL P + TY  LLNGYC  G +  A+ LF  + R G  
Sbjct: 1233 HGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLA 1292

Query: 195  PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKKI 231
            P V +Y++LI+GYC+  ++EEA  +  EM   G                        ++ 
Sbjct: 1293 PTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREF 1352

Query: 232  FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            F+EM    + P+ F  N  I      G +    EL   L +         +N LI G CK
Sbjct: 1353 FDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCK 1412

Query: 292  FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
             G  + A EL  K+    L  D + Y  LIHA  + G +++   +  +M  +G      T
Sbjct: 1413 TGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVT 1472

Query: 352  FNTLMISFLQK 362
            F  ++ ++ ++
Sbjct: 1473 FTVIIHAYCRR 1483



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 104/365 (28%), Positives = 169/365 (46%), Gaps = 38/365 (10%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            NDVT+N +I G   +G++ +A++LV+ M     + +  T + LITGL   G +     L 
Sbjct: 1155 NDVTYNVVITGLTRKGDLEEAAELVEGM-RLSKKASSFTYNPLITGLLARGCVKKVYDLQ 1213

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
             EM N      GI  P V  Y ++I GL +  LV+  +  F EM+  G     I  N+LL
Sbjct: 1214 LEMEN-----EGIM-PTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLL 1267

Query: 138  ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               CK   L EA  L   + + GL P + TY  L++GYC +G +  A  L + M  +G +
Sbjct: 1268 NGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCL 1327

Query: 195  PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--------KIFNEMKLCNVV----- 241
            P+V +Y++L+ G     ++  A     EM+  G +        +I  E+ L ++      
Sbjct: 1328 PNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFEL 1387

Query: 242  ----------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                       +T T NI I GLCK G++ +  EL   +  +  +     +  LI   C+
Sbjct: 1388 REVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCE 1447

Query: 292  FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
             G+   A ++FN +    L+   V + ++IHA  + G +         M E G   +  T
Sbjct: 1448 RGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEIT 1507

Query: 352  FNTLM 356
            +N L+
Sbjct: 1508 YNVLI 1512



 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 98/343 (28%), Positives = 153/343 (44%), Gaps = 26/343 (7%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            +T+NSL+ G+C  GN+++A  L   +   G  P V T + LI G  R G++     L +E
Sbjct: 1261 ITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEE 1320

Query: 85   MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCK 139
            M    G+ G +  PNV  Y  L+ G    R +   ++ F EM  KG+       NT +C 
Sbjct: 1321 M----GEQGCL--PNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICA 1374

Query: 140  KTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            +  L +  R  EL   +M  G++    TY  L++G C  G +  A  L   M   G  PD
Sbjct: 1375 ELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPD 1434

Query: 197  VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
              +Y+ LI+ +C+   + EA            +KIFN M    ++P   T  + I   C+
Sbjct: 1435 CITYTCLIHAHCERGLLREA------------RKIFNNMISDGLLPSAVTFTVIIHAYCR 1482

Query: 257  NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             G++      F  +     E     +N LI   C+ G  ++AS  F+++  + LVA+   
Sbjct: 1483 RGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYT 1542

Query: 317  YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            Y +LI    K G  +        M +NG   D  T   L+  F
Sbjct: 1543 YTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKGF 1585


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 174/361 (48%), Gaps = 37/361 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI G C  G++  A  L  KM   G  PN  T   L+ G  + G      +++
Sbjct: 192 NVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMY 251

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M     +  GI  PN + Y  LI   C D +VD+   +F EM++KGI    +      
Sbjct: 252 ENM-----NRSGIV-PNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILI 305

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  K  EA +L+  + + GL+P I TY  L+NG+C VGK++ A+ LF+ +   G  
Sbjct: 306 GGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLS 365

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIFNEMKLCN- 239
           P + +Y+ LI GY K  N+  A+++ +EM              +++ F ++    K C  
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEM 425

Query: 240 --------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                   +VP+ +T ++ I G C NG++ E  + F +L   + +    I+N++I G CK
Sbjct: 426 HSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCK 485

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A  L N++    +V +V ++   +  L ++ + K+   LL  M  +G    V  
Sbjct: 486 EGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVSL 545

Query: 352 F 352
           +
Sbjct: 546 Y 546



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 147/353 (41%), Gaps = 47/353 (13%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL      I   + PL++ TFN+L+    +  N  D +  +  +       N  +   +I
Sbjct: 108 ALTFLHHMIHEGHAPLSN-TFNNLL-CLLIRSNYFDKAWWIFNVLKSKVVLNAYSFGIMI 165

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           TG    G      +L    +  + +FG    PNV  Y +LIDG CK+  V   K+LF   
Sbjct: 166 TGCCEAGYFVRVFRL----LAVLEEFG--LSPNVVIYTTLIDGCCKNGDVMLAKNLF--- 216

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                      CK  +L             GL P   TY+ L+NG+   G       +++
Sbjct: 217 -----------CKMDRL-------------GLVPNQHTYSVLMNGFFKQGLQREGFQMYE 252

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
           +M R G +P+ ++Y+ LI+ YC +  V++A             K+F EM+   +     T
Sbjct: 253 NMNRSGIVPNAYAYNCLISEYCNDGMVDKAF------------KVFAEMREKGIACGVMT 300

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            NI I GLC+     E ++L   +        +  +N LI G C  G  + A  LFN+L 
Sbjct: 301 YNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLK 360

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              L   +V YN LI    K   +     L+  MEE   A    T+  L+ +F
Sbjct: 361 SSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAF 413



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 148/337 (43%), Gaps = 28/337 (8%)

Query: 36  MEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLK-LHQEMVNGMGDFG 93
           + G I  +  L    A F  C       D ++     + + +  L  LH  +  G     
Sbjct: 65  ISGRIPSSLMLQLTQAHFTSCSTYTPLYDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLS 124

Query: 94  GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-NANTL------LCKKTKLVEA 146
             +  N+ C       L +    D+   +F  +K K + NA +        C+    V  
Sbjct: 125 NTFN-NLLCL------LIRSNYFDKAWWIFNVLKSKVVLNAYSFGIMITGCCEAGYFVRV 177

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
            RLL ++ + GL+P +  YT L++G C  G V +A  LF  M R G +P+  +YSVL+NG
Sbjct: 178 FRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNG 237

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           + K         + RE    GF+ ++  M    +VP  +  N  I   C +G V +  ++
Sbjct: 238 FFKQ-------GLQRE----GFQ-MYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKV 285

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
           F  +        V  +N LI G C+   F  A +L +K++   L  ++V YNILI+    
Sbjct: 286 FAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCD 345

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            G++     L   ++ +G +  + T+NTL+  + + E
Sbjct: 346 VGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVE 382



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 134/306 (43%), Gaps = 26/306 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   +N LI  +C +G +  A ++  +M   G    V T + LI GL R       +KL 
Sbjct: 262 NAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLV 321

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
            + VN +G       PN+  Y  LI+G C    +D    LF ++K  G++      NTL+
Sbjct: 322 HK-VNKVG-----LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLI 375

Query: 138 CKKTK---LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              +K   L  A  L++ M +R +     TYT L++ +  +   + A  +   M + G +
Sbjct: 376 AGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLV 435

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV++YSVLI+G C N N++EA             K F  +   ++ P +   N  I G 
Sbjct: 436 PDVYTYSVLIHGXCVNGNMKEA------------SKPFKSLGEMHLQPNSVIYNTMIHGY 483

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G     + L   +  S     V  F S +   C+   ++ A  L  ++    L   V
Sbjct: 484 CKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSV 543

Query: 315 VAYNIL 320
             Y ++
Sbjct: 544 SLYKMV 549



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 14/227 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N LI GFC  G +  A +L  ++ + G  P + T +TLI G  +  N+   L L 
Sbjct: 332 NIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLV 391

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM     +   I +  V  Y  LID   +    D+  ++   M+  G+  +        
Sbjct: 392 KEM-----EERCIARSKV-TYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLI 445

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C    + EA++  + + +  L P    Y  +++GYC  G    A+ L + M   G +
Sbjct: 446 HGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMV 505

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           P+V S+   +   C++   +EA  +  +MI +G K   +  K+ + V
Sbjct: 506 PNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMVHKV 552



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 8/123 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI G C+ GN+++AS+  K +     +PN    +T+I G  + G+    L+L  EM
Sbjct: 440 TYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEM 499

Query: 86  VN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           V+ GM        PNV  + S +  LC+D    + + L  +M + G+  +  L K    V
Sbjct: 500 VHSGM-------VPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMVHKV 552

Query: 145 EAN 147
           + +
Sbjct: 553 KGD 555


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 164/365 (44%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +N LI G+C  G++     L+ +M   G  P V T  TL++ L R G++     L 
Sbjct: 293 NAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLL 352

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM            PNV  Y S+ID LCK R   Q   +  +M   G + + +      
Sbjct: 353 SEMRERR------LPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLI 406

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ ++ EA RLL    +  LNP + +YT L++G+C+ G+V VA  L   M  +G  
Sbjct: 407 SGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHT 466

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM-----------------------ILNGFKKI 231
           PDV ++  LI+G      V EA+ V  +M                       +L   + +
Sbjct: 467 PDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNL 526

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
             EM   NV P+ +     IDG  +N  + E  ++F  +E       V  +N++I+G C+
Sbjct: 527 IEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQ 586

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           FG+   A E  + +     + D   Y  LI    K+G I     LL  M +  C  +V  
Sbjct: 587 FGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVA 646

Query: 352 FNTLM 356
           +++L+
Sbjct: 647 YSSLI 651



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 168/390 (43%), Gaps = 67/390 (17%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ---LVKKMATFGCRPNVTTCDTLITGL 69
           S +R    P N   +NS+I   C     R ASQ   ++K+M   GC P+  T  TLI+GL
Sbjct: 353 SEMRERRLPPNVQIYNSVIDALC---KCRSASQALVVLKQMFAGGCDPDAITFSTLISGL 409

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
            + G +    +L +E             PN+  Y SLI G C    V    +L +EM ++
Sbjct: 410 CQEGRVQEAERLLRETTRWE------LNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMER 463

Query: 130 GINANTL-------------------------------------------LCKKTKLVEA 146
           G   + +                                           LCKK  L  A
Sbjct: 464 GHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAA 523

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             L+E M+++ ++P  + YT L++G+     ++ A  +F+ M +KG  PDV  Y+ +I G
Sbjct: 524 RNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKG 583

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           YC+   + EA+            +  + M+    +P+ FT    I G  K G++   + L
Sbjct: 584 YCQFGMMNEAV------------ECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSL 631

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +    C+  V  ++SLI G CK G  + A  LF  +  + L  +V+ Y ILI +L K
Sbjct: 632 LCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFK 691

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + ++ +       M  N C+ +  T ++L+
Sbjct: 692 KDKVVRAAMYFEYMLLNQCSPNDYTLHSLV 721



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 170/389 (43%), Gaps = 64/389 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  ++ SLI GFC+ G +  AS L+ +M   G  P+V T   LI GL   G ++  L + 
Sbjct: 433 NLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVR 492

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL 137
           ++M            P+   Y  LI GLCK +++   ++L  EM ++ ++ +     TL+
Sbjct: 493 EKMAARQ------LLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLI 546

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               +   L EA ++ E M Q+G++P +  Y  ++ GYC  G +N A+    +M + G +
Sbjct: 547 DGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRI 606

Query: 195 PDVFSYSVLINGYCKNFNVEEAMN--------------VSREMILNGFKK---------I 231
           PD F+Y+ LI GY K  N+  A++              V+   ++NG+ K         +
Sbjct: 607 PDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECL 666

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC- 290
           F  M+   + P   T  I I  L K   V+     F  + ++ C       +SL+ G C 
Sbjct: 667 FGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCN 726

Query: 291 ------------------KFGIFEIASELFN-KLSCKNLVADVVAYNILIH-ALGKEGQI 330
                             K  + +I   L N +   +N   + + +++ IH  LG+   +
Sbjct: 727 SMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDL 786

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISF 359
           K +      M   G   D  TF +L+  F
Sbjct: 787 KNK------MANKGYKPDSATFLSLLYGF 809



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 143/349 (40%), Gaps = 61/349 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +D +   +++G C+EG +    +L++     GC PN    + LI G  R G++   + L 
Sbjct: 258 DDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLL 317

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------- 135
            EM     +  G+  P V  YG+L+  L +   +++   L  EM+++ +  N        
Sbjct: 318 GEM-----EAKGLL-PTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVI 371

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK     +A  +L+ M   G +P   T++ L++G C  G+V  A  L     R    
Sbjct: 372 DALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELN 431

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P++ SY+ LI+G+C    V  A N+  EM+  G              P+  T    I GL
Sbjct: 432 PNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGH------------TPDVVTFGALIHGL 479

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
              G V E +                    L+R                K++ + L+ D 
Sbjct: 480 VVAGQVSEAL--------------------LVR---------------EKMAARQLLPDA 504

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             YN+LI  L K+  +     L+  M E     D   + TL+  F++ E
Sbjct: 505 NIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNE 553



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%)

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           +K+++EM       + ++  + + GLC  G V + ++L      + C      +N LI G
Sbjct: 244 RKLYDEMLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDG 303

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C+ G       L  ++  K L+  VV Y  L+  LG++G ++K   LL  M E     +
Sbjct: 304 YCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPN 363

Query: 349 VDTFNTLM 356
           V  +N+++
Sbjct: 364 VQIYNSVI 371



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 122/308 (39%), Gaps = 69/308 (22%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           S +R+  R  ++ T+ +LI G+  +GNI  A  L+  M    C+PNV    +LI G  + 
Sbjct: 598 STMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKL 657

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
           G+ +       E + G  +  G++ PNV  Y  LI                         
Sbjct: 658 GDTDAA-----ECLFGSMESQGLF-PNVITYTILIGS----------------------- 688

Query: 133 ANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC--LVGKVNVAIALFDSMAR 190
               L KK K+V A    E M+    +P  +T   L+ G C  +   ++   +   ++  
Sbjct: 689 ----LFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHG 744

Query: 191 KGFMPDVF-------------SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           KG + D+F             +Y+ +I   C +  + EA+++  +M   G+K        
Sbjct: 745 KGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLKNKMANKGYK-------- 796

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE-----IFNSLI---RGC 289
               P++ T    + G C  G   E   + P  E    EL V      +F+  +    GC
Sbjct: 797 ----PDSATFLSLLYGFCSVGKSREWRTILPN-EFQRDELEVASRYKILFDQYVVKSVGC 851

Query: 290 CKFGIFEI 297
             + +F++
Sbjct: 852 EVYSVFQL 859



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 12/182 (6%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A  L+D M  +    D +S  V++ G C    VE+ +            K+         
Sbjct: 243 ARKLYDEMLAEESGADDYSTCVMVRGLCLEGLVEKGL------------KLIEARWGAGC 290

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           VP     N+ IDG C+ G V   + L   +E       V  + +L+    + G  E  + 
Sbjct: 291 VPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIAS 350

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           L +++  + L  +V  YN +I AL K     +   +L  M   GC  D  TF+TL+    
Sbjct: 351 LLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLC 410

Query: 361 QK 362
           Q+
Sbjct: 411 QE 412


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 176/403 (43%), Gaps = 72/403 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLI G+   G++ + + L  +M   GC P++ T + LI    +   M    +   E
Sbjct: 325 VTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSE 384

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M N      G+ KPNV  Y +LID  CK+ ++     LF++M+  G+  N          
Sbjct: 385 MKNN-----GL-KPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDA 438

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   L EA +LL  M+Q G+   I TYT LL+G C  G++  A  +F SM + G  P+
Sbjct: 439 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 498

Query: 197 VFSYSVLINGYCKNFNVEEAM---------NVSREMILNG-------------------- 227
              Y+ L++GY K   +E+AM         N+  ++IL G                    
Sbjct: 499 QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILE 558

Query: 228 ---------------------FKK--------IFNEMKLCNVVPETFTCNIFIDGLCKNG 258
                                FK          F EM+   V     T  + IDGLCK G
Sbjct: 559 EMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAG 618

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            V   ++ F  +     +  V ++ SLI G CK    E A +LF+++ C+ +  D+ A+ 
Sbjct: 619 IVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFT 678

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            LI    K G +++   L+  M E     D+  + +L+  F Q
Sbjct: 679 ALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQ 721



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 166/391 (42%), Gaps = 60/391 (15%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N +I   C EG++ ++ +L  +M   G  P+V T ++LI G  + G++     L  EM
Sbjct: 291 TYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM 350

Query: 86  -----VNGMGDFGGI------------------------YKPNVFCYGSLIDGLCKDRLV 116
                V  +  + G+                         KPNV  Y +LID  CK+ ++
Sbjct: 351 KDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMM 410

Query: 117 DQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
                LF++M+  G+  N           CK   L EA +LL  M+Q G+   I TYT L
Sbjct: 411 QGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTAL 470

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM---------NV 219
           L+G C  G++  A  +F SM + G  P+   Y+ L++GY K   +E+AM         N+
Sbjct: 471 LDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNI 530

Query: 220 SREMILNG--------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
             ++IL G               K I  EMK   +          ID   K G   + + 
Sbjct: 531 KPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALN 590

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
            F  ++    E  +  +  LI G CK GI E+A + F ++    L  +V  Y  LI  L 
Sbjct: 591 FFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLC 650

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K   I+    L   M+  G   D+  F  L+
Sbjct: 651 KNNCIESAKKLFDEMQCRGMTPDITAFTALI 681



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 155/331 (46%), Gaps = 26/331 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN VT+ +L+ G C  G + +A ++ + M   G  PN      L+ G  +   M   +K+
Sbjct: 462 LNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKI 521

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--- 138
            ++M           KP++  YGS+I G C  R +++TK +  EMK +GI+AN ++    
Sbjct: 522 LKQMTECN------IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTI 575

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  K  +A    + M   G+   I TY  L++G C  G V +A+  F  M   G 
Sbjct: 576 IDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGL 635

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V  Y+ LI+G CKN  +E A            KK+F+EM+   + P+       IDG
Sbjct: 636 QPNVAVYTSLIDGLCKNNCIESA------------KKLFDEMQCRGMTPDITAFTALIDG 683

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             K+G++ E + L   +     E  + ++ SL+ G  + G    A + FN++  K ++ +
Sbjct: 684 NLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPE 743

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            V    L+    K GQ+ +   L   ME  G
Sbjct: 744 EVLCICLLREYYKRGQLDEAIELKNEMERMG 774



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 156/338 (46%), Gaps = 26/338 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ L   F   G + +A++   +M  F   P   +C+ L+  L ++GN  L  K   +M+
Sbjct: 222 FDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMI 281

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                 G    P+VF Y  +ID LCK+  ++ ++ LF++M++ G++      N+L+    
Sbjct: 282 ------GAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYG 335

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L E   L   M   G  P I TY  L+N YC   K+  A   F  M   G  P+V 
Sbjct: 336 KVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVV 395

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +YS LI+ +CK            E ++ G  K+F +M+   ++P  FT    ID  CK G
Sbjct: 396 TYSTLIDAFCK------------EGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAG 443

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           ++ E  +L   +  +  +L +  + +L+ G CK G    A E+F  +    +  +   Y 
Sbjct: 444 NLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYT 503

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            L+H   K  +++    +L  M E     D+  + +++
Sbjct: 504 ALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSII 541



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%)

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           +K FN+M    + P  FT N+ ID LCK G +     LF  +        V  +NSLI G
Sbjct: 274 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG 333

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K G  E  + LFN++     V D++ YN LI+   K  ++ +       M+ NG   +
Sbjct: 334 YGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPN 393

Query: 349 VDTFNTLMISF 359
           V T++TL+ +F
Sbjct: 394 VVTYSTLIDAF 404


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 166/346 (47%), Gaps = 26/346 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N+++KG CM     D  +L+ +M    C PN+ T +TLI  L R G   L  ++H E
Sbjct: 217 VSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG---LFERVH-E 272

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++  M + G    P++  Y ++IDG+CK+  ++   ++   M   G+  N +        
Sbjct: 273 VLAQMSEHG--CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKG 330

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +  EA  LL  M Q+       T+  L++ +C  G V+  I L + M   G MPD
Sbjct: 331 LCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPD 390

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ +ING+CK   ++EA+             +   M  C   P T +  I + GLC 
Sbjct: 391 VITYTTVINGFCKEGLIDEAV------------MLLKSMSSCGCKPNTVSYTIVLKGLCS 438

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G  ++  EL   +    C      FN+LI   CK G+ E A EL  ++       D+++
Sbjct: 439 AGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 498

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           Y+ +I  LGK G+ ++   LL  M   G + +   ++++  +  ++
Sbjct: 499 YSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSRE 544



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 172/348 (49%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFN+LI   C  G      +++ +M+  GC P++    T+I G+ + G+    L++ 
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGH----LEVA 305

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANT----- 135
            E++N M  +G   KPNV CY +++ GLC      + ++L  EM  KD  ++  T     
Sbjct: 306 NEILNRMPSYG--LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILV 363

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+   +     LLE M+  G  P + TYT ++NG+C  G ++ A+ L  SM+  G  
Sbjct: 364 DFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCK 423

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  SY++++ G C      +A  +  +MI  G          C   P TF  N  I+ L
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG----------CPPNPVTF--NTLINFL 471

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G V + +EL   + ++ C   +  ++++I G  K G  E A EL N +  K +  + 
Sbjct: 472 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + Y+ +  AL +EG++ K   +  ++++     D   +N ++ S  ++
Sbjct: 532 IIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKR 579



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 165/340 (48%), Gaps = 32/340 (9%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL---RRTGNMNLTLKLHQE 84
           N ++   C +G + +A  L++K+A FGC  ++ + + ++ GL   +R G++    +L  E
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE---ELMDE 241

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           MV           PN+  + +LI  LC++ L ++  ++  +M + G   +  +       
Sbjct: 242 MVRV------DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG 295

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+  L  AN +L  M   GL P +  Y  +L G C   +   A  L   M +K    D
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLD 355

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             ++++L++ +C+N  V+  + +  +M+ +G             +P+  T    I+G CK
Sbjct: 356 DVTFNILVDFFCQNGLVDRVIELLEQMLSHG------------CMPDVITYTTVINGFCK 403

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E + L  ++    C+     +  +++G C  G +  A EL +++  +    + V 
Sbjct: 404 EGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVT 463

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +N LI+ L K+G +++   LL  M  NGC+ D+ +++T++
Sbjct: 464 FNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 162/380 (42%), Gaps = 50/380 (13%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N  TF  +++G C  G I DA +++ +M+  GC P       ++    R+G    +++
Sbjct: 108 PPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVR 167

Query: 81  LHQEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLC 111
           + + M               +N + + G +               + ++  Y +++ GLC
Sbjct: 168 VLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLC 227

Query: 112 KDRLVDQTKDLFMEM-----KDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIF 163
             +     ++L  EM         +  NTL   LC+       + +L  M + G  P I 
Sbjct: 228 MAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIR 287

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
            Y  +++G C  G + VA  + + M   G  P+V  Y+ ++ G C     +EA  +  EM
Sbjct: 288 MYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEM 347

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                       K C +   TF  NI +D  C+NG V  V+EL   +    C   V  + 
Sbjct: 348 F----------QKDCPLDDVTF--NILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYT 395

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           ++I G CK G+ + A  L   +S      + V+Y I++  L   G+      L+  M + 
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 344 GCALDVDTFNTLMISFLQKE 363
           GC  +  TFNTL I+FL K+
Sbjct: 456 GCPPNPVTFNTL-INFLCKK 474



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 28/294 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL+DVTFN L+  FC  G +    +L+++M + GC P+V T  T+I G  + G ++  + 
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL--- 136
           L    +  M   G   KPN   Y  ++ GLC   R VD  ++L  +M  +G   N +   
Sbjct: 413 L----LKSMSSCG--CKPNTVSYTIVLKGLCSAGRWVD-AEELMSQMIQQGCPPNPVTFN 465

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCKK  + +A  LL+ M+  G +P + +Y+ +++G    GK   A+ L + M  K
Sbjct: 466 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNK 525

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+   YS +            A  +SRE  +N   ++F+ +K   +  +    N  I
Sbjct: 526 GISPNTIIYSSI------------ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVI 573

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
             LCK       ++ F  +  + C      +  LI+G    G+ + A EL ++L
Sbjct: 574 SSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 33/207 (15%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTFN+LI   C +G +  A +L+K+M   GC P++ +  T+I GL + G     L+
Sbjct: 458 PPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALE 517

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           L   MVN      GI  PN   Y S+   L ++  V++   +F  +KD  I ++ +L   
Sbjct: 518 LLNVMVN-----KGI-SPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVL--- 568

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                                   Y  +++  C   + + AI  F  M   G MP+  +Y
Sbjct: 569 ------------------------YNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 604

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNG 227
           ++LI G       +EA  +  E+   G
Sbjct: 605 TMLIKGLASEGLAKEAQELLSELCSRG 631


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 166/346 (47%), Gaps = 26/346 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N+++KG CM     D  +L+ +M    C PN+ T +TLI  L R G   L  ++H E
Sbjct: 217 VSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG---LFERVH-E 272

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++  M + G    P++  Y ++IDG+CK+  ++   ++   M   G+  N +        
Sbjct: 273 VLAQMSEHG--CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKG 330

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +  EA  LL  M Q+       T+  L++ +C  G V+  I L + M   G MPD
Sbjct: 331 LCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPD 390

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ +ING+CK   ++EA+             +   M  C   P T +  I + GLC 
Sbjct: 391 VITYTTVINGFCKEGLIDEAV------------MLLKSMSSCGCKPNTVSYTIVLKGLCS 438

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G  ++  EL   +    C      FN+LI   CK G+ E A EL  ++       D+++
Sbjct: 439 AGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 498

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           Y+ +I  LGK G+ ++   LL  M   G + +   ++++  +  ++
Sbjct: 499 YSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSRE 544



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 172/348 (49%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFN+LI   C  G      +++ +M+  GC P++    T+I G+ + G+    L++ 
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGH----LEVA 305

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANT----- 135
            E++N M  +G   KPNV CY +++ GLC      + ++L  EM  KD  ++  T     
Sbjct: 306 NEILNRMPSYG--LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILV 363

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+   +     LLE M+  G  P + TYT ++NG+C  G ++ A+ L  SM+  G  
Sbjct: 364 DFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCK 423

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  SY++++ G C      +A  +  +MI  G          C   P TF  N  I+ L
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG----------CPPNPVTF--NTLINFL 471

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G V + +EL   + ++ C   +  ++++I G  K G  E A EL N +  K +  + 
Sbjct: 472 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + Y+ +  AL +EG++ K   +  ++++     D   +N ++ S  ++
Sbjct: 532 IIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKR 579



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 165/340 (48%), Gaps = 32/340 (9%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL---RRTGNMNLTLKLHQE 84
           N ++   C +G + +A  L++K+A FGC  ++ + + ++ GL   +R G++    +L  E
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE---ELMDE 241

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           MV           PN+  + +LI  LC++ L ++  ++  +M + G   +  +       
Sbjct: 242 MVRV------DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG 295

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+  L  AN +L  M   GL P +  Y  +L G C   +   A  L   M +K    D
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLD 355

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             ++++L++ +C+N  V+  + +  +M+ +G             +P+  T    I+G CK
Sbjct: 356 DVTFNILVDFFCQNGLVDRVIELLEQMLSHG------------CMPDVITYTTVINGFCK 403

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E + L  ++    C+     +  +++G C  G +  A EL +++  +    + V 
Sbjct: 404 EGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVT 463

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +N LI+ L K+G +++   LL  M  NGC+ D+ +++T++
Sbjct: 464 FNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 162/380 (42%), Gaps = 50/380 (13%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N  TF  +++G C  G I DA +++ +M+  GC P       ++    R+G    +++
Sbjct: 108 PPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVR 167

Query: 81  LHQEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLC 111
           + + M               +N + + G +               + ++  Y +++ GLC
Sbjct: 168 VLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLC 227

Query: 112 KDRLVDQTKDLFMEM-----KDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIF 163
             +     ++L  EM         +  NTL   LC+       + +L  M + G  P I 
Sbjct: 228 MAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIR 287

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
            Y  +++G C  G + VA  + + M   G  P+V  Y+ ++ G C     +EA  +  EM
Sbjct: 288 MYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEM 347

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                       K C +   TF  NI +D  C+NG V  V+EL   +    C   V  + 
Sbjct: 348 F----------QKDCPLDDVTF--NILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYT 395

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           ++I G CK G+ + A  L   +S      + V+Y I++  L   G+      L+  M + 
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 344 GCALDVDTFNTLMISFLQKE 363
           GC  +  TFNTL I+FL K+
Sbjct: 456 GCPPNPVTFNTL-INFLCKK 474



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 28/294 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL+DVTFN L+  FC  G +    +L+++M + GC P+V T  T+I G  + G ++  + 
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL--- 136
           L    +  M   G   KPN   Y  ++ GLC   R VD  ++L  +M  +G   N +   
Sbjct: 413 L----LKSMSSCG--CKPNTVSYTIVLKGLCSAGRWVD-AEELMSQMIQQGCPPNPVTFN 465

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCKK  + +A  LL+ M+  G +P + +Y+ +++G    GK   A+ L + M  K
Sbjct: 466 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNK 525

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+   YS +            A  +SRE  +N   ++F+ +K   +  +    N  I
Sbjct: 526 GISPNTIIYSSI------------ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVI 573

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
             LCK       ++ F  +  + C      +  LI+G    G+ + A EL ++L
Sbjct: 574 SSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 33/207 (15%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTFN+LI   C +G +  A +L+K+M   GC P++ +  T+I GL + G     L+
Sbjct: 458 PPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALE 517

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           L   MVN      GI  PN   Y S+   L ++  V++   +F  +KD  I ++ +L   
Sbjct: 518 LLNVMVN-----KGI-SPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVL--- 568

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                                   Y  +++  C   + + AI  F  M   G MP+  +Y
Sbjct: 569 ------------------------YNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 604

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNG 227
           ++LI G       +EA  +  E+   G
Sbjct: 605 TMLIKGLASEGLAKEAQELLSELCSRG 631


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 164/328 (50%), Gaps = 26/328 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT N ++K  C EG + +A   ++K+A  G  P+V T +TLI    + GN+     L  E
Sbjct: 385 VTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDE 444

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLC- 138
           MV      G   K + F   +++  LCK +  +  ++L      +G     ++  T++  
Sbjct: 445 MV------GKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAA 498

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K+     A RL + M++R L P I TY  L+ G C + ++  AI   +    KG +PD
Sbjct: 499 YFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPD 558

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+++I+ YCK  ++E A     +M+ N FK            P+  TCN  ++GLC 
Sbjct: 559 ETTYNIIIHAYCKEGDLENAFRFHNKMVENSFK------------PDVVTCNTLMNGLCL 606

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G + + ++LF +      ++ V  +N+LI+  CK G  + A   F+ +  K L  D   
Sbjct: 607 HGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFT 666

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
           YN+++ AL + G+ ++ + +L  + ++G
Sbjct: 667 YNVVLSALSEAGRSEEAHNMLHKLADSG 694



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 172/407 (42%), Gaps = 76/407 (18%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           +LG   A  + ++R        T+N+L+  F   G I+ A+++V+ M  +G  P++ T +
Sbjct: 258 MLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYN 317

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            L  GL + G ++   +L  EM     +  G   P+V  Y +L+D   K R       L 
Sbjct: 318 VLAMGLCQAGKVDEAFRLKDEM-----ERLGTALPDVVTYNTLVDACFKWRCSSDALRLL 372

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EM+DKG+    +        LCK+ KL EA   LE + + GL P + TY  L++ YC  
Sbjct: 373 EEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKA 432

Query: 176 GKVNVAIALFDSM-----------------------------------ARKGFMPDVFSY 200
           G V  A  L D M                                    ++GF+PD  SY
Sbjct: 433 GNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSY 492

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
             ++  Y K +N E A+ +  +MI         E KL   +P   T N  I GLC+   +
Sbjct: 493 GTVMAAYFKEYNPEPALRLWDQMI---------ERKL---IPSISTYNTLIKGLCRMERL 540

Query: 261 LEVMELFPTLEISNCELFVE--------IFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            E         I     FVE         +N +I   CK G  E A    NK+   +   
Sbjct: 541 KEA--------IDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKP 592

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           DVV  N L++ L   G++ K   L  S  E G  +DV T+NTL+ S 
Sbjct: 593 DVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSM 639



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 173/424 (40%), Gaps = 86/424 (20%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
            +L  F S I     P N  TFN L+   C +G + DA   +  M  FG  P+  T +TL
Sbjct: 191 ASLDVFRSLIELRLHP-NHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTL 249

Query: 66  ITGLRRTG---------------NMNLTLKLHQEMVNGMGDFGGI--------------Y 96
           +    R G                +  T   +  +V+     G I              +
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGF 309

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTLL--CKKTK-LVEAN 147
           +P++  Y  L  GLC+   VD+   L  EM+  G      +  NTL+  C K +   +A 
Sbjct: 310 EPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDAL 369

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           RLLE M  +G+ P + T+  ++   C  GK+  A+   + +A +G  PDV +Y+ LI+ Y
Sbjct: 370 RLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAY 429

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK  NV +A  +  EM+  G K             +TFT N  +  LCK     +  EL 
Sbjct: 430 CKAGNVAKAFTLMDEMVGKGLKM------------DTFTLNTVLYNLCKMKRYEDAEELL 477

Query: 268 -----------------------------PTLEISNCEL------FVEIFNSLIRGCCKF 292
                                        P L + +  +       +  +N+LI+G C+ 
Sbjct: 478 HSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRM 537

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              + A +  N+   K LV D   YNI+IHA  KEG ++        M EN    DV T 
Sbjct: 538 ERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTC 597

Query: 353 NTLM 356
           NTLM
Sbjct: 598 NTLM 601



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 106/223 (47%), Gaps = 13/223 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C K  L +A   L  M   GL+P   TY  LLN +C  G +  A AL   M R G  P  
Sbjct: 219 CSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQ 278

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ L++ + +   +++A  V   M   GF+            P+  T N+   GLC+ 
Sbjct: 279 PTYNTLVSAFARLGWIKQATKVVESMTAYGFE------------PDLRTYNVLAMGLCQA 326

Query: 258 GHVLEVMELFPTLEISNCELF-VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           G V E   L   +E     L  V  +N+L+  C K+     A  L  ++  K +   +V 
Sbjct: 327 GKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVT 386

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +NI++ +L KEG++++    L  + E G A DV T+NTL+ ++
Sbjct: 387 HNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAY 429



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 148/334 (44%), Gaps = 39/334 (11%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           S  +R + P ++V++ +++  +  E N   A +L  +M      P+++T +TLI GL R 
Sbjct: 479 SPPQRGFVP-DEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRM 537

Query: 73  GNMNLTLKLHQEMVNGMGDF--GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM---- 126
             +       +E ++ + +F   G+  P+   Y  +I   CK+  ++       +M    
Sbjct: 538 ERL-------KEAIDKLNEFVEKGLV-PDETTYNIIIHAYCKEGDLENAFRFHNKMVENS 589

Query: 127 -KDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
            K   +  NTL   LC   KL +A +L E  +++G    + TY  L+   C VG V+ A+
Sbjct: 590 FKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTAL 649

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
             FD M  KG  PD F+Y+V+++   +    EEA N+          K+ +  KL     
Sbjct: 650 HFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNM--------LHKLADSGKLS---- 697

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISN--CELFVEIFNSLIRGCCKFGIFEIASE 300
           ++F C +          V E  E  P  E S    +  +E +   + G C  G  + A  
Sbjct: 698 QSFACPLLKPSSADEADVKE-HEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKA 756

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           + +++  K +  D   Y  L+     EG IK++ 
Sbjct: 757 VLDEMMQKGMPVDCSTYITLM-----EGLIKRQK 785



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 102/248 (41%), Gaps = 51/248 (20%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+     F+ +   P ++ T+N +I  +C EG++ +A +   KM     +P+V TC+TL+
Sbjct: 543 AIDKLNEFVEKGLVP-DETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLM 601

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   G ++  LKL +  V          K +V  Y +LI  +CK   VD     F +M
Sbjct: 602 NGLCLHGKLDKALKLFESWVEKGK------KVDVITYNTLIQSMCKVGDVDTALHFFDDM 655

Query: 127 KDKGINAN--------TLLCKKTKLVEANRLLELMMQRG----------LNP-------- 160
           + KG+  +        + L +  +  EA+ +L  +   G          L P        
Sbjct: 656 EVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADV 715

Query: 161 ------------------VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                              + TY   LNG C  G++  A A+ D M +KG   D  +Y  
Sbjct: 716 KEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDCSTYIT 775

Query: 203 LINGYCKN 210
           L+ G  K 
Sbjct: 776 LMEGLIKR 783



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%)

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           FN L+   C  G    A    + +    L  D V YN L++A  ++G + +   LL  M+
Sbjct: 211 FNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMK 270

Query: 342 ENGCALDVDTFNTLMISFLQ 361
            +G A    T+NTL+ +F +
Sbjct: 271 RDGIAPTQPTYNTLVSAFAR 290


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 172/360 (47%), Gaps = 28/360 (7%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           S IR+   P+     NSLIK F   G + +   + +KM   G  P + T + L+ GL   
Sbjct: 176 SEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSA 235

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
             ++   ++ + M +G        KP+V  Y ++I G CK     +  +    M+ KG+ 
Sbjct: 236 MFVDSAERVFEVMESGR------IKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLE 289

Query: 133 ANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
           A+ +            +       L + M ++GL      ++ ++ G C  GK+N   A+
Sbjct: 290 ADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAV 349

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
           F++M RKG  P+V  Y+VLI+GY K  +VE+A+ +   MI  GF             P+ 
Sbjct: 350 FENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFN------------PDV 397

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T ++ ++GLCKNG V E M+ F T   +   +    ++SLI G  K G  + A  LF +
Sbjct: 398 VTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEE 457

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM-EENGCALDVDTFNTLMISFLQKE 363
           +S K    D   YN LI A  K G++ +   L   M EE GC   V T+ T++IS + KE
Sbjct: 458 MSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTY-TILISGMFKE 516



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 133/334 (39%), Gaps = 70/334 (20%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLLCKKTKLVEANRLL 150
           Y  N+ CY SL+D L   + VD+ + +  E++           N+L+    KL     LL
Sbjct: 148 YTHNLECYVSLVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELL 207

Query: 151 EL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +   M + G+ P ++TY  L+NG      V+ A  +F+ M      PDV +Y+ +I GY
Sbjct: 208 WVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGY 267

Query: 208 CKNFNVEEAMNVSREMILNGFK-----------------------KIFNEM--KLCNVVP 242
           CK    ++A+   R M   G +                        ++ EM  K   V P
Sbjct: 268 CKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPP 327

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
             F+  + I GLCK G + E   +F  +     +  V I+  LI G  K G  E A  L 
Sbjct: 328 HAFS--LVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLL 385

Query: 303 NKLSCKNLVADVVAYNI-----------------------------------LIHALGKE 327
           +++  +    DVV Y++                                   LI  LGK 
Sbjct: 386 HRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKA 445

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           G++ +   L   M E GC  D   +N L+ +F +
Sbjct: 446 GRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 479



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 33/195 (16%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N + ++SLI G    G + +A +L ++M+  GC  +    + LI    + G ++  L L
Sbjct: 430 INSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALAL 489

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
            + M    G         V+ Y  LI G            +F E +++            
Sbjct: 490 FKRMEEEEG-----CDQTVYTYTILISG------------MFKEHRNE------------ 520

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
              EA +L ++M+ +G+ P       L  G CL GKV  A  + D +A  G + D  +  
Sbjct: 521 ---EALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARACKILDELAPMGVILDA-ACE 576

Query: 202 VLINGYCKNFNVEEA 216
            +IN  CK   ++EA
Sbjct: 577 DMINTLCKAGRIKEA 591


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 163/339 (48%), Gaps = 26/339 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N+++KG CM     D  +L+ +M    C PN+ T +TLI  L R G   L  ++H E
Sbjct: 217 VSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG---LFERVH-E 272

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++  M + G    P++  Y ++IDG+CK+  ++   ++   M   G+  N +        
Sbjct: 273 VLAQMSEHG--CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKG 330

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +  EA  LL  M Q+       T+  L++ +C  G V+  I L + M   G MPD
Sbjct: 331 LCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPD 390

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ +ING+CK   ++EA+             +   M  C   P T +  I + GLC 
Sbjct: 391 VITYTTVINGFCKEGLIDEAV------------MLLKSMSSCGCKPNTVSYTIVLKGLCS 438

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G  ++  EL   +    C      FN+LI   CK G+ E A EL  ++       D+++
Sbjct: 439 AGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 498

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           Y+ +I  LGK G+ ++   LL  M   G + +   ++++
Sbjct: 499 YSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 172/348 (49%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFN+LI   C  G      +++ +M+  GC P++    T+I G+ + G+    L++ 
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGH----LEVA 305

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANT----- 135
            E++N M  +G   KPNV CY +++ GLC      + ++L  EM  KD  ++  T     
Sbjct: 306 NEILNRMPSYG--LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILV 363

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+   +     LLE M+  G  P + TYT ++NG+C  G ++ A+ L  SM+  G  
Sbjct: 364 DFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCK 423

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  SY++++ G C      +A  +  +MI  G          C   P TF  N  I+ L
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG----------CPPNPVTF--NTLINFL 471

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G V + +EL   + ++ C   +  ++++I G  K G  E A EL N +  K +  + 
Sbjct: 472 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + Y+ +  AL +EG++ K   +  ++++     D   +N ++ S  ++
Sbjct: 532 IIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKR 579



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 165/340 (48%), Gaps = 32/340 (9%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL---RRTGNMNLTLKLHQE 84
           N ++   C +G + +A  L++K+A FGC  ++ + + ++ GL   +R G++    +L  E
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE---ELMDE 241

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           MV           PN+  + +LI  LC++ L ++  ++  +M + G   +  +       
Sbjct: 242 MVRV------DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG 295

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+  L  AN +L  M   GL P +  Y  +L G C   +   A  L   M +K    D
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLD 355

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             ++++L++ +C+N  V+  + +  +M+ +G             +P+  T    I+G CK
Sbjct: 356 DVTFNILVDFFCQNGLVDRVIELLEQMLSHG------------CMPDVITYTTVINGFCK 403

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E + L  ++    C+     +  +++G C  G +  A EL +++  +    + V 
Sbjct: 404 EGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVT 463

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +N LI+ L K+G +++   LL  M  NGC+ D+ +++T++
Sbjct: 464 FNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 162/380 (42%), Gaps = 50/380 (13%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N  TF  +++G C  G I DA +++ +M+  GC P       ++    R+G    +++
Sbjct: 108 PPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVR 167

Query: 81  LHQEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLC 111
           + + M               +N + + G +               + ++  Y +++ GLC
Sbjct: 168 VLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLC 227

Query: 112 KDRLVDQTKDLFMEM-----KDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIF 163
             +     ++L  EM         +  NTL   LC+       + +L  M + G  P I 
Sbjct: 228 MAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIR 287

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
            Y  +++G C  G + VA  + + M   G  P+V  Y+ ++ G C     +EA  +  EM
Sbjct: 288 MYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEM 347

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                       K C +   TF  NI +D  C+NG V  V+EL   +    C   V  + 
Sbjct: 348 F----------QKDCPLDDVTF--NILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYT 395

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           ++I G CK G+ + A  L   +S      + V+Y I++  L   G+      L+  M + 
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 344 GCALDVDTFNTLMISFLQKE 363
           GC  +  TFNTL I+FL K+
Sbjct: 456 GCPPNPVTFNTL-INFLCKK 474



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 158/351 (45%), Gaps = 28/351 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL+DVTFN L+  FC  G +    +L+++M + GC P+V T  T+I G  + G ++  + 
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL--- 136
           L    +  M   G   KPN   Y  ++ GLC   R VD  ++L  +M  +G   N +   
Sbjct: 413 L----LKSMSSCG--CKPNTVSYTIVLKGLCSAGRWVD-AEELMSQMIQQGCPPNPVTFN 465

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCKK  + +A  LL+ M+  G +P + +Y+ +++G    GK   A+ L + M  K
Sbjct: 466 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNK 525

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+   YS +            A  +SRE  +N   ++F+ +K   +  +    N  I
Sbjct: 526 GISPNTIIYSSI------------ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVI 573

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK       ++ F  +  + C      +  LI+G    G+ + A EL ++L  +  +
Sbjct: 574 SSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              +  +  I    +E   +K    L S  +N   L ++    L I  L+ 
Sbjct: 634 RKHLMRHFGISNCTQENGKQKCEENLTSAVDNNYKLPIEILGFLEIQNLRP 684


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 167/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 225

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                              K+ +AN+L + M+ + L P   T+T L++G+C  G+V++A+
Sbjct: 226 ------------------NKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  EM + G +            P
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQ------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 316 DKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 376 REMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 161/345 (46%), Gaps = 28/345 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVK-KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           F+ LI G+   G +RDA +  +       C P   TC  ++  L +     L    ++E+
Sbjct: 75  FSGLITGYLESGFLRDAIECYRLTRENKLCVP-FDTCRKVLEHLMKLKYFKLVWGFYEEI 133

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           +         Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+   
Sbjct: 134 LECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGY 187

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  K  +P+ 
Sbjct: 188 IRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNG 247

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK 
Sbjct: 248 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNTLIYGLCKK 295

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + +  +L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY
Sbjct: 296 GDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 355

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD----LKQA 301

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++++ M   G   +P+   Y +LIDG CK+  +D   +    M  + I  + +      
Sbjct: 302 NDLIDEMSMKG--LQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALI 359

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G +
Sbjct: 360 SGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 420 PSVVTYNVLMNG 431



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 95/244 (38%), Gaps = 42/244 (17%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM-P 195
           LC    L EA  L+++++ R                   GK + +      +  KG    
Sbjct: 29  LCTHQMLSEAKSLIQVVVSRK------------------GKGSASAVFAAILETKGTQRS 70

Query: 196 DVFSYSVLINGYCKNFNVEEAM---NVSRE-----------------MILNGFKKI---F 232
           D++ +S LI GY ++  + +A+    ++RE                 M L  FK +   +
Sbjct: 71  DIYVFSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            E+  C      +  NI +   CK+G +     +F  +        V  +N+L+ G  + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  +    L + +    +  DV  Y++LI+ L KE ++   N L   M       +  TF
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTF 250

Query: 353 NTLM 356
            TL+
Sbjct: 251 TTLI 254


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 30/349 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            TFN LI G C +G+    ++LV  M   GC PN  T +TLI GL   G ++  L L   
Sbjct: 252 ATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDR 311

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL------- 136
           MV+          PN   YG++I+GL K  R +D  + L + M+++G   N         
Sbjct: 312 MVSSKC------VPNEVTYGTIINGLVKQGRALDGARVLVL-MEERGYIVNEYVYSVLVS 364

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            L K+ K  EA RL +  M +G       Y+ L++G C   K + A+ +   M  KG  P
Sbjct: 365 GLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAP 424

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           + F++S L+ G+ +  N  +A+ V ++M      KI       N        ++ I GLC
Sbjct: 425 NAFTFSSLMKGFFEVGNSHKAIEVWKDMT-----KI-------NCAENEVCYSVLIHGLC 472

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC--KNLVAD 313
           K+G V+E M ++  +  + C   V  ++S+I+G C  G  E A +L+N++ C   +   D
Sbjct: 473 KDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPD 532

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V+ YNIL +AL K+  I +   LL SM + GC  D+ T N  +    +K
Sbjct: 533 VITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRMLREK 581



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 13/204 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + ++  ++   C +G V+ AI LF  M  +  +PD ++Y  L++G CK   ++EA+++
Sbjct: 179 PNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSL 238

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             EM + G          C   P TF  N+ I+GLCK G    V +L   + +  C    
Sbjct: 239 LDEMQIEG----------CFPSPATF--NVLINGLCKKGDFTRVTKLVDNMFLKGCVPNE 286

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             +N+LI G C  G  + A  L +++     V + V Y  +I+ L K+G+      +L+ 
Sbjct: 287 VTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVL 346

Query: 340 MEENGCALDVDTFNTLMISFLQKE 363
           MEE G  ++   ++ L +S L KE
Sbjct: 347 MEERGYIVNEYVYSVL-VSGLFKE 369



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 33/189 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V ++ LI G C +G + +A  +  KM   GCRP+V    ++I GL   G++   LKL+
Sbjct: 460 NEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLY 519

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC---- 138
            EM+    D     +P+V  Y  L + LCK   + +  DL   M D+G + + + C    
Sbjct: 520 NEMLCLEPD----SQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFL 575

Query: 139 -------------------------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
                                    K+ + + A++++E+M+Q+ L+P   T+  +++  C
Sbjct: 576 RMLREKLDPPQDGAKFLDELVVRLLKRQRNLGASKIVEVMLQKFLSPKASTWARVVHELC 635

Query: 174 LVGKVNVAI 182
              K+   I
Sbjct: 636 QPKKIQAVI 644



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 19/218 (8%)

Query: 146 ANRLLELMMQRGLN----PVIFTYTPLLNGYCLVGKVNVAIALFDSMARK---GFMPDVF 198
            N+ +EL  +        P + ++  +LN     G  + A+  ++ +        +P+V 
Sbjct: 123 PNKAIELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVL 182

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           S++++I   CK   V+ A+            ++F EM +   VP+ +T    +DGLCK  
Sbjct: 183 SFNLIIKSMCKLGLVDNAI------------ELFREMPVRKCVPDAYTYCTLMDGLCKVD 230

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + E + L   ++I  C      FN LI G CK G F   ++L + +  K  V + V YN
Sbjct: 231 RIDEAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYN 290

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            LIH L  +G++ K   LL  M  + C  +  T+ T++
Sbjct: 291 TLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTII 328


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 176/338 (52%), Gaps = 26/338 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN L+ GFC  G++ +A  +  ++   G RP V + +TLI+G  ++G++    +L     
Sbjct: 251 FNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRL----- 305

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL---C 138
            G+ +  G+  P+VF + +LI+GLCK+  +D+   LF EM  +G+  N     TL+   C
Sbjct: 306 KGVMESEGVC-PDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQC 364

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  K+  A +  ++M+ +G+ P + TY  L+NG C VG +  A  L + M   G  PD  
Sbjct: 365 KGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKI 424

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G CK+ ++E A+ + R M+  G       ++L +V    FT    I GLC+ G
Sbjct: 425 TFTTLIDGCCKDGDMESALEIKRRMVEEG-------IELDDVA---FTA--LISGLCREG 472

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            V +   +   +  +  +     +  +I   CK G  ++  +L  ++     V  VV YN
Sbjct: 473 RVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYN 532

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            L++ L K+GQ+K    LL +M   G A +  T+N L+
Sbjct: 533 ALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILL 570



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 163/348 (46%), Gaps = 28/348 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL--TLKLH 82
           + F++LI  +   G   DA Q  + +        +  C+ L+  + R   + +  +  L+
Sbjct: 177 LVFDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALY 236

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
            E++    D G  Y P ++ +  L+ G CK   V   + +F E+  +G+       NTL+
Sbjct: 237 LEVL----DSG--YPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLI 290

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   + E  RL  +M   G+ P +FT++ L+NG C  G+++    LFD M  +G +
Sbjct: 291 SGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLV 350

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +++ LI+G CK   V+ A+   + M+  G            V P+  T N  I+GL
Sbjct: 351 PNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQG------------VRPDLVTYNALINGL 398

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G + E   L   +  S  +     F +LI GCCK G  E A E+  ++  + +  D 
Sbjct: 399 CKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDD 458

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           VA+  LI  L +EG++     +L  M   G   D  T+  ++  F +K
Sbjct: 459 VAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKK 506



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 126/260 (48%), Gaps = 28/260 (10%)

Query: 14  FIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71
           F   C R L  N VTF +LI G C  G +  A +  + M   G RP++ T + LI GL +
Sbjct: 341 FDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCK 400

Query: 72  TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
            G+    LK  + +VN M   G   KP+   + +LIDG CKD  ++   ++   M ++GI
Sbjct: 401 VGD----LKEARRLVNEMTASG--LKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGI 454

Query: 132 NANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
             + +        LC++ ++ +A R+L  M+  G  P   TYT +++ +C  G V +   
Sbjct: 455 ELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFK 514

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           L   M   G +P V +Y+ L+NG CK   ++ A            K + + M    V P 
Sbjct: 515 LLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNA------------KMLLDAMLNVGVAPN 562

Query: 244 TFTCNIFIDGLCKNGHVLEV 263
             T NI +DG  K+G  ++V
Sbjct: 563 DITYNILLDGHSKHGSSVDV 582



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 114/245 (46%), Gaps = 41/245 (16%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  AL  F   + +  RP + VT+N+LI G C  G++++A +LV +M   G +P+  T 
Sbjct: 368 KVDLALKNFQMMLAQGVRP-DLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITF 426

Query: 63  DTLITGLRRTGNMNLTLKLHQEMV---------------NGMGDFGGIY----------- 96
            TLI G  + G+M   L++ + MV               +G+   G ++           
Sbjct: 427 TTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLS 486

Query: 97  ---KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL---LCKKTKLVE 145
              KP+   Y  +ID  CK   V     L  EM+  G     +  N L   LCK+ ++  
Sbjct: 487 AGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKN 546

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  LL+ M+  G+ P   TY  LL+G+   G  +V + +F+S   KG + D  SY+ L+N
Sbjct: 547 AKMLLDAMLNVGVAPNDITYNILLDGHSKHGS-SVDVDIFNS--EKGLVTDYASYTALVN 603

Query: 206 GYCKN 210
              K 
Sbjct: 604 ESSKT 608


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 183/387 (47%), Gaps = 38/387 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  +   +R      N  T+N ++ G C  G  ++A  + ++M     +P++ T  T+I
Sbjct: 248 AMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMI 307

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL R+ +++   +++ EM+       G+  P+V  Y SL+ G C    V +    +  M
Sbjct: 308 HGLCRSTDVDSAARVYSEMIKT-----GLV-PDVVIYNSLLKGFCHAGRVGEAWKFWDSM 361

Query: 127 KDKGINANTL-------LCKKTKLVEANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKV 178
              GI   T        L     + +A  L EL+ +   L+P + T++ +++G C  G  
Sbjct: 362 SVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFA 421

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--------- 229
           N ++ + +     G   D FSYS +I+G CK+  +++A+ +  ++ ++ FK         
Sbjct: 422 NKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNAL 481

Query: 230 --------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                         +++++M   +  P T T N  I GLCK    LE       +    C
Sbjct: 482 INGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGC 541

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
            L V  + SLIRG C+    + A  L+N++  K L  DVV +NILIH L   G++ + + 
Sbjct: 542 MLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQ 601

Query: 336 LLLSM-EENGCALDVDTFNTLMISFLQ 361
           LL  M E+N C  +V T+NTLM  F +
Sbjct: 602 LLSEMKEKNNCCPNVVTYNTLMDGFYE 628



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 170/365 (46%), Gaps = 26/365 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F S   R   P + +T+++L+ GF     + +A  L+ +M ++  +P+    + L+
Sbjct: 178 AVTLFDSLRCRGLAP-DRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALL 236

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  R G     +++ +++V   G       PN+  Y  ++DGLCK  +  +  D++  M
Sbjct: 237 GGCFRNGEFEKAMRVWEQLVRDPG-----ASPNLATYNVMLDGLCKLGMFKEAGDVWERM 291

Query: 127 -----KDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
                +   I   T+   LC+ T +  A R+   M++ GL P +  Y  LL G+C  G+V
Sbjct: 292 VANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRV 351

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A   +DSM+  G   +V SY++++ G      V++A ++   +            K  
Sbjct: 352 GEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELL-----------EKDD 399

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
           ++ P+  T +  I GLC+ G   + +++      S  EL    ++S+I G CK G  + A
Sbjct: 400 SLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDA 459

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            +L+ K+S  +   +   YN LI+   +  +      +   M EN C+    T+NTL+  
Sbjct: 460 VKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHG 519

Query: 359 FLQKE 363
             + E
Sbjct: 520 LCKAE 524



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 164/369 (44%), Gaps = 38/369 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +NSL+KGFC  G + +A +    M+  G R NVT+ + ++ GL   G ++    L + 
Sbjct: 336 VIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWEL 394

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +     +      P++  + ++I GLC+    +++  +  E +  G   +          
Sbjct: 395 L-----EKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISG 449

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  +L +A +L E +      P    Y  L+NG+C   K + AI ++  MA     P 
Sbjct: 450 LCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPT 509

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------FKKIFNEMKLCN 239
             +Y+ LI+G CK     EA   +REM+  G                  KKI   + L N
Sbjct: 510 TITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWN 569

Query: 240 VV------PETFTCNIFIDGLCKNGHVLEVMELFPTL-EISNCELFVEIFNSLIRGCCKF 292
            +       +    NI I GLC  G V E  +L   + E +NC   V  +N+L+ G  + 
Sbjct: 570 QILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYET 629

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G F+ A+ L+  +    LV D+++YN  I  L    +  +   LL  M  +G      T+
Sbjct: 630 GCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITW 689

Query: 353 NTLMISFLQ 361
           N L+ + ++
Sbjct: 690 NILVRAVIK 698



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 156/318 (49%), Gaps = 31/318 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF+++I G C +G    + Q++++  T G   +  +  ++I+GL + G ++  +KL+++
Sbjct: 406 VTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEK 465

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           +   M  F    KPN   Y +LI+G C+         ++ +M +       I  NTL   
Sbjct: 466 I--SMDSF----KPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHG 519

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K +EA+R    M+++G    + TY  L+ G C   K++ A+AL++ +  KG   D
Sbjct: 520 LCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTD 579

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK-LCNVVPETFTCNIFIDGLC 255
           V  +++LI+G C    V+EA             ++ +EMK   N  P   T N  +DG  
Sbjct: 580 VVMHNILIHGLCSAGKVDEA------------SQLLSEMKEKNNCCPNVVTYNTLMDGFY 627

Query: 256 KNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           + G   +   L+  + I    L  +I  +N+ I+G C         +L N++    ++  
Sbjct: 628 ETGCFDKAASLW--MAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPT 685

Query: 314 VVAYNILIHALGKEGQIK 331
            + +NIL+ A+ K G I+
Sbjct: 686 AITWNILVRAVIKYGPIQ 703



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 120/251 (47%), Gaps = 28/251 (11%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           ++P N   +N+LI GFC      DA ++  +MA   C P   T +TLI GL +       
Sbjct: 471 FKP-NSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEA 529

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
            +  +EM+    + G +   N   YGSLI GLC+D+ +D    L+ ++ DKG+  + +  
Sbjct: 530 SRFTREML----EKGCMLDVNT--YGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMH 583

Query: 137 ------LCKKTKLVEANRLLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                 LC   K+ EA++LL  M ++    P + TY  L++G+   G  + A +L+ ++ 
Sbjct: 584 NILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAIL 643

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
             G +PD+ SY+  I G C      E +            ++ NEM    ++P   T NI
Sbjct: 644 ENGLVPDIISYNTRIKGLCSCNRTPEGV------------QLLNEMLASGIIPTAITWNI 691

Query: 250 FIDGLCKNGHV 260
            +  + K G +
Sbjct: 692 LVRAVIKYGPI 702



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 13/205 (6%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R + P + TY  +L   C+ G ++ A+ LFDS+  +G  PD  +YS L++G+ KN  ++ 
Sbjct: 153 RRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDN 212

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL-EISN 274
           A+             + +EM    V P+    N  + G  +NG   + M ++  L     
Sbjct: 213 AL------------YLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPG 260

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
               +  +N ++ G CK G+F+ A +++ ++   N   D++ Y  +IH L +   +    
Sbjct: 261 ASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAA 320

Query: 335 YLLLSMEENGCALDVDTFNTLMISF 359
            +   M + G   DV  +N+L+  F
Sbjct: 321 RVYSEMIKTGLVPDVVIYNSLLKGF 345



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 148/326 (45%), Gaps = 26/326 (7%)

Query: 48  KKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSL 106
           +++ +F GC P V + + L+    R    +        + +G   FG    PN+  Y  +
Sbjct: 108 RRLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGA--FGRRIAPNLQTYNIM 165

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLC---KKTKLVEANRLLELMMQRGL 158
           +  LC    +D+   LF  ++ +G     I  +TL+    K  +L  A  LL+ M    +
Sbjct: 166 LRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEV 225

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR-KGFMPDVFSYSVLINGYCKNFNVEEAM 217
            P    Y  LL G    G+   A+ +++ + R  G  P++ +Y+V+++G CK    +EA 
Sbjct: 226 QPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAG 285

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           +V   M+ N            N  P+  T    I GLC++  V     ++  +  +    
Sbjct: 286 DVWERMVAN------------NHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVP 333

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V I+NSL++G C  G    A + ++ +S    + +V +YNI++  L   G + K   L 
Sbjct: 334 DVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSG-IRNVTSYNIMLKGLFDGGMVDKATDLW 392

Query: 338 LSME-ENGCALDVDTFNTLMISFLQK 362
             +E ++  + D+ TF+T++    +K
Sbjct: 393 ELLEKDDSLSPDMVTFSTMIHGLCEK 418


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 170/353 (48%), Gaps = 37/353 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +LI G C +G I  A  L  +M  FG   N  T   LI GL + G      +++
Sbjct: 197 NVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMY 256

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M        G++ PN+  Y  +++ LCKD        +F EM+++G++ N +      
Sbjct: 257 EKMQEH-----GVF-PNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLI 310

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ K  EAN +++ M   G+NP + TY  L++G+C V K+  A++L   +  +G  
Sbjct: 311 GGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLS 370

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           P + +Y++L++G+CK  +   A  V +EM   G K                       ++
Sbjct: 371 PSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQL 430

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            + M+   + P+  T ++ I G C  G + E   LF ++     E    I+N+++ G CK
Sbjct: 431 RSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCK 490

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            G    A  LF ++  K L  +V +Y  +I  L KE + K+   L+  M ++G
Sbjct: 491 EGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSG 543



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 126/277 (45%), Gaps = 22/277 (7%)

Query: 91  DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTK 142
           +FG  + PNV  Y +LIDG CK   +++ KDLF EM   G+ AN          L K   
Sbjct: 191 EFG--FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGI 248

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
             +   + E M + G+ P + TY  ++N  C  G+   A  +FD M  +G   ++ +Y+ 
Sbjct: 249 KKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNT 308

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI G C            REM  N   ++ ++MK   + P   T N  IDG C    + +
Sbjct: 309 LIGGLC------------REMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGK 356

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            + L   L+       +  +N L+ G CK G    A ++  ++  + +    V Y ILI 
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILID 416

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              +   ++K   L  SMEE G   DV T++ L+  F
Sbjct: 417 TFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGF 453



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 124/273 (45%), Gaps = 20/273 (7%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLL 150
           +V+ +G +I G C+   ++++ DL +E+++ G + N ++        CKK ++ +A  L 
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             M + GL    +TYT L++G    G       +++ M   G  P++ +Y+ ++N  CK+
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKD 281

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
              ++A  V  EM   G          CN+V    T N  I GLC+     E  E+   +
Sbjct: 282 GRTKDAFKVFDEMRERGVS--------CNIV----TYNTLIGGLCREMKANEANEVMDQM 329

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           +       +  +N+LI G C       A  L   L  + L   +V YNIL+    K+G  
Sbjct: 330 KSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDT 389

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
                ++  MEE G      T+  L+ +F + +
Sbjct: 390 SGAGKVVKEMEERGIKPSKVTYTILIDTFARSD 422



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 122/264 (46%), Gaps = 19/264 (7%)

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKTKLVEANRLLELMMQRG 157
           Y  +I+   + + +D +   F EM DKG        N LL         N+      +  
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESK 156

Query: 158 LNPV--IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           +  V  ++++  ++ G C  G++  +  L   +   GF P+V  Y+ LI+G CK   +E+
Sbjct: 157 IKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEK 216

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A            K +F EM    +V   +T  + I GL KNG   +  E++  ++    
Sbjct: 217 A------------KDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGV 264

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              +  +N ++   CK G  + A ++F+++  + +  ++V YN LI  L +E +  + N 
Sbjct: 265 FPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANE 324

Query: 336 LLLSMEENGCALDVDTFNTLMISF 359
           ++  M+ +G   ++ T+NTL+  F
Sbjct: 325 VMDQMKSDGINPNLITYNTLIDGF 348



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI GFC++G + +AS+L K M      PN    +T++ G  + G+    L+L +EM
Sbjct: 445 TYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREM 504

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
                       PNV  Y  +I+ LCK+R   + + L  +M D GI  +
Sbjct: 505 EEKE------LPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPS 547


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 173/365 (47%), Gaps = 34/365 (9%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  AL  FG   +  + P + VTF++L+ G C+E  + +A     ++    C+PNV  
Sbjct: 125 SKLPFALSTFGKITKLGFHP-SLVTFSTLLHGLCVEDRVSEALHFFHQI----CKPNVIA 179

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
             TL+ GL R G +   + L   MV +G+       +PN   YG+++DG+CK        
Sbjct: 180 FTTLMNGLCREGRVVEAVALLDRMVEDGL-------QPNQITYGTIVDGMCKMGDTVSAL 232

Query: 121 DLFMEMKD-KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
           +L  +M++   I  N +        L K  +  +A  L   M ++G++P +FTY  ++NG
Sbjct: 233 NLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMING 292

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           +C  G+ + A  L   M  +   PDV ++SVLIN   K     EA            +++
Sbjct: 293 FCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEA------------EEL 340

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           +NEM    ++P T T N  IDG  K   +     +F  +    C   V  F+ LI G C 
Sbjct: 341 YNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCG 400

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               +   +L +++S + LVA+ + Y  LIH   + G +     LL  M  +G   +V T
Sbjct: 401 AKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVT 460

Query: 352 FNTLM 356
            NTL+
Sbjct: 461 CNTLL 465



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 170/383 (44%), Gaps = 48/383 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N +I GFC  G   +A +L+++M      P+V T   LI  L + G      +L+
Sbjct: 282 NLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELY 341

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM+       GI  PN   Y S+IDG  K   +D  + +F  M  KG + + +      
Sbjct: 342 NEMLPR-----GII-PNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILI 395

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C   ++ +  +LL  M +RGL     TYT L++G+C +G +N A+ L   M   G  
Sbjct: 396 DGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVC 455

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM-----------------------------IL 225
           P+V + + L++G C N  +++A+ + + M                             ++
Sbjct: 456 PNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLI 515

Query: 226 NGFK-----KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
           N  K     +++ EM    +VP+T T N  IDGLCK   + E  ++F ++        V 
Sbjct: 516 NEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVV 575

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            F +LI G CK G      E+F ++  + +VA+ + Y  LIH   + G I     +   M
Sbjct: 576 TFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEM 635

Query: 341 EENGCALDVDTFNTLMISFLQKE 363
             +G   D  T   ++     KE
Sbjct: 636 ISSGVYPDTITIRNMLTGLWSKE 658



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 46/279 (16%)

Query: 88  GMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143
            +  FG I K    P++  + +L+ GLC +  V +    F +           +CK    
Sbjct: 130 ALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQ-----------ICK---- 174

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
                           P +  +T L+NG C  G+V  A+AL D M   G  P+  +Y  +
Sbjct: 175 ----------------PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTI 218

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           ++G CK  +   A+N+ R+M            ++  + P     +  IDGL K+G   + 
Sbjct: 219 VDGMCKMGDTVSALNLLRKM-----------EEVSRIKPNVVIYSAIIDGLWKDGRQTDA 267

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             LF  ++       +  +N +I G C  G +  A  L  ++  + +  DVV +++LI+A
Sbjct: 268 QNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINA 327

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           L KEG+  +   L   M   G   +  T+N+++  F ++
Sbjct: 328 LVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQ 366



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 106/221 (47%), Gaps = 20/221 (9%)

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           I+++T L+  +C   K+  A++ F  + + GF P + ++S L++G C    V EA++   
Sbjct: 111 IYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFH 170

Query: 222 EM----------ILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           ++          ++NG  +         + + M    + P   T    +DG+CK G  + 
Sbjct: 171 QICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVS 230

Query: 263 VMELFPTL-EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
            + L   + E+S  +  V I++++I G  K G    A  LF+++  K +  ++  YN +I
Sbjct: 231 ALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMI 290

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +     G+  +   LL  M E   + DV TF+ L+ + +++
Sbjct: 291 NGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKE 331



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 101/237 (42%), Gaps = 20/237 (8%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L +A  L   M++    P +  +  LL     + + +V I+L   M  +    +++S+++
Sbjct: 57  LDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTI 116

Query: 203 LINGYCKNFNVEEAMN--------------VSREMILNGF---KKIFNEMKLCNVV--PE 243
           LI  +C    +  A++              V+   +L+G     ++   +   + +  P 
Sbjct: 117 LIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICKPN 176

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
                  ++GLC+ G V+E + L   +     +     + +++ G CK G    A  L  
Sbjct: 177 VIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLR 236

Query: 304 KL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           K+     +  +VV Y+ +I  L K+G+      L   M+E G + ++ T+N ++  F
Sbjct: 237 KMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGF 293


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 37/370 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN +I   C EG ++ A + +  M   G +PNV T +T+I G    G +         
Sbjct: 192 VTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE-----GAR 246

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL-- 137
           M+  +    G+ KP+ + YGS I G+CK+  +++   +  +MK+ G+       NTL+  
Sbjct: 247 MIFDLMKCRGV-KPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDG 305

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C K  L  A    + M++ GL P + TY  L++   L  K++ A  +   M+ KG +PD
Sbjct: 306 YCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPD 365

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFN 233
             +Y++LINGYC+  NV++A  +  EMI  G +                        +F 
Sbjct: 366 SVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFE 425

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           ++    + P+    N  IDG C NG++     +   ++          FN+L++G C+ G
Sbjct: 426 KIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREG 485

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A EL  ++  + +  D ++YN LI    K G +K    +   M   G    + T+N
Sbjct: 486 KVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYN 545

Query: 354 TLMISFLQKE 363
            L+    + E
Sbjct: 546 ALIQGLCKNE 555



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 169/362 (46%), Gaps = 27/362 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V GA M F     R  +P +  T+ S I G C EG + +AS +++KM   G RP   T 
Sbjct: 241 RVEGARMIFDLMKCRGVKP-DSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTY 299

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI G    GN+ +      +MV       G+  P V  Y  LI  L  D  +D+   +
Sbjct: 300 NTLIDGYCNKGNLEMAFDYRDKMVRE-----GLM-PTVSTYNMLIHALFLDCKMDEADGI 353

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM +KG+  +++         C+   + +A  L + M+ +G+ P   TYT L+     
Sbjct: 354 IKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSK 413

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G++  A  LF+ + RKG  PD+  ++ LI+G+C N N++ A  + +EM         ++
Sbjct: 414 RGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEM---------DQ 464

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           MK   VVP+  T N  + G C+ G V    EL   ++    +     +N+LI G  K G 
Sbjct: 465 MK---VVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGD 521

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A  + +++        ++ YN LI  L K  +      LL  M   G   + +T+ +
Sbjct: 522 MKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLS 581

Query: 355 LM 356
           L+
Sbjct: 582 LI 583



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 21/283 (7%)

Query: 83  QEMVNGMGDFGGIYKPNVFC-YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--- 138
           +E+ N +G   G+     +  Y  LI   C+ +  D   + F  MK KG+  +   C   
Sbjct: 103 REVFNELGVARGVLGIKTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDM 162

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  +  +A  L   M +  +   + T+  ++N  C  GK+  A      M   G 
Sbjct: 163 LSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGI 222

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V +Y+ +I+GYC    VE            G + IF+ MK   V P+++T   FI G
Sbjct: 223 KPNVVTYNTIIHGYCSRGRVE------------GARMIFDLMKCRGVKPDSYTYGSFISG 270

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           +CK G + E   +   ++          +N+LI G C  G  E+A +  +K+  + L+  
Sbjct: 271 MCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPT 330

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V  YN+LIHAL  + ++ + + ++  M E G   D  T+N L+
Sbjct: 331 VSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILI 373



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 14/190 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ SLI      G ++ A  L +K+   G  P++   + LI G    GNM+    + +E
Sbjct: 402 VTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKE 461

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLC- 138
           M     D   +  P+   + +L+ G C++  V+  ++L  EMK +GI       NTL+  
Sbjct: 462 M-----DQMKVV-PDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISG 515

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K+  + +A R+ + M+  G NP + TY  L+ G C   + + A  L   M  KG  P+
Sbjct: 516 YSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPN 575

Query: 197 VFSYSVLING 206
             +Y  LI G
Sbjct: 576 DNTYLSLIEG 585



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 12/198 (6%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  L+   C + + + A   FD M  KG +P V + + +++ + K+   E+A        
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAW------- 176

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                 ++ EM    +     T NI I+ LCK G + +  E    +E    +  V  +N+
Sbjct: 177 -----VLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNT 231

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +I G C  G  E A  +F+ + C+ +  D   Y   I  + KEG++++ + +L  M+E G
Sbjct: 232 IIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIG 291

Query: 345 CALDVDTFNTLMISFLQK 362
                 T+NTL+  +  K
Sbjct: 292 LRPTAVTYNTLIDGYCNK 309


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 167/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 102 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 161

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 162 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 206

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 207 ------------------SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 248

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A +            + +EM +  + P
Sbjct: 249 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHH------------LIDEMSMKELKP 296

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 297 DKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKML 356

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 357 REMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 410



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 56  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 115

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 116 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 169

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 170 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 229

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 277

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 278 DLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYT 337

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 338 ALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKK 381



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G++     L 
Sbjct: 227 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLI 286

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM   M +     KP+   Y +LIDG CK+  +D   +    M  + I  + +      
Sbjct: 287 DEM--SMKEL----KPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALI 340

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G +
Sbjct: 341 SGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 400

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 401 PSVVTYNVLMNG 412


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 159/337 (47%), Gaps = 45/337 (13%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           +  F   I  C  P +   FN L+  FC EG +R A  +   +  +  RP+V + +TL+ 
Sbjct: 120 VWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMN 179

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G  R G+++   +L   M +  G      +P+V+ Y  LI+GLCK+              
Sbjct: 180 GYIRLGDLDEGFRLKSAM-HATG-----VQPDVYTYSVLINGLCKE-------------- 219

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                        +K+ EAN +L  M+  GL P   T+T L++G+C  GKV++A+ ++  
Sbjct: 220 -------------SKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQ 266

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +GF+PD+ +Y+ LI G C+  ++ +A ++  EMI+ G K            P+  T 
Sbjct: 267 MLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLK------------PDKITY 314

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              IDG CK G +    EL   +   N  L    + +LI G C+ G    A ++  ++  
Sbjct: 315 TTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLT 374

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             L  D   Y ++++   K G +K  + LL  M+ NG
Sbjct: 375 VGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNG 411



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 163/368 (44%), Gaps = 33/368 (8%)

Query: 1   TSKVLGALMAF-GSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV 59
           TS V  A++   G+ I   Y       F+ L+  +   G +RDA Q  +           
Sbjct: 48  TSAVFAAILETKGTQISDLY------VFSGLMLAYLESGFVRDAIQCFRLTKKHKIWVPF 101

Query: 60  TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD---RLV 116
            TC  ++  L +     L    ++E++         Y P+++ +  L+   CK+   RL 
Sbjct: 102 DTCRKVLEHLMKLRYFRLVWGFYKEILECG------YPPSLYFFNILMHRFCKEGEMRLA 155

Query: 117 DQTKDLF--MEMKDKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
               D      ++   ++ NTL+    +   L E  RL   M   G+ P ++TY+ L+NG
Sbjct: 156 QMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLING 215

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
            C   K++ A  + + M   G +P+  +++ LI+G+CKN  V+ AM + ++M+  GF   
Sbjct: 216 LCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGF--- 272

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                    +P+  T N  I GLC+ G + +  +L   + +   +     + +LI G CK
Sbjct: 273 ---------LPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCK 323

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  EI  EL  ++  +N+  D V Y  LI  L +EG+      +L  M   G   D  T
Sbjct: 324 EGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGT 383

Query: 352 FNTLMISF 359
           +  +M  F
Sbjct: 384 YTMIMNEF 391



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 14/185 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M + G  P++ T +TLI GL R G++     L 
Sbjct: 240 NGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLV 299

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM+       G+ KP+   Y +LIDG CK+  ++ T +L   M  + I  + +      
Sbjct: 300 EEMI-----MKGL-KPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALI 353

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ +  +A ++L  M+  GL P   TYT ++N +C  G V  A  L   M R G +
Sbjct: 354 SGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPV 413

Query: 195 PDVFS 199
           P V +
Sbjct: 414 PGVVT 418



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 137 LCKKTKLVEANRLLELMMQR-GLNPVIFTYTPLLNGY-CLVGKVNVAIALFDSMARKGFM 194
           LC    LVEA  L+ +++ R G +     +  +L      +  + V   L  +    GF+
Sbjct: 23  LCTHQMLVEAKSLIRVVVSRKGKDSTSAVFAAILETKGTQISDLYVFSGLMLAYLESGFV 82

Query: 195 PDVFSYSVLINGY--------CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            D      L   +        C+   +E  M +    ++ GF   + E+  C   P  + 
Sbjct: 83  RDAIQCFRLTKKHKIWVPFDTCRKV-LEHLMKLRYFRLVWGF---YKEILECGYPPSLYF 138

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            NI +   CK G +     +F  +   +    V  FN+L+ G  + G  +    L + + 
Sbjct: 139 FNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +  DV  Y++LI+ L KE ++ + N +L  M +NG   +  TF TL+
Sbjct: 199 ATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLI 248



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G+ P ++ +++L++ +CK   +  A            + +F+ +   ++ P   + N  +
Sbjct: 131 GYPPSLYFFNILMHRFCKEGEMRLA------------QMVFDAITKWSLRPSVVSFNTLM 178

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +G  + G + E   L   +  +  +  V  ++ LI G CK    + A+E+ N++    LV
Sbjct: 179 NGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLV 238

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            + V +  LI    K G++     +   M   G   D+ T+NTL+    ++
Sbjct: 239 PNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRR 289


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 169/338 (50%), Gaps = 22/338 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V + ++I   C +G + +A+ L+ +M   GC  +V T D ++ G+   G +    +L 
Sbjct: 209 DAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARL- 267

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-NTLL---C 138
              V+ M   G +  P V  YG L+ GLC+ R  D+ + +   + +  +   NT++    
Sbjct: 268 ---VDRMMTKGCM--PGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCL 322

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
            + KL EA  L E M  +G  P   TY+ L++G C +G+++ A+ L   M +KGF P+V 
Sbjct: 323 AEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVV 382

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y+++++ +CKN             + +  + +  EM    +   +   N  I  LCK+G
Sbjct: 383 TYTIVLHSFCKNG------------MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDG 430

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + E M L   +    C   +  +N++I   C     E A  +F  L  + +VA+ + YN
Sbjct: 431 RMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYN 490

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +IHAL ++G+ +    L   M  +GC+LDV ++N L+
Sbjct: 491 TIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLI 528



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 159/331 (48%), Gaps = 37/331 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V FN++I G   EG + +A++L + M   GC+P+  T   L+ GL + G ++  ++L
Sbjct: 309 LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRL 368

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
            +EM          + PNV  Y  ++   CK+ + D T+ L  EM  KG+  N+      
Sbjct: 369 LREMEKKG------FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGM 422

Query: 136 --LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++ EA  L++ M  +G NP I +Y  ++   C   ++  A  +F+++  +G 
Sbjct: 423 IYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGV 482

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMIL----------NGFKK------------- 230
           + +  +Y+ +I+   ++   ++A+ +++EMIL          NG  K             
Sbjct: 483 VANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLV 542

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +  EM    + P   + NI I  LCK   V + +EL   +        +  +N+LI G C
Sbjct: 543 LLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLC 602

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           K G    A  L  KL  +N+  D++ YNILI
Sbjct: 603 KMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 26/290 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+  ++  FC  G   D   L+++M+  G   N    + +I  L + G M+  + L 
Sbjct: 380 NVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLI 439

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QEM +   +      P++  Y ++I  LC +  +++ + +F  + ++G+ AN +      
Sbjct: 440 QEMRSQGCN------PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 493

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L +  +  +A RL + M+  G +  + +Y  L+   C  G V+ ++ L + MA KG  
Sbjct: 494 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 553

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  SY++LI+  CK   V +A+ +S++M+  G              P+  T N  I+GL
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGL------------APDIVTYNTLINGL 601

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
           CK G +   + L   L   N    +  +N LI   CK  + + A+ L N+
Sbjct: 602 CKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNR 651



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 152/386 (39%), Gaps = 76/386 (19%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  +   + R   P    TF    +  C  G   +A  L++ MA  GC P+        
Sbjct: 158 ALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAV------ 211

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
                         L+Q +++ + D GG+ +        L+ G   D  V+   D+   M
Sbjct: 212 --------------LYQTVIHALCDQGGVTEAATLLNEMLLMGCAAD--VNTFDDVVRGM 255

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV----------- 175
                      C   ++ EA RL++ MM +G  P + TY  LL G C V           
Sbjct: 256 -----------CGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLG 304

Query: 176 --------------------GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
                               GK+  A  L+++M  KG  PD  +YS+L++G CK   +  
Sbjct: 305 RVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISS 364

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A+ + REM   GF             P   T  I +   CKNG   +   L   +     
Sbjct: 365 AVRLLREMEKKGF------------APNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 412

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
            L  + +N +I   CK G  + A  L  ++  +    D+ +YN +I+ L    Q+++  +
Sbjct: 413 TLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEH 472

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQ 361
           +  ++ E G   +  T+NT++ + L+
Sbjct: 473 MFENLLEEGVVANGITYNTIIHALLR 498



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 144/338 (42%), Gaps = 32/338 (9%)

Query: 53  FGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK 112
           FG +P+  + + +++ L R       L L++ MV+          P  F +G     LC+
Sbjct: 133 FGVQPSFRSYNVVLSVLARADCHADALALYRRMVHR-----DRVPPTTFTFGVAARALCR 187

Query: 113 DRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFT 164
               ++   L   M   G   + +L        C +  + EA  LL  M+  G    + T
Sbjct: 188 LGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNT 247

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA-------- 216
           +  ++ G C +G+V  A  L D M  KG MP V +Y  L+ G C+    +EA        
Sbjct: 248 FDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVP 307

Query: 217 -MNVS----------REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
            +NV            E  L    +++  M L    P+  T +I + GLCK G +   + 
Sbjct: 308 ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVR 367

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L   +E       V  +  ++   CK G+++    L  ++S K L  +   YN +I+AL 
Sbjct: 368 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALC 427

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           K+G++ +   L+  M   GC  D+ ++NT++      E
Sbjct: 428 KDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNE 465



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 49/231 (21%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV---------------------- 59
           LN   +N +I   C +G + +A  L+++M + GC P++                      
Sbjct: 414 LNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHM 473

Query: 60  -------------TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSL 106
                         T +T+I  L R G     ++L +EM+            +V  Y  L
Sbjct: 474 FENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSL------DVVSYNGL 527

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGL 158
           I  +CKD  VD++  L  EM +KGI  N +        LCK+ ++ +A  L + M+ +GL
Sbjct: 528 IKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGL 587

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            P I TY  L+NG C +G ++ A+ L + +  +   PD+ +Y++LI+ +CK
Sbjct: 588 APDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK 638


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 162/336 (48%), Gaps = 27/336 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L++ T   +++  C +G  +D S+  ++M   G  PNV      I GL +   +     +
Sbjct: 206 LDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHV 265

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-----KDKGINANTL 136
            +EMV      G   KPNV+ + +LIDGLCK    ++   LF+++         ++  T+
Sbjct: 266 LEEMV------GRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTV 319

Query: 137 L----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           +    C++ KL  A  LL  M+++GL P   TYT L+ G+C  G  + A  L + M ++G
Sbjct: 320 MIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEG 379

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F+P++++Y+ +I+G+CK   ++EA  V R     G K  F+++          T  I I 
Sbjct: 380 FLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLK--FDKI----------TYTILIT 427

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
             CK GH+   ++LF  +  + C   +E + SLI   C+    E + + F+K     L+ 
Sbjct: 428 EHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLP 487

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
               Y  +I    K G+      +   M +NGC  D
Sbjct: 488 TKQTYTSMIAGYCKVGRSTMALRVFERMVQNGCFAD 523



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 148/342 (43%), Gaps = 46/342 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++ +F +L+   C EG + +   L+  M  +G   +  TC  ++  L   G      +  
Sbjct: 172 DERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFF 231

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
           + M+  MG       PNV  Y + IDGLCK R V Q                        
Sbjct: 232 RRMLE-MGT-----PPNVVNYTAWIDGLCKRRYVKQ------------------------ 261

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-FMPDVFSYS 201
              A  +LE M+ RGL P ++T+T L++G C +G    A  LF  + +   + P+V +Y+
Sbjct: 262 ---AFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYT 318

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           V+I GYC+   +  A  +   M+  G K            P T T    I G CK G   
Sbjct: 319 VMIGGYCREGKLARAEMLLVRMVEQGLK------------PNTNTYTTLIGGHCKGGSFD 366

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
              EL   ++       +  +N++I G CK G  + A ++    + + L  D + Y ILI
Sbjct: 367 RAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILI 426

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               K+G I     L   M ENGC  D++ + +L+ ++ Q+ 
Sbjct: 427 TEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQR 468



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 150/392 (38%), Gaps = 83/392 (21%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           + A  +F+ R   P+       ++  F   G + +A+ +V +M + G    V T      
Sbjct: 87  VTAATAFVARGSLPMAHEVMRGMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETA----- 141

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
                   N  L++  E     G F  +Y   VF  G    G+C D              
Sbjct: 142 --------NWVLRVGLET----GSF--VYARKVF-DGMTRAGVCPD-------------- 172

Query: 128 DKGINANTLLC-KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           ++   A  ++C ++ K+ E + LL  M + G +    T T ++   C  G+       F 
Sbjct: 173 ERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFR 232

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M   G  P+V +Y+  I+G CK   V++A +V  EM+  G K            P  +T
Sbjct: 233 RMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLK------------PNVYT 280

Query: 247 CNIFIDGLCKNGHVLEVMELFPTL------------------------EISNCELFV--- 279
               IDGLCK G       LF  L                        +++  E+ +   
Sbjct: 281 HTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRM 340

Query: 280 ---------EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                      + +LI G CK G F+ A EL NK+  +  + ++  YN +I    K+G+I
Sbjct: 341 VEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKI 400

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           ++   +L      G   D  T+  L+    ++
Sbjct: 401 QEAYKVLRMATSQGLKFDKITYTILITEHCKQ 432


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 170/364 (46%), Gaps = 32/364 (8%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG-- 68
           +   IRR  +P N  TFN +I   C  G +  A  +++ M  +G  PNV + +TLI G  
Sbjct: 211 YKEMIRRKIQP-NVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYC 269

Query: 69  -LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
            L   G M     + +EMV           PN+  +  LIDG  KD  +  +  +F EM 
Sbjct: 270 KLGGNGKMYKADAVLKEMVENE------VSPNLTTFNILIDGFWKDDNLPGSLKVFKEML 323

Query: 128 DKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
           D+ +  N +        LC   K+ EA  + + M+  G+ P + TY  L+NG+C  G + 
Sbjct: 324 DQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMK 383

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
            A+ +FDS+  +G  P    Y++LI+ YCK   +++   +  EM   G            
Sbjct: 384 EALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG------------ 431

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           +VP+  T N  I GLC+NG++    +LF  L        V  F+ L+ G C  G    A+
Sbjct: 432 IVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLV-TFHILMEGYCSRGESRKAA 490

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME-ENGCALDVDTFNTLMIS 358
            L  ++S   L    + YNI++    KEG +K    +   ME E    ++V ++N L+  
Sbjct: 491 MLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQG 550

Query: 359 FLQK 362
           + QK
Sbjct: 551 YSQK 554



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 172/346 (49%), Gaps = 32/346 (9%)

Query: 19  YRPLNDVTFNSLIKGFCM---EGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           Y P N V++N+LI G+C     G +  A  ++K+M      PN+TT + LI G  +  N+
Sbjct: 254 YSP-NVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNL 312

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
             +LK+ +EM+    D   I  PNV  Y SLI+GLC    +++   +  +M   G+  N 
Sbjct: 313 PGSLKVFKEML----DQDVI--PNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNL 366

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +         CK   + EA  + + +  +G  P    Y  L++ YC +GK++   AL + 
Sbjct: 367 ITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEE 426

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M R+G +PDV +Y+ LI G C+N N+E A            KK+F+++     +P+  T 
Sbjct: 427 MEREGIVPDVGTYNCLIAGLCRNGNIEAA------------KKLFDQLT-NKGLPDLVTF 473

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           +I ++G C  G   +   L   +     +     +N +++G CK G  + A+ +  ++  
Sbjct: 474 HILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEK 533

Query: 308 -KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
            + L  +V +YN+L+    ++G+++  N LL  M E G   +  T+
Sbjct: 534 ERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 171/364 (46%), Gaps = 32/364 (8%)

Query: 9   MAFGSFIRRCYR--PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           + F +F R  Y    L+ ++   L+     +    D   L K+M     +PNV T + +I
Sbjct: 171 LGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVI 230

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK---DRLVDQTKDLF 123
             L +TG MN      ++++  M  +G  Y PNV  Y +LIDG CK   +  + +   + 
Sbjct: 231 NALCKTGKMNKA----RDVMEDMKVYG--YSPNVVSYNTLIDGYCKLGGNGKMYKADAVL 284

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EM +  ++ N            K   L  + ++ + M+ + + P + TY  L+NG C  
Sbjct: 285 KEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNG 344

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           GK+N AI + D M   G  P++ +Y  LING+CKN  ++EA++            +F+ +
Sbjct: 345 GKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALD------------MFDSV 392

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           K     P T   N+ ID  CK G + +   L   +E       V  +N LI G C+ G  
Sbjct: 393 KGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNI 452

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           E A +LF++L+ K L  D+V ++IL+      G+ +K   LL  M + G      T+N +
Sbjct: 453 EAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIM 511

Query: 356 MISF 359
           M  +
Sbjct: 512 MKGY 515


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 178/358 (49%), Gaps = 37/358 (10%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C +P+N V   SL+KG+C +GN+  A  L  K+   G  PN  T   LI G   +GN+  
Sbjct: 319 CGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEK 378

Query: 78  TLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-- 134
             +L+ +M +NG+        P+VF   SL+ G  K  L ++   LF E  D G+ AN  
Sbjct: 379 ASELYTQMKLNGI-------PPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGV-ANIF 430

Query: 135 ------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                 + LCK  K+ EA  LL+ M+ +G+ P + +Y  ++ G+C  G +++A ++F  M
Sbjct: 431 TYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDM 490

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             +   P+V +YS+LI+G  K  + E+A++            +F++M   N+ P  FT N
Sbjct: 491 LARDLKPNVVTYSILIDGNFKKGDSEKALD------------LFDQMLSLNIAPTDFTFN 538

Query: 249 IFIDGLCKNGHVLEVMELFPT-LE---ISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
             I+GLCK G + E  +     LE   I +C      +NS++ G  K G  + A  ++ +
Sbjct: 539 TIINGLCKVGQMSEARDKLKNFLEEGFIPSC----MTYNSIVDGFIKEGNIDSALAVYRE 594

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +    +  +VV Y  LI+   K  +I         M E G  LDV  ++ L+  F ++
Sbjct: 595 MCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKR 652



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 175/365 (47%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++N +I G C +GN+  AS +   M     +PNV T   LI G  + G+    L L 
Sbjct: 463 NVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLF 522

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
            +M++          P  F + ++I+GLCK   + + +D      ++G     +  N+++
Sbjct: 523 DQMLSLN------IAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIV 576

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K+  +  A  +   M + G++P + TYT L+NG+C   ++++A+   D M  KG  
Sbjct: 577 DGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLE 636

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGFKKIFN-EMKLC- 238
            DV +YS LI+G+CK  ++E A ++  E++              ++GF+ + N E  L  
Sbjct: 637 LDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVW 696

Query: 239 --NVVPETFTCNI-----FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
              ++ +   C++      IDGL K G ++   +L+  +        +  F+ L+ G C 
Sbjct: 697 YKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCN 756

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A ++  ++  KN+   V+ YN LI    +EG +K+   L   M + G   D  T
Sbjct: 757 KGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVT 816

Query: 352 FNTLM 356
           ++ L+
Sbjct: 817 YDILI 821



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 170/371 (45%), Gaps = 37/371 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N ++   C  G + +A  L+  M   G  PNV + + +I G  R GNM++   + 
Sbjct: 428 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVF 487

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL- 136
            +M+          KPNV  Y  LIDG  K    ++  DLF +M    I       NT+ 
Sbjct: 488 SDML------ARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTII 541

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ EA   L+  ++ G  P   TY  +++G+   G ++ A+A++  M   G  
Sbjct: 542 NGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVS 601

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKI 231
           P+V +Y+ LING+CK+  ++ A+    EM              +++GF         + +
Sbjct: 602 PNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDL 661

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F E+    + P     N  I G     ++   +  +  +        +  + +LI G  K
Sbjct: 662 FFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLK 721

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    AS+L+ ++  K +V D++ +++L++ L  +GQ++    +L  M+       V  
Sbjct: 722 EGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLI 781

Query: 352 FNTLMISFLQK 362
           +NTL+  + ++
Sbjct: 782 YNTLIAGYFRE 792



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 26/308 (8%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           D TFN++I G C  G + +A   +K     G  P+  T ++++ G  + GN++  L +++
Sbjct: 534 DFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYR 593

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           EM     +FG    PNV  Y SLI+G CK   +D       EM++KG+  +         
Sbjct: 594 EMC----EFG--VSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALID 647

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             CK+  +  A  L   +++ GL+P    Y  +++G+  +  +  A+  +  M       
Sbjct: 648 GFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPC 707

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D+ +Y+ LI+G  K   +  A ++  EM+  G            +VP+  T ++ ++GLC
Sbjct: 708 DLGTYTTLIDGLLKEGRLVFASDLYMEMLSKG------------IVPDIITFHVLVNGLC 755

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
             G +    ++   ++  N    V I+N+LI G  + G  + A  L +++  + LV D V
Sbjct: 756 NKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDV 815

Query: 316 AYNILIHA 323
            Y+ILI+ 
Sbjct: 816 TYDILING 823



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 161/401 (40%), Gaps = 73/401 (18%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+   FN L+  +     I +A      M      P V   + L+T L R   +     L
Sbjct: 148 LDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDL 207

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
           + +MV       GIY  + F    ++    K+  V++ ++ F E K++G+  +       
Sbjct: 208 YNKMV-----LRGIYGDH-FTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSII 261

Query: 136 --LLCKKTKLVEANRLLELMMQRGLNPVIFTYTP-------------------------- 167
              +CKK        LLE M +RG  P   T+T                           
Sbjct: 262 IQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGK 321

Query: 168 ---------LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
                    L+ GYC  G ++ A+ LF+ +   G  P+  +YSVLI G C + N+E+A  
Sbjct: 322 PMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASE 381

Query: 219 VSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLC 255
           +  +M LNG                         K+F+E   C V    FT NI +  LC
Sbjct: 382 LYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA-NIFTYNIMMSWLC 440

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G + E   L   +        V  +N +I G C+ G  ++AS +F+ +  ++L  +VV
Sbjct: 441 KGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVV 500

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            Y+ILI    K+G  +K   L   M     A    TFNT++
Sbjct: 501 TYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTII 541



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 19/197 (9%)

Query: 24  DVT-FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           DVT +++LI GFC   ++  A  L  ++   G  PN    +++I+G R   NM   L  +
Sbjct: 638 DVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWY 697

Query: 83  QEMVNGM--GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           ++M+N     D G         Y +LIDGL K+  +    DL+MEM  KGI  + +    
Sbjct: 698 KKMINDRIPCDLG--------TYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHV 749

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC K +L  A ++LE M ++ + P +  Y  L+ GY   G +  A  L D M  +G
Sbjct: 750 LVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRG 809

Query: 193 FMPDVFSYSVLINGYCK 209
            +PD  +Y +LING  K
Sbjct: 810 LVPDDVTYDILINGKFK 826



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 16/229 (6%)

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           T L ++  + E   L   M+ RG+    FT   ++      G+V  A   F     +G  
Sbjct: 193 TALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVK 252

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  +YS++I   CK  N    + +  EM   G+            VP   T    I   
Sbjct: 253 LDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGW------------VPSEATFTSVIVAC 300

Query: 255 CKNGHVLEVMELFPTLEISNC--ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
              G+++E + L    E+ NC   + + +  SL++G C  G  + A  LFNK++   L  
Sbjct: 301 VAQGNMVEALRL--KEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFP 358

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           + V Y++LI      G I+K + L   M+ NG    V   N+L+  +L+
Sbjct: 359 NKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLK 407



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 14/162 (8%)

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           VF+Y  L+N Y +   +E A++             FN M   +V+P     NI +  L +
Sbjct: 152 VFNY--LLNAYIRANRIENAIDC------------FNAMICQDVIPWVPYMNILLTALVR 197

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E+ +L+  + +          + ++R C K G  E A E F +   + +  D  A
Sbjct: 198 RNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGA 257

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
           Y+I+I A+ K+        LL  M+E G      TF +++++
Sbjct: 258 YSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVA 299


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 167/354 (47%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+  + 
Sbjct: 96  KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSY 155

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G ++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 156 NTLMNGYIRLGVLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 200

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +A+ L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 201 ------------------SKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 242

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  +M   G K            P
Sbjct: 243 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLK------------P 290

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G ++   E    L   N  L   ++ +LI G C+ G    A ++ 
Sbjct: 291 DKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKML 350

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 351 REMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 404



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +               TC  ++  L +     L    ++E++
Sbjct: 50  FSGLITAYLESGFLRDAIECYXLTRKHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEIL 109

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF-----MEMKDKGINANTLLCKKT 141
                    Y  +++ +  L+   CKD  +   + +F       ++   ++ NTL+    
Sbjct: 110 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYI 163

Query: 142 KL---VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +L    E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 164 RLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGV 223

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK G
Sbjct: 224 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNTLIYGLCKKG 271

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   +     +     + +LI GCCK G+   A E   +L  +N+  D V Y 
Sbjct: 272 DLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYT 331

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 332 ALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKK 375



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 221 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD----LKQA 276

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV----DQTKDLFME-MKDKGINANTL- 136
            ++++ M   G   KP+   Y +LIDG CK+ ++    +  K L  E ++   +    L 
Sbjct: 277 HDLIDDMSRKG--LKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALI 334

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+  GLNP   TYT ++N +C  G V     L   M R G +
Sbjct: 335 SGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 394

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 395 PSVVTYNVLMNG 406


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 166/354 (46%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 225

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P    +T L++G+C  G+V++A+
Sbjct: 226 ------------------SKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++  ++  EM + G K            P
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 316 DKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 376 REMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 158/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 135 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            ++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK G
Sbjct: 249 IFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNTLIYGLCKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +V  L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 297 DLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKK 400



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 16/193 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V F +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G++     L 
Sbjct: 246 NGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLI 305

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM + G+       KP+   Y +LIDG CK+  +D   +   +M  + I  + +     
Sbjct: 306 DEMSMKGL-------KPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTAL 358

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 194 MPDVFSYSVLING 206
           +P V +Y+VL+NG
Sbjct: 419 VPSVVTYNVLMNG 431


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 160/342 (46%), Gaps = 45/342 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K   ++  F   I  C  P +   FN L+  FC EG +R A  +  ++  +G RP+V + 
Sbjct: 115 KYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSF 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M       G   +P+V+ Y  LI+GLCK+         
Sbjct: 175 NTLMNGYIRLGDLDEGFRLKSAM------HGSGIQPDVYTYSVLINGLCKE--------- 219

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+  GL P   T+T L++G+C  G +++A+
Sbjct: 220 ------------------SKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAM 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
             +  M R+GF PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 262 EAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLK------------P 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    +    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKML 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            ++    L  D   Y ++I+   K+G +K  + LL  M+ +G
Sbjct: 370 REMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDG 411



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 130/275 (47%), Gaps = 20/275 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---CKKTKLVEAN 147
           Y  +++ +  L+   CK+  +   + +F E+   G+       NTL+    +   L E  
Sbjct: 132 YPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGF 191

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           RL   M   G+ P ++TY+ L+NG C   K+N A  LFD M   G +P+  +++ LI+G+
Sbjct: 192 RLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGH 251

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK  +++ AM   +EM+  GF             P+  T N  I GLCK G + +  +L 
Sbjct: 252 CKTGSIDLAMEAYKEMLRQGFS------------PDLITYNTLIYGLCKEGDLKQAQDLI 299

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             + +   +     + +LI G CK G  E A +   ++  +N+  D VAY  LI  L +E
Sbjct: 300 DEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCRE 359

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           GQ      +L  M   G   D  T+  ++  F +K
Sbjct: 360 GQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKK 394



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 49/213 (23%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI G C E  + DA++L  +M   G  PN  T  TLI G  +TG+++L ++ ++EM
Sbjct: 208 TYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEM 267

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------- 136
           +         + P++  Y +LI GLCK+  + Q +DL  EM  KG+  + +         
Sbjct: 268 LRQG------FSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGS 321

Query: 137 ----------------------------------LCKKTKLVEANRLLELMMQRGLNPVI 162
                                             LC++ + V A ++L  M+  GL P  
Sbjct: 322 CKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDN 381

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            TYT ++N +C  G V +   L   M R G +P
Sbjct: 382 GTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVP 414



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 100/246 (40%), Gaps = 44/246 (17%)

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM--ARKGF 193
            LC    L EA  L+++++ R                   GK + A A+F+++  A+   
Sbjct: 22  FLCTHQMLPEAKNLIQIVVSRK------------------GK-DSASAVFEAILEAKGAQ 62

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMN---VSRE-----------------MILNGFKKI-- 231
             DV+ +S LI  Y ++  + +A+    ++RE                 M L  FK +  
Sbjct: 63  RSDVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWG 122

Query: 232 -FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
            + E+  C      +  NI +   CK G +     +F  +        V  FN+L+ G  
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYI 182

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           + G  +    L + +    +  DV  Y++LI+ L KE ++   N L   M  NG   +  
Sbjct: 183 RLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGV 242

Query: 351 TFNTLM 356
           TF TL+
Sbjct: 243 TFTTLI 248


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 162/343 (47%), Gaps = 28/343 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+  LI+GF   G++  A QL+++M + G   N     TL+ GL   G +   L+  
Sbjct: 8   NKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHF 67

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M            P+V  Y +L+  LCK    D+ + +  EM  +G   +T+      
Sbjct: 68  RAMAKDCA-------PDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLI 120

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC-LVGKVNVAIALFDSMARKGF 193
             LCK     +A R+LE ++QRG+      +  ++   C     V +A  +   +  KGF
Sbjct: 121 DGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGF 180

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P V  ++++ING+CK  +++ A  +   MI  G             VP  FT  I I G
Sbjct: 181 TPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKG------------CVPNVFTFTILITG 228

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK   V E  +L   +    C   V  ++++I G CK G  + A ELF  +  +N   +
Sbjct: 229 LCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPN 288

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           VV +NILI  L K  +I++   L   M E GCA D+ T+N+L+
Sbjct: 289 VVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLI 331



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 170/347 (48%), Gaps = 29/347 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V   +L+KG C  G + +A +  + MA   C P+V T   L+  L + G  +    + 
Sbjct: 43  NAVVHTTLMKGLCDAGRVVEALEHFRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGML 101

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-NANTL----- 136
           +EM+           P+   + +LIDGLCK    +Q   +  ++  +G+ N++       
Sbjct: 102 REMI------ARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETII 155

Query: 137 --LCKKTKLVE-ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             LC K   VE A+++L +++ +G  P +  +  ++NG+C    ++ A  L + M  KG 
Sbjct: 156 QRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGC 215

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P+VF++++LI G CK   V EA  +  +M+  G          C+  P   T +  I+G
Sbjct: 216 VPNVFTFTILITGLCKANRVGEAQQLLEKMVTGG----------CS--PNVVTYSTVING 263

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G V +  ELF  +E  NC   V   N LI G CK    E A +L++++       D
Sbjct: 264 LCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPD 323

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENG-CALDVDTFNTLMISF 359
           ++ YN LI  L K  Q+ +   L  ++ E+G  A +  T++TL   +
Sbjct: 324 IITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGY 370



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 167/355 (47%), Gaps = 34/355 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TF  LI G C    + +A QL++KM T GC PNV T  T+I GL + G ++   +L 
Sbjct: 218 NVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELF 277

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL- 136
           Q M            PNV  +  LIDGLCK + +++ + L+  M++ G     I  N+L 
Sbjct: 278 QLMERRN------CPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLI 331

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPV-IFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             LCK  ++ EA +L + + + G++     TY+ L +GY  +G++  A  +F  +  KGF
Sbjct: 332 DGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGF 391

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ +Y+ LI  YCK     E + +  EM   GF             P   T +  + G
Sbjct: 392 SPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFP------------PRVNTLSAVLGG 439

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG----IFEIASELFNKLSCKN 309
           L +  H    ++LF ++    C     I+N ++ G  +         +  ++ +K   + 
Sbjct: 440 LFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRD-RK 498

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM--ISFLQK 362
                 A + L+ +L + G+      LL  M E G A  V ++N L+  +S LQ+
Sbjct: 499 FNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQR 553



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 156/350 (44%), Gaps = 26/350 (7%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R C  P N VT N LI G C    I +A QL  +M   GC P++ T ++LI GL ++  +
Sbjct: 283 RNC--PPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQV 340

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINAN 134
           +   +L Q +        G+   N   Y +L  G     R+ D  + +F  + DKG + +
Sbjct: 341 DEAFQLFQTIPE-----SGVSAANAVTYSTLFHGYAALGRMADACR-IFSMLVDKGFSPD 394

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                      CK ++ VE   L+E M  +G  P + T + +L G         AI LFD
Sbjct: 395 LATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFD 454

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
           SMA +G   D   Y++++ G  +     +A+ V  E +++   + FN        P +  
Sbjct: 455 SMAARGCTDDALIYNLVVEGMARASKHNKALAV-LEQVIDKRDRKFN--------PSSSA 505

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            +  ++ LC+ G   +  +L   +        V  +N L+ G  +   ++ A+++F  + 
Sbjct: 506 VDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMV 565

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                 ++   N++I  L    ++     L+  M + GC  D++T NTL+
Sbjct: 566 SAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLI 615



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 12/210 (5%)

Query: 29  SLIKGFCMEGN-IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           S + G   EGN    A QL   MA  GC  +    + ++ G+ R    N  L + +++++
Sbjct: 434 SAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVID 493

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKTK 142
                   + P+     +L++ LC+    D  K L  +M ++G  A     N LL   ++
Sbjct: 494 KRDR---KFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSR 550

Query: 143 LV---EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           L    EA ++ E M+  G  P I T   +++  C   KV+ A  L   M++ G  PD+ +
Sbjct: 551 LQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIET 610

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFK 229
            + LI GYCK+   + A  +  EM   G +
Sbjct: 611 CNTLIGGYCKSGRADLARKLLEEMTEAGLE 640



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 95/240 (39%), Gaps = 51/240 (21%)

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF-------------------- 193
           M R   P  FTY  L+ G+   G +++AI L + M   GF                    
Sbjct: 1   MARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRV 60

Query: 194 --------------MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
                          PDV +Y+ L++  CK    +EA  + REMI  G            
Sbjct: 61  VEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARG------------ 108

Query: 240 VVPETFTCNIFIDGLCKNG---HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
             P+T T +  IDGLCK G       V+E      + N +   E    + R C K+   E
Sbjct: 109 CAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETI--IQRLCNKYNSVE 166

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +AS++   +  K     V+ +N++I+   K   +     LL  M E GC  +V TF  L+
Sbjct: 167 LASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILI 226



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T N +I   C    + DA +LV++M+  GC P++ TC+TLI G  ++G  +L  KL +EM
Sbjct: 575 TVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEM 634

Query: 86  VNG 88
              
Sbjct: 635 TEA 637


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 178/358 (49%), Gaps = 37/358 (10%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C +P+N V   SL+KG+C +GN+  A  L  K+   G  PN  T   LI G   +GN+  
Sbjct: 359 CGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEK 418

Query: 78  TLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-- 134
             +L+ +M +NG+        P+VF   SL+ G  K  L ++   LF E  D G+ AN  
Sbjct: 419 ASELYTQMKLNGI-------PPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGV-ANIF 470

Query: 135 ------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                 + LCK  K+ EA  LL+ M+ +G+ P + +Y  ++ G+C  G +++A ++F  M
Sbjct: 471 TYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDM 530

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             +   P+V +YS+LI+G  K  + E+A++            +F++M   N+ P  FT N
Sbjct: 531 LARDLKPNVVTYSILIDGNFKKGDSEKALD------------LFDQMLSLNIAPTDFTFN 578

Query: 249 IFIDGLCKNGHVLEVMELFPT-LE---ISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
             I+GLCK G + E  +     LE   I +C      +NS++ G  K G  + A  ++ +
Sbjct: 579 TIINGLCKVGQMSEARDKLKNFLEEGFIPSC----MTYNSIVDGFIKEGNIDSALAVYRE 634

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +    +  +VV Y  LI+   K  +I         M E G  LDV  ++ L+  F ++
Sbjct: 635 MCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKR 692



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 173/369 (46%), Gaps = 45/369 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++N +I G C +GN+  AS +   M     +PNV T   LI G  + G+    L L 
Sbjct: 503 NVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLF 562

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
            +M++          P  F + ++I+GLCK   + + +D      ++G     +  N+++
Sbjct: 563 DQMLSLN------IAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIV 616

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K+  +  A  +   M + G++P + TYT L+NG+C   ++++A+   D M  KG  
Sbjct: 617 DGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLE 676

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG--------------------------- 227
            DV +YS LI+G+CK  ++E A ++  E++  G                           
Sbjct: 677 LDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVW 736

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
           +KK+ N+   C++   T+T    IDGL K G ++   +L+  +        +  F+ L+ 
Sbjct: 737 YKKMINDRIPCDL--GTYTT--LIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVN 792

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C  G  E A ++  ++  KN+   V+ YN LI    +EG +K+   L   M + G   
Sbjct: 793 GLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVP 852

Query: 348 DVDTFNTLM 356
           D  T++ L+
Sbjct: 853 DDVTYDILI 861



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 170/371 (45%), Gaps = 37/371 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N ++   C  G + +A  L+  M   G  PNV + + +I G  R GNM++   + 
Sbjct: 468 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVF 527

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL- 136
            +M+          KPNV  Y  LIDG  K    ++  DLF +M    I       NT+ 
Sbjct: 528 SDML------ARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTII 581

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ EA   L+  ++ G  P   TY  +++G+   G ++ A+A++  M   G  
Sbjct: 582 NGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVS 641

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKI 231
           P+V +Y+ LING+CK+  ++ A+    EM              +++GF         + +
Sbjct: 642 PNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDL 701

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F E+    + P     N  I G     ++   +  +  +        +  + +LI G  K
Sbjct: 702 FFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLK 761

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    AS+L+ ++  K +V D++ +++L++ L  +GQ++    +L  M+       V  
Sbjct: 762 EGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLI 821

Query: 352 FNTLMISFLQK 362
           +NTL+  + ++
Sbjct: 822 YNTLIAGYFRE 832



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 26/308 (8%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           D TFN++I G C  G + +A   +K     G  P+  T ++++ G  + GN++  L +++
Sbjct: 574 DFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYR 633

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           EM     +FG    PNV  Y SLI+G CK   +D       EM++KG+  +         
Sbjct: 634 EMC----EFG--VSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALID 687

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             CK+  +  A  L   +++ GL+P    Y  +++G+  +  +  A+  +  M       
Sbjct: 688 GFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPC 747

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D+ +Y+ LI+G  K   +  A ++  EM+  G            +VP+  T ++ ++GLC
Sbjct: 748 DLGTYTTLIDGLLKEGRLVFASDLYMEMLSKG------------IVPDIITFHVLVNGLC 795

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
             G +    ++   ++  N    V I+N+LI G  + G  + A  L +++  + LV D V
Sbjct: 796 NKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDV 855

Query: 316 AYNILIHA 323
            Y+ILI+ 
Sbjct: 856 TYDILING 863



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 161/401 (40%), Gaps = 73/401 (18%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+   FN L+  +     I +A      M      P V   + L+T L R   +     L
Sbjct: 188 LDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDL 247

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
           + +MV       GIY  + F    ++    K+  V++ ++ F E K++G+  +       
Sbjct: 248 YNKMV-----LRGIYGDH-FTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSII 301

Query: 136 --LLCKKTKLVEANRLLELMMQRGLNPVIFTYTP-------------------------- 167
              +CKK        LLE M +RG  P   T+T                           
Sbjct: 302 IQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGK 361

Query: 168 ---------LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
                    L+ GYC  G ++ A+ LF+ +   G  P+  +YSVLI G C + N+E+A  
Sbjct: 362 PMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASE 421

Query: 219 VSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLC 255
           +  +M LNG                         K+F+E   C V    FT NI +  LC
Sbjct: 422 LYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA-NIFTYNIMMSWLC 480

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G + E   L   +        V  +N +I G C+ G  ++AS +F+ +  ++L  +VV
Sbjct: 481 KGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVV 540

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            Y+ILI    K+G  +K   L   M     A    TFNT++
Sbjct: 541 TYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTII 581



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 19/197 (9%)

Query: 24  DVT-FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           DVT +++LI GFC   ++  A  L  ++   G  PN    +++I+G R   NM   L  +
Sbjct: 678 DVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWY 737

Query: 83  QEMVNGM--GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           ++M+N     D G         Y +LIDGL K+  +    DL+MEM  KGI  + +    
Sbjct: 738 KKMINDRIPCDLG--------TYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHV 789

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC K +L  A ++LE M ++ + P +  Y  L+ GY   G +  A  L D M  +G
Sbjct: 790 LVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRG 849

Query: 193 FMPDVFSYSVLINGYCK 209
            +PD  +Y +LING  K
Sbjct: 850 LVPDDVTYDILINGKFK 866



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 16/229 (6%)

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           T L ++  + E   L   M+ RG+    FT   ++      G+V  A   F     +G  
Sbjct: 233 TALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVK 292

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  +YS++I   CK  N    + +  EM   G+            VP   T    I   
Sbjct: 293 LDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGW------------VPSEATFTSVIVAC 340

Query: 255 CKNGHVLEVMELFPTLEISNC--ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
              G+++E + L    E+ NC   + + +  SL++G C  G  + A  LFNK++   L  
Sbjct: 341 VAQGNMVEALRL--KEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFP 398

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           + V Y++LI      G I+K + L   M+ NG    V   N+L+  +L+
Sbjct: 399 NKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLK 447



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 14/162 (8%)

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           VF+Y  L+N Y +   +E A++             FN M   +V+P     NI +  L +
Sbjct: 192 VFNY--LLNAYIRANRIENAIDC------------FNAMICQDVIPWVPYMNILLTALVR 237

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E+ +L+  + +          + ++R C K G  E A E F +   + +  D  A
Sbjct: 238 RNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGA 297

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
           Y+I+I A+ K+        LL  M+E G      TF +++++
Sbjct: 298 YSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVA 339


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 162/344 (47%), Gaps = 48/344 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N VTF+ +I G C  G  + A  +V+ M  +G  P+V T +T+I G  + G M     L
Sbjct: 227 VNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADAL 286

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
            +EMV           PN   +  LIDG C+D  V   K +F EM+              
Sbjct: 287 LKEMV------AKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQ-------------- 326

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                        ++GL P + TY  L+NG C  GK++ A+ L D M+  G  P+V +Y+
Sbjct: 327 -------------RQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYN 373

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            LING+CK   ++EA    REM+ +  K+         + P   T N  ID   K G + 
Sbjct: 374 ALINGFCKKKMLKEA----REMLDDIGKR--------GLAPNVITFNTLIDAYGKAGRMD 421

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           +   L   +  +     V  +N LI G C+ G  + A +L  ++    L AD+V YNIL+
Sbjct: 422 DAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILV 481

Query: 322 HALGKEGQIKKENYLLLS---MEENGCALDVDTFNTLMISFLQK 362
            AL K+G+ +K   LL     ME+ G   ++ T+N L+  F  K
Sbjct: 482 DALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNK 525



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 157/318 (49%), Gaps = 31/318 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N++I G+C  G +  A  L+K+M      PN  T + LI G  R  N+    K+ +E
Sbjct: 265 ITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEE 324

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           M   G+       +PNV  Y SLI+GLC +  +D+   L  +M   G+  N +       
Sbjct: 325 MQRQGL-------QPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN 377

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             CKK  L EA  +L+ + +RGL P + T+  L++ Y   G+++ A  L   M   G  P
Sbjct: 378 GFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           +V +Y+ LI G+C+  NV+EA  +++EM  NG K             +  T NI +D LC
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLK------------ADLVTYNILVDALC 485

Query: 256 KNGHVLEVMELFPT---LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           K G   + + L      +E       +  +N LI+G C  G  E A+ L N++  K L+ 
Sbjct: 486 KKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIP 545

Query: 313 DVVAYNILIHALGKEGQI 330
           +   Y+IL   + ++G I
Sbjct: 546 NRTTYDILRDEMMEKGFI 563



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 174/372 (46%), Gaps = 32/372 (8%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFN---SLIKGFCMEGNIRDAS--QLVKKMATFGC 55
           T K  GA+     F R  +   N   +N   +L+  F    +  +++    +  + ++GC
Sbjct: 97  TQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGC 156

Query: 56  RPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL 115
             N    D L+    + G M+L L    E  +  GD+G  ++ +      ++  L K+  
Sbjct: 157 -ANSIIVDMLVWAYVKNGEMDLAL----EGFDRAGDYG--FRLSALSCNPMLVSLVKEGR 209

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           +   + ++ EM  + I  N +        LCK  K  +A  ++E M   G +P + TY  
Sbjct: 210 IGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNT 269

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +++GYC  GK+  A AL   M  K   P+  ++++LI+G+C++ NV  A           
Sbjct: 270 IIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAA----------- 318

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
            KK+F EM+   + P   T N  I+GLC NG + E + L   +     +  V  +N+LI 
Sbjct: 319 -KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN 377

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G CK  + + A E+ + +  + L  +V+ +N LI A GK G++     L   M + G   
Sbjct: 378 GFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437

Query: 348 DVDTFNTLMISF 359
           +V T+N L++ F
Sbjct: 438 NVSTYNCLIVGF 449



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 162/348 (46%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +  + L+  +   G +  A +   +   +G R +  +C+ ++  L + G + +   ++
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVY 217

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           +EM+            NV  +  +I+GLCK     +  D+  +MK  G     I  NT++
Sbjct: 218 KEMIRRR------IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTII 271

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  K+ +A+ LL+ M+ + ++P   T+  L++G+C    V  A  +F+ M R+G  
Sbjct: 272 DGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQ 331

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V +Y+ LING C N  ++EA+ +  +M   G K            P   T N  I+G 
Sbjct: 332 PNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLK------------PNVVTYNALINGF 379

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK   + E  E+   +        V  FN+LI    K G  + A  L + +    +  +V
Sbjct: 380 CKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNV 439

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             YN LI    +EG +K+   L   ME NG   D+ T+N L+ +  +K
Sbjct: 440 STYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK 487



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 135/275 (49%), Gaps = 40/275 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N++TFN LI GFC + N+  A ++ ++M   G +PNV T ++LI GL   G ++  L L 
Sbjct: 298 NEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQ 357

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
            +M +GMG      KPNV  Y +LI+G CK +++ + +++  ++  +G     I  NTL+
Sbjct: 358 DKM-SGMG-----LKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLI 411

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K  ++ +A  L  +M+  G+ P + TY  L+ G+C  G V  A  L   M   G  
Sbjct: 412 DAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLK 471

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMIL-----------------NGF--------- 228
            D+ +Y++L++  CK     +A+ +  EM L                  GF         
Sbjct: 472 ADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEA 531

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
            ++ NEM    ++P   T +I  D + + G + ++
Sbjct: 532 NRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDI 566



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 12/197 (6%)

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
           P+L      G++ V  +++  M R+    +V ++ V+ING CK    ++A +V  +M   
Sbjct: 199 PMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAW 258

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
           GF             P   T N  IDG CK G + +   L   +           FN LI
Sbjct: 259 GFS------------PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILI 306

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G C+      A ++F ++  + L  +VV YN LI+ L   G++ +   L   M   G  
Sbjct: 307 DGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLK 366

Query: 347 LDVDTFNTLMISFLQKE 363
            +V T+N L+  F +K+
Sbjct: 367 PNVVTYNALINGFCKKK 383



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           R  N VT+N LIKGFC +G + +A++L+ +M   G  PN TT D L
Sbjct: 508 RRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 553


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 170/368 (46%), Gaps = 36/368 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLIKG+C    I DA +L+  + + GC P+  +  T++  L +   +     L ++
Sbjct: 302 VTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEK 361

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV    D   I  P+   Y +LI  L K    D       E +DKG + + +        
Sbjct: 362 MVQ---DSNLI--PDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHS 416

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+K ++ EA  L+  M  R  NP + TYT +++G+C +G+++ A  +   M + G  P+
Sbjct: 417 FCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPN 476

Query: 197 VFSYSVLINGYC---KNFNVEEAMNVSRE-----------MILNGFKKIFNEMKLCNVV- 241
             SY+ L+NG C   K+    E +NVS E           ++++GF++     + C++  
Sbjct: 477 TVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTR 536

Query: 242 --------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P     N+ I  LC+N  V+E  +         C + V  F ++I G C+ G
Sbjct: 537 EMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIG 596

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A  +   +   N   D V Y  L  ALGK+G++ +   L++ M   G      TF 
Sbjct: 597 DMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFR 656

Query: 354 TLMISFLQ 361
           +++  + Q
Sbjct: 657 SVIHRYCQ 664



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 164/353 (46%), Gaps = 43/353 (12%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +++ GFC  G I +A +++++M   GC+PN  +   L+ GL  +G    +L+  +E
Sbjct: 443 VTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGK---SLEA-RE 498

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M+N   +    + PN   YG ++ G  ++  + +  DL  EM +KG     +  N L   
Sbjct: 499 MINVSEEHW--WTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQS 556

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+  K+VEA + LE  + +G    +  +T +++G+C +G +  A+++ + M      PD
Sbjct: 557 LCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPD 616

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNG-------FKKIFNEM-------------- 235
             +Y+ L +   K   ++EA  +  +M+  G       F+ + +                
Sbjct: 617 AVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLD 676

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI- 294
           ++    P     N  I+ LC  G++ E  +L   +  +  +L     + L+  C K G+ 
Sbjct: 677 RMVKRKPFRTIYNHVIEKLCDFGNLEEAEKLLGKVLRTASKLDANTCHVLMESCLKKGVA 736

Query: 295 ---FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
              +++A ++F     +NL  D+     +   L  +G + + + L+L   E G
Sbjct: 737 LSAYKVACQMFR----RNLTPDLKLCEKVTKKLVLDGNLVEADKLMLRFVERG 785



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 153/352 (43%), Gaps = 29/352 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+   F  ++  +   G +R+A +++  M   G  PN++ C+T I  L +   +   L+ 
Sbjct: 229 LSPEAFGCVMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRF 288

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            + M V G+       KP++  Y SLI G C    ++   +L   +  KG   + +    
Sbjct: 289 LERMQVTGI-------KPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYT 341

Query: 137 ----LCKKTKLVEANRLLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
               LCK+ K+ +   L+E M+Q   L P   TY  L++     G  + A+A       K
Sbjct: 342 VMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDK 401

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           GF  D   YS +++ +C+   ++EA    + ++++ + +       CN  P+  T    +
Sbjct: 402 GFHIDKVGYSAIVHSFCQKGRMDEA----KSLVIDMYSRS------CN--PDVVTYTAIV 449

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           DG C+ G + E  ++   +    C+     + +L+ G C  G    A E+ N        
Sbjct: 450 DGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWT 509

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            + + Y +++H   +EG++ +   L   M E G        N L+ S  Q +
Sbjct: 510 PNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQ 561



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 140/321 (43%), Gaps = 51/321 (15%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++ V +++++  FC +G + +A  LV  M +  C P+V T   ++ G  R G ++   K+
Sbjct: 405 IDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKM 464

Query: 82  HQEM---------------VNGMGDFG--------------GIYKPNVFCYGSLIDGLCK 112
            Q+M               +NG+   G                + PN   YG ++ G  +
Sbjct: 465 LQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRR 524

Query: 113 DRLVDQTKDLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFT 164
           +  + +  DL  EM +KG     +  N L   LC+  K+VEA + LE  + +G    +  
Sbjct: 525 EGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVN 584

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           +T +++G+C +G +  A+++ + M      PD  +Y+ L +   K   ++EA  +  +M+
Sbjct: 585 FTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKML 644

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
             G              P   T    I   C+ G V +++ L     +   + F  I+N 
Sbjct: 645 SKGLD------------PTPVTFRSVIHRYCQWGRVDDMLNLLD--RMVKRKPFRTIYNH 690

Query: 285 LIRGCCKFGIFEIASELFNKL 305
           +I   C FG  E A +L  K+
Sbjct: 691 VIEKLCDFGNLEEAEKLLGKV 711



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 14/225 (6%)

Query: 140 KTKLVE-ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           KTKL + A R+L LM +RG+      +  ++  Y   GK+  A+ +   M + G  P++ 
Sbjct: 208 KTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSYSRAGKLRNALRVLTLMQKAGVEPNLS 267

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
             +  I    K   +E+A+     M + G K            P+  T N  I G C   
Sbjct: 268 ICNTTIYVLVKGCKLEKALRFLERMQVTGIK------------PDIVTYNSLIKGYCDLN 315

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL-SCKNLVADVVAY 317
            + + +EL   L    C      + +++   CK    E    L  K+    NL+ D V Y
Sbjct: 316 RIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTY 375

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N LIH L K G        L   E+ G  +D   ++ ++ SF QK
Sbjct: 376 NTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQK 420


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 172/383 (44%), Gaps = 42/383 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   + R   P N +T+N++I G    G++    +L  +M   G +PNV T + L+
Sbjct: 214 ALKVFDEMVDRGVAP-NQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLL 272

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK--PNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           +GL R G M+ T  L  EM +        Y   P+ F Y  L DGL +         LF 
Sbjct: 273 SGLCRAGRMDETRALMDEMTS--------YSMLPDGFTYSILFDGLTRTGDSRTMLSLFG 324

Query: 125 EMKDKG--INANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           E   KG  I A T       LCK  K+ +A ++LE+++  GL P    Y  L+NGYC V 
Sbjct: 325 ESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVR 384

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK------ 230
            +  A ++F+ M  +   PD  +Y+ LING CK   + EA ++  EM  +G         
Sbjct: 385 DLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFN 444

Query: 231 -----------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
                            + ++M+   +     +    +   CKNG + E + +   +   
Sbjct: 445 TLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHK 504

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
           +     +++NS+I    + G  E A  L  K+    + A +  YN+L+  L K  QI + 
Sbjct: 505 DVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEA 564

Query: 334 NYLLLSMEENGCALDVDTFNTLM 356
             L+ ++   G   DV ++NT++
Sbjct: 565 EELIYNLTNQGLRPDVVSYNTII 587



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 156/340 (45%), Gaps = 24/340 (7%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N L++     G   D       +   G RP+    +  +      G+++  L     M+ 
Sbjct: 127 NLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALA----MLR 182

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CK 139
            MG   G   P+ F Y  +I GL +         +F EM D+G+  N +          K
Sbjct: 183 RMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVK 242

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
              L    RL + M+Q G  P + TY  LL+G C  G+++   AL D M     +PD F+
Sbjct: 243 GGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFT 302

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           YS+L +G  +  +       SR M+      +F E     V+   +TC+I ++GLCK+G 
Sbjct: 303 YSILFDGLTRTGD-------SRTML-----SLFGESLKKGVIIGAYTCSILLNGLCKDGK 350

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           V +  ++   L  +       I+N+LI G C+    + A  +F ++  +++  D + YN 
Sbjct: 351 VAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNA 410

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           LI+ L K   I +   L++ ME++G    V+TFNTL+ ++
Sbjct: 411 LINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAY 450



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 171/362 (47%), Gaps = 31/362 (8%)

Query: 13  SFIRRCYR-----PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           + +RR  R     P +  ++N +I G    G   DA ++  +M   G  PN  T +T+I 
Sbjct: 179 AMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMID 238

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G  + G++    +L  +M+          KPNV  Y  L+ GLC+   +D+T+ L  EM 
Sbjct: 239 GHVKGGDLEAGFRLRDQMLQDG------RKPNVVTYNVLLSGLCRAGRMDETRALMDEMT 292

Query: 128 D-----KGINANTLLCKKTKLVEANRLLELM---MQRGLNPVIFTYTPLLNGYCLVGKVN 179
                  G   + L    T+  ++  +L L    +++G+    +T + LLNG C  GKV 
Sbjct: 293 SYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVA 352

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
            A  + + +   G +P    Y+ LINGYC+  +++ A +            IF +MK  +
Sbjct: 353 KAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFS------------IFEQMKSRH 400

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           + P+  T N  I+GLCK   + E  +L   +E S  +  VE FN+LI    + G  E   
Sbjct: 401 IRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCF 460

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + + +  K + ++V+++  ++ A  K G+I +   +L  M       +   +N+++ ++
Sbjct: 461 TVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAY 520

Query: 360 LQ 361
           ++
Sbjct: 521 IE 522



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 142/336 (42%), Gaps = 33/336 (9%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+LI G+C   +++ A  + ++M +   RP+  T + LI GL +   +     L  EM 
Sbjct: 373 YNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEME 432

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
               D      P+V  + +LID   +   +++   +  +M+DKGI +N +         C
Sbjct: 433 KSGVD------PSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFC 486

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  K+ EA  +L+ M+ + + P    Y  +++ Y   G    A  L + M   G    +F
Sbjct: 487 KNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIF 546

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y++L+ G CKN  ++EA     E+I N    + N+     + P+  + N  I   C  G
Sbjct: 547 TYNLLLKGLCKNSQIDEA----EELIYN----LTNQ----GLRPDVVSYNTIISACCNKG 594

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
                +EL   +   +    +  ++ L+      G       L+  +  KN+      Y 
Sbjct: 595 DTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYG 654

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
                  K   +KKE      M E G A D DT  T
Sbjct: 655 TRCENESKVASLKKE------MSEKGIAFD-DTERT 683



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 14/204 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N ++F S++K FC  G I +A  ++  M      PN    +++I     +G       L 
Sbjct: 474 NVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLV 533

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           ++M +      G+   ++F Y  L+ GLCK+  +D+ ++L   + ++G     ++ NT++
Sbjct: 534 EKMKSS-----GV-SASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTII 587

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C K     A  LL+ M +  + P + TY PLL+     G+V+    L+  M  K   
Sbjct: 588 SACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVE 647

Query: 195 PDVFSYSVLINGYCKNFNVEEAMN 218
           P    Y        K  ++++ M+
Sbjct: 648 PSSSIYGTRCENESKVASLKKEMS 671



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 25/197 (12%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + +   LL     VG+     A F  +   G  PD F+++  +       +++EA+ +
Sbjct: 121 PSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAM 180

Query: 220 SREM----------------ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDGL 254
            R M                ++ G           K+F+EM    V P   T N  IDG 
Sbjct: 181 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGH 240

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K G +     L   +     +  V  +N L+ G C+ G  +    L ++++  +++ D 
Sbjct: 241 VKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDG 300

Query: 315 VAYNILIHALGKEGQIK 331
             Y+IL   L + G  +
Sbjct: 301 FTYSILFDGLTRTGDSR 317



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 13/112 (11%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP + V++N++I   C +G+   A +L+++M  +  RP + T   L++ L   G ++   
Sbjct: 577 RP-DVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDME 635

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
            L+Q MV+         +P+   YG+  +   K         L  EM +KGI
Sbjct: 636 CLYQHMVHKN------VEPSSSIYGTRCENESK------VASLKKEMSEKGI 675


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 162/359 (45%), Gaps = 26/359 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   IR  + P + + F  LI G C  G ++DAS+  K+M   GC+PNV   + L+ GL 
Sbjct: 138 FDEMIRGGHHP-DRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLC 196

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
            +G +     L  EM +          P+V  Y +L+D +CK R V++   LF  M+  G
Sbjct: 197 SSGQLEQANTLFAEMKSHSCS------PDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAG 250

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
              N +        LC+  +L +A  +   M++ G  P  +TYT L++G C   KV  A 
Sbjct: 251 YVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQAR 310

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            LF+ M +    PD  +Y+ LI GYCK  +++EA  + REM                + P
Sbjct: 311 ELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGA-----------GLQP 359

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              T N  IDG CK G +    EL   +           +  LI G  +    + A E++
Sbjct: 360 TIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVY 419

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            ++  K  + D V+    +  L K G I +   +  +  ++G   + +TF  L  S ++
Sbjct: 420 KQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIK 478



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 158/348 (45%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T++S+IK    E    ++ +++++M   GC P+V   + ++ G  R+ NM    +++
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
           Q MV         YKP+   Y  LI GL K   +D++  +  EM  +G   +        
Sbjct: 69  QHMVESG------YKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLV 122

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K  ++  A+ L + M++ G +P    +  L+ G C  GKV  A   F  M + G  
Sbjct: 123 RALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQ 182

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V  Y+VL++G C +  +E+A              +F EMK  +  P+  T N  +D +
Sbjct: 183 PNVPVYNVLLHGLCSSGQLEQA------------NTLFAEMKSHSCSPDVVTYNTLLDAV 230

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK   V E  +LF  +  +     V  F++LI G C+ G  E A E+F  +       + 
Sbjct: 231 CKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNK 290

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             Y  LI  L +  ++ +   L   M +     D   +N+L+  + ++
Sbjct: 291 YTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKR 338



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 23/227 (10%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M  + +   +FTY+ ++       K   +  + + M   G  PDVF+++ ++ G+ ++ N
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 213 VEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFTCNI 249
           +E+A  V + M+ +G+K                       KI +EM +    P     + 
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            +  L K   V     LF  +          +F  LI G C+ G  + ASE F ++    
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +V  YN+L+H L   GQ+++ N L   M+ + C+ DV T+NTL+
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLL 227


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 165/339 (48%), Gaps = 27/339 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + KV+ A   F   I++ + P ++VT+ +LI G+C  G ++ A  L  +M   G  PNV 
Sbjct: 263 SGKVVEADKLFNEMIKKGFEP-DEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVV 321

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   L  GL ++G ++   +L  EM        G+ + N+  Y ++++GLCK   + Q  
Sbjct: 322 TYTALADGLCKSGELDTANELLHEMCRK-----GL-QLNISTYNTIVNGLCKAGNILQAV 375

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L  EMK+ G++ +T+          K  ++V+A  LL  M+ RGL P + T+  L+NG 
Sbjct: 376 KLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGL 435

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C+ GK+     L   M  KG MP+  +Y+ ++  YC   N+  +  + R M   G     
Sbjct: 436 CMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQG----- 490

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                  VVP++ T NI I G CK  ++ E   L   +      L    +N+LI+G  K 
Sbjct: 491 -------VVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKR 543

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
                A +LF ++  + LVA    YN+ +    +EG ++
Sbjct: 544 KKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNME 582



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 175/343 (51%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++ ++I G+C  G ++   QLVK+M   G +PN+ T  ++I  L ++G +    K+ +E
Sbjct: 146 VSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLRE 205

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+       G++ P+   Y +LIDG CK         LF EM+ + I  +++        
Sbjct: 206 MMKR-----GVF-PDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICG 259

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L    K+VEA++L   M+++G  P   TYT L++GYC +G++  A  L + M + G  P+
Sbjct: 260 LSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPN 319

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ L +G CK+  ++ A  +  EM   G +         N+     T N  ++GLCK
Sbjct: 320 VVTYTALADGLCKSGELDTANELLHEMCRKGLQ--------LNIS----TYNTIVNGLCK 367

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G++L+ ++L   ++ +        + +L+    K G    A EL  ++  + L   VV 
Sbjct: 368 AGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVT 427

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +N+L++ L   G+++    LL  M E G   +  T+N++M  +
Sbjct: 428 FNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQY 470



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 158/346 (45%), Gaps = 32/346 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N  ++N L+      G IR+A  L+ +M   GC P+V +  T+I G    G +   ++L
Sbjct: 108 WNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQL 167

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
            +EM        G+ KPN++ Y S+I  LCK   V + + +  EM  +G+  + ++    
Sbjct: 168 VKEM-----QLKGL-KPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTL 221

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               CK      A +L   M  R + P    ++ L+ G    GKV  A  LF+ M +KGF
Sbjct: 222 IDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGF 281

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF---NEMKLCNVVPETFTCNIF 250
            PD  +Y+ LI+GYCK               L   KK F   N+M    + P   T    
Sbjct: 282 EPDEVTYTALIDGYCK---------------LGEMKKAFFLHNQMVQIGLTPNVVTYTAL 326

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
            DGLCK+G +    EL   +     +L +  +N+++ G CK G    A +L  ++    L
Sbjct: 327 ADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGL 386

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             D + Y  L+ A  K G++ K   LL  M + G    V TFN LM
Sbjct: 387 HPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLM 432



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 148/340 (43%), Gaps = 28/340 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + + F++LI G    G + +A +L  +M   G  P+  T   LI G  + G M     LH
Sbjct: 249 DSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLH 308

Query: 83  QEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +MV  G+        PNV  Y +L DGLCK   +D   +L  EM  KG+  N       
Sbjct: 309 NQMVQIGL-------TPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTI 361

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK   +++A +L+E M + GL+P   TYT L++ Y   G++  A  L   M  +G 
Sbjct: 362 VNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGL 421

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P V +++VL+NG C +  +E+   + + M+  G            ++P   T N  +  
Sbjct: 422 QPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKG------------IMPNAATYNSIMKQ 469

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C   ++    E++  +           +N LI+G CK    + A  L  ++  K     
Sbjct: 470 YCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLT 529

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             +YN LI    K  ++ +   L   M   G     + +N
Sbjct: 530 ASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYN 569



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 127/280 (45%), Gaps = 45/280 (16%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T+N+++ G C  GNI  A +L+++M   G  P+  T  TL+    +TG M    +L
Sbjct: 353 LNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKAREL 412

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
            +EM+    D G   +P V  +  L++GLC                              
Sbjct: 413 LREML----DRG--LQPTVVTFNVLMNGLCMS---------------------------G 439

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           KL +  RLL+ M+++G+ P   TY  ++  YC+   + ++  ++  M  +G +PD  +Y+
Sbjct: 440 KLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYN 499

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           +LI G+CK  N++EA  + +EM+   F          N+   ++  N  I G  K   +L
Sbjct: 500 ILIKGHCKARNMKEAWFLHKEMVEKRF----------NLTASSY--NALIKGFFKRKKLL 547

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           E  +LF  +         EI+N  +    + G  E   EL
Sbjct: 548 EARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLEL 587



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 63/140 (45%)

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
           S+  +L    K+F+E     V   T + NI ++ L + G + E   L   +E   C   V
Sbjct: 86  SKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDV 145

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + ++I G C  G  +   +L  ++  K L  ++  Y+ +I  L K G++ +   +L  
Sbjct: 146 VSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLRE 205

Query: 340 MEENGCALDVDTFNTLMISF 359
           M + G   D   + TL+  F
Sbjct: 206 MMKRGVFPDHVIYTTLIDGF 225


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 168/338 (49%), Gaps = 22/338 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V + ++I   C +G + +A+ L+ +M   GC  +V T D ++ G+   G +    +L 
Sbjct: 209 DAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARL- 267

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-NTLL---C 138
              V+ M   G +  P V  YG L+ GLC+ R  D+ + +   + +  +   NT++    
Sbjct: 268 ---VDRMMTKGCM--PGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCL 322

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
            + KL EA  L E M  +G  P   TY+ L++G C +G++  A+ L   M +KGF P+V 
Sbjct: 323 AEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVV 382

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y+++++ +CKN             + +  + +  EM    +   +   N  I  LCK+G
Sbjct: 383 TYTIVLHSFCKNG------------MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDG 430

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + E M L   +    C   +  +N++I   C     E A  +F  L  + +VA+ + YN
Sbjct: 431 RMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYN 490

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +IHAL ++G+ +    L   M  +GC+LDV ++N L+
Sbjct: 491 TIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLI 528



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 158/331 (47%), Gaps = 37/331 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V FN++I G   EG + +A++L + M   GC+P+  T   L+ GL + G +   ++L
Sbjct: 309 LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRL 368

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
            +EM          + PNV  Y  ++   CK+ + D T+ L  EM  KG+  N+      
Sbjct: 369 LREMEKKG------FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGM 422

Query: 136 --LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++ EA  L++ M  +G NP I +Y  ++   C   ++  A  +F+++  +G 
Sbjct: 423 IYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGV 482

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMIL----------NGFKK------------- 230
           + +  +Y+ +I+   ++   ++A+ +++EMIL          NG  K             
Sbjct: 483 VANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLV 542

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +  EM    + P   + NI I  LCK   V + +EL   +        +  +N+LI G C
Sbjct: 543 LLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLC 602

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           K G    A  L  KL  +N+  D++ YNILI
Sbjct: 603 KMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 148/346 (42%), Gaps = 35/346 (10%)

Query: 45  QLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYG 104
           QL ++   FG +P+  + + +++ L R       L L++ MV+          P  F +G
Sbjct: 128 QLPRR---FGVQPSFRSYNVVLSVLARADCHADALALYRRMVHR-----DRVPPTTFTFG 179

Query: 105 SLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQR 156
                LC+    D+   L   M   G   + +L        C +  + EA  LL  M+  
Sbjct: 180 VAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLM 239

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G    + T+  ++ G C +G+V  A  L D M  KG MP V +Y  L+ G C+    +EA
Sbjct: 240 GCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEA 299

Query: 217 ---------MNVS----------REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
                    +NV            E  L    +++  M L    P+  T +I + GLCK 
Sbjct: 300 RAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKL 359

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G +   + L   +E       V  +  ++   CK G+++    L  ++S K L  +   Y
Sbjct: 360 GRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGY 419

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           N +I+AL K+G++ +   L+  M   GC  D+ ++NT++      E
Sbjct: 420 NGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNE 465



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 26/290 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+  ++  FC  G   D   L+++M+  G   N    + +I  L + G M+  + L 
Sbjct: 380 NVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLI 439

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QEM +   +      P++  Y ++I  LC +  +++ + +F  + ++G+ AN +      
Sbjct: 440 QEMRSQGCN------PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 493

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L +  +  +A RL + M+  G +  + +Y  L+   C  G V+ ++ L + MA KG  
Sbjct: 494 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 553

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  SY++LI+  CK   V +A+ +S++M+  G              P+  T N  I+GL
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGL------------APDIVTYNTLINGL 601

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
           CK G +   + L   L   N    +  +N LI   CK  + + A+ L N+
Sbjct: 602 CKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNR 651



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 152/386 (39%), Gaps = 76/386 (19%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  +   + R   P    TF    +  C  G   +A  L++ MA  GC P+        
Sbjct: 158 ALALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAV------ 211

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
                         L+Q +++ + D GG+ +        L+ G   D  V+   D+   M
Sbjct: 212 --------------LYQTVIHALCDQGGVTEAATLLNEMLLMGCAAD--VNTFDDVVRGM 255

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV----------- 175
                      C   ++ EA RL++ MM +G  P + TY  LL G C V           
Sbjct: 256 -----------CGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLG 304

Query: 176 --------------------GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
                               GK+  A  L+++M  KG  PD  +YS+L++G CK   +  
Sbjct: 305 RVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGS 364

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A+ + REM   GF             P   T  I +   CKNG   +   L   +     
Sbjct: 365 AVRLLREMEKKGF------------APNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 412

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
            L  + +N +I   CK G  + A  L  ++  +    D+ +YN +I+ L    Q+++  +
Sbjct: 413 TLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEH 472

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQ 361
           +  ++ E G   +  T+NT++ + L+
Sbjct: 473 MFENLLEEGVVANGITYNTIIHALLR 498



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 49/231 (21%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV---------------------- 59
           LN   +N +I   C +G + +A  L+++M + GC P++                      
Sbjct: 414 LNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHM 473

Query: 60  -------------TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSL 106
                         T +T+I  L R G     ++L +EM+            +V  Y  L
Sbjct: 474 FENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSL------DVVSYNGL 527

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGL 158
           I  +CKD  VD++  L  EM +KGI  N +        LCK+ ++ +A  L + M+ +GL
Sbjct: 528 IKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGL 587

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            P I TY  L+NG C +G ++ A+ L + +  +   PD+ +Y++LI+ +CK
Sbjct: 588 APDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK 638


>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
 gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
          Length = 319

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 133/243 (54%), Gaps = 18/243 (7%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCKK K+ EA  +++ M+++G+ P   TY+ L+NGY L  +V  A  +F++M  +G +PD
Sbjct: 20  LCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKVFNAMITRGCIPD 79

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK----IFNEMKLC 238
           V SY++LING CK   ++EA  +  EM              +L GF K    +F +M   
Sbjct: 80  VLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGGFWKQKIQLFKDMHAQ 139

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P+  T +IF+ GL K G++ + +ELF  ++ +     + I+N LI   CK G  E A
Sbjct: 140 GCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNILIDAMCKSGKLEDA 199

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            ELF KL  K L+ DV ++  +I  L +EG + +       ME +GC  D  ++N ++  
Sbjct: 200 RELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVRG 259

Query: 359 FLQ 361
           FLQ
Sbjct: 260 FLQ 262



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 142/339 (41%), Gaps = 51/339 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN L+   C +G I +A  +VK M   G  PN  T  +L+ G      +    K+   
Sbjct: 11  VTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKVFNA 70

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M+      G I  P+V  Y  LI+G CK + +D+ K +F EM                  
Sbjct: 71  MITR----GCI--PDVLSYNILINGCCKAQRIDEAKQIFDEMS----------------- 107

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                      RGL P   TY  LL G+         I LF  M  +G  PD+ +YS+ +
Sbjct: 108 ----------FRGLIPNTATYNTLLGGFW-----KQKIQLFKDMHAQGCSPDLVTYSIFL 152

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           +G  K   +++A+ + REM  N               P+    NI ID +CK+G + +  
Sbjct: 153 HGLSKQGYLDQALELFREMQNNYLN------------PDLVIYNILIDAMCKSGKLEDAR 200

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           ELF  L +      V  + S+I G C+ G+ + A + F ++       D  +YN+++   
Sbjct: 201 ELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVRGF 260

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +     +   L   M + G + D  T  TL    L K+
Sbjct: 261 LQNNGASRAEQLFQEMFDRGFSADALT-RTLAADLLSKD 298



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 113/235 (48%), Gaps = 20/235 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++V  A   F + I R   P + +++N LI G C    I +A Q+  +M+  G  PN  T
Sbjct: 59  NRVFEARKVFNAMITRGCIP-DVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTAT 117

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TL+ G  +   + L   +H +  +          P++  Y   + GL K   +DQ  +
Sbjct: 118 YNTLLGGFWKQ-KIQLFKDMHAQGCS----------PDLVTYSIFLHGLSKQGYLDQALE 166

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF EM++  +N + +        +CK  KL +A  L   +  +GL P + ++T +++G C
Sbjct: 167 LFREMQNNYLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLC 226

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
             G ++ A   F  M R G  PD  SY+V++ G+ +N     A  + +EM   GF
Sbjct: 227 REGLLDEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGF 281


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 169/380 (44%), Gaps = 73/380 (19%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           +R   P N+VT+N+L+ GF  EG +  A QL+ +M TFG  PN  T + LI G    GN 
Sbjct: 291 KRMIHP-NEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNF 349

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
              LK+   M+   G  G         YG L+DGLCK+   D  +  +M MK  G+    
Sbjct: 350 KEALKMFH-MMEAKGLIG-----TEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGR 403

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA------ 181
           +        LCK   L EA  +L  M + G++P I TY+ L+NG+C VG++  A      
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCR 463

Query: 182 -----------------------------IALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
                                        I ++++M  +G  PD F+++VL+   CK   
Sbjct: 464 IYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGK 523

Query: 213 VEEAMN--------------VSREMILNGFK---------KIFNEMKLCNVVPETFTCNI 249
           V EA                VS + ++NG+           +F+EM      P  FT   
Sbjct: 524 VAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGS 583

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            + GLCK GH++   +   +L+     +   + N+LI   CK G  + A  LF ++  ++
Sbjct: 584 LLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRS 643

Query: 310 LVADVVAYNILIHALGKEGQ 329
           ++ D   Y  LI  L ++G+
Sbjct: 644 ILPDSFTYTSLISGLCRKGK 663



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 157/343 (45%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            TFN LI   C EG+ + +S L++KM   G  P + T +T++    + G     ++L   
Sbjct: 194 ATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 253

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL-- 137
           M     +  G+   +V  Y  LI  LC+     +   L  +M+ + I+ N     TLL  
Sbjct: 254 M-----NLKGV-NADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNG 307

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
              + K++ A +LL  M+  GL+P   T+  L++G+   G    A+ +F  M  KG +  
Sbjct: 308 FSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGT 367

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY VL++G CKN   + A          GF   +  MK   V     T    IDGLCK
Sbjct: 368 EVSYGVLLDGLCKNAEFDLA---------RGF---YMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG + E + +   +     +  +  +++LI G C+ G  + A E+  ++    L  + + 
Sbjct: 416 NGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGII 475

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y+ LI+   + G +K+   +  +M   G   D  TFN L+ S 
Sbjct: 476 YSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSL 518



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 161/372 (43%), Gaps = 40/372 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+  +I G C  G + +A  ++ +M+  G  P++ T   LI G  R G     LK  +E
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGR----LKTAKE 459

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TL 136
           +V  +   G    PN   Y +LI   C+   + +T  ++  M  +G   +        T 
Sbjct: 460 IVCRIYRVG--LSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTS 517

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+ EA   +  M   G+ P   ++  L+NGY   G+   A ++FD M + G  P 
Sbjct: 518 LCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPT 577

Query: 197 VFSYSVLINGYCKN-------------FNVEEAMN----------VSREMILNGFKKIFN 233
            F+Y  L+ G CK               NV  A++          + +   L+    +F 
Sbjct: 578 FFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFG 637

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE--IFNSLIRGCCK 291
           EM   +++P++FT    I GLC+ G  + +  LF     +   L     ++   + G  K
Sbjct: 638 EMVQRSILPDSFTYTSLISGLCRKGKTV-IAILFAKEAEARGNLVPNKVMYTCFVDGMFK 696

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G ++       ++    L  DVV  N +I    + G+I+K + LL  M       ++ T
Sbjct: 697 AGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTT 756

Query: 352 FNTLMISFLQKE 363
           +N L+  + +++
Sbjct: 757 YNILLHGYSKRK 768



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 155/352 (44%), Gaps = 30/352 (8%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           L A   F    +  + P    T+ SL+KG C  G++  A + +K +       +   C+T
Sbjct: 560 LKAFSVFDEMTKVGHHP-TFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNT 618

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           LIT + ++GN++  + L  EMV           P+ F Y SLI GLC+            
Sbjct: 619 LITAMCKSGNLDKAVSLFGEMVQRS------ILPDSFTYTSLISGLCRKGKTVIAILFAK 672

Query: 125 EMKDKG---INANTLLCKKTKLVEANRL------LELMMQRGLNPVIFTYTPLLNGYCLV 175
           E + +G    N     C    + +A +        + M + GL   + T   +++GY  +
Sbjct: 673 EAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRM 732

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           GK+     L   M  +   P++ +Y++L++GY K  +V  +  + R MIL+G        
Sbjct: 733 GKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSG-------- 784

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEV-MELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
               ++P+  TC   I G+C++ ++LE+ +++         E+    FN LI  CC  G 
Sbjct: 785 ----ILPDKLTCYSIILGICES-NMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGE 839

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
              A ++ N ++   +  D    + ++  L +  + ++   +L  M + G +
Sbjct: 840 INWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGIS 891



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 148/349 (42%), Gaps = 65/349 (18%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            VT N++I G+   G I     L+ +M      PN+TT + L+ G  +  +++ +  L++ 
Sbjct: 720  VTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRS 779

Query: 85   MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL----------------------------- 115
            M+       GI    + CY S+I G+C+  +                             
Sbjct: 780  MI-----LSGILPDKLTCY-SIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISK 833

Query: 116  ------VDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPV 161
                  ++   D+   M   GI+ +        ++L +  +  E+  +L  M ++G++P 
Sbjct: 834  CCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPE 893

Query: 162  IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
               Y  LLNG C VG +  A  + + M      P   + S ++    K    +EA  + R
Sbjct: 894  SRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLR 953

Query: 222  EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
             M+         +MKL   VP   +    +   CKNG+V E +EL   + +SNC L +++
Sbjct: 954  SML---------KMKL---VPTIASFTTLMHLFCKNGNVTEALEL--RVVMSNCGLKLDL 999

Query: 282  --FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
              +N LI G C  G   IA ELF ++     +A+V  Y  L+  +  +G
Sbjct: 1000 VSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGGILSQG 1048



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 14/201 (6%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           NP +F    L+  Y   G +  ++ +F  M   GF P V++ + ++    K+       +
Sbjct: 122 NPSVFDI--LIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWS 179

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
             +EM+         + K+C   P+  T NI I+ LC  G   +   L   +E S     
Sbjct: 180 FLKEML---------KRKIC---PDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPT 227

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+++   CK G F+ A EL + ++ K + ADV  YN+LIH L +  +  K   LL 
Sbjct: 228 IVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLR 287

Query: 339 SMEENGCALDVDTFNTLMISF 359
            M +     +  T+NTL+  F
Sbjct: 288 DMRKRMIHPNEVTYNTLLNGF 308



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 156/391 (39%), Gaps = 45/391 (11%)

Query: 7    ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTL 65
            A+  FG  ++R   P +  T+ SLI G C +G    A    K+    G   PN       
Sbjct: 632  AVSLFGEMVQRSILP-DSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCF 690

Query: 66   ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            + G+ + G         Q+M     D  G+ + +V    ++IDG  +   +++T DL  E
Sbjct: 691  VDGMFKAGQWKAGFYFRQQM-----DKLGLTR-DVVTTNAMIDGYSRMGKIEKTHDLLFE 744

Query: 126  M--KDKGINANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
            M  +++G N  T         K+  +  +  L   M+  G+ P   T   ++ G C    
Sbjct: 745  MGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESNM 804

Query: 178  VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------- 228
            + + + +  +   +G   D  ++++LI+  C N  +  A ++   M   G          
Sbjct: 805  LEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDA 864

Query: 229  --------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV---LEVMELFPTLE 271
                          + + +EM    + PE+      ++GLC+ G +     V E     +
Sbjct: 865  IVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHK 924

Query: 272  ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            I  C   V   ++++R   K G  + AS L   +    LV  + ++  L+H   K G + 
Sbjct: 925  I--CPPNVAE-SAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVT 981

Query: 332  KENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +   L + M   G  LD+ ++N L+     K
Sbjct: 982  EALELRVVMSNCGLKLDLVSYNVLITGLCAK 1012



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 10/139 (7%)

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS--NCELFV--EIFN 283
           F  +    +LCN  P  F  +I I    + G + + +E+F  + +   N  ++    I  
Sbjct: 109 FGALMATYRLCNSNPSVF--DILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILG 166

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           S+++ C    ++    E+  +  C     DV  +NILI+ L  EG  KK +YL+  ME++
Sbjct: 167 SIVKSCEDVSVWSFLKEMLKRKIC----PDVATFNILINVLCAEGSFKKSSYLMQKMEKS 222

Query: 344 GCALDVDTFNTLMISFLQK 362
           G A  + T+NT++  + +K
Sbjct: 223 GYAPTIVTYNTVLHWYCKK 241


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 177/369 (47%), Gaps = 37/369 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N  T N ++  +C       A  ++ +M      P+V T + LI    R G+++  + L
Sbjct: 155 VNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
               V+ M + G   KP +  + S++ GLCK R  D+ K++F  M    +  +       
Sbjct: 215 ----VDSMANKG--LKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNIL 268

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+  ++ EA +  + M QRG+ P + +++ L+  +   GK++ A A    M   G 
Sbjct: 269 IGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGL 328

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGF---------KK 230
           +PD   Y+++I G+C+  ++ EA+ V  EM+              LNG          ++
Sbjct: 329 VPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEE 388

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           + NEMK   V P+  T    I G C++G+  + ++LF TL        V  +NSLI G C
Sbjct: 389 LLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMC 448

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           + G    A+EL++ +  + +  + V Y+ILI +  ++GQ+++    L  M   G   ++ 
Sbjct: 449 RKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIM 508

Query: 351 TFNTLMISF 359
           T+N+++  +
Sbjct: 509 TYNSIIKGY 517



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 163/345 (47%), Gaps = 26/345 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +FN LI GFC  G + +A +  K+M   G  P+V +   LI      G M+      +EM
Sbjct: 264 SFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREM 323

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
             G+G       P+   Y  +I G C+   + +   +  EM   G     +  NTLL   
Sbjct: 324 -KGLG-----LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGL 377

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ +L++A  LL  M +RG+ P + T+T L++GYC  G    A+ LFD++  +   PDV
Sbjct: 378 CKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDV 437

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LI+G C+  ++ +A             +++++M    + P   T +I ID  C+ 
Sbjct: 438 VAYNSLIDGMCRKGDLAKA------------NELWDDMHAREIFPNHVTYSILIDSHCEK 485

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V E       +        +  +NS+I+G C+ G  +   +   K+   N++ D++ +
Sbjct: 486 GQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITF 545

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N LIH   KE  +     +   ME+     D  T+N ++  F ++
Sbjct: 546 NTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQ 590



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 142/297 (47%), Gaps = 26/297 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+ G C +  + DA +L+ +M   G  P++ T  TLI G  R GN    L+L   
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDT 427

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           +++         +P+V  Y SLIDG+C+   + +  +L+ +M  + I  N +        
Sbjct: 428 LLHQR------LRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDS 481

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+K ++ EA   L+ M+ +G  P I TY  ++ GYC  G V         M +   +PD
Sbjct: 482 HCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPD 541

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +++ LI+GY K  N+  A NV            FN M+   V P+  T N+ I+G  +
Sbjct: 542 LITFNTLIHGYIKEENMHGAFNV------------FNIMEKEMVQPDAVTYNMIINGFSE 589

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            G++ E   +F  +  S  E     + SLI G    G  + A +L +++  +    D
Sbjct: 590 QGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 18/235 (7%)

Query: 128 DKGINANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           D  +NA TL       CK  +  +A+ ++  M +R + P + T+  L++     G V+ A
Sbjct: 152 DSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAA 211

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           IAL DSMA KG  P + +++ ++ G CK+   ++A            K++F  M  C+V 
Sbjct: 212 IALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKA------------KEVFRAMDQCSVA 259

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+  + NI I G C+ G V E M+ +  ++       V  F+ LI      G  + A+  
Sbjct: 260 PDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAY 319

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             ++    LV D V Y ++I    + G + +   +   M   GC  DV T+NTL+
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLL 374



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 15/230 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F + + +  RP + V +NSLI G C +G++  A++L   M      PN  T   LI
Sbjct: 421 ALQLFDTLLHQRLRP-DVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILI 479

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
                 G +        EMV+  G+      PN+  Y S+I G C+   V + +    +M
Sbjct: 480 DSHCEKGQVEEAFGFLDEMVS-KGNL-----PNIMTYNSIIKGYCRSGNVKKGQQFLQKM 533

Query: 127 KDKGI-----NANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
               I       NTL+    K+  +  A  +  +M +  + P   TY  ++NG+   G +
Sbjct: 534 MQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNM 593

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
             A  +F  M   G  PD ++Y  LING+    N +EA  +  EM+  GF
Sbjct: 594 EEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGF 643



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 14/182 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT++ LI   C +G + +A   + +M + G  PN+ T +++I G  R+GN+    +  
Sbjct: 471 NHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFL 530

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           Q+M+           P++  + +LI G  K+  +    ++F  M+ + +  + +      
Sbjct: 531 QKMMQDN------ILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMII 584

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               ++  + EA R+ + M   G+ P  +TY  L+NG+   G    A  L D M  +GF 
Sbjct: 585 NGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFA 644

Query: 195 PD 196
           PD
Sbjct: 645 PD 646



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 42/84 (50%)

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           S+ E+     N ++   CK   F+ A  + +++  + +  DVV +N+LI A  + G +  
Sbjct: 151 SDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDA 210

Query: 333 ENYLLLSMEENGCALDVDTFNTLM 356
              L+ SM   G    + TFN+++
Sbjct: 211 AIALVDSMANKGLKPGIVTFNSVL 234


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 169/381 (44%), Gaps = 38/381 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   +     P N +T+N++I G    G++    +L  +M   G +PNV T + L+
Sbjct: 213 ALKVFDEMVDMGVAP-NRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLL 271

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +GL RTG M+ T  L  EM +          P+ F Y  L DGL +         LF E 
Sbjct: 272 SGLCRTGRMDETRALMDEMASHS------MLPDGFTYSILFDGLTRTGESQTMLSLFAES 325

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             KG+             LCK  K+ +A ++ E+++  GL P    Y  L+NGYC V  +
Sbjct: 326 LKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDL 385

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------- 230
             A  +F+ M  +   PD  +Y+ LING CK   V +A ++  EM  +G           
Sbjct: 386 RGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 445

Query: 231 ---------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                          + ++M+   +  +  +    +   CKNG + E + +   +   + 
Sbjct: 446 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 505

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
               +++NS+I    + G  E A  L  K+    + A +V YN+L+  L +  QI +   
Sbjct: 506 APNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE 565

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           L+ ++   G   DV ++NT++
Sbjct: 566 LIYTLRNQGLRPDVVSYNTII 586



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 178/378 (47%), Gaps = 37/378 (9%)

Query: 3   KVLGALMAFG------SFIRRCYR-----PLNDVTFNSLIKGFCMEGNIRDASQLVKKMA 51
           KV+ A +A G      + +RR  R     P +  ++N +I G    G   DA ++  +M 
Sbjct: 162 KVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMV 221

Query: 52  TFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC 111
             G  PN  T +T+I G  + G++    +L  +M++         KPNV  Y  L+ GLC
Sbjct: 222 DMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGP------KPNVVTYNVLLSGLC 275

Query: 112 KDRLVDQTKDLFMEMKDK-----GINANTLLCKKTKLVEANRLLELM---MQRGLNPVIF 163
           +   +D+T+ L  EM        G   + L    T+  E+  +L L    +++G+    +
Sbjct: 276 RTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAY 335

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           T + LLNG C  GKV  A  +F+ +   G +P    Y+ LINGYC+  +           
Sbjct: 336 TCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRD----------- 384

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
            L G   IF +MK  ++ P+  T N  I+GLCK   V +  +L   +E S  +  VE FN
Sbjct: 385 -LRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFN 443

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LI      G  E    + + +  K + +DV+++  ++ A  K G+I +   +L  M   
Sbjct: 444 TLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYK 503

Query: 344 GCALDVDTFNTLMISFLQ 361
             A +   +N+++ ++++
Sbjct: 504 DVAPNAQVYNSIIDAYIE 521



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 156/340 (45%), Gaps = 24/340 (7%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N L++     G   D       +   G RP+    + ++      G++++ L     M+ 
Sbjct: 126 NLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA----MLR 181

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CK 139
            MG   G   P+ F Y  +I GL +         +F EM D G+  N +          K
Sbjct: 182 RMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVK 241

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
              L    RL + M+  G  P + TY  LL+G C  G+++   AL D MA    +PD F+
Sbjct: 242 GGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFT 301

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           YS+L +G  +    +  +++  E +  G            V+   +TC+I ++GLCK+G 
Sbjct: 302 YSILFDGLTRTGESQTMLSLFAESLKKG------------VMLGAYTCSILLNGLCKDGK 349

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           V +  ++F  L  +       I+N+LI G C+      A  +F ++  +++  D + YN 
Sbjct: 350 VAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNA 409

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           LI+ L K   + K   L++ ME++G    V+TFNTL+ ++
Sbjct: 410 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAY 449



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 151/358 (42%), Gaps = 37/358 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L   T + L+ G C +G +  A Q+ + +   G  P     +TLI G  +  ++     +
Sbjct: 332 LGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCI 391

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL 136
            ++M +         +P+   Y +LI+GLCK  +V + +DL MEM+  G++      NTL
Sbjct: 392 FEQMKSRH------IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 445

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +       +L +   +L  M Q+G+   + ++  ++  +C  GK+  A+A+ D M  K  
Sbjct: 446 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 505

Query: 194 MPDVFSYSVLINGYCKNFNVEEAM--------------NVSREMILNGF---------KK 230
            P+   Y+ +I+ Y ++ + E+A+               V+  ++L G          ++
Sbjct: 506 APNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE 565

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +   ++   + P+  + N  I   C  G   + +EL   +        +   ++L+    
Sbjct: 566 LIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALA 625

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             G       L+ ++  KN+      Y I++ A  +     K   L   M E G A D
Sbjct: 626 SAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 116/291 (39%), Gaps = 52/291 (17%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GA   F     R  RP + +T+N+LI G C    +  A  LV +M   G  P+V T +TL
Sbjct: 387 GAFCIFEQMKSRHIRP-DHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 445

Query: 66  ITGLRRTGNMNLTLKLHQEMV-----NGMGDFGGIYK----------------------- 97
           I      G +     +  +M      + +  FG + K                       
Sbjct: 446 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 505

Query: 98  -PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
            PN   Y S+ID   +    +Q   L  +MK+ G++A+ +        LC+ +++ EA  
Sbjct: 506 APNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE 565

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L+  +  +GL P + +Y  +++  C  G  + A+ L   M + G  P + +   L++   
Sbjct: 566 LIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALA 625

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL--CKN 257
               V +             + ++ +M   NV P +    I +D    C+N
Sbjct: 626 SAGRVHD------------MECLYQQMLHKNVEPSSSIYGIMVDAYVRCEN 664



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 25/195 (12%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + +   LL     VG+     A F  +   G  PD F+++ ++       +++ A+ +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 220 SREM----------------ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDGL 254
            R M                ++ G           K+F+EM    V P   T N  IDG 
Sbjct: 180 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGH 239

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K G +     L   +     +  V  +N L+ G C+ G  +    L ++++  +++ D 
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDG 299

Query: 315 VAYNILIHALGKEGQ 329
             Y+IL   L + G+
Sbjct: 300 FTYSILFDGLTRTGE 314



 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           ++C+ +P   +CN+ ++ L   G   +V   F  L  +        +N +++ C   G  
Sbjct: 114 EVCSPLPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDL 173

Query: 296 EIASELFNKL--SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           ++A  +  ++  S      D  +YN++I  L + G+      +   M + G A +  T+N
Sbjct: 174 DVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYN 233

Query: 354 TLM 356
           T++
Sbjct: 234 TMI 236


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 168/363 (46%), Gaps = 54/363 (14%)

Query: 3   KVLGALMAFGSF---------IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF 53
           KVL  LM    F         I  C  P +   FN L+  FC EG+IR A  +   +  +
Sbjct: 110 KVLEHLMKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKW 169

Query: 54  GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
           G RP+V + +TL+ G  R G+++   +L   M        G+ +P+V+ Y  LI+GLCK+
Sbjct: 170 GLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAM-----HASGV-QPDVYTYSVLINGLCKE 223

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
                                      +K+ +AN L + M+ +GL P   T+T L++G+C
Sbjct: 224 ---------------------------SKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 256

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G+V++A+ ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM + G K    
Sbjct: 257 KNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLK---- 312

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+  +    IDG CK G +    E    +   N  L    + +LI G C+ G
Sbjct: 313 --------PDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEG 364

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A ++  ++    L  D   Y ++I+   K+G +   + LL  M+ +G    V T+N
Sbjct: 365 RSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYN 424

Query: 354 TLM 356
            LM
Sbjct: 425 VLM 427



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 155/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 73  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFYKEIL 132

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+   CK+  +     +F  +   G+       NTL+    
Sbjct: 133 ECG------YPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYI 186

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 187 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGV 246

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM V ++M+              ++ P+  T N  I GLCK G
Sbjct: 247 TFTTLIDGHCKNGRVDLAMEVYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 294

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  E A E   ++  +N+  D VAY 
Sbjct: 295 DLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYT 354

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 355 ALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKK 398



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 244 NGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGD----LKQA 299

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           Q++++ M   G   KP+   Y +LIDG CK+  ++   +    M  + I  + +      
Sbjct: 300 QDLIDEMRMKG--LKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALI 357

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + ++A ++L  M+  GL P   TYT ++N +C  G V     L   M R G +
Sbjct: 358 SGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHV 417

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 418 PSVVTYNVLMNG 429


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 26/342 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +FN LI GFC  G + +A +  K+M      P+V +   LI    R G M+   +  +EM
Sbjct: 266 SFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREM 325

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
                +FG +  P+   Y  +I G C+  L+ +   +  EM   G     +  NTLL   
Sbjct: 326 R----EFGLM--PDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGL 379

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ +L +A  LL  M +RG+ P + T+T L++GYC  G +  A+  FD+++ +   PD+
Sbjct: 380 CKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDI 439

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LI+G C+  ++ +A             +++++M    + P   T +I ID  C+ 
Sbjct: 440 VTYNTLIDGMCRQGDLGKA------------NELWDDMHSREIFPNHVTYSILIDSHCEK 487

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V         +        +  +NS+I+G C+ G      +   K+    ++ D++ Y
Sbjct: 488 GQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITY 547

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N LIH   KEG++ +   LL  ME      D  T+N ++  F
Sbjct: 548 NTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGF 589



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 179/369 (48%), Gaps = 31/369 (8%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V  A+    S + +  +P   VT+NS++KG    G    A ++ + M   G  P+V + +
Sbjct: 210 VEAAMALIDSMVSKGIKP-GLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFN 268

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            LI G  R G +   L+ ++EM       G    P+V  +  LI    +   +D   +  
Sbjct: 269 MLIGGFCRAGELEEALRFYKEMR------GRRVTPDVVSFSCLIGLFTRRGEMDHAAEYL 322

Query: 124 MEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EM++ G+  + ++        C+   ++EA R+ + M+  G  P + TY  LLNG C  
Sbjct: 323 REMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKE 382

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
            +++ A  L + M  +G  PD+ +++ LI+GYC++ N+E+A+            + F+ +
Sbjct: 383 RRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKAL------------QFFDTI 430

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE--IFNSLIRGCCKFG 293
               + P+  T N  IDG+C+ G + +  EL+   ++ + E+F     ++ LI   C+ G
Sbjct: 431 SDQRLRPDIVTYNTLIDGMCRQGDLGKANELWD--DMHSREIFPNHVTYSILIDSHCEKG 488

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A    +++  K +V +++ YN +I    + G + K    L  M  +    D+ T+N
Sbjct: 489 QVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYN 548

Query: 354 TLMISFLQK 362
           TL+  ++++
Sbjct: 549 TLIHGYVKE 557



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 161/337 (47%), Gaps = 32/337 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL---RRTGNMNLTL 79
           + V +  +I GFC  G + +A ++  +M  FGC P+V T +TL+ GL   RR       L
Sbjct: 333 DGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERR-------L 385

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----N 134
              +E++N M + G    P++  + +LI G C+D  +++    F  + D+ +       N
Sbjct: 386 SDAEELLNEMKERG--VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYN 443

Query: 135 TL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           TL   +C++  L +AN L + M  R + P   TY+ L++ +C  G+V+ A A  D M  K
Sbjct: 444 TLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNK 503

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G +P++ +Y+ +I GYC++ NV +             ++   +M+   V+P+  T N  I
Sbjct: 504 GIVPNIMTYNSIIKGYCRSGNVSKG------------QQFLPKMRHDKVMPDLITYNTLI 551

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
            G  K G + E   L   +E  N +     +N +I G    G  + A  ++ K+  + + 
Sbjct: 552 HGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIE 611

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            D   Y  +I+     G  KK   L   M + G A D
Sbjct: 612 PDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 159/349 (45%), Gaps = 26/349 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N  T N ++  +C      +   ++ +M      P+V T + ++    R G++   + L
Sbjct: 157 VNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMAL 216

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
              MV+      GI KP +  Y S++ GL ++   D+ +++F  M   G+  +       
Sbjct: 217 IDSMVSK-----GI-KPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNML 270

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+  +L EA R  + M  R + P + +++ L+  +   G+++ A      M   G 
Sbjct: 271 IGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGL 330

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           MPD   Y+++I G+C+   + EA+ V  EM+  G             +P+  T N  ++G
Sbjct: 331 MPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFG------------CLPDVVTYNTLLNG 378

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK   + +  EL   ++       +  F +LI G C+ G  E A + F+ +S + L  D
Sbjct: 379 LCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPD 438

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +V YN LI  + ++G + K N L   M       +  T++ L+ S  +K
Sbjct: 439 IVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEK 487



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 15/230 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F +   +  RP + VT+N+LI G C +G++  A++L   M +    PN  T   LI
Sbjct: 423 ALQFFDTISDQRLRP-DIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILI 481

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
                 G ++       EMVN      GI  PN+  Y S+I G C+   V + +    +M
Sbjct: 482 DSHCEKGQVDNAFAFLDEMVNK-----GIV-PNIMTYNSIIKGYCRSGNVSKGQQFLPKM 535

Query: 127 KDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           +        I  NTL+    K+ K+ EA  LL++M    + P   TY  +++G+ + G +
Sbjct: 536 RHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNM 595

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
             A  ++  M  +G  PD ++Y  +ING+    N +++  +  EM+  G 
Sbjct: 596 QEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGL 645


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 168/338 (49%), Gaps = 22/338 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V + ++I   C +G + +A+ L+ +M   GC  +V T D ++ G+   G +    +L 
Sbjct: 193 DAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARL- 251

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-NTLL---C 138
              V+ M   G +  P V  YG L+ GLC+ R  D+ + +   + +  +   NT++    
Sbjct: 252 ---VDRMMTKGCM--PGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCL 306

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
            + KL EA  L E M  +G  P   TY+ L++G C +G++  A+ L   M +KGF P+V 
Sbjct: 307 AEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVV 366

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y+++++ +CKN             + +  + +  EM    +   +   N  I  LCK+G
Sbjct: 367 TYTIVLHSFCKNG------------MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDG 414

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + E M L   +    C   +  +N++I   C     E A  +F  L  + +VA+ + YN
Sbjct: 415 RMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYN 474

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +IHAL ++G+ +    L   M  +GC+LDV ++N L+
Sbjct: 475 TIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLI 512



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 158/331 (47%), Gaps = 37/331 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V FN++I G   EG + +A++L + M   GC+P+  T   L+ GL + G +   ++L
Sbjct: 293 LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRL 352

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
            +EM          + PNV  Y  ++   CK+ + D T+ L  EM  KG+  N+      
Sbjct: 353 LREMEKKG------FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGM 406

Query: 136 --LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++ EA  L++ M  +G NP I +Y  ++   C   ++  A  +F+++  +G 
Sbjct: 407 IYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGV 466

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMIL----------NGFKK------------- 230
           + +  +Y+ +I+   ++   ++A+ +++EMIL          NG  K             
Sbjct: 467 VANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLV 526

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +  EM    + P   + NI I  LCK   V + +EL   +        +  +N+LI G C
Sbjct: 527 LLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLC 586

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           K G    A  L  KL  +N+  D++ YNILI
Sbjct: 587 KMGWMHAALNLLEKLHNENVHPDIITYNILI 617



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 26/290 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+  ++  FC  G   D   L+++M+  G   N    + +I  L + G M+  + L 
Sbjct: 364 NVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLI 423

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QEM +   +      P++  Y ++I  LC +  +++ + +F  + ++G+ AN +      
Sbjct: 424 QEMRSQGCN------PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 477

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L +  +  +A RL + M+  G +  + +Y  L+   C  G V+ ++ L + MA KG  
Sbjct: 478 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 537

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  SY++LI+  CK   V +A+ +S++M+  G              P+  T N  I+GL
Sbjct: 538 PNNVSYNILISELCKERRVRDALELSKQMLNQGL------------APDIVTYNTLINGL 585

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
           CK G +   + L   L   N    +  +N LI   CK  + + A+ L N+
Sbjct: 586 CKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNR 635



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 152/385 (39%), Gaps = 79/385 (20%)

Query: 11  FGSFIRRCYR---PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           F  + R  +R   P    TF    +  C  G   +A  L++ MA  GC P+         
Sbjct: 143 FALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAV------- 195

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
                        L+Q +++ + D GG+ +        L+ G   D  V+   D+   M 
Sbjct: 196 -------------LYQTVIHALCDQGGVTEAATLLNEMLLMGCAAD--VNTFDDVVRGM- 239

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV------------ 175
                     C   ++ EA RL++ MM +G  P + TY  LL G C V            
Sbjct: 240 ----------CGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGR 289

Query: 176 -------------------GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
                              GK+  A  L+++M  KG  PD  +YS+L++G CK   +  A
Sbjct: 290 VPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSA 349

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           + + REM   GF             P   T  I +   CKNG   +   L   +      
Sbjct: 350 VRLLREMEKKGF------------APNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLT 397

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
           L  + +N +I   CK G  + A  L  ++  +    D+ +YN +I+ L    Q+++  ++
Sbjct: 398 LNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHM 457

Query: 337 LLSMEENGCALDVDTFNTLMISFLQ 361
             ++ E G   +  T+NT++ + L+
Sbjct: 458 FENLLEEGVVANGITYNTIIHALLR 482



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 125/294 (42%), Gaps = 27/294 (9%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANR 148
            P  F +G     LC+    D+   L   M   G   + +L        C +  + EA  
Sbjct: 156 PPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAAT 215

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           LL  M+  G    + T+  ++ G C +G+V  A  L D M  KG MP V +Y  L+ G C
Sbjct: 216 LLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLC 275

Query: 209 KNFNVEEA---------MNVS----------REMILNGFKKIFNEMKLCNVVPETFTCNI 249
           +    +EA         +NV            E  L    +++  M L    P+  T +I
Sbjct: 276 RVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSI 335

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            + GLCK G +   + L   +E       V  +  ++   CK G+++    L  ++S K 
Sbjct: 336 LMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKG 395

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           L  +   YN +I+AL K+G++ +   L+  M   GC  D+ ++NT++      E
Sbjct: 396 LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNE 449



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 49/231 (21%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV---------------------- 59
           LN   +N +I   C +G + +A  L+++M + GC P++                      
Sbjct: 398 LNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHM 457

Query: 60  -------------TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSL 106
                         T +T+I  L R G     ++L +EM+            +V  Y  L
Sbjct: 458 FENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSL------DVVSYNGL 511

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGL 158
           I  +CKD  VD++  L  EM +KGI  N +        LCK+ ++ +A  L + M+ +GL
Sbjct: 512 IKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGL 571

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            P I TY  L+NG C +G ++ A+ L + +  +   PD+ +Y++LI+ +CK
Sbjct: 572 APDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK 622


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 177/393 (45%), Gaps = 39/393 (9%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +VL A     + + R +  +++ T   +I  FC +G +        KM   G  PNV   
Sbjct: 239 RVLEAERWLNAMVERGF-IVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINF 297

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI GL + G++    +L +EMV         +KPNV+ + +LIDGLCK    ++   L
Sbjct: 298 TALINGLCKQGSIKQAFELLEEMVRRG------WKPNVYTHTTLIDGLCKKGWTEKAFRL 351

Query: 123 FMEM-KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           F+++ +  G   N           CK+ KL  A  LL  M ++GL P   TYT L++G+C
Sbjct: 352 FLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHC 411

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK--- 230
            VG    A  L D M ++GF P++++Y+ +I+G CK  +++EA  +  ++ ++G +    
Sbjct: 412 KVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGV 471

Query: 231 --------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                                FN+M      P+  +    I   C+   + E   LF   
Sbjct: 472 TYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEA 531

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                    + + S+I G C++G   +A +LF ++S      D + Y  LI  L KE ++
Sbjct: 532 VSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKL 591

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
                L  +M + G +    T  TL   + +K+
Sbjct: 592 DDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKD 624



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 163/381 (42%), Gaps = 103/381 (27%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + F +LI G C +G+I+ A +L+++M   G +PNV T  TLI GL + G      +L 
Sbjct: 293 NVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLF 352

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTLL--- 137
            ++V   G     YKPNV  Y ++I+G CK+  +++ + L   M+++G+  N NT     
Sbjct: 353 LKLVRSDG-----YKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC----------LVGKVNV---- 180
              CK    V A  L++LM + G +P I+TY  +++G C          L+ KV+V    
Sbjct: 408 DGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQ 467

Query: 181 ---------------------AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
                                ++  F+ M + GF PD+ SY+ LI+ +C+   ++E+  +
Sbjct: 468 ADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERL 527

Query: 220 SREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             E +  G                         K+F  M      P++ T    I GLCK
Sbjct: 528 FEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCK 587

Query: 257 NGHVLEVMELFPTL---EISNCEL-----------------------------FVEIFNS 284
              + +   L+  +    +S CE+                             ++   N+
Sbjct: 588 ESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNT 647

Query: 285 LIRGCCKFGIFEIASELFNKL 305
           L+R  C  G  ++A+  F+KL
Sbjct: 648 LVRKLCSEGKLDMAALFFHKL 668



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 122/257 (47%), Gaps = 21/257 (8%)

Query: 115 LVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
           LV+  +++F+EM  +G++ + +         C   +++EA R L  M++RG      T T
Sbjct: 204 LVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCT 263

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            +++ +C  G VN  +  F  M   G  P+V +++ LING CK  ++++A  +  EM+  
Sbjct: 264 LIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRR 323

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-CELFVEIFNSL 285
           G+K            P  +T    IDGLCK G   +   LF  L  S+  +  V  + ++
Sbjct: 324 GWK------------PNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAM 371

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G CK      A  L +++  + LV +   Y  LI    K G   +   L+  M + G 
Sbjct: 372 INGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGF 431

Query: 346 ALDVDTFNTLMISFLQK 362
           + ++ T+N ++    +K
Sbjct: 432 SPNIYTYNAIIDGLCKK 448



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 24/239 (10%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           KL EA  ++  M  +GL P   T   +L+    +G V +A  +F  M ++G  PD  S+ 
Sbjct: 169 KLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFK 228

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLC 238
           +++   C    V EA      M+  GF                          F +M   
Sbjct: 229 LMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEM 288

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            + P        I+GLCK G + +  EL   +     +  V    +LI G CK G  E A
Sbjct: 289 GLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKA 348

Query: 299 SELFNKL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             LF KL        +V  Y  +I+   KE ++ +   LL  M+E G   + +T+ TL+
Sbjct: 349 FRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 153/299 (51%), Gaps = 26/299 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VTF  LI G+C  G+++DA ++   M   GC PNV T  TLI GL + G+++      
Sbjct: 420 DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSA---- 475

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            E+++ M   G   +PN+F Y S+++GLCK   +++   L  E +  G+NA+T+      
Sbjct: 476 NELLHEMWKIG--LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 533

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  ++ +A  +L+ M+ +GL P I T+  L+NG+CL G +     L + M  KG  
Sbjct: 534 DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIA 593

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +++ L+  YC   N++ A  + ++M   G            V P+  T    + G 
Sbjct: 594 PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG------------VGPDGKTYENLVKGH 641

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           CK  ++ E   LF  ++     + V  ++ LI+G  K   F  A E+F+++  + L AD
Sbjct: 642 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 164/349 (46%), Gaps = 27/349 (7%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P + +++++++ G+C  G +    +L++ M   G +PN     ++I  L R   +   
Sbjct: 277 YTP-DVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
            +   EM+       GI  P+   Y +LIDG CK   +      F EM  + I  + L  
Sbjct: 336 EEAFSEMIR-----QGIL-PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY 389

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                  C+   +VEA +L   M  +GL P   T+T L+NGYC  G +  A  + + M +
Sbjct: 390 TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ 449

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  P+V +Y+ LI+G CK  +++ A  +  EM   G +            P  FT N  
Sbjct: 450 AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ------------PNIFTYNSI 497

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           ++GLCK+G++ E ++L    E +        + +L+   CK G  + A E+  ++  K L
Sbjct: 498 VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              +V +N+L++     G ++    LL  M   G A +  TFN+L+  +
Sbjct: 558 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 170/372 (45%), Gaps = 33/372 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A  AF   IR+   P + V + +LI GFC  G+IR AS+   +M +    P+V T 
Sbjct: 331 KLAEAEEAFSEMIRQGILP-DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY 389

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             +I+G  + G+M    KL  EM      F    +P+   +  LI+G CK       KD 
Sbjct: 390 TAIISGFCQIGDMVEAGKLFHEM------FCKGLEPDSVTFTELINGYCK---AGHMKDA 440

Query: 123 FM---EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
           F     M   G + N +        LCK+  L  AN LL  M + GL P IFTY  ++NG
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 500

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
            C  G +  A+ L       G   D  +Y+ L++ YCK+  +++A  + +EM+  G +  
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ-- 558

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                     P   T N+ ++G C +G + +  +L   +           FNSL++  C 
Sbjct: 559 ----------PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI 608

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               + A+ ++  +  + +  D   Y  L+    K   +K+  +L   M+  G ++ V T
Sbjct: 609 RNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST 668

Query: 352 FNTLMISFLQKE 363
           ++ L+  FL+++
Sbjct: 669 YSVLIKGFLKRK 680



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 165/383 (43%), Gaps = 61/383 (15%)

Query: 38  GNIRDASQLVKKMATFGCRPNVTTCDTLITGLR----RTGNMNLTLKLHQE--------- 84
           G +R+A ++ +KM  +G   +V +C+  +T L     +T    +  +   E         
Sbjct: 189 GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVAS 248

Query: 85  ---MVNGMGDFGGI--------------YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
              +++ +   G I              Y P+V  Y ++++G C+   +D+   L   MK
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 308

Query: 128 DKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
            KG+  N+        LLC+  KL EA      M+++G+ P    YT L++G+C  G + 
Sbjct: 309 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 368

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------IL 225
            A   F  M  +   PDV +Y+ +I+G+C+  ++ EA  +  EM              ++
Sbjct: 369 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 428

Query: 226 NGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           NG+ K         + N M      P   T    IDGLCK G +    EL   +     +
Sbjct: 429 NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 488

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             +  +NS++ G CK G  E A +L  +     L AD V Y  L+ A  K G++ K   +
Sbjct: 489 PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 548

Query: 337 LLSMEENGCALDVDTFNTLMISF 359
           L  M   G    + TFN LM  F
Sbjct: 549 LKEMLGKGLQPTIVTFNVLMNGF 571



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 54/258 (20%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI G C EG++  A++L+ +M   G +PN+ T ++++ GL ++GN+       
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNI------- 507

Query: 83  QEMVNGMGDFGGI-YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           +E V  +G+F       +   Y +L+D  CK   +D+ +++  EM  KG+    +     
Sbjct: 508 EEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVL 567

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C    L +  +LL  M+ +G+ P   T+  L+  YC+   +  A A++  M  +G 
Sbjct: 568 MNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGV 627

Query: 194 MPD-----------------------------------VFSYSVLINGYCKNFNVEEAMN 218
            PD                                   V +YSVLI G+ K     EA  
Sbjct: 628 GPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEARE 687

Query: 219 VSREMILNGF---KKIFN 233
           V  +M   G    K+IF+
Sbjct: 688 VFDQMRREGLAADKEIFD 705



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 17/222 (7%)

Query: 143 LVEANRLLELMMQRGLNPVIFT---YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           L EA R+ E M+  GL   + +   Y   L+  C   K   AI +F      G   +V S
Sbjct: 191 LREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCY--KTATAIIVFREFPEVGVCWNVAS 248

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+++I+  C+   ++EA ++   M L G+             P+  + +  ++G C+ G 
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGY------------TPDVISYSTVVNGYCRFGE 296

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + +V +L   ++    +    I+ S+I   C+      A E F+++  + ++ D V Y  
Sbjct: 297 LDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTT 356

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           LI    K G I+  +     M       DV T+  ++  F Q
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 398


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 177/393 (45%), Gaps = 39/393 (9%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +VL A     + + R +  +++ T   +I  FC +G +        KM   G  PNV   
Sbjct: 239 RVLEAEKWLNAMVERGF-IVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINF 297

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI GL + G++    +L +EMV         +KPNV+ + +LIDGLCK    ++   L
Sbjct: 298 TALINGLCKQGSIKQAFELLEEMVRRG------WKPNVYTHTTLIDGLCKKGWTEKAFRL 351

Query: 123 FMEM-KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           F+++ +  G   N           CK+ KL  A  LL  M ++GL P   TYT L++G+C
Sbjct: 352 FLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHC 411

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK--- 230
            VG    A  L D M ++GF P++++Y+ +I+G CK  +++EA  +  ++ ++G +    
Sbjct: 412 KVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGV 471

Query: 231 --------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                                FN+M      P+  +    I   C+   + E   LF   
Sbjct: 472 TYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEA 531

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                    + + S+I G C++G   +A +LF ++S      D + Y  LI  L KE ++
Sbjct: 532 VSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKL 591

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
                L  +M + G +    T  TL   + +K+
Sbjct: 592 DDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKD 624



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 163/381 (42%), Gaps = 103/381 (27%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + F +LI G C +G+I+ A +L+++M   G +PNV T  TLI GL + G      +L 
Sbjct: 293 NVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLF 352

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTLL--- 137
            ++V   G     YKPNV  Y ++I+G CK+  +++ + L   M+++G+  N NT     
Sbjct: 353 LKLVRSDG-----YKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC----------LVGKVNV---- 180
              CK    V A  L++LM + G +P I+TY  +++G C          L+ KV+V    
Sbjct: 408 DGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQ 467

Query: 181 ---------------------AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
                                ++  F+ M + GF PD+ SY+ LI+ +C+   ++E+  +
Sbjct: 468 ADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERL 527

Query: 220 SREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             E +  G                         K+F  M      P++ T    I GLCK
Sbjct: 528 FEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCK 587

Query: 257 NGHVLEVMELFPTL---EISNCEL-----------------------------FVEIFNS 284
              + +   L+  +    +S CE+                             ++   N+
Sbjct: 588 ESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNT 647

Query: 285 LIRGCCKFGIFEIASELFNKL 305
           L+R  C  G  ++A+  F+KL
Sbjct: 648 LVRKLCSEGKLDMAALFFHKL 668



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 21/257 (8%)

Query: 115 LVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
           LV+  +++F+EM  +G++ + +         C   +++EA + L  M++RG      T T
Sbjct: 204 LVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCT 263

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            +++ +C  G VN  +  F  M   G  P+V +++ LING CK  ++++A  +  EM+  
Sbjct: 264 LIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRR 323

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-CELFVEIFNSL 285
           G+K            P  +T    IDGLCK G   +   LF  L  S+  +  V  + ++
Sbjct: 324 GWK------------PNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAM 371

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G CK      A  L +++  + LV +   Y  LI    K G   +   L+  M + G 
Sbjct: 372 INGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGF 431

Query: 346 ALDVDTFNTLMISFLQK 362
           + ++ T+N ++    +K
Sbjct: 432 SPNIYTYNAIIDGLCKK 448



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 96/239 (40%), Gaps = 24/239 (10%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           KL EA  ++  M  +GL     T   +L+    +G V +A  +F  M ++G  PD  S+ 
Sbjct: 169 KLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFK 228

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLC 238
           +++   C    V EA      M+  GF                          F +M   
Sbjct: 229 LMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEM 288

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            + P        I+GLCK G + +  EL   +     +  V    +LI G CK G  E A
Sbjct: 289 GLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKA 348

Query: 299 SELFNKL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             LF KL        +V  Y  +I+   KE ++ +   LL  M+E G   + +T+ TL+
Sbjct: 349 FRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 140/310 (45%), Gaps = 41/310 (13%)

Query: 95  IYKP--------NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
           IY+P        +V  Y   I+GLCK   + +  ++F EM++KG   ++         LC
Sbjct: 78  IYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLC 137

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  +L     L++ M  RG +P + TYT L++G+C  G+V+ A+ + D M  +G  P+  
Sbjct: 138 KDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTV 197

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFK-------------------------KIFN 233
           +Y+ LI G C    VE A+ V +EM L G +                         +  +
Sbjct: 198 TYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLD 257

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM +    P   T    I GLC+ G  LE   L   +    CEL V I+NSLI G CK G
Sbjct: 258 EMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMG 317

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A E+   +  K +  DV  Y  LI  L   G + +   L+  M   G   +  T+ 
Sbjct: 318 ELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYT 377

Query: 354 TLMISFLQKE 363
           TL+  F Q +
Sbjct: 378 TLINGFTQAD 387



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 108/216 (50%), Gaps = 16/216 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGLRRTGNMNLTLK 80
           N VT+ +LI+G C  G +  A  ++K+M   G  C PNV T   LI GL + G   + ++
Sbjct: 195 NTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGME 254

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
              EM+       G + PN   Y +LI GLC+     +   L  EM   G   + +    
Sbjct: 255 FLDEMI-----ISGCF-PNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNS 308

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  +L  A  +  LM+++G+ P +FTYT L+ G C  G ++ A+ L   M  KG
Sbjct: 309 LIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKG 368

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
            +P+  +Y+ LING+ +    + A+ +  EM  NG 
Sbjct: 369 IVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGL 404



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 111/250 (44%), Gaps = 24/250 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +LI GFC  G +  A  ++ +M   G  PN  T   LI GL   G +   + + +E
Sbjct: 162 VTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKE 221

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
               M   G    PNV  Y  LI GLC+  L +   +   EM   G   N          
Sbjct: 222 ----MKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHG 277

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+K   +EA  LL  M+  G    +  Y  L++G C +G+++ A  +   M  KG  PD
Sbjct: 278 LCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPD 337

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           VF+Y+ LI G C    ++EA+ + +EM   G            +VP + T    I+G  +
Sbjct: 338 VFTYTSLIQGLCDAGLLDEALGLMQEMRAKG------------IVPNSVTYTTLINGFTQ 385

Query: 257 NGHVLEVMEL 266
                  ++L
Sbjct: 386 ADRTDHALQL 395



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 33/181 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ T+ +LI G C +G+  +A+ L+ +M   GC  +V   ++LI GL + G ++   ++ 
Sbjct: 267 NNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQ 326

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             MV       G+  P+VF Y SLI GLC   L+D+   L  EM+ KGI  N++      
Sbjct: 327 ILMVEK-----GV-APDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSV------ 374

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                                TYT L+NG+    + + A+ L + M   G MP    Y +
Sbjct: 375 ---------------------TYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKI 413

Query: 203 L 203
           L
Sbjct: 414 L 414



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ V +NSLI G C  G +  A ++   M   G  P+V T  +LI GL   G ++  L L
Sbjct: 301 LDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGL 360

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
            QEM        GI  PN   Y +LI+G  +    D    L  EMK  G+
Sbjct: 361 MQEM-----RAKGIV-PNSVTYTTLINGFTQADRTDHALQLVNEMKSNGL 404


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 176/366 (48%), Gaps = 34/366 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+   FN+LI  +     +  A Q +      G RP   T  ++I    + G++   L +
Sbjct: 28  LDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLLM 87

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLL 137
           +++M+         + P+   +  LID L K   V++  ++F +M    ++ +    T+L
Sbjct: 88  YKQMLKAK------FVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTIL 141

Query: 138 CKK----TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
            +      ++    +L E M  +G  P +FTY  +++ +   G+V+ A  +F  M +KG 
Sbjct: 142 IRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGL 201

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMN--------------------VSREMILNGFKKIFN 233
            PD  +Y++LI+ + K   +E A +                    + R+  + G  ++F 
Sbjct: 202 QPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFG 261

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +MK   +V    T  I I+ L   G V +V +L+  +  ++ +  +   N+++    K G
Sbjct: 262 QMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAG 321

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A ELF  +  K L AD V YNILI+ LG+ G++     LLL MEENGCA ++ T+N
Sbjct: 322 RVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYN 381

Query: 354 TLMISF 359
           TL+ S+
Sbjct: 382 TLISSY 387



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 157/381 (41%), Gaps = 35/381 (9%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V   L+ +   ++  + P +  TFN LI        + +A  +   M      P+V T  
Sbjct: 81  VQNGLLMYKQMLKAKFVP-DHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYT 139

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            LI  L   G ++  +KL + M    G      +PN+F Y S++        VD+  D+F
Sbjct: 140 ILIRSLGTIGRIDAVMKLFESMT-AQG-----CQPNLFTYHSVMHAFGSAGRVDEACDIF 193

Query: 124 MEMKDKGINA-----NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            +M  KG+       N L+    K  +  R  + + +        TY  LL+     G +
Sbjct: 194 QQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDI 253

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--------- 229
              + LF  M  KG + +  +Y++LI        VE+   +  EM+ N  K         
Sbjct: 254 QGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNV 313

Query: 230 --------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                         ++F +MK   +  +T T NI I+GL + G +     L   +E + C
Sbjct: 314 LDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGC 373

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              +  +N+LI    K+     A+ LF ++  + +  +VV+Y+ LI   GK G+      
Sbjct: 374 APNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAIS 433

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           L   M+  GC  +  T+N L+
Sbjct: 434 LFREMKAEGCPPNHVTYNLLI 454



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 123/272 (45%), Gaps = 26/272 (9%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           F+ +     N+VT+NSL+     +G+I+   +L  +M   G   N  T   LI  L   G
Sbjct: 227 FVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAG 286

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            +    +L+ EMV+         K ++    +++D L K   V+   +LF +MK KG+NA
Sbjct: 287 RVEDVWQLYLEMVDN------DIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNA 340

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +T+        L +  KL  A  LL  M + G  P I TY  L++ Y     ++ A  LF
Sbjct: 341 DTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLF 400

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             M  +G  P+V SYS LI G+ K    + A++            +F EMK     P   
Sbjct: 401 LEMKERGVAPNVVSYSSLIEGFGKAGRTDAAIS------------LFREMKAEGCPPNHV 448

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
           T N+ ID L + G     ME    +  + C++
Sbjct: 449 TYNLLIDCLIRAGRFGAAMEYLREMRDAGCQM 480



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 137/332 (41%), Gaps = 33/332 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++S++  F   G + +A  + ++M   G +P+  T + LI    +TG +          
Sbjct: 172 TYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAF------ 225

Query: 86  VNGMGDFGGIYKP--NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
                DF G  +   N   Y SL+  L +   +    +LF +MK KG+ +N L       
Sbjct: 226 -----DFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIE 280

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            L    ++ +  +L   M+   +   I T   +L+     G+V  A  LF  M  KG   
Sbjct: 281 RLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNA 340

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D  +Y++LING  +   ++ A  +  EM  NG          C   P   T N  I    
Sbjct: 341 DTVTYNILINGLGRAGKLDAAGALLLEMEENG----------C--APNIITYNTLISSYG 388

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K  ++     LF  ++       V  ++SLI G  K G  + A  LF ++  +    + V
Sbjct: 389 KWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHV 448

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
            YN+LI  L + G+       L  M + GC +
Sbjct: 449 TYNLLIDCLIRAGRFGAAMEYLREMRDAGCQM 480


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 153/299 (51%), Gaps = 26/299 (8%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            + VTF  LI G+C  G+++DA ++   M   GC PNV T  TLI GL + G+++      
Sbjct: 863  DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSA---- 918

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             E+++ M   G   +PN+F Y S+++GLCK   +++   L  E +  G+NA+T+      
Sbjct: 919  NELLHEMWKIG--LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 976

Query: 137  --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               CK  ++ +A  +L+ M+ +GL P I T+  L+NG+CL G +     L + M  KG  
Sbjct: 977  DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIA 1036

Query: 195  PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            P+  +++ L+  YC   N++ A  + ++M   G            V P+  T    + G 
Sbjct: 1037 PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG------------VGPDGKTYENLVKGH 1084

Query: 255  CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK  ++ E   LF  ++     + V  ++ LI+G  K   F  A E+F+++  + L AD
Sbjct: 1085 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 1143



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 164/349 (46%), Gaps = 27/349 (7%)

Query: 19   YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
            Y P + +++++++ G+C  G +    +L++ M   G +PN     ++I  L R   +   
Sbjct: 720  YTP-DVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 778

Query: 79   LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
             +   EM+       GI  P+   Y +LIDG CK   +      F EM  + I  + L  
Sbjct: 779  EEAFSEMIR-----QGIL-PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY 832

Query: 137  ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                   C+   +VEA +L   M  +GL P   T+T L+NGYC  G +  A  + + M +
Sbjct: 833  TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ 892

Query: 191  KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
             G  P+V +Y+ LI+G CK  +++ A  +  EM   G +            P  FT N  
Sbjct: 893  AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ------------PNIFTYNSI 940

Query: 251  IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
            ++GLCK+G++ E ++L    E +        + +L+   CK G  + A E+  ++  K L
Sbjct: 941  VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 1000

Query: 311  VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
               +V +N+L++     G ++    LL  M   G A +  TFN+L+  +
Sbjct: 1001 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 1049



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 170/372 (45%), Gaps = 33/372 (8%)

Query: 3    KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            K+  A  AF   IR+   P + V + +LI GFC  G+IR AS+   +M +    P+V T 
Sbjct: 774  KLAEAEEAFSEMIRQGILP-DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY 832

Query: 63   DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
              +I+G  + G+M    KL  EM      F    +P+   +  LI+G CK       KD 
Sbjct: 833  TAIISGFCQIGDMVEAGKLFHEM------FCKGLEPDSVTFTELINGYCK---AGHMKDA 883

Query: 123  FM---EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
            F     M   G + N +        LCK+  L  AN LL  M + GL P IFTY  ++NG
Sbjct: 884  FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 943

Query: 172  YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
             C  G +  A+ L       G   D  +Y+ L++ YCK+  +++A  + +EM+  G +  
Sbjct: 944  LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ-- 1001

Query: 232  FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                      P   T N+ ++G C +G + +  +L   +           FNSL++  C 
Sbjct: 1002 ----------PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI 1051

Query: 292  FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
                + A+ ++  +  + +  D   Y  L+    K   +K+  +L   M+  G ++ V T
Sbjct: 1052 RNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST 1111

Query: 352  FNTLMISFLQKE 363
            ++ L+  FL+++
Sbjct: 1112 YSVLIKGFLKRK 1123



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 165/383 (43%), Gaps = 61/383 (15%)

Query: 38   GNIRDASQLVKKMATFGCRPNVTTCDTLITGLR----RTGNMNLTLKLHQE--------- 84
            G +R+A ++ +KM  +G   +V +C+  +T L     +T    +  +   E         
Sbjct: 632  GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVAS 691

Query: 85   ---MVNGMGDFGGI--------------YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
               +++ +   G I              Y P+V  Y ++++G C+   +D+   L   MK
Sbjct: 692  YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 751

Query: 128  DKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
             KG+  N+        LLC+  KL EA      M+++G+ P    YT L++G+C  G + 
Sbjct: 752  RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 811

Query: 180  VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------IL 225
             A   F  M  +   PDV +Y+ +I+G+C+  ++ EA  +  EM              ++
Sbjct: 812  AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 871

Query: 226  NGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
            NG+ K         + N M      P   T    IDGLCK G +    EL   +     +
Sbjct: 872  NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 931

Query: 277  LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
              +  +NS++ G CK G  E A +L  +     L AD V Y  L+ A  K G++ K   +
Sbjct: 932  PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 991

Query: 337  LLSMEENGCALDVDTFNTLMISF 359
            L  M   G    + TFN LM  F
Sbjct: 992  LKEMLGKGLQPTIVTFNVLMNGF 1014



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 54/258 (20%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N VT+ +LI G C EG++  A++L+ +M   G +PN+ T ++++ GL ++GN+   +KL 
Sbjct: 898  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL- 956

Query: 83   QEMVNGMGDFGGI-YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
                  +G+F       +   Y +L+D  CK   +D+ +++  EM  KG+    +     
Sbjct: 957  ------VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVL 1010

Query: 137  ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                C    L +  +LL  M+ +G+ P   T+  L+  YC+   +  A A++  M  +G 
Sbjct: 1011 MNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGV 1070

Query: 194  MPD-----------------------------------VFSYSVLINGYCKNFNVEEAMN 218
             PD                                   V +YSVLI G+ K     EA  
Sbjct: 1071 GPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEARE 1130

Query: 219  VSREMILNGF---KKIFN 233
            V  +M   G    K+IF+
Sbjct: 1131 VFDQMRREGLAADKEIFD 1148



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 17/222 (7%)

Query: 143 LVEANRLLELMMQRGLNPVIFT---YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           L EA R+ E M+  GL   + +   Y   L+  C   K   AI +F      G   +V S
Sbjct: 634 LREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCY--KTATAIIVFREFPEVGVCWNVAS 691

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+++I+  C+   ++EA ++   M L G+             P+  + +  ++G C+ G 
Sbjct: 692 YNIVIHFVCQLGRIKEAHHLLLLMELKGY------------TPDVISYSTVVNGYCRFGE 739

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + +V +L   ++    +    I+ S+I   C+      A E F+++  + ++ D V Y  
Sbjct: 740 LDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTT 799

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           LI    K G I+  +     M       DV T+  ++  F Q
Sbjct: 800 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 841


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 156/363 (42%), Gaps = 39/363 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            F  LI      G    A  + KK+   GC+ +    + LI    R+G ++  +++ +EM
Sbjct: 67  AFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREM 126

Query: 86  -VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TL 136
            + G        +P+ + YG L++ L K   V + +  F  M ++G+  N          
Sbjct: 127 KIKGS-------EPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDA 179

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K  +L  A  L   M +RG  P + TY  LL+  C  G+V  A  LF  M   G  PD
Sbjct: 180 FRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPD 239

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
            ++YS L+NG  K+  VEEA  V REM+  G                         K+  
Sbjct: 240 SYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMK 299

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM      P+ F+ N  +D L K        E+F  +  S C+  +  +N LI    +FG
Sbjct: 300 EMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFG 359

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A ++  ++     + +   YN LIH L  +GQ+ +   +L  ME  GC  DV T+N
Sbjct: 360 DAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYN 419

Query: 354 TLM 356
            LM
Sbjct: 420 RLM 422



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 26/350 (7%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RPL   T   LI  +       DA  L  +  +F C P V     LI  L  +G      
Sbjct: 26  RPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAE 85

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            +++++V            + F Y  LI    +   +D   ++F EMK KG   +     
Sbjct: 86  LVYKKLVQKGCQL------DRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYG 139

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                L K  ++ EA    + M++RGL P I TY  L++ +  VG++++A+ LF  M R+
Sbjct: 140 FLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRR 199

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           GF P V +Y++L++  C    V  A            +K+F++M      P+++T +  +
Sbjct: 200 GFQPSVVTYNILLDALCSAGRVGAA------------RKLFHKMTGDGCSPDSYTYSTLV 247

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +GL K+G V E  ++F  +      + +  +NSL+    K G  +   +L  ++S K   
Sbjct: 248 NGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFH 307

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            D  ++N ++ ALGK  +      +   M E+GC  D+ ++N L+ S+ +
Sbjct: 308 PDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYAR 357



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 154/353 (43%), Gaps = 52/353 (14%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F    RR ++P + VT+N L+   C  G +  A +L  KM   GC P+  T  TL+
Sbjct: 189 ALGLFAEMKRRGFQP-SVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLV 247

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL ++G +    K+ +EMV                          DR V    DL    
Sbjct: 248 NGLGKSGRVEEAHKVFREMV--------------------------DRGV--AVDL---- 275

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQ---RGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
               +N N+LL    K    +R+ +LM +   +G +P  F++  +++      K + A  
Sbjct: 276 ----VNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAARE 331

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           +F  M   G  PD+ SY++LI+ Y +  +  +A  +  EM+  GF            +PE
Sbjct: 332 VFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGF------------IPE 379

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
           T T N  I  L  +G V E   +   +E + C   V  +N L+    K G  + A+ LF 
Sbjct: 380 TKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQ 439

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++  K +  D ++Y + I  L  + ++ +   L   M+  GC +D   +  L+
Sbjct: 440 QMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILI 492



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 145/338 (42%), Gaps = 26/338 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++ T+  L+      G +++A      M   G  PN+ T + L+   R+ G +++ L L 
Sbjct: 134 DEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLF 193

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM          ++P+V  Y  L+D LC    V   + LF +M   G + ++       
Sbjct: 194 AEMKRRG------FQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLV 247

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K  ++ EA+++   M+ RG+   +  Y  LL      G ++    L   M+RKGF 
Sbjct: 248 NGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFH 307

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD FS++ +++   K    + A  V   M+ +G K            P+  + NI ID  
Sbjct: 308 PDAFSFNTIMDALGKANKPDAAREVFARMVESGCK------------PDLISYNILIDSY 355

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            + G   +  ++   +  +      + +NSLI      G  + A  +  ++       DV
Sbjct: 356 ARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDV 415

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           V YN L+  LGK G+ ++   L   M++ G   D  ++
Sbjct: 416 VTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSY 453


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 166/351 (47%), Gaps = 32/351 (9%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C  P + VT+N LI+GFC   ++  A  L+++M   G + N  T   ++ GL R G +  
Sbjct: 19  CQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQ 78

Query: 78  TLKLHQ---EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG---I 131
            L+      E+ +         +P+V  Y +LI+GLCK   VD   DLF +M   G    
Sbjct: 79  ALEHFDASLELAHA--------QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRP 130

Query: 132 NANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           NA T       LCK+ +L  A  ++    +R   P + TY  L+     +G+V+ A+A F
Sbjct: 131 NAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATF 190

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             M  +G++P + S++ +I G C+   + +A+ V  EMI   F             P   
Sbjct: 191 TQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFH------------PNLV 238

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T ++ IDGLCK+  + E  +L   +    C   +  +  L+ G    G  + A  L  ++
Sbjct: 239 TYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRM 298

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             +  + DVV Y ++I  L K G++   + +   +  N C+ +V T++ L+
Sbjct: 299 VSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALI 349



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 158/360 (43%), Gaps = 53/360 (14%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKM-ATFGCRPNVTT 61
           +V  AL  F + +   +   + V++ +LI G C  G +  A  L +KM A  GCRPN  T
Sbjct: 75  RVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFT 134

Query: 62  CDTLITGLRRTGNMNLTLKLHQE---------------MVNGMGDFGGI----------- 95
            + L+ GL +   ++    +  E               ++  +   G +           
Sbjct: 135 YNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMT 194

Query: 96  ---YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLV 144
              Y P +  + ++I GLC+ R +    ++F EM D+  + N +        LCK  +L 
Sbjct: 195 EEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLD 254

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           EA +LL+ M+  G  P +  YTPL+ G+   G+++ A+ L   M  +G +PDV +Y+V+I
Sbjct: 255 EAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVI 314

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           +  CK   V++A  + RE++ N               P   T +  I G C+   V E  
Sbjct: 315 DKLCKVGRVDDAHEIFRELVAN------------KCSPNVVTYSALIGGYCRASRVDEGG 362

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           ++   +    C   V  +N++I G       E A  +F ++S    V D   Y  L  AL
Sbjct: 363 KVMREMA---CRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRAL 419



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 135/299 (45%), Gaps = 29/299 (9%)

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R G+ N  L+L +E    +         +   Y  LI G C    +D    L  EM  +G
Sbjct: 3   RAGSHNQALQLFRENPCQL-------PASSVTYNVLIRGFCNASDLDAAFSLLREMDVEG 55

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVA 181
           +  N          LC+  ++ +A    +  ++     P + +YT L+NG C +G+V+ A
Sbjct: 56  MQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAA 115

Query: 182 IALFDSM-ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
             LF  M A  G  P+ F+Y+ L++G CK    ++ ++ +R +I    K+ F        
Sbjct: 116 FDLFRKMVAAGGCRPNAFTYNALVDGLCK----QDRLDAARAVITEARKRDF-------- 163

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T N  +  L + G V E +  F  +        +  FN++I G C+      A E
Sbjct: 164 APDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALE 223

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +FN++  ++   ++V Y+++I  L K  Q+ +   LL  M   GC  D+  +  L++ F
Sbjct: 224 VFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGF 282



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 14/165 (8%)

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y+VLI G+C   +++ A ++ REM + G +        CN      T +I + GLC+ G
Sbjct: 27  TYNVLIRGFCNASDLDAAFSLLREMDVEGMQ--------CN----DRTTSIILQGLCRCG 74

Query: 259 HVLEVMELF-PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL-SCKNLVADVVA 316
            V + +E F  +LE+++ +  V  + +LI G CK G  + A +LF K+ +      +   
Sbjct: 75  RVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFT 134

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           YN L+  L K+ ++     ++    +   A DV T+NTLM +  Q
Sbjct: 135 YNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQ 179


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 161/354 (45%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 104 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSY 163

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+G CK+   D     
Sbjct: 164 NTLMNGYIRLGDLDEGFRLKSAMLA-----SGV-QPDVYTYSVLINGXCKESKXD----- 212

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                                 +AN L + M+ +GL P    +T L++G+C  G+V++A+
Sbjct: 213 ----------------------DANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAM 250

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM   G K            P
Sbjct: 251 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLK------------P 298

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C  G    A ++ 
Sbjct: 299 DKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKML 358

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 359 REMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 58  FSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 117

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 118 ECG------YPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 171

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K + A  LFD M  KG +P+  
Sbjct: 172 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXV 231

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            ++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 232 XFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 279

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   +     +     + +LI GCCK G  + A E   ++  +N   D V Y 
Sbjct: 280 DLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYT 339

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L  EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 340 ALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 383



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V F +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 229 NXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD----LKQA 284

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             +++ M   G   KP+   Y +LIDG CK+  +D   +    M  +    + +      
Sbjct: 285 HHLIDEMSXKG--LKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALI 342

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC + + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G +
Sbjct: 343 SGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 402

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 403 PSVVTYNVLMNG 414


>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like, partial [Glycine max]
          Length = 594

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 165/340 (48%), Gaps = 28/340 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT N ++K F  EG I +AS  V KM   G  P+  T +T+I G  + G +    ++ 
Sbjct: 207 NAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMM 266

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
            EM        G+ KP++    +++  LC ++  ++  +L ++ + +G     +   TL+
Sbjct: 267 DEMARK-----GL-KPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVTYGTLI 320

Query: 138 C---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K  +  +A +L E M +RG+ P + +Y PL+ G CL GK + A+   + +  KG +
Sbjct: 321 MGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLV 380

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  S +++I+GYC    V++A     +M+ N FK            P+ FT NI + GL
Sbjct: 381 PDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFK------------PDIFTRNILLRGL 428

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+   + +  +LF +       + V  +N++I   CK G  + A +L   +  K    D 
Sbjct: 429 CRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQ 488

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
             YN ++ AL   G+ ++    +  + E G A  V T +T
Sbjct: 489 YTYNAIVRALTHAGRTEEAEKFMSKLSETGQA--VKTHDT 526



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 170/362 (46%), Gaps = 36/362 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N+L+KG C EG I +A ++  +M +    P+V T +TLI G  +        +L +EM
Sbjct: 139 TYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEM 198

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
            +     GG+ +PN   +  ++    K+  +++  D  ++M + G++      NT++   
Sbjct: 199 KSR----GGV-EPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGF 253

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  KL EA R+++ M ++GL P I T   +L+  C+  K   A  L     ++G++ D 
Sbjct: 254 CKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDE 313

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI-----------------------FNE 234
            +Y  LI GY K    ++A+ +  EM   G                            NE
Sbjct: 314 VTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNE 373

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           +    +VP+  +CNI I G C  G V +  +    +  ++ +  +   N L+RG C+  +
Sbjct: 374 LLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDM 433

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A +LFN    K    DVV YN +I  L KEG++ +   L+  ME      D  T+N 
Sbjct: 434 LEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTYNA 493

Query: 355 LM 356
           ++
Sbjct: 494 IV 495



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 126/302 (41%), Gaps = 56/302 (18%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLL--CKKTK-LVEANRLL 150
           +V+ Y +L+ GLC +  +D+   +  EM+        +  NTL+  C K +   E  RLL
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLL 195

Query: 151 ELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           E M  RG + P   T+  ++  +   GK+N A      M   G  PD F+Y+ +ING+CK
Sbjct: 196 EEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCK 255

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC-------------- 255
              + EA  +  EM   G K            P+  T N  +  LC              
Sbjct: 256 AGKLGEAFRMMDEMARKGLK------------PDICTLNTMLHTLCMEKKPEEAYELTVK 303

Query: 256 --KNGHVLE-------------------VMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
             K G++L+                    ++L+  ++       V  +N LIRG C  G 
Sbjct: 304 ARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGK 363

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A +  N+L  K LV D V+ NI+IH    EG + K       M  N    D+ T N 
Sbjct: 364 TDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNI 423

Query: 355 LM 356
           L+
Sbjct: 424 LL 425



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 11/200 (5%)

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           ++TY  L+ G C  GK++ AI + D M     +PDV +Y+ LI+G  K     E   +  
Sbjct: 137 VWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLE 196

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
           EM   G            V P   T NI +    K G + E  +    +  S        
Sbjct: 197 EMKSRG-----------GVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFT 245

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N++I G CK G    A  + ++++ K L  D+   N ++H L  E + ++   L +   
Sbjct: 246 YNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKAR 305

Query: 342 ENGCALDVDTFNTLMISFLQ 361
           + G  LD  T+ TL++ + +
Sbjct: 306 KRGYILDEVTYGTLIMGYFK 325



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 134/341 (39%), Gaps = 68/341 (19%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L++VT+ +LI G+        A +L ++M   G  P+V + + LI GL  +G  +  +  
Sbjct: 311 LDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDK 370

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
             E++       G+    V C   +I G C + +VD+                       
Sbjct: 371 LNELLE-----KGLVPDEVSC-NIIIHGYCWEGMVDK----------------------- 401

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
               A +    M+     P IFT   LL G C V  +  A  LF+S   K    DV +Y+
Sbjct: 402 ----AFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQNSVDVVTYN 457

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            +I+  CK   ++EA ++  +M +  F+            P+ +T N  +  L   G   
Sbjct: 458 TMISYLCKEGRLDEAFDLMTDMEVKKFE------------PDQYTYNAIVRALTHAGRTE 505

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           E  +    L  +   +                  + + EL       +  +D++ Y+  I
Sbjct: 506 EAEKFMSKLSETGQAV---------------KTHDTSQEL-------DASSDIM-YSQQI 542

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             L  +G+ K+   L    E+ G +L+  T+  LM  FL++
Sbjct: 543 SDLCTQGKYKEAMKLFQESEQKGVSLNKYTYIKLMDGFLKR 583


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 159/334 (47%), Gaps = 26/334 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N ++K +  EG + +A   ++KM   G  P+  T +TLI G  + G ++   ++ 
Sbjct: 386 NAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMM 445

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
            EM        G+ K N     +++  LC +R +D    L      +G     ++  TL+
Sbjct: 446 DEMSRK-----GL-KMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLI 499

Query: 138 C---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K  K VEA +L + M ++ + P I TY  ++ G C  GK + +I   + +   G +
Sbjct: 500 MGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLV 559

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +Y+ +I GYC+   VE+A     +M+   FK            P+ FTCNI + GL
Sbjct: 560 PDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFK------------PDLFTCNILLRGL 607

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G + + ++LF T       +    +N++I G CK   FE A +L  ++  K L  D 
Sbjct: 608 CTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDC 667

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             YN ++ AL   G++K+    +  + E G   D
Sbjct: 668 YTYNAILSALADAGRMKEAEEFMSRIVEQGKLQD 701



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 173/378 (45%), Gaps = 50/378 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TFN L+ G+C  G +++A+Q++  MA     P+V T + LI GL + G ++   +L 
Sbjct: 281 NRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLK 340

Query: 83  QEM---------------VNGMGD--------------FGGIYKPNVFCYGSLIDGLCKD 113
            EM               +NG  D               G   KPN   Y  ++    K+
Sbjct: 341 DEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKE 400

Query: 114 RLVDQTKDLFMEMKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTY 165
             +D   +   +M++ G +      NTL+   CK  +L EA R+++ M ++GL     T 
Sbjct: 401 GKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTL 460

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             +L+  C   K++ A  L  S +++G+  D  SY  LI GY K+    EAM        
Sbjct: 461 NTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAM-------- 512

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
               K+++EMK   ++P   T N  I GLC +G   + ++    L  S        +N++
Sbjct: 513 ----KLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTI 568

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G C+ G  E A +  NK+  K+   D+   NIL+  L  EG + K   L  +    G 
Sbjct: 569 ILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGK 628

Query: 346 ALDVDTFNTLMISFLQKE 363
           A+D  T+NT+ IS L KE
Sbjct: 629 AIDAVTYNTI-ISGLCKE 645



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 168/369 (45%), Gaps = 36/369 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V  ++ I  +        A+Q+  +M     +PN+ TC+TLI  L R  +   ++ L + 
Sbjct: 140 VILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPS-KPSVYLSKA 198

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLL-- 137
           + + +   G   K N   +  LI G C +  + +   L  +MKD       ++ NT+L  
Sbjct: 199 IFSDVIKLG--VKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDV 256

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CKK KL EA  LL  M   GL P   T+  L++GYC +G +  A  + D MA+   +PD
Sbjct: 257 LCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPD 316

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM------------------------ILNGFKKIF 232
           V++Y++LI G CK+  ++EA  +  EM                         L GF ++ 
Sbjct: 317 VWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGF-ELI 375

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           ++M+   V P   T N+ +    K G +         +E S        FN+LI G CK 
Sbjct: 376 DKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKA 435

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G    A  + +++S K L  + V  N ++H L  E ++     LL S  + G  +D  ++
Sbjct: 436 GRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSY 495

Query: 353 NTLMISFLQ 361
            TL++ + +
Sbjct: 496 GTLIMGYFK 504



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 37/235 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N++I G C  G    +   + ++   G  P+ TT +T+I G  R G +    + H +
Sbjct: 528 ITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNK 587

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           MV         +KP++F    L+ GLC + ++D+   LF     KG     +  NT+   
Sbjct: 588 MVKKS------FKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISG 641

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM-- 194
           LCK+ +  EA  LL  M ++ L P  +TY  +L+     G++  A      +  +G +  
Sbjct: 642 LCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQD 701

Query: 195 ---------------------PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
                                P+  ++S  IN  C     ++AM++ +E    G 
Sbjct: 702 QTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGI 756



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 48/264 (18%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A     S  +R Y  +++V++ +LI G+  +G   +A +L  +M      P++ T 
Sbjct: 472 KLDDAYKLLSSASKRGYF-VDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITY 530

Query: 63  DTLITGLRRTGNMNLTL-KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
           +T+I GL  +G  + ++ KL++ + +G+        P+   Y ++I G C++  V++   
Sbjct: 531 NTMIGGLCHSGKTDQSIDKLNELLESGL-------VPDETTYNTIILGYCREGQVEK--- 580

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
                                   A +    M+++   P +FT   LL G C  G ++ A
Sbjct: 581 ------------------------AFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKA 616

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           + LF++   KG   D  +Y+ +I+G CK    EEA ++  EM          E KL    
Sbjct: 617 LKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEM---------EEKKLG--- 664

Query: 242 PETFTCNIFIDGLCKNGHVLEVME 265
           P+ +T N  +  L   G + E  E
Sbjct: 665 PDCYTYNAILSALADAGRMKEAEE 688



 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 18/142 (12%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F ++I +  + ++ VT+N++I G C E    +A  L+ +M      P+  T + ++
Sbjct: 616 ALKLFNTWISKG-KAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAIL 674

Query: 67  TGLRRTGNM-----------------NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109
           + L   G M                 + T+ L++  +    +      PN   +   I+ 
Sbjct: 675 SALADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINE 734

Query: 110 LCKDRLVDQTKDLFMEMKDKGI 131
           LC          +  E   KGI
Sbjct: 735 LCTQGKYKDAMHMVQESTQKGI 756


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 167/346 (48%), Gaps = 45/346 (13%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            ++R   P N VT+N LI   C EG++R+A  L  +M   G  P+V T +TLI GL    
Sbjct: 246 MVQRGLEP-NVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVL 304

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            M+  + L +EM+ G      + +P+V  + S+I GLCK                     
Sbjct: 305 EMDGAMGLLEEMIQG----DTLVEPDVVTFNSVIHGLCK--------------------- 339

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                   ++ +A  + E+M +RG    + TY  L+ G+  V KVN+A+ L   +   G 
Sbjct: 340 ------IGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGL 393

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD F+YS+LING+ K + V+ A    R M   G +      +L + +P        +  
Sbjct: 394 EPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRA-----ELFHYIP-------LLAA 441

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LC+ G + + M LF  +++ NC L    +++++ G CK G  + A +L   +  + L  D
Sbjct: 442 LCQLGMMEQAMVLFNEMDM-NCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPD 500

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            V Y+ILI+   K G +++   +L  M  +G   DV  F++L+  +
Sbjct: 501 AVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGY 546



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 159/350 (45%), Gaps = 25/350 (7%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N V++  +++G C      +A  L++ M   G R +V T  TLI GL     ++  L
Sbjct: 112 RP-NAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGAL 170

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +L  EM       G    PNV  Y  L+ G C+         +F EM   G+  + +   
Sbjct: 171 ELLGEMC------GSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFT 224

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCKK ++ +A ++ ++M+QRGL P + TY  L+N  C  G V  A+AL + M  K
Sbjct: 225 GFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDK 284

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PDV +Y+ LI G      ++ AM +  EMI               V P+  T N  I
Sbjct: 285 GVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGD----------TLVEPDVVTFNSVI 334

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
            GLCK G + + + +   +    C   +  +N LI G  +     +A  L ++L    L 
Sbjct: 335 HGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLE 394

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            D   Y+ILI+   K  ++ +    L +M + G   ++  +  L+ +  Q
Sbjct: 395 PDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQ 444



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 138/304 (45%), Gaps = 29/304 (9%)

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
           RR G++   L L  +M     +     +PN   Y  ++ GLC  R  D+   L   M+  
Sbjct: 88  RRGGDLRQALSLLADMSR---EAHPAARPNAVSYTMVMRGLCASRRTDEAVALLRSMQAS 144

Query: 130 GINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           G+ A+ +        LC   +L  A  LL  M   G++P +  Y+ LL GYC  G+    
Sbjct: 145 GVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDV 204

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             +F+ M+R G  PDV  ++  I+  CK   + +A+ V   M+  G +            
Sbjct: 205 SKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLE------------ 252

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE- 300
           P   T N+ I+ LCK G V E + L   ++       V  +N+LI G    G+ E+    
Sbjct: 253 PNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLS--GVLEMDGAM 310

Query: 301 --LFNKLSCKNLV-ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
             L   +    LV  DVV +N +IH L K G++++   +   M E GC  ++ T+N L+ 
Sbjct: 311 GLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIG 370

Query: 358 SFLQ 361
            FL+
Sbjct: 371 GFLR 374



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 106/241 (43%), Gaps = 48/241 (19%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFNS+I G C  G +R A  + + MA  GC  N+ T + LI G  R   +N+ + L  E
Sbjct: 328 VTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSE 387

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA----------- 133
           +++      G+ +P+ F Y  LI+G  K   VD+ +     M  +GI A           
Sbjct: 388 LISS-----GL-EPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAA 441

Query: 134 ----------------------------NTLL---CKKTKLVEANRLLELMMQRGLNPVI 162
                                       +T++   CK   +  A +LL+ M+  GL P  
Sbjct: 442 LCQLGMMEQAMVLFNEMDMNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDA 501

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            TY+ L+N +  +G +  A  +   MA  GF+PDV  +  LI GY     + + +++  E
Sbjct: 502 VTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHE 561

Query: 223 M 223
           M
Sbjct: 562 M 562



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 84/209 (40%), Gaps = 17/209 (8%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A   L ++++RG          LLN       V  A +L  ++     + D  SY++++ 
Sbjct: 32  AAPFLAVLLRRGRADA----AALLNRRLRAAPVTEACSLLSALPD---VRDAVSYNIVLA 84

Query: 206 GYCKNF-NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
             C+   ++ +A+++  +M                  P   +  + + GLC +    E +
Sbjct: 85  ALCRRGGDLRQALSLLADMSREAHPA---------ARPNAVSYTMVMRGLCASRRTDEAV 135

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            L  +++ S     V  + +LIRG C     + A EL  ++    +  +V+ Y+ L+   
Sbjct: 136 ALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGY 195

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFN 353
            + G+ +  + +   M   G   DV  F 
Sbjct: 196 CRSGRWQDVSKVFEEMSRLGVEPDVIMFT 224


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 166/344 (48%), Gaps = 26/344 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N LI+G      + +A  + + +    C  +  T   L+ GL + G +N  L + +E
Sbjct: 335 VSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEE 394

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC------ 138
             NG GD       + F Y S+I+GLC++  +D+   +  +M   G   N  +C      
Sbjct: 395 AENGRGDL------DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVING 448

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             + +KL +A R    M+ +G  P + TY  L+NG     + + A AL   M +KG+ P+
Sbjct: 449 FVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPN 508

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +YS+L+NG C+   ++ A+N+  + +  GFK            P+    NI I GLC 
Sbjct: 509 MITYSLLMNGLCQGKKLDMALNLWCQALEKGFK------------PDVKMHNIIIHGLCS 556

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V + ++L+  ++  NC   +   N+L+ G  K   FE AS++++ +    L  D+++
Sbjct: 557 SGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIIS 616

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           YNI +  L    +I      L    + G      T+N L+  +L
Sbjct: 617 YNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGYL 660



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 30/336 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++NSL+          +A        T G  PN+ T + LI    R    +      +E+
Sbjct: 91  SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKA----KEL 146

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           +N M  +G  + P+VF YG+LI+ L K+  +     LF EM ++G+  +           
Sbjct: 147 LNWM--WGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGF 204

Query: 138 CKKTKLVEANRLLELMMQ-RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            KK  ++ A+ + E +++   + P I +Y  ++NG C  GK + +  ++  M +     D
Sbjct: 205 FKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQD 264

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           +++YS LI+G C + N++ A  V +EM  NG            V P+    N  ++G  +
Sbjct: 265 LYTYSTLIHGLCGSGNLDGATRVYKEMAENG------------VSPDVVVYNTMLNGYLR 312

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E +EL+  +E   C   V  +N LIRG  +    + A  ++  L  K+  AD + 
Sbjct: 313 AGRIEECLELWKVMEKEGCRTVVS-YNILIRGLFENAKVDEAISIWELLPEKDCCADSMT 371

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           Y +L+H L K G + K    +L   ENG   D+DTF
Sbjct: 372 YGVLVHGLCKNGYLNKA-LSILEEAENGRG-DLDTF 405



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 136/268 (50%), Gaps = 20/268 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANR 148
           +P +  Y SL++ L +    D+ +  F+  +  G++ N         + C+K +  +A  
Sbjct: 86  QPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKE 145

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           LL  M  +G +P +F+Y  L+N     G ++ A+ LFD M  +G  PDV  Y++LI+G+ 
Sbjct: 146 LLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFF 205

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K  ++  A  +  E +L G           +V P   + N+ I+GLCK G   E  E++ 
Sbjct: 206 KKGDILNASEI-WERLLKG----------PSVYPNIPSYNVMINGLCKCGKFDESFEIWH 254

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            ++ +     +  +++LI G C  G  + A+ ++ +++   +  DVV YN +++   + G
Sbjct: 255 RMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAG 314

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
           +I++   L   ME+ GC   V ++N L+
Sbjct: 315 RIEECLELWKVMEKEGCR-TVVSYNILI 341



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 162/362 (44%), Gaps = 37/362 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++ +LI      G + DA +L  +M   G  P+V   + LI G  + G++    ++ + +
Sbjct: 161 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 220

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK--DKGINANTL------L 137
           + G   +     PN+  Y  +I+GLCK    D++ +++  MK  ++G +  T       L
Sbjct: 221 LKGPSVY-----PNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGL 275

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C    L  A R+ + M + G++P +  Y  +LNGY   G++   + L+  M ++G    V
Sbjct: 276 CGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TV 334

Query: 198 FSYSVLINGYCKNFNVEEAMNVS-----------------------REMILNGFKKIFNE 234
            SY++LI G  +N  V+EA+++                        +   LN    I  E
Sbjct: 335 VSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEE 394

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
            +      +TF  +  I+GLC+ G + EV  +   +    C+    + N++I G  +   
Sbjct: 395 AENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASK 454

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A   F  +  K     VV YN LI+ L K  +  +   L+  M + G   ++ T++ 
Sbjct: 455 LEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSL 514

Query: 355 LM 356
           LM
Sbjct: 515 LM 516



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 135/302 (44%), Gaps = 45/302 (14%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+   ++S+I G C EG + + + ++ +M   GC+PN   C+ +I G  R   +   L+ 
Sbjct: 402 LDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRF 461

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
              MV+  G F     P V  Y +LI+GL                            K  
Sbjct: 462 FGNMVSK-GCF-----PTVVTYNTLINGL---------------------------SKAE 488

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           +  EA  L++ M+Q+G  P + TY+ L+NG C   K+++A+ L+     KGF PDV  ++
Sbjct: 489 RFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHN 548

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           ++I+G C +  VE+A+            ++++EMK  N VP   T N  ++G  K     
Sbjct: 549 IIIHGLCSSGKVEDAL------------QLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFE 596

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
              +++  +     +  +  +N  ++G C       A    N    + ++   + +NIL+
Sbjct: 597 RASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILV 656

Query: 322 HA 323
             
Sbjct: 657 QG 658



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 167/370 (45%), Gaps = 38/370 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  ++N +I G C  G   ++ ++  +M       ++ T  TLI GL  +GN++   +++
Sbjct: 229 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVY 288

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----INANTL- 136
           +EM  NG+        P+V  Y ++++G  +   +++  +L+  M+ +G    ++ N L 
Sbjct: 289 KEMAENGVS-------PDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILI 341

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L +  K+ EA  + EL+ ++       TY  L++G C  G +N A+++ +        
Sbjct: 342 RGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGD 401

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFK---------KI 231
            D F+YS +ING C+   ++E   V  +M              ++NGF          + 
Sbjct: 402 LDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRF 461

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F  M      P   T N  I+GL K     E   L   +     +  +  ++ L+ G C+
Sbjct: 462 FGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQ 521

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               ++A  L+ +   K    DV  +NI+IH L   G+++    L   M++  C  ++ T
Sbjct: 522 GKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVT 581

Query: 352 FNTLMISFLQ 361
            NTLM  F +
Sbjct: 582 HNTLMEGFYK 591



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 50/242 (20%)

Query: 157 GLNPVIFTYTPLLNGY-----------------------------------CLVGKVNVA 181
           G  P I +Y  LLN                                     C   + + A
Sbjct: 84  GCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKA 143

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             L + M  +GF PDVFSY  LIN   KN  + +A+            K+F+EM    V 
Sbjct: 144 KELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDAL------------KLFDEMPERGVT 191

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIAS 299
           P+    NI IDG  K G +L   E++  L +    ++  I  +N +I G CK G F+ + 
Sbjct: 192 PDVACYNILIDGFFKKGDILNASEIWERL-LKGPSVYPNIPSYNVMINGLCKCGKFDESF 250

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           E+++++       D+  Y+ LIH L   G +     +   M ENG + DV  +NT++  +
Sbjct: 251 EIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 310

Query: 360 LQ 361
           L+
Sbjct: 311 LR 312



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 22/195 (11%)

Query: 179 NVAIALFDSMAR-KGF--MPDVFSY--------SVLINGYCKNFNVEEAMNVSREMILNG 227
           + A+++FDS+ R  G+   P VF +         ++ + Y KN   ++A+++ + M    
Sbjct: 24  HSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHAYAKNSMPDQALDIFQRM---- 79

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                +E+  C   P   + N  ++ L ++    E    F   E       ++ +N LI+
Sbjct: 80  -----HEIFGCQ--PGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIK 132

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
             C+   F+ A EL N +  +    DV +Y  LI++L K G +     L   M E G   
Sbjct: 133 ISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTP 192

Query: 348 DVDTFNTLMISFLQK 362
           DV  +N L+  F +K
Sbjct: 193 DVACYNILIDGFFKK 207


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 161/354 (45%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 121 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+G CK+   D     
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAMLA-----SGV-QPDVYTYSVLINGXCKESKXD----- 229

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                                 +AN L + M+ +GL P    +T L++G+C  G+V++A+
Sbjct: 230 ----------------------DANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM   G K            P
Sbjct: 268 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C  G    A ++ 
Sbjct: 316 DKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 376 REMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 135 ECG------YPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K + A  LFD M  KG +P+  
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            ++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 249 XFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   +     +     + +LI GCCK G  + A E   ++  +N   D V Y 
Sbjct: 297 DLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L  EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 357 ALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V F +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 246 NXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD----LKQA 301

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             +++ M   G   KP+   Y +LIDG CK+  +D   +    M  +    + +      
Sbjct: 302 HHLIDEMSXKG--LKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALI 359

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC + + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G +
Sbjct: 360 SGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 420 PSVVTYNVLMNG 431


>gi|356517946|ref|XP_003527646.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 511

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 165/335 (49%), Gaps = 26/335 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +KV+ A++ F   IR  Y+P+   T N LI+G C  G I +A +L+K + +FGC P+V T
Sbjct: 156 NKVVDAVVLFRELIRLRYKPVT-YTVNILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVIT 214

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI GL     ++    L +E+        G + P+V  Y  +I G CK R +++   
Sbjct: 215 YNTLIHGLCLINEVDRARSLLREVC-----LNGEFAPDVVSYTMIISGYCKLRKMEEGSL 269

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF EM + G   NT           K   +  A  L   M+ +G  P + T+T L+NG+ 
Sbjct: 270 LFDEMINSGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHF 329

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
            V +V+ A+ ++  M  K     +++YSVL++G C N  + +A ++ R         + N
Sbjct: 330 RVRQVHQAMDMWHKMNEKNIGASLYTYSVLVSGLCNNNRLHKARDILR---------LLN 380

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           E    ++VP+ F  N  IDG CK+G+V E  ++   +E++ C+     F  LI G C  G
Sbjct: 381 E---SDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKG 437

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
               A   F+K+       D +  N L   L K G
Sbjct: 438 RMPEAIGFFDKMLAVGCAPDEITVNNLRSCLLKAG 472



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 159/383 (41%), Gaps = 64/383 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T++ L++  C       A  +   M   G  P+      L++     G ++++ +L  +
Sbjct: 73  LTYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVSSYAIVGRLDVSRELLAD 132

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-----KDKGINANTL-- 136
           +  N +G        N   Y  L + L +   V     LF E+     K      N L  
Sbjct: 133 VQCNNVG-------VNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILIR 185

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-FM 194
            LC+  ++ EA +LL+ +   G  P + TY  L++G CL+ +V+ A +L   +   G F 
Sbjct: 186 GLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLREVCLNGEFA 245

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV SY+++I+GYCK   +EE               +F+EM      P TFT N  IDG 
Sbjct: 246 PDVVSYTMIISGYCKLRKMEEG------------SLLFDEMINSGTAPNTFTFNALIDGF 293

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K G +   + L+  + +  C   V  F SLI G  +      A ++++K++ KN+ A +
Sbjct: 294 GKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASL 353

Query: 315 VAYNILIHALG-----------------------------------KEGQIKKENYLLLS 339
             Y++L+  L                                    K G + + N ++  
Sbjct: 354 YTYSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAE 413

Query: 340 MEENGCALDVDTFNTLMISFLQK 362
           ME N C  D  TF  L+I    K
Sbjct: 414 MEVNRCKPDKLTFTILIIGHCMK 436


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 160/327 (48%), Gaps = 26/327 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF+ LIK +   G +  A  +  +M   G +P+V T  T+I  L R G M+  +    E 
Sbjct: 400 TFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAM----EK 455

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            N M D G    P+ + Y  LI G C    + + K+L +E+ + G+  + +        L
Sbjct: 456 FNQMIDQG--VAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNL 513

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++++A  + +L +  G +P    Y+ L++GYCLVGK+  A+ +FD+M   G  P+V
Sbjct: 514 CKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 573

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             Y  L+NGYCK   ++E +++ REM+  G K            P T   NI IDGL   
Sbjct: 574 VVYGTLVNGYCKIGRIDEGLSLFREMLQKGIK------------PSTILYNIIIDGLFVA 621

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G  +     F  +  S   +    +N ++RG  K   F+ A  LF +L   N+  D++  
Sbjct: 622 GRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITL 681

Query: 318 NILIHALGKEGQIKKENYLLLSMEENG 344
           N +I  + +  ++++   L  S+  +G
Sbjct: 682 NTMIAGMFQTRRVEEAKDLFASISRSG 708



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 174/382 (45%), Gaps = 37/382 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTL 65
           AL  FG  +R   R ++ +  N L+KGFC      +A   L+ +    GC P+V +   L
Sbjct: 134 ALAFFGQLLRTGLR-VDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSIL 192

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L   G       L + M  G    G +  P+V  Y ++ID   K+  V++  DLF E
Sbjct: 193 LKSLCDQGKSGQADDLLRMMAEG----GAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKE 248

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M  +GI  + +        LCK   + +A   L  M+ +G+ P  +TY  L+ GY   G+
Sbjct: 249 MVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQ 308

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREM 223
              A+ +F  M R   +PDV + ++L+   CK   ++EA +V              S ++
Sbjct: 309 WKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKI 368

Query: 224 ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +LNG+           +F+ M    + P+ +T ++ I      G + + M +F  +    
Sbjct: 369 MLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHG 428

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            +  V  + ++I   C+ G  + A E FN++  + +  D  AY+ LI      G + K  
Sbjct: 429 VKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 488

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L+L +  NG  LD+  F++++
Sbjct: 489 ELILEIMNNGMRLDIVFFSSII 510



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 164/365 (44%), Gaps = 41/365 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V + ++I  F  EG++  A  L K+M   G  P++ T  +++  L +   M       ++
Sbjct: 224 VAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQ 283

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MVN      G+  P+ + Y +LI G        +   +F EM+   I  + +        
Sbjct: 284 MVNK-----GVL-PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGS 337

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+ EA  + + M  +G NP +F+Y  +LNGY   G +     LFD M   G  PD
Sbjct: 338 LCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 397

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
           ++++SVLI  Y     +++AM +  EM  +G K                       + FN
Sbjct: 398 IYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFN 457

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCK 291
           +M    V P+ +  +  I G C +G +L+  EL   LEI N  + ++I  F+S+I   CK
Sbjct: 458 QMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELI--LEIMNNGMRLDIVFFSSIINNLCK 515

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A  +F+         D V Y++L+      G+++K   +  +M   G   +V  
Sbjct: 516 LGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVV 575

Query: 352 FNTLM 356
           + TL+
Sbjct: 576 YGTLV 580



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 175/371 (47%), Gaps = 39/371 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++ T+N+LI G+   G  ++A ++ K+M      P+V T + L+  L + G     +K  
Sbjct: 292 DNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGK----IKEA 347

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLC-KDRLVDQTKDLFMEMKDKGINAN----TLL 137
           +++ + M   G    P+VF Y  +++G   K  LVD T DLF  M   GI  +    ++L
Sbjct: 348 RDVFDTMAMKG--QNPDVFSYKIMLNGYATKGCLVDMT-DLFDLMLGDGIAPDIYTFSVL 404

Query: 138 CKKTK----LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
            K       L +A  +   M   G+ P + TYT ++   C +GK++ A+  F+ M  +G 
Sbjct: 405 IKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGV 464

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-------FKKIFNEM-KLCNVV---- 241
            PD ++Y  LI G+C + ++ +A  +  E++ NG       F  I N + KL  ++    
Sbjct: 465 APDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQN 524

Query: 242 -----------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
                      P+    ++ +DG C  G + + + +F  +  +  E  V ++ +L+ G C
Sbjct: 525 IFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYC 584

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  +    LF ++  K +    + YNI+I  L   G+          M E+G A++  
Sbjct: 585 KIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKC 644

Query: 351 TFNTLMISFLQ 361
           T+N ++  F +
Sbjct: 645 TYNIVLRGFFK 655



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 125/272 (45%), Gaps = 23/272 (8%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANTL--------LCKKTKLVEANRL 149
           ++     L+ G C+ +  D+  D+ +    + G   +          LC + K  +A+ L
Sbjct: 149 DIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 208

Query: 150 LELMMQRGL--NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           L +M + G   +P +  YT +++ +   G VN A  LF  M ++G  PD+ +YS +++  
Sbjct: 209 LRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHAL 268

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK   + +A    R+M+  G            V+P+ +T N  I G    G   E + +F
Sbjct: 269 CKARAMGKAEAFLRQMVNKG------------VLPDNWTYNNLIYGYSSTGQWKEAVRVF 316

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +   +    V   N L+   CK+G  + A ++F+ ++ K    DV +Y I+++    +
Sbjct: 317 KEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATK 376

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           G +     L   M  +G A D+ TF+ L+ ++
Sbjct: 377 GCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAY 408



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 127/281 (45%), Gaps = 27/281 (9%)

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN-----ANTLL---CKKTKLVEA 146
           +  P    Y  L+D   +    +     F ++   G+      AN LL   C+  +  EA
Sbjct: 110 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEA 169

Query: 147 -NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM--PDVFSYSVL 203
            + LL    + G  P +F+Y+ LL   C  GK   A  L   MA  G +  PDV +Y+ +
Sbjct: 170 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTV 229

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I+ + K  +V +A ++ +EM+  G            + P+  T +  +  LCK    +  
Sbjct: 230 IDCFFKEGDVNKACDLFKEMVQRG------------IPPDLVTYSSVVHALCK-ARAMGK 276

Query: 264 MELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
            E F   ++ N  +  +   +N+LI G    G ++ A  +F ++   +++ DVV  N+L+
Sbjct: 277 AEAF-LRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLM 335

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +L K G+IK+   +  +M   G   DV ++  ++  +  K
Sbjct: 336 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATK 376



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 13/206 (6%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R L+P   TY  L++      +  +A+A F  + R G   D+   + L+ G+C+    +E
Sbjct: 109 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDE 168

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN- 274
           A+++           + +       VP+ F+ +I +  LC  G   +  +L   +     
Sbjct: 169 ALDI-----------LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA 217

Query: 275 -CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            C   V  + ++I    K G    A +LF ++  + +  D+V Y+ ++HAL K   + K 
Sbjct: 218 VCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKA 277

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
              L  M   G   D  T+N L+  +
Sbjct: 278 EAFLRQMVNKGVLPDNWTYNNLIYGY 303



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 14/181 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V ++ L+ G+C+ G +  A ++   M + G  PNV    TL+ G  + G ++  L L 
Sbjct: 537 DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLF 596

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM+       GI KP+   Y  +IDGL         K  F EM + GI  N        
Sbjct: 597 REMLQ-----KGI-KPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVL 650

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K     EA  L + +    +   I T   ++ G     +V  A  LF S++R G +
Sbjct: 651 RGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLV 710

Query: 195 P 195
           P
Sbjct: 711 P 711


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 166/372 (44%), Gaps = 49/372 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN + ++ L+   C  G + +A QL+ +M     +P++ T   LI GL + G +   ++L
Sbjct: 324 LNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQL 383

Query: 82  HQEMV--------------------NGMGDFGGIY---------KPNVFCYGSLIDGLCK 112
           ++EM                      GM     +Y         +P+V  Y  +IDG  K
Sbjct: 384 YKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVK 443

Query: 113 DRLVDQTKDLFMEMKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFT 164
              V++   L+  ++DK I       N+L+   CK  K+VEA RLLE +   GL P   T
Sbjct: 444 LGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVT 503

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           YT L+N YC  G +N    L   M  K   P V +Y+V+I G CK   +EE++       
Sbjct: 504 YTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESV------- 556

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                ++  +M+   + P+  T N  I   CK   + +  EL   + I N E     +N 
Sbjct: 557 -----QLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNV 611

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI G C++G  E A  +   L  +N+    VAY  +I A   +G  ++   +   M E G
Sbjct: 612 LIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKG 671

Query: 345 CALDVDTFNTLM 356
             + +  ++ ++
Sbjct: 672 FEVSIKDYSAVI 683



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 164/344 (47%), Gaps = 27/344 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+FN+++  +C  G    A      M  +G  P+  + + LI GL   G+M   L    E
Sbjct: 186 VSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEAL----E 241

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINAN----TLL-- 137
           + N M   G   +P++  Y  +  G     L+   +++  +M  D+G+  +    T+L  
Sbjct: 242 LTNDMEKQG--LQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLIC 299

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             C+   + EA RL   ++  G    +  Y+ LL+  C  G+V+ A+ L   M      P
Sbjct: 300 GHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQP 359

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D+ +YS+LI+G CK   V++A+ + +EM  N   +IF         P +F  +  + GLC
Sbjct: 360 DLVTYSILIHGLCKQGKVQQAIQLYKEMCFN---RIF---------PNSFAHSGILKGLC 407

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           + G + +    F +L +SN    V ++N +I G  K G  E A  L+ +L  K +   +V
Sbjct: 408 EKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIV 467

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +N LI+   K  ++ +   LL S++ +G      T+ TLM ++
Sbjct: 468 TFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAY 511



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 165/350 (47%), Gaps = 31/350 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +  T + ++ G C +   RDA   +++       P+V + +T+++   + G  ++   
Sbjct: 147 PQSARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKS 206

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
               M+     +G +  P+ + Y  LI GL     +++  +L  +M+ +G+  + +  K 
Sbjct: 207 FFCMMLK----YGIL--PDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKI 260

Query: 141 TK-------LVEANR--LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                    L+   R  + +++   GL P + TYT L+ G+C +G +  A+ L   +   
Sbjct: 261 VAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSS 320

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           GF  +V  YSVL++  CK   V+EA+            ++  EM+  N+ P+  T +I I
Sbjct: 321 GFQLNVILYSVLLSSLCKRGQVDEAL------------QLLYEMEANNLQPDLVTYSILI 368

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFEIASELFNKLSCKN 309
            GLCK G V + ++L+   E+    +F   F  + +++G C+ G+   A   F+ L   N
Sbjct: 369 HGLCKQGKVQQAIQLYK--EMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSN 426

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L  DV  YNI+I    K G +++   L   + +      + TFN+L+  F
Sbjct: 427 LRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGF 476



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 132/268 (49%), Gaps = 35/268 (13%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           +P++  Y SL+  L   R  D   D++ ++KD G   +          LC +++  +A  
Sbjct: 115 RPSIQTYNSLLYNL---RHTDIMWDVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDAVL 171

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
            L     +   P + ++  +++ YC +G  +VA + F  M + G +PD +SY++LI+G  
Sbjct: 172 FLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLI 231

Query: 209 KNFNVEEAMNVSREM-----------------------ILNGFKKIFNEMKLCN-VVPET 244
              ++EEA+ ++ +M                       +++G ++I  +M     + P+ 
Sbjct: 232 VAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDL 291

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T  + I G C+ G++ E + L   L  S  +L V +++ L+   CK G  + A +L  +
Sbjct: 292 VTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYE 351

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKK 332
           +   NL  D+V Y+ILIH L K+G++++
Sbjct: 352 MEANNLQPDLVTYSILIHGLCKQGKVQQ 379



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 14/182 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + +T+N++I+ FC   ++R A +L+  M      P   T + LI GL R G++    ++ 
Sbjct: 570 DQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVL 629

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
             + +   +   +       Y ++I   C      +   +F +M +KG   +        
Sbjct: 630 VSLQDRNINLTKV------AYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVI 683

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+  + EA     +M+  G++P    +  +LN +   G V+    L   M + G +
Sbjct: 684 NRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLL 743

Query: 195 PD 196
            D
Sbjct: 744 HD 745


>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
 gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
          Length = 864

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 182/396 (45%), Gaps = 71/396 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N++T+ ++I G+C  G++  A  L++ M      PNV T  ++I G  + G +++ +++ 
Sbjct: 295 NNITYTAMIDGYCKLGDMDGAESLLRDMEKKQVVPNVVTYSSIINGYTKKGMLDVAVRIM 354

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M++          PN + Y +LIDG  K    D   DL+ EMK  G+  N+       
Sbjct: 355 KKMLDQN------IMPNAYIYATLIDGHLKAGKQDAAVDLYNEMKLNGLEENSFIVDAFI 408

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L +  K+ EA  L + MM +GL      YT L++G+   G+ + A  + + MA  G  
Sbjct: 409 NNLKRGRKMEEAEGLCKYMMSKGLLLDRVNYTSLMDGFFKTGRESAAFTMAEKMAETGIK 468

Query: 195 PDVFSYSVLINGYCK--NFNVEEAMNVSREM-----------ILNGF---------KKIF 232
            DV +Y+VLING  +   ++ E   +  RE+           ++N +          K++
Sbjct: 469 FDVVAYNVLINGLLRLGKYDAESVYSGIRELGLAPDRATYNTMINAYCKQGKLENAIKLW 528

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGH------VLEVMELF---PTLEI--------SNC 275
           NEMK  +V+P + TCNI + GL K G       VL  M L+   P + I        S C
Sbjct: 529 NEMKGHSVMPNSITCNILVGGLSKAGETERAIDVLNEMLLWGICPNVTIHRALLNACSKC 588

Query: 276 ELF------------------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           E                     E++NSLI   C  G+ + A+ + N ++ + + AD V Y
Sbjct: 589 ERADTILQMHKRLVGMGLKANREVYNSLITVLCGLGMTKRATLVLNNMTKEGISADTVTY 648

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           N LIH   K   I+K       M   G +  + T+N
Sbjct: 649 NALIHGHFKSSHIEKALATYTQMLNEGVSPGIRTYN 684



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 179/372 (48%), Gaps = 40/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI  +C +  + +A  L ++M + G  P+V T  ++I GL + G +     L 
Sbjct: 155 NLVTYTTLISAYCKQHGLSEALSLYEEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALL 214

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC---- 138
           +EM + MG       PN   Y  L+D L K     ++     +M   G++ + ++C    
Sbjct: 215 REM-DKMG-----VNPNHVVYAILVDSLFKAGSAWESFIYQSQMIVCGVSFDLVVCTTLI 268

Query: 139 ----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K  K  EA  +   + +    P   TYT +++GYC +G ++ A +L   M +K  +
Sbjct: 269 DGLFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMIDGYCKLGDMDGAESLLRDMEKKQVV 328

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------I 231
           P+V +YS +INGY K   ++ A+ + ++M              +++G  K         +
Sbjct: 329 PNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQNIMPNAYIYATLIDGHLKAGKQDAAVDL 388

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCC 290
           +NEMKL  +   +F  + FI+ L K G  +E  E      +S   L   + + SL+ G  
Sbjct: 389 YNEMKLNGLEENSFIVDAFINNL-KRGRKMEEAEGLCKYMMSKGLLLDRVNYTSLMDGFF 447

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G    A  +  K++   +  DVVAYN+LI+ L + G+   E+ +   + E G A D  
Sbjct: 448 KTGRESAAFTMAEKMAETGIKFDVVAYNVLINGLLRLGKYDAES-VYSGIRELGLAPDRA 506

Query: 351 TFNTLMISFLQK 362
           T+NT++ ++ ++
Sbjct: 507 TYNTMINAYCKQ 518



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 148/343 (43%), Gaps = 48/343 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N LI  F   G +     L  +M + G  PNV T + L+    + G+++L L L + + 
Sbjct: 14  WNRLIYQFNATGLVSQVWDLYSEMLSCGVLPNVFTHNILVHAWCKMGHLSLALDLIRNV- 72

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-------- 138
               D       +   Y + I G C+  L +Q       M  K    ++  C        
Sbjct: 73  ----DI----DVDTVTYNTAIWGFCQQGLANQGFGFLSIMVKKDTFFDSFTCNILVKGFC 124

Query: 139 -----KKTKLVEANRLLELMMQRG---LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                K  + V  N + ++    G   L P + TYT L++ YC    ++ A++L++ M  
Sbjct: 125 RIGSVKYGEWVMDNLIDDMNDDDGTTNLEPNLVTYTTLISAYCKQHGLSEALSLYEEMIS 184

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG---------------FKK----- 230
            GF+PDV +YS +ING CK   + EA  + REM   G               FK      
Sbjct: 185 DGFLPDVVTYSSIINGLCKRGMLTEAKALLREMDKMGVNPNHVVYAILVDSLFKAGSAWE 244

Query: 231 --IF-NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
             I+ ++M +C V  +   C   IDGL K G   E   +F TL   NC      + ++I 
Sbjct: 245 SFIYQSQMIVCGVSFDLVVCTTLIDGLFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMID 304

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           G CK G  + A  L   +  K +V +VV Y+ +I+   K+G +
Sbjct: 305 GYCKLGDMDGAESLLRDMEKKQVVPNVVTYSSIINGYTKKGML 347



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 147/347 (42%), Gaps = 45/347 (12%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           S IR      +  T+N++I  +C +G + +A +L  +M      PN  TC+ L+ GL + 
Sbjct: 494 SGIRELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNILVGGLSKA 553

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
           G     + +  EM+       GI  PNV  + +L++   K    D    +   +   G+ 
Sbjct: 554 GETERAIDVLNEML-----LWGIC-PNVTIHRALLNACSKCERADTILQMHKRLVGMGLK 607

Query: 133 ANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           AN  +                           Y  L+   C +G    A  + ++M ++G
Sbjct: 608 ANREV---------------------------YNSLITVLCGLGMTKRATLVLNNMTKEG 640

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              D  +Y+ LI+G+ K+ ++E+A+    +M+  G            V P   T N+ + 
Sbjct: 641 ISADTVTYNALIHGHFKSSHIEKALATYTQMLNEG------------VSPGIRTYNLLLG 688

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GL   G + +  E+   ++ S  +    ++N+LI G  K G  + A + + ++  K LV 
Sbjct: 689 GLLAAGLMSKAYEILSKMKDSGLDPDASLYNTLISGHGKIGNKKEAIKFYCEMVTKGLVP 748

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
               YN+LI    K G++ +   LL  M+      +  T++ L+  +
Sbjct: 749 KTSTYNVLIEDFAKVGKMDQARELLNEMQVRRVPPNSSTYDILICGW 795



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 16/235 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   +NSLI   C  G  + A+ ++  M   G   +  T + LI G  ++ ++   L  +
Sbjct: 609 NREVYNSLITVLCGLGMTKRATLVLNNMTKEGISADTVTYNALIHGHFKSSHIEKALATY 668

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
            +M+N      G+  P +  Y  L+ GL    L+ +  ++  +MKD G++      NTL+
Sbjct: 669 TQMLNE-----GV-SPGIRTYNLLLGGLLAAGLMSKAYEILSKMKDSGLDPDASLYNTLI 722

Query: 138 CKKTKL---VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K+    EA +    M+ +GL P   TY  L+  +  VGK++ A  L + M  +   
Sbjct: 723 SGHGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLIEDFAKVGKMDQARELLNEMQVRRVP 782

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP--ETFTC 247
           P+  +Y +LI G+C      E   +S++      + +F EM     VP   T  C
Sbjct: 783 PNSSTYDILICGWCNLSKQPELDRISKKTYRTEARTLFAEMNEKGFVPCENTLAC 837



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 28/213 (13%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P +  +  L+  +   G V+    L+  M   G +P+VF++++L++ +CK  ++  A+++
Sbjct: 9   PTLPLWNRLIYQFNATGLVSQVWDLYSEMLSCGVLPNVFTHNILVHAWCKMGHLSLALDL 68

Query: 220 SREMILNGFKKIFN-------EMKLCN-------------VVPETFTCNIFIDGLCKNGH 259
            R + ++     +N       +  L N                ++FTCNI + G C+ G 
Sbjct: 69  IRNVDIDVDTVTYNTAIWGFCQQGLANQGFGFLSIMVKKDTFFDSFTCNILVKGFCRIGS 128

Query: 260 VLEVMELFPTL--------EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           V     +   L          +N E  +  + +LI   CK      A  L+ ++     +
Sbjct: 129 VKYGEWVMDNLIDDMNDDDGTTNLEPNLVTYTTLISAYCKQHGLSEALSLYEEMISDGFL 188

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            DVV Y+ +I+ L K G + +   LL  M++ G
Sbjct: 189 PDVVTYSSIINGLCKRGMLTEAKALLREMDKMG 221


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 182/374 (48%), Gaps = 55/374 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+NSL+   C EG + +A+ L +KM   G  P   + +++I G  R GN+++   + 
Sbjct: 452 NIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVF 511

Query: 83  QEMVN-GMGDFGGIYKPNVFCYGSLIDGLCK-----------DRLVDQ---TKDLFMEMK 127
            +M++ G+       KPNV  Y  L+DG  K           DR+VD+     D    +K
Sbjct: 512 SDMLDCGL-------KPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIK 564

Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
             G      LCK  +  EA  +L+  +++G  PV  TY  +++G+   G V+ A+  +  
Sbjct: 565 ING------LCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYRE 618

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK--- 230
           M   G  P+V +Y+ LING+CKN N + A+ +  EM              +++GF K   
Sbjct: 619 MCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQD 678

Query: 231 ------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL--EISNCELFVEIF 282
                 +F+E+    + P +   N  I G     ++   + L   +  E  +C+L  + +
Sbjct: 679 IETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDL--QTY 736

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
            +LI G  K G   +A +L++++S K ++ D++ Y +LI+ L  +GQ++    +L  ME 
Sbjct: 737 TTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMER 796

Query: 343 NGCALDVDTFNTLM 356
           +    +V  +N L+
Sbjct: 797 DSITPNVPIYNALI 810



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 166/379 (43%), Gaps = 36/379 (9%)

Query: 2   SKVLGALMAFGSFIR---------RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMAT 52
           + V+GA +  G+ +           C   +N V   +L+KG+C +  +  A +   KM  
Sbjct: 318 TSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNE 377

Query: 53  FGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK 112
            G  PN  T   LI    + GNM     L+ +M N          P VF   SLI G  K
Sbjct: 378 NGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKN------ICPTVFIVNSLIRGFLK 431

Query: 113 DRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFT 164
               ++   LF E     I AN        + LCK+ K+ EA  L + M+ +GL P   +
Sbjct: 432 VESREEASKLFDEAVACDI-ANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVS 490

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  ++ G+C  G +++A ++F  M   G  P+V +YS+L++GY KN + E A  V     
Sbjct: 491 YNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYV----- 545

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
              F ++ +E    N+VP  FT NI I+GLCK G   E  ++               +NS
Sbjct: 546 ---FDRMVDE----NIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNS 598

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           ++ G  K G    A   + ++    +  +V+ Y  LI+   K         +   M   G
Sbjct: 599 IMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKG 658

Query: 345 CALDVDTFNTLMISFLQKE 363
             LD+  +  L+  F +K+
Sbjct: 659 LELDIAAYGALIDGFCKKQ 677



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 169/391 (43%), Gaps = 39/391 (9%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K++ AL  F         P N VT+  LI+  C  GN+  A  L  +M      P V   
Sbjct: 364 KLVSALEFFDKMNENGPSP-NRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIV 422

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           ++LI G  +  +     KL  E V    D       N+F Y SL+  LCK+  + +   L
Sbjct: 423 NSLIRGFLKVESREEASKLFDEAV--ACDIA-----NIFTYNSLLSWLCKEGKMSEATTL 475

Query: 123 FMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           + +M DKG     ++ N+++   C++  L  A  +   M+  GL P + TY+ L++GY  
Sbjct: 476 WQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFK 535

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI--- 231
            G    A  +FD M  +  +P  F+Y++ ING CK     EA ++ ++ +  GF  +   
Sbjct: 536 NGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLT 595

Query: 232 --------------------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                               + EM    V P   T    I+G CKN +    +++   + 
Sbjct: 596 YNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMR 655

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
               EL +  + +LI G CK    E AS LF++L    L  + V YN LI        ++
Sbjct: 656 NKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNME 715

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFLQK 362
               L   M   G + D+ T+ TL+   L++
Sbjct: 716 AALNLQKRMLGEGISCDLQTYTTLIDGLLKE 746



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 152/326 (46%), Gaps = 31/326 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +D T+N  I G C  G   +A  ++KK    G  P   T ++++ G  + G+++  L  +
Sbjct: 557 SDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAY 616

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM        G+  PNV  Y +LI+G CK+   D    +  EM++KG+  +        
Sbjct: 617 REMCES-----GV-SPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALI 670

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CKK  +  A+ L   ++  GL+P    Y  L++GY  +  +  A+ L   M  +G  
Sbjct: 671 DGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGIS 730

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D+ +Y+ LI+G  K   +  A+++  EM   G            ++P+     + I+GL
Sbjct: 731 CDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKG------------IIPDIIIYTVLINGL 778

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G +    ++   +E  +    V I+N+LI G  K G  + A  L N++  K L  + 
Sbjct: 779 CGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPND 838

Query: 315 VAYNILIHALGKEGQIKKENYLLLSM 340
             Y+ILI+     G+IK  N  L S+
Sbjct: 839 TTYDILIN-----GKIKGGNSALKSL 859



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 127/289 (43%), Gaps = 62/289 (21%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           F+ + + P+  +T+NS++ GF  EG++  A    ++M   G  PNV T  TLI G  +  
Sbjct: 584 FVEKGFVPVC-LTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNN 642

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
           N +L LK+  EM N   +       ++  YG+LIDG CK + ++    LF E+ D G++ 
Sbjct: 643 NTDLALKMRNEMRNKGLEL------DIAAYGALIDGFCKKQDIETASWLFSELLDGGLSP 696

Query: 134 NTL-------------------------------------------LCKKTKLVEANRLL 150
           N++                                           L K+ +LV A  L 
Sbjct: 697 NSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLY 756

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             M  +G+ P I  YT L+NG C  G++  A  +   M R    P+V  Y+ LI G+ K 
Sbjct: 757 SEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKA 816

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
            N++EA  +  EM+  G            + P   T +I I+G  K G+
Sbjct: 817 GNLQEAFRLHNEMLDKG------------LTPNDTTYDILINGKIKGGN 853



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 123/274 (44%), Gaps = 23/274 (8%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANR 148
           K +   Y  +I   CK+  V+    L  +M+DKG   +            K+  +VEA R
Sbjct: 276 KLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALR 335

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L + M+  G+   +   T L+ GYC   K+  A+  FD M   G  P+  +Y+VLI   C
Sbjct: 336 LKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCC 395

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           KN N+ +A +            ++ +MK  N+ P  F  N  I G  K     E  +LF 
Sbjct: 396 KNGNMAKAYD------------LYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFD 443

Query: 269 TLEISNCELF-VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             E   C++  +  +NSL+   CK G    A+ L+ K+  K L    V+YN +I    ++
Sbjct: 444 --EAVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQ 501

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           G +     +   M + G   +V T++ LM  + +
Sbjct: 502 GNLDMAASVFSDMLDCGLKPNVITYSILMDGYFK 535



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           T L K   + EA  + E M+ +G++   FT   ++           A   F     +G  
Sbjct: 217 TALVKNDMIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVK 276

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  +YS++I  +CKN +VE A  + ++M   G+            VP   T    I   
Sbjct: 277 LDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGW------------VPSEGTFTSVIGAC 324

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K G+++E + L   +     ++ V +  +L++G CK      A E F+K++      + 
Sbjct: 325 VKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNR 384

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           V Y +LI    K G + K   L   M+       V   N+L+  FL+ E
Sbjct: 385 VTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVE 433



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+LI G    GN+++A +L  +M   G  PN TT D LI G  + GN  L   L  +  
Sbjct: 806 YNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGGNSALKSLLSLKFK 865

Query: 87  NGMG 90
           +G G
Sbjct: 866 DGKG 869


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 168/340 (49%), Gaps = 30/340 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V FN LI   C +G++  AS+LV  M   GC PN  T ++L+ GL   G ++  + L 
Sbjct: 244 NPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLL 303

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL----- 136
             MV           PN   +G+L+DG  K  R +D  + + + +++KG   N       
Sbjct: 304 NRMV------ANKCVPNDITFGTLVDGFVKHGRALDGVR-VLVSLEEKGYRGNEFSYSSL 356

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L K+ K     +L + M+++G  P    Y+ L++G C  GK + A      M  KG 
Sbjct: 357 ISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGH 416

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+ F+YS L+ GY +  ++ +A+ V +EM  N      N  ++C         +I I+G
Sbjct: 417 TPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDND----CNHHEVCY--------SILING 464

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN--LV 311
           LCKNG + E + ++  +     +L V  ++S+I G C   + E   +LFN++ C N  L 
Sbjct: 465 LCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQ 524

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            DVV YNIL++A   +  + +   +L +M + GC  D  T
Sbjct: 525 PDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFIT 564



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 140/297 (47%), Gaps = 43/297 (14%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           F++ C    N+VT+NSL+ G C++G +  A  L+ +M    C PN  T  TL+ G  + G
Sbjct: 272 FLKGCVP--NEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHG 329

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
                +++    +  + + G  Y+ N F Y SLI GL K+   +    L+ EM +KG   
Sbjct: 330 RALDGVRV----LVSLEEKG--YRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKP 383

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           NT+        LC++ K  EA   L  M  +G  P  FTY+ L+ GY   G ++ AI ++
Sbjct: 384 NTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVW 443

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---------------- 229
             M           YS+LING CKN  ++EA+ V ++M+  G K                
Sbjct: 444 KEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNA 503

Query: 230 -------KIFNEMKLCN---VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
                  K+FN+M LC+   + P+  T NI ++  C    V   +++  T+    C+
Sbjct: 504 QLVEQGMKLFNQM-LCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCD 559



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 156/330 (47%), Gaps = 23/330 (6%)

Query: 41  RDASQLVKKM-ATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99
           + A  L  +M A F C+  V + +T++  + + G  +L L+ +  +++    F  I +PN
Sbjct: 117 QKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYNHVIDS-NSFSNI-QPN 174

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-----GINANTL---LCKKTKLVEANRLLE 151
              +  +I  LC+   VDQ  ++F  M D+     G   +TL   LC + ++ EA  LL+
Sbjct: 175 GLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLD 234

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            M   G  P    +  L++  C  G ++ A  L D+M  KG +P+  +Y+ L++G C   
Sbjct: 235 EMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKG 294

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            +++AM++   M+ N              VP   T    +DG  K+G  L+ + +  +LE
Sbjct: 295 KLDKAMSLLNRMVAN------------KCVPNDITFGTLVDGFVKHGRALDGVRVLVSLE 342

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
                     ++SLI G  K G  E   +L+ ++  K    + + Y+ LI  L +EG+  
Sbjct: 343 EKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPD 402

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +    L+ M+  G   +  T+++LM  + +
Sbjct: 403 EAKEYLIEMKNKGHTPNSFTYSSLMWGYFE 432



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 147/344 (42%), Gaps = 45/344 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L D++F SLI+ F    +     QL+ +M    C   V    + I   +  G  +L    
Sbjct: 63  LGDLSFYSLIENFSNSLDFTSLEQLLHQMK---CENRVFIEKSFIIMFKAYGKAHLP--- 116

Query: 82  HQEMVNGMGDFGGIY--KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139
            Q+ ++     G  +  K  V  + ++++ + ++   D    L +E  +  I++N+    
Sbjct: 117 -QKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFD----LALEFYNHVIDSNSF--- 168

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
                             + P   ++  ++   C VG V+ A+ +F  M+ +  + D ++
Sbjct: 169 ----------------SNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYT 212

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           YS L++G C    ++EA++            + +EM++    P     N+ I  LCK G 
Sbjct: 213 YSTLMHGLCNEGRIDEAVS------------LLDEMQVEGTFPNPVAFNVLISALCKKGD 260

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +    +L   + +  C      +NSL+ G C  G  + A  L N++     V + + +  
Sbjct: 261 LSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGT 320

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           L+    K G+      +L+S+EE G   +  ++++L IS L KE
Sbjct: 321 LVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSL-ISGLFKE 363



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 120/323 (37%), Gaps = 95/323 (29%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ND+TF +L+ GF   G   D  +++  +   G R N  +  +LI+GL + G     ++L 
Sbjct: 314 NDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLW 373

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EMV          KPN   Y +LIDGLC++   D+ K+  +EMK+KG   N+       
Sbjct: 374 KEMVEKGC------KPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLM 427

Query: 137 -------------------------------------LCKKTKLVEANRLLELMMQRG-- 157
                                                LCK  KL EA  + + M+ RG  
Sbjct: 428 WGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIK 487

Query: 158 -----------------------------------LNPVIFTYTPLLNGYCLVGKVNVAI 182
                                              L P + TY  LLN +C    V+ AI
Sbjct: 488 LDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAI 547

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFN-VEEAMNVSREMILN--------GFKKIFN 233
            + ++M  +G  PD  +  + +     N +  ++      E+++         G   I  
Sbjct: 548 DILNTMLDQGCDPDFITCDIFLKTLRDNMDPPQDGREFLDELVVRLIKRQRTVGASNIIE 607

Query: 234 EMKLCNVVPETFTCNIFIDGLCK 256
            M    ++P+  T  + +  LCK
Sbjct: 608 VMLQKFLLPKPSTWALAVQQLCK 630


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 162/347 (46%), Gaps = 28/347 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N  ++N +I   C  G +++A +L+ +M      P+V +  T+I G    G +   LKL
Sbjct: 256 WNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKL 315

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-- 138
             +M + G+       KPN + Y S+I  LCK     + + +  EM  + I  + ++   
Sbjct: 316 MDDMQIKGL-------KPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTT 368

Query: 139 ------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K   +  AN+  + M+ + ++P   TYT L+ G+   GKV     LF  M  +G
Sbjct: 369 LIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRG 428

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD  +Y+ LI+ YCK          + EM+ N F  + NEM    + P   T    ID
Sbjct: 429 LKPDEVTYTTLIDVYCK----------AGEMV-NAF-SLHNEMVQMGMTPNIVTYGALID 476

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK+G +    EL   +     +L V I+NS++ G CK G  E A +L  ++    +  
Sbjct: 477 GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDP 536

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           D + Y  +I A  + G I K + LL  M + G    V TFN LM  F
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF 583



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 165/337 (48%), Gaps = 27/337 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV+     F   I R  +P ++VT+ +LI  +C  G + +A  L  +M   G  PN+ T 
Sbjct: 413 KVIEPQNLFHEMISRGLKP-DEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTY 471

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI GL + G ++   +L  EM        G+ + NV  Y S+++G+CK   ++Q   L
Sbjct: 472 GALIDGLCKHGELDTANELLDEMRK-----KGL-QLNVCIYNSMVNGICKAGNIEQAIKL 525

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM+  GI+ + +         C+   + +A++LL+ M+ RGL P + T+  L+NG+C+
Sbjct: 526 MKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCM 585

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           +G +     L   M  KG +PD  +Y+ L+  +C    +  +MN +         KI+  
Sbjct: 586 LGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHC----IRNSMNTT--------TKIYKR 633

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+   V P++ T NI I G CK  ++ E   L+  +        V  +N+LI+   K   
Sbjct: 634 MRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRK 693

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
           F  A ELF ++    LVAD   YN  +    +EG ++
Sbjct: 694 FXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 156/337 (46%), Gaps = 26/337 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+ +LI+GF   G + +   L  +M + G +P+  T  TLI    + G M     LH E
Sbjct: 399 ITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNE 458

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           MV  MG       PN+  YG+LIDGLCK   +D   +L  EM+ KG+  N  +       
Sbjct: 459 MVQ-MG-----MTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNG 512

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   + +A +L++ M   G++P   TYT +++ YC +G ++ A  L   M  +G  P 
Sbjct: 513 ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPT 572

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +++VL+NG+C    +E+   +   M+  G            +VP+  T N  +   C 
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKG------------IVPDAITYNTLMKQHCI 620

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              +    +++  +           +N LI+G CK    + A  L+ ++  K  V  V +
Sbjct: 621 RNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTS 680

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           YN LI    K+ +  +   L   M  +G   D + +N
Sbjct: 681 YNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYN 717



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 165/340 (48%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+++++I G+C  G ++ A +L+  M   G +PN  T +++I  L + G      K+ +E
Sbjct: 294 VSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLRE 353

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M++          P+   Y +LI G  K   V      F EM  K I+ + +        
Sbjct: 354 MMSQK------IIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQG 407

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             +  K++E   L   M+ RGL P   TYT L++ YC  G++  A +L + M + G  P+
Sbjct: 408 FGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPN 467

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y  LI+G CK+  ++ A  +  EM   G      ++ +C         N  ++G+CK
Sbjct: 468 IVTYGALIDGLCKHGELDTANELLDEMRKKGL-----QLNVC-------IYNSMVNGICK 515

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G++ + ++L   +E++  +     + ++I   C+ G  + A +L  ++  + L   VV 
Sbjct: 516 AGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVT 575

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +N+L++     G ++  + LL  M E G   D  T+NTLM
Sbjct: 576 FNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLM 615



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 134/284 (47%), Gaps = 26/284 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI G C  G +  A++L+ +M   G + NV   ++++ G+ + GN+   +KL 
Sbjct: 467 NIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLM 526

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM     +  GI  P+   Y ++ID  C+   +D+   L  EM D+G+    +      
Sbjct: 527 KEM-----EVAGI-DPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C    L + +RLL  M+++G+ P   TY  L+  +C+   +N    ++  M  +G  
Sbjct: 581 NGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVA 640

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +Y++LI G+CK  N++EA  + +EMI  G+            VP   + N  I   
Sbjct: 641 PDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGY------------VPTVTSYNALIKRF 688

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            K     E  ELF  +         EI+N  +  C + G  EI 
Sbjct: 689 YKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEIT 732



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 165/384 (42%), Gaps = 61/384 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+NS+I   C  G   +A +++++M +    P+     TLI G  + G++    K  
Sbjct: 327 NRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWF 386

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL 137
            EM++          P+   Y +LI G  +   V + ++LF EM  +G+  +     TL+
Sbjct: 387 DEMLSKK------ISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI 440

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  ++V A  L   M+Q G+ P I TY  L++G C  G+++ A  L D M +KG  
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQ 500

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +V  Y+ ++NG CK  N+E+A+            K+  EM++  + P+  T    ID  
Sbjct: 501 LNVCIYNSMVNGICKAGNIEQAI------------KLMKEMEVAGIDPDAITYTTVIDAY 548

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + +  +L   +     +  V  FN L+ G C  G+ E    L   +  K +V D 
Sbjct: 549 CRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDA 608

Query: 315 VA-----------------------------------YNILIHALGKEGQIKKENYLLLS 339
           +                                    YNILI    K   +K+  +L   
Sbjct: 609 ITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKE 668

Query: 340 MEENGCALDVDTFNTLMISFLQKE 363
           M E G    V ++N L+  F +K 
Sbjct: 669 MIEKGYVPTVTSYNALIKRFYKKR 692



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 16/220 (7%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK-VNVAIALFDSMARKGFMPDVFSYS 201
           L EA +LL+ ++  GL   + +    L+      + + +AI +F      G   +  SY+
Sbjct: 206 LSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVF---CEYGISWNTTSYN 262

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           ++I   C+   V+EA             ++  +M   +  P+  + +  IDG C  G + 
Sbjct: 263 IIIYSLCRLGKVKEA------------HRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELK 310

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           + ++L   ++I   +     +NS+I   CK G    A ++  ++  + ++ D V Y  LI
Sbjct: 311 KALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLI 370

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           H   K G ++  N     M     + D  T+ TL+  F Q
Sbjct: 371 HGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQ 410


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 178/393 (45%), Gaps = 59/393 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKM--------ATFG-------------CRPNVTT 61
           N  T+  L++G C  G+ R   Q  ++M        +++              CRP + T
Sbjct: 416 NRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVT 475

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TL+TGL ++G +   L L + M+       G+  P+V  + S++DGLCK++ +    +
Sbjct: 476 YNTLVTGLSKSGMVRDALGLLEFMIES-----GL-SPDVITFNSVLDGLCKEQRILDAHN 529

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           +F    ++G   N +        L K  K+ EA +LL  M++ G      TY+ +++G  
Sbjct: 530 VFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLL 589

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---- 229
            VG++  A+ +   M   G +PD  +Y+ LI+G+ K   + EA+ + REM+  GF     
Sbjct: 590 KVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVV 649

Query: 230 -------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                              +I + M      P   T +  +DGLCK G V E +  F  +
Sbjct: 650 TYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 709

Query: 271 EISN-CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
                    V  +++LI G CK G  + A E   ++     + DVV ++ILI+ L   G+
Sbjct: 710 ARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGR 769

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           I     L   M E GC  D+  +N ++ ++  K
Sbjct: 770 IDTGLELFCGMAERGCKADIYAYNAMINAYCLK 802



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 182/415 (43%), Gaps = 77/415 (18%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF   + G    GN+  A +    M   G  PN  T D LI GL + G +++ L L ++ 
Sbjct: 213 TFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDK 272

Query: 86  VNGMGDFG------GIYK-----------------PNVFCYGSLIDGLCKDRLVDQTKDL 122
            +  G F       G+ +                 PNV C+ SL++GLC+ R VD+  +L
Sbjct: 273 NSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFEL 332

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQ-RGLNPVIFTYTPLLNGYC 173
           F  MK+ G +A+ +        LCK  ++ EA R +ELM +  G +P + T++ L+ G C
Sbjct: 333 FDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLC 392

Query: 174 LVGKVNVAIALFDSM-ARKGFMPDVFSYSVLINGYCKNFN-----------VEEAMNVSR 221
             G+VN A  +++ M A +G  P+ F+Y+ L+ G CK  +           +E     S 
Sbjct: 393 NAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSS 452

Query: 222 EMILNGFKKIFNEMKLCN---------------------------------VVPETFTCN 248
              ++  +  F  +++C                                  + P+  T N
Sbjct: 453 SWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFN 512

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             +DGLCK   +L+   +F       C   V  +++LI G  K    + A +L  K+   
Sbjct: 513 SVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVEL 572

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              A+ V Y+ ++  L K G+++    +L  M + GC  D  T+NTL+  F +++
Sbjct: 573 GCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQ 627



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 164/363 (45%), Gaps = 43/363 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N LI G C  G + DA    +K   FG RP V T  T+I GL R   ++   KL +E
Sbjct: 2   VTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE 61

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M       G    PN   Y +L++ L       +   L   M   G     +        
Sbjct: 62  MA------GRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKG 115

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK+ ++  A R+++ M+ RG  P +  +T LL+  C +G+V+ A   F  +   GF PD
Sbjct: 116 LCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPD 175

Query: 197 VFSYSVLINGYCKNFNVEEAMNV-----------------------SREMILNGFKKIFN 233
             +Y+ +++G  K   +E A  V                       S+   L G  + F+
Sbjct: 176 AVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFD 235

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            M    V P T T +  IDGLCK G +   + L   L   N +  +  F+SL+ G C+  
Sbjct: 236 SMPQTGVSPNTVTYDALIDGLCKAGKLDIALGL---LRDKNSQAGMFAFSSLLHGLCQAH 292

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A +L   + C   V +VV +N L++ L +  ++ +   L   M+E+GC+ DV T+N
Sbjct: 293 RLEEAIQLLKAMPC---VPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYN 349

Query: 354 TLM 356
            L+
Sbjct: 350 ILL 352



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 163/349 (46%), Gaps = 30/349 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N+LI GF     +R+A  L+++M   G  P+V T  TL  GL R+G  +  +   
Sbjct: 612 DAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAV--- 668

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTL----- 136
            E+++ M   G    PN   Y S++DGLCK   V +    F +M +D+ +  + +     
Sbjct: 669 -EILDYMAARG--CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSAL 725

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++ EA   LE M++ G  P + T++ L+NG C  G+++  + LF  MA +G 
Sbjct: 726 IDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGC 785

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             D+++Y+ +IN YC       A  +  EM  +G  K             T T  I I  
Sbjct: 786 KADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAK------------NTVTHGIVIKA 833

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LC N  + E +  F ++   +C   +  +N+LI         E A EL   +       D
Sbjct: 834 LCGNDRIDEAVSYFHSIP-EDCRDEIS-YNTLITSLVASRRSEQALELLRAMVADGGSPD 891

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              Y  ++  L K G  +    LL  M   G + D+ T+ T+MIS L K
Sbjct: 892 ACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTY-TIMISGLSK 939



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 164/343 (47%), Gaps = 33/343 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+L+     +G  ++A  L+++MA  GC P + T   +I GL + G +    ++ 
Sbjct: 70  NAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVV 129

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-----KDKGINANTL- 136
            EMV    D G  + P+V  +  L+  LC+   VD+    F ++         +  NT+ 
Sbjct: 130 DEMV----DRG--FVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMV 183

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K  +L  A  +L+L+ +   +P +FT+T  ++G    G +  A   FDSM + G  
Sbjct: 184 DGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVS 243

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y  LI+G CK   ++ A+ + R+                N     F  +  + GL
Sbjct: 244 PNTVTYDALIDGLCKAGKLDIALGLLRDK---------------NSQAGMFAFSSLLHGL 288

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+   + E ++L   +    C   V  FNSL+ G C+    + A ELF+ +      ADV
Sbjct: 289 CQAHRLEEAIQLLKAMP---CVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADV 345

Query: 315 VAYNILIHALGKEGQIKKE-NYLLLSMEENGCALDVDTFNTLM 356
           + YNIL+  L K  +I +   ++ L     GC+ +V TF+TL+
Sbjct: 346 ITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLI 388



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 151/368 (41%), Gaps = 56/368 (15%)

Query: 3    KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            +V  AL  F    R      + + +++LI G C  G I +A + +++M   G  P+V T 
Sbjct: 698  RVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTF 757

Query: 63   DTLITGLRRTGNMNLTLKL---------------HQEMVNGM---GDFGGIYK------- 97
              LI GL   G ++  L+L               +  M+N     G+F   Y        
Sbjct: 758  SILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKT 817

Query: 98   ----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK---GINANTLLCKKTKLVEANR-- 148
                 N   +G +I  LC +  +D+    F  + +     I+ NTL+   T LV + R  
Sbjct: 818  HGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLI---TSLVASRRSE 874

Query: 149  ----LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                LL  M+  G +P    Y  +++G    G   VA  L   M  +G  PD+ +Y+++I
Sbjct: 875  QALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMI 934

Query: 205  NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
            +G  K   +  A +             F EM   N+ P+    +  ID  CK   V +  
Sbjct: 935  SGLSKAKQLPLACD------------YFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAW 982

Query: 265  ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            +L   L  S  E  + ++++++   CK    + A E+  ++  KN    +  +  L  A 
Sbjct: 983  KL---LRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAY 1039

Query: 325  GKEGQIKK 332
              EG++ +
Sbjct: 1040 VAEGRVDE 1047



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%)

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N LI G CK G    A   F K         VV Y+ +I  L ++ ++ K   LL  M 
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMA 63

Query: 342 ENGCALDVDTFNTLMISFLQK 362
             GCA +  T+NTL+ + L +
Sbjct: 64  GRGCAPNAVTYNTLVNALLGQ 84


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 27/347 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N++IK +C EG++  A +  + +   G  P   TC+ L+ G  RTG +     L 
Sbjct: 182 DTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLF 241

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             M+  MG      + N + Y  LI GLC+ + V +   LF+ MK  G + N        
Sbjct: 242 L-MMPLMG-----CQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLI 295

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ +A  L + M Q G+ P + TY  ++ GY  +G++N A+ + + M + G  
Sbjct: 296 SGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCH 355

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD ++Y+ LI G C     EEA     E++ N  K+ F         P   T    I+G 
Sbjct: 356 PDDWTYNTLIYGLCDQ-KTEEA----EELLNNAVKEGF--------TPTVVTFTNLINGY 402

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C      + + +   +  S C+L +++F  LI    K    + A EL N++S   LV +V
Sbjct: 403 CMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNV 462

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           + Y  +I    K G++     +L  ME +GC  +  T+N+LM   ++
Sbjct: 463 ITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVK 509



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 156/349 (44%), Gaps = 33/349 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+ S+I G+C  G +  A +++K M   GC+PN  T ++L+ GL +        KLH
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDK------KLH 514

Query: 83  QEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT----- 135
           + M  +  M   G I  PNV  Y +L+ G C +   D    LF  M+  G+  +      
Sbjct: 515 KAMALLTKMQKDGII--PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAV 572

Query: 136 ---LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  +  EA      ++++G+      YT L++G+   G  + A  L + M  +G
Sbjct: 573 LTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEG 629

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD ++YSVL++  CK   + EA+ +  +M L G K        C +    F   I ID
Sbjct: 630 CTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIK--------CTI----FAYTILID 677

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            + + G       ++  +  S  +     +   I   CK G  E A +L  K+  + +  
Sbjct: 678 EMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAP 737

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           DVV YNILI   G  G I +    L  M    C  +  T+  L+   L+
Sbjct: 738 DVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLK 786



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 172/372 (46%), Gaps = 47/372 (12%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N++I G+   G + DA ++ + M   GC P+  T +TLI GL      +   +  +E
Sbjct: 324 MTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL-----CDQKTEEAEE 378

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLC-----------KDRLVDQTKDLFMEMKDKGINA 133
           ++N     G  + P V  + +LI+G C           K++++     L +++  K IN+
Sbjct: 379 LLNNAVKEG--FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINS 436

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L KK +L EA  LL  +   GL P + TYT +++GYC  GKV++A+ +   M R G 
Sbjct: 437 ---LIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 493

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
            P+ ++Y+ L+ G  K+  + +AM +  +M  +G                         +
Sbjct: 494 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 553

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F  M+   + P+     +  D LCK G   E         ++  +++   + +LI G  
Sbjct: 554 LFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVY---YTTLIDGFS 610

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A+ L  ++  +    D   Y++L+HAL K+ ++ +   +L  M   G    + 
Sbjct: 611 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 670

Query: 351 TFNTLMISFLQK 362
            +  L+   L++
Sbjct: 671 AYTILIDEMLRE 682



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 149/347 (42%), Gaps = 31/347 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF +LI G+CM     DA ++  KM +  C+ ++     LI  L +       LK  +E
Sbjct: 393 VTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDR----LKEAKE 448

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++N +   G +  PNV  Y S+IDG CK   VD   ++   M+  G   N          
Sbjct: 449 LLNEISANGLV--PNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYG 506

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K  KL +A  LL  M + G+ P + TYT LL G C     + A  LF+ M + G  PD
Sbjct: 507 LVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPD 566

Query: 197 VFSYSVLINGYCKNFNVEEAMN-VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
             +Y+VL +  CK    EEA + + R+ +     K++                  IDG  
Sbjct: 567 EHAYAVLTDALCKAGRAEEAYSFIVRKGV--ALTKVYY--------------TTLIDGFS 610

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G+      L   +    C      ++ L+   CK      A  + +++S + +   + 
Sbjct: 611 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 670

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           AY ILI  + +EG+      +   M  +G      T+   + S+ ++
Sbjct: 671 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKE 717



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 149/344 (43%), Gaps = 33/344 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ ++  LI+G C    +R+A  L   M   GC PNV     LI+GL ++G +     L 
Sbjct: 252 NEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLF 311

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKG------INAN 134
             M  NG+        P+V  Y ++I G  K  R+ D  K    E+ +K          N
Sbjct: 312 DAMPQNGV-------VPSVMTYNAMIVGYSKLGRMNDALK--IKELMEKNGCHPDDWTYN 362

Query: 135 TL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           TL   LC + K  EA  LL   ++ G  P + T+T L+NGYC+  K + A+ + + M   
Sbjct: 363 TLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSS 421

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
               D+  +  LIN   K   ++EA            K++ NE+    +VP   T    I
Sbjct: 422 KCKLDLQVFGKLINSLIKKDRLKEA------------KELLNEISANGLVPNVITYTSII 469

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           DG CK+G V   +E+   +E   C+     +NSL+ G  K      A  L  K+    ++
Sbjct: 470 DGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGII 529

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
            +V+ Y  L+     E        L   ME+NG   D   +  L
Sbjct: 530 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVL 573



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 156/384 (40%), Gaps = 62/384 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+NSL+ G   +  +  A  L+ KM   G  PNV T  TL+ G     + +   +L 
Sbjct: 496 NAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLF 555

Query: 83  QEM-VNGMGDFGGIYK--PNVFC-----------------------YGSLIDGLCKDRLV 116
           + M  NG+      Y    +  C                       Y +LIDG  K    
Sbjct: 556 EMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNT 615

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           D    L   M D+G   ++         LCK+ +L EA  +L+ M  RG+   IF YT L
Sbjct: 616 DFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTIL 675

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           ++     GK + A  +++ M   G  P   +Y+V IN YCK   +E+A ++  +M   G 
Sbjct: 676 IDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREG- 734

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE----LFVEIFNS 284
                      V P+  T NI IDG    G++         +  ++CE     +  +   
Sbjct: 735 -----------VAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKH 783

Query: 285 LIRGCCKF-------GIF-----EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           L++G   +       G++     +I  +L  ++    L   V  Y+ LI    K G++++
Sbjct: 784 LLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEE 843

Query: 333 ENYLLLSMEENGCALDVDTFNTLM 356
              LL  M   G + + D +  L+
Sbjct: 844 ACLLLDHMCGKGLSPNEDIYTLLI 867



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 146/347 (42%), Gaps = 24/347 (6%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           SFI R    L  V + +LI GF   GN   A+ L+++M   GC P+  T   L+  L + 
Sbjct: 588 SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQ 647

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
             +N  L +  +M        GI K  +F Y  LID + ++   D  K ++ EM   G  
Sbjct: 648 KRLNEALPILDQM-----SLRGI-KCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHK 701

Query: 133 ANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            +           CK+ +L +A  L+  M + G+ P + TY  L++G   +G ++ A + 
Sbjct: 702 PSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFST 761

Query: 185 FDSMARKGFMPDVFSYSVLIN-------GYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
              M      P+ ++Y +L+         Y ++ +     N+   + L+   ++   M  
Sbjct: 762 LKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNL---IELDITWQLLERMVK 818

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             + P   T +  I G CK G + E   L   +         +I+  LI+ CC    FE 
Sbjct: 819 HGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEK 878

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           A    + +S       + +Y +L+  L  EG  +K   L   + E G
Sbjct: 879 ALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELG 925



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 12/209 (5%)

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           R+   ++Q GL P   TY  ++  YC  G +  A   F  +   G  P+ F+ + L+ GY
Sbjct: 169 RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGY 228

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C+   + +A  +   M L G ++  NE          ++  I I GLC+   V E + LF
Sbjct: 229 CRTGELRKACWLFLMMPLMGCQR--NE----------YSYTILIQGLCEAKCVREALVLF 276

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             ++   C   V  F  LI G CK G    A  LF+ +    +V  V+ YN +I    K 
Sbjct: 277 LMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKL 336

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
           G++     +   ME+NGC  D  T+NTL+
Sbjct: 337 GRMNDALKIKELMEKNGCHPDDWTYNTLI 365



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 12/176 (6%)

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           ++  + + G +PD  +Y+ +I  YCK  ++  A    R ++  G +            PE
Sbjct: 170 VYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLE------------PE 217

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
           TFTCN  + G C+ G + +   LF  + +  C+     +  LI+G C+      A  LF 
Sbjct: 218 TFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFL 277

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +       +V A+  LI  L K G++     L  +M +NG    V T+N +++ +
Sbjct: 278 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY 333


>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 805

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 167/361 (46%), Gaps = 39/361 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           + +  Y P N +T  +LIKG C+ G + +A      +   G   N  T   LI GL + G
Sbjct: 252 YFKMGYEP-NTITLTTLIKGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMG 310

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
                L++ +++       G +   NV  Y ++IDGLCKD+LV     L+ EM  K I  
Sbjct: 311 QTRAALQVLRQIE------GKLVNTNVVMYSTVIDGLCKDKLVIDAYGLYSEMIVKRIPP 364

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK-----------VNVAI 182
             +  K      A  L   M+ + +NP ++T+  L++  C  GK           V+ A+
Sbjct: 365 TVVTFK------AFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEAL 418

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            LF  M  K   P+  SY+ LI+G+CK+  +  A             K+ ++M+     P
Sbjct: 419 NLFTEMHCK---PNTVSYNTLIDGFCKSGRLSHAW------------KLLDQMRDRGQPP 463

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              T N  +  LCKN HV + + L    +    +  +  +N+L+ G CK G  + A  +F
Sbjct: 464 NVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIF 523

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             L  K        YNI+I+ L  EG + +   LL  ME+NGC  DV T+ T++ +  +K
Sbjct: 524 QDLLIKGYNLPTWTYNIMINGLCLEGLLDEAETLLSKMEDNGCIPDVVTYQTIIHALFEK 583

Query: 363 E 363
           +
Sbjct: 584 D 584



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 22/230 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKM--------ATFGCRPNVTTCDTLITGLRRTGN 74
           N  TFN L+   C +G I++A  ++ KM            C+PN  + +TLI G  ++G 
Sbjct: 386 NVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVSYNTLIDGFCKSGR 445

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA- 133
           ++   KL    ++ M D G    PNV  Y SL+  LCK+  VD+   L    KD+GI   
Sbjct: 446 LSHAWKL----LDQMRDRGQ--PPNVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPD 499

Query: 134 ----NTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
               NTL   LCK+ +L +A  + + ++ +G N   +TY  ++NG CL G ++ A  L  
Sbjct: 500 MHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEAETLLS 559

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
            M   G +PDV +Y  +I+   +    ++A  + RE+I+  F+K   +++
Sbjct: 560 KMEDNGCIPDVVTYQTIIHALFEKDENDKAEKLVRELIVRVFRKSPTDIR 609



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 108/258 (41%), Gaps = 64/258 (24%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVN--VAIALFDSMARKGFMPDVFSYSVLIN----- 205
           M+Q    P I  +  +L  Y +  K +    ++L   M  KG  PD+F+ S+LIN     
Sbjct: 196 MLQMRHTPSIVEFNKILT-YLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYYFK 254

Query: 206 ---------------GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
                          G C N  V EA+     ++  GF    N +          T  I 
Sbjct: 255 MGYEPNTITLTTLIKGLCLNGKVNEALLFHDHVLALGFH--LNHV----------TYGIL 302

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK-------FGIFE------- 296
           I+GLCK G     +++   +E       V +++++I G CK       +G++        
Sbjct: 303 INGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTVIDGLCKDKLVIDAYGLYSEMIVKRI 362

Query: 297 -------IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM--------E 341
                   A  LF+++  KN+  +V  +NIL+ AL K+G+IK+   +++ M         
Sbjct: 363 PPTVVTFKAFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFT 422

Query: 342 ENGCALDVDTFNTLMISF 359
           E  C  +  ++NTL+  F
Sbjct: 423 EMHCKPNTVSYNTLIDGF 440


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 162/347 (46%), Gaps = 28/347 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N  ++N +I   C  G +++A +L+ +M      P+V +  T+I G    G +   LKL
Sbjct: 256 WNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKL 315

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-- 138
             +M + G+       KPN + Y S+I  LCK     + + +  EM  + I  + ++   
Sbjct: 316 MDDMQIKGL-------KPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTT 368

Query: 139 ------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K   +  AN+  + M+ + ++P   TYT L+ G+   GKV     LF  M  +G
Sbjct: 369 LIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRG 428

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD  +Y+ LI+ YCK          + EM+ N F  + NEM    + P   T    ID
Sbjct: 429 LKPDEVTYTTLIDVYCK----------AGEMV-NAF-SLHNEMVQMGMTPNIVTYGALID 476

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK+G +    EL   +     +L V I+NS++ G CK G  E A +L  ++    +  
Sbjct: 477 GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDP 536

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           D + Y  +I A  + G I K + LL  M + G    V TFN LM  F
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF 583



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 157/337 (46%), Gaps = 26/337 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+ +LI+GF   G + +   L  +M + G +P+  T  TLI    + G M     LH E
Sbjct: 399 ITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNE 458

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           MV  MG       PN+  YG+LIDGLCK   +D   +L  EM+ KG+  N  +       
Sbjct: 459 MVQ-MG-----MTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNG 512

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   + +A +L++ M   G++P   TYT +++ YC +G ++ A  L   M  +G  P 
Sbjct: 513 ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPT 572

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +++VL+NG+C    +E+   +   M+  G            +VP+  T N  +   C 
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKG------------IVPDAITYNTLMKQHCI 620

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              +    +++  +           +N LI+G CK    + A  L+ ++  K  V  V +
Sbjct: 621 RNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTS 680

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           YN LI    K+ +I +   L   M  +G   D + +N
Sbjct: 681 YNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYN 717



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 164/337 (48%), Gaps = 27/337 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV+     F   I R  +P ++VT+ +LI  +C  G + +A  L  +M   G  PN+ T 
Sbjct: 413 KVIEPQNLFHEMISRGLKP-DEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTY 471

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI GL + G ++       E+++ M   G   + NV  Y S+++G+CK   ++Q   L
Sbjct: 472 GALIDGLCKHGELDTA----NELLDEMRKKG--LQLNVCIYNSMVNGICKAGNIEQAIKL 525

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM+  GI+ + +         C+   + +A++LL+ M+ RGL P + T+  L+NG+C+
Sbjct: 526 MKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCM 585

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           +G +     L   M  KG +PD  +Y+ L+  +C    +  +MN +         KI+  
Sbjct: 586 LGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHC----IRNSMNTT--------TKIYKR 633

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+   V P++ T NI I G CK  ++ E   L+  +        V  +N+LI+   K   
Sbjct: 634 MRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKK 693

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
              A ELF ++    LVAD   YN  +    +EG ++
Sbjct: 694 ILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 136/284 (47%), Gaps = 26/284 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI G C  G +  A++L+ +M   G + NV   ++++ G+ + GN+   +KL 
Sbjct: 467 NIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLM 526

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM     +  GI  P+   Y ++ID  C+   +D+   L  EM D+G+    +      
Sbjct: 527 KEM-----EVAGI-DPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C    L + +RLL  M+++G+ P   TY  L+  +C+   +N    ++  M  +G  
Sbjct: 581 NGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVA 640

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +Y++LI G+CK  N++EA  + +EMI  G+            VP   + N  I   
Sbjct: 641 PDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGY------------VPTVTSYNALIKRF 688

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            K   +LE  ELF  +         EI+N  +  C + G  EI 
Sbjct: 689 YKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEIT 732



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 165/340 (48%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+++++I G+C  G ++ A +L+  M   G +PN  T +++I  L + G      K+ +E
Sbjct: 294 VSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLRE 353

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M++          P+   Y +LI G  K   V      F EM  K I+ + +        
Sbjct: 354 MMSQK------IIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQG 407

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             +  K++E   L   M+ RGL P   TYT L++ YC  G++  A +L + M + G  P+
Sbjct: 408 FGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPN 467

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y  LI+G CK+  ++ A  +  EM   G      ++ +C         N  ++G+CK
Sbjct: 468 IVTYGALIDGLCKHGELDTANELLDEMRKKGL-----QLNVC-------IYNSMVNGICK 515

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G++ + ++L   +E++  +     + ++I   C+ G  + A +L  ++  + L   VV 
Sbjct: 516 AGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVT 575

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +N+L++     G ++  + LL  M E G   D  T+NTLM
Sbjct: 576 FNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLM 615



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 166/384 (43%), Gaps = 61/384 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+NS+I   C  G   +A +++++M +    P+     TLI G  + G++    K  
Sbjct: 327 NRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWF 386

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL 137
            EM++          P+   Y +LI G  +   V + ++LF EM  +G+  +     TL+
Sbjct: 387 DEMLSKK------ISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI 440

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  ++V A  L   M+Q G+ P I TY  L++G C  G+++ A  L D M +KG  
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQ 500

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +V  Y+ ++NG CK  N+E+A+            K+  EM++  + P+  T    ID  
Sbjct: 501 LNVCIYNSMVNGICKAGNIEQAI------------KLMKEMEVAGIDPDAITYTTVIDAY 548

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + +  +L   +     +  V  FN L+ G C  G+ E    L   +  K +V D 
Sbjct: 549 CRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDA 608

Query: 315 VA-----------------------------------YNILIHALGKEGQIKKENYLLLS 339
           +                                    YNILI    K   +K+  +L   
Sbjct: 609 ITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKE 668

Query: 340 MEENGCALDVDTFNTLMISFLQKE 363
           M E G    V ++N L+  F +K+
Sbjct: 669 MIEKGYVPTVTSYNALIKRFYKKK 692



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 16/220 (7%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK-VNVAIALFDSMARKGFMPDVFSYS 201
           L EA +LL+ ++  GL   + +    L+      + + +AI +F      G   +  SY+
Sbjct: 206 LSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVF---CEYGISWNTTSYN 262

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           ++I   C+   V+EA             ++  +M   +  P+  + +  IDG C  G + 
Sbjct: 263 IIIYSLCRLGKVKEA------------HRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELK 310

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           + ++L   ++I   +     +NS+I   CK G    A ++  ++  + ++ D V Y  LI
Sbjct: 311 KALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLI 370

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           H   K G ++  N     M     + D  T+ TL+  F Q
Sbjct: 371 HGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQ 410


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 172/364 (47%), Gaps = 27/364 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  Y P + +T N+ IKGFC++G I  A     K+   G   +  +  TLI
Sbjct: 122 AFSVLAKILKMGYEP-DIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLI 180

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G     L+L + +       G + + N   Y ++IDG+ KD+ V+   DL+ EM
Sbjct: 181 NGLCKVGETRAALQLLRRVD------GKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEM 234

Query: 127 KDKGINANTLLCKKT--------KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             K I+ + +             KL +A  L   M+   + P ++T+  L++G+C  G++
Sbjct: 235 VAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRL 294

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A  + D M  +   P+V +++ L++G+CK+  ++E   V   M+  G K         
Sbjct: 295 KKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIK--------- 345

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P   T    +DG C    V +  ++F T+        V  +N +I G CK    + A
Sbjct: 346 ---PNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKA 402

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            +LF ++  K+++ DVV YN LI  L K G+I     L+  M + G   ++ T+N+++ +
Sbjct: 403 MKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNA 462

Query: 359 FLQK 362
            L K
Sbjct: 463 LLTK 466



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 157/318 (49%), Gaps = 49/318 (15%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V +N++I G   + ++ DA  L  +M      P+V T   LI G    G +   + L
Sbjct: 206 LNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDL 265

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTL--- 136
             +M+        I KP+V+ +  L+DG CK+  + + K++   M ++D   N +T    
Sbjct: 266 FNKMI-----LENI-KPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTL 319

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               CK  K+ E   +  +MM++G+ P + TY  L++GYCLV +VN A  +F++M+++G 
Sbjct: 320 VDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGV 379

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             +V SY+++ING+CK   V++AM            K+F EM   +++P+  T N  IDG
Sbjct: 380 TANVHSYNIMINGFCKIKKVDKAM------------KLFIEMHHKHIIPDVVTYNSLIDG 427

Query: 254 LCKNGHVLEVMELFPTL----EISNCELFVEIFNS-------------------LIRGCC 290
           LCK+G +    +L   +    +  N   +  I N+                   LI+G C
Sbjct: 428 LCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNALLTKLKDQGIQPNMHTDTILIKGLC 487

Query: 291 KFGIFEIASELFNKLSCK 308
           + G  E A ++F  L  K
Sbjct: 488 QSGKLEAARKVFEDLLVK 505



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 163/371 (43%), Gaps = 84/371 (22%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFN LI  FC  G I  A  ++ K+   G  P++ T +T I G    G ++  L  H
Sbjct: 102 NFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFH 161

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT- 141
            ++V  +G     +  +   YG+LI+GLCK   V +T+            A   L ++  
Sbjct: 162 DKLV-ALG-----FHLDQVSYGTLINGLCK---VGETR------------AALQLLRRVD 200

Query: 142 -KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            KLV+ N ++              Y  +++G      VN A  L+  M  K   PDV +Y
Sbjct: 201 GKLVQLNAVM--------------YNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTY 246

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           S LI G+     +++A++            +FN+M L N+ P+ +T NI +DG CK G +
Sbjct: 247 SALIRGFFIVGKLKDAID------------LFNKMILENIKPDVYTFNILVDGFCKEGRL 294

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCK-------FGIFEI---------------- 297
            +   +   + I + +  V  FN+L+ G CK         +F +                
Sbjct: 295 KKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSL 354

Query: 298 ------------ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
                       A ++FN +S + + A+V +YNI+I+   K  ++ K   L + M     
Sbjct: 355 MDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHI 414

Query: 346 ALDVDTFNTLM 356
             DV T+N+L+
Sbjct: 415 IPDVVTYNSLI 425



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 123/267 (46%), Gaps = 20/267 (7%)

Query: 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
           F +  ++  L K +       L  +M+ +GIN N +         C+   +  A  +L  
Sbjct: 69  FEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAK 128

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           +++ G  P I T    + G+CL G+++ A+   D +   GF  D  SY  LING CK   
Sbjct: 129 ILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGE 188

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
              A+ + R +          + KL  +       N  IDG+ K+ HV +  +L+  +  
Sbjct: 189 TRAALQLLRRV----------DGKLVQL--NAVMYNTVIDGMSKDKHVNDAFDLYSEMVA 236

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 V  +++LIRG    G  + A +LFNK+  +N+  DV  +NIL+    KEG++KK
Sbjct: 237 KRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKK 296

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
              +L  M       +V TFNTL+  F
Sbjct: 297 AKNVLDMMMIQDIKPNVSTFNTLVDGF 323


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 173/341 (50%), Gaps = 26/341 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N++I G C +G + +A +++++M + G  P+V T   LI G  + G++   L L +EM 
Sbjct: 328 YNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEM- 386

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI----NANTLL----C 138
                +  + +P++  Y SL  GLCK RL D + D+F ++   G      A ++L    C
Sbjct: 387 ----KYSNM-EPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFC 441

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
            +  L  A++L+E M++  L P    +  L++G+C +G    A+  F+ M   G +P + 
Sbjct: 442 MQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIA 501

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           + +V+I+ +C+   VEEA+N            + NEM+   + P  FT N  I+ LCK  
Sbjct: 502 TCNVIIDAHCREGRVEEALN------------LMNEMQTQGIFPNLFTYNAVINRLCKER 549

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
                +ELFP +   N    V ++++LI G  K    + A  L+ ++    +  D+VAY 
Sbjct: 550 KSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYT 609

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ILI+ L    ++ +   L   M ENG   D  ++ +++  F
Sbjct: 610 ILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGF 650



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 169/348 (48%), Gaps = 28/348 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +   ++ LIKGFCM+G++  A +L+++M      P+ +  ++L+ G  + G     L+  
Sbjct: 429 DQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFF 488

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             M+ G     GI  P++     +ID  C++  V++  +L  EM+ +GI  N        
Sbjct: 489 NMMLEG-----GIL-PSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVI 542

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+ K   A  L  LM++R + P +  Y+ L++G+        A+ L+  M + G  
Sbjct: 543 NRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVT 602

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ +Y++LIN  C    + EA N+ ++M  NG            + P+  +    I G 
Sbjct: 603 PDMVAYTILINILCHRSRMCEAYNLFKKMTENG------------MTPDKISYTSVIAGF 650

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + +   LF  +        V  + SL+ G CK    +IA  L +++  K +  DV
Sbjct: 651 CRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDV 710

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V YN+LI A  + G + K   +L  M+ENG   D  T+  +M+ +L K
Sbjct: 711 VTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTY--MMLEWLLK 756



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 173/377 (45%), Gaps = 44/377 (11%)

Query: 21  PLNDVTFNSLIKGFCM----EGNI--RDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           P N  T+  ++  +C     E +I  R A++++++M   G  P V T  T I GL R G 
Sbjct: 246 PPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGY 305

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           +   L   + +++  G        NV+CY ++I GLCK   +D+   +  EMK  GI+ +
Sbjct: 306 VESALDFVRSLISANGLV------NVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPD 359

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                      CK+  + +   L+E M    + P + +Y+ L +G C     ++++ +F 
Sbjct: 360 VYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFR 419

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN--------------GFKKI- 231
            +   G+  D  +YS+LI G+C   +++ A  +  EM+ N              GF K+ 
Sbjct: 420 DLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMG 479

Query: 232 --------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                   FN M    ++P   TCN+ ID  C+ G V E + L   ++       +  +N
Sbjct: 480 LWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYN 539

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           ++I   CK    E A ELF  +  +N++  VV Y+ LI    K+   +K   L   M + 
Sbjct: 540 AVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKI 599

Query: 344 GCALDVDTFNTLMISFL 360
           G   D+  + T++I+ L
Sbjct: 600 GVTPDMVAY-TILINIL 615



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 134/298 (44%), Gaps = 37/298 (12%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK--KTKLVEANR------LL 150
           +V  +  LI     + +++   D+F++ K  G+  +T  C      L EANR      L 
Sbjct: 178 SVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLF 237

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCL--VGKVNV----AIALFDSMARKGFMPDVFSYSVLI 204
           E M   G  P +FTYT ++N YC    G+ ++    A  + + M R G  P V +YS  I
Sbjct: 238 EEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYI 297

Query: 205 NGYCKNFNVEEAMNVSREMI-----------------------LNGFKKIFNEMKLCNVV 241
            G C+   VE A++  R +I                       L+   K+  EMK C + 
Sbjct: 298 YGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGIS 357

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+ +T +I I G CK G V + + L   ++ SN E  +  ++SL  G CK  + +I+ ++
Sbjct: 358 PDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDI 417

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           F  L       D  AY+ILI     +G +   + L+  M  N  A D   F +L+  F
Sbjct: 418 FRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGF 475



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 95/181 (52%), Gaps = 6/181 (3%)

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
           +LF+ M   G  P+VF+Y++++N YCK  N  EA   +R+       +I  EM+     P
Sbjct: 235 SLFEEMKSTGPPPNVFTYTIMMNFYCKG-NFGEADIDTRQAT-----EILEEMERNGESP 288

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              T + +I GLC+ G+V   ++   +L  +N  + V  +N++I G CK G  + A ++ 
Sbjct: 289 TVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVL 348

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            ++    +  DV  Y+ILIH   K+G ++K  YL+  M+ +     + ++++L     +K
Sbjct: 349 EEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKK 408

Query: 363 E 363
            
Sbjct: 409 R 409


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 167/337 (49%), Gaps = 30/337 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V FN LI   C +G++  AS+LV  M   GC PN  T ++L+ GL   G ++  + L 
Sbjct: 69  NPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLL 128

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL----- 136
             MV           PN   +G+L+DG  K  R +D  + + + +++KG   N       
Sbjct: 129 NRMV------ANKCVPNDITFGTLVDGFVKHGRALDGVR-VLVSLEEKGYRGNEFSYSSL 181

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L K+ K     +L + M+++G  P    Y+ L++G C  GK + A      M  KG 
Sbjct: 182 ISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGH 241

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+ F+YS L+ GY +  ++ +A+ V +EM  N      N  ++C         +I I+G
Sbjct: 242 TPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDND----CNHHEVCY--------SILING 289

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN--LV 311
           LCKNG + E + ++  +     +L V  ++S+I G C   + E   +LFN++ C N  L 
Sbjct: 290 LCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQ 349

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            DVV YNIL++A   +  + +   +L +M + GC  D
Sbjct: 350 PDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPD 386



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 140/297 (47%), Gaps = 43/297 (14%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           F++ C    N+VT+NSL+ G C++G +  A  L+ +M    C PN  T  TL+ G  + G
Sbjct: 97  FLKGCVP--NEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHG 154

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
                +++    +  + + G  Y+ N F Y SLI GL K+   +    L+ EM +KG   
Sbjct: 155 RALDGVRV----LVSLEEKG--YRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKP 208

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           NT+        LC++ K  EA   L  M  +G  P  FTY+ L+ GY   G ++ AI ++
Sbjct: 209 NTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVW 268

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---------------- 229
             M           YS+LING CKN  ++EA+ V ++M+  G K                
Sbjct: 269 KEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNA 328

Query: 230 -------KIFNEMKLCN---VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
                  K+FN+M LC+   + P+  T NI ++  C    V   +++  T+    C+
Sbjct: 329 QLVEQGMKLFNQM-LCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCD 384



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 13/197 (6%)

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
           P++   C VG V+ A+ +F  M+ +  + D ++YS L++G C    ++EA++        
Sbjct: 5   PIVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVS-------- 56

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
               + +EM++    P     N+ I  LCK G +    +L   + +  C      +NSL+
Sbjct: 57  ----LLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLV 112

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G C  G  + A  L N++     V + + +  L+    K G+      +L+S+EE G  
Sbjct: 113 HGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYR 172

Query: 347 LDVDTFNTLMISFLQKE 363
            +  ++++L IS L KE
Sbjct: 173 GNEFSYSSL-ISGLFKE 188



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 120/323 (37%), Gaps = 95/323 (29%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ND+TF +L+ GF   G   D  +++  +   G R N  +  +LI+GL + G     ++L 
Sbjct: 139 NDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLW 198

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EMV          KPN   Y +LIDGLC++   D+ K+  +EMK+KG   N+       
Sbjct: 199 KEMVEKG------CKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLM 252

Query: 137 -------------------------------------LCKKTKLVEANRLLELMMQRG-- 157
                                                LCK  KL EA  + + M+ RG  
Sbjct: 253 WGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIK 312

Query: 158 -----------------------------------LNPVIFTYTPLLNGYCLVGKVNVAI 182
                                              L P + TY  LLN +C    V+ AI
Sbjct: 313 LDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAI 372

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFN-VEEAMNVSREMILN--------GFKKIFN 233
            + ++M  +G  PD  +  + +     N +  ++      E+++         G   I  
Sbjct: 373 DILNTMLDQGCDPDFITCDIFLKTLRDNMDPPQDGREFLDELVVRLIKRQRTVGASNIIE 432

Query: 234 EMKLCNVVPETFTCNIFIDGLCK 256
            M    ++P+  T  + +  LCK
Sbjct: 433 VMLQKFLLPKPSTWALAVQQLCK 455


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 159/312 (50%), Gaps = 26/312 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P++ +T+N+LI GFC EG +    +L ++M   G +P++ T + L+ GL   G ++  +K
Sbjct: 497 PMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIK 556

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--- 137
           L  E         G+   N+  YG +++G CK   ++  ++LF E+  K +  N+++   
Sbjct: 557 LWDEF-----KASGLIS-NIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNI 610

Query: 138 -----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                C+   +  A +LLE M  +G+ P   TY+ L++G C +G V  A  L D M ++G
Sbjct: 611 IIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEG 670

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F+P+V  Y+ LI GYCK   ++ A +   EMI   F          N+ P  FT  + ID
Sbjct: 671 FVPNVVCYTALIGGYCKLGQMDTAESTWLEMI--SF----------NIHPNKFTYTVMID 718

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CK G++ +   L   ++ S     V  +N L  G CK    + A ++ ++++ + L  
Sbjct: 719 GYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPV 778

Query: 313 DVVAYNILIHAL 324
           D + Y  L+H  
Sbjct: 779 DEITYTTLVHGW 790



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 179/420 (42%), Gaps = 73/420 (17%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GAL      I +   P   VT  SL++GFC    I  A   ++++ + G   +   C ++
Sbjct: 343 GALKIKDVMISKNITP-TSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSV 401

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L +    +   +  + M++        ++P+      L+ GLCKD    +  +L+  
Sbjct: 402 VHWLCKKFRYHSAFRFTKMMLSRN------FRPSDLLLTMLVCGLCKDGKHLEATELWFR 455

Query: 126 MKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           + +KG     + +N L   LC   KL EA+R+++ M++RGL     TY  L+ G+C  GK
Sbjct: 456 LLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGK 515

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------- 228
           V     L + M ++G  PD+++Y+ L+ G C    +++A+ +  E   +G          
Sbjct: 516 VEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGI 575

Query: 229 --------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
                         + +FNE+    +   +   NI I   C+NG+V   ++L   ++   
Sbjct: 576 MMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKG 635

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI---- 330
                  ++SLI G C  G+ E A  L +++  +  V +VV Y  LI    K GQ+    
Sbjct: 636 ILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAE 695

Query: 331 -------------------------------KKENYLLLSMEENGCALDVDTFNTLMISF 359
                                          +K N LL+ M+E+G   DV T+N L   F
Sbjct: 696 STWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGF 755



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 160/394 (40%), Gaps = 60/394 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I G C  G + +A +L +KM   G +PN+ T   LI GL +    +    + 
Sbjct: 254 NVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHIL 313

Query: 83  QEMVNG------------------MGDFGGIYK-----------PNVFCYGSLIDGLCKD 113
            EM+                    MG+  G  K           P      SL+ G CK 
Sbjct: 314 DEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKS 373

Query: 114 RLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             ++  ++   E+   G++ +          LCKK +   A R  ++M+ R   P     
Sbjct: 374 DQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLL 433

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L+ G C  GK   A  L+  +  KG      + + LI+G C    + EA  + +EM+ 
Sbjct: 434 TMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLE 493

Query: 226 NGFK-----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
            G                         ++  EM    + P+ +T N  + GLC  G + +
Sbjct: 494 RGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDD 553

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            ++L+   + S     +  +  ++ G CK    E    LFN+L  K +  + + YNI+I 
Sbjct: 554 AIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIK 613

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A  + G +     LL +M+  G   +  T+++L+
Sbjct: 614 AHCQNGNVAAALQLLENMKSKGILPNCATYSSLI 647



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 155/361 (42%), Gaps = 65/361 (18%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
           D   L+ +  TF   P++ TC+  ++ L +        ++ + M  G         P+VF
Sbjct: 172 DVFYLLARKGTF---PSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGAC-------PDVF 221

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
            + ++I+ LCK   ++   +LFM+M+  GI+ N +        LC+  +L  A  L E M
Sbjct: 222 SFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKM 281

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
             +G+ P + TY  L+NG   +   +    + D M   GF P+V  ++ LI+GYCK  N+
Sbjct: 282 TVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNI 341

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV-------LEVMEL 266
           E A+ +   MI              N+ P + T    + G CK+  +        E++  
Sbjct: 342 EGALKIKDVMISK------------NITPTSVTLYSLMQGFCKSDQIEHAENALEEILSS 389

Query: 267 FPTLEISNCELFVEI------FNSLIR----------------------GCCKFGIFEIA 298
             ++   NC   V        ++S  R                      G CK G    A
Sbjct: 390 GLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEA 449

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
           +EL+ +L  K   A  V  N LIH L   G++ + + ++  M E G  +D  T+N L++ 
Sbjct: 450 TELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILG 509

Query: 359 F 359
           F
Sbjct: 510 F 510



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 13/179 (7%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A+ +F  +ARKG  P + + +  ++   K    E+   V R M                 
Sbjct: 170 AVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGA------------- 216

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+ F+    I+ LCK G +   +ELF  +E       V  +N +I G C+ G  + A E
Sbjct: 217 CPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFE 276

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L  K++ K +  ++  Y  LI+ L K     K N++L  M   G   +V  FN L+  +
Sbjct: 277 LKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGY 335


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 45/342 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 115 KYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSF 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M        G+ +P+V+ Y  LI+GLCK+         
Sbjct: 175 NTLMNGYIRLGDLDEGFRLKTAM-----HASGV-QPDVYTYSVLINGLCKE--------- 219

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 220 ------------------SKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAM 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G C+  ++++A ++  EM + G K            P
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLK------------P 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N +L    + +LI G C+ G +  A ++ 
Sbjct: 310 DKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVL 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            ++    L  D + Y ++I+   K+G +   + LL  M+ +G
Sbjct: 370 REMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 154/344 (44%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 183 RLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLC+ G
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCRKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D V Y 
Sbjct: 291 DLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 351 ALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKK 394



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 14/185 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL R G+    LK  
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGD----LKQA 295

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD----RLVDQTKDLFME---MKDKGINA-N 134
           +++++ M   G   KP+   Y +LIDG CK+       +  K +  E   + D G  A  
Sbjct: 296 RDLIDEMSMKG--LKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALI 353

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           + LC++ + ++A ++L  M+  GL P   TYT ++N +C  G V     L   M R G M
Sbjct: 354 SGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQM 413

Query: 195 PDVFS 199
           P V +
Sbjct: 414 PSVVT 418


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 176/414 (42%), Gaps = 75/414 (18%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R C  P + V++N++I G C    + +A +L K+M    C+PN  T   LI G  + G++
Sbjct: 157 RNCLIP-DCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDV 215

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
                L +EM   MG  G     +VF Y +LI G C    +++ K+LF EM  K +  N 
Sbjct: 216 EEGFGLLEEM-EKMGLEG-----DVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNV 269

Query: 136 L--------LCKKTKLVEAN-----------------------------------RLLEL 152
           +        LCKK K  EA                                    ++L+L
Sbjct: 270 VTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDL 329

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M++RG  P   TY  ++NG C  G+V+ A+ + ++MA+KG  PDV +YS L+ G C    
Sbjct: 330 MVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGK 389

Query: 213 VEEAMN-------------------------VSREMILNGFKKIFNEMKLCNVVPETFTC 247
           ++EA++                         + ++  L   K+++  M          T 
Sbjct: 390 IDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTY 449

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           NI IDG    G + + +EL+     S        +  LI G CK  +  IA  LFNK   
Sbjct: 450 NILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRA 509

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
                 V  YN L+ +L +E  +++   L   M       DV +FN ++   L+
Sbjct: 510 SGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLK 563



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 172/371 (46%), Gaps = 29/371 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T K   A    G  ++R +  LN   FN L+KGFC  G+   A  L   M      P+  
Sbjct: 107 TQKPSFAFGVLGLIMKRGFH-LNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCV 165

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           + +T+I GL +   +    +L +EM       GG  KPN   + +LIDG CK+  V++  
Sbjct: 166 SYNTVINGLCKGKRLVEAKELFKEMK------GGECKPNSVTFSALIDGFCKNGDVEEGF 219

Query: 121 DLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L  EM+  G+  +  +        C K  +     L   M+++ + P + TY+ L+N  
Sbjct: 220 GLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNAL 279

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C   K   A  + D+M      PDV +Y+VL +G  KN    +A+ V   M+  G +   
Sbjct: 280 CKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEE--- 336

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                    P   T N  I+GLCK G V + + +  T+     +  V  +++L++G C  
Sbjct: 337 ---------PNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGV 387

Query: 293 GIFEIASELFNKLSCK--NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           G  + A +L N L  K  ++  DV A+N++I  L K+ +++    +  +M E G   ++ 
Sbjct: 388 GKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIV 447

Query: 351 TFNTLMISFLQ 361
           T+N L+  +L 
Sbjct: 448 TYNILIDGYLS 458



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 161/353 (45%), Gaps = 44/353 (12%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+      ++R   P N+VT+N++I G C EG + DA  +++ MA  G +P+V T  TL+
Sbjct: 323 AIKVLDLMVKRGEEP-NNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLV 381

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   G ++  + L   +++   +F    KP+VF +  +I  LCK R            
Sbjct: 382 KGLCGVGKIDEAVDLLNLLMSK--EFH--IKPDVFAFNLVIQELCKQR------------ 425

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                          +L  A R+   M++RG    I TY  L++GY   GK+  A+ L+ 
Sbjct: 426 ---------------RLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWK 470

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
                G  P+  +Y+VLING CK              +L+  K +FN+ +     P    
Sbjct: 471 DAVDSGISPNAATYTVLINGLCK------------MQMLSIAKGLFNKKRASGTRPTVSE 518

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  +  LC+   V +   LF  +  +N +  V  FN +I G  K G  E A EL  ++ 
Sbjct: 519 YNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEML 578

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             NLV D + ++ILI+   K GQ+ +   L   M   G   D   F++L+  +
Sbjct: 579 NMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGY 631



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 147/337 (43%), Gaps = 49/337 (14%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVN-------------------------GMGD 91
           P+ ++C+TLI  LR+  + +  + +H +M +                           G 
Sbjct: 57  PSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGV 116

Query: 92  FGGIYKP----NVFCYGSLIDGLCKDRLVDQTKDLFMEMK-----DKGINANTL---LCK 139
            G I K     NV+ +  L+ G C+     +  DLF  MK        ++ NT+   LCK
Sbjct: 117 LGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCK 176

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             +LVEA  L + M      P   T++ L++G+C  G V     L + M + G   DVF 
Sbjct: 177 GKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFV 236

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           YS LI+G+C   ++E              K++FNEM   NV P   T +  ++ LCK   
Sbjct: 237 YSALISGFCSKGDIERG------------KELFNEMLRKNVTPNVVTYSCLMNALCKKQK 284

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
             E  ++  T+        V  +  L  G  K G    A ++ + +  +    + V YN 
Sbjct: 285 WKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNA 344

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +I+ L KEG++     +L +M + G   DV T++TL+
Sbjct: 345 IINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLV 381



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 12/204 (5%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P   + + L+  +    K + A  +   + ++GF  +V+++++L+ G+C++ +  +AM+ 
Sbjct: 92  PCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMD- 150

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                      +F  MK   ++P+  + N  I+GLCK   ++E  ELF  ++   C+   
Sbjct: 151 -----------LFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNS 199

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             F++LI G CK G  E    L  ++    L  DV  Y+ LI     +G I++   L   
Sbjct: 200 VTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNE 259

Query: 340 MEENGCALDVDTFNTLMISFLQKE 363
           M       +V T++ LM +  +K+
Sbjct: 260 MLRKNVTPNVVTYSCLMNALCKKQ 283



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 103/212 (48%), Gaps = 16/212 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+N LI G+   G +  A +L K     G  PN  T   LI GL +   +++   
Sbjct: 443 PSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKG 502

Query: 81  L-HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           L +++  +G        +P V  Y +L+  LC++  V+Q ++LF EM++   + + +   
Sbjct: 503 LFNKKRASGT-------RPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFN 555

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                  K   +  A  LL  M+   L P   T++ L+N +  +G+++ A +L++ M   
Sbjct: 556 IIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSC 615

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           G +PD   +  L+ GY      E+ +++ ++M
Sbjct: 616 GHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQM 647


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 163/360 (45%), Gaps = 26/360 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            ++V  AL       +     L+     +L+ G C  G++ +A ++   M   G  PN  
Sbjct: 15  AAEVRSALAVLARGTKSGDAALDVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEV 74

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   LI G    G   +   L  EM  G     G+ +PN++ Y  L+   C+       +
Sbjct: 75  TYTALIHGYFVRGQREMGFALVGEMRRG-----GV-EPNLYTYNCLVGEWCRTGEFKSAR 128

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            LF EM  KG+  N +        LC+  KL +A +L E M + G++P + T+  L++GY
Sbjct: 129 LLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGY 188

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
              GK++ A+  F+ M   G  P V +Y+ LI G+C+  ++  A+            + F
Sbjct: 189 GKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAI------------RAF 236

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           ++MK   + P   T  I I    K   +    E+   +E +  E+ V+ +  L+   C  
Sbjct: 237 SDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCME 296

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G    A +LF  +  K +  + V Y+++I+  G+EG   K   L++ M ++G   +V ++
Sbjct: 297 GKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASY 356



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 110/242 (45%), Gaps = 23/242 (9%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+   + EA R+ ++M + G+ P   TYT L++GY + G+  +  AL   M R G  P++
Sbjct: 49  CQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRRGGVEPNL 108

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNE 234
           ++Y+ L+  +C+    + A  +  EM L G                         ++F  
Sbjct: 109 YTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEA 168

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+   + P   T N+ IDG  K G +   +  F  ++ +  +  V  +N LI G C+   
Sbjct: 169 MRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARD 228

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A   F+ +  + L    V Y ILI A  KE ++ +   +L  ME+ G  +DV ++  
Sbjct: 229 IAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGV 288

Query: 355 LM 356
           L+
Sbjct: 289 LL 290



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 26/257 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++N LI G C  G ++DA+QL + M   G  P++ T + LI G  + G M+  L   
Sbjct: 142 NVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFF 201

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M        G+ +P+V  Y  LI G C+ R +      F +MK++ +    +      
Sbjct: 202 NQM-----KAAGL-QPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILI 255

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K+ ++  A  +L  M + GL   + +Y  LL+  C+ GK+  A  LF SM  KG  
Sbjct: 256 GAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVK 315

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+   Y ++I GY +  +  +A+            ++  EM+   ++P   +  + I  L
Sbjct: 316 PNNVLYDMMIYGYGREGSSYKAL------------RLIMEMRKSGLIPNVASYCLTIRLL 363

Query: 255 CKNGHVLEVMELFPTLE 271
           C  G   E   L   +E
Sbjct: 364 CNEGKCQEAEALIGDME 380



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 12/194 (6%)

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L++G C  G V  A  +FD M R G  P+  +Y+ LI+GY         +   REM  
Sbjct: 42  TALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYF--------VRGQREM-- 91

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
            GF  +  EM+   V P  +T N  +   C+ G       LF  + +      V  +N L
Sbjct: 92  -GFA-LVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNIL 149

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G C+ G  + A++LF  +  + +   +V +N+LI   GK G++    +    M+  G 
Sbjct: 150 IAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGL 209

Query: 346 ALDVDTFNTLMISF 359
              V T+N L+  F
Sbjct: 210 QPSVVTYNELIGGF 223



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++  L+   CMEG +  A +L + M + G +PN    D +I G  R G+    L+L  EM
Sbjct: 285 SYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEM 344

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139
                   G+  PNV  Y   I  LC +    + + L  +M+D G+  +  +C+
Sbjct: 345 RKS-----GLI-PNVASYCLTIRLLCNEGKCQEAEALIGDMEDAGLQTSESICR 392


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 181/390 (46%), Gaps = 41/390 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A  AF S +RR   P +  TFN++I G C  G +R A  + K +  +G  P+V T ++LI
Sbjct: 175 AEKAFRSALRRRVSP-DIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLI 233

Query: 67  TGLRR---TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            G  +    GNM     L +EMV       GI  P    +G LI+G CK+        +F
Sbjct: 234 DGYCKKGGAGNMYHVDMLLKEMVEA-----GI-SPTAVTFGVLINGYCKNSNTAAAVRVF 287

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EMK +GI A+ +        LC + K+ E  +L+E M   GL+P   T+  +L G+C  
Sbjct: 288 EEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKK 347

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------------ 223
           G +  A    D M  +   PDV  Y++LI+GY +   +E+AM V   M            
Sbjct: 348 GMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTY 407

Query: 224 --ILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
             ++ GF +         + +EMK   +  +  T N+ I  LC  G V + ++L   +  
Sbjct: 408 NCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSE 467

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              E     +N++I+G C  G  + A E+  ++      A+VV YN+ I    + G++ +
Sbjct: 468 VGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDE 527

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            N LL  M +     +  T+ T+    ++K
Sbjct: 528 ANDLLNEMLDKCLVPNGITYETIKEGMMEK 557



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 32/366 (8%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           L+A  S  R  +RP +  + N+L+ G      +  A +  +        P++ T +T+I+
Sbjct: 143 LLAGESHPR--HRP-STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVIS 199

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD---QTKDLFM 124
           GL R G     L+   ++   +  +G    P+V  Y SLIDG CK            L  
Sbjct: 200 GLCRIGQ----LRKAGDVAKDIKAWG--LAPSVATYNSLIDGYCKKGGAGNMYHVDMLLK 253

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           EM + GI+   +         CK +    A R+ E M Q+G+   + TY  L++G C  G
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEG 313

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           KV   + L + M   G  P+  ++  ++ G+CK   + +A +              + M 
Sbjct: 314 KVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADAND------------WIDGMT 361

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
             NV P+     I IDG  + G + + M +   +        V  +N LI G  + G + 
Sbjct: 362 ERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWR 421

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            AS L +++  K + ADVV YN+LI AL  +G+++K   LL  M E G   +  T+NT++
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 357 ISFLQK 362
             F  K
Sbjct: 482 QGFCDK 487



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 26/249 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N++TF  ++KGFC +G + DA+  +  M      P+V     LI G RR G M   + + 
Sbjct: 333 NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVK 392

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M        GI  PNV  Y  LI G  +         L  EMK+KGI A+ +      
Sbjct: 393 EAMAK-----KGI-SPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLI 446

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC K ++ +A +LL+ M + GL P   TY  ++ G+C  G +  A  +   M +    
Sbjct: 447 GALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKR 506

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +V +Y+V I  +C+   ++EA +            + NEM    +VP   T     +G+
Sbjct: 507 ANVVTYNVFIKYFCQIGKMDEAND------------LLNEMLDKCLVPNGITYETIKEGM 554

Query: 255 CKNGHVLEV 263
            + G+  ++
Sbjct: 555 MEKGYTPDI 563


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 172/344 (50%), Gaps = 26/344 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N   FN L+ GFC  G +  A  +  ++   G RP V + +TLI+G  + G +    +
Sbjct: 139 PPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFR 198

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TL 136
           L   M +          P+VF + +LI+GLCK+  +D+   LF EM  KG+  N    T+
Sbjct: 199 LKGVMESER------VCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTV 252

Query: 137 L----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L    CK  K+  A +  ++M+ +G+ P + TY  L+NG C VG +  A  L + M+  G
Sbjct: 253 LIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASG 312

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD  +++ LI+G CK  ++E A+ + R M+  G       ++L +V    FT  + I 
Sbjct: 313 LRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEG-------IELDDV---AFT--VLIS 360

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLC++G V +   +   +  +  +     +  ++   CK G   +  +L  ++     V 
Sbjct: 361 GLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVP 420

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            VV YN L++ L K+GQ+K    LL +M   G A +  T+N L+
Sbjct: 421 GVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILL 464



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 134/275 (48%), Gaps = 20/275 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---CKKTKLVEAN 147
           Y PN F +  L+ G CK   V   + +F E+  +G+       NTL+   CK   + E  
Sbjct: 138 YPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGF 197

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           RL  +M    + P +FT++ L+NG C  G+++    LFD M  KG +P+  +++VLI+G 
Sbjct: 198 RLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQ 257

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK   V+ A+   + M+  G            V P+  T N  I+GLCK G + E   L 
Sbjct: 258 CKGGKVDLALKNFQMMLAQG------------VRPDLVTYNALINGLCKVGDLKEARRLV 305

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +  S        F +LI GCCK+G  E A E+  ++  + +  D VA+ +LI  L ++
Sbjct: 306 NEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRD 365

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           G++     +L  M   G   D  T+  ++  F +K
Sbjct: 366 GRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKK 400



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 148/329 (44%), Gaps = 61/329 (18%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF++LI G C EG + + S L  +M   G  PN  T   LI G  + G ++L LK  Q M
Sbjct: 214 TFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMM 273

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           +       G+ +P++  Y +LI+GL                           CK   L E
Sbjct: 274 LA-----QGV-RPDLVTYNALINGL---------------------------CKVGDLKE 300

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A RL+  M   GL P   T+T L++G C  G +  A+ +   M  +G   D  +++VLI+
Sbjct: 301 ARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLIS 360

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G C++  V +A  + R+M+  GFK            P+  T  + +D  CK G+V    +
Sbjct: 361 GLCRDGRVHDAERMLRDMLSAGFK------------PDDPTYTMVVDCFCKKGNVXMGFK 408

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L   ++       V  +N+L+ G CK G  + A  L + +    +  + + YNIL+    
Sbjct: 409 LLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILL---- 464

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNT 354
            EG  K           +G ++DVD FN+
Sbjct: 465 -EGHSK-----------HGSSVDVDIFNS 481



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 119/249 (47%), Gaps = 26/249 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF  LI G C  G +  A +  + M   G RP++ T + LI GL + G+    LK  
Sbjct: 246 NGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGD----LKEA 301

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + +VN M   G   +P+   + +LIDG CK   ++   ++   M ++GI  + +      
Sbjct: 302 RRLVNEMSASG--LRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLI 359

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  ++ +A R+L  M+  G  P   TYT +++ +C  G V +   L   M   G +
Sbjct: 360 SGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHV 419

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P V +Y+ L+NG CK   V+ A            K + + M    V P   T NI ++G 
Sbjct: 420 PGVVTYNALMNGLCKQGQVKNA------------KMLLDAMLNVGVAPNDITYNILLEGH 467

Query: 255 CKNGHVLEV 263
            K+G  ++V
Sbjct: 468 SKHGSSVDV 476



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 12/204 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           ++  G  P  F +  L++G+C VG V  A  +FD + ++G  P V S++ LI+G CK   
Sbjct: 133 VLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGA 192

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           VEE   +         K +    ++C   P+ FT +  I+GLCK G + E   LF  +  
Sbjct: 193 VEEGFRL---------KGVMESERVC---PDVFTFSALINGLCKEGRLDEGSLLFDEMCG 240

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                    F  LI G CK G  ++A + F  +  + +  D+V YN LI+ L K G +K+
Sbjct: 241 KGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKE 300

Query: 333 ENYLLLSMEENGCALDVDTFNTLM 356
              L+  M  +G   D  TF TL+
Sbjct: 301 ARRLVNEMSASGLRPDRITFTTLI 324



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 36/188 (19%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+DV F  LI G C +G + DA ++++ M + G +P+  T   ++    + GN+ +  KL
Sbjct: 350 LDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKL 409

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
            +EM +        + P V  Y +L++GL                           CK+ 
Sbjct: 410 LKEMQSDG------HVPGVVTYNALMNGL---------------------------CKQG 436

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           ++  A  LL+ M+  G+ P   TY  LL G+   G  +V + +F+S   KG + D  SY+
Sbjct: 437 QVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGS-SVDVDIFNS--EKGLVKDYASYT 493

Query: 202 VLINGYCK 209
            L+N   K
Sbjct: 494 ALVNESSK 501


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 146/305 (47%), Gaps = 43/305 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +N +I GFC  G +R+A ++++ + + GC PN  T  TLI G  ++GN++  L+L + 
Sbjct: 176 VAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK- 234

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
            V    D     +PNV  + +LI GLCK                             +L 
Sbjct: 235 -VLSSRDHHA--EPNVVTFNALISGLCK---------------------------ADRLE 264

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
            A  L++ M  R L    FTYT L++G C  G+ +    +F+ M R+G  P V +Y+ L+
Sbjct: 265 HAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLV 324

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           + +CK  ++++A  V R M+  G            + P+  T  + ++GL +NG V    
Sbjct: 325 HAHCKAGSLQDAQQVIRSMVAKG------------IPPDVTTYTVLLEGLFENGKVRTAT 372

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           E F  +    C     ++++L+RGCCK  + + A + + ++  + L  D     +L+  L
Sbjct: 373 EFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEML 432

Query: 325 GKEGQ 329
            K G+
Sbjct: 433 CKRGR 437



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 37/347 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TF+ LI G C  G + +A +   +M    C PN+   + L+  L + G M+      
Sbjct: 2   NRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMD------ 55

Query: 83  QEMVNGMGDFGGIY-KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD------KGINANT 135
                 M  F GI   P+V     LI+G C+ +L+D+  +LF EM+       +      
Sbjct: 56  ----QAMAIFRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTA 111

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA-LFDSMARK 191
           ++   CK  +L +A +LLE       +  +   T +  G+C   +V+ A   L D + +K
Sbjct: 112 IIKCYCKMDRLDQARQLLE--ESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKK 169

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
              PD+ +++V+I+G+CK   V EA  +   ++  G             VP   T    I
Sbjct: 170 SAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMG------------CVPNAVTYTTLI 217

Query: 252 DGLCKNGHVLEVMELFPTLEI--SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           DG CK+G++ E ++LF  L     + E  V  FN+LI G CK    E A EL  ++  ++
Sbjct: 218 DGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARD 277

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L AD   Y  L+  L K+G+  + + +   M   GC   V T+ TL+
Sbjct: 278 LRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLV 324



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 17/224 (7%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  +L EA      M++R   P +     LL   C  G ++ A+A+F  +      P 
Sbjct: 13  LCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIFRGIQ---CSPS 69

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V + ++LING+C+   +++A+ +  EM     +K F       +VPE  T    I   CK
Sbjct: 70  VITLNILINGFCELQLLDKALELFHEM-----EKNFA------LVPEATTYTAIIKCYCK 118

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF-NKLSCKNLVADVV 315
              + +  +L    E S C   V    S+ RG CK    + A +L  + +  K+   D+V
Sbjct: 119 MDRLDQARQLLE--ESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIV 176

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           A+N++IH   K G++++   +L ++   GC  +  T+ TL+  F
Sbjct: 177 AWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGF 220


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 146/305 (47%), Gaps = 43/305 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +N +I GFC  G +R+A ++++ + + GC PN  T  TLI G  ++GN++  L+L + 
Sbjct: 176 VAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK- 234

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
            V    D     +PNV  + +LI GLCK                             +L 
Sbjct: 235 -VLSSRDHHA--EPNVVTFNALISGLCK---------------------------ADRLE 264

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
            A  L++ M  R L    FTYT L++G C  G+ +    +F+ M R+G  P V +Y+ L+
Sbjct: 265 HAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLV 324

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           + +CK  ++++A  V R M+  G            + P+  T  + ++GL +NG V    
Sbjct: 325 HAHCKAGSLQDAQQVIRSMVAKG------------IPPDVTTYTVLLEGLFENGKVRTAT 372

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           E F  +    C     ++++L+RGCCK  + + A + + ++  + L  D     +L+  L
Sbjct: 373 EFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEML 432

Query: 325 GKEGQ 329
            K G+
Sbjct: 433 CKRGR 437



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 37/347 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TF+ LI G C  G + +A +   +M    C PN+   + L+  L + G M+      
Sbjct: 2   NRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMD------ 55

Query: 83  QEMVNGMGDFGGIY-KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD------KGINANT 135
                 M  F GI   P+V     LI+G C+ +L+D+  +LF EM+       +      
Sbjct: 56  ----QAMAIFRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTA 111

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA-LFDSMARK 191
           ++   CK  +L +A +LLE       +  +   T +  G+C   +V+ A   L D + +K
Sbjct: 112 IIKCYCKMDRLDQARQLLE--ESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKK 169

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
              PD+ +++V+I+G+CK   V EA  +   ++  G             VP   T    I
Sbjct: 170 SAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMG------------CVPNAVTYTTLI 217

Query: 252 DGLCKNGHVLEVMELFPTLEI--SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           DG CK+G++ E ++LF  L     + E  V  FN+LI G CK    E A EL  ++  ++
Sbjct: 218 DGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARD 277

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L AD   Y  L+  L K+G+  + + +   M   GC   V T+ TL+
Sbjct: 278 LRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLV 324



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 17/224 (7%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  +L EA      M++R   P +     LL   C  GK++ A+A+F  +      P 
Sbjct: 13  LCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIFRGIQ---CSPS 69

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V + ++LING+C+   +++A+ +  EM     +K F       +VPE  T    I   CK
Sbjct: 70  VITLNILINGFCELQLLDKALELFHEM-----EKNFA------LVPEATTYTAIIKCYCK 118

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF-NKLSCKNLVADVV 315
              + +  +L    E S C   V    S+ RG CK    + A +L  + +  K+   D+V
Sbjct: 119 MDRLDQARQLLE--ESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIV 176

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           A+N++IH   K G++++   +L ++   GC  +  T+ TL+  F
Sbjct: 177 AWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGF 220


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 161/342 (47%), Gaps = 45/342 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EG IR A  +   +   G RP+V + 
Sbjct: 115 KYFKLVWGFYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSF 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI G  R G+++   +L   M        G++ P+V+    LI+GLCK+  +D+  +L
Sbjct: 175 NTLINGYIRLGDLDKGFRLKTAM-----HASGVH-PDVYTNTVLINGLCKESKMDEANEL 228

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           F EM DKG+  N +                           T+T L++G+C  G+V++A+
Sbjct: 229 FNEMLDKGLVPNGV---------------------------TFTTLIDGHCKSGRVDLAL 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M R+G+ PD+ +Y+ LI G C+  ++++A ++  EM + G K            P
Sbjct: 262 EIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLK------------P 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    EL   +   +  L    + +LI G C+ G    A ++ 
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKML 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            ++    L  +   Y ++I+   K+G +K  + LL  M+ +G
Sbjct: 370 REMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDG 411



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 158/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 69  FSGLITAYLESGFLRDAIECFRLTRKHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKD---RLVDQTKDLFME--MKDKGINANTLLCKKT 141
                    Y  +++ +  L+   CK+   RL     D   +  ++   ++ NTL+    
Sbjct: 129 ECG------YPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYI 182

Query: 142 KLVEAN---RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +L + +   RL   M   G++P ++T T L+NG C   K++ A  LF+ M  KG +P+  
Sbjct: 183 RLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CK+  V+ A+ + ++M+  G+             P+  T N  I GLC+ G
Sbjct: 243 TFTTLIDGHCKSGRVDLALEIYKQMLRQGYS------------PDLITYNTLIYGLCRKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A EL  ++  +++  D VAY 
Sbjct: 291 DLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   +  T+  ++  F ++
Sbjct: 351 ALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQ 394



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ ++  A  + + + + GL P + ++  L+NGY  +G ++    L  +M   G  PDV
Sbjct: 147 CKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDV 206

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           ++ +VLING CK   ++EA             ++FNEM    +VP   T    IDG CK+
Sbjct: 207 YTNTVLINGLCKESKMDEA------------NELFNEMLDKGLVPNGVTFTTLIDGHCKS 254

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V   +E++  +        +  +N+LI G C+ G  + A +L  ++S K L  D + Y
Sbjct: 255 GRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITY 314

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             LI    KEG ++    L   M E    LD D   T +IS L +E
Sbjct: 315 TTLIDGSCKEGDLETAFELRKRMIEESIRLD-DVAYTALISGLCQE 359



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 16/182 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M   G  P++ T +TLI GL R G++     L 
Sbjct: 240 NGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLI 299

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM + G+       KP+   Y +LIDG CK+  ++   +L   M ++ I  + +     
Sbjct: 300 VEMSMKGL-------KPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTAL 352

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ + V+A ++L  M+  GL P   TYT ++NG+C  G V  A  L   M R G 
Sbjct: 353 ISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGH 412

Query: 194 MP 195
           +P
Sbjct: 413 VP 414


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 167/349 (47%), Gaps = 27/349 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N++IK +C EG++  A +  + +   G  P   TC+ L+ G  RTG +     L 
Sbjct: 182 DTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLF 241

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             M+  MG      + N + Y  LI GLC  + V +   LF+ MK  G + N        
Sbjct: 242 L-MMPLMG-----CQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLI 295

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ +A  L + M Q G+ P + TY  ++ GY  +G++N A+ + + M + G  
Sbjct: 296 SGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCH 355

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD ++Y+ LI G C     EEA     E++ N  K+ F         P   T    I+G 
Sbjct: 356 PDDWTYNTLIYGLCDQ-KTEEA----EELLNNAVKEGF--------TPTVVTFTNLINGY 402

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C      + + +   +  S C+L +++F  LI    K    + A EL N++S   LV +V
Sbjct: 403 CMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNV 462

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + Y  +I    K G++     +L  ME +GC  +  T+N+LM   ++ +
Sbjct: 463 ITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDK 511



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 156/349 (44%), Gaps = 33/349 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+ S+I G+C  G +  A +++K M   GC+PN  T ++L+ GL +        KLH
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDK------KLH 514

Query: 83  QEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT----- 135
           + M  +  M   G I  PNV  Y +L+ G C +   D    LF  M+  G+  +      
Sbjct: 515 KAMALLTKMQKDGII--PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAV 572

Query: 136 ---LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  +  EA      ++++G+      YT L++G+   G  + A  L + M  +G
Sbjct: 573 LTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEG 629

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD ++YSVL++  CK   + EA+ +  +M L G K        C +    F   I ID
Sbjct: 630 CTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIK--------CTI----FAYTILID 677

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            + + G       ++  +  S  +     +   I   CK G  E A +L  K+  + +  
Sbjct: 678 EMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAP 737

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           DVV YNILI   G  G I +    L  M    C  +  T+  L+   L+
Sbjct: 738 DVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLK 786



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 172/372 (46%), Gaps = 47/372 (12%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N++I G+   G + DA ++ + M   GC P+  T +TLI GL      +   +  +E
Sbjct: 324 MTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL-----CDQKTEEAEE 378

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLC-----------KDRLVDQTKDLFMEMKDKGINA 133
           ++N     G  + P V  + +LI+G C           K++++     L +++  K IN+
Sbjct: 379 LLNNAVKEG--FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINS 436

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L KK +L EA  LL  +   GL P + TYT +++GYC  GKV++A+ +   M R G 
Sbjct: 437 ---LIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 493

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
            P+ ++Y+ L+ G  K+  + +AM +  +M  +G                         +
Sbjct: 494 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 553

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F  M+   + P+     +  D LCK G   E         ++  +++   + +LI G  
Sbjct: 554 LFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVY---YTTLIDGFS 610

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A+ L  ++  +    D   Y++L+HAL K+ ++ +   +L  M   G    + 
Sbjct: 611 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 670

Query: 351 TFNTLMISFLQK 362
            +  L+   L++
Sbjct: 671 AYTILIDEMLRE 682



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 147/344 (42%), Gaps = 31/344 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF +LI G+CM     DA ++  KM +  C+ ++     LI  L +       LK  +E
Sbjct: 393 VTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDR----LKEAKE 448

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++N +   G +  PNV  Y S+IDG CK   VD   ++   M+  G   N          
Sbjct: 449 LLNEISANGLV--PNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYG 506

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K  KL +A  LL  M + G+ P + TYT LL G C     + A  LF+ M + G  PD
Sbjct: 507 LVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPD 566

Query: 197 VFSYSVLINGYCKNFNVEEAMN-VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
             +Y+VL +  CK    EEA + + R+ +     K++                  IDG  
Sbjct: 567 EHAYAVLTDALCKAGRAEEAYSFIVRKGV--ALTKVYY--------------TTLIDGFS 610

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G+      L   +    C      ++ L+   CK      A  + +++S + +   + 
Sbjct: 611 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 670

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           AY ILI  + +EG+      +   M  +G      T+   + S+
Sbjct: 671 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSY 714



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 148/344 (43%), Gaps = 33/344 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ ++  LI+G C    +R A  L   M   GC PNV     LI+GL ++G +     L 
Sbjct: 252 NEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLF 311

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKG------INAN 134
             M  NG+        P+V  Y ++I G  K  R+ D  K    E+ +K          N
Sbjct: 312 DAMPQNGV-------VPSVMTYNAMIVGYSKLGRMNDALK--IKELMEKNGCHPDDWTYN 362

Query: 135 TL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           TL   LC + K  EA  LL   ++ G  P + T+T L+NGYC+  K + A+ + + M   
Sbjct: 363 TLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSS 421

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
               D+  +  LIN   K   ++EA            K++ NE+    +VP   T    I
Sbjct: 422 KCKLDLQVFGKLINSLIKKDRLKEA------------KELLNEISANGLVPNVITYTSII 469

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           DG CK+G V   +E+   +E   C+     +NSL+ G  K      A  L  K+    ++
Sbjct: 470 DGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGII 529

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
            +V+ Y  L+     E        L   ME+NG   D   +  L
Sbjct: 530 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVL 573



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 156/384 (40%), Gaps = 62/384 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+NSL+ G   +  +  A  L+ KM   G  PNV T  TL+ G     + +   +L 
Sbjct: 496 NAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLF 555

Query: 83  QEM-VNGMGDFGGIYK--PNVFC-----------------------YGSLIDGLCKDRLV 116
           + M  NG+      Y    +  C                       Y +LIDG  K    
Sbjct: 556 EMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNT 615

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           D    L   M D+G   ++         LCK+ +L EA  +L+ M  RG+   IF YT L
Sbjct: 616 DFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTIL 675

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           ++     GK + A  +++ M   G  P   +Y+V IN YCK   +E+A ++  +M   G 
Sbjct: 676 IDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREG- 734

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE----LFVEIFNS 284
                      V P+  T NI IDG    G++         +  ++CE     +  +   
Sbjct: 735 -----------VAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKH 783

Query: 285 LIRGCCKF-------GIF-----EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           L++G   +       G++     +I  +L  ++    L   V  Y+ LI    K G++++
Sbjct: 784 LLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEE 843

Query: 333 ENYLLLSMEENGCALDVDTFNTLM 356
              LL  M   G + + D +  L+
Sbjct: 844 ACLLLDHMCGKGLSPNEDIYTLLI 867



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 146/347 (42%), Gaps = 24/347 (6%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           SFI R    L  V + +LI GF   GN   A+ L+++M   GC P+  T   L+  L + 
Sbjct: 588 SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQ 647

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
             +N  L +  +M        GI K  +F Y  LID + ++   D  K ++ EM   G  
Sbjct: 648 KRLNEALPILDQM-----SLRGI-KCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHK 701

Query: 133 ANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            +           CK+ +L +A  L+  M + G+ P + TY  L++G   +G ++ A + 
Sbjct: 702 PSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFST 761

Query: 185 FDSMARKGFMPDVFSYSVLIN-------GYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
              M      P+ ++Y +L+         Y ++ +     N+   + L+   ++   M  
Sbjct: 762 LKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNL---IELDITWQLLERMVK 818

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             + P   T +  I G CK G + E   L   +         +I+  LI+ CC    FE 
Sbjct: 819 HGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEK 878

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           A    + +S       + +Y +L+  L  EG  +K   L   + E G
Sbjct: 879 ALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELG 925



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 12/209 (5%)

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           R+   ++Q GL P   TY  ++  YC  G +  A   F  +   G  P+ F+ + L+ GY
Sbjct: 169 RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGY 228

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C+   + +A  +   M L G ++  NE          ++  I I GLC    V + + LF
Sbjct: 229 CRTGELRKACWLFLMMPLMGCQR--NE----------YSYTILIQGLCDAKCVRKALVLF 276

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             ++   C   V  F  LI G CK G    A  LF+ +    +V  V+ YN +I    K 
Sbjct: 277 LMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKL 336

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
           G++     +   ME+NGC  D  T+NTL+
Sbjct: 337 GRMNDALKIKELMEKNGCHPDDWTYNTLI 365



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 12/176 (6%)

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           ++  + + G +PD  +Y+ +I  YCK  ++  A    R ++  G +            PE
Sbjct: 170 VYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLE------------PE 217

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
           TFTCN  + G C+ G + +   LF  + +  C+     +  LI+G C       A  LF 
Sbjct: 218 TFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFL 277

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +       +V A+  LI  L K G++     L  +M +NG    V T+N +++ +
Sbjct: 278 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY 333


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 162/324 (50%), Gaps = 28/324 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           N VT N  +K  C E    + ++ VK++    G  P++ T  TLI    + G+++  L  
Sbjct: 379 NQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGAL-- 436

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
             EM+  MG  G   K N     +++D LCK+R VD+  +L      +G     +   TL
Sbjct: 437 --EMMREMGQKG--IKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTL 492

Query: 137 LC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +    ++ K+ +A  + + M +  + P + T+  L+ G C  GK  +A+  FD +A  G 
Sbjct: 493 IMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGL 552

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PD  +++ +I GYCK   VE+A     E I + FK            P+ +TCNI ++G
Sbjct: 553 LPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFK------------PDNYTCNILLNG 600

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G   + +  F TL I+  E+    +N++I   CK    + A +L +++  K L  D
Sbjct: 601 LCKEGMTEKALNFFNTL-ITEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPD 659

Query: 314 VVAYNILIHALGKEGQIKKENYLL 337
              YN +I +L ++G++ + + LL
Sbjct: 660 RFTYNSIITSLMEDGKLSEADELL 683



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 183/408 (44%), Gaps = 78/408 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+L+ G+C  G++++A Q+V+ M      P++ T + LI G+   G++   L   
Sbjct: 274 NRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGL--- 330

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            E+++ M       +P+V  Y +LIDG  +  L  + K L  +M++ G+  N +      
Sbjct: 331 -ELMDVMKSLK--LQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISL 387

Query: 137 --LCKKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             LCK+ K  E  R + EL+   G +P I TY  L+  Y  VG ++ A+ +   M +KG 
Sbjct: 388 KWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGI 447

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNV------------------------SREMILNGFK 229
             +  + + +++  CK   V+EA N+                          E +   F+
Sbjct: 448 KMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFE 507

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE--IFNSLIR 287
            +++EMK   + P   T N  I GLC +G     ME F   E++   L  +   FNS+I 
Sbjct: 508 -MWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFD--ELAESGLLPDDCTFNSIIL 564

Query: 288 GCCKFGIFEIASELFNK----------LSCKNLV------------------------AD 313
           G CK G  E A E +N+           +C  L+                         D
Sbjct: 565 GYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREVD 624

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            V YN +I A  K+ ++K+   LL  MEE     D  T+N+++ S ++
Sbjct: 625 TVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLME 672



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 171/376 (45%), Gaps = 36/376 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +   F+  +  +   G    A Q+ +KM     +PN+ TC+TL+ GL R  + + ++ 
Sbjct: 128 PPSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPS-SFSIA 186

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK------GINAN 134
             +E+ + M   G     +V  +  L++G C +  ++    +   M  +       +  N
Sbjct: 187 SAREVFDDMVKIG--VSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYN 244

Query: 135 TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           T+L    KK +L +   LL  M + GL P   TY  L+ GYC +G +  A  + + M + 
Sbjct: 245 TILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT 304

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMN--------------VSREMILNG---------F 228
             +PD+ +Y++LING C   ++ E +               V+   +++G          
Sbjct: 305 NILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEA 364

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL-EISNCELFVEIFNSLIR 287
           KK+  +M+   V P   T NI +  LCK     EV      L E+      +  +++LI+
Sbjct: 365 KKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIK 424

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
              K G    A E+  ++  K +  + +  N ++ AL KE ++ + + LL S  + G  +
Sbjct: 425 AYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIV 484

Query: 348 DVDTFNTLMISFLQKE 363
           D  T+ TL++ + ++E
Sbjct: 485 DEVTYGTLIMGYFREE 500



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 139/332 (41%), Gaps = 59/332 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A     S  +R Y  +++VT+ +LI G+  E  +  A ++  +M      P VTT 
Sbjct: 466 KVDEAHNLLDSAHKRGYI-VDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTF 524

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           ++LI GL   G   L ++   E+        G+  P+   + S+I G CK+  V++  + 
Sbjct: 525 NSLIGGLCHHGKTELAMEKFDELAE-----SGLL-PDDCTFNSIILGYCKEGRVEKAFEF 578

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           + E                            ++    P  +T   LLNG C  G    A+
Sbjct: 579 YNE---------------------------SIKHSFKPDNYTCNILLNGLCKEGMTEKAL 611

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
             F+++  +  + D  +Y+ +I+ +CK+  ++EA +            + +EM+   + P
Sbjct: 612 NFFNTLITEREV-DTVTYNTMISAFCKDKKLKEAYD------------LLSEMEEKRLEP 658

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           + FT N  I  L ++G + E  EL         + F   F S+ R        E      
Sbjct: 659 DRFTYNSIITSLMEDGKLSEADELL--------KKFSGKFGSMKRNLH----LETEKNPA 706

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
              S + L  + +AY+ +I+ L   G++K+ +
Sbjct: 707 TSESKEELKTEAIAYSDVINELCSRGRLKEHS 738


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 167/349 (47%), Gaps = 27/349 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N++IK +C EG++  A +  + +   G  P   TC+ L+ G  RTG +     L 
Sbjct: 67  DTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLF 126

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             M+  MG      + N + Y  LI GLC  + V +   LF+ MK  G + N        
Sbjct: 127 L-MMPLMG-----CQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLI 180

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ +A  L + M Q G+ P + TY  ++ GY  +G++N A+ + + M + G  
Sbjct: 181 SGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCH 240

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD ++Y+ LI G C     EEA     E++ N  K+ F         P   T    I+G 
Sbjct: 241 PDDWTYNTLIYGLCDQ-KTEEA----EELLNNAVKEGF--------TPTVVTFTNLINGY 287

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C      + + +   +  S C+L +++F  LI    K    + A EL N++S   LV +V
Sbjct: 288 CMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNV 347

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + Y  +I    K G++     +L  ME +GC  +  T+N+LM   ++ +
Sbjct: 348 ITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDK 396



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 156/349 (44%), Gaps = 33/349 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+ S+I G+C  G +  A +++K M   GC+PN  T ++L+ GL +        KLH
Sbjct: 346 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDK------KLH 399

Query: 83  QEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT----- 135
           + M  +  M   G I  PNV  Y +L+ G C +   D    LF  M+  G+  +      
Sbjct: 400 KAMALLTKMQKDGII--PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAV 457

Query: 136 ---LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  +  EA      ++++G+      YT L++G+   G  + A  L + M  +G
Sbjct: 458 LTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEG 514

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD ++YSVL++  CK   + EA+ +  +M L G K        C +    F   I ID
Sbjct: 515 CTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIK--------CTI----FAYTILID 562

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            + + G       ++  +  S  +     +   I   CK G  E A +L  K+  + +  
Sbjct: 563 EMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAP 622

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           DVV YNILI   G  G I +    L  M    C  +  T+  L+   L+
Sbjct: 623 DVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLK 671



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 172/372 (46%), Gaps = 47/372 (12%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N++I G+   G + DA ++ + M   GC P+  T +TLI GL      +   +  +E
Sbjct: 209 MTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL-----CDQKTEEAEE 263

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLC-----------KDRLVDQTKDLFMEMKDKGINA 133
           ++N     G  + P V  + +LI+G C           K++++     L +++  K IN+
Sbjct: 264 LLNNAVKEG--FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINS 321

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L KK +L EA  LL  +   GL P + TYT +++GYC  GKV++A+ +   M R G 
Sbjct: 322 ---LIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 378

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
            P+ ++Y+ L+ G  K+  + +AM +  +M  +G                         +
Sbjct: 379 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 438

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F  M+   + P+     +  D LCK G   E         ++  +++   + +LI G  
Sbjct: 439 LFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVY---YTTLIDGFS 495

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A+ L  ++  +    D   Y++L+HAL K+ ++ +   +L  M   G    + 
Sbjct: 496 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 555

Query: 351 TFNTLMISFLQK 362
            +  L+   L++
Sbjct: 556 AYTILIDEMLRE 567



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 149/347 (42%), Gaps = 31/347 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF +LI G+CM     DA ++  KM +  C+ ++     LI  L +       LK  +E
Sbjct: 278 VTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDR----LKEAKE 333

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++N +   G +  PNV  Y S+IDG CK   VD   ++   M+  G   N          
Sbjct: 334 LLNEISANGLV--PNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYG 391

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K  KL +A  LL  M + G+ P + TYT LL G C     + A  LF+ M + G  PD
Sbjct: 392 LVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPD 451

Query: 197 VFSYSVLINGYCKNFNVEEAMN-VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
             +Y+VL +  CK    EEA + + R+ +     K++                  IDG  
Sbjct: 452 EHAYAVLTDALCKAGRAEEAYSFIVRKGV--ALTKVYY--------------TTLIDGFS 495

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G+      L   +    C      ++ L+   CK      A  + +++S + +   + 
Sbjct: 496 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 555

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           AY ILI  + +EG+      +   M  +G      T+   + S+ ++
Sbjct: 556 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKE 602



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 148/344 (43%), Gaps = 33/344 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ ++  LI+G C    +R A  L   M   GC PNV     LI+GL ++G +     L 
Sbjct: 137 NEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLF 196

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKG------INAN 134
             M  NG+        P+V  Y ++I G  K  R+ D  K    E+ +K          N
Sbjct: 197 DAMPQNGV-------VPSVMTYNAMIVGYSKLGRMNDALK--IKELMEKNGCHPDDWTYN 247

Query: 135 TL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           TL   LC + K  EA  LL   ++ G  P + T+T L+NGYC+  K + A+ + + M   
Sbjct: 248 TLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSS 306

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
               D+  +  LIN   K   ++EA            K++ NE+    +VP   T    I
Sbjct: 307 KCKLDLQVFGKLINSLIKKDRLKEA------------KELLNEISANGLVPNVITYTSII 354

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           DG CK+G V   +E+   +E   C+     +NSL+ G  K      A  L  K+    ++
Sbjct: 355 DGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGII 414

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
            +V+ Y  L+     E        L   ME+NG   D   +  L
Sbjct: 415 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVL 458



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 156/384 (40%), Gaps = 62/384 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+NSL+ G   +  +  A  L+ KM   G  PNV T  TL+ G     + +   +L 
Sbjct: 381 NAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLF 440

Query: 83  QEM-VNGMGDFGGIYK--PNVFC-----------------------YGSLIDGLCKDRLV 116
           + M  NG+      Y    +  C                       Y +LIDG  K    
Sbjct: 441 EMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNT 500

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           D    L   M D+G   ++         LCK+ +L EA  +L+ M  RG+   IF YT L
Sbjct: 501 DFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTIL 560

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           ++     GK + A  +++ M   G  P   +Y+V IN YCK   +E+A ++  +M   G 
Sbjct: 561 IDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREG- 619

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE----LFVEIFNS 284
                      V P+  T NI IDG    G++         +  ++CE     +  +   
Sbjct: 620 -----------VAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKH 668

Query: 285 LIRGCCKF-------GIF-----EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           L++G   +       G++     +I  +L  ++    L   V  Y+ LI    K G++++
Sbjct: 669 LLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEE 728

Query: 333 ENYLLLSMEENGCALDVDTFNTLM 356
              LL  M   G + + D +  L+
Sbjct: 729 ACLLLDHMCGKGLSPNEDIYTLLI 752



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 146/347 (42%), Gaps = 24/347 (6%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           SFI R    L  V + +LI GF   GN   A+ L+++M   GC P+  T   L+  L + 
Sbjct: 473 SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQ 532

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
             +N  L +  +M        GI K  +F Y  LID + ++   D  K ++ EM   G  
Sbjct: 533 KRLNEALPILDQM-----SLRGI-KCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHK 586

Query: 133 ANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            +           CK+ +L +A  L+  M + G+ P + TY  L++G   +G ++ A + 
Sbjct: 587 PSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFST 646

Query: 185 FDSMARKGFMPDVFSYSVLIN-------GYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
              M      P+ ++Y +L+         Y ++ +     N+   + L+   ++   M  
Sbjct: 647 LKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNL---IELDITWQLLERMVK 703

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             + P   T +  I G CK G + E   L   +         +I+  LI+ CC    FE 
Sbjct: 704 HGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEK 763

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           A    + +S       + +Y +L+  L  EG  +K   L   + E G
Sbjct: 764 ALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELG 810



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 12/209 (5%)

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           R+   ++Q GL P   TY  ++  YC  G +  A   F  +   G  P+ F+ + L+ GY
Sbjct: 54  RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGY 113

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C+   + +A  +   M L G ++  NE          ++  I I GLC    V + + LF
Sbjct: 114 CRTGELRKACWLFLMMPLMGCQR--NE----------YSYTILIQGLCDAKCVRKALVLF 161

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             ++   C   V  F  LI G CK G    A  LF+ +    +V  V+ YN +I    K 
Sbjct: 162 LMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKL 221

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
           G++     +   ME+NGC  D  T+NTL+
Sbjct: 222 GRMNDALKIKELMEKNGCHPDDWTYNTLI 250



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 12/176 (6%)

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           ++  + + G +PD  +Y+ +I  YCK  ++  A    R ++  G +            PE
Sbjct: 55  VYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLE------------PE 102

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
           TFTCN  + G C+ G + +   LF  + +  C+     +  LI+G C       A  LF 
Sbjct: 103 TFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFL 162

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +       +V A+  LI  L K G++     L  +M +NG    V T+N +++ +
Sbjct: 163 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY 218


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 159/312 (50%), Gaps = 26/312 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P++ +T+N+LI GFC EG +    +L ++M   G +P++ T + L+ GL   G ++  +K
Sbjct: 520 PMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIK 579

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--- 137
           L  E         G+   N+  YG +++G CK   ++  ++LF E+  K +  N+++   
Sbjct: 580 LWDEF-----KASGLIS-NIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNI 633

Query: 138 -----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                C+   +  A +LLE M  +G+ P   TY+ L++G C +G V  A  L D M ++G
Sbjct: 634 IIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEG 693

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F+P+V  Y+ LI GYCK   ++ A +   EMI   F          N+ P  FT  + ID
Sbjct: 694 FVPNVVCYTALIGGYCKLGQMDTAESTWLEMI--SF----------NIHPNKFTYTVMID 741

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CK G++ +   L   ++ S     V  +N L  G CK    + A ++ ++++ + L  
Sbjct: 742 GYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPV 801

Query: 313 DVVAYNILIHAL 324
           D + Y  L+H  
Sbjct: 802 DEITYTTLVHGW 813



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 179/420 (42%), Gaps = 73/420 (17%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GAL      I +   P   VT  SL++GFC    I  A   ++++ + G   +   C ++
Sbjct: 366 GALKIKDVMISKNITP-TSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSV 424

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L +    +   +  + M++        ++P+      L+ GLCKD    +  +L+  
Sbjct: 425 VHWLCKKFRYHSAFRFTKMMLSRN------FRPSDLLLTMLVCGLCKDGKHLEATELWFR 478

Query: 126 MKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           + +KG     + +N L   LC   KL EA+R+++ M++RGL     TY  L+ G+C  GK
Sbjct: 479 LLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGK 538

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------- 228
           V     L + M ++G  PD+++Y+ L+ G C    +++A+ +  E   +G          
Sbjct: 539 VEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGI 598

Query: 229 --------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
                         + +FNE+    +   +   NI I   C+NG+V   ++L   ++   
Sbjct: 599 MMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKG 658

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI---- 330
                  ++SLI G C  G+ E A  L +++  +  V +VV Y  LI    K GQ+    
Sbjct: 659 ILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAE 718

Query: 331 -------------------------------KKENYLLLSMEENGCALDVDTFNTLMISF 359
                                          +K N LL+ M+E+G   DV T+N L   F
Sbjct: 719 STWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGF 778



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 160/394 (40%), Gaps = 60/394 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I G C  G + +A +L +KM   G +PN+ T   LI GL +    +    + 
Sbjct: 277 NVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVL 336

Query: 83  QEMVNG------------------MGDFGGIYK-----------PNVFCYGSLIDGLCKD 113
            EM+                    MG+  G  K           P      SL+ G CK 
Sbjct: 337 DEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKS 396

Query: 114 RLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             ++  ++   E+   G++ +          LCKK +   A R  ++M+ R   P     
Sbjct: 397 DQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLL 456

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L+ G C  GK   A  L+  +  KG      + + LI+G C    + EA  + +EM+ 
Sbjct: 457 TMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLE 516

Query: 226 NGFK-----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
            G                         ++  EM    + P+ +T N  + GLC  G + +
Sbjct: 517 RGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDD 576

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            ++L+   + S     +  +  ++ G CK    E    LFN+L  K +  + + YNI+I 
Sbjct: 577 AIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIK 636

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A  + G +     LL +M+  G   +  T+++L+
Sbjct: 637 AHCQNGNVAAALQLLENMKSKGILPNCATYSSLI 670



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 150/376 (39%), Gaps = 95/376 (25%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
           D   L+ +  TF   P++ TC+ L++ L +        ++ + M  G         P+VF
Sbjct: 195 DVFYLLARKGTF---PSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGAC-------PDVF 244

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPV 161
            + ++I+ LCK   ++   +LFM+M+  GI+                           P 
Sbjct: 245 SFTNVINALCKGGKMENAIELFMKMEKLGIS---------------------------PN 277

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           + TY  ++NG C  G+++ A  L + M  KG  P++ +Y  LING  K    ++  +V  
Sbjct: 278 VVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLD 337

Query: 222 EMILNGFK-----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           EMI +GF                        KI + M   N+ P + T    + G CK+ 
Sbjct: 338 EMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSD 397

Query: 259 HV-------LEVMELFPTLEISNCELFVEI------FNSLIR------------------ 287
            +        E++    ++   NC   V        ++S  R                  
Sbjct: 398 QIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLT 457

Query: 288 ----GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
               G CK G    A+EL+ +L  K   A  V  N LIH L   G++ + + ++  M E 
Sbjct: 458 MLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLER 517

Query: 344 GCALDVDTFNTLMISF 359
           G  +D  T+N L++ F
Sbjct: 518 GLPMDRITYNALILGF 533



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 16/264 (6%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ 155
           ++  +  Y +LI  L + + +   + L + + D  +    L  +K  +  AN L  L   
Sbjct: 105 FRFTIHSYCTLILLLIRSKFIPPARLLLIRLIDGNLPVLNLDSEKFHIEIANALFGLTSV 164

Query: 156 RGLNPVIFTYTPLLNGYCLVGK---VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
            G       +  L++ Y    +    + A+ +F  +ARKG  P + + + L++   K   
Sbjct: 165 VGRFEWTQAFDLLIHVYSTQFRNLGFSCAVDVFYLLARKGTFPSLKTCNFLLSSLVKANE 224

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
            E+   V R M                  P+ F+    I+ LCK G +   +ELF  +E 
Sbjct: 225 FEKCCEVFRVMSEGA-------------CPDVFSFTNVINALCKGGKMENAIELFMKMEK 271

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 V  +N +I G C+ G  + A EL  K++ K +  ++  Y  LI+ L K     K
Sbjct: 272 LGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDK 331

Query: 333 ENYLLLSMEENGCALDVDTFNTLM 356
            N++L  M  +G   +V  FN L+
Sbjct: 332 VNHVLDEMIGSGFNPNVVVFNNLI 355


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 144/323 (44%), Gaps = 36/323 (11%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDAS-QLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           P    + N LIK  C      DA  ++  +M   GC P+  T  TLI+GL R G ++   
Sbjct: 153 PPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAK 212

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           KL  EMV           P V  Y SLI+GLC  + VD+      EMK KGI  N     
Sbjct: 213 KLFTEMVEK------DCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYS 266

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  + ++A  L E+MM RG  P + TYT L+ G C   K+  A+ L D M  +
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ 326

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PD   Y  +I+G+C      EA N   EMIL G            + P   T NI +
Sbjct: 327 GLKPDAGLYGKVISGFCAISKFREAANFLDEMILGG------------ITPNRLTWNIHV 374

Query: 252 D-------GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
                   GLC N +      L+ ++      + VE   SL++  CK G F+ A +L ++
Sbjct: 375 KTSNEVVRGLCAN-YPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDE 433

Query: 305 LSCKNLVADVVAYNILI-HALGK 326
           +     +     + +LI H L K
Sbjct: 434 IVTDGCIPSKGTWKLLIGHTLDK 456



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 153/343 (44%), Gaps = 33/343 (9%)

Query: 29  SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
           S+ +G+       D+ ++  KM  F C P+     T++  L     +NL  K ++     
Sbjct: 91  SICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYK----N 146

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL--------LCK 139
           M + G    P V     LI  LC+ D  VD    +F+EM  +G + ++         LC+
Sbjct: 147 MREIG--LPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCR 204

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             ++ EA +L   M+++   P + TYT L+NG C    V+ A+   + M  KG  P+VF+
Sbjct: 205 FGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFT 264

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           YS L++G CK+    +AM +   M+  G +            P   T    I GLCK   
Sbjct: 265 YSSLMDGLCKDGRSLQAMELFEMMMARGCR------------PNMVTYTTLITGLCKEQK 312

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + E +EL   + +   +    ++  +I G C    F  A+   +++    +  + + +NI
Sbjct: 313 IQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNI 372

Query: 320 LIHALGKEGQIKKENY------LLLSMEENGCALDVDTFNTLM 356
            +    +  +    NY      L LSM   G +++V+T  +L+
Sbjct: 373 HVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLV 415



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 25/270 (9%)

Query: 92  FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-INANTLLCKKTKLVEANRLL 150
           +G +++P    + SL       R+  + KD   +   K  +    +L ++ +L  A +  
Sbjct: 96  YGRVHRP----FDSL-------RVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFY 144

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCL-VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           + M + GL P + +   L+   C   G V+  + +F  M ++G  PD ++Y  LI+G C+
Sbjct: 145 KNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCR 204

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              ++EA            KK+F EM   +  P   T    I+GLC + +V E M     
Sbjct: 205 FGRIDEA------------KKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEE 252

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           ++    E  V  ++SL+ G CK G    A ELF  +  +    ++V Y  LI  L KE +
Sbjct: 253 MKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQK 312

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           I++   LL  M   G   D   +  ++  F
Sbjct: 313 IQEAVELLDRMNLQGLKPDAGLYGKVISGF 342



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           R+   M     +P    Y  +L       ++N+A   + +M   G  P V S +VLI   
Sbjct: 107 RVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKAL 166

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C+N    +A          G K IF EM      P+++T    I GLC+ G + E  +LF
Sbjct: 167 CRNDGTVDA----------GLK-IFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLF 215

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +   +C   V  + SLI G C     + A     ++  K +  +V  Y+ L+  L K+
Sbjct: 216 TEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKD 275

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           G+  +   L   M   GC  ++ T+ TL+    +++
Sbjct: 276 GRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQ 311


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 160/340 (47%), Gaps = 45/340 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+  FC EG IR A  +   +  +G RP+V + +TL+ G  + G++N
Sbjct: 133 ECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 192

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L + M        G+ +P+V+ Y  LI+GLCK+                       
Sbjct: 193 EXFRLKKAM-----QASGV-QPDVYTYSVLINGLCKE----------------------- 223

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
               +K+ + N L + M+  GL P   T+T L++G+C  G+V++A+ ++  M  +   PD
Sbjct: 224 ----SKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 279

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CK  ++++A ++  EM + G K            P+  T    IDG CK
Sbjct: 280 LVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK------------PDKITYTTLIDGSCK 327

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  
Sbjct: 328 EGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 387

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y ++I+   K+G +   + L+  M+ +G    V T+N LM
Sbjct: 388 YTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLM 427



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ +I  +   G +RDA +  +       R    TC  ++  L +     L    ++E +
Sbjct: 73  FSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 132

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKT 141
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 133 ECG------YPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 186

Query: 142 KLVEAN---RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           KL + N   RL + M   G+ P ++TY+ L+NG C   K++    LFD M   G +P+  
Sbjct: 187 KLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGV 246

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 247 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLVTYNTLIYGLCKKG 294

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D VAY 
Sbjct: 295 DLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYT 354

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   ++ T+  ++  F +K
Sbjct: 355 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 398



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 13/227 (5%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ ++  A  + + + + GL P + ++  L+NGY  +G +N    L  +M   G  PD
Sbjct: 150 FCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPD 209

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V++YSVLING CK            E  ++   ++F+EM    +VP   T    IDG CK
Sbjct: 210 VYTYSVLINGLCK------------ESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCK 257

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG V   ME++  +   +    +  +N+LI G CK G  + A +L +++S K L  D + 
Sbjct: 258 NGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 317

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y  LI    KEG ++        M +    LD D   T +IS L +E
Sbjct: 318 YTTLIDGSCKEGDLETAFEYRXRMIKENIRLD-DVAYTALISGLCQE 363



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 244 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGD----LKQA 299

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           Q++++ M   G   KP+   Y +LIDG CK+  ++   +    M  + I  + +      
Sbjct: 300 QDLIDEMSMKG--LKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALI 357

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+  GL P I TYT ++N +C  G V     L   M R G++
Sbjct: 358 SGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYV 417

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 418 PSVVTYNVLMNG 429


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 168/355 (47%), Gaps = 40/355 (11%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
            AL   G  ++    P + VT +SL+ GFC+  +I+DA  +  +M   G + +V     L
Sbjct: 66  SALSYLGKMMKLGIEP-DIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTIL 124

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFM 124
           I  L +    N  +    E++  M D G    PNV  Y SLI GLCK  RL D  + L  
Sbjct: 125 IDTLCK----NRLVVPALEVLKRMKDRG--ISPNVVTYSSLITGLCKSGRLADAERRLH- 177

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           EM  K IN N +          K+ KL + + + ++M+Q  ++P +FTY+ L+ G C+  
Sbjct: 178 EMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHN 237

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK------ 230
           +V+ AI + D M  KG  P+V +YS L NG+ K+  V++ + +  +M   G         
Sbjct: 238 RVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCN 297

Query: 231 -----------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
                            +F  M    ++P   + NI + GL  NG V + +  F  ++ +
Sbjct: 298 TLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKT 357

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
             +L +  +  +I G CK  + + A +LF KL  K +  D  AY I+I  L + G
Sbjct: 358 RNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAG 412



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 138/331 (41%), Gaps = 45/331 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T N L+  FC       A   + KM   G  P++ T  +L+ G   + ++   + +  +M
Sbjct: 50  TCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQM 109

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
              MG      K +V     LID LCK+RLV                           V 
Sbjct: 110 -EKMG-----IKRDVVVDTILIDTLCKNRLV---------------------------VP 136

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  +L+ M  RG++P + TY+ L+ G C  G++  A      M  K   P+V ++S LI+
Sbjct: 137 ALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALID 196

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
            Y K   + +  +V + MI              ++ P  FT +  I GLC +  V E ++
Sbjct: 197 AYAKRGKLSKVDSVYKMMIQ------------MSIDPNVFTYSSLIYGLCMHNRVDEAIK 244

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +   +    C   V  +++L  G  K    +   +L + +  + + A+ V+ N LI    
Sbjct: 245 MLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYF 304

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + G+I     +   M  NG   ++ ++N ++
Sbjct: 305 QAGKIDLALGVFGYMTSNGLIPNIRSYNIVL 335



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 104/199 (52%), Gaps = 12/199 (6%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           ++P ++T   L+N +C   + + A++    M + G  PD+ + S L+NG+C + ++++A+
Sbjct: 44  ISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAV 103

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            V+ +M   G K+        +VV +T    I ID LCKN  V+  +E+   ++      
Sbjct: 104 YVAGQMEKMGIKR--------DVVVDT----ILIDTLCKNRLVVPALEVLKRMKDRGISP 151

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  ++SLI G CK G    A    +++  K +  +V+ ++ LI A  K G++ K + + 
Sbjct: 152 NVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVY 211

Query: 338 LSMEENGCALDVDTFNTLM 356
             M +     +V T+++L+
Sbjct: 212 KMMIQMSIDPNVFTYSSLI 230



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 23/275 (8%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-KGINANTLL----------CKKTKLVEA 146
           P++  +  ++  + K ++ D   +L+  +++ +GI  +  L          C+  +   A
Sbjct: 8   PSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSA 67

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
              L  MM+ G+ P I T + L+NG+CL   +  A+ +   M + G   DV   ++LI+ 
Sbjct: 68  LSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDT 127

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            CKN  V  A+ V + M   G            + P   T +  I GLCK+G + +    
Sbjct: 128 LCKNRLVVPALEVLKRMKDRG------------ISPNVVTYSSLITGLCKSGRLADAERR 175

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              ++       V  F++LI    K G       ++  +   ++  +V  Y+ LI+ L  
Sbjct: 176 LHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCM 235

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             ++ +   +L  M   GC  +V T++TL   F +
Sbjct: 236 HNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFK 270


>gi|356561399|ref|XP_003548969.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 422

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 168/360 (46%), Gaps = 54/360 (15%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           VLG ++  G      Y+P N +T  +LIKG C++  +R +     K+   G + N  +C 
Sbjct: 111 VLGKILKLG------YQP-NTLTLTTLIKGLCLKDEVRKSLHFHDKLVAQGFQINHVSCG 163

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           TL+ GL + G M   +KL    +  + D   I   NV  Y ++IDGLCKD+LV++  DL+
Sbjct: 164 TLLNGLCKIGEMRGAMKL----LRVIEDRSTI--TNVVMYNTIIDGLCKDKLVNEAYDLY 217

Query: 124 MEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
            EM                             RG  P + TY  L+ G+CL G++  A  
Sbjct: 218 SEMD---------------------------VRGNFPNVITYHTLICGFCLAGQLMEAFG 250

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           L   M  K   PDV++Y++L++  CK           +   L+   +I    +  +VV  
Sbjct: 251 LLKEMILKNIDPDVYTYNILMDALCKE---------GKSYALDLIDEIHRRRQPADVV-- 299

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
           T+T    +DG CKN ++ + + LF  ++    +  V   +S + GC K G  + A E F 
Sbjct: 300 TYTS--LLDGXCKNXYLDKAIALFKKMKERRIQPNVYT-HSXLTGCVKGGRLKNAQEFFQ 356

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            L  K    DV  Y ++I  L KEG + +   +   ME+NGC  +  TF  ++ S  +K+
Sbjct: 357 HLLVKGYCIDVWTYTVMISGLCKEGMLDEALAMKXKMEDNGCIPNAVTFEIIICSLFEKD 416



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 116/253 (45%), Gaps = 15/253 (5%)

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL---VEANRLLELMMQRGLNPVIF 163
           ID +  D +    + L M      I  N +L    K+     A  L + M  +G+ P + 
Sbjct: 31  IDNVVDDAVSQFNRMLLMRHTPPIIKFNKILGSPVKMKYYPAAISLSKQMEVKGIEPNLV 90

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           T   L+N +C +G +  + ++   + + G+ P+  + + LI G C    V ++++   ++
Sbjct: 91  TLNILINCFCHLGHMAFSFSVLGKILKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFHDKL 150

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
           +  GF+   N +          +C   ++GLCK G +   M+L   +E  +    V ++N
Sbjct: 151 VAQGFQ--INHV----------SCGTLLNGLCKIGEMRGAMKLLRVIEDRSTITNVVMYN 198

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           ++I G CK  +   A +L++++  +    +V+ Y+ LI      GQ+ +   LL  M   
Sbjct: 199 TIIDGLCKDKLVNEAYDLYSEMDVRGNFPNVITYHTLICGFCLAGQLMEAFGLLKEMILK 258

Query: 344 GCALDVDTFNTLM 356
               DV T+N LM
Sbjct: 259 NIDPDVYTYNILM 271


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 159/341 (46%), Gaps = 28/341 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+  LI   C  G +  A +L  KM     +P++ T  TL++     G++    +   E
Sbjct: 298 VTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSE 357

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLLC 138
           M  +G       Y P+V  Y  L++ LCK   VDQ  D+   M+ +GI       NTL+ 
Sbjct: 358 MEADG-------YAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLIS 410

Query: 139 KKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
               L   +  LEL   M   G+ P  ++Y   ++ Y  +G    A+  F+ M ++G MP
Sbjct: 411 GLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMP 470

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
            + + +  +    +   + EA            K IFN++  C + P++ T N+ +    
Sbjct: 471 SIAACNASLYSLAEMGRIREA------------KDIFNDIHNCGLSPDSVTYNMMMKCYS 518

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G + +  +L   +    CE  + + NSLI    K G  + A ++F +L    L   VV
Sbjct: 519 KAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVV 578

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            YNILI  LGKEG++ K   L  SM+E+GC  +  TFN L+
Sbjct: 579 TYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALL 619



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 148/319 (46%), Gaps = 27/319 (8%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P + VT+  L++  C  G +  A  ++  M   G  PN+ T +TLI+GL     ++  
Sbjct: 363 YAP-DVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEA 421

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138
           L    E+ N M   G    P  + Y   ID   K    ++  D F +MK +GI  +   C
Sbjct: 422 L----ELFNNMESLG--VAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAAC 475

Query: 139 KKT--------KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
             +        ++ EA  +   +   GL+P   TY  ++  Y   G+++ A  L   M  
Sbjct: 476 NASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLS 535

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           +G  PD+   + LI+   K   V+EA             ++F  +K   + P   T NI 
Sbjct: 536 EGCEPDIIVVNSLIDTLYKAGRVDEAW------------QMFGRLKDLKLAPTVVTYNIL 583

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           I GL K G +L+ ++LF +++ S C      FN+L+   CK    ++A ++F +++  N 
Sbjct: 584 ITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNC 643

Query: 311 VADVVAYNILIHALGKEGQ 329
             DV+ YN +I+ L KEG+
Sbjct: 644 SPDVLTYNTIIYGLIKEGR 662



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 148/333 (44%), Gaps = 45/333 (13%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N  T+N L+        I +  +L  +M   GC+PN+ T + +I+ L ++ ++N  L L+
Sbjct: 822  NIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLY 881

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             E+++G  DF     P    YG LI GL K    ++   +F EM D         CK   
Sbjct: 882  YEIISG--DF----SPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPD-------YQCK--- 925

Query: 143  LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                             P    Y  L+NG+   G VN+A  LF  M ++G  PD+ SY++
Sbjct: 926  -----------------PNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTI 968

Query: 203  LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
            L+        V++A++             F E+KL  + P+T + N+ I+GL K+  + E
Sbjct: 969  LVECLFMTGRVDDAVHY------------FEELKLTGLDPDTVSYNLMINGLGKSRRLEE 1016

Query: 263  VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             + LF  ++       +  +N+LI      G+ + A ++F +L    L  +V  YN LI 
Sbjct: 1017 ALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIR 1076

Query: 323  ALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
               K G   +   +   M   GC+ +  TF  L
Sbjct: 1077 GHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 151/348 (43%), Gaps = 28/348 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+ ++ K   ++G IR A   + KM   G   N  + + LI  L + G     LK++
Sbjct: 156 NPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVY 215

Query: 83  QEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
           + M++ G+       KP++  Y +L+  L + R      DL  EM+  G+  N       
Sbjct: 216 KRMISEGL-------KPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTIC 268

Query: 136 --LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             +L +  ++ +A  +L+ M   G  P + TYT L++  C  GK++ A  L+  M     
Sbjct: 269 IRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSH 328

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ +Y  L++ +    ++E              K+ ++EM+     P+  T  I ++ 
Sbjct: 329 KPDLVTYITLMSKFGNYGDLETV------------KRFWSEMEADGYAPDVVTYTILVEA 376

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK+G V +  ++   + +      +  +N+LI G       + A ELFN +    +   
Sbjct: 377 LCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPT 436

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             +Y + I   GK G  +K       M++ G    +   N  + S  +
Sbjct: 437 AYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAE 484



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 174/428 (40%), Gaps = 77/428 (17%)

Query: 3    KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            K+L AL  FGS ++    P N VTFN+L+   C    +  A ++  +M    C P+V T 
Sbjct: 592  KLLKALDLFGS-MKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTY 650

Query: 63   DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            +T+I GL + G        + +M            P+     +L+ G+ KD  V+    +
Sbjct: 651  NTIIYGLIKEGRAGYAFWFYHQMKK-------FLSPDHVTLYTLLPGVVKDGRVEDAIKI 703

Query: 123  FMEMKDK-------------------------------GINANTL-------------LC 138
             ME   +                               G+  N++             LC
Sbjct: 704  VMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLC 763

Query: 139  KKTKLVEANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K+ K ++A +L +   +  G +P   +Y  L++G         A+ LF  M   G  P++
Sbjct: 764  KQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNI 823

Query: 198  FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNE 234
            F+Y++L++ + K+  ++E   +  EM+  G K                        ++ E
Sbjct: 824  FTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYE 883

Query: 235  MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
            +   +  P   T    I GL K G   E M++F  +    C+    I+N LI G  K G 
Sbjct: 884  IISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGN 943

Query: 295  FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              IA +LF ++  + +  D+ +Y IL+  L   G++    +    ++  G   D  ++N 
Sbjct: 944  VNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYN- 1002

Query: 355  LMISFLQK 362
            LMI+ L K
Sbjct: 1003 LMINGLGK 1010



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 161/380 (42%), Gaps = 40/380 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I  C    + VT+N ++K +   G I  A++L+ +M + GC P++   ++LI  L + G 
Sbjct: 498 IHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGR 557

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++       +M   + D      P V  Y  LI GL K+  + +  DLF  MK+ G   N
Sbjct: 558 VDEAW----QMFGRLKDLK--LAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPN 611

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           T+        LCK   +  A ++   M     +P + TY  ++ G    G+   A   + 
Sbjct: 612 TVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYH 671

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI----LNGFKKIFNEMKLCNVV- 241
            M +K   PD  +   L+ G  K+  VE+A+ +  E +    L    +++ E+  C ++ 
Sbjct: 672 QM-KKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIE 730

Query: 242 ---------PETFTCN----------IFIDGLCKNGHVLEVMELFPTLEIS-NCELFVEI 281
                     E   CN            I  LCK    L+  +LF     S       E 
Sbjct: 731 AEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPES 790

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N L+ G     I E A +LF ++       ++  YN+L+ A GK  +I +   L   M 
Sbjct: 791 YNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEML 850

Query: 342 ENGCALDVDTFNTLMISFLQ 361
             GC  ++ T N ++ + ++
Sbjct: 851 CRGCKPNIITHNIIISALVK 870



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 27/337 (8%)

Query: 29   SLIKGFCMEGNIRDASQLVKKMA-TFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
             LI+  C +    DA +L  K   + G  P   + + L+ GL         LKL  EM N
Sbjct: 757  PLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKN 816

Query: 88   GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLCKKTK 142
                 G    PN+F Y  L+D   K + +D+  +L+ EM  +G     I  N ++    K
Sbjct: 817  A----GCC--PNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVK 870

Query: 143  LVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
                N+ L+L   ++    +P   TY PL+ G    G+   A+ +F+ M      P+   
Sbjct: 871  SNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAI 930

Query: 200  YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
            Y++LING+ K  NV  A ++ + MI  G +            P+  +  I ++ L   G 
Sbjct: 931  YNILINGFGKAGNVNIACDLFKRMIKEGIR------------PDLKSYTILVECLFMTGR 978

Query: 260  VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
            V + +  F  L+++  +     +N +I G  K    E A  LF+++  + +  ++  YN 
Sbjct: 979  VDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNA 1038

Query: 320  LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            LI   G  G + +   +   ++  G   +V T+N L+
Sbjct: 1039 LILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALI 1075



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 16/192 (8%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N   +N LI GF   GN+  A  L K+M   G RP++ +   L+  L  TG ++  +   
Sbjct: 927  NCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYF 986

Query: 83   QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------NAN 134
            +E+ + G+        P+   Y  +I+GL K R +++   LF EMK++GI       NA 
Sbjct: 987  EELKLTGL-------DPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNAL 1039

Query: 135  TLLCKKTKLV-EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             L      +V +A ++ E +   GL P +FTY  L+ G+   G  + A ++F  M   G 
Sbjct: 1040 ILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGC 1099

Query: 194  MPDVFSYSVLIN 205
             P+  +++ L N
Sbjct: 1100 SPNAGTFAQLPN 1111



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 95/236 (40%), Gaps = 33/236 (13%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI---- 204
           + +LM ++ +N    TY  +     + G +  A      M + GF+ + +SY+ LI    
Sbjct: 144 VFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLL 203

Query: 205 -NGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNV 240
             G+CK     EA+ V + MI  G K                        +  EM+   +
Sbjct: 204 QPGFCK-----EALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGL 258

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P  +T  I I  L + G + +   +  T+E   C   V  +  LI   C  G  + A E
Sbjct: 259 RPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKE 318

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L+ K+   +   D+V Y  L+   G  G ++        ME +G A DV T+  L+
Sbjct: 319 LYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILV 374


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 158/340 (46%), Gaps = 26/340 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +  TFN LI+G C  G +  A ++ K M +FGC P+V T +TLI GL +   +    +
Sbjct: 175 PPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCE 234

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L +E +    D      P++  Y S+I G CK   + +  +LF EM   GI  N +    
Sbjct: 235 LFKE-IQSRSDCS----PDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNV 289

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K   + EA  +   M     +  + T+T L++GYC  G+VN  +  ++ M  + 
Sbjct: 290 LIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRN 349

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P V++Y+VLIN  CK    E  +N +R+ +         ++K  +++P+ F  N  ID
Sbjct: 350 VSPTVYTYAVLINALCK----ENRLNEARDFL--------GQIKNSSIIPKPFMYNPVID 397

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CK G+V E   +   +E   C+     F  LI G C  G    A  +FN++       
Sbjct: 398 GFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAP 457

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           D +  N LI  L K G +  E Y +  M      L + +F
Sbjct: 458 DNITVNSLISCLLKAG-MPNEAYRIRKMALEDRNLGLSSF 496



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 153/336 (45%), Gaps = 44/336 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N   +N+L+     +  + +A  L K+       P+  T + LI GL R G ++   ++
Sbjct: 141 INSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEV 200

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
            ++M +    FG +  P+V  Y +LI+GLCK   V +  +LF E++ +            
Sbjct: 201 FKDMES----FGCL--PDVVTYNTLINGLCKANEVQRGCELFKEIQSRS----------- 243

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                            +P I TYT +++G+C  GK+  A  LF+ M R G  P+V +++
Sbjct: 244 ---------------DCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFN 288

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           VLI+G+ K  N+ EA  + R+M        F+    C+    TFT    IDG C+ G V 
Sbjct: 289 VLIDGFGKIGNIAEAEAMYRKM------AYFD----CSADVVTFTS--LIDGYCRAGQVN 336

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
             ++ +  ++  N    V  +  LI   CK      A +   ++   +++     YN +I
Sbjct: 337 HGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVI 396

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
               K G + + N +L  MEE  C  D  TF  L+I
Sbjct: 397 DGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILII 432



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 24/220 (10%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD--VFSYSVLINGYCKNFNVEEAMNVS- 220
           TY  L+   C +G  ++   +FD M   G +PD  +  + V       +F++ + +    
Sbjct: 75  TYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEV 134

Query: 221 --REMILNGFK------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
             +E+ +N F                    +F E  +    P+T+T NI I GLC+ G V
Sbjct: 135 QGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGV 194

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-NLVADVVAYNI 319
               E+F  +E   C   V  +N+LI G CK    +   ELF ++  + +   D+V Y  
Sbjct: 195 DRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTS 254

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +I    K G++K+ + L   M  +G   +V TFN L+  F
Sbjct: 255 IISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGF 294


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 168/355 (47%), Gaps = 40/355 (11%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
            AL   G  ++    P + VT +SL+ GFC+  +I+DA  +  +M   G + +V     L
Sbjct: 141 SALSYLGKMMKLGIEP-DIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTIL 199

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFM 124
           I  L +    N  +    E++  M D G    PNV  Y SLI GLCK  RL D  + L  
Sbjct: 200 IDTLCK----NRLVVPALEVLKRMKDRG--ISPNVVTYSSLITGLCKSGRLADAERRLH- 252

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           EM  K IN N +          K+ KL + + + ++M+Q  ++P +FTY+ L+ G C+  
Sbjct: 253 EMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHN 312

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK------ 230
           +V+ AI + D M  KG  P+V +YS L NG+ K+  V++ + +  +M   G         
Sbjct: 313 RVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCN 372

Query: 231 -----------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
                            +F  M    ++P   + NI + GL  NG V + +  F  ++ +
Sbjct: 373 TLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKT 432

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
             +L +  +  +I G CK  + + A +LF KL  K +  D  AY I+I  L + G
Sbjct: 433 RNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAG 487



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 138/331 (41%), Gaps = 45/331 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T N L+  FC       A   + KM   G  P++ T  +L+ G   + ++   + +  +M
Sbjct: 125 TCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQM 184

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
              MG      K +V     LID LCK+RLV                           V 
Sbjct: 185 -EKMG-----IKRDVVVDTILIDTLCKNRLV---------------------------VP 211

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  +L+ M  RG++P + TY+ L+ G C  G++  A      M  K   P+V ++S LI+
Sbjct: 212 ALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALID 271

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
            Y K   + +  +V + MI              ++ P  FT +  I GLC +  V E ++
Sbjct: 272 AYAKRGKLSKVDSVYKMMIQ------------MSIDPNVFTYSSLIYGLCMHNRVDEAIK 319

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +   +    C   V  +++L  G  K    +   +L + +  + + A+ V+ N LI    
Sbjct: 320 MLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYF 379

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + G+I     +   M  NG   ++ ++N ++
Sbjct: 380 QAGKIDLALGVFGYMTSNGLIPNIRSYNIVL 410



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 104/199 (52%), Gaps = 12/199 (6%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           ++P ++T   L+N +C   + + A++    M + G  PD+ + S L+NG+C + ++++A+
Sbjct: 119 ISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAV 178

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            V+ +M   G K+        +VV +T    I ID LCKN  V+  +E+   ++      
Sbjct: 179 YVAGQMEKMGIKR--------DVVVDT----ILIDTLCKNRLVVPALEVLKRMKDRGISP 226

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  ++SLI G CK G    A    +++  K +  +V+ ++ LI A  K G++ K + + 
Sbjct: 227 NVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVY 286

Query: 338 LSMEENGCALDVDTFNTLM 356
             M +     +V T+++L+
Sbjct: 287 KMMIQMSIDPNVFTYSSLI 305



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 23/277 (8%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-KGINANTLL----------CKKTKLVEA 146
           P++  +  ++  + K ++ D   +L+  +++ +GI  +  L          C+  +   A
Sbjct: 83  PSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSA 142

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
              L  MM+ G+ P I T + L+NG+CL   +  A+ +   M + G   DV   ++LI+ 
Sbjct: 143 LSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDT 202

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            CKN  V  A+ V + M   G            + P   T +  I GLCK+G + +    
Sbjct: 203 LCKNRLVVPALEVLKRMKDRG------------ISPNVVTYSSLITGLCKSGRLADAERR 250

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              ++       V  F++LI    K G       ++  +   ++  +V  Y+ LI+ L  
Sbjct: 251 LHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCM 310

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             ++ +   +L  M   GC  +V T++TL   F +  
Sbjct: 311 HNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSS 347


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 145/321 (45%), Gaps = 36/321 (11%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDAS-QLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           P    + N LIK  C      DA  ++  +M   GC P+  T  TLI+GL R G ++   
Sbjct: 153 PPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAK 212

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           KL  EMV           P V  Y SLI+GLC  + VD+      EMK KGI  N     
Sbjct: 213 KLFTEMVEK------DCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYS 266

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  + ++A  L E+MM RG  P + TYT L+ G C   K+  A+ L D M  +
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ 326

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PD   Y  +I+G+C      EA N   EMIL G            + P   T NI +
Sbjct: 327 GLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGG------------ITPNRLTWNIHV 374

Query: 252 D-------GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
                   GLC N +      L+ ++      + VE  +SL++  CK G F+ A +L ++
Sbjct: 375 KTSNEVVRGLCTN-YPSRAFTLYLSMRSRGISVEVETLDSLVKCLCKKGEFQKAVQLVDE 433

Query: 305 LSCKNLVADVVAYNILI-HAL 324
           +     + +   + +LI H L
Sbjct: 434 IVTDGCIPNKGTWKLLIGHTL 454



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 153/343 (44%), Gaps = 33/343 (9%)

Query: 29  SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
           S+ +G+       D+ ++  KM  F C P+     T++  L     +NL  K ++     
Sbjct: 91  SICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYK----N 146

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL--------LCK 139
           M + G    P V     LI  LC+ D  VD    +F EM  +G + ++         LC+
Sbjct: 147 MREIG--LPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCR 204

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             ++ EA +L   M+++   P + TYT L+NG C    V+ A+   + M  KG  P+VF+
Sbjct: 205 FGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFT 264

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           YS L++G CK+    +AM +   M+  G +            P   T    I GLCK   
Sbjct: 265 YSSLMDGLCKDGRSLQAMELFEMMMARGCR------------PNMVTYTTLITGLCKEQK 312

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + E +EL   + +   +    ++  +I G C    F  A+   +++    +  + + +NI
Sbjct: 313 IQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGITPNRLTWNI 372

Query: 320 LIHALGKEGQIKKENY------LLLSMEENGCALDVDTFNTLM 356
            +    +  +    NY      L LSM   G +++V+T ++L+
Sbjct: 373 HVKTSNEVVRGLCTNYPSRAFTLYLSMRSRGISVEVETLDSLV 415



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 25/270 (9%)

Query: 92  FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-INANTLLCKKTKLVEANRLL 150
           +G +++P    + SL       R+  + KD   +   K  +    +L ++ +L  A +  
Sbjct: 96  YGRVHRP----FDSL-------RVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFY 144

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCL-VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           + M + GL P + +   L+   C   G V+  + +F  M ++G  PD ++Y  LI+G C+
Sbjct: 145 KNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCR 204

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              ++EA            KK+F EM   +  P   T    I+GLC + +V E M     
Sbjct: 205 FGRIDEA------------KKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEE 252

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           ++    E  V  ++SL+ G CK G    A ELF  +  +    ++V Y  LI  L KE +
Sbjct: 253 MKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQK 312

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           I++   LL  M   G   D   +  ++  F
Sbjct: 313 IQEAVELLDRMNLQGLKPDAGLYGKVISGF 342



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           R+   M     +P    Y  +L       ++N+A   + +M   G  P V S +VLI   
Sbjct: 107 RVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKAL 166

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C+N    +A          G K IF+EM      P+++T    I GLC+ G + E  +LF
Sbjct: 167 CRNDGTVDA----------GLK-IFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLF 215

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +   +C   V  + SLI G C     + A     ++  K +  +V  Y+ L+  L K+
Sbjct: 216 TEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKD 275

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           G+  +   L   M   GC  ++ T+ TL+    +++
Sbjct: 276 GRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQ 311


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 172/390 (44%), Gaps = 86/390 (22%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  ++  LI  +C +G    AS  + +M   G +P++ T   L+ GL   G +++ L + 
Sbjct: 378 NKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIR 437

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
           ++M+       G++ P+   Y  L+ GLCK   +   K L  EM D+ +  +  +     
Sbjct: 438 EKMLER-----GVF-PDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLV 491

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               +   L EA +L EL +++G+NP I  Y  ++ GYC  G +  A+A  + M ++   
Sbjct: 492 DGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLA 551

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGF---------KKI 231
           PD F+YS +I+GY K  +++ A  + REM+              +NGF          KI
Sbjct: 552 PDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKI 611

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC---------------- 275
           F EM+ C +VP   T +I I   CK   +++    F  + ++ C                
Sbjct: 612 FREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSK 671

Query: 276 ------------------ELFVEIF---------------NSLIRGCCKFGIFEIASELF 302
                              +F+  F               NS++   C++G+F  A +L 
Sbjct: 672 NGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLS 731

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           NK++ K  + D V++  L+H +  EG+ K+
Sbjct: 732 NKMTSKGCIPDSVSFVALLHGVCLEGRSKE 761



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 166/345 (48%), Gaps = 26/345 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ ++I GFC +G+ +   +L+ +M + G   NV   +T+I    + G++   +    E 
Sbjct: 276 TYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAV----ET 331

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           + GM + G   KP++  Y +LI G C+D  V +   L  +   KG+  N           
Sbjct: 332 IEGMIECGC--KPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAY 389

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+     A+  L  M +RG  P + TY  L++G  + G+V+VA+ + + M  +G  PD 
Sbjct: 390 CKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDA 449

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             Y++L++G CK F +  A            K +  EM   +V+P+ F     +DG  +N
Sbjct: 450 GIYNILMSGLCKKFKLPAA------------KLLLAEMLDQSVLPDAFVYATLVDGFIRN 497

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G++ E  +LF           +  +N++I+G CKFG+ + A    N++  ++L  D   Y
Sbjct: 498 GNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTY 557

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + +I    K+  +     +   M +  C  +V T+ +L+  F +K
Sbjct: 558 STVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRK 602



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 159/343 (46%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI G C +G + +A QL+++    G  PN  +   LI    + G  +       E
Sbjct: 345 VTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIE 404

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TL 136
           M          +KP++  YG+L+ GL     VD    +  +M ++G+  +        + 
Sbjct: 405 MTERG------HKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSG 458

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCKK KL  A  LL  M+ + + P  F Y  L++G+   G ++ A  LF+    KG  P 
Sbjct: 459 LCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPG 518

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           +  Y+ +I GYCK   +++AM               N MK  ++ P+ FT +  IDG  K
Sbjct: 519 IVGYNAMIKGYCKFGMMKDAM------------ACINRMKKRHLAPDEFTYSTVIDGYVK 566

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              +    ++F  +    C+  V  + SLI G C+ G    + ++F ++    LV +VV 
Sbjct: 567 QHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVT 626

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y+ILI +  KE ++         M  N C  +  TFN L+  F
Sbjct: 627 YSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGF 669



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 141/328 (42%), Gaps = 33/328 (10%)

Query: 44  SQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCY 103
           +Q  + + T      V   D     L R  ++ L LK    +    G + G    N F Y
Sbjct: 42  NQWEENLQTRFSESEVLASDVAHLVLDRIRDVELGLKFFDWV--SRGQYSG--PINGFAY 97

Query: 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGIN----ANTLLCKK---TKLVEANRLLEL---- 152
            SL+  L + R+  + + +   M+ + ++    A +++ +    + LVE  + LEL    
Sbjct: 98  SSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVE--KALELYYFV 155

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV----FSYSVLINGYC 208
           +      P +     LLN    +G++ +A  L+D M       D     +S  +++ G C
Sbjct: 156 LKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGLC 215

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K   +EE     R++I + + +          +P     N  IDG CK G +     LF 
Sbjct: 216 KEGKLEEG----RKLIEDRWGQ--------GCIPNIIFYNTLIDGYCKKGDMEMANGLFI 263

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            L++      VE + ++I G CK G F+    L  +++ + L  +V  YN +I A  K G
Sbjct: 264 ELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHG 323

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
            I K    +  M E GC  D+ T+NTL+
Sbjct: 324 HIVKAVETIEGMIECGCKPDIVTYNTLI 351


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 161/347 (46%), Gaps = 26/347 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N++++  C  G +++A +++ +     C P+V T   LI        +   +KL  E
Sbjct: 209 VTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDE 268

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M           KP+V  Y  LI+G+CK+  +D+       M   G   N +        
Sbjct: 269 MRKKG------CKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRS 322

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C   + ++A RLL  M+++G +P + T+  L+N  C    +  AI + + M + G +P+
Sbjct: 323 MCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPN 382

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY+ L++G+C+   ++ A+     M+  G              P+  T N  +  LCK
Sbjct: 383 SLSYNPLLHGFCQEKKMDRAIEYLEIMVSRG------------CYPDIVTYNTLLTALCK 430

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V   +E+   L    C   +  +N++I G  K G  E A EL  ++  K L  D++ 
Sbjct: 431 DGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIIT 490

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y+ L+  LG+EG++ +   +   ME         T+N +M+   + +
Sbjct: 491 YSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQ 537



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 155/345 (44%), Gaps = 23/345 (6%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           R   +   N  ++     G + +  + +++M   G  P+V  C +LI G  R+G      
Sbjct: 102 RSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKAT 161

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTLL 137
           ++ + + N     G +  P+V  Y  LI G CK   +D+  ++   M +    +  NT+L
Sbjct: 162 RIMEILENS----GAV--PDVITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNTIL 215

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C   KL EA  +L+  +QR   P + TYT L+   C    V  A+ L D M +KG  
Sbjct: 216 RSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCK 275

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV +Y+VLING CK   ++EA+            K  N M      P   T NI +  +
Sbjct: 276 PDVVTYNVLINGICKEGRLDEAI------------KFLNNMPSYGCKPNVITHNIILRSM 323

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G  ++   L   +    C   V  FN LI   C+  +   A ++  K+     V + 
Sbjct: 324 CSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNS 383

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ++YN L+H   +E ++ +    L  M   GC  D+ T+NTL+ + 
Sbjct: 384 LSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL 428



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 162/349 (46%), Gaps = 28/349 (8%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R CY  +  +T+  LI+  C +  +  A +L+ +M   GC+P+V T + LI G+ + G +
Sbjct: 237 RECYPDV--ITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 294

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           +  +K     +N M  +G   KPNV  +  ++  +C        + L  +M  KG + + 
Sbjct: 295 DEAIKF----LNNMPSYG--CKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSV 348

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +        LC+K  L  A  +LE M + G  P   +Y PLL+G+C   K++ AI   + 
Sbjct: 349 VTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEI 408

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +G  PD+ +Y+ L+   CK+  V+ A+            +I N++      P   T 
Sbjct: 409 MVSRGCYPDIVTYNTLLTALCKDGKVDAAV------------EILNQLSSKGCSPVLITY 456

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           N  IDGL K G     +EL   +     +  +  +++L+RG  + G  + A ++F+ +  
Sbjct: 457 NTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEG 516

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    V YN ++  L K  Q  +    L  M E GC     T+  L+
Sbjct: 517 LSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILI 565



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 133/303 (43%), Gaps = 53/303 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N LI G C EG + +A + +  M ++GC+PNV T + ++  +  TG      +L  +
Sbjct: 279 VTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSD 338

Query: 85  MVNG-------------------------------MGDFGGIYKPNVFCYGSLIDGLCKD 113
           M+                                 M   G +  PN   Y  L+ G C++
Sbjct: 339 MLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCV--PNSLSYNPLLHGFCQE 396

Query: 114 RLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTY 165
           + +D+  +    M  +G     +  NTLL   CK  K+  A  +L  +  +G +PV+ TY
Sbjct: 397 KKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITY 456

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             +++G   VGK   A+ L + M RKG  PD+ +YS L+ G  +   V+EA+        
Sbjct: 457 NTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAI-------- 508

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
               KIF++M+  ++ P   T N  + GLCK       ++    +    C+     +  L
Sbjct: 509 ----KIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTIL 564

Query: 286 IRG 288
           I G
Sbjct: 565 IEG 567


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 168/371 (45%), Gaps = 40/371 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMAT--FGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           VT+N+L+  F  EG     + L+K+M T   GC PN  T + +ITGL R G+    L+  
Sbjct: 238 VTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGD----LEEA 293

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------NANT 135
            EMV GM       K + F Y  LI GL     V +  DL +EM+++GI       NA  
Sbjct: 294 AEMVEGMRLSK---KASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMI 350

Query: 136 LLCKKTKLVEANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               ++  VEA ++  + M+  GL P + TY  LLNGYC  G +  A+ LF  +   G  
Sbjct: 351 HGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLA 410

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKKI 231
           P V +Y++LI+GYC+  ++EEA  +  EM+  G                        ++ 
Sbjct: 411 PTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREF 470

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F+EM    + P+ F  N  I      G + +   L   + +         +N LI G CK
Sbjct: 471 FDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCK 530

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A +L  K+    L  D + Y  LIHA  + G +++       M  +G A    T
Sbjct: 531 TGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVT 590

Query: 352 FNTLMISFLQK 362
           +   + ++ ++
Sbjct: 591 YTVFIHAYCRR 601



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 151/348 (43%), Gaps = 26/348 (7%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R  +  +  T+N LI G   +G ++ A  L  +M   G  P V T + +I GL ++G + 
Sbjct: 301 RLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVE 360

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
                  EM   MG      +P+V  Y SL++G CK   + +   LF +++  G+    L
Sbjct: 361 AAQVKFVEM-RAMG-----LQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVL 414

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                    C+   L EA RL E M+++G  P + TYT L+ G      + +A   FD M
Sbjct: 415 TYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEM 474

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             KG  PD F+Y+  I        + +A  +   M+L G            +  +T T N
Sbjct: 475 LSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEG------------ISSDTVTYN 522

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           I IDGLCK G++ +  +L   +  +  +     +  LI   C+ G+   A + F  +   
Sbjct: 523 ILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISD 582

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            L    V Y + IHA  + G +         M E G   +  T+N L+
Sbjct: 583 GLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLI 630



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 153/343 (44%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+NSL+ G+C  G++++A  L   +   G  P V T + LI G  R G++    +L +E
Sbjct: 379 ITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEE 438

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCK 139
           MV    + G +  P+V  Y  L+ G      +   ++ F EM  KG+       NT +  
Sbjct: 439 MV----EQGCL--PDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRA 492

Query: 140 KTKL---VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +  L    +A RL E+MM  G++    TY  L++G C  G +N A  L   M   G  PD
Sbjct: 493 ELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPD 552

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+ +C+   + EA    ++MI +G            + P   T  +FI   C+
Sbjct: 553 CITYTCLIHAHCERGLLREARKFFKDMISDG------------LAPSAVTYTVFIHAYCR 600

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G++      F  +     E     +N LI   C+ G  ++A   F+++  + LV +   
Sbjct: 601 RGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYT 660

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y +LI    KEG  +        M +NG   D  T   L   F
Sbjct: 661 YTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKGF 703



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 144/353 (40%), Gaps = 62/353 (17%)

Query: 48  KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107
            +MA+ G  P+V  C+ ++  L      +    +H EM+       GI +P++  Y +L+
Sbjct: 191 HEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQL-----GI-EPSIVTYNTLL 244

Query: 108 DGLCKDRLVDQTKDLFMEMKDKG-------INAN---TLLCKKTKLVEANRLLE------ 151
           D   K+   D+   L  EM+ +G       +  N   T L +K  L EA  ++E      
Sbjct: 245 DSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSK 304

Query: 152 ----------------------------LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
                                        M   G+ P + TY  +++G    G+V  A  
Sbjct: 305 KASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQV 364

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
            F  M   G  PDV +Y+ L+NGYCK  +++EA+             +F +++   + P 
Sbjct: 365 KFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEAL------------LLFGDLRHAGLAPT 412

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T NI IDG C+ G + E   L   +    C   V  +  L++G        +A E F+
Sbjct: 413 VLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFD 472

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++  K L  D  AYN  I A    G I K   L   M   G + D  T+N L+
Sbjct: 473 EMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILI 525



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 125/286 (43%), Gaps = 42/286 (14%)

Query: 111 CKDRLVDQTKD--------LFMEMKDKGINANTLLCKKT--KLVEANRLLEL------MM 154
           C DR  D T D         F EM   G+  +   C +    L +A R  ++      M+
Sbjct: 172 CTDR--DATPDTCSTLCLSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEML 229

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF--MPDVFSYSVLINGYCKNFN 212
           Q G+ P I TY  LL+ +   G+ +    L   M  +G   +P+  +++V+I G  +  +
Sbjct: 230 QLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGD 289

Query: 213 VEEA------MNVSRE------------MILNGFKKIFNEMKL----CNVVPETFTCNIF 250
           +EEA      M +S++            ++  GF K  ++++L      ++P   T N  
Sbjct: 290 LEEAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAM 349

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           I GL ++G V      F  +     +  V  +NSL+ G CK G  + A  LF  L    L
Sbjct: 350 IHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGL 409

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              V+ YNILI    + G +++   L   M E GC  DV T+  LM
Sbjct: 410 APTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILM 455


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 153/310 (49%), Gaps = 29/310 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           VT+N+L+ GFC    + +A  L + M   G CRPN+ T   LI    ++G +   L L +
Sbjct: 150 VTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLE 209

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           EM     +  G+ K +VF Y SLI   C +  ++  ++LF EM  + ++ N +       
Sbjct: 210 EM-----EREGL-KADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQ 263

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            L +  +  EA+ +L+ M  RG+ P +  YT L +G C  G+   AI + D M +KG  P
Sbjct: 264 GLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEP 323

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
              +Y+V++NG CK   +++A  V   M+  G K            P+  T N  + GLC
Sbjct: 324 GTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKK------------PDAVTYNTLLKGLC 371

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             G + E M+L+  L      +  ++F  N+LI+G CK G    A+ + + +    L  +
Sbjct: 372 GAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGN 431

Query: 314 VVAYNILIHA 323
           +V YN LI  
Sbjct: 432 IVTYNFLIEG 441



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 168/367 (45%), Gaps = 41/367 (11%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           ++SLI  FC EG+I    +L  +M      PNV T   L+ GL RTG      +   EM+
Sbjct: 223 YSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRW----REASEML 278

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL--------L 137
             M   G   +P+V  Y  L DGLCK+ R  D  K L + M  KG    TL        L
Sbjct: 279 KDMTARG--VRPDVVAYTVLADGLCKNGRAGDAIKVLDL-MVQKGEEPGTLTYNVVVNGL 335

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM--P 195
           CK+ ++ +A  ++E+M+++G  P   TY  LL G C  GK++ A+ L+  +  + F   P
Sbjct: 336 CKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKP 395

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------KKIFNEMKLC 238
           DVF+ + LI G CK   V +A  +   M+  G                  +K+   +KL 
Sbjct: 396 DVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLW 455

Query: 239 NVV------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                    P + T ++ I+GLCK   +     LF  ++ S     V  +N+L+   C+ 
Sbjct: 456 KYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCRE 515

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              E A  LF ++   N   DVV++NI+I    K G +K    LL  M       D  TF
Sbjct: 516 DSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTF 575

Query: 353 NTLMISF 359
           + L+  F
Sbjct: 576 SILINRF 582



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 169/385 (43%), Gaps = 60/385 (15%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N VT++ LI  +C  G + +   L+++M   G + +V    +LI+     G++    
Sbjct: 182 RP-NLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGR 240

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +L  EM+           PNV  Y  L+ GL +     +  ++  +M  +G+  + +   
Sbjct: 241 ELFDEMLRRK------VSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYT 294

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +  +A ++L+LM+Q+G  P   TY  ++NG C   +++ A  + + M +K
Sbjct: 295 VLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKK 354

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PD  +Y+ L+ G C    + EAM++ + ++   F          +V P+ FTCN  I
Sbjct: 355 GKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKF----------HVKPDVFTCNNLI 404

Query: 252 DGLCKNGHVLEVMELFPTL-------EISNCELFVE------------------------ 280
            GLCK G V +   +  ++        I      +E                        
Sbjct: 405 QGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFS 464

Query: 281 ----IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
                ++ +I G CK  +  +A  LF K+    +   V+ YN L+ +L +E  +++   L
Sbjct: 465 PNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSL 524

Query: 337 LLSMEENGCALDVDTFNTLMISFLQ 361
              M      +DV +FN ++   L+
Sbjct: 525 FQEMRNVNHNVDVVSFNIIIDGTLK 549



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 158/340 (46%), Gaps = 24/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N ++ G C E  + DA  +V+ M   G +P+  T +TL+ GL   G ++  + L + 
Sbjct: 326 LTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKL 385

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +++         KP+VF   +LI GLCK+  V     +   M + G+  N +        
Sbjct: 386 LLSEKFHV----KPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEG 441

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
                KL+EA +L +  ++ G +P   TY+ ++NG C +  ++VA  LF  M   G  P 
Sbjct: 442 YLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPT 501

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V  Y+ L+   C+  ++E+A            + +F EM+  N   +  + NI IDG  K
Sbjct: 502 VIDYNALMTSLCREDSLEQA------------RSLFQEMRNVNHNVDVVSFNIIIDGTLK 549

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V    EL   + + +       F+ LI    K G+ + A  L+ K+     V  VV 
Sbjct: 550 AGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVV 609

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++ L+   G +G+ +K   LL  M +    LD    +T++
Sbjct: 610 FDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTIL 649



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 105/213 (49%), Gaps = 15/213 (7%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG--FMPDVFSYSVL 203
           A  +L LM +RG    ++    +L G+C  G+ + A++LF  M R     +PD  +Y+ L
Sbjct: 96  AFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTL 155

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC-NVVPETFTCNIFIDGLCKNGHVLE 262
           +NG+CK   + EA            + +F  MK   +  P   T ++ ID  CK+G V E
Sbjct: 156 VNGFCKAKRLAEA------------RVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGE 203

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            + L   +E    +  V +++SLI   C  G  E   ELF+++  + +  +VV Y+ L+ 
Sbjct: 204 GLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQ 263

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
            LG+ G+ ++ + +L  M   G   DV  +  L
Sbjct: 264 GLGRTGRWREASEMLKDMTARGVRPDVVAYTVL 296



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 131/340 (38%), Gaps = 87/340 (25%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM------------GDFGGIYKP------ 98
           P+   C TLI  LR+    +  + ++ +MV+ +              F   + P      
Sbjct: 40  PSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSV 99

Query: 99  -----------NVFCYGSLIDGLCKDRLVDQTKDLFMEMK-------DKGINANTLL--- 137
                      NV+    ++ G C+    D+   LF +MK          +  NTL+   
Sbjct: 100 LSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGF 159

Query: 138 CKKTKLVEANRLLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           CK  +L EA  L E M + G   P + TY+ L++ YC  G+V   + L + M R+G   D
Sbjct: 160 CKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKAD 219

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           VF YS LI+ +C   ++E              +++F+EM    V P   T +  + GL +
Sbjct: 220 VFVYSSLISAFCGEGDIETG------------RELFDEMLRRKVSPNVVTYSCLMQGLGR 267

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G   E                                   ASE+   ++ + +  DVVA
Sbjct: 268 TGRWRE-----------------------------------ASEMLKDMTARGVRPDVVA 292

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y +L   L K G+      +L  M + G      T+N ++
Sbjct: 293 YTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVV 332


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 162/368 (44%), Gaps = 37/368 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ +LI  +C  G++  A + +  +   G  P+     + + G  RTG      +L   M
Sbjct: 76  TYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLM 135

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                  G    P  F Y +L+ GLC   +V +   +F  M   G   ++         L
Sbjct: 136 PQR----GCARTP--FTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGL 189

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +  EA  LL   M +G  P +  Y  L++GYC  G + +AI +F  M  KG +P+V
Sbjct: 190 CGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNV 249

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNE 234
            +Y+ LI G+CK+  VE AM +   MI  G                         ++ + 
Sbjct: 250 RTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHS 309

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+ C + P  +TC + ID LCK+G + E  +   +L     ++   I+ S+I   CK G 
Sbjct: 310 MEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGK 369

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           F+ A  L  K+  +  V D   Y+ LI  L +E ++ +   LL  M E+G   +   F  
Sbjct: 370 FDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTI 429

Query: 355 LMISFLQK 362
           L+   L++
Sbjct: 430 LIDKHLRE 437



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 163/375 (43%), Gaps = 39/375 (10%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R C R     T+ +L++G C  G +R+A  +   M   GC P+      ++ GL   G  
Sbjct: 138 RGCAR--TPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRA 195

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
              + L   + + MG     + PNV  Y +LIDG C    ++   D+F  M+ KG   N 
Sbjct: 196 GEAVAL---LTDAMGKG---FVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNV 249

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                     CK  K+  A  L   M++ GL P + TYT L+ G C  G +  A  L  S
Sbjct: 250 RTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHS 309

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM--KLCNV-- 240
           M   G  P+ ++  VLI+  CK+  +EEA      ++  G K    I+  M   LC    
Sbjct: 310 MEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGK 369

Query: 241 ----------------VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                           VP+    +  IDGLC+   +LE + L   +  S  +     F  
Sbjct: 370 FDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTI 429

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI    +    +    + ++++   +  DVV Y + I +  ++G+++    +++ M ++G
Sbjct: 430 LIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHG 489

Query: 345 CALDVDTFNTLMISF 359
              ++ T+NTL+  +
Sbjct: 490 VRPNLTTYNTLIKGY 504



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   +N+LI G+C  G++  A  + K M + GC PNV T   LI G  ++G +   + L+
Sbjct: 213 NVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLY 272

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             M+       G+  PNV  Y +LI G C +  ++    L   M+  G+  N        
Sbjct: 273 SRMIEA-----GL-APNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLI 326

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ EA + L  ++Q+G+      YT +++  C  GK + A  L   +  +GF+
Sbjct: 327 DALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFV 386

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD   YS LI+G C+   + EA+++  +MI +G +         N VP T    I ID  
Sbjct: 387 PDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQA--------NAVPFT----ILIDKH 434

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            +         +   +  +  +  V  +   IR  C+ G  E A  +  ++    +  ++
Sbjct: 435 LREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNL 494

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             YN LI      G + +    L +M +NGC  + +++  L+   L+K
Sbjct: 495 TTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKK 542



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 143/324 (44%), Gaps = 39/324 (12%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + KV  A++ +   I     P N VT+ +LI+G C EG++  A +L+  M   G  PN  
Sbjct: 262 SGKVERAMVLYSRMIEAGLAP-NVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEW 320

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           TC  LI  L + G +    +    +V       GI K N   Y S+ID LCK    D   
Sbjct: 321 TCLVLIDALCKHGRIEEAQQFLGSLVQK-----GI-KVNQVIYTSMIDALCKSGKFDGAH 374

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L  ++  +G   +          LC++ KL+EA  LL  M++ G+      +T L++ +
Sbjct: 375 NLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKH 434

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
               + +    + D MA  G  PDV +Y+V I  YC++  +E+A ++  +MI +G +   
Sbjct: 435 LREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVR--- 491

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                    P   T N  I G    G V +       +  + C+   E +  L+      
Sbjct: 492 ---------PNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLL------ 536

Query: 293 GIFEIASELFNKLSCKNLVADVVA 316
           G+      L  K S  +LVAD ++
Sbjct: 537 GL------LLKKNSYHDLVADSIS 554



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 23/218 (10%)

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV-- 219
           + TYT L+N YC  G +  A     S+ R G  PD  +Y+  + GYC+      A  +  
Sbjct: 74  LHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFL 133

Query: 220 ------------SREMILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
                       +   +L G            +F  M      P++   +I + GLC  G
Sbjct: 134 LMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAG 193

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              E + L            V ++N+LI G C  G  E+A ++F  +  K  + +V  Y 
Sbjct: 194 RAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYT 253

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            LI    K G++++   L   M E G A +V T+ TL+
Sbjct: 254 QLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLI 291



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 122/280 (43%), Gaps = 32/280 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+   I+ +C +G + DA  ++ +M   G RPN+TT +TLI G    G ++      + 
Sbjct: 460 VTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKN 519

Query: 85  MV-NGMGD--------FGGIYKPNVFCYGSLIDGLCKDRLVDQT--KDLFME-MKDKGIN 132
           M+ NG            G + K N + +  + D +   ++VD    ++L  E +K +  +
Sbjct: 520 MIDNGCKPNDESYTVLLGLLLKKNSY-HDLVADSISLWKIVDMKVLEELLEEVIKLQCSS 578

Query: 133 ANTL-------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           A+ +       L K  +L EA   L  M    L P    YT ++     +  +  A+   
Sbjct: 579 ASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFL 638

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           DSM ++ ++P + SY  +I   C+    E + + ++ +  +   K +N         +  
Sbjct: 639 DSMVKRNYLPRLESYRFIICALCE----EGSFHTAKSIFGDILSKEYNR--------DEI 686

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
              I IDGL + G+  +   L   +E  NC     I++ L
Sbjct: 687 AWKILIDGLLQKGNTADCSRLLSFMEEQNCRPGSAIYSRL 726


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 160/346 (46%), Gaps = 29/346 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+  L++  C      +A  ++ +M   GC PN+ T + +I G+ R G ++      +E
Sbjct: 188 VTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA----KE 243

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++N +  +G  ++P++  Y +++ GLC  R  D  K LF EM DK    N +        
Sbjct: 244 ILNRLSSYG--FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRF 301

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+   +  A ++L+ M Q G  P       ++N  C  G+V+ A    ++M   G  PD
Sbjct: 302 FCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPD 361

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY+ ++ G C+    E A            K++  EM   N  P   T N FI  LC+
Sbjct: 362 TISYTTVLRGLCRAGRWEHA------------KELLPEMVRKNCPPNEVTFNTFICILCQ 409

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + + ++L   +    C + +  +N+L+ G C  G  + A ELFN L C+    + + 
Sbjct: 410 KGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTIT 466

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           Y  L+  L    ++     LL  M +  C L+  TFN L+  F QK
Sbjct: 467 YTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQK 512



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 176/348 (50%), Gaps = 29/348 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTF+ L++ FC  G +  A Q++++M+  GC PN T C+ +I  + + G ++      
Sbjct: 291 NEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAY--- 347

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------- 135
            + +N MG +G    P+   Y +++ GLC+    +  K+L  EM  K    N        
Sbjct: 348 -DFLNNMGMYG--CNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFI 404

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            +LC+K  + +A +L+ELM + G +  I TY  L++G+C+ G+V+ A+ LF+++  +   
Sbjct: 405 CILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE--- 461

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+ L+ G C    ++ A  +  EMI           K C +   TF  N+ +   
Sbjct: 462 PNTITYTTLLTGLCHAERLDAAAELLAEMI----------QKDCPLNAVTF--NVLVSFF 509

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G V E MEL   +    C   +  FN+L+ G  K    E A EL + L  K +  D 
Sbjct: 510 CQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDT 569

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + Y+ ++  L +E + ++   +L ++++ G    V  +N ++ +  ++
Sbjct: 570 ITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKR 617



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 160/342 (46%), Gaps = 29/342 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I G C EG + DA +++ +++++G +P++ +  T++ GL      +    L 
Sbjct: 221 NIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLF 280

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EMV+          PN   +  L+   C+  +V++   +  +M   G   NT L     
Sbjct: 281 AEMVDKK------CVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVI 334

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+ ++ +A   L  M   G NP   +YT +L G C  G+   A  L   M RK   
Sbjct: 335 NAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCP 394

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +++  I   C+   +E+A+ +   M   G          C+V   T+  N  + G 
Sbjct: 395 PNEVTFNTFICILCQKGLIEQAIKLIELMPEYG----------CSVGIVTY--NALVHGF 442

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G V   +ELF  L    CE     + +L+ G C     + A+EL  ++  K+   + 
Sbjct: 443 CVQGRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNA 499

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V +N+L+    ++G +++   L+  M E+GC  ++ TFNTL+
Sbjct: 500 VTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLL 541



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 131/271 (48%), Gaps = 20/271 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           +P+V  Y  L++ +CK     +  ++  EM+ KG   N +        +C++ ++ +A  
Sbjct: 184 QPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKE 243

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L  +   G  P I +YT +L G C   + +    LF  M  K  +P+  ++ +L+  +C
Sbjct: 244 ILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFC 303

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           +   VE A+ V ++M  +G              P T  CNI I+ +CK G V +  +   
Sbjct: 304 RGGMVERAIQVLQQMSQHG------------CTPNTTLCNIVINAICKQGRVDDAYDFLN 351

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            + +  C      + +++RG C+ G +E A EL  ++  KN   + V +N  I  L ++G
Sbjct: 352 NMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKG 411

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            I++   L+  M E GC++ + T+N L+  F
Sbjct: 412 LIEQAIKLIELMPEYGCSVGIVTYNALVHGF 442



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 129/300 (43%), Gaps = 29/300 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N+VTFN+ I   C +G I  A +L++ M  +GC   + T + L+ G    G ++  L+
Sbjct: 394 PPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALE 453

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANT--- 135
           L   +           +PN   Y +L+ GLC    +D   +L  EM  KD  +NA T   
Sbjct: 454 LFNNLP---------CEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNV 504

Query: 136 ---LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                C+K  + EA  L+  MM+ G  P + T+  LL+G         A+ L   +  KG
Sbjct: 505 LVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKG 564

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              D  +YS +++   +    EEA+ +   +   G +            P+    N  + 
Sbjct: 565 VSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMR------------PKVGMYNKILF 612

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK     + ++ F  +  + C      +  LI G    G+ + A  + ++L  K +++
Sbjct: 613 ALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVLS 672



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
           +M ++G  P V +Y+VL+   CK+    EAMNV             +EM+     P   T
Sbjct: 177 TMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNV------------LDEMRAKGCTPNIVT 224

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N+ I+G+C+ G V +  E+   L     +  +  + ++++G C    ++    LF ++ 
Sbjct: 225 YNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV 284

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
            K  V + V +++L+    + G +++   +L  M ++GC
Sbjct: 285 DKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGC 323



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 64/181 (35%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PLN VTFN L+  FC +G + +A +LV +M   GC PN+ T +TL+ G+ +  N    L+
Sbjct: 496 PLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALE 555

Query: 81  LHQ-------------------------------EMVNGMGDFG-----GIYK------- 97
           L                                 +M++ + D G     G+Y        
Sbjct: 556 LLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALC 615

Query: 98  ---------------------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
                                PN   Y  LI+GL  + L+ + + +  E+  KG+ + +L
Sbjct: 616 KRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVLSKSL 675

Query: 137 L 137
           L
Sbjct: 676 L 676


>gi|449468277|ref|XP_004151848.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g14770, mitochondrial-like, partial [Cucumis
           sativus]
          Length = 697

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 183/401 (45%), Gaps = 75/401 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+++LI G C  G+I  A   + +M    C PNV T  +LI G  + G ++   K+ 
Sbjct: 128 NYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVL 187

Query: 83  QEMV--NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-- 138
           ++MV  N M        PN+  Y  L+DG  K    D   DL+ +MK  G+  N  +   
Sbjct: 188 RKMVHKNAM--------PNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDA 239

Query: 139 ------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 +  ++ EA  L+  M   GL P +  YT L++G+   GKV+ A+ L   M  K 
Sbjct: 240 FVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKN 299

Query: 193 FMPDVFSYSVLINGYCK--NFNVEEAMNVSREM-----------ILNG-FKK-------- 230
            + D+ +++VLIN   K    + E   +  REM           +LNG FKK        
Sbjct: 300 VVFDIVTFNVLINCLFKLGKSDTESIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALE 359

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHV---------LEVMELFPT-------LEISN 274
           ++NEMK   ++P   TCNI I+GLC+ G +         + +M L+PT       L IS+
Sbjct: 360 LWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISS 419

Query: 275 -----------CELFV--------EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
                       EL V        +++N LI   CK G+   A+ +   +  + ++AD  
Sbjct: 420 KSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTT 479

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            YN LIH       +K+      +M     + D++T+N L+
Sbjct: 480 TYNALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLL 520



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 172/393 (43%), Gaps = 59/393 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T++SLI G+  +G + DA ++++KM      PN+ T   L+ G  + G  ++ L L+
Sbjct: 163 NVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLY 222

Query: 83  QEM---------------VNGMGDFG--------------GIYKPNVFCYGSLIDGLCKD 113
            +M               VN M   G              G  KP++  Y +L+DG  K 
Sbjct: 223 SKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKS 282

Query: 114 RLVDQTKDLFMEMKDKGI-----NANTLLCKKTKLVEAN--RLLELMMQRGLNPVIFTYT 166
             V    +L  EM  K +       N L+    KL +++   +   M + GL+P + TY 
Sbjct: 283 GKVSSALNLAQEMTSKNVVFDIVTFNVLINCLFKLGKSDTESIYSAMREMGLSPDLATYN 342

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            +LNG    G    A+ L++ M  +  +P+  + +++ING C+   +E A+++ +EM+L 
Sbjct: 343 TMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLM 402

Query: 227 GFKK----------IFNEMKLCNVVPETFTC-------------NIFIDGLCKNGHVLEV 263
           G             I ++ +  + + +T                NI I  LCK G   + 
Sbjct: 403 GLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKA 462

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             +   +E          +N+LI G C     + A   ++ +  + +  D+  YN+L+  
Sbjct: 463 TAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGG 522

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L K G I + + LL  +++ G   +  T+ TLM
Sbjct: 523 LSKAGLIHEADDLLSEIKKRGLVPNACTYETLM 555



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 156/345 (45%), Gaps = 73/345 (21%)

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
            L L++EMV G G F     P+V  +GS++ GLCK   + + K L  EM   G+N N + 
Sbjct: 8   ALTLYEEMV-GSGIF-----PDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVS 61

Query: 137 -------LCKKTKLVEANRLLELMMQRGLN------------------------------ 159
                  L K  K+ EA   L  M+ RG N                              
Sbjct: 62  YTILLDALFKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLY 121

Query: 160 -----PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
                P   TY+ L++G C +G +N A +    M  K  +P+V +YS LINGY K   + 
Sbjct: 122 QLNLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLH 181

Query: 215 EAMNVSREMI--------------LNG-FKK--------IFNEMKLCNVVPETFTCNIFI 251
           +A  V R+M+              L+G FK         ++++MK   +    F  + F+
Sbjct: 182 DAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFV 241

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           + + ++G + E  EL   +     +  +  + +L+ G  K G    A  L  +++ KN+V
Sbjct: 242 NNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNVV 301

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            D+V +N+LI+ L K G+   E+ +  +M E G + D+ T+NT++
Sbjct: 302 FDIVTFNVLINCLFKLGKSDTES-IYSAMREMGLSPDLATYNTML 345



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 138/306 (45%), Gaps = 28/306 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            T+N+++ G   +GN   A +L  +M +    PN  TC+ +I GL   G M   + + +E
Sbjct: 339 ATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKE 398

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD---QTKDLFMEMK---DKGINANTL-- 136
           MV       G+Y P    Y  L++   K R  D   QT +L + M+   DK +  N L  
Sbjct: 399 MV-----LMGLY-PTSTTYRILLNISSKSRRADTILQTHELLVNMQLKVDKDV-YNILIS 451

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LCK     +A  +L+ M +RG+     TY  L++GYC+   +  A   + +M  +   P
Sbjct: 452 NLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVSP 511

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D+ +Y++L+ G  K   + EA              + +E+K   +VP   T    + G C
Sbjct: 512 DIETYNLLLGGLSKAGLIHEA------------DDLLSEIKKRGLVPNACTYETLMCGHC 559

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K  +  E + ++  + I         +N LI    K G  + A EL N++  K +     
Sbjct: 560 KVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQAKELMNEMQTKGVSPTCT 619

Query: 316 AYNILI 321
            Y+ILI
Sbjct: 620 TYDILI 625



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 127/282 (45%), Gaps = 40/282 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T N +I G C  G + +A  ++K+M   G  P  TT   L+    ++   +  L+ H
Sbjct: 372 NAITCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTH 431

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + +VN         K +   Y  LI  LCK  +  +   +  +M+++GI A+T       
Sbjct: 432 ELLVNMQ------LKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNALI 485

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C  + L  A      M+   ++P I TY  LL G    G ++ A  L   + ++G +
Sbjct: 486 HGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLV 545

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
           P+  +Y  L+ G+CK  N +E + +  EM++ GF                       K++
Sbjct: 546 PNACTYETLMCGHCKVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQAKEL 605

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
            NEM+   V P   T +I I G C   ++L++ +L  TL+IS
Sbjct: 606 MNEMQTKGVSPTCTTYDILICGWC---NLLKMPDLGSTLKIS 644



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 12/182 (6%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A+ L++ M   G  PDV ++  ++ G CK+  + E   + REM   G       M L NV
Sbjct: 8   ALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMG-------MNLNNV 60

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
              ++T  I +D L K G V E +     + +      V     LI G  K G  + A  
Sbjct: 61  ---SYT--ILLDALFKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEY 115

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           LF  L   NLV + + Y+ LI    K G I      L  MEE  C  +V T+++L+  ++
Sbjct: 116 LFCNLYQLNLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYV 175

Query: 361 QK 362
           ++
Sbjct: 176 KQ 177


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 172/374 (45%), Gaps = 39/374 (10%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N  TFN++IK  C +G +++A  ++  +  +G  P+  T  +LI G  + GN++L  
Sbjct: 199 RP-NLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAF 257

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI----NANT 135
           ++   MV    D      PN   Y +LI+GLC +  +++  D+  EM DKGI    +A T
Sbjct: 258 EMFDRMVKDGCD------PNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYT 311

Query: 136 L----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           +    LC   +  EA +LL  M +RG  P + TYT L++G    GK  VAI ++  M   
Sbjct: 312 IPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLAD 371

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF--------- 228
           G +P   +YS LIN        E A+ +   M              I+ GF         
Sbjct: 372 GLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKA 431

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
             IF++M      P   T NI I    K G++   M L   ++ +  +L    + +LI G
Sbjct: 432 TAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISG 491

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             + G  E A  LFN++    +  +VV YN +I+      ++     L   M E+G    
Sbjct: 492 FSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPS 551

Query: 349 VDTFNTLMISFLQK 362
             T+N +MIS   K
Sbjct: 552 SGTYN-MMISGFSK 564



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 156/335 (46%), Gaps = 49/335 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N +IKGFC  G I+ A+ +  +M   G  PNV T + +I    + G MN  ++L 
Sbjct: 411 NTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRL- 469

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            EM+ G G      K + + Y +LI G  +   ++    LF EM                
Sbjct: 470 LEMMKGNG-----LKLDTWTYANLISGFSRGGKLEHAFSLFNEM---------------- 508

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                      ++ G++P + TY  ++NGY  V KV+ A+ALF  M   G +P   +Y++
Sbjct: 509 -----------VEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNM 557

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           +I+G+ K   + EA N   +M+  G            ++P   T   FIDGLCKNG    
Sbjct: 558 MISGFSKTNRISEAENFCGKMVKQG------------LLPNVITYTSFIDGLCKNGRTSL 605

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             ++F  ++  +    +  ++SLI G C+ G  E A  L +   C+    +V  Y  L+ 
Sbjct: 606 AFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD-GCE---PNVDTYTTLVR 661

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
            L  +G+  + + L+ SM++ G     + +  L++
Sbjct: 662 GLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLV 696



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 158/335 (47%), Gaps = 31/335 (9%)

Query: 34  FCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG-MGDF 92
           F M+G  RD   +  +M   G RPN+ T + +I  L   G +        E++ G +  +
Sbjct: 180 FDMDGLGRD---VYIEMLNSGIRPNLFTFNAMIKILCNKGKVQ-----EAELIMGHIFHY 231

Query: 93  GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLV 144
           G    P+ F Y SLI G CK+  +D   ++F  M   G + N++        LC + +L 
Sbjct: 232 GAC--PDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLE 289

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           EA  +LE M+ +G+ P +  YT  +   C  G+   A+ L   M ++G  P+V +Y+ LI
Sbjct: 290 EAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALI 349

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           +G  ++   E A+ V  +M+ +G            +VP   T +  I+ L   G     +
Sbjct: 350 SGLSRDGKFEVAIGVYHKMLADG------------LVPTAVTYSALINQLYVEGRFETAL 397

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            +F  +   +     E +N +I+G C  G  + A+ +F+++       +V+ YNI+IH  
Sbjct: 398 TIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIY 457

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            K+G +     LL  M+ NG  LD  T+  L+  F
Sbjct: 458 FKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGF 492



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 30/311 (9%)

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           +I   R  G +   +++  E +N   DFG      ++ + +L+  L K  +    +D+++
Sbjct: 137 MIKSCRNEGEVKRVIQVLSE-INTTYDFGY----TLYSFSTLLIQLGKFDMDGLGRDVYI 191

Query: 125 EMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           EM + GI  N         +LC K K+ EA  ++  +   G  P  FTYT L+ G+C  G
Sbjct: 192 EMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNG 251

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
            +++A  +FD M + G  P+  +YS LING C    +EEAM++  EMI  G +       
Sbjct: 252 NLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIE------- 304

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
                P      I I  LC  G   E ++L   ++   C   V+ + +LI G  + G FE
Sbjct: 305 -----PTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFE 359

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +A  +++K+    LV   V Y+ LI+ L  EG+ +    +   M  +    + +T+N ++
Sbjct: 360 VAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVII 419

Query: 357 -----ISFLQK 362
                I ++QK
Sbjct: 420 KGFCSIGYIQK 430



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 148/354 (41%), Gaps = 46/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A   F   +     P N VT+N++I G+     + DA  L  KM   G  P+  T 
Sbjct: 497 KLEHAFSLFNEMVEHGISP-NVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTY 555

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + +I+G  +T  ++       +MV       G+  PNV  Y S IDGLCK+        +
Sbjct: 556 NMMISGFSKTNRISEAENFCGKMVKQ-----GLL-PNVITYTSFIDGLCKNGRTSLAFKI 609

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EMK +    N          LC++ +  +A RLL+     G  P + TYT L+ G C 
Sbjct: 610 FHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLD----DGCEPNVDTYTTLVRGLCG 665

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G+   A  L +SM +KG  P    Y  L+ G CKN  VE A+ +   M+  GF+   ++
Sbjct: 666 KGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSD 725

Query: 235 MK--LCNVVPETF---------------------TCNIFIDGLCKNGHVLEVMELFPTLE 271
            K  +C +    F                        + +DGL K G     +EL   +E
Sbjct: 726 YKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVME 785

Query: 272 ISNCELFVEIFNSLIRGC----CKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
             NC L  +    L R      C   I +I+ +L      +   ADV+  +I +
Sbjct: 786 SRNCTLNFQTRVMLARELSALGCSIEIPQISKQLGIVKEKQKQTADVLRDDIAL 839


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 166/345 (48%), Gaps = 26/345 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +FN LI GFC  G +++A +  K+M      P+V +   LI    R G M+      +EM
Sbjct: 264 SFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREM 323

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
             G+G       P+   Y  +I G C+   + +   +  EM   G     +  NTLL   
Sbjct: 324 -KGLG-----LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGL 377

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ +L++A +LL  M +RG+ P + T+T L++GYC  G    A+ LFD++ R+   PDV
Sbjct: 378 CKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDV 437

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LI+G C+  ++ +A             +++++M    ++P   T +I ID  C+ 
Sbjct: 438 VTYNSLIDGMCRKGDLAKA------------NELWDDMHAREILPNHITYSILIDSHCEK 485

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V +       +        +  +NS+I+G C+ G  +   +   K+   N+  D++ +
Sbjct: 486 GQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITF 545

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N LIH   KE  +     +   ME+     D  T+N ++  F ++
Sbjct: 546 NTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQ 590



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 174/369 (47%), Gaps = 37/369 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N  T N ++  +C       A  ++ +M      P+V T + LI    R G+++  + L
Sbjct: 155 VNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
               V+ M + G   KP +  Y S++ GLCK R  D+ K++F  M    +  +       
Sbjct: 215 ----VDSMANRG--LKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNIL 268

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+  ++ EA +  + M  R + P + +++ L+  +   G+++ A A    M   G 
Sbjct: 269 IGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGL 328

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGF---------KK 230
           +PD   Y+++I G+C+  ++ EA+ V  EM+              LNG          +K
Sbjct: 329 VPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEK 388

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           + NEM+   V P+  T    I G C+ G+    ++LF TL        V  +NSLI G C
Sbjct: 389 LLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMC 448

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           + G    A+EL++ +  + ++ + + Y+ILI +  ++GQ++     L  M + G   ++ 
Sbjct: 449 RKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIR 508

Query: 351 TFNTLMISF 359
           T+N+++  +
Sbjct: 509 TYNSIIKGY 517



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 141/297 (47%), Gaps = 26/297 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+ G C +  + DA +L+ +M   G  P++ T  TLI G  R GN    L+L   
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDT 427

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           ++          +P+V  Y SLIDG+C+   + +  +L+ +M  + I  N +        
Sbjct: 428 LLRQR------LRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDS 481

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+K ++ +A   L+ M+++G  P I TY  ++ GYC  G V         M +    PD
Sbjct: 482 HCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPD 541

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +++ LI+GY K  N+  A NV            FN M+   V P+  T N+ I+G  +
Sbjct: 542 LITFNTLIHGYIKEENMHGAFNV------------FNIMEKEMVRPDAVTYNMIINGFSE 589

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            G++ +   +F  +  S  E     + SLI G    G  + A +L +++  +    D
Sbjct: 590 QGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 153/334 (45%), Gaps = 26/334 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V +  +I GFC  G++ +A ++  +M  FGC P+V T +TL+ GL +   +    KL 
Sbjct: 331 DGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLL 390

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF-----MEMKDKGINANTL- 136
            EM     +  G+  P++  + +LI G C+    +    LF       ++   +  N+L 
Sbjct: 391 NEM-----EERGV-TPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLI 444

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             +C+K  L +AN L + M  R + P   TY+ L++ +C  G+V  A    D M +KG +
Sbjct: 445 DGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNL 504

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P++ +Y+ +I GYC++ NV++             ++   +M+  NV P+  T N  I G 
Sbjct: 505 PNIRTYNSIIKGYCRSGNVKKG------------QQFLQKMRQDNVFPDLITFNTLIHGY 552

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K  ++     +F  +E          +N +I G  + G  + A  +F  +    +  D 
Sbjct: 553 IKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDR 612

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             Y  LI+     G  K+   L   M   G A D
Sbjct: 613 YTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 18/235 (7%)

Query: 128 DKGINANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           D  +NA TL       CK  +   A+ ++  M +R + P + T+  L++     G V+ A
Sbjct: 152 DSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAA 211

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           IAL DSMA +G  P + +Y+ ++ G CK+   ++A            K++F  M  C+V 
Sbjct: 212 IALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKA------------KEVFRTMDQCSVA 259

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+  + NI I G C+ G V E ++ +  ++       V  F+ LI    + G  + A   
Sbjct: 260 PDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAY 319

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             ++    LV D V Y ++I    + G + +   +   M   GC  DV T+NTL+
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLL 374



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 15/230 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F + +R+  RP + VT+NSLI G C +G++  A++L   M      PN  T   LI
Sbjct: 421 ALQLFDTLLRQRLRP-DVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILI 479

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
                 G +        EMV   G+      PN+  Y S+I G C+   V + +    +M
Sbjct: 480 DSHCEKGQVEDAFGFLDEMVK-KGNL-----PNIRTYNSIIKGYCRSGNVKKGQQFLQKM 533

Query: 127 KDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           +        I  NTL+    K+  +  A  +  +M +  + P   TY  ++NG+   G +
Sbjct: 534 RQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNM 593

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
             A  +F  M   G  PD ++Y  LING+    N ++A  +  EMI  GF
Sbjct: 594 QDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGF 643



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           + ++ +++++ YCK                +G   + +EM+   V P+  T N+ ID   
Sbjct: 156 NAYTLNIMVHSYCKTLE------------FDGADTVISEMEKRCVFPDVVTHNVLIDARF 203

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           + G V   + L  ++     +  +  +NS+++G CK   F+ A E+F  +   ++  DV 
Sbjct: 204 RAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVR 263

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           ++NILI    + G++K+       M+      DV +F+ L+  F ++
Sbjct: 264 SFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRR 310



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GA   F    +   RP + VT+N +I GF  +GN++DA ++ K M   G  P+  T  +L
Sbjct: 560 GAFNVFNIMEKEMVRP-DAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSL 618

Query: 66  ITGLRRTGNMNLTLKLHQEMVN 87
           I G    GN     +LH EM++
Sbjct: 619 INGHVTAGNSKQAFQLHDEMIH 640


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 170/338 (50%), Gaps = 30/338 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN LI G C +G++  A++LV  M   GC PN  T +TLI GL   G +   + L   
Sbjct: 270 VTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDR 329

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL------- 136
           MV+          PNV  YG++I+GL K  R +D    L + M+++G   N         
Sbjct: 330 MVSSK------CVPNVVTYGTIINGLVKQGRALDGACVLAL-MEERGYCVNEYVYSTLIS 382

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            L K+ K  EA  L + M  +G       Y+ +++G C  GK + A+ +   M  KG  P
Sbjct: 383 GLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTP 442

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           + ++ S L+ G+ +  N   A+ V ++M     K  F + ++C         ++ I GLC
Sbjct: 443 NAYTCSSLMKGFFEAGNSHRAVEVWKDMA----KHNFTQNEVCY--------SVLIHGLC 490

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK--NLVAD 313
           K+G V E M ++  +    C+  V  ++S+I G    G+ E A +L+N++ C+  +   D
Sbjct: 491 KDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPD 550

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           VV YNIL++ L K+  I +   LL SM + GC  D+ T
Sbjct: 551 VVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVT 588



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 163/342 (47%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +TFN +IK  C  G + DA Q+ + M    C P+V T  TL+ GL +   ++  + L 
Sbjct: 198 NVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLL 257

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL- 136
            EM        G + P+   +  LI+GLCK   + +   L   M  KG     +  NTL 
Sbjct: 258 DEM-----QIDGCF-PSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLI 311

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC K KL +A  LL+ M+     P + TY  ++NG    G+      +   M  +G+ 
Sbjct: 312 HGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYC 371

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            + + YS LI+G  K    +EAM++ +EM + G++              T   +  IDGL
Sbjct: 372 VNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYEL------------NTIVYSAVIDGL 419

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C++G   + +E+   +    C       +SL++G  + G    A E++  ++  N   + 
Sbjct: 420 CRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNE 479

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V Y++LIH L K+G++K+   +   M   GC  DV  +++++
Sbjct: 480 VCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMI 521



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 150/343 (43%), Gaps = 53/343 (15%)

Query: 54  GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG---MGDFGGIYK---------PNVF 101
           G  P+    D +     + G+  L       ++N    +GDF  + K           +F
Sbjct: 65  GIEPDPPISDKIFKSGPKMGSYRLGDSTFYSLINNYANLGDFKSLEKVLDRMKCEKRVIF 124

Query: 102 --CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL- 158
             C+  +     K  L ++  DLF  M      A    CK+T     N +L +++Q GL 
Sbjct: 125 EKCFIVIFKAYGKAHLPEKAVDLFDRM------ACEFECKRTG-KSFNSVLNVIIQEGLF 177

Query: 159 ------------------NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                             +P + T+  ++   C VG V+ AI +F  M  +   PDV++Y
Sbjct: 178 HRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTY 237

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
             L++G CK   ++EA+++  EM ++G          C   P TF  N+ I+GLCK G +
Sbjct: 238 CTLMDGLCKADRIDEAVSLLDEMQIDG----------CFPSPVTF--NVLINGLCKKGDL 285

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
               +L   + +  C      +N+LI G C  G  E A  L +++     V +VV Y  +
Sbjct: 286 SRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTI 345

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           I+ L K+G+      +L  MEE G  ++   ++TL IS L KE
Sbjct: 346 INGLVKQGRALDGACVLALMEERGYCVNEYVYSTL-ISGLFKE 387


>gi|42567170|ref|NP_194410.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659854|gb|AEE85254.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 369

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 161/336 (47%), Gaps = 39/336 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT +SL+ GFC+  +I+DA  +  +M   G + +V     LI  L +    N  +    E
Sbjct: 14  VTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCK----NRLVVPALE 69

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL------- 136
           ++  M D G    PNV  Y SLI GLCK  RL D  + L  EM  K IN N +       
Sbjct: 70  VLKRMKDRG--ISPNVVTYSSLITGLCKSGRLADAERRLH-EMDSKKINPNVITFSALID 126

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
              K+ KL + + + ++M+Q  ++P +FTY+ L+ G C+  +V+ AI + D M  KG  P
Sbjct: 127 AYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTP 186

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IF 232
           +V +YS L NG+ K+  V++ + +  +M   G                          +F
Sbjct: 187 NVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVF 246

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
             M    ++P   + NI + GL  NG V + +  F  ++ +  +L +  +  +I G CK 
Sbjct: 247 GYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKA 306

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            + + A +LF KL  K +  D  AY I+I  L + G
Sbjct: 307 CMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAG 342



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 120/268 (44%), Gaps = 20/268 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           +P++    SL++G C    +     +  +M+  GI  + +        LCK   +V A  
Sbjct: 10  EPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALE 69

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L+ M  RG++P + TY+ L+ G C  G++  A      M  K   P+V ++S LI+ Y 
Sbjct: 70  VLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYA 129

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K   + +  +V + MI              ++ P  FT +  I GLC +  V E +++  
Sbjct: 130 KRGKLSKVDSVYKMMIQ------------MSIDPNVFTYSSLIYGLCMHNRVDEAIKMLD 177

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +    C   V  +++L  G  K    +   +L + +  + + A+ V+ N LI    + G
Sbjct: 178 LMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAG 237

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
           +I     +   M  NG   ++ ++N ++
Sbjct: 238 KIDLALGVFGYMTSNGLIPNIRSYNIVL 265



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 12/209 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           MM+ G+ P I T + L+NG+CL   +  A+ +   M + G   DV   ++LI+  CKN  
Sbjct: 4   MMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRL 63

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           V  A+ V + M   G            + P   T +  I GLCK+G + +       ++ 
Sbjct: 64  VVPALEVLKRMKDRG------------ISPNVVTYSSLITGLCKSGRLADAERRLHEMDS 111

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 V  F++LI    K G       ++  +   ++  +V  Y+ LI+ L    ++ +
Sbjct: 112 KKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDE 171

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQ 361
              +L  M   GC  +V T++TL   F +
Sbjct: 172 AIKMLDLMISKGCTPNVVTYSTLANGFFK 200



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 112/279 (40%), Gaps = 80/279 (28%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T++SLI G CM   + +A +++  M + GC PNV T  TL  G  ++  ++      
Sbjct: 152 NVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVD------ 205

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
                                    DG+   +L+D       +M  +G+ ANT+ C    
Sbjct: 206 -------------------------DGI---KLLD-------DMPQRGVAANTVSC---- 226

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                                    L+ GY   GK+++A+ +F  M   G +P++ SY++
Sbjct: 227 -----------------------NTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNI 263

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           ++ G   N  VE+A++    M     +K  N++       +  T  I I G+CK   V E
Sbjct: 264 VLAGLFANGEVEKALSRFEHM-----QKTRNDL-------DIITYTIMIHGMCKACMVKE 311

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
             +LF  L+    E   + +  +I    + G+   A  L
Sbjct: 312 AYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADAL 350


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 40/367 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +N LI G+C  G+I     L+ +M T G  P V T   +I  L R G++     L  E
Sbjct: 117 VFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGE 176

Query: 85  M-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL- 137
           M   G+        PNV  Y ++I+ LCK R   Q  D+  +M     N      NT++ 
Sbjct: 177 MRARGL-------SPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIA 229

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             C++  + EA +LL   ++RGL P   +YTPL++G+C+ G+  VA  L   M  +G  P
Sbjct: 230 GFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTP 289

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREM-----------------------ILNGFKKIF 232
           D+ +   LI+G   +  V +A+ V  +M                       +L+  K + 
Sbjct: 290 DMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLL 349

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            EM    V P+ F     IDG  ++  + +  ++F  +E   C   V  +N +I+G CKF
Sbjct: 350 EEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKACPDIVA-YNVMIKGYCKF 408

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G+ + A    + +     + D   Y  L+    K+G I     LL  M +  C  ++ T+
Sbjct: 409 GMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTY 468

Query: 353 NTLMISF 359
            +L+  +
Sbjct: 469 ASLICGY 475



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 172/399 (43%), Gaps = 54/399 (13%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL      IRR   P N +++  LI GFC+ G    AS L+ +M   G  P++ T   LI
Sbjct: 240 ALKLLREAIRRGLEP-NQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALI 298

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL  +G +N  L + ++M            P+   Y  LI GLCK R++   K+L  EM
Sbjct: 299 HGLVVSGQVNDALIVREKMAERQ------VMPDANIYNVLISGLCKKRMLSAAKNLLEEM 352

Query: 127 KDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            ++ +  +  +         +  KL +A ++ E M ++   P I  Y  ++ GYC  G +
Sbjct: 353 LEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKAC-PDIVAYNVMIKGYCKFGMM 411

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
             A+    SM + G +PD F+Y+ L++GY K  ++  ++ +  +M              +
Sbjct: 412 KEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASL 471

Query: 225 LNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           + G+         + +F +M+   + P      + I  L K   V++    F  + +++C
Sbjct: 472 ICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHC 531

Query: 276 ELFVEIFNSLIRGC--CKFGIF-------EIASE------LFNKLSCKNLVADVVAYNIL 320
                  + L+ G   C+ G+        + A E      +F  L    L   + AYN +
Sbjct: 532 PPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRISAYNAI 591

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           I +L +   + K   L   M   GC  D  TF +L+  F
Sbjct: 592 IFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLSLLYGF 630



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 145/349 (41%), Gaps = 61/349 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +D +   +++G C+EG + +   L++     GC P     + LI G  R G++   L L 
Sbjct: 80  DDYSTCVMVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLL 139

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------- 135
            EM     +  GI  P V  YG++I  L +   + + + L  EM+ +G++ N        
Sbjct: 140 GEM-----ETKGII-PTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVI 193

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK     +A+ +L  M++   NP + T+  ++ G+C  G V  A+ L     R+G  
Sbjct: 194 NALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLE 253

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  SY+ LI+G+C       A ++  EM+  G              P+  T    I GL
Sbjct: 254 PNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGH------------TPDMITLGALIHGL 301

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
             +G V + +                    ++R                K++ + ++ D 
Sbjct: 302 VVSGQVNDAL--------------------IVR---------------EKMAERQVMPDA 326

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             YN+LI  L K+  +     LL  M E     D   + TL+  F++ +
Sbjct: 327 NIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSD 375



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 58/128 (45%)

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           + ++ EM +     + ++  + + GLC  G V E   L        C      +N LI G
Sbjct: 66  RGLYGEMLVREGGADDYSTCVMVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDG 125

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C+ G       L  ++  K ++  VV Y  +IH LG++G + K   LL  M   G + +
Sbjct: 126 YCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPN 185

Query: 349 VDTFNTLM 356
           V  +NT++
Sbjct: 186 VQIYNTVI 193



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 12/182 (6%)

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A  L+  M  +    D +S  V++ G C    VEE   +       G             
Sbjct: 65  ARGLYGEMLVREGGADDYSTCVMVRGLCLEGRVEEGRGLIEARWGEG------------C 112

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           VP     N+ IDG C+ G +   + L   +E       V  + ++I    + G       
Sbjct: 113 VPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVES 172

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           L  ++  + L  +V  YN +I+AL K     + + +L  M ++    DV TFNT++  F 
Sbjct: 173 LLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFC 232

Query: 361 QK 362
           ++
Sbjct: 233 RE 234


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 154/308 (50%), Gaps = 26/308 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N LIKG    G + +A  + + +   GCRP  TT   LI GL + G +N  LK+ +E
Sbjct: 362 VSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKE 421

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC------ 138
             +G G      K + + Y S++DGLCK+  +D+   +  +M  +G   +  +C      
Sbjct: 422 AEDGPG------KLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLING 475

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             + +KL +A      M  +G +P I +Y  L+ G C   + + A +    M  K + PD
Sbjct: 476 FVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPD 535

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + + S+L++G C+   +E A+N+ ++ +  GFK            P+    NI + GLC 
Sbjct: 536 MITCSLLMDGLCQEKKIEMALNLWQQALDKGFK------------PDITMYNILMHGLCS 583

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + + ++L+  ++ S C   +   N+L+ G  K   +E ASE+++ +    L  D+++
Sbjct: 584 VCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIIS 643

Query: 317 YNILIHAL 324
           YNI I  L
Sbjct: 644 YNITIKGL 651



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 173/370 (46%), Gaps = 39/370 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N LIK  C +  I  A  L+  M +   +P+V +  TLI G+ + G++   LK+  EM
Sbjct: 153 TYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEM 212

Query: 86  -VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTL------- 136
            V G+         +V CY  LIDG  K    D+ K+++  + KD  +  N +       
Sbjct: 213 SVRGV-------VADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMIN 265

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LCK  +  E+  + E M +      +FTY+ L++G C  G ++ A+ ++  +     + 
Sbjct: 266 GLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVV 325

Query: 196 DVFSYSVLINGYCKNFNVEEAMN-------------VSREMILNGF---KKIFNEMKLCN 239
           D  +++ ++NG+C+   ++E+               VS  +++ G     K+   + +  
Sbjct: 326 DAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYNILIKGLFENGKVEEAISIWE 385

Query: 240 VV------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           ++      PE+ T  + I GLCKNG + + +++F   E    +L    ++S++ G CK G
Sbjct: 386 LLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEG 445

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A  + N++  +    D    N LI+   +  +++        ME  GC+  + ++N
Sbjct: 446 RMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYN 505

Query: 354 TLMISFLQKE 363
           TL+    + E
Sbjct: 506 TLIKGLCKAE 515



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 170/370 (45%), Gaps = 31/370 (8%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVT-FNSLIKGFCMEGNIRDASQLVKKMAT-FGCRPNVTT 61
           +LGAL  F     R    + DVT +N LI GF   G+     ++ +++       PNV T
Sbjct: 202 LLGALKVFDEMSVRGV--VADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVT 259

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            + +I GL + G  + +L++ + M     +       ++F Y SLI GLC+   +D    
Sbjct: 260 YNIMINGLCKCGRFDESLEIWERMTKNERE------KDMFTYSSLIHGLCEAGNIDGAVR 313

Query: 122 LFMEMKDK-----GINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           ++ E+ +       +  N +L   C+  K+ E+  L  +M +     V+ +Y  L+ G  
Sbjct: 314 VYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVV-SYNILIKGLF 372

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             GKV  AI++++ + +KG  P+  +Y VLI+G CKN  + +A+            KIF 
Sbjct: 373 ENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKAL------------KIFK 420

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           E +      + +  +  +DGLCK G + E + +   ++    +L   + N LI G  +  
Sbjct: 421 EAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRAS 480

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A   F ++ CK     +V+YN LI  L K  +  +    +  M E     D+ T +
Sbjct: 481 KLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCS 540

Query: 354 TLMISFLQKE 363
            LM    Q++
Sbjct: 541 LLMDGLCQEK 550



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 168/361 (46%), Gaps = 28/361 (7%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGN-IRDASQLVKKMATFGCRPNVTTCD 63
           L AL  F S  R   +  +   F+ +++    +   +   S++V  +    C        
Sbjct: 27  LSALSLFESASRN--KSHSAHVFHHILRRLAADSRLVSHVSRIVDIVKAQKCPCKEDVAL 84

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL- 122
           T+I    +    N  L   Q M +  G      KP V  Y +L++   +    D+ +   
Sbjct: 85  TVIKAYAKNKMSNKALDTFQNMQDIFG-----CKPGVRSYNTLLNAFVELNEWDRAESFS 139

Query: 123 -FMEMKDKGINANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            + E  D   N  T      + CKK ++ +A  LL+ M  + L P +F+Y  L+NG   V
Sbjct: 140 RYFESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKV 199

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G +  A+ +FD M+ +G + DV  Y++LI+G+ K+ + ++   +   ++           
Sbjct: 200 GDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLV----------- 248

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           K C+V P   T NI I+GLCK G   E +E++  +  +  E  +  ++SLI G C+ G  
Sbjct: 249 KDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNI 308

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + A  ++ ++   +LV D V +N +++   + G+IK+   L + M +  C   V ++N L
Sbjct: 309 DGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQT-VVSYNIL 367

Query: 356 M 356
           +
Sbjct: 368 I 368



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 166/353 (47%), Gaps = 25/353 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           +   ++ C    N VT+N +I G C  G   ++ ++ ++M       ++ T  +LI GL 
Sbjct: 244 WERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLC 303

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
             GN++  +++++E+V            +   + ++++G C+   + ++ +L+M M  + 
Sbjct: 304 EAGNIDGAVRVYKEIVESS------LVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKEN 357

Query: 131 ----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
               ++ N L   L +  K+ EA  + EL+ ++G  P   TY  L++G C  G++N A+ 
Sbjct: 358 CQTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALK 417

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           +F          D ++YS +++G CK   ++EA+++  +M   G+K             +
Sbjct: 418 IFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYK------------LD 465

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
              CN  I+G  +   + + +  F  +E   C   +  +N+LI+G CK   F  A     
Sbjct: 466 PHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVK 525

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++  K    D++  ++L+  L +E +I+    L     + G   D+  +N LM
Sbjct: 526 EMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILM 578


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 169/347 (48%), Gaps = 28/347 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N+LI+GFC  G +++AS++ + M   G RPNV T   LI GL   G     L+L   
Sbjct: 283 ITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNL 342

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+    +      PN   Y  +I+ LCKD LV    ++   MK +    + +        
Sbjct: 343 MIEKDEE------PNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGG 396

Query: 137 LCKKTKLVEANRLLELMMQRG--LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           LC K  L EA++LL LM++     +P + +Y  L++G C   +++ A+ ++D +  K   
Sbjct: 397 LCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGA 456

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  + ++L+N   K  +V +AM            +++ ++    +V  + T    IDG 
Sbjct: 457 GDRVTTNILLNSTLKAGDVNKAM------------ELWKQISDSKIVRNSDTYTAMIDGF 504

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G +     L   + +S  +  V  +N L+   CK G  + A  LF ++   N   DV
Sbjct: 505 CKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDV 564

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           V++NI+I    K G IK    LL+ M   G + D+ T++ L+  FL+
Sbjct: 565 VSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLK 611



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 171/344 (49%), Gaps = 28/344 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N++I+GFC    +  A +L  +M   GC  ++ T   LI    + G M+  +   +EM
Sbjct: 179 SYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM 238

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
                 F G+ + ++  Y SLI G C    +D+ K LF E+ ++G     I  NTL+   
Sbjct: 239 -----KFMGL-EADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGF 292

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  +L EA+ + E M++RG+ P ++TYT L++G C VGK   A+ L + M  K   P+ 
Sbjct: 293 CKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNA 352

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+++IN  CK+  V +A+            +I   MK     P+  T NI + GLC  
Sbjct: 353 VTYNIIINKLCKDGLVADAV------------EIVELMKKRRTRPDNITYNILLGGLCAK 400

Query: 258 GHVLEVMELFPTL--EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           G + E  +L   +  + S  +  V  +N+LI G CK      A ++++ L  K    D V
Sbjct: 401 GDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRV 460

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             NIL+++  K G + K   L   + ++    + DT+  ++  F
Sbjct: 461 TTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 159/362 (43%), Gaps = 25/362 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K   AL      I +   P N VT+N +I   C +G + DA ++V+ M     RP+  T 
Sbjct: 332 KTKEALQLLNLMIEKDEEP-NAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITY 390

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + L+ GL   G+++   KL   M+           P+V  Y +LI GLCK+  + Q  D+
Sbjct: 391 NILLGGLCAKGDLDEASKLLYLMLKD----SSYTDPDVISYNALIHGLCKENRLHQALDI 446

Query: 123 FMEMKDK-----GINANTLLCKKTKLVEANRLLELMMQRGLNPVIF---TYTPLLNGYCL 174
           +  + +K      +  N LL    K  + N+ +EL  Q   + ++    TYT +++G+C 
Sbjct: 447 YDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCK 506

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G +NVA  L   M      P VF Y+ L++  CK  ++++A             ++F E
Sbjct: 507 TGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAW------------RLFEE 554

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+  N  P+  + NI IDG  K G +     L   +  +     +  ++ LI    K G 
Sbjct: 555 MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGY 614

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A   F+K+       D    + ++     +G+  K   L+  + +    LD +   T
Sbjct: 615 LDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCT 674

Query: 355 LM 356
           +M
Sbjct: 675 VM 676



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 127/269 (47%), Gaps = 22/269 (8%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+VF Y ++I G C+ + +++  +L  EMK  G + + +         CK  K+ EA   
Sbjct: 175 PDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGF 234

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L+ M   GL   +  YT L+ G+C  G+++   ALFD +  +G  P   +Y+ LI G+CK
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              ++EA  +   MI  G            V P  +T    IDGLC  G   E ++L   
Sbjct: 295 LGQLKEASEIFEFMIERG------------VRPNVYTYTGLIDGLCGVGKTKEALQLLNL 342

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +   + E     +N +I   CK G+   A E+   +  +    D + YNIL+  L  +G 
Sbjct: 343 MIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGD 402

Query: 330 IKKENYLLLSMEENGCALDVD--TFNTLM 356
           + + + LL  M ++    D D  ++N L+
Sbjct: 403 LDEASKLLYLMLKDSSYTDPDVISYNALI 431



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 12/208 (5%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L LM++RG    ++ +  LL G C   +   A++L   M R   MPDVFSY+ +I G+C
Sbjct: 129 VLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFC 188

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           +   +E+A+ ++            NEMK         T  I ID  CK G + E M    
Sbjct: 189 EGKELEKALELA------------NEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLK 236

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            ++    E  + ++ SLIRG C  G  +    LF+++  +      + YN LI    K G
Sbjct: 237 EMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLG 296

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
           Q+K+ + +   M E G   +V T+  L+
Sbjct: 297 QLKEASEIFEFMIERGVRPNVYTYTGLI 324



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 110/243 (45%), Gaps = 23/243 (9%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+  +  +A  LL  M +  L P +F+Y  ++ G+C   ++  A+ L + M   G    
Sbjct: 152 LCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWS 211

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFN 233
           + ++ +LI+ +CK   ++EAM   +EM              ++ GF         K +F+
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFD 271

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           E+      P   T N  I G CK G + E  E+F  +        V  +  LI G C  G
Sbjct: 272 EVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVG 331

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A +L N +  K+   + V YNI+I+ L K+G +     ++  M++     D  T+N
Sbjct: 332 KTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYN 391

Query: 354 TLM 356
            L+
Sbjct: 392 ILL 394



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 12/196 (6%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           + + LL  Y  + K   A  +   M ++GF  +V+++++L+ G C+N    +A+++ REM
Sbjct: 109 SLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREM 168

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
             N            +++P+ F+ N  I G C+   + + +EL   ++ S C   +  + 
Sbjct: 169 RRN------------SLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWG 216

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            LI   CK G  + A     ++    L AD+V Y  LI      G++ +   L   + E 
Sbjct: 217 ILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLER 276

Query: 344 GCALDVDTFNTLMISF 359
           G +    T+NTL+  F
Sbjct: 277 GDSPCAITYNTLIRGF 292


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 187/430 (43%), Gaps = 95/430 (22%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ S+I G C + ++  A Q+  +MA  GC PN  T  TLI GL  +G +N    L +EM
Sbjct: 252 TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 311

Query: 86  V-NG-----------------MGDFGGIYK-----------PNVFCYGSLIDGLCKDRLV 116
           + +G                 MG +   ++           PNV+ Y +LI GLC   L+
Sbjct: 312 ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLL 371

Query: 117 DQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
                LF  M   G+  NT        +L +  ++  A  +L LM + G +P I TY  +
Sbjct: 372 KVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------- 219
           + GYC++G    A+ + ++M ++G   ++ +Y+ +I GYC + N   A+ +         
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 220 -----SREMILNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                S   ++ GF KI         FNEM    + P   T    IDG CK+  +     
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 266 LFPTLEISNCELFVEIFNSLIRGC-----------------------------------C 290
           L   ++ S C   V+ +N LI G                                    C
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLC 611

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G   +A E+FNK+  +  + +++ Y+ LI ALG+EG++++   L   +E +G   D  
Sbjct: 612 KNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEI 671

Query: 351 TFNTLMISFL 360
           T+  ++ +++
Sbjct: 672 TYVKMIEAYI 681



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 137/268 (51%), Gaps = 20/268 (7%)

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           +F Y +L+  L +  +     D +  M  +G+  N L        LCK   + +A  +++
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            + +  ++P  FTYT ++ G+C    ++ A+ +F+ MA++G  P+  +YS LING C + 
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG 299

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            V EA ++ REMIL+G            ++P   TC   I  LC  G   +   LF  ++
Sbjct: 300 RVNEAFDLIREMILHG------------ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
              CE  V  + +LI G C  G+ ++A  LF+++S   +  + V YN LI+ L +  +IK
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIK 407

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
               +L  M  NGC+ ++ T+N ++  +
Sbjct: 408 YAFVVLNLMGRNGCSPNIVTYNEMIKGY 435



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 177/412 (42%), Gaps = 66/412 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A++   + ++R +   N VT+N++IKG+C  GN   A +++  M   GC+P+  +   LI
Sbjct: 444 AMLVMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  +   M     L  EMV+      G+  PN   Y +LIDG CKD  +D    L   M
Sbjct: 503 CGFCKISKMESAFGLFNEMVDD-----GLC-PNEVTYTALIDGYCKDEKLDTATSLLEHM 556

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K  G   N          L K+     A  L ++M++ G+ P + TYT +++G C  G  
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 616

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---------- 228
           ++A+ +F+ M  +G +P++ +YS LI    +   VEEA N+  E+  +G           
Sbjct: 617 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKM 676

Query: 229 ----------KKIFN---EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL--FPTLEIS 273
                     +  FN    M      P  +T  + I GL KN ++L    L   P + + 
Sbjct: 677 IEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-KNEYLLADQRLAALPDV-VP 734

Query: 274 NCE------------------------LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           NC                         L V++ N+L+      G +  A+EL   +  + 
Sbjct: 735 NCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQG 794

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           L  D  AYN L+ +L +   +     +   M   GC + ++ +  L+ +  Q
Sbjct: 795 LCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQ 846



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 154/369 (41%), Gaps = 60/369 (16%)

Query: 48  KKMATFGCRPNVTTCDTLITGLRRTGN-------------------------MNLTLKLH 82
            +M + G +PN+   + +I  L + GN                         M L     
Sbjct: 204 HRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRK 263

Query: 83  QEMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANT- 135
            ++ + +  F  + K    PN   Y +LI+GLC    V++  DL  EM   GI   A+T 
Sbjct: 264 HDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTC 323

Query: 136 -----LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LC      +A RL   M  +G  P ++TYT L++G C+ G + VAI LF  M+R
Sbjct: 324 TGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSR 383

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM------------ 235
            G  P+  +Y+ LIN   +N  ++ A  V   M  NG       +NEM            
Sbjct: 384 DGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKK 443

Query: 236 ---KLCNVVPETFTCNI-----FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
               + N++    + N+      I G C +G+    + +   +    C+     +  LI 
Sbjct: 444 AMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELIC 503

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G CK    E A  LFN++    L  + V Y  LI    K+ ++     LL  M+ +GC  
Sbjct: 504 GFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP 563

Query: 348 DVDTFNTLM 356
           +V T+N L+
Sbjct: 564 NVQTYNVLI 572


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 163/354 (46%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 102 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 161

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++    L   M+       G+ +P+V+ Y  LI+GLCK+  +D     
Sbjct: 162 NTLMNGYIRXGDLDEGFXLKSXMLA-----SGV-QPDVYTYSVLINGLCKESKMD----- 210

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                                 +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 211 ----------------------DANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 248

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 249 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK------------P 296

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    I+G CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 297 DKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKML 356

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K G +   + LL  M+ +G    V T+N LM
Sbjct: 357 REMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLM 410



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 153/341 (44%), Gaps = 26/341 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 56  FSGLIAAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 115

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 116 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 169

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E   L   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 170 RXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 229

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 277

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 278 DLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYT 337

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            LI    +EG+      +L  M   G   D  T+  ++  F
Sbjct: 338 ALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 378



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 16/193 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G++     L 
Sbjct: 227 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLI 286

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN----ANTLL 137
            EM V G+       KP+   Y +LI+G CK+  +D   +    M  + I     A T L
Sbjct: 287 DEMSVKGL-------KPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTAL 339

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G 
Sbjct: 340 ISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGH 399

Query: 194 MPDVFSYSVLING 206
           +P V +Y+VL+NG
Sbjct: 400 VPSVVTYNVLMNG 412



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 26/236 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI G C E  + DA++L  +M   G  PN  T  TLI G  + G ++L ++++++M
Sbjct: 195 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 254

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
           ++          P++  Y +LI GLCK   + Q   L  EM  KG+  + +         
Sbjct: 255 LSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGC 308

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+  L  A    + M+Q  +      YT L++G C  G+   A  +   M   G  PD 
Sbjct: 309 CKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDA 368

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            +Y+++IN +CK  +V     + +EM  +G             VP   T N+ ++G
Sbjct: 369 RTYTMIINEFCKXGDVWXGSKLLKEMQRDGH------------VPSVVTYNVLMNG 412


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 166/357 (46%), Gaps = 49/357 (13%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A++       R  RP N + FNS+I  FC    I  A + VKKM   G  P+V T + LI
Sbjct: 296 AILTIEQMESRGLRP-NCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILI 354

Query: 67  TGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            G  R    +   ++ +EM  NG        KPNV  YGSLI+ LCKD            
Sbjct: 355 DGYGRLCVFSRCFQILEEMEENG-------EKPNVISYGSLINCLCKD------------ 395

Query: 126 MKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
                           K++EA  +L  M+ RG+ P    Y  L++G C VGK+  A+  F
Sbjct: 396 ---------------GKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFF 440

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           D M++ G    + +Y+ LI G CK   ++EA            +++F  +      P+  
Sbjct: 441 DEMSKNGIGATIVTYNSLIKGLCKMGKLKEA------------EEMFFLITSTGHCPDVI 488

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T N  I G    G+  + +EL+ T++    +  +  F+ LI GC K GI ++   LFN++
Sbjct: 489 TYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGI-KLKETLFNEM 547

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              NL  D V YN +IH   + G ++K   L   M + G   D  T+N+L++  L++
Sbjct: 548 LQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKE 604



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 180/420 (42%), Gaps = 74/420 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F +  RR   P N   +N LI G C E  IRDA +L  +M+     PN  T +TLI
Sbjct: 85  AMELFETMKRRKVVP-NVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLI 143

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK------ 120
            G  + G +++ + L + M           +P++  + SL+ GLCK R +++ +      
Sbjct: 144 DGYCKAGEVDVAIGLRERMKKEK------VEPSIITFNSLLSGLCKARRIEEARCMLNEI 197

Query: 121 ------------------------------DLFMEMKDKGINANTL--------LCKKTK 142
                                         DL+ E   KG+  +          LCK+ K
Sbjct: 198 KCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGK 257

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           + +A  +L+ +++ GL P    Y  ++NGYC +G ++ AI   + M  +G  P+  +++ 
Sbjct: 258 VEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNS 317

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCN 239
           +I+ +C+   +++A    ++M+  G                         +I  EM+   
Sbjct: 318 VIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENG 377

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
             P   +    I+ LCK+G +LE   +   +          I+N LI G C  G    A 
Sbjct: 378 EKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREAL 437

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             F+++S   + A +V YN LI  L K G++K+   +   +   G   DV T+N+L+  +
Sbjct: 438 RFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGY 497



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 157/358 (43%), Gaps = 39/358 (10%)

Query: 35  CMEGNIR-DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFG 93
           C E  +    S+L   M   G  P+      ++  L  +   +  L L +EMV G+G   
Sbjct: 6   CSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMV-GLG--- 61

Query: 94  GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVE 145
             ++P+   YG  +    K   +    +LF  MK + +  N          LCK+ ++ +
Sbjct: 62  --FRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRD 119

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A +L   M  R L P   T+  L++GYC  G+V+VAI L + M ++   P + +++ L++
Sbjct: 120 AEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLS 179

Query: 206 GYCKNFNVEEAMNVSREMILNGFK------------------------KIFNEMKLCNVV 241
           G CK   +EEA  +  E+  NGF                          ++ E     V 
Sbjct: 180 GLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVK 239

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
            + +TC+I ++GLCK G V +  E+  +L          I+N+++ G C+ G  + A   
Sbjct: 240 IDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILT 299

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             ++  + L  + +A+N +I    +   I K    +  M   G A  V+T+N L+  +
Sbjct: 300 IEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGY 357



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 15/225 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+NSLI G+   GN +   +L + M   G +P + T   LI+G  + G     +KL + 
Sbjct: 488 ITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEG-----IKLKET 542

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLC- 138
           + N M        P+   Y ++I    +   V +   L  EM D G+       N+L+  
Sbjct: 543 LFNEMLQMN--LSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILG 600

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K+ KL E   L++ M  +GL P   TY+ L+ G+C +   N A   +  M   GF+P+
Sbjct: 601 HLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPN 660

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           V   + L  G  K+  ++EA ++  EMI NG   +     L +V 
Sbjct: 661 VCICNELSTGLRKDGRLQEAQSICSEMIANGMDNLDTNEDLSDVA 705


>gi|296087908|emb|CBI35191.3| unnamed protein product [Vitis vinifera]
          Length = 248

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 119/209 (56%), Gaps = 12/209 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+ +G  P +F+Y  L+NGYC + +++ A+ LF+ M R+  +P+  +Y+ LI+G C    
Sbjct: 1   MVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGR 60

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           +++A+ + REM+             C  +P+  T  I +D LCKN H+ + M L   +E 
Sbjct: 61  LQDAIALFREMVA------------CGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEG 108

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           SN +  ++I+  +I G C+ G  E A +LF+ LS K L  +V  YNI+ H L K G + +
Sbjct: 109 SNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDE 168

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQ 361
              L + M+EN C+ D  T+NT+   FL+
Sbjct: 169 ATKLFMEMDENACSADGCTYNTITQGFLR 197



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 124/266 (46%), Gaps = 40/266 (15%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRG 157
           PNVF Y +LI+G CK   +D+   LF EM           C++ KL+             
Sbjct: 8   PNVFSYNTLINGYCKIERMDKAMYLFEEM-----------CRQ-KLI------------- 42

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
             P   TY  L++G C VG++  AIALF  M   G +PD+ +Y +L++  CKN ++++AM
Sbjct: 43  --PNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAM 100

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                        +   ++  N+ P+     I IDG+C+ G + +  +LF  L     + 
Sbjct: 101 ------------ALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKP 148

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  +N +  G CK G+ + A++LF ++      AD   YN +     +  +  +   LL
Sbjct: 149 NVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLL 208

Query: 338 LSMEENGCALDVDTFNTLMISFLQKE 363
             M   G + DV T  TL++  L  +
Sbjct: 209 EEMLARGFSCDVST-TTLLVGMLSDD 233



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 14/215 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  ++N+LI G+C    +  A  L ++M      PN  T +TLI GL   G +   + L 
Sbjct: 9   NVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALF 68

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTL-- 136
           +EMV      G I  P++  Y  L+D LCK+  +D+   L   ++    D  I   T+  
Sbjct: 69  REMVA----CGQI--PDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVI 122

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             +C+  +L +A  L   +  +GL P ++TY  + +G C  G ++ A  LF  M      
Sbjct: 123 DGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACS 182

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
            D  +Y+ +  G+ +N     A+ +  EM+  GF 
Sbjct: 183 ADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFS 217



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 14/186 (7%)

Query: 50  MATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109
           M   GC PNV + +TLI G  +   M+  + L +EM            PN   Y +LI G
Sbjct: 1   MVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQK------LIPNTVTYNTLIHG 54

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPV 161
           LC    +     LF EM   G   + +        LCK   L +A  LL+ +    L+P 
Sbjct: 55  LCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPD 114

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           I  YT +++G C  G++  A  LF +++ KG  P+V++Y+++ +G CK   ++EA  +  
Sbjct: 115 IQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFM 174

Query: 222 EMILNG 227
           EM  N 
Sbjct: 175 EMDENA 180


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 164/346 (47%), Gaps = 46/346 (13%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F S +     P N  T+N LI+  C  G+ ++A  +++ M   GC PNV T +TL+    
Sbjct: 138 FDSMLSDGVAP-NVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFF 196

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R G ++       E + GM   GG+ KPN+  + S+++G+C                   
Sbjct: 197 RAGEVD-----GAERLVGMMLDGGL-KPNLVTFNSMVNGMC------------------- 231

Query: 131 INANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                   K  K+ +A ++ + MM+ GL P   +Y  L+ GYC  G  + A+++F  M +
Sbjct: 232 --------KAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQ 283

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           KG MPDV +++ LI+  CK  N+E A+ + R+M   G +   NE+        TFT    
Sbjct: 284 KGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQ--MNEV--------TFTA--L 331

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           IDG CK G + + +     +     +  V  +N+LI G C  G  + A EL +++  K L
Sbjct: 332 IDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGL 391

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             DVV Y+ +I A  K         L   M E G   D  T+++L+
Sbjct: 392 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLI 437



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 153/322 (47%), Gaps = 52/322 (16%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N+VTF +LI GFC +G + DA   V+ M     +P+V   + LI G    G M+   +L
Sbjct: 323 MNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEAREL 382

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EM     +  G+ KP+V  Y ++I   CK+       +L  +M +KG+  + +     
Sbjct: 383 LHEM-----EAKGL-KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSL 436

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ +L +A+ L + M++ GL P  FTYT L++G+C  G V  A++L D M + G 
Sbjct: 437 IRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGV 496

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PDV +YSVLING  K+    EA  +          K+++E        E    N   D 
Sbjct: 497 LPDVVTYSVLINGLSKSARAMEAQQL--------LFKLYHE--------EPIPANTKYDA 540

Query: 254 L---CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           L   C+   +  V+                   +L++G C  G+   A +++  +  +N 
Sbjct: 541 LMHCCRKAELKSVL-------------------ALLKGFCMKGLMNEADKVYQSMLDRNW 581

Query: 311 VADVVAYNILIHALGKEGQIKK 332
             D   Y++LIH   + G + K
Sbjct: 582 NLDGSVYSVLIHGHCRAGNVMK 603



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 126/270 (46%), Gaps = 20/270 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLC---KKTKLVEANRL 149
           PNV+ Y  LI  LC      +   +  +M+  G     +  NTL+    +  ++  A RL
Sbjct: 148 PNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERL 207

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           + +M+  GL P + T+  ++NG C  GK+  A  +FD M R+G  PD  SY+ L+ GYCK
Sbjct: 208 VGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCK 267

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                EA++V            F EM    ++P+  T    I  +CK G++   + L   
Sbjct: 268 AGCSHEALSV------------FAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQ 315

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     ++    F +LI G CK G  + A      +    +   VV YN LI+     G+
Sbjct: 316 MRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGR 375

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + +   LL  ME  G   DV T++T++ ++
Sbjct: 376 MDEARELLHEMEAKGLKPDVVTYSTIISAY 405



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 12/231 (5%)

Query: 132 NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           NA  L      L  A R  + M+  G+ P ++TY  L+   C  G    A+++   M   
Sbjct: 120 NAVLLALSDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGA 179

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+V +Y+ L+  + +   V+ A  +   M+  G K            P   T N  +
Sbjct: 180 GCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLK------------PNLVTFNSMV 227

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +G+CK G + +  ++F  +           +N+L+ G CK G    A  +F +++ K ++
Sbjct: 228 NGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIM 287

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            DVV +  LIH + K G ++    L+  M E G  ++  TF  L+  F +K
Sbjct: 288 PDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKK 338



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 48/200 (24%)

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G++P V +Y+ ++                 +  L   ++ F+ M    V P  +T NI I
Sbjct: 111 GYVPSVLAYNAVLLALS-------------DASLTSARRFFDSMLSDGVAPNVYTYNILI 157

Query: 252 DGLCKNGHVLEVMEL-----------------------FPTLEISNCELFVEI------- 281
             LC  GH  E + +                       F   E+   E  V +       
Sbjct: 158 RALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLK 217

Query: 282 -----FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
                FNS++ G CK G  E A ++F+++  + L  D V+YN L+    K G   +   +
Sbjct: 218 PNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSV 277

Query: 337 LLSMEENGCALDVDTFNTLM 356
              M + G   DV TF +L+
Sbjct: 278 FAEMTQKGIMPDVVTFTSLI 297


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 160/349 (45%), Gaps = 45/349 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EG IR +  +   +  +G RP+V + 
Sbjct: 115 KYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSF 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M        G+ +P+V+ Y  LI+GLCK+         
Sbjct: 175 NTLMNGYIRQGDLDKGFRLKSAM-----HASGV-QPDVYTYSVLINGLCKE--------- 219

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ EAN L   M+ +GL P   T+T L++G+C  GKV++A+
Sbjct: 220 ------------------SKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAM 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A N+  EM + G K            P
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLK------------P 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK+G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 310 DKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            ++    L  D   Y ++I+   K+G +   + LL  M+ +G    V T
Sbjct: 370 REMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 418



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L    ++E++
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+   CK+  +  ++ +F  ++  G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           ++  L +  RL   M   G+ P ++TY+ L+NG C   K++ A  LF  M  KG +P+  
Sbjct: 183 RQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGKVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   + +   +     + +LI G CK G  E A E   ++  +N+  D VAY 
Sbjct: 291 DLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKK 394



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 13/227 (5%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ ++  +  + + + + GL P + ++  L+NGY   G ++    L  +M   G  PD
Sbjct: 146 FCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPD 205

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V++YSVLING CK   ++EA  +  EM+  G            +VP   T    IDG CK
Sbjct: 206 VYTYSVLINGLCKESKMDEANELFXEMLDKG------------LVPNGVTFTTLIDGHCK 253

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG V   ME++  +   +    +  +N+LI G CK G  + A  L N++S K L  D + 
Sbjct: 254 NGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKIT 313

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y  LI    K+G ++        M E    LD D   T +IS L +E
Sbjct: 314 YTTLIDGSCKDGDLETAFEYRKRMIEENIRLD-DVAYTALISGLCQE 359


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 161/343 (46%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N++++  C  G ++ A +++ +     C P+V T   LI    +   +   +KL  E
Sbjct: 217 VTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDE 276

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M N         KP+V  Y  LI+G+CK+  +D+       M   G   N +        
Sbjct: 277 MRNKGS------KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRS 330

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C   + ++A +LL  M+++G +P + T+  L+N  C  G +  AI + + M   G  P+
Sbjct: 331 MCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPN 390

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY+ L++G+CK   ++ A+     M+  G              P+  T N  +  LCK
Sbjct: 391 SLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG------------CYPDIVTYNTLLTALCK 438

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V   +E+   L    C   +  +N++I G  K G  E A +L +++  K L  D++ 
Sbjct: 439 DGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIIT 498

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y+ L+  L +EG++ +       +E  G   +  T+N++M+  
Sbjct: 499 YSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 541



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 162/347 (46%), Gaps = 30/347 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N LI G+C  G I +A Q++ +M      P+V T +T++  L  +G      KL Q 
Sbjct: 185 ITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSG------KLKQA 235

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M            P+V  Y  LI+  CK+  V Q   L  EM++KG   + +        
Sbjct: 236 MEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLING 295

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +CK+ +L EA + L  M   G  P + T+  +L   C  G+   A  L   M RKG  P 
Sbjct: 296 ICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPS 355

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V ++++LIN  C+   +  A+++  +M ++G              P + + N  + G CK
Sbjct: 356 VVTFNILINFLCRQGLLGRAIDILEKMPMHG------------CTPNSLSYNPLLHGFCK 403

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              +   +E    +    C   +  +N+L+   CK G  ++A E+ N+LS K     ++ 
Sbjct: 404 EKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLIT 463

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           YN +I  L K G+ ++   LL  M   G   D+ T+++L +S L +E
Sbjct: 464 YNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSL-VSGLSRE 509



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 145/327 (44%), Gaps = 23/327 (7%)

Query: 38  GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97
           G + D  + ++ M   G  P++  C +LI G  R G      K    ++  +   G +  
Sbjct: 128 GELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKT----KKATWVMEILEQSGAV-- 181

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTLL---CKKTKLVEANRLLEL 152
           P+V  Y  LI G CK   +D    +   M +    +  NT+L   C   KL +A  +L+ 
Sbjct: 182 PDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDR 241

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
            +Q+   P + TYT L+   C    V  A+ L D M  KG  PDV +Y+VLING CK   
Sbjct: 242 QLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGR 301

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           ++EA+            K  N M      P   T NI +  +C  G  ++  +L   +  
Sbjct: 302 LDEAI------------KFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLR 349

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
             C   V  FN LI   C+ G+   A ++  K+       + ++YN L+H   KE ++ +
Sbjct: 350 KGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR 409

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
               L  M   GC  D+ T+NTL+ + 
Sbjct: 410 AIEYLDIMVSRGCYPDIVTYNTLLTAL 436



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 148/316 (46%), Gaps = 26/316 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N LI G C EG + +A + +  M ++GC+PNV T + ++  +  TG      KL  +
Sbjct: 287 VTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSD 346

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+           P+V  +  LI+ LC+  L+ +  D+  +M   G   N+L        
Sbjct: 347 MLRKG------CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHG 400

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+  A   L++M+ RG  P I TY  LL   C  GKV+VA+ + + ++ KG  P 
Sbjct: 401 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 460

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ +I+G  K    E A+            K+ +EM+   + P+  T +  + GL +
Sbjct: 461 LITYNTVIDGLSKVGKTERAI------------KLLDEMRRKGLKPDIITYSSLVSGLSR 508

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V E ++ F  LE          +NS++ G CK    + A +    +  K        
Sbjct: 509 EGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEAT 568

Query: 317 YNILIHALGKEGQIKK 332
           Y ILI  +  EG  K+
Sbjct: 569 YTILIEGIAYEGLAKE 584



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 145/308 (47%), Gaps = 28/308 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T N +++  C  G   DA +L+  M   GC P+V T + LI  L R G +   + + 
Sbjct: 320 NVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDIL 379

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           ++M ++G         PN   Y  L+ G CK++ +D+  +    M  +G     +  NTL
Sbjct: 380 EKMPMHGC-------TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTL 432

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   CK  K+  A  +L  +  +G +PV+ TY  +++G   VGK   AI L D M RKG 
Sbjct: 433 LTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL 492

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ +YS L++G  +   V+EA+            K F++++   + P   T N  + G
Sbjct: 493 KPDIITYSSLVSGLSREGKVDEAI------------KFFHDLEGLGIRPNAITYNSIMLG 540

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK+      ++    +    C+     +  LI G    G+ + A +L N+L  + LV  
Sbjct: 541 LCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKK 600

Query: 314 VVAYNILI 321
             A  + +
Sbjct: 601 SSAEQVAV 608



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 159/350 (45%), Gaps = 30/350 (8%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           + CY  +  +T+  LI+  C E  +  A +L+ +M   G +P+V T + LI G+ + G +
Sbjct: 245 KECYPDV--ITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRL 302

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINAN 134
           +  +K     +N M  +G   +PNV  +  ++  +C   R +D  K L  +M  KG + +
Sbjct: 303 DEAIKF----LNNMPSYG--CQPNVITHNIILRSMCSTGRWMDAEK-LLSDMLRKGCSPS 355

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +        LC++  L  A  +LE M   G  P   +Y PLL+G+C   K++ AI   D
Sbjct: 356 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLD 415

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M  +G  PD+ +Y+ L+   CK+  V+ A+            +I N++      P   T
Sbjct: 416 IMVSRGCYPDIVTYNTLLTALCKDGKVDVAV------------EILNQLSSKGCSPVLIT 463

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  IDGL K G     ++L   +     +  +  ++SL+ G  + G  + A + F+ L 
Sbjct: 464 YNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLE 523

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +  + + YN ++  L K  Q  +    L  M    C     T+  L+
Sbjct: 524 GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILI 573


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 170/373 (45%), Gaps = 46/373 (12%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N +I G C    I +A Q+ +KM      P+  +   LI GL + G +N    L Q+++
Sbjct: 291 YNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLL 350

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
           +      G+  P+   Y SLI GLC     D  ++LF +M  +G     +  N ++   C
Sbjct: 351 HS-----GV-TPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASC 404

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K+  L EA  L++ M++ G  P + TY  +++G C   +V  A+ LF+ M R G  P+  
Sbjct: 405 KRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRR 464

Query: 199 SYSVLINGYCKNFNVEEAMN-----------------------VSREMILNGF------- 228
           S++ +I G C+   +++A                         V+   +++G        
Sbjct: 465 SHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 524

Query: 229 --KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
             + +  +M      P   T N  I GLCK G + E  E+   +  S     V  +N+L+
Sbjct: 525 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 584

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G C+ G  E A EL + +  + L  +VV Y  L+  L K  ++ +   +   M+ +GCA
Sbjct: 585 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCA 644

Query: 347 LDVDTFNTLMISF 359
            ++ T+  L++ F
Sbjct: 645 PNLFTYTALILGF 657



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 153/340 (45%), Gaps = 35/340 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+N +I   C  G + +A  L+KKM   G  P+V T +T++ GL ++  +   L 
Sbjct: 390 PPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALL 449

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD---------LFMEMKDKG- 130
           L  EM   +G       PN   + ++I GLC+   +DQ            L   M D G 
Sbjct: 450 LFNEMER-LG-----CTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGH 503

Query: 131 ----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
               +  +TL   LC   ++ +A  LLE M++R   P + T   L++G C  G++  A  
Sbjct: 504 VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEARE 563

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           + D+M   G  PDV +Y+ L++G+C+    E A  +  +M+  G              P 
Sbjct: 564 VLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGL------------APN 611

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T    + GLCK   + E   +F  ++ S C   +  + +LI G C  G  +   +LF 
Sbjct: 612 VVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFG 671

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           ++ C  +  D V Y  L   L K G+  +   +L    E+
Sbjct: 672 EMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRES 711



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 149/348 (42%), Gaps = 35/348 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V + SLI G CM  +  DA +L   M   GC P+  T + +I    + G +     L ++
Sbjct: 359 VAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKK 418

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL-- 137
           M+         + P+V  Y +++DGLCK   V++   LF EM+  G   N     T++  
Sbjct: 419 MIEDG------HVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILG 472

Query: 138 ----------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                     C++ KL EA RLL+ M   G  P + TY+ L++G C + +V+ A  L + 
Sbjct: 473 LCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLED 532

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M ++   P V + + LI+G CK   ++EA  V   M+ +G              P+  T 
Sbjct: 533 MVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS------------PDVVTY 580

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           N  + G C+ G      EL   +        V  + +L+ G CK      A  +F ++  
Sbjct: 581 NTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS 640

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
                ++  Y  LI      GQ+     L   M   G + D   + TL
Sbjct: 641 SGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 688



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 171/403 (42%), Gaps = 60/403 (14%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           S +  C+ P  DV +N LI             ++V+ M   GC P+  T  T++ GL + 
Sbjct: 34  SLMEECHSPYPDV-YNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKA 92

Query: 73  GNMNLTLKLHQEMVNGM------------------GDFGGIYK-------PNVFCYGSLI 107
           G M+    +  EM + M                  G     ++        N   Y  ++
Sbjct: 93  GKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPVANSSAYNIVV 152

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGI--NANTLLCKKTKLVEANRL---LELMMQRGLNPVI 162
             LCK   VD   +L   M +K I   A +L      L+++ R+   L++  +    P +
Sbjct: 153 VALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCL 212

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--S 220
            T   LL G+C  G+V+ A  L  +M  +   PD  SY  +++G CK   VEEA+ +   
Sbjct: 213 VTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGD 272

Query: 221 REMI-----------LNGFK----------------KIFNEMKLCNVVPETFTCNIFIDG 253
           RE+            L G+                 ++F +M   NV P++++  I IDG
Sbjct: 273 RELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDG 332

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           L K G + +   LF  L  S        + SLI G C    F+ A ELF  ++ +     
Sbjct: 333 LAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPS 392

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            V YN++I A  K G +++   L+  M E+G   DV T+NT+M
Sbjct: 393 PVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 435



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 155/361 (42%), Gaps = 49/361 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   +N ++   C    + DA +L + M+         + D+++ GL  +G ++  L+++
Sbjct: 144 NSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVY 203

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +E            +P +     L++G C    VD+ ++L   M D+    + +      
Sbjct: 204 RE---------NRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVL 254

Query: 137 --LCKKTKLVEANRLL---ELMMQ----------RGLNPVIFTYTPLLNGYCLVGKVNVA 181
             LCK  ++ EA RL    EL             RG N VI        G C   +++ A
Sbjct: 255 DGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVIL-------GLCQNDRIDEA 307

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           + +F+ M  +   PD +SY +LI+G  K   + +A N+ ++++ +G            V 
Sbjct: 308 VQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSG------------VT 355

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P T      I GLC      +  ELF  +    C      +N +I   CK G+ E A +L
Sbjct: 356 PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDL 415

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             K+     V DVV YN ++  L K  ++++   L   ME  GC  +  + NT+++   Q
Sbjct: 416 IKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQ 475

Query: 362 K 362
           +
Sbjct: 476 Q 476



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 126/284 (44%), Gaps = 36/284 (12%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQ---------LVKKMA 51
           +S+V  AL+ F    R    P N  + N++I G C +  I  A Q         L+K+M 
Sbjct: 441 SSRVEEALLLFNEMERLGCTP-NRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMT 499

Query: 52  TFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC 111
             G  P+V T  TLI+GL     ++    L ++MV          KP V    +LI GLC
Sbjct: 500 DDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQ------CKPTVVTQNTLIHGLC 553

Query: 112 KDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIF 163
           K   + + +++   M   G     +  NTL+   C+  +   A  LL  M+ RGL P + 
Sbjct: 554 KAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVV 613

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           TYT L++G C   ++  A  +F  M   G  P++F+Y+ LI G+C    V          
Sbjct: 614 TYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQV---------- 663

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
             +G  K+F EM    + P+          LCK+G     +E+ 
Sbjct: 664 --DGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEIL 705



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 110/264 (41%), Gaps = 44/264 (16%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           ++V  A       ++R  +P   VT N+LI G C  G I++A +++  M + G  P+V T
Sbjct: 521 ARVDDARHLLEDMVKRQCKP-TVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT 579

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMV---------------------NGMGDFGGIYK--- 97
            +TL+ G  R G      +L  +MV                     N + +  G++    
Sbjct: 580 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 639

Query: 98  -----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLV 144
                PN+F Y +LI G C    VD    LF EM   GI+ + +        LCK  +  
Sbjct: 640 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSA 699

Query: 145 EANRLL----ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            A  +L    E +        ++ +   ++G    GK+ +A+     M R G +P     
Sbjct: 700 RALEILREGRESLRSEAWGDEVYRFA--VDGLLEAGKMEMALGFVRDMVRGGQLPAPERC 757

Query: 201 SVLINGYCKNFNVEEAMNVSREMI 224
           + L+ G CK+    EA  V  E++
Sbjct: 758 ASLVAGLCKSGQGGEARAVLEEIM 781



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 19/209 (9%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR-KGFMPDVFSYSVLINGYCKNF 211
           M Q+G+ P    +T ++ G+C VG+   A+ +F  M       PDV  Y+VLI+   K  
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDV--YNVLIDSLSKRQ 58

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
             E    + + M+  G              P++FT    + GLCK G + E   +   + 
Sbjct: 59  ETEAVKKMVQVMVDRG------------CFPDSFTFTTILCGLCKAGKMDEAELVMDEMR 106

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
                 +    + L    C  G  E A +L   +     VA+  AYNI++ AL K  ++ 
Sbjct: 107 SRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMP----VANSSAYNIVVVALCKAARVD 162

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFL 360
               L  +M E    L   + +++++  +
Sbjct: 163 DALELARTMSEKRIPLAAGSLDSVLVGLM 191


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 158/335 (47%), Gaps = 45/335 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+  F  EG IR A  +   +  +G RP+V + +TL+ G  + GN++
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLD 188

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L   M        G+ +P+V+ Y  LI+GLCK+                       
Sbjct: 189 EGFRLKNAM-----QASGV-QPDVYTYSVLINGLCKE----------------------- 219

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
               +K+ +AN L + M+  GL P   T+T L++G+C  G+V++A+ ++  M  +   PD
Sbjct: 220 ----SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CK  ++++A +++ EM + G K            P+  T    IDG CK
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK------------PDKITYTTLIDGSCK 323

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            GH+    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  
Sbjct: 324 EGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           Y ++I+   K+G +   + LL  M+ +G A  V T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYAPSVVT 418



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 162/365 (44%), Gaps = 27/365 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           A   F + +      ++D+  F+ LI  +   G +RDA +  +       R    TC  +
Sbjct: 48  ASAVFAAILETKGTQISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKV 107

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L +     L    ++E +         Y  +++ +  L+    K+  +   + +F  
Sbjct: 108 LEHLMKLKYFKLVWGFYEESLECG------YPASLYFFNILMHSFVKEGEIRLAQSVFDA 161

Query: 126 MKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           +   G+       NTL+    K   L E  RL   M   G+ P ++TY+ L+NG C   K
Sbjct: 162 ITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           ++ A  LFD M   G +P+  +++ LI+G+CKN  V+ AM + ++M+             
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ----------- 270

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
            ++ P+  T N  I GLCK G + +  +L   + +   +     + +LI G CK G  E 
Sbjct: 271 -SLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLET 329

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A E   ++  +N+  D VAY  LI  L +EG+      +L  M   G   ++ T+  ++ 
Sbjct: 330 AFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIIN 389

Query: 358 SFLQK 362
            F +K
Sbjct: 390 EFCKK 394



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 13/218 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + + + GL P + ++  L+NGY  +G ++    L ++M   G  PDV++YSVLIN
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G CK   +++A  +  EM+ NG            +VP   T    IDG CKNG V   ME
Sbjct: 215 GLCKESKMDDANELFDEMLDNG------------LVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           ++  +   +    +  +N+LI G CK G  + A +L +++S K L  D + Y  LI    
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSC 322

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           KEG ++        M +    LD D   T +IS L +E
Sbjct: 323 KEGHLETAFEYRKRMIKENIRLD-DVAYTALISGLCQE 359


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 179/371 (48%), Gaps = 37/371 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+NSL+   C EG + +A  + +KM   G RP+V + + +I G  + G+M+    + 
Sbjct: 432 NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVF 491

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM+       G+ KPN+  Y  L+DG  K    +    L+  M+ + I  +        
Sbjct: 492 VEMLEK-----GL-KPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIII 545

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  +  E+   L+ ++Q G  P   TY  +++G+   G VN A+A++  M + G  
Sbjct: 546 NGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVS 605

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKI 231
           P+VF+Y+ LING+CK+ N++ A+ V  EM              +++GF          ++
Sbjct: 606 PNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQL 665

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            +E++   + P     +  I G  K  ++   + L   +        ++I+ +LI G  K
Sbjct: 666 LSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLK 725

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    ASEL+ ++  K ++ D++ Y++LIH L  +GQ++    +L  M+       V  
Sbjct: 726 EGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFI 785

Query: 352 FNTLMISFLQK 362
           +NTL+    ++
Sbjct: 786 YNTLITGHFKE 796



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 152/316 (48%), Gaps = 26/316 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +D T N +I G C  G   ++   +KK+   G  P   T + +I G  + G++N  L ++
Sbjct: 537 SDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVY 596

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EM   +G       PNVF Y +LI+G CK   +D    +  EMK+KGI  +  +     
Sbjct: 597 TEMCK-IG-----VSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALI 650

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+K  +V A++LL  + + GL+P    Y+ +++G+  +  +  A+ L   M  +G  
Sbjct: 651 DGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIP 710

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D+  Y+ LI+G  K   +  A  +  EM+  G            ++P+  T ++ I GL
Sbjct: 711 CDLQIYTTLISGLLKEGKLLFASELYAEMLAKG------------IMPDLITYSVLIHGL 758

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G +    ++   ++       V I+N+LI G  K G  + A  L N++  K LV D 
Sbjct: 759 CNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDD 818

Query: 315 VAYNILIHALGKEGQI 330
             Y+IL++   K+G +
Sbjct: 819 TTYDILVNGKVKDGNL 834



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 163/371 (43%), Gaps = 30/371 (8%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T ++  A+  F S I +   P   V  N  +        IR+A  +  KMA+ G + +  
Sbjct: 167 TKRINDAVDCFNSLIEKDIVPCLTV-MNIFLSELVKNNMIREARDVYNKMASKGVKGDCA 225

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   +I    R G +       +E  N   +       +   Y  +I+ +CK        
Sbjct: 226 TISVMIRASMREGKLEEAEGWFREAKNKGVEL------DARAYSIVIEAVCKKPDSVAAL 279

Query: 121 DLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L  EM+DKG   + ++         K+ K++EA ++   M+  G    +   T L+ GY
Sbjct: 280 GLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGY 339

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  G ++ A+ LFD M   G  P+  +Y+V+I   CKN N+++A             +I+
Sbjct: 340 CKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAY------------EIY 387

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF-VEIFNSLIRGCCK 291
           N+MK  ++ P  F  N  I G  K     E  +LF   E   C +  V  +NSL+   CK
Sbjct: 388 NQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFD--EAVACGIANVFTYNSLLSWLCK 445

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A  ++ K+  K +   VV+YN +I    ++G +   N + + M E G   ++ T
Sbjct: 446 EGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLIT 505

Query: 352 FNTLMISFLQK 362
           ++ LM  + +K
Sbjct: 506 YSVLMDGYFKK 516



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 12/165 (7%)

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
           V   L +S  R  F  D   ++ L+N Y K   + +A++             FN +   +
Sbjct: 137 VVARLIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDC------------FNSLIEKD 184

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           +VP     NIF+  L KN  + E  +++  +     +      + +IR   + G  E A 
Sbjct: 185 IVPCLTVMNIFLSELVKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAE 244

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             F +   K +  D  AY+I+I A+ K+        LL  M + G
Sbjct: 245 GWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKG 289



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 108/279 (38%), Gaps = 64/279 (22%)

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            +L+E++R L+       +  +F Y  LLN Y    ++N A+  F+S+  K  +P +   
Sbjct: 139 ARLIESSRRLDFES----DSRVFNY--LLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVM 192

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKL 237
           ++ ++   KN  + EA +V  +M   G K                         F E K 
Sbjct: 193 NIFLSELVKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKN 252

Query: 238 CNVVPETFTCNIFIDGLC-----------------------------------KNGHVLE 262
             V  +    +I I+ +C                                   K G +LE
Sbjct: 253 KGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLE 312

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            +++   +      + V +  +L++G CK G  + A ELF+K++   +  + V Y ++I 
Sbjct: 313 AVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIE 372

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
              K G + K   +   M+    +  V   N+L+  +L+
Sbjct: 373 WCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLK 411


>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
 gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 164/340 (48%), Gaps = 30/340 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N  + G C  G + +A + ++ M   G  P V   +++I    R G      K ++ MV
Sbjct: 327 YNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMV 386

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLLC---- 138
                  G++  ++ C  SLI GL K   + + +DL  EM  +G+  N    TLL     
Sbjct: 387 KF-----GLFPSSLTC-SSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYF 440

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   +  A  L   M  RG++P    ++  +NG  +VG V+ A  +F  M++KGFMP+ F
Sbjct: 441 RMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNF 500

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            Y+ LI G+C +  ++EA+ + REM   G            ++P+ FT NI I+GLCK G
Sbjct: 501 VYNSLIRGFCNSGRLQEALMLEREMARKG------------LLPDIFTTNIIINGLCKEG 548

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS--ELFNKLSCKNLVADVVA 316
            +    ++F  +  +     +  +N+LI G CK   F+  S  E+ NK+       D+  
Sbjct: 549 RMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCK--AFDTVSTDEVVNKMYATGWDPDITT 606

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YNI +H L    ++ +   +L  +   G   D  T+NT+M
Sbjct: 607 YNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVM 646



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 148/345 (42%), Gaps = 50/345 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V FNS+I  +   G    A +  + M  FG  P+  TC +LI GL +   +     L  E
Sbjct: 360 VAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYE 419

Query: 85  MV---------------NG---MGDFGGIYK-----------PNVFCYGSLIDGLCKDRL 115
           M+               +G   MGD  G Y            P+   + + I+GL    L
Sbjct: 420 MIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGL 479

Query: 116 VDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           VD+  D+F++M  KG   N  +        C   +L EA  L   M ++GL P IFT   
Sbjct: 480 VDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNI 539

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           ++NG C  G++  A  +F +M   G +PD+ +Y+ LI+GYCK F+      V  +M   G
Sbjct: 540 IINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATG 599

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
           +             P+  T NI + GLC    +   + +   L  +        +N+++ 
Sbjct: 600 WD------------PDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMN 647

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           G C   + E A  +  KL     V +VV  N+L+    K+G  +K
Sbjct: 648 GVCT-DVLERAMIVTAKLLKMAFVPNVVTANLLLSHFCKQGMPEK 691



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 164/368 (44%), Gaps = 41/368 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF ++I  FC +GN+ +A  L   M   G  PNV   +TL+ G  +  ++     L++E
Sbjct: 220 VTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEE 279

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLC-------KDRLVDQTKDLFMEMKDKGINA-NTL 136
           M +          P+   +  L+ G         +DRL+               N   + 
Sbjct: 280 MKS------KAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSG 333

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC    L EA + LE M+++G+ P +  +  ++  Y   G    A   +  M + G  P 
Sbjct: 334 LCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPS 393

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
             + S LI G  K + ++EA ++  EMI+ G                          ++N
Sbjct: 394 SLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWN 453

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE--IFNSLIRGCCK 291
           EM+   + P+    + FI+GL   G V E  ++F  L++S         ++NSLIRG C 
Sbjct: 454 EMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVF--LQMSKKGFMPNNFVYNSLIRGFCN 511

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  + A  L  +++ K L+ D+   NI+I+ L KEG++K  + +  +M   G   D+ T
Sbjct: 512 SGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVT 571

Query: 352 FNTLMISF 359
           +NTL+  +
Sbjct: 572 YNTLIDGY 579



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 151/342 (44%), Gaps = 26/342 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            +N LI  +C  G   DA   ++ M   GC P++ T  T+I      GNM       + +
Sbjct: 186 AYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEA----RNL 241

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLC-- 138
            +GM + G I  PNV CY +L++G  K R + Q   L+ EMK K +       N L+   
Sbjct: 242 FDGMKEAGHI--PNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGH 299

Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            +  +  + +RLL  + Q G   +   Y   ++G C  G ++ A+   + M  KG  P V
Sbjct: 300 YRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTV 359

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +++ +I  Y +    E+A    R M+  G            + P + TC+  I GL K 
Sbjct: 360 VAFNSIIAAYSRAGLEEKAYKAYRMMVKFG------------LFPSSLTCSSLIMGLSKL 407

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             + E  +L   + +    +    F  L+ G  + G    A  L+N++  + +  D VA+
Sbjct: 408 WRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPDAVAF 467

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +  I+ L   G + +   + L M + G   +   +N+L+  F
Sbjct: 468 SAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGF 509



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 46/236 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+  +NSLI+GFC  G +++A  L ++MA  G  P++ T + +I GL + G M    K  
Sbjct: 498 NNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRM----KSA 553

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            ++   M   G I  P++  Y +LIDG                            CK   
Sbjct: 554 SDVFRNMHHTGLI--PDIVTYNTLIDG---------------------------YCKAFD 584

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
            V  + ++  M   G +P I TY   L+G C   K++ A+ + + +   G +PD  +Y+ 
Sbjct: 585 TVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNT 644

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           ++NG C +  +E AM V+ +++   F            VP   T N+ +   CK G
Sbjct: 645 VMNGVCTDV-LERAMIVTAKLLKMAF------------VPNVVTANLLLSHFCKQG 687



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 134/314 (42%), Gaps = 26/314 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            ++L++GF       +A ++V +M   G RP+ +    L   L R G+     KL + M+
Sbjct: 82  LDTLMRGFLKVEMGCEALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMI 141

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTLL----C 138
           +         +P    + ++I G C+   V   + L   M+       + A  +L    C
Sbjct: 142 HQGP------RPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYC 195

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
            + +  +A   +  M+  G  P + T+  ++N +C  G +  A  LFD M   G +P+V 
Sbjct: 196 TRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVV 255

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            Y+ L+NGY K  ++ +A              ++ EMK   V P+  T NI + G  + G
Sbjct: 256 CYNTLMNGYVKARDIGQA------------NMLYEEMKSKAVAPDCTTFNILVAGHYRYG 303

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              +   L   L  S       ++N  + G C  G  + A +    +  K +   VVA+N
Sbjct: 304 REEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFN 363

Query: 319 ILIHALGKEGQIKK 332
            +I A  + G  +K
Sbjct: 364 SIIAAYSRAGLEEK 377



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 141/348 (40%), Gaps = 48/348 (13%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I +  RP N   FN++I GFC +G+++    L+  M  F C+P+V   + LI      G 
Sbjct: 141 IHQGPRPCNR-NFNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQ 199

Query: 75  MNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
               L   + M+ NG         P++  +G++I+  C                      
Sbjct: 200 TFDALGWMRFMIDNGC-------TPSLVTFGTVINAFCN--------------------- 231

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                 +  ++EA  L + M + G  P +  Y  L+NGY     +  A  L++ M  K  
Sbjct: 232 ------QGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAV 285

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD  ++++L+ G+ + +  EE  +           ++  ++     +  +   NI + G
Sbjct: 286 APDCTTFNILVAGHYR-YGREEDRD-----------RLLRDLSQSGSLSISSLYNICVSG 333

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LC  G + E M+    +        V  FNS+I    + G+ E A + +  +    L   
Sbjct: 334 LCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPS 393

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            +  + LI  L K  ++++   LL  M   G  ++   F  L+  + +
Sbjct: 394 SLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFR 441



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 12/212 (5%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           EA  ++  M + GL P     T L      +G       L   M  +G  P   +++ +I
Sbjct: 97  EALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVI 156

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
            G+C+  +V+  +  S   ++  FK        C   P+ +  NI I+  C  G   + +
Sbjct: 157 LGFCRKGHVK--VGESLLCVMQKFK--------CQ--PDVYAYNILINAYCTRGQTFDAL 204

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                +  + C   +  F ++I   C  G    A  LF+ +     + +VV YN L++  
Sbjct: 205 GWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGY 264

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            K   I + N L   M+    A D  TFN L+
Sbjct: 265 VKARDIGQANMLYEEMKSKAVAPDCTTFNILV 296


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 168/368 (45%), Gaps = 36/368 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLIKG+C    I DA +L+  + + GC P+  +  T++  L +   +     L ++
Sbjct: 306 VTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEK 365

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV     +     P+   Y +LI  L K    D       E +DKG + + +        
Sbjct: 366 MV-----WNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHS 420

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+K ++ EA  L+  M  RG NP + TYT +++G+C +G+++ A  +   M + G  P+
Sbjct: 421 FCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPN 480

Query: 197 VFSYSVLINGYC---KNFNVEEAMNVSRE-----------MILNGFKKIFNEMKLCNVV- 241
             SY+ L+NG C   K+    E +NVS E            +++G ++     + C++  
Sbjct: 481 TVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTR 540

Query: 242 --------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P     N+ I  LC+N  V+E  +         C + V  F ++I G C+ G
Sbjct: 541 EMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIG 600

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A  + + +       D V Y  L  ALGK+G++ +   L++ M   G      T+ 
Sbjct: 601 DMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYR 660

Query: 354 TLMISFLQ 361
           +++  + Q
Sbjct: 661 SVIHRYSQ 668



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 151/312 (48%), Gaps = 28/312 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +++ GFC  G I +A +++++M   GC+PN  +   L+ GL  +G    +L+  +E
Sbjct: 447 VTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGK---SLEA-RE 502

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M+N   +    + PN   YG+++ GL ++  + +  DL  EM +KG     +  N L   
Sbjct: 503 MINVSEEHW--WTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQS 560

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+  K+VEA + LE  + +G    +  +T +++G+C +G +  A+++ D M   G  PD
Sbjct: 561 LCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPD 620

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ L +   K   ++EA  +  +M+  G              P   T    I    +
Sbjct: 621 AVTYTALFDALGKKGRLDEAAELIVKMLSKGLD------------PTPVTYRSVIHRYSQ 668

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V +++ L    ++   + F  ++N +I   C FG  E A +L  K+       D   
Sbjct: 669 WGRVDDMLNLLE--KMLKRQPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANT 726

Query: 317 YNILIHALGKEG 328
            ++L+ +  K+G
Sbjct: 727 CHVLMESYLKKG 738



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 149/348 (42%), Gaps = 29/348 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            F  ++  +   G +R+A +++  M   G  P+++ C+T I  L + G +   LK  + M
Sbjct: 237 AFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERM 296

Query: 86  -VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            V G+       KP++  Y SLI G C    ++   +L   +  KG   + +        
Sbjct: 297 QVTGI-------KPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGF 349

Query: 137 LCKKTKLVEANRLLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
           LCK+ K+ E   L+E M+    L P   TY  L++     G  + A+A       KGF  
Sbjct: 350 LCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHI 409

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D   YS +++ +C+   ++EA ++  +M   G          CN  P+  T    +DG C
Sbjct: 410 DKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRG----------CN--PDVVTYTAIVDGFC 457

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           + G + E  ++   +    C+     + +L+ G C  G    A E+ N         + +
Sbjct: 458 RLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAI 517

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            Y  ++H L +EG++ +   L   M E G        N L+ S  Q +
Sbjct: 518 TYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQ 565



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 18/227 (7%)

Query: 140 KTKLVE-ANRLLELMMQRGLN--PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           KTKL + A R+L LM +RG+   P  F Y  ++  Y   GK+  A+ +   M + G  P 
Sbjct: 212 KTKLCQGARRVLRLMTRRGIECPPEAFGY--VMVSYSRAGKLRNALRVLTLMQKAGVEPS 269

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           +   +  I    K   +E+A+            K    M++  + P+  T N  I G C 
Sbjct: 270 LSICNTTIYVLVKGGKLEKAL------------KFLERMQVTGIKPDIVTYNSLIKGYCD 317

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC-KNLVADVV 315
              + + +EL   L    C      + +++   CK    E    L  K+    NL+ D V
Sbjct: 318 LNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQV 377

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            YN LIH L K G        L   ++ G  +D   ++ ++ SF QK
Sbjct: 378 TYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQK 424


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 161/343 (46%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N++++  C  G ++ A +++ +     C P+V T   LI    +   +   +KL  E
Sbjct: 160 VTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDE 219

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M N         KP+V  Y  LI+G+CK+  +D+       M   G   N +        
Sbjct: 220 MRNKGS------KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRS 273

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C   + ++A +LL  M+++G +P + T+  L+N  C  G +  AI + + M   G  P+
Sbjct: 274 MCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPN 333

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY+ L++G+CK   ++ A+     M+  G              P+  T N  +  LCK
Sbjct: 334 SLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG------------CYPDIVTYNTLLTALCK 381

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V   +E+   L    C   +  +N++I G  K G  E A +L +++  K L  D++ 
Sbjct: 382 DGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIIT 441

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y+ L+  L +EG++ +       +E  G   +  T+N++M+  
Sbjct: 442 YSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 484



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 162/347 (46%), Gaps = 30/347 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N LI G+C  G I +A Q++ +M      P+V T +T++  L  +G      KL Q 
Sbjct: 128 ITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSG------KLKQA 178

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M            P+V  Y  LI+  CK+  V Q   L  EM++KG   + +        
Sbjct: 179 MEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLING 238

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +CK+ +L EA + L  M   G  P + T+  +L   C  G+   A  L   M RKG  P 
Sbjct: 239 ICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPS 298

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V ++++LIN  C+   +  A+++  +M ++G              P + + N  + G CK
Sbjct: 299 VVTFNILINFLCRQGLLGRAIDILEKMPMHG------------CTPNSLSYNPLLHGFCK 346

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              +   +E    +    C   +  +N+L+   CK G  ++A E+ N+LS K     ++ 
Sbjct: 347 EKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLIT 406

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           YN +I  L K G+ ++   LL  M   G   D+ T+++L +S L +E
Sbjct: 407 YNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSL-VSGLSRE 452



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 145/327 (44%), Gaps = 23/327 (7%)

Query: 38  GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97
           G + D  + ++ M   G  P++  C +LI G  R G      K    ++  +   G +  
Sbjct: 71  GELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKT----KKATWVMEILEQSGAV-- 124

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTLL---CKKTKLVEANRLLEL 152
           P+V  Y  LI G CK   +D    +   M +    +  NT+L   C   KL +A  +L+ 
Sbjct: 125 PDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDR 184

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
            +Q+   P + TYT L+   C    V  A+ L D M  KG  PDV +Y+VLING CK   
Sbjct: 185 QLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGR 244

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           ++EA+            K  N M      P   T NI +  +C  G  ++  +L   +  
Sbjct: 245 LDEAI------------KFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLR 292

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
             C   V  FN LI   C+ G+   A ++  K+       + ++YN L+H   KE ++ +
Sbjct: 293 KGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR 352

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
               L  M   GC  D+ T+NTL+ + 
Sbjct: 353 AIEYLDIMVSRGCYPDIVTYNTLLTAL 379



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 150/321 (46%), Gaps = 26/321 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N LI G C EG + +A + +  M ++GC+PNV T + ++  +  TG      KL  +
Sbjct: 230 VTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSD 289

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+           P+V  +  LI+ LC+  L+ +  D+  +M   G   N+L        
Sbjct: 290 MLRKG------CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHG 343

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+  A   L++M+ RG  P I TY  LL   C  GKV+VA+ + + ++ KG  P 
Sbjct: 344 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 403

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ +I+G  K    E A+            K+ +EM+   + P+  T +  + GL +
Sbjct: 404 LITYNTVIDGLSKVGKTERAI------------KLLDEMRRKGLKPDIITYSSLVSGLSR 451

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V E ++ F  LE          +NS++ G CK    + A +    +  K        
Sbjct: 452 EGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEAT 511

Query: 317 YNILIHALGKEGQIKKENYLL 337
           Y ILI  +  EG  K+   LL
Sbjct: 512 YTILIEGIAYEGLAKEALDLL 532



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 145/308 (47%), Gaps = 28/308 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T N +++  C  G   DA +L+  M   GC P+V T + LI  L R G +   + + 
Sbjct: 263 NVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDIL 322

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           ++M ++G         PN   Y  L+ G CK++ +D+  +    M  +G     +  NTL
Sbjct: 323 EKMPMHGC-------TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTL 375

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   CK  K+  A  +L  +  +G +PV+ TY  +++G   VGK   AI L D M RKG 
Sbjct: 376 LTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL 435

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ +YS L++G  +   V+EA+            K F++++   + P   T N  + G
Sbjct: 436 KPDIITYSSLVSGLSREGKVDEAI------------KFFHDLEGLGIRPNAITYNSIMLG 483

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK+      ++    +    C+     +  LI G    G+ + A +L N+L  + LV  
Sbjct: 484 LCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKK 543

Query: 314 VVAYNILI 321
             A  + +
Sbjct: 544 SSAEQVAV 551



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 159/350 (45%), Gaps = 30/350 (8%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           + CY  +  +T+  LI+  C E  +  A +L+ +M   G +P+V T + LI G+ + G +
Sbjct: 188 KECYPDV--ITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRL 245

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINAN 134
           +  +K     +N M  +G   +PNV  +  ++  +C   R +D  K L  +M  KG + +
Sbjct: 246 DEAIKF----LNNMPSYG--CQPNVITHNIILRSMCSTGRWMDAEK-LLSDMLRKGCSPS 298

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +        LC++  L  A  +LE M   G  P   +Y PLL+G+C   K++ AI   D
Sbjct: 299 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLD 358

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M  +G  PD+ +Y+ L+   CK+  V+ A+            +I N++      P   T
Sbjct: 359 IMVSRGCYPDIVTYNTLLTALCKDGKVDVAV------------EILNQLSSKGCSPVLIT 406

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  IDGL K G     ++L   +     +  +  ++SL+ G  + G  + A + F+ L 
Sbjct: 407 YNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLE 466

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +  + + YN ++  L K  Q  +    L  M    C     T+  L+
Sbjct: 467 GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILI 516


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 165/346 (47%), Gaps = 46/346 (13%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F S +     P N  T+N L++  C  G+ ++A  +++ M   GC PNV T +TL+    
Sbjct: 178 FDSMLSDGVAP-NVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFF 236

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R G ++       E + GM   GG+ KPN+  + S+++G+C                   
Sbjct: 237 RAGEVD-----GAERLVGMMREGGL-KPNLVTFNSMVNGMC------------------- 271

Query: 131 INANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                   K  K+ +A ++ + M++ GL P   +Y  L+ GYC  G  + A+++F  M +
Sbjct: 272 --------KAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQ 323

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           KG MPDV +++ LI+  CK  N+E A+ + R+M   G +   NE+        TFT    
Sbjct: 324 KGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQ--MNEV--------TFTA--L 371

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           IDG CK G + + +     ++    +  V  +N+LI G C  G  + A EL +++  K L
Sbjct: 372 IDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGL 431

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             DVV Y+ +I A  K         L   M E G   D  T+++L+
Sbjct: 432 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLI 477



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 162/355 (45%), Gaps = 49/355 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+L+  F   G +  A +LV  M   G +PN+ T ++++ G+ + G M    K+ 
Sbjct: 224 NVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 283

Query: 83  QEMVN-GMGDFGGIYK----------------------------PNVFCYGSLIDGLCKD 113
            EMV  G+   G  Y                             P+V  + SLI  +CK 
Sbjct: 284 DEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 343

Query: 114 RLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             +++   L  +M+++G+  N +         CKK  L +A   +  M Q  + P +  Y
Sbjct: 344 GNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCY 403

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L+NGYC+VG+++ A  L   M  KG  PDV +YS +I+ YCKN +   A  ++++M+ 
Sbjct: 404 NALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLE 463

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
            G            V+P+  T +  I  LC    + +   LF  +     +     + SL
Sbjct: 464 KG------------VLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSL 511

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
           I G CK G  E A  L +K+    ++ DVV Y++LI+ L K  +  +   LL  +
Sbjct: 512 IDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 566



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 152/322 (47%), Gaps = 52/322 (16%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N+VTF +LI GFC +G + DA   V+ M     +P+V   + LI G    G M+   +L
Sbjct: 363 MNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEAREL 422

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EM     +  G+ KP+V  Y ++I   CK+       +L  +M +KG+  + +     
Sbjct: 423 LHEM-----EAKGL-KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSL 476

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC + +L +A+ L + M++ GL P  FTYT L++G+C  G V  A++L D M + G 
Sbjct: 477 IRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGV 536

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PDV +YSVLING  K+    EA  +          K+++E        +    N   D 
Sbjct: 537 LPDVVTYSVLINGLSKSARAMEAQQL--------LFKLYHE--------DPIPANTKYDA 580

Query: 254 L---CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           L   C+   +  V+                   +L++G C  G+   A +++  +  +N 
Sbjct: 581 LMHCCRKAELKSVL-------------------ALLKGFCMKGLMNEADKVYQSMLDRNW 621

Query: 311 VADVVAYNILIHALGKEGQIKK 332
             D   Y++LIH   + G + K
Sbjct: 622 NLDGSVYSVLIHGHCRAGNVMK 643



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 126/270 (46%), Gaps = 20/270 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLC---KKTKLVEANRL 149
           PNV+ Y  L+  LC      +   +  +M+  G     +  NTL+    +  ++  A RL
Sbjct: 188 PNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERL 247

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           + +M + GL P + T+  ++NG C  GK+  A  +FD M R+G  PD  SY+ L+ GYCK
Sbjct: 248 VGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCK 307

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                EA++V            F EM    ++P+  T    I  +CK G++   + L   
Sbjct: 308 AGCSHEALSV------------FAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQ 355

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     ++    F +LI G CK G  + A      +    +   VV YN LI+     G+
Sbjct: 356 MRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGR 415

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + +   LL  ME  G   DV T++T++ ++
Sbjct: 416 MDEARELLHEMEAKGLKPDVVTYSTIISAY 445



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 12/231 (5%)

Query: 132 NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           NA  L      L  A R  + M+  G+ P ++TY  L+   C  G    A+++   M   
Sbjct: 160 NAVLLALSDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGA 219

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+V +Y+ L+  +   F   E         ++G +++   M+   + P   T N  +
Sbjct: 220 GCGPNVVTYNTLVAAF---FRAGE---------VDGAERLVGMMREGGLKPNLVTFNSMV 267

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +G+CK G + +  ++F  +           +N+L+ G CK G    A  +F +++ K ++
Sbjct: 268 NGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIM 327

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            DVV +  LIH + K G +++   L+  M E G  ++  TF  L+  F +K
Sbjct: 328 PDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKK 378



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 48/200 (24%)

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G++P V +Y+ ++        + +A        L   ++ F+ M    V P  +T NI +
Sbjct: 151 GYVPSVLAYNAVL------LALSDAS-------LTSARRFFDSMLSDGVAPNVYTYNILV 197

Query: 252 DGLCKNGHVLEVMEL-----------------------FPTLEISNCELFVEI------- 281
             LC  GH  E + +                       F   E+   E  V +       
Sbjct: 198 RALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLK 257

Query: 282 -----FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
                FNS++ G CK G  E A ++F+++  + L  D V+YN L+    K G   +   +
Sbjct: 258 PNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSV 317

Query: 337 LLSMEENGCALDVDTFNTLM 356
              M + G   DV TF +L+
Sbjct: 318 FAEMTQKGIMPDVVTFTSLI 337


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 169/381 (44%), Gaps = 38/381 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   +     P N +T+N++I G    G++    +L  +M   G +PN+ T + L+
Sbjct: 35  ALKVFDEMVDMGVVP-NWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLL 93

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +GL R G M+ T  L  EM +          P+ F Y  L DGL +         LF E 
Sbjct: 94  SGLCRAGRMDETRVLMDEMASHS------MFPDGFTYSILFDGLTRTGESRTMLSLFAES 147

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             KG+             LCK  K+ +A ++LE+++  GL P    Y  L+NGYC V  +
Sbjct: 148 LKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDL 207

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------- 230
             A  +F+ M  +   PD  +Y+ LING CK   V +A ++  EM  +G           
Sbjct: 208 RGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 267

Query: 231 ---------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                          + ++M+   +  +  +    +   CKNG + E + +   +   + 
Sbjct: 268 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 327

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
               +++NS+I    + G  E A  L  K+    + A +V YN+L+  L +  QI +   
Sbjct: 328 APNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE 387

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           L+ ++   G   DV ++NT++
Sbjct: 388 LIYTLRNQGLRPDVVSYNTII 408



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 169/361 (46%), Gaps = 31/361 (8%)

Query: 14  FIRRCYR-----PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
            +RR  R     P +  ++N +I G    G   DA ++  +M   G  PN  T +T+I G
Sbjct: 1   MVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDG 60

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
             + G++    +L  +M++         KPN+  Y  L+ GLC+   +D+T+ L  EM  
Sbjct: 61  HVKGGDLEAGFRLRDQMLHDGP------KPNIVTYNVLLSGLCRAGRMDETRVLMDEMAS 114

Query: 129 K-----GINANTLLCKKTKLVEANRLLELM---MQRGLNPVIFTYTPLLNGYCLVGKVNV 180
                 G   + L    T+  E+  +L L    +++G+    +T + LLNG C  GKV  
Sbjct: 115 HSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAK 174

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A  + + +   G +P    Y+ LINGYC+  +            L G   IF +MK  ++
Sbjct: 175 AEQVLEMLVHTGLVPTTVIYNTLINGYCQVRD------------LRGAFCIFEQMKSRHI 222

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T N  I+GLCK   V +  +L   +E S  +  VE FN+LI      G  E    
Sbjct: 223 RPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFT 282

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           + + +  K + +DV+++  ++ A  K G+I +   +L  M     A +   +N+++ +++
Sbjct: 283 VLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI 342

Query: 361 Q 361
           +
Sbjct: 343 E 343



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 149/350 (42%), Gaps = 37/350 (10%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           L+ G C +G +  A Q+++ +   G  P     +TLI G  +  ++     + ++M +  
Sbjct: 162 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 221

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---CKKT 141
                  +P+   Y +LI+GLCK  +V + +DL MEM+  G++      NTL+       
Sbjct: 222 ------IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAG 275

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           +L +   +L  M Q+G+   + ++  ++  +C  GK+  A+A+ D M  K   P+   Y+
Sbjct: 276 QLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYN 335

Query: 202 VLINGYCKNFNVEEAM--------------NVSREMILNGF---------KKIFNEMKLC 238
            +I+ Y ++ + E+A                V+  ++L G          +++   ++  
Sbjct: 336 SIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQ 395

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            + P+  + N  I   C  G   + +EL   +        +  +++L+      G     
Sbjct: 396 GLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDM 455

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             L+ ++  KN+      Y I++ A  +     K   L   M E G A D
Sbjct: 456 ECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 505



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 115/288 (39%), Gaps = 50/288 (17%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GA   F     R  RP + +T+N+LI G C    +  A  LV +M   G  P+V T +TL
Sbjct: 209 GAFCIFEQMKSRHIRP-DHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 267

Query: 66  ITGLRRTGNMNLTLKLHQEMV-----NGMGDFGGIYK----------------------- 97
           I      G +     +  +M      + +  FG + K                       
Sbjct: 268 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 327

Query: 98  -PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
            PN   Y S+ID   +    +Q   L  +MK+ G++A+ +        LC+ +++ EA  
Sbjct: 328 APNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE 387

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L+  +  +GL P + +Y  +++  C  G  + A+ L   M + G  P + +Y  L++   
Sbjct: 388 LIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALA 447

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
               V +             + ++ +M   NV P +    I +D   +
Sbjct: 448 SAGRVHD------------MECLYQQMLHKNVEPSSSIYGIMVDAYVR 483


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 163/356 (45%), Gaps = 32/356 (8%)

Query: 5   LGALMAFGSF--IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           L +  AF  F  I R   PL   TFN +++  C  G    A +L+++M     RPN  T 
Sbjct: 95  LPSAPAFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMP----RPNAVTY 150

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +T+I G    G +   L++ +EM     + GGI  P+ + Y +LI G CK   ++    +
Sbjct: 151 NTVIAGFCARGRVQAALEVMREM----RERGGI-APDKYTYATLISGWCKIGRMEDAAKV 205

Query: 123 FMEMKDKGINANTLL---------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           F EM  +G  A + +         C + KL  A +  E M+QRG+   + TY  L++   
Sbjct: 206 FDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALF 265

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
           + G+ + A A+ + M R G  PDVF+Y++LINGYCK  N ++A+ V            F 
Sbjct: 266 MDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEV------------FE 313

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM    V     T    I    + G V E   LF           V ++N+LI   C  G
Sbjct: 314 EMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGG 373

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
             E A E+  ++  K +  D V YN LI      G++ +   L+  M + G   D+
Sbjct: 374 DMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDL 429



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 96/227 (42%), Gaps = 16/227 (7%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM-ARKGFMP 195
           LC   K V A  LL  M +    P   TY  ++ G+C  G+V  A+ +   M  R G  P
Sbjct: 126 LCATGKPVRALELLRQMPR----PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAP 181

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D ++Y+ LI+G+CK   +E+A  V  EM+  G            V P     N  I G C
Sbjct: 182 DKYTYATLISGWCKIGRMEDAAKVFDEMLTQG-----------EVAPSAVMYNALIGGYC 230

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
             G +   ++    +      + V  +N L+      G    A  +  ++    L  DV 
Sbjct: 231 DRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVF 290

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            YNILI+   KEG  KK   +   M   G      T+ +L+ +F +K
Sbjct: 291 TYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRK 337



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 114/266 (42%), Gaps = 55/266 (20%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +N+LI G+C  G +  A Q  + M   G    V T + L+  L   G  +    + +E
Sbjct: 220 VMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEE 279

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           M  NG+        P+VF Y  LI+G CK+    +  ++F EM  KG+ A  +       
Sbjct: 280 MQRNGL-------SPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIY 332

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
              +K ++ E +RL ++ +++G+ P +  Y  L+N +C  G +  A  +   M +K   P
Sbjct: 333 AFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPP 392

Query: 196 DVFSYSVLINGYC---------------------------KNFNVEEAMNVSREMILNGF 228
           D  +Y+ LI G+C                           KN   ++A N+ +EM+  G 
Sbjct: 393 DDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDLGLCKNGQGDDAENLMKEMVGKG- 451

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGL 254
                      + P+  T    I+GL
Sbjct: 452 -----------ITPDDSTYISLIEGL 466



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 22/197 (11%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           T+  +L   C  GK   A+ L   M R    P+  +Y+ +I G+C    V+ A+ V REM
Sbjct: 118 TFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIAGFCARGRVQAALEVMREM 173

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL----EISNCELFV 279
              G            + P+ +T    I G CK G + +  ++F  +    E++   +  
Sbjct: 174 RERG-----------GIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAV-- 220

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            ++N+LI G C  G  ++A +    +  + +   V  YN+L+HAL  +G+      +L  
Sbjct: 221 -MYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEE 279

Query: 340 MEENGCALDVDTFNTLM 356
           M+ NG + DV T+N L+
Sbjct: 280 MQRNGLSPDVFTYNILI 296



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 25/203 (12%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N LI G+C EGN + A ++ ++M+  G R    T  +LI    R G +  T +L +  
Sbjct: 291 TYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVA 350

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
           V       GI +P+V  Y +LI+  C    +++  ++  EM+ K I       NTL+   
Sbjct: 351 VKK-----GI-RPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGF 404

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +L EA  L++ M +RG+ P +        G C  G+ + A  L   M  KG  PD 
Sbjct: 405 CLLGRLDEARGLIDEMTKRGIQPDL--------GLCKNGQGDDAENLMKEMVGKGITPDD 456

Query: 198 FSYSVLINGYCKNFNVEEAMNVS 220
            +Y  LI G      V+E M+ +
Sbjct: 457 STYISLIEGLT---TVDEQMSAA 476



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 7/169 (4%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F    R+  R    VT+ SLI  F  +G +++  +L K     G RP+V   + LI
Sbjct: 308 ALEVFEEMSRKGVR-ATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALI 366

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
                 G+M    ++  EM            P+   Y +LI G C    +D+ + L  EM
Sbjct: 367 NSHCAGGDMERAFEIMAEMEKKR------IPPDDVTYNTLIRGFCLLGRLDEARGLIDEM 420

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
             +GI  +  LCK  +  +A  L++ M+ +G+ P   TY  L+ G   V
Sbjct: 421 TKRGIQPDLGLCKNGQGDDAENLMKEMVGKGITPDDSTYISLIEGLTTV 469


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 171/349 (48%), Gaps = 28/349 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V++ +LI GFC  G I +A +L  +M   GC P+V T   L+      G     LK  
Sbjct: 259 NEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFF 318

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           +EMV NG+       +PNV+ Y  LID  CK   +D+  ++   M +KG+ ++ +     
Sbjct: 319 EEMVENGI-------EPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNAL 371

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               CK+  + +A  +L+ M    + P   TY  L+ G+C    ++ A+AL + M     
Sbjct: 372 IDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKL 431

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P++ +Y+ LI+G CK   V+ A  +   MI +GF            VP+  T   FID 
Sbjct: 432 SPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGF------------VPDQRTFCAFIDC 479

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G V +  ++F +L+  + E    ++ +LI G CK   F  A  LF ++  +    +
Sbjct: 480 LCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPN 539

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            + +N+L+  L KEG+++    L+  M +      V T+  L+   L++
Sbjct: 540 SITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRE 588



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 168/383 (43%), Gaps = 31/383 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  A   F S ++  +   N+  + +LI G+C      DA  L K+M   GC PN  T 
Sbjct: 485 KVEQAHQVFES-LKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITF 543

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + L+ GLR+ G +   + L    V+ MG F    KP V  Y  LI+ + ++   D+    
Sbjct: 544 NVLLDGLRKEGKVEDAMSL----VDVMGKFDA--KPTVHTYTILIEEILRESDFDRANMF 597

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             +M   G   N +         C++ +L+EA  ++  + + G+    F Y  L+N Y  
Sbjct: 598 LDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGC 657

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLING-----YCK----------NFNVEEAMNV 219
           +G+++ A  +   M   G  P   +YS+L+       Y K          N +V+ A N+
Sbjct: 658 IGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNA-NI 716

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
            +         +F +M     VP   T +  I GLCK  H+     LF  ++ S      
Sbjct: 717 WKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSE 776

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            I NSL+  CCK G+ E A  L + +   N +A + +Y +L+  L ++G  +K   +  S
Sbjct: 777 NIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRS 836

Query: 340 MEENGCALDVDTFNTLMISFLQK 362
           +   G   D   +  L+   ++K
Sbjct: 837 LLSCGYNYDEVVWKVLLDGLVRK 859



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 161/349 (46%), Gaps = 26/349 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N ++FN+++   C  GN+  A      +  FG   +  T  +LI G  +   +    K+ 
Sbjct: 189 NLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVF 248

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----INANTLL- 137
           + M        G  + N   Y +LI G C+   +D+  +LF +MK+ G    +   T+L 
Sbjct: 249 EIMPQE-----GCLR-NEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLV 302

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+  K  EA +  E M++ G+ P ++TYT L++ +C VGK++  + +  +M  KG +
Sbjct: 303 AAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLV 362

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
             V  ++ LI+GYCK   +E+A+ V             + MKL  V P + T N  I G 
Sbjct: 363 SSVVPFNALIDGYCKRGMMEDAICV------------LDSMKLNKVCPNSRTYNELICGF 410

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+   +   M L   +  +     +  +N+LI G CK  + + A  L + +     V D 
Sbjct: 411 CRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQ 470

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             +   I  L K G++++ + +  S++E     +   +  L+  + + E
Sbjct: 471 RTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAE 519



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 154/339 (45%), Gaps = 26/339 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+  ++N L       G I + + L K M   G  PN+ + +T++    + GN+ +    
Sbjct: 153 LSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVA--- 209

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +    G+  FG  +  + F Y SLI G CK   +     +F  M  +G   N +     
Sbjct: 210 -KAYFCGLMKFG--FCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNL 266

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C+  K+ EA  L   M + G  P + TYT L+  +C VGK   A+  F+ M   G 
Sbjct: 267 IHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGI 326

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V++Y+VLI+ +CK   ++E M +   M+  G         + +VVP     N  IDG
Sbjct: 327 EPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGL--------VSSVVP----FNALIDG 374

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK G + + + +  +++++        +N LI G C+    + A  L NK+    L  +
Sbjct: 375 YCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPN 434

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           +V YN LIH L K   +     L   M ++G   D  TF
Sbjct: 435 LVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTF 473



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 23/242 (9%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           E N L + M+  G+ P + ++  ++N +C +G V VA A F  + + GF  D F+Y+ LI
Sbjct: 173 ELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLI 232

Query: 205 NGYCK------NFNVEEAM--------NVSREMILNGFKKI---------FNEMKLCNVV 241
            GYCK       + V E M         VS   +++GF ++         F +MK     
Sbjct: 233 LGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCF 292

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+  T  + +   C+ G   E ++ F  +  +  E  V  +  LI   CK G  +   E+
Sbjct: 293 PDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEM 352

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            + +  K LV+ VV +N LI    K G ++    +L SM+ N    +  T+N L+  F +
Sbjct: 353 LSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCR 412

Query: 362 KE 363
           K+
Sbjct: 413 KK 414



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 12/215 (5%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           EA  +L L+     +  + +Y  L       G ++    LF  M   G  P++ S++ ++
Sbjct: 138 EARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMV 197

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           N +CK  NV  A            K  F  +       ++FT    I G CK   + +  
Sbjct: 198 NAHCKIGNVVVA------------KAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAY 245

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           ++F  +    C      + +LI G C+ G  + A ELF ++       DV  Y +L+ A 
Sbjct: 246 KVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAF 305

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + G+  +       M ENG   +V T+  L+  F
Sbjct: 306 CEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYF 340


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 170/366 (46%), Gaps = 38/366 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCR-PNVTTCDTLITGLRRTGNMNLTLKL 81
           N VT+  LIKG+C +  + +A ++++ M       P+      LI G  RTG ++  ++L
Sbjct: 261 NVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRL 320

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL 136
             EM+  +G      K N+F   SLI+G CK   + + + +   M D  +       NTL
Sbjct: 321 LDEMLR-LG-----LKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 374

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   C++    EA  L + M+Q G+ P + TY  LL G C VG  + A+ ++  M ++G 
Sbjct: 375 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGV 434

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK----------------------- 230
            PD   YS L++G  K  N E A  + ++++  GF K                       
Sbjct: 435 APDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEE 494

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           IF++MK     P+  T    IDG CK  +V +  ++   +E       +E++NSLI G  
Sbjct: 495 IFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLF 554

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K       ++L  ++  + L  ++V Y  LI    KEG + K       M ENG + ++ 
Sbjct: 555 KSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANII 614

Query: 351 TFNTLM 356
             +T++
Sbjct: 615 ICSTMV 620



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 33/342 (9%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           ++  FC +G + +A+  VKKM   G  PN+ T  +LI G    G++        E   G+
Sbjct: 198 MVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDV--------EAAKGV 249

Query: 90  GDF---GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLL---- 137
             F    G+ + NV  Y  LI G CK   +D+ + +   M+++        A  +L    
Sbjct: 250 LKFMSEKGVSR-NVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGY 308

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+  K+ +A RLL+ M++ GL   +F    L+NGYC  G+++ A  +   M      PD 
Sbjct: 309 CRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDS 368

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           +SY+ L++GYC+  +  EA N+  +M+  G +            P   T N  + GLC+ 
Sbjct: 369 YSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE------------PTVLTYNTLLKGLCRV 416

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G   + ++++  +           +++L+ G  K   FE AS L+  +  +      + +
Sbjct: 417 GAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITF 476

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N +I  L K G++ +   +   M++ GC+ D  T+ TL+  +
Sbjct: 477 NTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGY 518



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 171/374 (45%), Gaps = 51/374 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ ++K +  +G  ++A  +   M   G  P++ +C++L+  L + G  +    ++Q+M+
Sbjct: 125 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 184

Query: 87  N---------------------GMGDFGGIYK--------PNVFCYGSLIDGLCKDRLVD 117
                                  + +  G  K        PN+  Y SLI+G      V+
Sbjct: 185 RVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVE 244

Query: 118 QTKDLFMEMKDKGINAN----TLL----CKKTKLVEANRLLELMMQR-GLNPVIFTYTPL 168
             K +   M +KG++ N    TLL    CK+ K+ EA ++L  M +   L P    Y  L
Sbjct: 245 AAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVL 304

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           ++GYC  GK++ A+ L D M R G   ++F  + LINGYCK   + EA  V   M+    
Sbjct: 305 IDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMV---- 360

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                     N+ P++++ N  +DG C+ GH  E   L   +     E  V  +N+L++G
Sbjct: 361 --------DWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKG 412

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C+ G F+ A ++++ +  + +  D V Y+ L+  L K    +  + L   +   G    
Sbjct: 413 LCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKS 472

Query: 349 VDTFNTLMISFLQK 362
             TFNT MIS L K
Sbjct: 473 RITFNT-MISGLCK 485



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 156/364 (42%), Gaps = 56/364 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ- 83
           +TFN++I G C  G + +A ++  KM   GC P+  T  TLI G  +  N+    K+   
Sbjct: 474 ITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 533

Query: 84  ----------EMVNGMGDFGGIYK--------------------PNVFCYGSLIDGLCKD 113
                     EM N +    G++K                    PN+  YG+LIDG CK+
Sbjct: 534 MEREPISPSIEMYNSL--ISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKE 591

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKT--------KLVEANRLLELMMQRGLNPVIFTY 165
            ++D+    + EM + G++AN ++C           ++ EAN L++ M+  G  P    +
Sbjct: 592 GMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF 651

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
                 Y  + K+  ++   D   +   +P+   Y++ I G CK   V++A         
Sbjct: 652 LKSDIRYAAIQKIADSL---DESCKTFLLPNNIVYNIAIAGLCKTGKVDDA--------- 699

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
              ++ F+ + L   VP+ FT    I G    G+V E   L   +        +  +N+L
Sbjct: 700 ---RRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNAL 756

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G CK    + A  LF+KL  K L  +VV YN LI    K G +     L   M E G 
Sbjct: 757 INGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGI 816

Query: 346 ALDV 349
           +  +
Sbjct: 817 SPSI 820



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 23/249 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI G+C EG +  A     +M   G   N+  C T+++GL R G ++    L 
Sbjct: 577 NIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLM 636

Query: 83  QEMVNGMGDFGGIYKPNVFCY-GSLIDGLCKDRLVDQTKD---LFMEMKDKGIN-ANTLL 137
           Q+MV    D G  + P+  C+  S I      ++ D   +    F+   +   N A   L
Sbjct: 637 QKMV----DHG--FFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGL 690

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  K+ +A R   ++  +G  P  FTY  L++GY   G V+ A  L D M R+G +P++
Sbjct: 691 CKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNI 750

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LING CK+ NV+ A            +++F+++    + P   T N  IDG CK 
Sbjct: 751 VTYNALINGLCKSENVDRA------------QRLFHKLHQKGLFPNVVTYNTLIDGYCKI 798

Query: 258 GHVLEVMEL 266
           G++    +L
Sbjct: 799 GNMDAAFKL 807



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 24/252 (9%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL--VEANRLLELM 153
           ++PNV  Y  L+  L + R+ D+T+    ++ D        LCK      V  + L+ + 
Sbjct: 64  FRPNVKSYCKLVHILSRGRMYDETRAYLNQLVD--------LCKFKDRGNVIWDELVGVY 115

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
            +   +P +F    +L  Y   G    A+ +FD+M + G +P + S + L+N   KN   
Sbjct: 116 REFAFSPTVFDM--ILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGET 173

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
             A  V ++MI  G            +VP+ F  +I ++  CK+G V E       +E  
Sbjct: 174 HTAHYVYQQMIRVG------------IVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENL 221

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             E  +  ++SLI G    G  E A  +   +S K +  +VV Y +LI    K+ ++ + 
Sbjct: 222 GVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 281

Query: 334 NYLLLSMEENGC 345
             +L  M+E   
Sbjct: 282 EKVLRGMQEEAA 293


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 166/384 (43%), Gaps = 61/384 (15%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDAS-----------------------------------QL 46
           L+ VT+N LI G C    + +A                                    QL
Sbjct: 258 LSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQL 317

Query: 47  VKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSL 106
           + +M   G  P       L+ GLR+ G ++       E+V  +G FG  + PN+F Y +L
Sbjct: 318 MDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAY----ELVVKVGRFG--FVPNLFVYNAL 371

Query: 107 IDGLCKDRLVDQTKDLF-----MEMKDKGINANTLL---CKKTKLVEANRLLELMMQRGL 158
           I+ LCK   +D+ + L+     M ++  GI  + L+   C+  +L  A    + M+Q G+
Sbjct: 372 INSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGI 431

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
              ++ Y  L+NG C  G ++ A +LF  M  KG  P   +++ LI+GYCK+  V++A  
Sbjct: 432 GETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFK 491

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           +  +MI NG            + P  +T    I GLC    + E  ELF  L     +  
Sbjct: 492 LYNKMIDNG------------ITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPT 539

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
              +N LI G C+ G  + A EL   +  K LV D   Y  LI  L   G++ K    + 
Sbjct: 540 EVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFID 599

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            + +    L+   ++ L+  + Q+
Sbjct: 600 DLHKQNVKLNEMCYSALLHGYCQE 623



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 160/346 (46%), Gaps = 29/346 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+LI   C  G++  A  L   M+    RPN  T   LI    R+G +++ +     M+
Sbjct: 368 YNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMI 427

Query: 87  -NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            +G+G+        V+ Y SLI+G CK   +   + LF+EM +KG+              
Sbjct: 428 QDGIGE-------TVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGY 480

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  ++ +A +L   M+  G+ P ++T+T L++G C   K+  A  LFD +  +   P  
Sbjct: 481 CKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTE 540

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+VLI GYC++  +++A  +  +M   G            +VP+T+T    I GLC  
Sbjct: 541 VTYNVLIEGYCRDGKIDKAFELLEDMHQKG------------LVPDTYTYRPLISGLCST 588

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V +  +    L   N +L    +++L+ G C+ G    A     ++  + +  D+V +
Sbjct: 589 GRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCH 648

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +LI    K+   K    LL  M + G   D +   T MI    KE
Sbjct: 649 AVLIDGALKQPDRKTFFDLLKDMHDQGLRPD-NVIYTSMIDTYSKE 693



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 171/399 (42%), Gaps = 71/399 (17%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            +NSLI G C  G++  A  L  +M   G  P  TT  +LI+G  +   +    KL+ +M
Sbjct: 437 AYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKM 496

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
           ++      GI  PNV+ + +LI GLC    + +  +LF E+ ++ I       N L+   
Sbjct: 497 IDN-----GI-TPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGY 550

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+  K+ +A  LLE M Q+GL P  +TY PL++G C  G+V+ A    D + ++    + 
Sbjct: 551 CRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNE 610

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKKIFNE 234
             YS L++GYC+   + EA++ S EMI  G                       F  +  +
Sbjct: 611 MCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKD 670

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    + P+       ID   K G   +  E +  +    C   V  + +L+ G CK G 
Sbjct: 671 MHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGE 730

Query: 295 FEIASELFNKLSCKN----------------------------------LVADVVAYNIL 320
            + A  LF ++   N                                  L+A+ V +NI+
Sbjct: 731 MDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNII 790

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           I    K G+  +   +L  M ENG   D  T++TL+  +
Sbjct: 791 IRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEY 829



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 171/369 (46%), Gaps = 38/369 (10%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T+K+  A   F   + R  +P  +VT+N LI+G+C +G I  A +L++ M   G  P+  
Sbjct: 518 TNKMAEASELFDELVERKIKP-TEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTY 576

Query: 61  TCDTLITGLRRTGNM----NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           T   LI+GL  TG +    +    LH++ V          K N  CY +L+ G C++  +
Sbjct: 577 TYRPLISGLCSTGRVSKAKDFIDDLHKQNV----------KLNEMCYSALLHGYCQEGRL 626

Query: 117 DQTKDLFMEMKDKGINANTLLCKKT----KLVEANR-----LLELMMQRGLNPVIFTYTP 167
            +      EM  +GIN + L+C        L + +R     LL+ M  +GL P    YT 
Sbjct: 627 MEALSASCEMIQRGINMD-LVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTS 685

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +++ Y   G    A   +D M  +   P+V +Y+ L+NG CK          + EM   G
Sbjct: 686 MIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCK----------AGEMDRAG 735

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
              +F  M+  NV P + T   F+D L K G++ E + L   + +          N +IR
Sbjct: 736 L--LFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAM-LKGLLANTVTHNIIIR 792

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G CK G F  A+++ ++++   +  D V Y+ LI+   + G +     L  +M   G   
Sbjct: 793 GFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEP 852

Query: 348 DVDTFNTLM 356
           D+  +N L+
Sbjct: 853 DLVAYNLLI 861



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 151/340 (44%), Gaps = 28/340 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN-MNLTLKLHQE 84
           T ++L+ G           +L  +    G RP+  TC  ++  +    + +    K+   
Sbjct: 192 TLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWM 251

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
             NG       +  ++  Y  LI GLCK   V +  ++   +  KG+ A+ +        
Sbjct: 252 EANG-------FDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLG 304

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+  +     +L++ M++ G +P     + L++G    GK++ A  L   + R GF+P+
Sbjct: 305 FCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPN 364

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           +F Y+ LIN  CK  ++++A            + +++ M L N+ P   T +I ID  C+
Sbjct: 365 LFVYNALINSLCKGGDLDKA------------ELLYSNMSLMNLRPNGITYSILIDSFCR 412

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G +   +  F  +        V  +NSLI G CKFG    A  LF +++ K +      
Sbjct: 413 SGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATT 472

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +  LI    K+ Q++K   L   M +NG   +V TF  L+
Sbjct: 473 FTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALI 512



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 146/341 (42%), Gaps = 26/341 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN L++ + +   I DA  +VK M      P V T   L+ GL +        +L  E V
Sbjct: 158 FNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESV 217

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLC--KDRLVDQTKDLFMEMKDKGINANTL------LC 138
           N      G+ +P+ +   +++  +C  KD L  + K  +ME     ++  T       LC
Sbjct: 218 NA-----GV-RPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLC 271

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  ++ EA  +   +  +GL   + TY  L+ G+C + +    I L D M   GF P   
Sbjct: 272 KGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEA 331

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           + S L++G  K   +++A  +  ++   GF            VP  F  N  I+ LCK G
Sbjct: 332 AVSGLVDGLRKQGKIDDAYELVVKVGRFGF------------VPNLFVYNALINSLCKGG 379

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L+  + + N       ++ LI   C+ G  ++A   F+++    +   V AYN
Sbjct: 380 DLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYN 439

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            LI+   K G +     L + M   G      TF +L+  +
Sbjct: 440 SLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGY 480



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 106/216 (49%), Gaps = 16/216 (7%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP ++V + S+I  +  EG+ + A +    M T  C PNV T   L+ GL + G M+   
Sbjct: 677 RP-DNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAG 735

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            L + M            PN   YG  +D L K+  + +   L   M  KG+ ANT+   
Sbjct: 736 LLFKRMQ------AANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAML-KGLLANTVTHN 788

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 CK  +  EA ++L  M + G+ P   TY+ L+  YC  G V  ++ L+D+M  +
Sbjct: 789 IIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNR 848

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           G  PD+ +Y++LI G C N  +++A  +  +M+  G
Sbjct: 849 GLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRG 884



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 15/182 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+ G C  G +  A  L K+M      PN  T    +  L + GNM   + LH
Sbjct: 714 NVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLH 773

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLL 137
             M+ G+         N   +  +I G CK     +   +  EM + GI       +TL+
Sbjct: 774 HAMLKGL-------LANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLI 826

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+   +  + +L + M+ RGL P +  Y  L+ G C+ G+++ A  L D M R+G +
Sbjct: 827 YEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGII 886

Query: 195 PD 196
           PD
Sbjct: 887 PD 888



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 50/282 (17%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN----MNL 77
           LN++ +++L+ G+C EG + +A     +M   G   ++     LI G  +  +     +L
Sbjct: 608 LNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDL 667

Query: 78  TLKLHQE-----------MVNGMGDFGGIYK--------------PNVFCYGSLIDGLCK 112
              +H +           M++     G   K              PNV  Y +L++GLCK
Sbjct: 668 LKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCK 727

Query: 113 DRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFT 164
              +D+   LF  M+   +  N++        L K+  + EA  L   M+ +GL     T
Sbjct: 728 AGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAML-KGLLANTVT 786

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           +  ++ G+C +G+ + A  +   M   G  PD  +YS LI  YC++ NV  ++ +   M+
Sbjct: 787 HNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTML 846

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
             G +            P+    N+ I G C NG + +  EL
Sbjct: 847 NRGLE------------PDLVAYNLLIYGCCVNGELDKAFEL 876


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 180/353 (50%), Gaps = 34/353 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L D  FNSLI+ +   G  +++ +L + M +    P+V T ++L++ L + G  N+  ++
Sbjct: 146 LEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEV 205

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL 136
           + EM   +G +G    P+   Y  LI G CK+ +VD+    F EM+    +A     NTL
Sbjct: 206 YDEM---LGTYG--VSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTL 260

Query: 137 ---LCKKTKLVEANRLLELMMQR--GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
              LC+  K+  A  L+  M ++  GLNP + TYT L+ GYC+  +V  A+ + + M  +
Sbjct: 261 VDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSR 320

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P++ +Y+ L+ G C+   +++  +V   M  +G              P+TFT N  I
Sbjct: 321 GLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDG-----------GFSPDTFTFNTII 369

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
              C  G++ E +++F +++          +++LIR  C+ G +++A +LF++L  K ++
Sbjct: 370 HLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEIL 429

Query: 312 AD-------VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
                      +YN +  +L + G+ KK   ++  + + G   D  ++ T+++
Sbjct: 430 LSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQ-DPQSYTTVIM 481



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 58/238 (24%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI+G+CM+  + +A  ++++M + G +PN+ T +TL+ GL     ++      
Sbjct: 290 NVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKM---- 345

Query: 83  QEMVNGMGDFGGIYKPNVF-----------------------------------CYGSLI 107
           ++++  M   GG + P+ F                                    Y +LI
Sbjct: 346 KDVLERMKSDGG-FSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLI 404

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGI------------NANTL---LCKKTKLVEANRLLEL 152
             LC+    D  + LF E+ +K I            + N +   LC+  K  +A R++  
Sbjct: 405 RSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQ 464

Query: 153 MMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           +M+RG  +P   +YT ++ G+C  G       L   M R+ F+PD+  Y  LI+G+ +
Sbjct: 465 LMKRGTQDPQ--SYTTVIMGHCKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQ 520


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 167/342 (48%), Gaps = 27/342 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++   +NSL+KGFC  G +++A +        G R N+ T + +I GL  +G ++  ++L
Sbjct: 332 IDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIEL 390

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
              +     D   I  P+   +G+LI GLC++   ++   +F E +  G   +       
Sbjct: 391 WDLLEK---DVACI--PDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSM 445

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC   +LV+A ++ E M + G  P    Y  L++G+C V + + A+ ++  MA  G 
Sbjct: 446 INGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGC 505

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P V +Y+ LI+G CK    +EA +V+REM+ NGF             P+  T    I G
Sbjct: 506 SPTVITYNTLIDGLCKAEKYQEASSVAREMVENGF------------TPDITTYGSLIRG 553

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL-SCKNLVA 312
           L  +  + + + ++  +     ++ V + N LI G C  G  + A  +F+ +   KN   
Sbjct: 554 LFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPP 613

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           ++V YN L+  L + G I K   L  S+ E+G   D+ ++NT
Sbjct: 614 NLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNT 655



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 173/382 (45%), Gaps = 39/382 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F S  RR   P + +T+++L+ G   +  +  A  L+ +M   G +P+V   + L+
Sbjct: 177 AVTLFDSLRRRQVAP-DCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALL 235

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G     +++  ++V   G      +PN+  Y  ++DGLCK     +  +++  M
Sbjct: 236 GGCFKAGEFEKVMRVWDKLVKDPG-----ARPNLATYNVMLDGLCKFGRFKEVGEVWERM 290

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
               +  + +        LC+   +  A R+   +++ GL      Y  L+ G+C  G+V
Sbjct: 291 VANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRV 350

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS------------------ 220
             A   +DS    G   ++ +Y+++I G   +  V+EA+ +                   
Sbjct: 351 QEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGT 409

Query: 221 --REMILNGFK----KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
               +  NGF      IF E ++     + F+ +  I+GLC  G +++ ++++  ++   
Sbjct: 410 LIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDG 469

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C+    I+N+LI G C+      A  +++K++       V+ YN LI  L K  + ++ +
Sbjct: 470 CKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEAS 529

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            +   M ENG   D+ T+ +L+
Sbjct: 530 SVAREMVENGFTPDITTYGSLI 551



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 162/381 (42%), Gaps = 63/381 (16%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N  T+N ++ G C  G  ++  ++ ++M     +P+V T   LI GL R+G+++   
Sbjct: 261 RP-NLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAA 319

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-NANTL-- 136
           +++ E++       G+   +   Y SL+ G C+   V +    +      G+ N  T   
Sbjct: 320 RVYSEIIKT-----GLVI-DAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNI 373

Query: 137 ----LCKKTKLVEANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
               L     + EA  L +L+ +     P   T+  L++G C  G  N A  +F+     
Sbjct: 374 MIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVS 433

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G   DVFSYS +ING C    + +A+ V  +M  +G K            P +   N  I
Sbjct: 434 GKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCK------------PNSHIYNALI 481

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS------------ 299
            G C+     + + ++  +  + C   V  +N+LI G CK   ++ AS            
Sbjct: 482 SGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFT 541

Query: 300 -----------------------ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
                                   ++ ++  K L  DV+ +NILIH L   G++ +  ++
Sbjct: 542 PDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHV 601

Query: 337 LLSM-EENGCALDVDTFNTLM 356
              M E+  C  ++ T+NTLM
Sbjct: 602 FSDMKEKKNCPPNLVTYNTLM 622



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 144/321 (44%), Gaps = 25/321 (7%)

Query: 51  ATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL 110
           +  GC P + + + L+    R    +        + +G   FG    PN+  Y  ++  L
Sbjct: 111 SILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGA--FGRRIAPNLQTYNIVLRSL 168

Query: 111 CKDRLVDQTKDLFMEMKDKGINAN-----TLLC---KKTKLVEANRLLELMMQRGLNPVI 162
           C    +D+   LF  ++ + +  +     TL+C   K+ +L  A  LL+ M + G+ P +
Sbjct: 169 CARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDV 228

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMAR-KGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
             Y  LL G    G+    + ++D + +  G  P++ +Y+V+++G CK    +E   V  
Sbjct: 229 VCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWE 288

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
            M+ N            N+ P+  T  I I GLC++G V     ++  +  +   +   +
Sbjct: 289 RMVAN------------NLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAM 336

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +NSL++G C+ G  + A + ++      L  ++  YNI+I  L   G + +   L   +E
Sbjct: 337 YNSLVKGFCQAGRVQEAWKFWDSAGFAGL-RNLRTYNIMIKGLFDSGMVDEAIELWDLLE 395

Query: 342 EN-GCALDVDTFNTLMISFLQ 361
           ++  C  D  TF TL+    Q
Sbjct: 396 KDVACIPDTVTFGTLIHGLCQ 416



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 38/194 (19%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK---- 80
           +T+N+LI G C     ++AS + ++M   G  P++TT  +LI GL     ++  L     
Sbjct: 510 ITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQ 569

Query: 81  -----------LHQEMVNGMGDFGGIYK---------------PNVFCYGSLIDGLCKDR 114
                      +H  +++G+   G + +               PN+  Y +L+DGL +  
Sbjct: 570 ILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETG 629

Query: 115 LVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
            +D+   L+  + + G+  + +        LC   ++ E  +LL+ ++ RG+ P + T+ 
Sbjct: 630 YIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWN 689

Query: 167 PLLNGYCLVGKVNV 180
            L+      G + V
Sbjct: 690 ILVRAVIKYGPIQV 703


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 176/373 (47%), Gaps = 38/373 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKK-MATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           N+   N+LI G+ M G +++A   + + M  FG +P++ T + L+ GL + G    +L  
Sbjct: 353 NNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEG----SLSF 408

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +++VN M   G   +PNV  Y  L++GLCK  L+++   +  EM  +G+  N++     
Sbjct: 409 ARDLVNEMSRRGC--EPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCL 466

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC+K K+  A  LL  M  +G  P +FTY  L+ G C V +++ A  LF +M   G 
Sbjct: 467 ICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGA 526

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG--------------FKKI-------- 231
           + +  +Y+ LI+   +    ++A+ +  +M+  G              F K+        
Sbjct: 527 VANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLE 586

Query: 232 -FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
            + +M +  +  +T +CNI I+GLCK G V    E             +  +NS++ G C
Sbjct: 587 LYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLC 646

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A  LF++L  + +  D   YN  I    KEG +           ENG      
Sbjct: 647 KVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNL 706

Query: 351 TFNTLMISFLQKE 363
           T+N L+ + L++ 
Sbjct: 707 TWNVLVYTLLKQS 719



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 166/342 (48%), Gaps = 23/342 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + + +LI     +  + +A +L+++M   GC P+V T + +I GL +   ++   KL 
Sbjct: 252 NSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLV 311

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-DKGINANTLL---C 138
             M+       G Y P+   YG L+ GLC+   +++ + + +++        NTL+    
Sbjct: 312 DRML-----LRGFY-PDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYV 365

Query: 139 KKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
              +L EA   L E M+  G  P IFTY  L++G C  G ++ A  L + M+R+G  P+V
Sbjct: 366 MSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNV 425

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y++L+NG CK   +EEA  V  EM   G            +   +   N  I  LC+ 
Sbjct: 426 ITYAILVNGLCKAGLLEEAGLVLHEMSARG------------LTINSVIYNCLICALCRK 473

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V   + L   +    C+  +  +NSLI G CK    + A  LF+ +     VA+ V Y
Sbjct: 474 EKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTY 533

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N LIHAL + G  +K   L+  M   GC LD  T+N L+ +F
Sbjct: 534 NTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAF 575



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 162/367 (44%), Gaps = 50/367 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH--- 82
           TFN +I G C    I DA++LV +M   G  P+  T   L+ GL R G +N   K+    
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI 349

Query: 83  --------QEMVNG-----------------MGDFGGIYKPNVFCYGSLIDGLCKDRLVD 117
                     ++NG                 M +FG  ++P++F Y  L+ GLCK+  + 
Sbjct: 350 PCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFG--FQPDIFTYNILMHGLCKEGSLS 407

Query: 118 QTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
             +DL  EM  +G   N +        LCK   L EA  +L  M  RGL      Y  L+
Sbjct: 408 FARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLI 467

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
              C   KV+VA+ L   M  KG  PD+F+Y+ LI G CK   ++EA  +   M+L+G  
Sbjct: 468 CALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG-- 525

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                      V    T N  I  L + G   + + L   +    C L    +N LI+  
Sbjct: 526 ----------AVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAF 575

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G  E   EL+ ++    L AD ++ NI+I+ L K G++      L      G   D+
Sbjct: 576 CKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDI 635

Query: 350 DTFNTLM 356
            T+N+++
Sbjct: 636 VTYNSVL 642



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 153/351 (43%), Gaps = 50/351 (14%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT-LKLHQE 84
           T+N L+ G C EG++  A  LV +M+  GC PNV T   L+ GL + G +    L LH+ 
Sbjct: 392 TYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEM 451

Query: 85  MVNGMGDFGGIY----------------------------KPNVFCYGSLIDGLCKDRLV 116
              G+     IY                            KP++F Y SLI GLCK   +
Sbjct: 452 SARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRI 511

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           D+   LF  M   G  AN +        L ++    +A  L+  M+ RG      TY  L
Sbjct: 512 DEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGL 571

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           +  +C VG +   + L++ M   G   D  S +++ING CK   V+ A    R+ I  GF
Sbjct: 572 IKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGF 631

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                       VP+  T N  ++GLCK G + E + LF  L++         +N+ I  
Sbjct: 632 ------------VPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISW 679

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            CK G+   A   F +      V   + +N+L++ L K+   ++ N+ +L 
Sbjct: 680 QCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSN-QENNFFVLD 729



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 166/360 (46%), Gaps = 37/360 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKM-ATFGCRPNVTTCDTLITGLRRTGN-MNLTLKLHQE 84
           F  ++K +   G    A +L+  M A + C P   + D L+  +  TGN   +   +  +
Sbjct: 150 FMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYD-LVLEILVTGNCPQVATNVFYD 208

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M++      G+  P VF +G ++  LC    VD    L  +M   G   N++        
Sbjct: 209 MLSK-----GV-SPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHA 262

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L +K ++ EA +LLE M   G  P + T+  +++G C V K++ A  L D M  +GF PD
Sbjct: 263 LSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPD 322

Query: 197 VFSYSVLINGYCKNFNVEEAM----------NVSREMILNGF---------KKIFNEMKL 237
             +Y  L++G C+   + EA           N     ++NG+         +   NE  +
Sbjct: 323 NMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMI 382

Query: 238 -CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
                P+ FT NI + GLCK G +    +L   +    CE  V  +  L+ G CK G+ E
Sbjct: 383 NFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLE 442

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A  + +++S + L  + V YN LI AL ++ ++     LL  M   GC  D+ T+N+L+
Sbjct: 443 EAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLI 502



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 16/210 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VT+N+LI      G  + A  LV  M   GC  +  T + LI    + GN+   L+L+
Sbjct: 529 NNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELY 588

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           ++M+ +G+G        +      +I+GLCK   VD   +   +  ++G   + +     
Sbjct: 589 EQMIMDGLG-------ADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSV 641

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++ EA  L + +   G+ P  FTY   ++  C  G VN A   F      GF
Sbjct: 642 LNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGF 701

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           +P   +++VL+    K  N E    V  E+
Sbjct: 702 VPSNLTWNVLVYTLLKQSNQENNFFVLDEL 731


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 167/342 (48%), Gaps = 27/342 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++   +NSL+KGFC  G +++A +        G R N+ T + +I GL  +G ++  ++L
Sbjct: 332 IDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIEL 390

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
              +     D   I  P+   +G+LI GLC++   ++   +F E +  G   +       
Sbjct: 391 WDLLEK---DVACI--PDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSM 445

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC   +LV+A ++ E M + G  P    Y  L++G+C V + + A+ ++  MA  G 
Sbjct: 446 INGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGC 505

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P V +Y+ LI+G CK    +EA +V+REM+ NGF             P+  T    I G
Sbjct: 506 SPTVITYNTLIDGLCKAEKYQEASSVAREMVENGF------------TPDITTYGSLIRG 553

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL-SCKNLVA 312
           L  +  + + + ++  +     ++ V + N LI G C  G  + A  +F+ +   KN   
Sbjct: 554 LFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPP 613

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           ++V YN L+  L + G I K   L  S+ E+G   D+ ++NT
Sbjct: 614 NLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNT 655



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 172/382 (45%), Gaps = 39/382 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F S  RR   P + +T+++L+ G   +  +  A  L+ +M     +P+V   + L+
Sbjct: 177 AVTLFDSLRRRQVAP-DRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALL 235

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G     +++  ++V   G      +PN+  Y  ++DGLCK     +  +++  M
Sbjct: 236 GGCFKAGEFEKVMRVWDKLVKDPG-----ARPNLATYNVMLDGLCKFGRFKEVGEVWERM 290

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
               +  + +        LC+   +  A R+   +++ GL      Y  L+ G+C  G+V
Sbjct: 291 VANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRV 350

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS------------------ 220
             A   +DS    G   ++ +Y+++I G   +  V+EA+ +                   
Sbjct: 351 QEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGT 409

Query: 221 --REMILNGFK----KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
               +  NGF      IF E ++     + F+ +  I+GLC  G +++ ++++  ++   
Sbjct: 410 LIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDG 469

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C+    I+N+LI G C+      A  +++K++       V+ YN LI  L K  + ++ +
Sbjct: 470 CKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEAS 529

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            +   M ENG   D+ T+ +L+
Sbjct: 530 SVAREMVENGFTPDITTYGSLI 551



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 162/381 (42%), Gaps = 63/381 (16%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N  T+N ++ G C  G  ++  ++ ++M     +P+V T   LI GL R+G+++   
Sbjct: 261 RP-NLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAA 319

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-NANTL-- 136
           +++ E++       G+   +   Y SL+ G C+   V +    +      G+ N  T   
Sbjct: 320 RVYSEIIKT-----GLVI-DAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNI 373

Query: 137 ----LCKKTKLVEANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
               L     + EA  L +L+ +     P   T+  L++G C  G  N A  +F+     
Sbjct: 374 MIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVS 433

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G   DVFSYS +ING C    + +A+ V  +M  +G K            P +   N  I
Sbjct: 434 GKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCK------------PNSHIYNALI 481

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS------------ 299
            G C+     + + ++  +  + C   V  +N+LI G CK   ++ AS            
Sbjct: 482 SGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFT 541

Query: 300 -----------------------ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
                                   ++ ++  K L  DV+ +NILIH L   G++ +  ++
Sbjct: 542 PDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHV 601

Query: 337 LLSM-EENGCALDVDTFNTLM 356
              M E+  C  ++ T+NTLM
Sbjct: 602 FSDMKEKKNCPPNLVTYNTLM 622



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 143/321 (44%), Gaps = 25/321 (7%)

Query: 51  ATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL 110
           +  GC P + + + L+    R    +        + +G   FG    PN+  Y  ++  L
Sbjct: 111 SILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGA--FGRRIAPNLQTYNIVLRSL 168

Query: 111 CKDRLVDQTKDLFMEMKDKGINAN-----TLLC---KKTKLVEANRLLELMMQRGLNPVI 162
           C    +D+   LF  ++ + +  +     TL+C   K+ +L  A  LL+ M +  + P +
Sbjct: 169 CARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDV 228

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMAR-KGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
             Y  LL G    G+    + ++D + +  G  P++ +Y+V+++G CK    +E   V  
Sbjct: 229 VCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWE 288

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
            M+ N            N+ P+  T  I I GLC++G V     ++  +  +   +   +
Sbjct: 289 RMVAN------------NLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAM 336

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +NSL++G C+ G  + A + ++      L  ++  YNI+I  L   G + +   L   +E
Sbjct: 337 YNSLVKGFCQAGRVQEAWKFWDSAGFAGL-RNLRTYNIMIKGLFDSGMVDEAIELWDLLE 395

Query: 342 EN-GCALDVDTFNTLMISFLQ 361
           ++  C  D  TF TL+    Q
Sbjct: 396 KDVACIPDTVTFGTLIHGLCQ 416



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 38/194 (19%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK---- 80
           +T+N+LI G C     ++AS + ++M   G  P++TT  +LI GL     ++  L     
Sbjct: 510 ITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQ 569

Query: 81  -----------LHQEMVNGMGDFGGIYK---------------PNVFCYGSLIDGLCKDR 114
                      +H  +++G+   G + +               PN+  Y +L+DGL +  
Sbjct: 570 ILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETG 629

Query: 115 LVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
            +D+   L+  + + G+  + +        LC   ++ E  +LL+ ++ RG+ P + T+ 
Sbjct: 630 YIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWN 689

Query: 167 PLLNGYCLVGKVNV 180
            L+      G + V
Sbjct: 690 ILVRAVIKYGPIQV 703


>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
          Length = 506

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 168/356 (47%), Gaps = 26/356 (7%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G  +++ +R +  + FN L+KG C +    DA  +V + M   GC PNV +   ++ G
Sbjct: 112 ALGHVVKKGFR-VEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELGCVPNVFSHTIILKG 170

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L    E+++ M D GG   PNV  Y ++ DGL K    D+    + EM D
Sbjct: 171 LCHENRSQEAL----ELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPDKAYATYREMLD 226

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           + I  N +        LCK   + +A  + + M++ G+ P  FTYT L++G+C  G++  
Sbjct: 227 RRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTE 286

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           AI   + M   G  P+V +YS  ++  CKN    EA  +   M+  G K           
Sbjct: 287 AIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLK----------- 335

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T +  + G    G ++E+  LF  +  S+ +    +FN+LI    K G  + A  
Sbjct: 336 -PDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAML 394

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +F+K+  + L  + V YN LI+   K  +++    L   M  NG + +  T+N ++
Sbjct: 395 VFSKMRHQGLKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIML 450



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 121/254 (47%), Gaps = 28/254 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT++S+I   C    +  A ++  +M   G  PN  T  +L+ G   +G +   +K  
Sbjct: 232 NVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFL 291

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TL 136
           ++M  NG+       +PNV  Y S +D LCK+    + + +F  M  +G+  +     +L
Sbjct: 292 EKMCSNGV-------EPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSL 344

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L     +  LVE + L +LM+Q  + P  + +  L+      GKV+ A+ +F  M  +G 
Sbjct: 345 LHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGL 404

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+  +Y+ LINGYCK   +E A+ + +EM+ NG            V P   T NI + G
Sbjct: 405 KPNCVTYNTLINGYCKITRMENALALFQEMVSNG------------VSPNFITYNIMLQG 452

Query: 254 LCKNGHVLEVMELF 267
           L + G      E +
Sbjct: 453 LFRTGRTGTAKEFY 466



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 94/204 (46%), Gaps = 13/204 (6%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A    + +KGF  +   ++ L+ G C +   ++AM
Sbjct: 86  VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAM 145

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL--EISNC 275
           ++    +L G  ++         VP  F+  I + GLC      E +EL   +  +   C
Sbjct: 146 DI----VLRGMTEL-------GCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGC 194

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              V  ++++  G  K G  + A   + ++  + ++ +VV Y+ +I AL K   + K   
Sbjct: 195 LPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAME 254

Query: 336 LLLSMEENGCALDVDTFNTLMISF 359
           +   M +NG   +  T+ +L+  F
Sbjct: 255 VHDRMVKNGVTPNCFTYTSLVHGF 278


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 163/343 (47%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N++++  C  G +++A +++ +     C P+V T   LI    +   +   +KL  E
Sbjct: 213 VTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDE 272

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     D G   KP+V  Y  LI+G+CK+  +D+       M   G   N +        
Sbjct: 273 MR----DKG--CKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRS 326

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C   + ++A + L  M+++G +P + T+  L+N  C  G +  AI + + M + G  P+
Sbjct: 327 MCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPN 386

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY+ L++  CK+  +E A+     M+  G              P+  T N  +  LCK
Sbjct: 387 SLSYNPLLHALCKDKKMERAIEYLDIMVSRG------------CYPDIVTYNTLLTALCK 434

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V   +E+   L    C   +  +N++I G  K G  + A +L +++  K L  D++ 
Sbjct: 435 DGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIIT 494

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y+ L+  L +EG++ +       +EE G   +  T+N++M+  
Sbjct: 495 YSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGL 537



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 156/341 (45%), Gaps = 23/341 (6%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           +V  N+ ++     G + +  + ++ M   G  P++  C +LI GL +TG    T K  +
Sbjct: 110 EVENNNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGK---TWKATR 166

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTLL---C 138
            M   + D G +  P+V  Y  LI G CK   +     L   M +    +  NT+L   C
Sbjct: 167 VM-EILEDSGAV--PDVITYNVLISGYCKTGEIGSALQLLDRMSVSPDVVTYNTILRTLC 223

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
              KL EA  +L+  MQR   P + TYT L+   C    V  A+ L D M  KG  PDV 
Sbjct: 224 DSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVV 283

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y+VLING CK   ++EA+            +  N M      P   T NI +  +C  G
Sbjct: 284 TYNVLINGICKEGRLDEAI------------RFLNHMPSYGCQPNVITHNIILRSMCSTG 331

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
             ++  +    +    C   V  FN LI   C+ G+   A ++  K+       + ++YN
Sbjct: 332 RWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYN 391

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            L+HAL K+ ++++    L  M   GC  D+ T+NTL+ + 
Sbjct: 392 PLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTAL 432



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 143/340 (42%), Gaps = 61/340 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N LI G C EG + +A + +  M ++GC+PNV T + ++  +  TG      K   E
Sbjct: 283 VTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAE 342

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+           P+V  +  LI+ LC+  L+ +  D+  +M   G   N+L        
Sbjct: 343 MIRKG------CSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHA 396

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA--------------- 181
           LCK  K+  A   L++M+ RG  P I TY  LL   C  GKV+VA               
Sbjct: 397 LCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPV 456

Query: 182 --------------------IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
                               I L D M  KG  PD+ +YS L+ G  +   V+EA+    
Sbjct: 457 LITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAI---- 512

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
                     F++++   V P   T N  + GLCK    +  ++    +    C+     
Sbjct: 513 --------AFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETS 564

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           +  LI G    G+ + A EL N+L  + +V    A  +++
Sbjct: 565 YMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVVV 604



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 155/339 (45%), Gaps = 30/339 (8%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R CY  +  +T+  LI+  C E  +  A +L+ +M   GC+P+V T + LI G+ + G +
Sbjct: 241 RECYPDV--ITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRL 298

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINAN 134
           +  ++     +N M  +G   +PNV  +  ++  +C   R +D  K    EM  KG + +
Sbjct: 299 DEAIRF----LNHMPSYG--CQPNVITHNIILRSMCSTGRWMDAEK-FLAEMIRKGCSPS 351

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +        LC+K  +  A  +LE M Q G  P   +Y PLL+  C   K+  AI   D
Sbjct: 352 VVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLD 411

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M  +G  PD+ +Y+ L+   CK+  V+ A+            +I N++      P   T
Sbjct: 412 IMVSRGCYPDIVTYNTLLTALCKDGKVDVAV------------EILNQLGSKGCSPVLIT 459

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  IDGL K G   + ++L   ++    +  +  +++L+ G  + G  + A   F+ L 
Sbjct: 460 YNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLE 519

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
              +  + + YN ++  L K  Q  +    L  M   GC
Sbjct: 520 EMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGC 558



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 14/228 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++N L+   C +  +  A + +  M + GC P++ T +TL+T L + G +++ +   
Sbjct: 386 NSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV--- 442

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            E++N +G  G    P +  Y ++IDGL K    D    L  EMK KG+  + +      
Sbjct: 443 -EILNQLGSKG--CSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLV 499

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L ++ K+ EA      + + G+ P   TY  ++ G C   +   AI     M  +G  
Sbjct: 500 GGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCK 559

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
           P   SY +LI G       +EA+ +  E+   G  K  +  ++   +P
Sbjct: 560 PTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVVVKIP 607


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 154/333 (46%), Gaps = 25/333 (7%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           + P N  TFN LI+G C  G +    +L   M +FGC P+V T +TLI+GL +   ++  
Sbjct: 193 HSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRA 252

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
             L +E V    D      P+V  Y S+I G  K   ++    LF EM   GI    +  
Sbjct: 253 CDLLKE-VQSRNDCS----PDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTF 307

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                   K   +V A  + E M      P + T+T L++GYC  G + + + ++D M  
Sbjct: 308 NVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKA 367

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           +   P++++YSV+IN  CK+  + EA ++ R            ++K  +V P+ F  N  
Sbjct: 368 RNVSPNIYTYSVIINALCKDNRIHEARDLLR------------QLKCSDVFPKPFIYNPV 415

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           IDG CK G+V E   +   +E   C      F  LI G C  G    A ++F K+     
Sbjct: 416 IDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGC 475

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
             D +  + L+  L K G+  +  +++ +  E+
Sbjct: 476 APDNITISSLVACLLKAGKPSEAFHIVQTASED 508



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 168/343 (48%), Gaps = 31/343 (9%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N L+KG    G + +A  L K+   F   PN  T + LI GL R G +        E+ N
Sbjct: 171 NELVKG----GKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGF----ELFN 222

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--------- 138
            M  FG +  P+V  Y +LI GLCK   +D+  DL  E++ +   +  ++          
Sbjct: 223 AMQSFGCL--PDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFR 280

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  KL  A+ L E M++ G+ P + T+  L++G+  +G +  A A+ + MA    +PDV 
Sbjct: 281 KLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVV 340

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+GYC+  ++   +            K+++ MK  NV P  +T ++ I+ LCK+ 
Sbjct: 341 TFTSLIDGYCRTGDIRLGL------------KVWDVMKARNVSPNIYTYSVIINALCKDN 388

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + E  +L   L+ S+      I+N +I G CK G  + A+ +  ++  K    D V + 
Sbjct: 389 RIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFT 448

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           ILI     +G++ +   +   M   GCA D  T ++L+   L+
Sbjct: 449 ILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSLVACLLK 491


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 151/349 (43%), Gaps = 28/349 (8%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
            RC   L    +NSLI  F   G  + A  + + M   G RP+  T + L+   ++   +
Sbjct: 83  HRC--ALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRV 140

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           +   KL +EM N          PNV  Y  LID +CK   V++   +F++MK +G   N 
Sbjct: 141 DSVWKLFEEMQNQN------CSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNI 194

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
                    L K   + +A  L E M   GL      Y  L++G    G+ + A  LF  
Sbjct: 195 FTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFRE 254

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  KG  PD  +++ L+ G        EA            ++IF E +      +    
Sbjct: 255 MLSKGLQPDHVTFTSLVYGLGVAGRASEA------------RRIFQEARDVGCALDVNLY 302

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           N+ ID LCK+  + E  E+F  LE       V  FN+L+ G CK G    A  L   +  
Sbjct: 303 NVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKR 362

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                DV  YN LI  L K G++++   LLL M+  G   DV T+NTL+
Sbjct: 363 AGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLI 411



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 163/346 (47%), Gaps = 31/346 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T++ LI   C  G +  A ++   M + GCRPN+ T  ++I GL ++G+++    L 
Sbjct: 158 NVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLF 217

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM +      G+    V  Y SLI GL +    D    LF EM  KG+  + +      
Sbjct: 218 EEMTS-----EGLVATRV-VYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLV 271

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L    +  EA R+ +     G    +  Y  L++  C   +++ A  +F  +   G +
Sbjct: 272 YGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLV 331

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV++++ L++G CK+  + +A       IL G      +MK     P+    N  IDGL
Sbjct: 332 PDVYTFNALMDGLCKSGRIHDA------FILLG------DMKRAGCTPDVTVYNTLIDGL 379

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K+G V E  +L   ++    E  V  +N+LI   CK G  E A  LF ++S K   A+ 
Sbjct: 380 RKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF-ANT 438

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGC--ALDVD--TFNTLM 356
           V YN +++ L   G++ +   L   M++      +D D  T+ TL+
Sbjct: 439 VTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLL 484



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 88/171 (51%), Gaps = 19/171 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN+L+ G C  G I DA  L+  M   GC P+VT  +TLI GLR++G +    +L  EM
Sbjct: 336 TFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEM 395

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
              +G     Y+P+V  Y +LID  CK   ++    LF E+  KG  ANT+        L
Sbjct: 396 -QSLG-----YEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF-ANTVTYNTILNGL 448

Query: 138 CKKTKLVEANRLLELMMQRGLNPVI----FTYTPLLNGYCLVGKVNVAIAL 184
           C   ++ EA +L   M Q  ++ VI     TYT LLNG    G   +A +L
Sbjct: 449 CMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAGLSELANSL 499



 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 35/80 (43%)

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            IF  L RG    G+ E + E   ++          AYN LI A  K G  +K   +   
Sbjct: 55  RIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRV 114

Query: 340 MEENGCALDVDTFNTLMISF 359
           M ++G   D  TFN LM +F
Sbjct: 115 MGQSGLRPDTYTFNVLMNAF 134


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 158/348 (45%), Gaps = 26/348 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N  TF+ +I G    G++  A  L + MA  GC+P++   + LI GL  +  +  +  
Sbjct: 321 PPNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCG 380

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----INANTL 136
           L QEM     +  GI +P  F    +   LC+   +     L  +M+  G    I  +T 
Sbjct: 381 LLQEM-----EESGI-EPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTS 434

Query: 137 L----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L    CK  K VEA + L  M + G  P I  Y+  L+G   + +V+ A+ LF  +  +G
Sbjct: 435 LVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQG 494

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           + PDV +Y++LI G CK   + EA N+  EM   G            +VP   T N  ID
Sbjct: 495 YCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKG------------LVPSAVTYNTLID 542

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK  H+ E M     +     E  V  +++LI G C  G  + A  L+N++  K    
Sbjct: 543 GLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTP 602

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
             +AY   IH L   G+  +    L  MEE     D   +  L+ +FL
Sbjct: 603 SSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFL 650



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 164/383 (42%), Gaps = 57/383 (14%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  TF SLI GF  E  +  A  L  KM   G  P+++  D +I GL    ++   L L
Sbjct: 168 LNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCL 227

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTLLCKK 140
           + EM       G   +P+V     LI    K+   ++    F EM +D    A+TLL   
Sbjct: 228 YSEMK------GFKIQPDVKIVTKLISSFSKE---EELTCFFEEMHEDMDPKASTLLYNS 278

Query: 141 T--------KLVEANRLLELM-------------MQRG---LNPVIFTYTPLLNGYCLVG 176
                     + +A  LL+ +             + RG   + P   T++ ++NG    G
Sbjct: 279 VLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTG 338

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK------- 229
            +++A+ LF  MAR G  PD+  Y+ LI+G C +  ++E+  + +EM  +G +       
Sbjct: 339 DLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNN 398

Query: 230 ----------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
                            +  +M++   VP        +  LCK+G  +E  +    +   
Sbjct: 399 CIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEE 458

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             +  +  +++ + G  K    + A +LF  +  +    DV+AYNILI  L K  +I + 
Sbjct: 459 GFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEA 518

Query: 334 NYLLLSMEENGCALDVDTFNTLM 356
             LL  MEE G      T+NTL+
Sbjct: 519 QNLLHEMEEKGLVPSAVTYNTLI 541



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 49/242 (20%)

Query: 29  SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
           SL+K  C  G   +A + +  MA  G +P++      + GL +   ++  LKL Q++   
Sbjct: 434 SLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDIC-A 492

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL---LCKK 140
            G     Y P+V  Y  LI GLCK + + + ++L  EM++KG     +  NTL   LCK 
Sbjct: 493 QG-----YCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKT 547

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-------- 192
             L EA   L +M+++   P + TY+ L+NG C  G+ + A+ L++ M RKG        
Sbjct: 548 DHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAY 607

Query: 193 ---------------------------FMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
                                        PD + Y  L+N +  + N   A  + +EM+ 
Sbjct: 608 MAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVD 667

Query: 226 NG 227
            G
Sbjct: 668 KG 669



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 154/362 (42%), Gaps = 55/362 (15%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
           LI+     G + +A+ L  ++   G C PN  +   L+  L ++    + + L +  +  
Sbjct: 36  LIRCLGNAGLVVEANLLFDQVQKMGLCVPNSYSYTCLLEVLSKS----ICIDLLEMRLKE 91

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-------KKT 141
           M D G  +  + +    ++   C     D+  D+F E+ D+G     +         K  
Sbjct: 92  MHDHGWGF--DKYTLTPVLQVYCNMAEFDKALDVFNEIHDRGWVDEYVFSILVLAFSKWG 149

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           K+ +A  L+E M ++ +     T+  L+ G+    +V+ A+ LFD M + GF PD+  Y 
Sbjct: 150 KVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYD 209

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFK-----KIFNEMKLCNVVPETFTC--------- 247
           V+I G C N +V++A+ +  EM   GFK     KI  ++       E  TC         
Sbjct: 210 VIIGGLCVNKDVKKALCLYSEM--KGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDM 267

Query: 248 ---------NIFIDGLCKNGHVLEVMELFPTLEISNC-------ELF---------VEIF 282
                    N  ++ L  NG V +   L   + I NC       +LF            F
Sbjct: 268 DPKASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTF 327

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           + +I G  K G  ++A  LF  ++      D++ YN LI  L    ++++   LL  MEE
Sbjct: 328 SIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEE 387

Query: 343 NG 344
           +G
Sbjct: 388 SG 389



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 15/204 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
            +V  AL  F     + Y P + + +N LIKG C    I +A  L+ +M   G  P+  T
Sbjct: 478 QEVDQALKLFQDICAQGYCP-DVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVT 536

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI GL +T ++   +     M+          +PNV  Y +LI+GLC     D    
Sbjct: 537 YNTLIDGLCKTDHLEEAMLFLSMMIEKE------REPNVITYSTLINGLCNAGRPDDALV 590

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L+ EM  KG   +++        L    +  EA   L  M +R + P  + Y  LLN + 
Sbjct: 591 LWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFL 650

Query: 174 LVGKVNVAIALFDSMARKGFMPDV 197
           +     +A  +   M  KG  PD+
Sbjct: 651 VDSNQPLAFEILQEMVDKGKFPDL 674



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 14/222 (6%)

Query: 143 LVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           +VEAN L + + + GL  P  ++YT LL        +++       M   G+  D ++ +
Sbjct: 46  VVEANLLFDQVQKMGLCVPNSYSYTCLLEVLSKSICIDLLEMRLKEMHDHGWGFDKYTLT 105

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            ++  YC     ++A++V            FNE+     V E +  +I +    K G V 
Sbjct: 106 PVLQVYCNMAEFDKALDV------------FNEIHDRGWVDE-YVFSILVLAFSKWGKVD 152

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           +  EL  T+E  N  L  + F SLI G  K    + A  LF+K+       D+  Y+++I
Sbjct: 153 KACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVII 212

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             L     +KK   L   M+      DV     L+ SF ++E
Sbjct: 213 GGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEE 254


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 29/348 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTF+ LI+ FC  G +  A Q++++M   GC  N T C+ +I  + + G ++   KL 
Sbjct: 282 NEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKL- 340

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------- 135
              +N MG +G    P+   Y +++ GLC+    D  K+L  EM       N        
Sbjct: 341 ---LNDMGSYG--CNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFI 395

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            +LC+K  + +A  L+E M + G    + TY  L+NG+C+ G ++ A+ LF SM  K   
Sbjct: 396 CILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK--- 452

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+ L+ G C         N  R   L+G  ++  EM   +  P   T N+ +   
Sbjct: 453 PNTITYTTLLTGLC---------NAER---LDGAAELVAEMLRGDCPPNVVTFNVLVSFF 500

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + E +EL   +    C   +  +N+L+ G  K    E A EL + L  K +  DV
Sbjct: 501 CQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDV 560

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + ++ +I  L KE +I++   L   +++ G       +N +++   ++
Sbjct: 561 ITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKR 608



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 167/367 (45%), Gaps = 36/367 (9%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            ++VL A    GS       P++   +N+L+ G+C  G++  A +L+  M      P+  
Sbjct: 95  AARVLRAAEGSGS-------PVDVFAYNTLVAGYCRYGHLDAARRLIGSMPV---APDAY 144

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   LI  L   G +   L L  +M+          +PNV  Y  L++ +C++   +Q  
Sbjct: 145 TYTPLIRVLCDRGRVADALSLLDDMLRRG------CQPNVVTYTVLLEAMCRNSGFEQAM 198

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            +  EM+ KG   N +        +C++ ++ +A  LL  +   G  P   +YT LL G 
Sbjct: 199 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGL 258

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C   + +    LF  M  K  MP+  ++ +LI  +C+   VE A+ V  +M  +G     
Sbjct: 259 CASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHG----- 313

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                      T  CNI I+ +CK G V +  +L   +    C      + ++++G C+ 
Sbjct: 314 -------CATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRA 366

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             ++ A EL N++   N   + V +N  I  L ++G I++   L+  M E+GC + V T+
Sbjct: 367 ERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTY 426

Query: 353 NTLMISF 359
           N L+  F
Sbjct: 427 NALVNGF 433



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 156/332 (46%), Gaps = 26/332 (7%)

Query: 39  NIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97
           ++  A +LV++  +  G  P+V  C  LI  L R G  +   ++ +    G G       
Sbjct: 55  DLAGAVRLVERSGSCDGEAPDVYLCTKLIRNLCRRGRTSDAARVLR-AAEGSGS-----P 108

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLE 151
            +VF Y +L+ G C+   +D  + L   M     +A T      +LC + ++ +A  LL+
Sbjct: 109 VDVFAYNTLVAGYCRYGHLDAARRLIGSMP-VAPDAYTYTPLIRVLCDRGRVADALSLLD 167

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            M++RG  P + TYT LL   C       A+A+ D M  KG  P++ +Y+V+ING C+  
Sbjct: 168 DMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREG 227

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            V++A  +   +   GF+            P+T +    + GLC +    +V ELF  + 
Sbjct: 228 RVDDARELLNRLPSYGFQ------------PDTVSYTTLLKGLCASKRWDDVEELFAEMM 275

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
             NC      F+ LIR  C+ G+ E A ++  +++      +    NI+I+++ K+G++ 
Sbjct: 276 EKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVD 335

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               LL  M   GC  D  ++ T++    + E
Sbjct: 336 DAFKLLNDMGSYGCNPDTISYTTVLKGLCRAE 367



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 133/299 (44%), Gaps = 29/299 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N+VTFN+ I   C +G I  A  L+++M+  GC   V T + L+ G    G+++  L+
Sbjct: 385 PPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALE 444

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------ 134
           L + M           KPN   Y +L+ GLC    +D   +L  EM       N      
Sbjct: 445 LFRSMP---------CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNV 495

Query: 135 --TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             +  C+K  L EA  L+E MM+ G  P + TY  LL+G         A+ L   +  KG
Sbjct: 496 LVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKG 555

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PDV ++S +I    K   +EEA+            ++F+ ++   + P+    N  + 
Sbjct: 556 VSPDVITFSSIIGILSKEDRIEEAV------------QLFHVVQDIGMRPKAVVYNKILL 603

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           GLCK   +   ++ F  +  + C      +  LI G    G+ + A +L + L  + ++
Sbjct: 604 GLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGVL 662



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 3/138 (2%)

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           ++RE +    + +          P+ + C   I  LC+ G   +   +    E S   + 
Sbjct: 51  IAREDLAGAVRLVERSGSCDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVD 110

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           V  +N+L+ G C++G  + A  L   +    +  D   Y  LI  L   G++     LL 
Sbjct: 111 VFAYNTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLD 167

Query: 339 SMEENGCALDVDTFNTLM 356
            M   GC  +V T+  L+
Sbjct: 168 DMLRRGCQPNVVTYTVLL 185


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 172/378 (45%), Gaps = 61/378 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN+++   C EG +  A +++  M  FGC PN  + + L+ GL   G  +      +E
Sbjct: 208 VTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRA----KE 263

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           ++  M   G   K +   Y  LI G CK  + ++  DL  EM  +G     +  NT+   
Sbjct: 264 LIEQMSMLG--LKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYS 321

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+  ++ +A R L++M+   L P + +Y  L+ GY  +G    A+ LF  +  K  +P 
Sbjct: 322 LCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPS 381

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ LI+G C+  N++ A  +  +MI +G         LC   P+  T  I + G C+
Sbjct: 382 VVTYNTLIDGGCRTGNLDIAKGMKDDMIKHG---------LC---PDVVTFTILVRGFCQ 429

Query: 257 NGHVLEVMELFPT--------------------LEISNC--------ELFVE-------I 281
            G++    ELF                      L++ N         E+  E        
Sbjct: 430 MGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLIT 489

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N LI G CK G F+ A+EL  K+  + +V D V Y  +IHA    G ++K   +   M 
Sbjct: 490 YNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDML 549

Query: 342 ENGCALDVDTFNTLMISF 359
           + G    V T+  L+ S+
Sbjct: 550 KKGIHPSVVTYTVLIHSY 567



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 152/340 (44%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+++   C  G + DA + +  M      P++ + +TLI G  R GN    L L  E
Sbjct: 313 VTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSE 372

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           + +          P+V  Y +LIDG C+   +D  K +  +M   G+  + +        
Sbjct: 373 LRSKN------LVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRG 426

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+   L  A  L + M+ RGL P    YT  + G   +G  + A  + + M  +GF PD
Sbjct: 427 FCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPD 486

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+VLING CK  N ++A  + ++M L G            +VP+  T    I     
Sbjct: 487 LITYNVLINGLCKLGNFDDANELVQKMRLEG------------IVPDHVTYTSIIHAHLI 534

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G + +  E+F  +        V  +  LI      G  + A + F+++  K +  +V+ 
Sbjct: 535 SGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVIT 594

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN LI+ L KE  +     L   ME  G + +  T+  L+
Sbjct: 595 YNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILI 634



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 150/334 (44%), Gaps = 31/334 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL+ F     +   P + VT+N+LI G C  GN+  A  +   M   G  P+V T   L+
Sbjct: 366 ALLLFSELRSKNLVP-SVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILV 424

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM-- 124
            G  + GN+ +  +L  EM++      G+ KP+   Y + I G  K  L + +K   M  
Sbjct: 425 RGFCQMGNLPMAKELFDEMLSR-----GL-KPDCIAYTTRIVGELK--LGNPSKAFGMKE 476

Query: 125 EMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           EMK +G     I  N L   LCK     +AN L++ M   G+ P   TYT +++ + + G
Sbjct: 477 EMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISG 536

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
            +  A  +F  M +KG  P V +Y+VLI+ Y     ++ A            KK F+EM+
Sbjct: 537 LLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFA------------KKYFDEMQ 584

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              V P   T N  I GLCK   +     LF  +E          +  LI        ++
Sbjct: 585 DKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQ 644

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
            A +L+  +  + +  D   ++ L+  L K+ ++
Sbjct: 645 DALKLYKDMLDREIKPDSCTHSALMKHLSKDYKL 678



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 125/285 (43%), Gaps = 61/285 (21%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF  L++GFC  GN+  A +L  +M + G +P+     T I G  + GN +    + +E
Sbjct: 418 VTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEE 477

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT--- 141
           M    G     + P++  Y  LI+GLCK    D   +L  +M+ +GI  + +        
Sbjct: 478 M-KAEG-----FPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHA 531

Query: 142 -----KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
                 L +A  +   M+++G++P + TYT L++ Y + G+++ A   FD M  KG  P+
Sbjct: 532 HLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPN 591

Query: 197 V-----------------------------------FSYSVLINGYCKNFNVEEAMNVSR 221
           V                                   ++Y++LIN   +N N++   +   
Sbjct: 592 VITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILIN---ENSNLQYWQDAL- 647

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
                   K++ +M    + P++ T +  +  L K+  +L V+ L
Sbjct: 648 --------KLYKDMLDREIKPDSCTHSALMKHLSKDYKLLAVLRL 684



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 26/321 (8%)

Query: 49  KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108
           KM   G  P+V  C+ ++  L+    +N   +++  M+          +P +  + +++D
Sbjct: 162 KMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQ------IRPTIVTFNTMMD 215

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNP 160
             CK+  V +  ++   M+  G + N +        L  K +   A  L+E M   GL  
Sbjct: 216 SRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKV 275

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
              TY PL+ G+C       A  L   M  +G +P V +Y+ ++   C+   V +A    
Sbjct: 276 SAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDA---- 331

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                   ++  + M   +++P+  + N  I G  + G+  E + LF  L   N    V 
Sbjct: 332 --------RRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVV 383

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            +N+LI G C+ G  +IA  + + +    L  DVV + IL+    + G +     L   M
Sbjct: 384 TYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEM 443

Query: 341 EENGCALDVDTFNTLMISFLQ 361
              G   D   + T ++  L+
Sbjct: 444 LSRGLKPDCIAYTTRIVGELK 464



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 12/178 (6%)

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           + +F  M   G +PDV           +N N    +   + M+ N  +++++ M  C + 
Sbjct: 157 LMVFYKMVNNGLLPDV-----------RNCNRVLKLLKDKSMV-NEVEEVYSVMIKCQIR 204

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P   T N  +D  CK G V   +E+   + +  C+     +N L+ G    G F+ A EL
Sbjct: 205 PTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKEL 264

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             ++S   L      YN LI    K+   ++ N L   M   G    V T+NT+M S 
Sbjct: 265 IEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSL 322



 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 12/163 (7%)

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
            +LI  + K   +E+ + V  +M+ NG            ++P+   CN  +  L     V
Sbjct: 141 DLLIQVFAKKLILEKCLMVFYKMVNNG------------LLPDVRNCNRVLKLLKDKSMV 188

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            EV E++  +        +  FN+++   CK G    A E+ + +       + V+YN+L
Sbjct: 189 NEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVL 248

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           ++ L  +G+  +   L+  M   G  +   T+N L+  F +KE
Sbjct: 249 VNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKE 291


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 187/430 (43%), Gaps = 95/430 (22%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ S+I G C + ++  A Q+  +MA  GC PN  T  TLI GL  +G +N    L +EM
Sbjct: 252 TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 311

Query: 86  V-NG-----------------MGDFGGIYK-----------PNVFCYGSLIDGLCKDRLV 116
           + +G                 MG +   ++           PNV+ Y +LI GLC   ++
Sbjct: 312 ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGIL 371

Query: 117 DQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
                LF  M   G+  NT        +L +  ++  A  +L LM + G +P I TY  +
Sbjct: 372 KVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------- 219
           + GYC++G    A+ + ++M ++G   ++ +Y+ +I GYC + N   A+ +         
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 220 -----SREMILNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                S   ++ GF KI         FNEM    + P   T    IDG CK+  +     
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 266 LFPTLEISNCELFVEIFNSLIRGC-----------------------------------C 290
           L   ++ S C   V+ +N LI G                                    C
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLC 611

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G   +A E+FNK+  +  + +++ Y+ LI ALG+EG++++   L   +E +G   D  
Sbjct: 612 KNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEI 671

Query: 351 TFNTLMISFL 360
           T+  ++ +++
Sbjct: 672 TYVKMIEAYI 681



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 166/365 (45%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + +N++I   C +GN+ DA  ++KK+      P+  T  ++I G  R  +++  L++ 
Sbjct: 214 NLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVF 273

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANT----- 135
            +M     +      PN   Y +LI+GLC    V++  DL  EM   GI   A+T     
Sbjct: 274 NQMAKEGCE------PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC      +A RL   M  +G  P ++TYT L++G C+ G + VAI LF  M+R G  
Sbjct: 328 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVF 387

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM---------------K 236
           P+  +Y+ LIN   +N  ++ A  V   M  NG       +NEM                
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 237 LCNVVPETFTCNI-----FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           + N++    + N+      I G C +G+    + +   +    C+     +  LI G CK
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               E A  LFN++    L  + V Y  LI    K+ ++     LL  M+ +GC  +V T
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567

Query: 352 FNTLM 356
           +N L+
Sbjct: 568 YNVLI 572



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 137/268 (51%), Gaps = 20/268 (7%)

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           +F Y +L+  L +  +     D +  M  +G+  N L        LCK   + +A  +++
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            + +  ++P  FTYT ++ G+C    ++ A+ +F+ MA++G  P+  +YS LING C + 
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG 299

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            V EA ++ REMIL+G            ++P   TC   I  LC  G   +   LF  ++
Sbjct: 300 RVNEAFDLIREMILHG------------ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
              CE  V  + +LI G C  GI ++A  LF+++S   +  + V YN LI+ L +  +IK
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIK 407

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
               +L  M  NGC+ ++ T+N ++  +
Sbjct: 408 YAFVVLNLMGRNGCSPNIVTYNEMIKGY 435



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 177/412 (42%), Gaps = 66/412 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A++   + ++R +   N VT+N++IKG+C  GN   A +++  M   GC+P+  +   LI
Sbjct: 444 AMLVMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  +   M     L  EMV+      G+  PN   Y +LIDG CKD  +D    L   M
Sbjct: 503 CGFCKISKMESAFGLFNEMVDD-----GLC-PNEVTYTALIDGYCKDEKLDTATSLLEHM 556

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K  G   N          L K+     A  L ++M++ G+ P + TYT +++G C  G  
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 616

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---------- 228
           ++A+ +F+ M  +G +P++ +YS LI    +   VEEA N+  E+  +G           
Sbjct: 617 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKM 676

Query: 229 ----------KKIFN---EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL--FPTLEIS 273
                     +  FN    M      P  +T  + I GL KN ++L    L   P + + 
Sbjct: 677 IEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-KNEYLLADQRLAALPDV-VP 734

Query: 274 NCE------------------------LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           NC                         L V++ N+L+      G +  A+EL   +  + 
Sbjct: 735 NCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQG 794

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           L  D  AYN L+ +L +   +     +   M   GC + ++ +  L+ +  Q
Sbjct: 795 LCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQ 846


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 170/355 (47%), Gaps = 30/355 (8%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R   PL   TFN +++  C  G    A +L+++M     RPN  T +T+I G    G + 
Sbjct: 147 RLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQ 202

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------ 130
             L + +EM     + GGI  PN + YG++I G CK   VD+   +F EM  KG      
Sbjct: 203 AALDIMREMR----ERGGI-APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEA 257

Query: 131 INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +  N L+   C + KL  A    + M++RG+   + TY  L++   + G+   A  L + 
Sbjct: 258 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 317

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  KG   DVF+Y++LING+CK  NV++A+ +   M   G +          VV  T+T 
Sbjct: 318 MGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR--------ATVV--TYTS 367

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
            I+   L K G V E  +LF           + ++N+LI      G  + A E+  ++  
Sbjct: 368 LIY--ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 425

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           K +  D V YN L+  L   G++ +   L+  M + G   D+ T+NTL+  +  K
Sbjct: 426 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMK 480



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 173/378 (45%), Gaps = 44/378 (11%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRT 72
            +R+  RP N VT+N++I GFC  G ++ A  ++++M   G   PN  T  T+I+G  + 
Sbjct: 176 LLRQMPRP-NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 234

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC-----------KDRLVDQTKD 121
           G ++  +K+  EM+       G  KP    Y +LI G C           +DR+V++   
Sbjct: 235 GRVDEAVKVFDEMLTK-----GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVA 289

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           + +   +  ++A   L    +  EA  L+E M  +GL   +FTY  L+NG+C  G V  A
Sbjct: 290 MTVATYNLLVHA---LFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKA 346

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK------------ 229
           + +F++M+R+G    V +Y+ LI    K   V+E   +  E +  G +            
Sbjct: 347 LEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 406

Query: 230 -----------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                      +I  EM+   + P+  T N  + GLC  G V E  +L   +     +  
Sbjct: 407 HSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPD 466

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+LI G    G  + A  + N++  K     ++ YN LI  L K GQ      ++ 
Sbjct: 467 LVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVK 526

Query: 339 SMEENGCALDVDTFNTLM 356
            M ENG   D  T+ +L+
Sbjct: 527 EMVENGITPDDSTYISLI 544



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           +T+N+LI+G C  G   DA  +VK+M   G  P+ +T  +LI GL
Sbjct: 503 LTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 547


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 160/338 (47%), Gaps = 28/338 (8%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N  I   C +  + DA Q+V+KM   G  P+V T  T++  L      +  + L +EMV 
Sbjct: 264 NIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMVK 323

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN-----ANTLL---CK 139
            MG      KP+V   G+LI GLCK+  V++  +L   M    I       N L+    +
Sbjct: 324 -MG-----LKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWR 377

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
              + +A  ++  M   G  P + TY  LLN YC +G +  A  L   M   G  PD +S
Sbjct: 378 AGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYS 437

Query: 200 YSVLINGYCKNFNVEEAMN-VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           Y+ L+ G CK   +++A   VS  M + GF         C++V    +CNI ID  CK  
Sbjct: 438 YNQLLKGLCKTHQLDKAFAFVSDHMEVGGF---------CDIV----SCNILIDAFCKVK 484

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            V   +ELF  ++    +     + +LI G    G + +A ELF ++    +  +V  YN
Sbjct: 485 KVKSALELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYN 544

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           I++H L K G +K+   + L M +     D+ T+NTL+
Sbjct: 545 IMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTLI 582



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 134/310 (43%), Gaps = 34/310 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM----NLTLKLH 82
           +N+LI GF   G+I  A  ++  M T GC P V T + L+      G M    NL  K+ 
Sbjct: 368 YNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKME 427

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
              VN          P+ + Y  L+ GLCK   +D+      +  + G     ++ N L+
Sbjct: 428 TSGVN----------PDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILI 477

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  K+  A  L + M  +G+     TY  L+NG   VG  N+A  LF+ M +    
Sbjct: 478 DAFCKVKKVKSALELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQID 537

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V  Y+++++  CK  +++ A            +KIF  M    ++P+  T N  I  L
Sbjct: 538 PNVNLYNIMLHHLCKVGDLKRA------------QKIFLHMIQKEILPDIVTYNTLIYWL 585

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            KN   +E ++LF  +     E     F  LI G    G   +A E++  +    ++ D 
Sbjct: 586 GKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGLLDEGRSTLAYEVWEYMMENGIILDR 645

Query: 315 VAYNILIHAL 324
                LI  L
Sbjct: 646 EVSERLISVL 655



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 148/330 (44%), Gaps = 28/330 (8%)

Query: 36  MEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGG 94
           ++GN    S+ +  + + G   + +    L++G  R G  +  +    EMV +G  +FG 
Sbjct: 132 VDGNFALLSEFLGTVRSQGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFGI 191

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFME--------MKDKGINANTLLCKKTKLVEA 146
            Y   +   G LI   C D LV++   + +            + I+A   LC+  ++   
Sbjct: 192 DYNRYI---GVLIKNCCFD-LVEKYYGMALSKGLCLTPFTYSRWISA---LCQSNRIELV 244

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             LL  M + G +P I+     ++  C   +++ A+ + + M  KG +PDV +Y+ ++  
Sbjct: 245 EELLADMDRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGC 304

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            C N    EA+ +  EM+  G K            P+   C   I GLCKN  V E  EL
Sbjct: 305 LCNNKRFSEAVGLWEEMVKMGLK------------PDVVACGALIFGLCKNSKVEEAFEL 352

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +   N EL V I+N+LI G  + G  + A  + + +        VV YNIL++    
Sbjct: 353 ASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCT 412

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            G ++K   L+  ME +G   D  ++N L+
Sbjct: 413 IGMMEKAENLITKMETSGVNPDRYSYNQLL 442



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 14/180 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+ N LI  FC    ++ A +L K+M   G + +  T  TLI GL   G  NL  +L ++
Sbjct: 471 VSCNILIDAFCKVKKVKSALELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQ 530

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL--- 136
           M+    D      PNV  Y  ++  LCK   + + + +F+ M  K I       NTL   
Sbjct: 531 MLKAQID------PNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTLIYW 584

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K ++ +EA  L + M  +G+ P   T+  L+NG    G+  +A  +++ M   G + D
Sbjct: 585 LGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGLLDEGRSTLAYEVWEYMMENGIILD 644


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 185/375 (49%), Gaps = 41/375 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V FN++I    ++G +++A++L + M + GC P+  T   LI GL + G +   +KL
Sbjct: 306 LNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKL 365

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
            +EM     D G  + P++  Y  L+   C++ + D  + +   M DKG++ N       
Sbjct: 366 LREM----EDKG--FAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGM 419

Query: 136 --LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              +CK  ++ +A R ++ M  +G  P I TY  ++   C   ++  A  LF+++  +G 
Sbjct: 420 ICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGV 479

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMIL----------NGFKK------------- 230
           + +  +Y+ LI+   +N + ++A++++ +M+L          NG  K             
Sbjct: 480 VANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIM 539

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRG 288
           + +EM    + P   + N+ I  LCK   V + +EL  + E+ N EL  +I  +N+LI G
Sbjct: 540 LLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALEL--SKEMLNQELTPDIVTYNTLING 597

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            CK G    A  L  KL  +++ AD++ YNILI    K   +   + LL     +G   +
Sbjct: 598 LCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPN 657

Query: 349 VDTFNTLMISFLQKE 363
             T+  ++ +F++K 
Sbjct: 658 ERTWGIMVQNFVRKS 672



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 174/383 (45%), Gaps = 35/383 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL    S  R    P + V + ++I   C +G + +A+ L+ +M   GC  +V T + ++
Sbjct: 191 ALTMLRSMARHGCVP-DTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIV 249

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL   G +    +L    V+ M   G +  PN   YG L+ GLC    V++ + +   +
Sbjct: 250 HGLCTLGRLREAARL----VDRMMIRGCV--PNAITYGFLLKGLCLASQVEEARTMLGRV 303

Query: 127 KDKGINA-NTLLCK---KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
            +  +   NT++ +     KL EA  L E M  +G  P   TY+ L++G C +G++  A+
Sbjct: 304 PELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAM 363

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNF---NVEEAMNVSRE----MILNGFK------ 229
            L   M  KGF P + +Y++L++ +C+N    N+   + V  +    M L G+       
Sbjct: 364 KLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAV 423

Query: 230 ----------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                     +   EMK     P+  T N  I  LC N  + E   LF  L         
Sbjct: 424 CKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANA 483

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             +N+LI    + G ++ A  L N +       D+V+YN LI AL ++G + +   LL  
Sbjct: 484 ITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSE 543

Query: 340 MEENGCALDVDTFNTLMISFLQK 362
           M E G   +  ++N L+IS L K
Sbjct: 544 MAEKGIKPNNVSYN-LLISELCK 565



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 166/362 (45%), Gaps = 41/362 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN ++ G C  G +R+A++LV +M   GC PN  T   L+ GL         L    E 
Sbjct: 244 TFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGL--------CLASQVEE 295

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG--INANTL------L 137
              M   G + + NV  + ++I     D  + +  +L+  M  KG   +A+T       L
Sbjct: 296 ARTM--LGRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGL 353

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  +L  A +LL  M  +G  P I TYT LL+ +C  G  +   A+ + M+ KG   ++
Sbjct: 354 CKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNL 413

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM--KLCN------------- 239
             Y+ +I   CK+  +++AM   +EM   G+K     +N +   LCN             
Sbjct: 414 EGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFEN 473

Query: 240 -----VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                VV    T N  I  L +NG   + + L   + +  C L +  +N LI+  C+ G 
Sbjct: 474 LLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGN 533

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + +  L ++++ K +  + V+YN+LI  L K  +++    L   M       D+ T+NT
Sbjct: 534 VDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNT 593

Query: 355 LM 356
           L+
Sbjct: 594 LI 595



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P +  T+N++I   C    + +A  L + +   G   N  T +TLI  L R G+    
Sbjct: 444 YKP-DICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDA 502

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           + L  +MV            ++  Y  LI  LC+D  VD++  L  EM +KGI  N +  
Sbjct: 503 ISLANDMVLHGCSL------DIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSY 556

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LCK  ++ +A  L + M+ + L P I TY  L+NG C +G ++ A+ L + +  
Sbjct: 557 NLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHN 616

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEA 216
           +    D+ +Y++LI+ +CK   + +A
Sbjct: 617 EDVHADIITYNILISWHCKARLLHDA 642



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 16/227 (7%)

Query: 133 ANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           A   LC+  +  EA  +L  M + G  P    Y  +++  C  G VN A  L D M   G
Sbjct: 178 AARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMG 237

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              DV +++ +++G C    + EA  +   M++ G             VP   T    + 
Sbjct: 238 CSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRG------------CVPNAITYGFLLK 285

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLC    V E   +   +     EL V +FN++I  C   G  + A+EL+  +  K    
Sbjct: 286 GLCLASQVEEARTMLGRVP----ELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPP 341

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           D   Y+ILIH L K G++     LL  ME+ G A  + T+  L+ SF
Sbjct: 342 DAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSF 388



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 89/214 (41%), Gaps = 18/214 (8%)

Query: 145 EANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA-RKGFMPDVFSYSV 202
            A  LL+ +  R  ++P   +Y  +L  +         ++L+  M  R    P  F++S+
Sbjct: 118 RALHLLDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSI 177

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
                C+    +EA+ + R M  +G             VP+T      I  LC  G V E
Sbjct: 178 AARALCRLGRADEALTMLRSMARHG------------CVPDTVLYQTVIHALCAQGGVNE 225

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
              L   + +  C   V  FN ++ G C  G    A+ L +++  +  V + + Y  L+ 
Sbjct: 226 AATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLK 285

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            L    Q+++   +L  + E    L+V  FNT++
Sbjct: 286 GLCLASQVEEARTMLGRVPE----LNVVLFNTVI 315


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 155/355 (43%), Gaps = 26/355 (7%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           L  F    R         T+N+LI+  C   ++R A + +  M   G RP+  T ++LI 
Sbjct: 113 LRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLIL 172

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G  RT  + +   L  +M      F G +  +   Y +LI+G C+   +D+  +LF EM 
Sbjct: 173 GYCRTQQLEVAHDLFCKM-----PFRG-FSQDAVSYAALIEGFCEAGRIDEALELFREMT 226

Query: 128 DKGINANTLLCKKTKLVEANR------LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
              +  +  L K   L +A R      +L+ M + G  P    Y  L++ +C   K   A
Sbjct: 227 QPDMYTHAALVKG--LCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEA 284

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             + + M   G MP V + ++++N YC            RE  ++G  ++F  M+     
Sbjct: 285 EKILNEMFDSGLMPCVVTCTIVVNAYC------------REGRMSGAVRVFESMRFKGCE 332

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P  +T N  + G C  G V + M L   +     E  V  +N LIRG C  G    A  L
Sbjct: 333 PNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRL 392

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +    L AD   YN+LI AL K G++ +   L   +E  G   +  TFNT++
Sbjct: 393 LRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVI 447



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 136/324 (41%), Gaps = 26/324 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT   ++  +C EG +  A ++ + M   GC PNV T + ++ G    G +   + L   
Sbjct: 301 VTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMAL--- 357

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            ++ M + G   +P+V  Y  LI G C D  +     L   M+  G+ A+          
Sbjct: 358 -LDQMRECG--VEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDA 414

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+ EA  L + +  RG+ P   T+  ++NG C  GK +VA    ++M   G+ PD
Sbjct: 415 LCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPD 474

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            ++YS  I   CK    +E +    EM+              +V P T    I I+ L  
Sbjct: 475 TYTYSPFIENLCKTKGSQEGLFFIDEMLQK------------DVKPSTVNYTIVINRLFN 522

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             +      ++  +    C   V  + + +R  C  G  + A  +  ++     + D +A
Sbjct: 523 ERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMA 582

Query: 317 YNILIHALGKEGQIKKENYLLLSM 340
           YN LI      GQ  +   +L  M
Sbjct: 583 YNTLIDGHTSIGQTDRAVTILKHM 606



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 16/223 (7%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC++  L  A R L LM++ G  P  FT+  L+ GYC   ++ VA  LF  M  +GF  D
Sbjct: 139 LCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQD 198

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY+ LI G+C+   ++EA+ + REM                  P+ +T    + GLC 
Sbjct: 199 AVSYAALIEGFCEAGRIDEALELFREM----------------TQPDMYTHAALVKGLCD 242

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G   E + +   ++          + +L+   C+    E A ++ N++    L+  VV 
Sbjct: 243 AGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVT 302

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             I+++A  +EG++     +  SM   GC  +V T+N ++  F
Sbjct: 303 CTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGF 345



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 152/387 (39%), Gaps = 53/387 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+N LI   C  G + +A  L   +   G RPN  T +T+I GL + G  ++     
Sbjct: 404 DQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFL 463

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M++        Y P+ + Y   I+ LCK +   +      EM  K +  +T+      
Sbjct: 464 ENMISAG------YAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVI 517

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L  +     A R+   M+ +G +P + TYT  +  YC  G+++ A  +   M +   +
Sbjct: 518 NRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTI 577

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM-----ILNGFK-------------------- 229
            D  +Y+ LI+G+      + A+ + + M     + N F                     
Sbjct: 578 VDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLK 637

Query: 230 --------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                         ++F  MK  +V     T    ++G  +   + EV  L   ++  N 
Sbjct: 638 ATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENL 697

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
            L  +I+N+L+   CK  ++  A  L   +     + +++ Y  L+  L  EGQ  +   
Sbjct: 698 PLNEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKE 757

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQK 362
           +  S        D   +  ++  F++K
Sbjct: 758 IFRSSRWKEYNTDEIVWKVIIDGFIRK 784



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 110/285 (38%), Gaps = 42/285 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ + ++ +C EG + +A  +V +M       +    +TLI G    G  +  + + + 
Sbjct: 546 VTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKH 605

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK----------------DLFMEMKD 128
           M       G    PN F +  L+  L + RL +                   +LF  MK 
Sbjct: 606 MT------GVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKK 659

Query: 129 KGI--NANTLLC------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
             +  +A T L       ++ +L E   L+ LM +  L      Y  L+N +C +   + 
Sbjct: 660 NSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSD 719

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A AL  SM   GF+P++  Y  L++G       + A            K+IF   +    
Sbjct: 720 AWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRA------------KEIFRSSRWKEY 767

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
             +     + IDG  + GH     ++   LE   C+   E +  L
Sbjct: 768 NTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETYAML 812


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 159/342 (46%), Gaps = 45/342 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EG +R A  +  ++  +G RP+V + 
Sbjct: 115 KYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSF 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M        G+ +P+V+ Y  LI+GLCK+         
Sbjct: 175 NTLMNGYIRLGDLDEGFRLKSAM-----HASGV-QPDVYTYSVLINGLCKE--------- 219

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L   M+  GL P   T+T L++G+C  G +++A+
Sbjct: 220 ------------------SKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAM 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
             +  M R+GF PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 262 ETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK------------P 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +   +     +   N  L    + +LI G C+ G    A ++ 
Sbjct: 310 DKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKML 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            ++    L  D   Y ++I+   K+G +K  + LL  M+ +G
Sbjct: 370 REMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDG 411



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 150/344 (43%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G + DA +  +            TC  ++    +     L    ++E++
Sbjct: 69  FSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKLVWGFYKEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+   CK+  +   + +F E+   G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M   G+ P ++TY+ L+NG C   K+N A  LF  M   G +P+  
Sbjct: 183 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CK  +++ AM   +EM+  GF             P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKTGSIDLAMETYKEMLRQGFS------------PDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A     ++  +N+  D VAY 
Sbjct: 291 DLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EGQ      +L  M   G   D  T+  ++  F +K
Sbjct: 351 ALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKK 394



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 99/202 (49%), Gaps = 15/202 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  A   FG  I     P N VTF +LI G C  G+I  A +  K+M   G  P++ T
Sbjct: 220 SKMNDANELFGEMIGNGLVP-NGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLIT 278

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI GL + G+    LK  Q++++ M   G   KP+   Y +LIDG CK+  ++    
Sbjct: 279 YNTLIYGLCKKGD----LKQAQDLIDEMSMKG--LKPDKITYTTLIDGSCKEGDLETALY 332

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
               M  + I  + +        LC++ + V+A ++L  M+  GL P   TYT ++N +C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFC 392

Query: 174 LVGKVNVAIALFDSMARKGFMP 195
             G V     L   M R G +P
Sbjct: 393 KKGDVKTGSKLLKEMQRDGHVP 414


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 169/381 (44%), Gaps = 38/381 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   +     P N +T+N++I G    G++    +L  +M   G +PN+ T + L+
Sbjct: 213 ALKVFDEMVDMGVVP-NWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLL 271

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +GL R G M+ T  L  EM +          P+ F Y  L DGL +         LF E 
Sbjct: 272 SGLCRAGRMDETRVLMDEMASHS------MFPDGFTYSILFDGLTRTGESRTMLSLFAES 325

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             KG+             LCK  K+ +A ++LE+++  GL P    Y  L+NGYC V  +
Sbjct: 326 LKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDL 385

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------- 230
             A  +F+ M  +   PD  +Y+ LING CK   V +A ++  EM  +G           
Sbjct: 386 RGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 445

Query: 231 ---------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                          + ++M+   +  +  +    +   CKNG + E + +   +   + 
Sbjct: 446 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 505

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
               +++NS+I    + G  E A  L  K+    + A +V YN+L+  L +  QI +   
Sbjct: 506 APNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE 565

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           L+ ++   G   DV ++NT++
Sbjct: 566 LIYTLRNQGLRPDVVSYNTII 586



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 177/378 (46%), Gaps = 37/378 (9%)

Query: 3   KVLGALMAFG------SFIRRCYR-----PLNDVTFNSLIKGFCMEGNIRDASQLVKKMA 51
           KV+ A +A G      + +RR  R     P +  ++N +I G    G   DA ++  +M 
Sbjct: 162 KVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMV 221

Query: 52  TFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC 111
             G  PN  T +T+I G  + G++    +L  +M++         KPN+  Y  L+ GLC
Sbjct: 222 DMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGP------KPNIVTYNVLLSGLC 275

Query: 112 KDRLVDQTKDLFMEMKDK-----GINANTLLCKKTKLVEANRLLELM---MQRGLNPVIF 163
           +   +D+T+ L  EM        G   + L    T+  E+  +L L    +++G+    +
Sbjct: 276 RAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAY 335

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           T + LLNG C  GKV  A  + + +   G +P    Y+ LINGYC+  +           
Sbjct: 336 TCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRD----------- 384

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
            L G   IF +MK  ++ P+  T N  I+GLCK   V +  +L   +E S  +  VE FN
Sbjct: 385 -LRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFN 443

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LI      G  E    + + +  K + +DV+++  ++ A  K G+I +   +L  M   
Sbjct: 444 TLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYK 503

Query: 344 GCALDVDTFNTLMISFLQ 361
             A +   +N+++ ++++
Sbjct: 504 DVAPNAQVYNSIIDAYIE 521



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 155/340 (45%), Gaps = 24/340 (7%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N L++     G   D       +   G RP+    + ++      G++++ L     MV 
Sbjct: 126 NLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA----MVR 181

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CK 139
            MG   G   P+ F Y  +I GL +         +F EM D G     I  NT++    K
Sbjct: 182 RMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVK 241

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
              L    RL + M+  G  P I TY  LL+G C  G+++    L D MA     PD F+
Sbjct: 242 GGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFT 301

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           YS+L +G  +          SR M+      +F E     V+   +TC+I ++GLCK+G 
Sbjct: 302 YSILFDGLTRTGE-------SRTML-----SLFAESLKKGVMLGAYTCSILLNGLCKDGK 349

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           V +  ++   L  +       I+N+LI G C+      A  +F ++  +++  D + YN 
Sbjct: 350 VAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNA 409

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           LI+ L K   + K   L++ ME++G    V+TFNTL+ ++
Sbjct: 410 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAY 449



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 149/350 (42%), Gaps = 37/350 (10%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           L+ G C +G +  A Q+++ +   G  P     +TLI G  +  ++     + ++M +  
Sbjct: 340 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 399

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---CKKT 141
                  +P+   Y +LI+GLCK  +V + +DL MEM+  G++      NTL+       
Sbjct: 400 ------IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAG 453

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           +L +   +L  M Q+G+   + ++  ++  +C  GK+  A+A+ D M  K   P+   Y+
Sbjct: 454 QLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYN 513

Query: 202 VLINGYCKNFNVEEAM--------------NVSREMILNGF---------KKIFNEMKLC 238
            +I+ Y ++ + E+A                V+  ++L G          +++   ++  
Sbjct: 514 SIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQ 573

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            + P+  + N  I   C  G   + +EL   +        +  +++L+      G     
Sbjct: 574 GLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDM 633

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             L+ ++  KN+      Y I++ A  +     K   L   M E G A D
Sbjct: 634 ECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 117/291 (40%), Gaps = 52/291 (17%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GA   F     R  RP + +T+N+LI G C    +  A  LV +M   G  P+V T +TL
Sbjct: 387 GAFCIFEQMKSRHIRP-DHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 445

Query: 66  ITGLRRTGNMNLTLKLHQEMV-----NGMGDFGGIYK----------------------- 97
           I      G +     +  +M      + +  FG + K                       
Sbjct: 446 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 505

Query: 98  -PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
            PN   Y S+ID   +    +Q   L  +MK+ G++A+ +        LC+ +++ EA  
Sbjct: 506 APNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE 565

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L+  +  +GL P + +Y  +++  C  G  + A+ L   M + G  P + +Y  L++   
Sbjct: 566 LIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALA 625

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL--CKN 257
               V +             + ++ +M   NV P +    I +D    C+N
Sbjct: 626 SAGRVHD------------MECLYQQMLHKNVEPSSSIYGIMVDAYVRCEN 664



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 25/197 (12%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + +   LL     VG+     A F  +   G  PD F+++ ++       +++ A+ +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 220 SREM----------------ILNGFK---------KIFNEMKLCNVVPETFTCNIFIDGL 254
            R M                ++ G           K+F+EM    VVP   T N  IDG 
Sbjct: 180 VRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGH 239

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K G +     L   +     +  +  +N L+ G C+ G  +    L ++++  ++  D 
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDG 299

Query: 315 VAYNILIHALGKEGQIK 331
             Y+IL   L + G+ +
Sbjct: 300 FTYSILFDGLTRTGESR 316



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 2/123 (1%)

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           ++C+ +P   +CN+ ++ L   G   +V   F  L  +        +N +++ C   G  
Sbjct: 114 EVCSPLPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDL 173

Query: 296 EIASELFNKL--SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           ++A  +  ++  S      D  +YN++I  L + G+      +   M + G   +  T+N
Sbjct: 174 DVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYN 233

Query: 354 TLM 356
           T++
Sbjct: 234 TMI 236


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 171/345 (49%), Gaps = 23/345 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V + ++I     +G + +A+ L+ +M   GC  +V T + L+ GL   G +    +L 
Sbjct: 211 DAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARL- 269

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-NTLL---C 138
              V+ M   G +  P+V  YG L+ GLC+ R  D+   +   + +  +   NT++    
Sbjct: 270 ---VDRMMTQGCM--PSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCL 324

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
            + KL  A  L E+M  +G  P + TY+ L++G C +G+   A+ + D M  KG  P++ 
Sbjct: 325 TEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIV 384

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +YS L++ +C+N   ++A  +  +M+  GF               +   N  I  LCK+G
Sbjct: 385 TYSTLLHSFCRNGMWDDARAMLDQMLAKGFSM------------NSQGYNGIIYALCKDG 432

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   ++   C+  +  +N++I   C   + E A  +F  L  + +VA+ + YN
Sbjct: 433 KLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYN 492

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            LIHAL + G+ ++   L   M  +GC LDV ++N L I  L KE
Sbjct: 493 TLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGL-IKALCKE 536



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 167/362 (46%), Gaps = 41/362 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN L+ G C  G +R+A++LV +M T GC P+V T   L+ GL RT   +    +    
Sbjct: 249 TFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAM---- 304

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                  G + + NV    ++I G   +  + +  +L+  M  KG   +          L
Sbjct: 305 ------LGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGL 358

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  +   A R+L+ M ++G  P I TY+ LL+ +C  G  + A A+ D M  KGF  + 
Sbjct: 359 CKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNS 418

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM--KLCN------------- 239
             Y+ +I   CK+  +++A  + +EM   G K     +N M   LCN             
Sbjct: 419 QGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRN 478

Query: 240 -----VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                VV    T N  I  L +NG   E + L   + +  C+L V  +N LI+  CK G 
Sbjct: 479 LIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGN 538

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + +  L  ++  K +  +  +YN+LI+ L K G+++    L   M   G   D+ T+NT
Sbjct: 539 VDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNT 598

Query: 355 LM 356
           L+
Sbjct: 599 LI 600



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 177/374 (47%), Gaps = 41/374 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V  N++I+G   EG +  A++L + M + GC P+V T   L+ GL + G     ++ 
Sbjct: 311 VNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVR- 369

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
              M++ M + G    PN+  Y +L+   C++ + D  + +  +M  KG + N+      
Sbjct: 370 ---MLDEMEEKG--CAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGI 424

Query: 136 --LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  KL +A RL++ M  +G  P I TY  ++   C    +  A  +F ++  +G 
Sbjct: 425 IYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGV 484

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
           + +  +Y+ LI+   +N   +E + ++ EM+L+G +                        
Sbjct: 485 VANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMA 544

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRG 288
           +  EM    + P  F+ N+ I+ LCK G V + +EL  + E+ N  L  +I  +N+LI G
Sbjct: 545 LLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALEL--SKEMLNQGLTPDIVTYNTLING 602

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            CK G    A  L  KL  +N+  D+V YNILI    K   +     LL      G   +
Sbjct: 603 LCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPN 662

Query: 349 VDTFNTLMISFLQK 362
             T+  ++ +F+++
Sbjct: 663 ERTWGMMVQNFVRQ 676



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 101/234 (43%), Gaps = 27/234 (11%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L   M++  + P  FT+       C +G+   A+AL   MAR G +PD   Y  +I+   
Sbjct: 164 LYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALV 223

Query: 209 KNFNVEEAMNVSREMILNG-----------------------FKKIFNEMKLCNVVPETF 245
               V EA  +  EM+L G                         ++ + M     +P   
Sbjct: 224 AQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVV 283

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T    + GLC+     E   +   L     E+ V + N++IRGC   G    A+EL+  +
Sbjct: 284 TYGFLLQGLCRTRQADEACAMLGRLP----EVNVVMLNTVIRGCLTEGKLARATELYEMM 339

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             K    DV  Y+IL+H L K G+      +L  MEE GCA ++ T++TL+ SF
Sbjct: 340 GSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSF 393



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 148/380 (38%), Gaps = 79/380 (20%)

Query: 16  RRCYR---PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           RR  R   P    TF    +  C  G   DA  L++ MA  GC P+              
Sbjct: 166 RRMLRDRVPPTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAV------------ 213

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
                   L+Q +++ +   GG+ +  +     L+ G   D  V+   DL +        
Sbjct: 214 --------LYQTVIHALVAQGGVAEAAMLLDEMLLMGCAAD--VNTFNDLVLG------- 256

Query: 133 ANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV----------------- 175
               LC   ++ EA RL++ MM +G  P + TY  LL G C                   
Sbjct: 257 ----LCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVN 312

Query: 176 --------------GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
                         GK+  A  L++ M  KG  PDV +YS+L++G CK      A+    
Sbjct: 313 VVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAV---- 368

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
                   ++ +EM+     P   T +  +   C+NG   +   +   +      +  + 
Sbjct: 369 --------RMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQG 420

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N +I   CK G  + A+ L  ++  +    D+  YN +I+ L     +++  ++  ++ 
Sbjct: 421 YNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLI 480

Query: 342 ENGCALDVDTFNTLMISFLQ 361
           E G   +  T+NTL+ + L+
Sbjct: 481 EEGVVANGITYNTLIHALLR 500


>gi|356520039|ref|XP_003528673.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 585

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 168/344 (48%), Gaps = 34/344 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V + +LI G C  G++R A +L   M   G   N  +C  L+ G  + G       +
Sbjct: 234 LNVVIYTTLIYGCCKSGDVRLAKKLFCTMDRLGLVANHHSCGVLMNGFFKQGLQREGFXM 293

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           ++ M        GI  PN + Y  +I   C  R+VD+  ++F EM++KGI    +     
Sbjct: 294 YENM-----KPSGIV-PNAYAYNCVISEYCNARMVDKALNVFAEMREKGIAYGVITYNXG 347

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LC+  K  EA +++  + + GL+P I TY  L+NG+C VGK++ A+ LF+ +   G  P
Sbjct: 348 GLCRGKKFGEAVKIVHQVNKVGLSPNIVTYNILINGFCDVGKIDTAVRLFNQLKSNGLSP 407

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIFNEMKLCNV- 240
            + +Y+ LI GY K  N+  A+++ +EM              +++ F ++    K C + 
Sbjct: 408 TLVTYNTLIAGYSKVENLAGALDLVKEMEERCIPPSKVTYXILIDAFARLNYTKKTCEMH 467

Query: 241 -------VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                  +      ++ I GLC NG++ E  +L  +L   + E    I+N++I G CK G
Sbjct: 468 SLMEKSGLVSDVXHSVLIHGLCMNGNMKEASKLLKSLGELHLEPNSVIYNTMIHGYCKEG 527

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               A  LFN++    +V +V ++   I  L ++ + ++   LL
Sbjct: 528 SSYRALRLFNEMVHSRMVPNVASFCSTIGLLCRDEKWQEAELLL 571



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 112/267 (41%), Gaps = 24/267 (8%)

Query: 91  DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--------KKTK 142
           +FG  +  NV  Y +LI G CK   V   K LF  M   G+ AN   C        K+  
Sbjct: 229 EFG--FSLNVVIYTTLIYGCCKSGDVRLAKKLFCTMDRLGLVANHHSCGVLMNGFFKQGL 286

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
             E   + E M   G+ P  + Y  +++ YC    V+ A+ +F  M  KG    V +Y+ 
Sbjct: 287 QREGFXMYENMKPSGIVPNAYAYNCVISEYCNARMVDKALNVFAEMREKGIAYGVITYNX 346

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
              G C+     EA+            KI +++    + P   T NI I+G C  G +  
Sbjct: 347 --GGLCRGKKFGEAV------------KIVHQVNKVGLSPNIVTYNILINGFCDVGKIDT 392

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            + LF  L+ +     +  +N+LI G  K      A +L  ++  + +    V Y ILI 
Sbjct: 393 AVRLFNQLKSNGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIPPSKVTYXILID 452

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDV 349
           A  +    KK   +   ME++G   DV
Sbjct: 453 AFARLNYTKKTCEMHSLMEKSGLVSDV 479



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 14/226 (6%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+   L++  RLL ++ + G +  +  YT L+ G C  G V +A  LF +M R G + + 
Sbjct: 212 CEAGDLMKGFRLLAMLEEFGFSLNVVIYTTLIYGCCKSGDVRLAKKLFCTMDRLGLVANH 271

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            S  VL+NG+ K         + RE    GF  ++  MK   +VP  +  N  I   C  
Sbjct: 272 HSCGVLMNGFFKQ-------GLQRE----GFX-MYENMKPSGIVPNAYAYNCVISEYCNA 319

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V + + +F  +        V  +N    G C+   F  A ++ ++++   L  ++V Y
Sbjct: 320 RMVDKALNVFAEMREKGIAYGVITYNX--GGLCRGKKFGEAVKIVHQVNKVGLSPNIVTY 377

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           NILI+     G+I     L   ++ NG +  + T+NTL+  + + E
Sbjct: 378 NILINGFCDVGKIDTAVRLFNQLKSNGLSPTLVTYNTLIAGYSKVE 423



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 3/130 (2%)

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +FNE K   VV + ++  I I G C+ G +++   L   LE     L V I+ +LI GCC
Sbjct: 189 VFNEFKR-KVVMDAYSFGIMIKGRCEAGDLMKGFRLLAMLEEFGFSLNVVIYTTLIYGCC 247

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL-SMEENGCALDV 349
           K G   +A +LF  +    LVA+  +  +L++   K+G +++E + +  +M+ +G   + 
Sbjct: 248 KSGDVRLAKKLFCTMDRLGLVANHHSCGVLMNGFFKQG-LQREGFXMYENMKPSGIVPNA 306

Query: 350 DTFNTLMISF 359
             +N ++  +
Sbjct: 307 YAYNCVISEY 316


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 183/420 (43%), Gaps = 75/420 (17%)

Query: 12  GSFIRRCYR--PLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           G  +RR +   P+ +V TFN +I   C EG + +A  L  +M   GC P+V T ++LI G
Sbjct: 185 GGLVRRLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDG 244

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
             + G++       +++V+ M   G     +V  Y +LI+   K   +++    F EMK 
Sbjct: 245 YGKCGDLEEV----EQLVSEMRKSG--CAADVVTYNALINCFSKFGRMEKAYSYFGEMKR 298

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +G+ AN +         CK+  + EA +L   M  RG+ P  FTYT L++G C  G+++ 
Sbjct: 299 QGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDD 358

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
           AI L D M  +G +P+V +Y+V+++G CK   V EA NV   M   G K           
Sbjct: 359 AIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIH 418

Query: 231 -------------IFNEMK-----------------------------------LCNVVP 242
                        + N+MK                                    C + P
Sbjct: 419 GHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRP 478

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
            T      +D L K G   E + L   +  S  +  V  + +LI G CK G    A   F
Sbjct: 479 NTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHF 538

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           NK+    L  +V AY  LI    K G + K  +L+  M + G +LD   + +L+  ++++
Sbjct: 539 NKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQ 598



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 154/329 (46%), Gaps = 28/329 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+  ++ G C EG + +A  ++  M   G + N     TLI G     N    L L 
Sbjct: 374 NVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLL 433

Query: 83  QEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +M N GM       + +V  YG+LI GLCKD+ VD+ K L  +M   G+  NT+     
Sbjct: 434 NQMKNKGM-------ELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTI 486

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L K  K  EA  LL  ++  G  P + TY  L++G C  G ++ AI+ F+ M   G 
Sbjct: 487 MDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGL 546

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V +Y+ LI+G+CK  ++ +AM++  EMI  G       M L  VV  +      IDG
Sbjct: 547 DPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKG-------MSLDKVVYTSL-----IDG 594

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             K  ++ +   L   +  S  +L +  +   I G C   + + A  + +++    +  D
Sbjct: 595 YMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPD 654

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEE 342
              YN LI    K G +++ + L   ME 
Sbjct: 655 KTVYNCLIRKYQKLGNMEEASSLQNEMES 683



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 156/380 (41%), Gaps = 61/380 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF++ +  FC EG +++A +L  +M   G  PN  T  +L+ G  + G ++  + L 
Sbjct: 304 NVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLL 363

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EMV+      G+  PNV  Y  ++DGLCK+  V +  ++   M+  G+ AN LL     
Sbjct: 364 DEMVHQ-----GLV-PNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLI 417

Query: 138 --------------------------------------CKKTKLVEANRLLELMMQRGLN 159
                                                 CK  K+ EA  LL  M   GL 
Sbjct: 418 HGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLR 477

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P    YT +++     GK + A+AL   +   GF P+V +Y  LI+G CK  ++ EA++ 
Sbjct: 478 PNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAIS- 536

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                       FN+M+   + P        IDG CK G + + M L   +      L  
Sbjct: 537 -----------HFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDK 585

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            ++ SLI G  K    + A  L  K+    L  D+  Y   I        +++   +L  
Sbjct: 586 VVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSE 645

Query: 340 MEENGCALDVDTFNTLMISF 359
           M   G   D   +N L+  +
Sbjct: 646 MIGTGITPDKTVYNCLIRKY 665



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 50/388 (12%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A +A G   RR   P      ++L+      G + DA + + ++      PN  TC+ ++
Sbjct: 122 AALALGP--RRSALP---SVVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHIL 176

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             L R     L  +L          F  +  PNVF +  +ID LCK+  + + + LF+ M
Sbjct: 177 LRLARNRQGGLVRRL----------FDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRM 226

Query: 127 KDKG-----INANTLLCKKTK---LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K  G     +  N+L+    K   L E  +L+  M + G    + TY  L+N +   G++
Sbjct: 227 KAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRM 286

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------- 230
             A + F  M R+G + +V ++S  ++ +CK   V+EAM +  +M + G           
Sbjct: 287 EKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSL 346

Query: 231 ---------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                          + +EM    +VP   T  + +DGLCK G V E   +   +E    
Sbjct: 347 VDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGV 406

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           +    ++ +LI G       E A +L N++  K +  DV  Y  LI  L K+ ++ +   
Sbjct: 407 KANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKS 466

Query: 336 LLLSMEENGCALDVDT--FNTLMISFLQ 361
           LL  M   GC L  +T  + T+M +  +
Sbjct: 467 LLHKMA--GCGLRPNTVIYTTIMDALFK 492


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 171/338 (50%), Gaps = 30/338 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN LI G C +G++   ++LV  M   GC PN  T +TLI GL   G +   + L   
Sbjct: 240 VTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDR 299

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL------- 136
           MV+          PNV  YG++I+GL K  R +D  + L + M+++G + N         
Sbjct: 300 MVSSK------CVPNVVTYGTIINGLVKQGRALDGARVLAL-MEERGYHVNEYVYSALIS 352

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            L K+ K  EA +L + M  +        Y+ +++G C  GK + A+ +   M      P
Sbjct: 353 GLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKP 412

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           + ++YS L+ G+ +  N  +A+ + ++M     K  F + ++C         ++ I GLC
Sbjct: 413 NAYTYSSLMKGFFEAGNGHKAIEMWKDMA----KHNFTQNEVCY--------SVLIHGLC 460

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK--NLVAD 313
           K+G V E M ++  +    C+  V  + S+I G    G+ E A +L+N++ C+  +   D
Sbjct: 461 KDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPD 520

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           VV YNIL++AL K+  I +   LL SM + GC  D+ T
Sbjct: 521 VVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVT 558



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 155/365 (42%), Gaps = 72/365 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +TFN +IK  C  G + DA Q+ + M    C+P+                        
Sbjct: 168 NVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPD------------------------ 203

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL- 136
                            V+ Y +L+DGLCK   +D+   L  EM+  G     +  N L 
Sbjct: 204 -----------------VYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLI 246

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCKK  L    +L++ M  +G  P   TY  L++G CL GK+  AI+L D M     +
Sbjct: 247 NGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCV 306

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           P+V +Y  +ING  K     +   V   M   G+                        ++
Sbjct: 307 PNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQL 366

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F EM +      T   +  IDGLC++G   E +E+   +  + C+     ++SL++G  +
Sbjct: 367 FKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFE 426

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A E++  ++  N   + V Y++LIH L K+G++K+   +   M   GC  DV  
Sbjct: 427 AGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVA 486

Query: 352 FNTLM 356
           + +++
Sbjct: 487 YGSMI 491



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 147/328 (44%), Gaps = 24/328 (7%)

Query: 43  ASQLVKKMA-TFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
           A  L  +MA  F C+  V + ++++  + + G     L+ +  ++   G  G    PNV 
Sbjct: 114 AVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVI---GAKGVNISPNVL 170

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
            +  +I  +CK  LVD    +F +M       +          LCK  ++ EA  LL+ M
Sbjct: 171 TFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEM 230

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
              G  P   T+  L+NG C  G +     L D+M  KG  P+  +Y+ LI+G C    +
Sbjct: 231 QIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKL 290

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           E+A++            + + M     VP   T    I+GL K G  L+   +   +E  
Sbjct: 291 EKAIS------------LLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEER 338

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
              +   ++++LI G  K G  + A +LF +++ K    + + Y+ +I  L ++G+  + 
Sbjct: 339 GYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEA 398

Query: 334 NYLLLSMEENGCALDVDTFNTLMISFLQ 361
             +L  M  N C  +  T+++LM  F +
Sbjct: 399 LEVLSEMTNNRCKPNAYTYSSLMKGFFE 426



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 129/281 (45%), Gaps = 39/281 (13%)

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL--- 158
           C+  +     K  L ++   LF  M      A    CK+T +   N +L +++Q GL   
Sbjct: 97  CFVVIFKAYGKAHLPEKAVGLFDRM------AYEFECKRT-VKSFNSVLNVIIQEGLFYR 149

Query: 159 ----------------NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                           +P + T+  ++   C VG V+ A+ +F  M      PDV++Y  
Sbjct: 150 ALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCT 209

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           L++G CK   ++EA+++  EM ++G          C   P TF  N+ I+GLCK G +  
Sbjct: 210 LMDGLCKADRIDEAVSLLDEMQIDG----------CFPSPVTF--NVLINGLCKKGDLAR 257

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
           V +L   + +  C      +N+LI G C  G  E A  L +++     V +VV Y  +I+
Sbjct: 258 VAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIIN 317

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            L K+G+      +L  MEE G  ++   ++ L IS L KE
Sbjct: 318 GLVKQGRALDGARVLALMEERGYHVNEYVYSAL-ISGLFKE 357



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 28/243 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N+  +++LI G   EG  ++A QL K+M    C  N      +I GL R G  +  L++
Sbjct: 342 VNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEV 401

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EM N         KPN + Y SL+ G  +     +  +++ +M       N +     
Sbjct: 402 LSEMTNNR------CKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVL 455

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM--ARK 191
              LCK  K+ EA  +   M+ +G  P +  Y  ++NG    G V  A+ L++ M     
Sbjct: 456 IHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEP 515

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
              PDV +Y++L+N  CK  ++  A+++   M+  G          C+  P+  TC IF+
Sbjct: 516 DSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRG----------CD--PDLVTCIIFL 563

Query: 252 DGL 254
             L
Sbjct: 564 RTL 566



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 33/189 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V ++ LI G C +G +++A  +  +M   GC+P+V    ++I GL   G +   L+L+
Sbjct: 448 NEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLY 507

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC---- 138
            EM+    D     +P+V  Y  L++ LCK   + +  DL   M D+G + + + C    
Sbjct: 508 NEMLCQEPD----SQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFL 563

Query: 139 -------------------------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
                                    K+ +++ A++++E+M+Q+ L P   T+T ++   C
Sbjct: 564 RTLREKLDPPQDGREFLDGLVVRLLKRQRVLGASKIVEVMLQKLLPPKPSTWTRVVEDLC 623

Query: 174 LVGKVNVAI 182
              KV  AI
Sbjct: 624 NPKKVQAAI 632


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 182/420 (43%), Gaps = 73/420 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F    +    P N VT+++LI G C  G + +A  L+++M   G  P   TC   I
Sbjct: 269 ALQVFNQMAKEGCEP-NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             L   G      +L  +M N   +      PNV+ Y +LI GLC   L+     LF  M
Sbjct: 328 IALCDMGCYEDAWRLFVDMKNKGCE------PNVYTYTALISGLCVSGLLKVAIGLFHRM 381

Query: 127 KDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G+  NT        +L +  ++  A  +L LM + G +P I TY  ++ GYC++G  
Sbjct: 382 SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDP 441

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREMI 224
             A+ + ++M ++G   ++ +Y+ +I GYC + N   A+ +              S   +
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 501

Query: 225 LNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           + GF KI         FNEM    + P   T    IDG CK+  +     L   ++ S C
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 276 ELFVEIFNSLIR-----------------------------------GCCKFGIFEIASE 300
              V+ +N LI                                    G CK G   +A E
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           +FNK+  +  + +++ Y+ LI ALG+EG++++   L   +E +G   D  T+  ++ +++
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 166/365 (45%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + +N++I   C +GN+ DA  ++KK+      P+  T  ++I G  R  +++  L++ 
Sbjct: 214 NLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVF 273

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANT----- 135
            +M     +      PN   Y +LI+GLC    V++  DL  EM   GI   A+T     
Sbjct: 274 NQMAKEGCE------PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC      +A RL   M  +G  P ++TYT L++G C+ G + VAI LF  M+R G  
Sbjct: 328 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF 387

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM---------------K 236
           P+  +Y+ LIN   +N  ++ A  V   M  NG       +NEM                
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 237 LCNVVPETFTCNI-----FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           + N++    + N+      I G C +G+    + +   +    C+     +  LI G CK
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               E A  LFN++    L  + V Y  LI    K+ ++     LL  M+ +GC  +V T
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567

Query: 352 FNTLM 356
           +N L+
Sbjct: 568 YNVLI 572



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 137/268 (51%), Gaps = 20/268 (7%)

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           +F Y +L+  L +  +     D +  M  +G+  N L        LCK   + +A  +++
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            + +  ++P  FTYT ++ G+C    ++ A+ +F+ MA++G  P+  +YS LING C + 
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG 299

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            V EA ++ REMIL+G            ++P   TC   I  LC  G   +   LF  ++
Sbjct: 300 RVNEAFDLIREMILHG------------ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
              CE  V  + +LI G C  G+ ++A  LF+++S   +  + V YN LI+ L +  +IK
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIK 407

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
               +L  M  NGC+ ++ T+N ++  +
Sbjct: 408 YAFVVLNLMGRNGCSPNIVTYNEMIKGY 435



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 177/412 (42%), Gaps = 66/412 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A++   + ++R +   N VT+N++IKG+C  GN   A +++  M   GC+P+  +   LI
Sbjct: 444 AMLVMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  +   M     L  EMV+      G+  PN   Y +LIDG CKD  +D    L   M
Sbjct: 503 CGFCKISKMESAFGLFNEMVDD-----GLC-PNEVTYTALIDGYCKDEKLDTATSLLEHM 556

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K  G   N          L K+     A  L ++M++ G+ P + TYT +++G C  G  
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 616

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---------- 228
           ++A+ +F+ M  +G +P++ +YS LI    +   VEEA N+  E+  +G           
Sbjct: 617 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKM 676

Query: 229 ----------KKIFN---EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL--FPTLEIS 273
                     +  FN    M      P  +T  + I GL KN ++L    L   P + + 
Sbjct: 677 IEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-KNEYLLADQRLAALPDV-VP 734

Query: 274 NCE------------------------LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           NC                         L V++ N+L+      G +  A+EL   +  + 
Sbjct: 735 NCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQG 794

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           L  D  AYN L+ +L +   +     +   M   GC + ++ +  L+ +  Q
Sbjct: 795 LCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQ 846


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 157/330 (47%), Gaps = 26/330 (7%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
             G+ I++ YR +  + F  L+K  C E    +A  +V ++M   GC P+V + + L+ G
Sbjct: 120 GLGNVIKKGYR-VEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKG 178

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L    E+++ M D GG   P+V  Y ++IDGL K+   D+    + EM +
Sbjct: 179 LCHESRSQEAL----ELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLE 234

Query: 129 KGI-----NANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI       NT+   LCK   + +A  +L  M++ G+ P   TY  +++GYC  G+   
Sbjct: 235 RGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKE 294

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           AI + + M   G  PD  +Y+ L++  CKN    EA  +   MI  G K           
Sbjct: 295 AIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLK----------- 343

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P   T +  + G    G ++E+ +L   +  +  +    +F+ LI  C K    ++A  
Sbjct: 344 -PNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMF 402

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           +F+K+  + L  DVV Y  LI  L K G++
Sbjct: 403 VFSKMRQQRLTPDVVTYGTLIDGLCKSGRV 432



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 128/284 (45%), Gaps = 63/284 (22%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           ++N L+KG C E   ++A +L+  MA  G  C P+V +  T+I GL + G+ +     + 
Sbjct: 171 SYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYH 230

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           EM+       GI  P+V  Y +++  LCK + +D+  D+   M   G+  + +       
Sbjct: 231 EMLER-----GIL-PDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVH 284

Query: 137 ------------------------------------LCKKTKLVEANRLLELMMQRGLNP 160
                                               LCK  + +EA ++L+ M++RGL P
Sbjct: 285 GYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKP 344

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            + TY+ LL+GY   G +     L D M R G  PD   +S+LI    K+ NV+ AM V 
Sbjct: 345 NVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFV- 403

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
                      F++M+   + P+  T    IDGLCK+G V + M
Sbjct: 404 -----------FSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDAM 436



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 119/280 (42%), Gaps = 23/280 (8%)

Query: 94  GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVE 145
           G   P +  YG LI   C+   +D        +  KG     +        LC + +   
Sbjct: 92  GAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSN 151

Query: 146 A-NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF--MPDVFSYSV 202
           A N +L  M + G  P +F+Y  LL G C   +   A+ L   MA  G    PDV SYS 
Sbjct: 152 AMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYST 211

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           +I+G  K  + ++A +   EM+  G            ++P+  T N  +  LCK   + +
Sbjct: 212 IIDGLFKEGDSDKAYSTYHEMLERG------------ILPDVVTYNTIVAALCKAQAMDK 259

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            M++   +  +        +NS++ G C  G  + A  +  K+    +  D V Y  L+ 
Sbjct: 260 AMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMD 319

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            L K G+  +   +L SM + G   +V T++TL+  +  K
Sbjct: 320 YLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATK 359



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 48/209 (22%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
            + P + TY  L+   C  G++++  A   ++ +KG+  +   ++ L+   C       A
Sbjct: 93  AVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNA 152

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           MN+           +   M      P  F+ NI                           
Sbjct: 153 MNI-----------VLRRMTELGCAPHVFSYNI--------------------------- 174

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLS--CKNLVADVVAYNILIHALGKEGQIKKEN 334
                   L++G C     + A EL + ++    +   DVV+Y+ +I  L KEG   K  
Sbjct: 175 --------LLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAY 226

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQKE 363
                M E G   DV T+NT++ +  + +
Sbjct: 227 STYHEMLERGILPDVVTYNTIVAALCKAQ 255


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 172/384 (44%), Gaps = 56/384 (14%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V  ++  +  C  G    A  ++++M + G  P+ +T   +I  L     +    +L
Sbjct: 185 LNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQL 244

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            QEM  NG+        P+V+ Y +LID  CK   ++Q ++ F EM+  G   N +    
Sbjct: 245 FQEMKRNGIA-------PDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTA 297

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K  K+ +AN + E+M+ +G  P I TYT L++G C  GK+  A  ++  M ++ 
Sbjct: 298 LIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKEN 357

Query: 193 FM-----------------PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-------- 227
                              P+VF+Y  L++G CK + V+EA ++ + M + G        
Sbjct: 358 VEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVY 417

Query: 228 ---------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                           +++F  M  C   P  +T +  ID L K+  +   +++   +  
Sbjct: 418 DALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLE 477

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
           ++C   V I+  +I G CK G  + A +L   +  K    +VV Y  +I   GK G+++K
Sbjct: 478 NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEK 537

Query: 333 ENYLLLSMEENGCALDVDTFNTLM 356
              LL  M   GCA +  T+  L+
Sbjct: 538 CLELLQQMSSKGCAPNFVTYRVLI 561



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 167/377 (44%), Gaps = 47/377 (12%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN-----MNLTLKL 81
           FNSL+  +C  G+   A +L+KKM   GC+P     + LI G+  +       ++L  K 
Sbjct: 115 FNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKA 174

Query: 82  HQEMVN------------------GMGDFGGIYK-----------PNVFCYGSLIDGLCK 112
           + EM+                   G+G F   Y            P+   Y  +I  LC 
Sbjct: 175 YGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCN 234

Query: 113 DRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFT 164
              V++   LF EMK  GI  +  +        CK   + +A    + M + G  P + T
Sbjct: 235 ASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVT 294

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           YT L++ Y    KV+ A  +++ M  KG  P++ +Y+ LI+G CK   +E+A  + + M 
Sbjct: 295 YTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMK 354

Query: 225 -----LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                +      F  +   +  P  FT    +DGLCK   V E  +L  ++ +  CE   
Sbjct: 355 KENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNH 414

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            ++++LI GCCK G  + A E+F  +       +V  Y+ LI  L K+ ++     +L  
Sbjct: 415 VVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSK 474

Query: 340 MEENGCALDVDTFNTLM 356
           M EN CA +V  +  ++
Sbjct: 475 MLENSCAPNVVIYTEMI 491



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 157/358 (43%), Gaps = 33/358 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI  +     +  A+++ + M + GC PN+ T   LI GL + G +    +++
Sbjct: 291 NVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIY 350

Query: 83  QEMVNGMGDF-----------GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
           + M     +            G   +PNVF YG+L+DGLCK   V + +DL   M  +G 
Sbjct: 351 KIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGC 410

Query: 132 NANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
             N ++        CK  KL EA  +   M++ G +P ++TY+ L++      ++++A+ 
Sbjct: 411 EPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALK 470

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           +   M      P+V  Y+ +I+G CK    +EA  +           +  E K CN  P 
Sbjct: 471 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKL----------MVMMEEKGCN--PN 518

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T    IDG  K+G V + +EL   +    C      +  LI  CC  G+ + A +L  
Sbjct: 519 VVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLE 578

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           ++        V  Y  +I    +E       YL   + EN        +  L+ +F++
Sbjct: 579 EMKQTYWPRHVAGYRKVIEGFNRE--FIASLYLSFEISENDSVPVAPVYRVLIDNFIK 634



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 150/335 (44%), Gaps = 48/335 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+ +L+ G C    +++A  L+K M+  GC PN    D LI G  + G ++      
Sbjct: 378 NVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEA---- 433

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QE+   M + G  Y PNV+ Y SLID L KD+ +D    +  +M +     N +      
Sbjct: 434 QEVFTTMLECG--YDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMI 491

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  K  EA +L+ +M ++G NP + TYT +++G+   G+V   + L   M+ KG  
Sbjct: 492 DGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCA 551

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIFN------- 233
           P+  +Y VLIN  C    ++EA  +  EM              ++ GF + F        
Sbjct: 552 PNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIASLYLSF 611

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL------FPTLEISNCELFVEIFNSLIR 287
           E+   + VP      + ID   K G +   +EL      F     +N  + + +  +L  
Sbjct: 612 EISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITLIENLSL 671

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
                  FE+ +++ ++ S   L       +IL+H
Sbjct: 672 AHKADKAFELYADMISRGSIPEL-------SILVH 699



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 154/364 (42%), Gaps = 48/364 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+  L+ G   +  +    +++  M T GC P+    ++L+    R+G+     KL 
Sbjct: 76  NVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLL 135

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR-----LVDQTKDLFMEMKDKGI------ 131
           ++MV          +P    Y  LI G+C        ++D  +  + EM + G+      
Sbjct: 136 KKMVQCGC------QPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVN 189

Query: 132 --NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
             N +  LC   K  +A  ++  MM +G  P   TY+ ++   C   KV  A  LF  M 
Sbjct: 190 ISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMK 249

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
           R G  PDV+ Y+ LI+ +CK   +E+A N             F+EM+     P   T   
Sbjct: 250 RNGIAPDVYVYTTLIDSFCKAGFIEQARN------------WFDEMERDGCAPNVVTYTA 297

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            I    K+  V +  E++  +    C   +  + +LI G CK G  E AS+++  +  +N
Sbjct: 298 LIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKEN 357

Query: 310 L----------VAD-------VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           +          V D       V  Y  L+  L K  Q+K+   LL SM   GC  +   +
Sbjct: 358 VEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVY 417

Query: 353 NTLM 356
           + L+
Sbjct: 418 DALI 421



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 135/357 (37%), Gaps = 73/357 (20%)

Query: 50  MATFGCRPNVTTCDTLITGLRRTGNMNLTLKL--HQEMVNGMGDFGGIYKPNVFCYGSLI 107
           M+T G R +  T       L ++G     L L   +E V           P+   Y  +I
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLEKEEFV-----------PDTVLYTKMI 49

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINANTL-----LC---KKTKLVEANRLLELMMQRGLN 159
            GLC+  L ++  D    M+      N L     LC    K KL    R+L +M+  G  
Sbjct: 50  SGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCY 109

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC----------- 208
           P    +  L++ YC  G    A  L   M + G  P    Y++LI G C           
Sbjct: 110 PSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLD 169

Query: 209 ---------------------KNFN--------VEEAMNVSREMILNGFKKIFNEMKLCN 239
                                 NF+         E+A NV REM+  GF           
Sbjct: 170 LAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGF----------- 218

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
            +P+T T +  I  LC    V +  +LF  ++ +     V ++ +LI   CK G  E A 
Sbjct: 219 -IPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQAR 277

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             F+++       +VV Y  LIHA  K  ++ K N +   M   GC  ++ T+  L+
Sbjct: 278 NWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALI 334



 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 9/120 (7%)

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE---IFNSLIRGCCKFGIFEIAS 299
           + FT   F   LCK+G   E + L    E      FV    ++  +I G C+  +FE A 
Sbjct: 9   DEFTLGCFAHSLCKSGKWREALSLLEKEE------FVPDTVLYTKMISGLCEASLFEEAM 62

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +   ++   + + +V+ Y IL+     + ++ +   +L  M   GC      FN+L+ ++
Sbjct: 63  DFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAY 122


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 172/347 (49%), Gaps = 26/347 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P+N  +F+ +I   C++     A   +++M     RPN     TL++GL + G     ++
Sbjct: 428 PINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVE 487

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
           L   ++      G  + PN+    +LI GLCK   + +T  L  +M ++G     I  NT
Sbjct: 488 LWCRLL------GKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNT 541

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+   CK+ K+ E   L E M+++G+ P I+T+  LL+G C   K++ A  L+    + G
Sbjct: 542 LISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNG 601

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           ++P+V++Y V+I+GYCK   VEE  N+  E+       +  +++L +VV      N  I 
Sbjct: 602 YVPNVYTYGVMIDGYCKANKVEEGENLLNEL-------VSKKLELNSVV-----YNSLIR 649

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
             C NG++     L   ++     L    ++SL+ G C  G+ + A  L +++  + L+ 
Sbjct: 650 AYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLP 709

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +VV Y  +I    K GQ+ K N +L  M  +    +  T+  ++  F
Sbjct: 710 NVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGF 756



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 165/371 (44%), Gaps = 49/371 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V +N+LI G+C  GNI +A ++   M + G  PN  T ++LI G  ++  +     + 
Sbjct: 360 NEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVL 419

Query: 83  QEMVN-----GMGDFGGI------------------------YKPNVFCYGSLIDGLCKD 113
           +EM+        G F  +                         +PN     +L+ GLCK 
Sbjct: 420 EEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKA 479

Query: 114 RLVDQTKDLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
               +  +L+  +  KG     + +N L   LCK   + E  +LL  M++RGL     TY
Sbjct: 480 GKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITY 539

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L++G C  GKV     L + M +KG  PD++++++L++G C    ++EA  +  E   
Sbjct: 540 NTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKK 599

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
           NG+            VP  +T  + IDG CK   V E   L   L     EL   ++NSL
Sbjct: 600 NGY------------VPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSL 647

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           IR  C  G    A  L + +  + ++     Y+ L+H L   G +    +LL  M + G 
Sbjct: 648 IRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGL 707

Query: 346 ALDVDTFNTLM 356
             +V  + T++
Sbjct: 708 LPNVVCYTTII 718



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 162/343 (47%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T++  I G      I +A+ ++K+M+  G  PN    +TLI G  + GN++  LK+  +
Sbjct: 327 ITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDD 386

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------L 136
           M++      GI  PN     SLI G CK   + Q +++  EM  +G+  N          
Sbjct: 387 MLS-----KGI-SPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINW 440

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC K + V A   +  M+ R L P     T L++G C  GK   A+ L+  +  KGF+P+
Sbjct: 441 LCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPN 500

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + + + LI+G CK  N++E + + R+M+  G            +V +  T N  I G CK
Sbjct: 501 IVTSNALIHGLCKAGNMQETLKLLRDMLERG------------LVFDRITYNTLISGCCK 548

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V E  EL   +     +  +  FN L+ G C     + AS L+++      V +V  
Sbjct: 549 EGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYT 608

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y ++I    K  ++++   LL  +      L+   +N+L+ ++
Sbjct: 609 YGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAY 651



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 154/338 (45%), Gaps = 26/338 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+++I  FC      DA  L  KM   G  PNV T + +I GL ++G ++   +  ++MV
Sbjct: 259 FSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMV 318

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------C 138
                      P++  Y   I+GL K   +D+   +  EM + G   N ++        C
Sbjct: 319 KEK------VSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYC 372

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   + EA ++ + M+ +G++P   T   L+ G+C   ++  A  + + M  +G   +  
Sbjct: 373 KMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQG 432

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           S+S++IN  C  F    A++  REM+L             N+ P        + GLCK G
Sbjct: 433 SFSMVINWLCLKFRFVTALHFIREMLLR------------NLRPNDGLLTTLVSGLCKAG 480

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              E +EL+  L        +   N+LI G CK G  +   +L   +  + LV D + YN
Sbjct: 481 KQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYN 540

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            LI    KEG++K+   L   M + G   D+ TFN L+
Sbjct: 541 TLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLL 578



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 157/357 (43%), Gaps = 61/357 (17%)

Query: 43  ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102
           A+ +   +A  G  P++ TC  L++ L +   +  + +++  +       GGI  P+V  
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFIC-----LGGII-PDVHL 258

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMM 154
           + ++I+  CK    D    LF +M+  G+  N +        LCK  +L EA R  E M+
Sbjct: 259 FSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMV 318

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           +  ++P + TY+  +NG   + K++ A  +   M+  GF+P+   Y+ LI+GYCK  N+ 
Sbjct: 319 KEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNIS 378

Query: 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH------VLEVM---- 264
           EA+ +  +M+  G            + P + T N  I G CK+        VLE M    
Sbjct: 379 EALKIRDDMLSKG------------ISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRG 426

Query: 265 -------------------------ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
                                         + + N      +  +L+ G CK G    A 
Sbjct: 427 LPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAV 486

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           EL+ +L  K  V ++V  N LIH L K G +++   LL  M E G   D  T+NTL+
Sbjct: 487 ELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLI 543



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 144/311 (46%), Gaps = 63/311 (20%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL- 81
           + +T+N+LI G C EG +++  +L ++M   G +P++ T + L+ GL     ++   +L 
Sbjct: 535 DRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLW 594

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
           H+   NG       Y PNV+ YG +IDG CK   V++ ++L  E+  K +  N+++    
Sbjct: 595 HECKKNG-------YVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSL 647

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C    +  A RL + M  RG+     TY+ L++G C +G V+ A  L D M ++G 
Sbjct: 648 IRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGL 707

Query: 194 MPDV-----------------------------------FSYSVLINGYCKNFNVEEAMN 218
           +P+V                                   F+Y+++I+G+CK    +EA  
Sbjct: 708 LPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEA-- 765

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                      K+ NEM    ++P+  T N F +GLCK G V E  ++   +      L 
Sbjct: 766 ----------AKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLD 815

Query: 279 VEIFNSLIRGC 289
              + +LI GC
Sbjct: 816 EITYTTLIDGC 826



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 105/213 (49%), Gaps = 15/213 (7%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P N  T+  +I G+C    + +   L+ ++ +     N    ++LI      GNMN  
Sbjct: 602 YVP-NVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAA 660

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN---- 134
            +L  +M +      G+   +   Y SL+ GLC   LVD  K L  EM+ +G+  N    
Sbjct: 661 FRLRDDMKSR-----GVLL-SCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCY 714

Query: 135 -TLLCKKTKLVEANRL---LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
            T++   +KL + N++   L+ M    ++P  FTYT +++G+C +GK   A  L + M  
Sbjct: 715 TTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTE 774

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           KG +PD  +Y+   NG CK   VEEA  V  EM
Sbjct: 775 KGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEM 807



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 12/218 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  +  L+ ++GL P + T T LL+      ++  +  ++D +   G +PDV  +S +IN
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
            +CK    ++A+             +F++M+   V P   T N  I GLCK+G + E   
Sbjct: 265 AFCKGHREDDAIG------------LFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYR 312

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
               +        +  ++  I G  K    + A+ +  ++S    V + V YN LI    
Sbjct: 313 FKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYC 372

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           K G I +   +   M   G + +  T N+L+  F + +
Sbjct: 373 KMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSD 410


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 169/369 (45%), Gaps = 36/369 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+  ++ SLI  F   G  R+A  + KKM   GC+P + T + ++      G M      
Sbjct: 206 LDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVF---GKMGTPWNK 262

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
              +V  M   G    P+ + Y +LI    +  L  +   +F EMK  G     +  N L
Sbjct: 263 ITSLVEKMKSDG--IAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNAL 320

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L    K  +  EA ++L  M   G +P I TY  L++ Y   G ++ A+ L + MA KG 
Sbjct: 321 LDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGT 380

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
            PDVF+Y+ L++G+ +   VE AMN+  EM   G K                       K
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMK 440

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           IF+E+ +C + P+  T N  +    +NG   EV  +F  ++ +      E FN+LI    
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYS 500

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           + G FE A  ++ ++    +  D+  YN ++ AL + G  ++   +L  ME+  C  +  
Sbjct: 501 RCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNEL 560

Query: 351 TFNTLMISF 359
           T+ +L+ ++
Sbjct: 561 TYCSLLHAY 569



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 124/298 (41%), Gaps = 37/298 (12%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN+LI  +   G+   A  + ++M   G  P+++T +T++  L R G    + K+  EM
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV- 144
            +G        KPN   Y SL+      + +     L  E+    I    +L K   LV 
Sbjct: 551 EDGRC------KPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVC 604

Query: 145 -------EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
                  EA R    + +RG +P I T   +++ Y     V  A  + D M  +GF P +
Sbjct: 605 SKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSM 664

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNE 234
            +Y+ L+  + ++ +  ++  + RE++  G K                       +IF+E
Sbjct: 665 ATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSE 724

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           M+   +VP+  T N FI     +    E + +   +    C      +NS++ G CK 
Sbjct: 725 MRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKL 782



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/395 (19%), Positives = 161/395 (40%), Gaps = 60/395 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLI  +  +G + +A +L  +MA  G +P+V T  TL++G  R G +   + + +E
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEE 409

Query: 85  MVNG------------------MGDFGGIYK-----------PNVFCYGSLIDGLCKDRL 115
           M N                    G F  + K           P++  + +L+    ++ +
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGM 469

Query: 116 VDQTKDLFMEMKDKGI-----NANTLLCKKTK---LVEANRLLELMMQRGLNPVIFTYTP 167
             +   +F EMK  G        NTL+   ++     +A  +   M+  G+ P + TY  
Sbjct: 470 DSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNT 529

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---- 223
           +L      G    +  +   M      P+  +Y  L++ Y     +    +++ E+    
Sbjct: 530 VLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGV 589

Query: 224 -------------------ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
                              +L   ++ F+E+K     P+  T N  +    +   V +  
Sbjct: 590 IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKAN 649

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           E+   ++       +  +NSL+    +   F  + E+  ++  K +  D+++YN +I+A 
Sbjct: 650 EVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAY 709

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +  +++  + +   M ++G   DV T+NT + S+
Sbjct: 710 CRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSY 744



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 116/268 (43%), Gaps = 32/268 (11%)

Query: 121 DLFMEMKD-KGINANT-------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           D FM+ KD + +  N+       +L K+ ++  A  L   + + G +  +++YT L++ +
Sbjct: 159 DWFMKQKDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAF 218

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN-------GYCKNFNVEEAMNVS----- 220
              G+   A+ +F  M  +G  P + +Y+V++N        + K  ++ E M        
Sbjct: 219 ANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPD 278

Query: 221 ------------REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
                       R  +     ++F EMK      +  T N  +D   K+    E M++  
Sbjct: 279 AYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLN 338

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +E++     +  +NSLI    + G+ + A EL N+++ K    DV  Y  L+    + G
Sbjct: 339 EMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAG 398

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
           +++    +   M   GC  ++ TFN  +
Sbjct: 399 KVESAMNIFEEMRNAGCKPNICTFNAFI 426



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 91/186 (48%), Gaps = 20/186 (10%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLIT--GLRR-TGNMNLTLKLHQEMVNGMGDFGGIYKP 98
           +A +   ++   G  P++TT +++++  G R+  G  N       E+++ M + G  + P
Sbjct: 612 EAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKAN-------EVLDYMKERG--FTP 662

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---CKKTKLVEANRLL 150
           ++  Y SL+    +     +++++  E+  KGI       NT++   C+ T++ +A+R+ 
Sbjct: 663 SMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIF 722

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             M   G+ P + TY   +  Y        AI +   M + G  P+  +Y+ +++GYCK 
Sbjct: 723 SEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKL 782

Query: 211 FNVEEA 216
              +EA
Sbjct: 783 NRKDEA 788



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +++N++I  +C    +RDAS++  +M   G  P+V T +T I            + + + 
Sbjct: 700 ISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRY 759

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           M+ +G        +PN   Y S++DG CK    D+ K LF+E
Sbjct: 760 MIKHGC-------RPNQNTYNSIVDGYCKLNRKDEAK-LFVE 793


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 170/350 (48%), Gaps = 26/350 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTF++LI   C  G      ++  +MA  GC P+V    T+I G+ +       L+
Sbjct: 249 PPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEER----LE 304

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-----GINANT 135
           + + ++N M  +G    PNV CY +L+ GLC     ++ + L  EM DK      +  N 
Sbjct: 305 VARGILNRMPSYG--LSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNI 362

Query: 136 L---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L   LC+   +     +LE M++ G  P + TYT ++NG+C  G ++ A+ L  SMA  G
Sbjct: 363 LVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACG 422

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+  SY++++ G C      +A  +  +MI  G          C   P TF  N  I+
Sbjct: 423 CRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQG----------CPPNPVTF--NTLIN 470

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK G V + +EL   + ++ C   +  ++++I G  K G  + A EL N +  K +  
Sbjct: 471 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSP 530

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + + Y+ +  AL  EG+I K   +  ++++     D   +N ++ S  ++
Sbjct: 531 NTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKR 580



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 156/339 (46%), Gaps = 26/339 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N++++G CM         L+++M   GC PN+ T  TLI  L R G      ++H +
Sbjct: 218 VSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQ 277

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M     + G    P+V  Y ++IDG+CK+  ++  + +   M   G++ N +        
Sbjct: 278 M----AEHG--CAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKG 331

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +  EA  LL  M  +       T+  L++  C  G V+  I + + M   G MPD
Sbjct: 332 LCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPD 391

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ +ING+CK   ++EA+             +   M  C   P T +  I + GLC 
Sbjct: 392 VITYTTVINGFCKEGLIDEAV------------MLLRSMAACGCRPNTVSYTIVLKGLCS 439

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
               ++  EL   +    C      FN+LI   CK G+ E A EL  ++       D+++
Sbjct: 440 AERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 499

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           Y+ +I  LGK G   +   LL  M + G + +   ++++
Sbjct: 500 YSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSI 538



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 150/330 (45%), Gaps = 26/330 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +N+L+KG C      +A  L+ +M    C  +  T + L+  L + G ++  +++ 
Sbjct: 321 NVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVL 380

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M+    + G +  P+V  Y ++I+G CK+ L+D+   L   M   G   NT+      
Sbjct: 381 EQML----EHGCM--PDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVL 434

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC   + V+A  L+  M+Q+G  P   T+  L+N  C  G V  AI L   M   G  
Sbjct: 435 KGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 494

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ SYS +I+G  K  N +EA+ +   M+  G              P T   +     L
Sbjct: 495 PDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMS------------PNTIIYSSIASAL 542

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
              G + +V+++F  ++ +       ++N++I   CK G  + A E    +     V + 
Sbjct: 543 SGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNE 602

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENG 344
             Y ILI  L  EG +K+   +L  +   G
Sbjct: 603 STYTILIRGLASEGFVKEAQEILTELCSKG 632



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 164/341 (48%), Gaps = 33/341 (9%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKM-ATFGCRPNVTTCDTLITGL---RRTGNMNLTLKLHQ 83
           N +++  C +G + +A +L++ +  +FGC P+V + + ++ GL   RR G++     L +
Sbjct: 185 NLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQ---DLME 241

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------ 137
           EMV           PN+  + +LI  LC++ L ++  ++  +M + G   +  +      
Sbjct: 242 EMV------AAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIID 295

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             CK+ +L  A  +L  M   GL+P +  Y  LL G C   +   A  L   M  K    
Sbjct: 296 GVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPL 355

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D  ++++L++  C+N  V+  + V  +M+ +G             +P+  T    I+G C
Sbjct: 356 DDVTFNILVDFLCQNGLVDRVIEVLEQMLEHG------------CMPDVITYTTVINGFC 403

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G + E + L  ++    C      +  +++G C    +  A EL +++  +    + V
Sbjct: 404 KEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPV 463

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +N LI+ L K+G +++   LL  M  NGC+ D+ +++T++
Sbjct: 464 TFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 504



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 13/205 (6%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P  +TY PL+   C  G++  A+A+ D MAR+G  P    Y V +   C+      A+ V
Sbjct: 109 PNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGV 168

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-NCELF 278
            R++   G          C +  +   CN+ +  +C  G V E + L   L  S  CE  
Sbjct: 169 LRDLHGRG----------CAL--DVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPD 216

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           V  +N+++RG C    +    +L  ++       ++V ++ LI  L + G  ++ + +  
Sbjct: 217 VVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHA 276

Query: 339 SMEENGCALDVDTFNTLMISFLQKE 363
            M E+GCA DV  + T++    ++E
Sbjct: 277 QMAEHGCAPDVRMYATIIDGVCKEE 301



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 142/347 (40%), Gaps = 58/347 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD-TLITGLRRTGNMNLTLKL 81
           N  T+  L++  C  G I DA  ++  MA  GC P       TL    R +G        
Sbjct: 110 NAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASG-------- 161

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLID-GLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
            +  V  + D  G         G  +D G C   LV Q                  +C +
Sbjct: 162 FRGAVGVLRDLHG--------RGCALDVGNCN--LVLQA-----------------VCDQ 194

Query: 141 TKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             + EA RLL +L+   G  P + +Y  +L G C+  +      L + M   G  P++ +
Sbjct: 195 GPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVT 254

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           +S LI   C+N   E    V  +M  +G              P+       IDG+CK   
Sbjct: 255 FSTLIGHLCRNGLFERVHEVHAQMAEHG------------CAPDVRMYATIIDGVCKEER 302

Query: 260 VLEV----MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
            LEV    +   P+  +S     V  +N+L++G C    +E A  L  ++  K+   D V
Sbjct: 303 -LEVARGILNRMPSYGLSP---NVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDV 358

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +NIL+  L + G + +   +L  M E+GC  DV T+ T++  F ++
Sbjct: 359 TFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKE 405



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 110/272 (40%), Gaps = 22/272 (8%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRL 149
           PN + Y  L+  LC    +     +  +M  +G      +        C+ +    A  +
Sbjct: 109 PNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGV 168

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF-DSMARKGFMPDVFSYSVLINGYC 208
           L  +  RG    +     +L   C  G V+ A+ L  D +   G  PDV SY+ ++ G C
Sbjct: 169 LRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLC 228

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
                    ++  EM+  G              P   T +  I  LC+NG    V E+  
Sbjct: 229 MARRWGHVQDLMEEMVAAGCP------------PNIVTFSTLIGHLCRNGLFERVHEVHA 276

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +    C   V ++ ++I G CK    E+A  + N++    L  +VV YN L+  L    
Sbjct: 277 QMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSAD 336

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           + ++   LL  M +  C LD  TFN +++ FL
Sbjct: 337 RWEEAEGLLAEMFDKDCPLDDVTFN-ILVDFL 367



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 35/208 (16%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTFN+LI   C +G +  A +L+K+M   GC P++ +  T+I GL + GN +  L+
Sbjct: 459 PPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALE 518

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139
           L   MV  GM        PN   Y S+   L  +  +++   +F  ++D  + ++ +L  
Sbjct: 519 LLNVMVKKGM-------SPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVL-- 569

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
                                    Y  +++  C  G+ + AI     M   G +P+  +
Sbjct: 570 -------------------------YNAVISSLCKRGETDRAIEFLAYMVSSGCVPNEST 604

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNG 227
           Y++LI G      V+EA  +  E+   G
Sbjct: 605 YTILIRGLASEGFVKEAQEILTELCSKG 632


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 168/353 (47%), Gaps = 25/353 (7%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C + +N     SL+KG+CM+GN+R A  LV +++  G  PN  T   LI G  + GN+  
Sbjct: 139 CGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEK 198

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI----NA 133
             + + EM        GI + +V+   S+++G  K +       +F +  + G+      
Sbjct: 199 AFEFYSEMKTK-----GI-RSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTF 252

Query: 134 NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           NTLL   CK+ K+ EA  L + ++ +G++P + +Y  ++ G+C    +N A  ++  M  
Sbjct: 253 NTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLD 312

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            GF P+  ++++L++GY K  ++E A +            IF+ MK  N++P   T  I 
Sbjct: 313 NGFTPNAVTFTILMDGYFKKGDIENAFS------------IFHRMKDANILPTDTTLGII 360

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           I GLCK G   E  +LF              +N++I G  K G   +AS ++ ++    +
Sbjct: 361 IKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGI 420

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               V Y  LI    K   I     LL  M+  G  +D+  + TL+  F ++ 
Sbjct: 421 TPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRR 473



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 166/384 (43%), Gaps = 63/384 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TFN+L+   C EG + +A  L  ++   G  PNV + + +I G  R  N+N   K++
Sbjct: 248 NVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVY 307

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTL--- 136
           +EM+ NG       + PN   +  L+DG  K   ++    +F  MKD  I     TL   
Sbjct: 308 KEMLDNG-------FTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGII 360

Query: 137 ---LCKKTKLVE-----------------------------------ANRLLELMMQRGL 158
              LCK  +  E                                   A+ +   M + G+
Sbjct: 361 IKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGI 420

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P   TYT L++G+C    +++A+ L + M RKG   D+ +Y  LI+G+CK  +++ A  
Sbjct: 421 TPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSA-- 478

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                      ++ NE++   + P  F  N  I G     +V E ++L+  +        
Sbjct: 479 ----------HELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCD 528

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           ++ + SLI G  K G    AS++  ++  K ++ D  A+ +LI+ L  +GQ +    +L 
Sbjct: 529 LKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILE 588

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            M        V  +NTL+    ++
Sbjct: 589 DMNGKNMIPSVLIYNTLIAGHFKE 612



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 26/308 (8%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           D T   +IKG C  G   +   L  K  + G  P     +T+I G  + GN+NL   +++
Sbjct: 354 DTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYR 413

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL- 137
           EM        GI  P+   Y SLIDG CK   +D    L  +MK KG+  +     TL+ 
Sbjct: 414 EMCEV-----GI-TPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLID 467

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             CK+  +  A+ LL  +   GL+P  F Y  ++ G+  +  V  AI L+  M  +G   
Sbjct: 468 GFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPC 527

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D+ +Y+ LI+G  K+  +  A ++  EM+  G            ++P+     + I+GLC
Sbjct: 528 DLKTYTSLIDGLLKSGRLLYASDIHTEMLSKG------------ILPDDRAHTVLINGLC 575

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
             G      ++   +   N    V I+N+LI G  K G  + A  L +++  + LV D +
Sbjct: 576 NKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNI 635

Query: 316 AYNILIHA 323
            Y+IL++ 
Sbjct: 636 TYDILVNG 643



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 62/286 (21%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F  F+ + + P   + +N++I GF  EGNI  AS + ++M   G  P+  T  +LI G  
Sbjct: 377 FNKFVSQGFVP-TCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFC 435

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           +  N++L LKL    +N M   G   K ++  YG+LIDG CK R +    +L  E++  G
Sbjct: 436 KGNNIDLALKL----LNDMKRKG--LKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAG 489

Query: 131 INANTL-------------------------------------------LCKKTKLVEAN 147
           ++ N                                             L K  +L+ A+
Sbjct: 490 LSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYAS 549

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +   M+ +G+ P    +T L+NG C  G+   A  + + M  K  +P V  Y+ LI G+
Sbjct: 550 DIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGH 609

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            K  N++EA  +  EM+  G            +VP+  T +I ++G
Sbjct: 610 FKEGNLQEAFRLHDEMLDRG------------LVPDNITYDILVNG 643



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 15/229 (6%)

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           T   K+  + EA RL + M+  G +  +   T L+ GYC+ G +  A+ L + ++  G +
Sbjct: 118 TACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLV 177

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +YSVLI+G CKN N+E+A             + ++EMK   +    ++ N  ++G 
Sbjct: 178 PNKVTYSVLIDGCCKNGNIEKAF------------EFYSEMKTKGIRSSVYSLNSILEGY 225

Query: 255 CKNGHVLEVMELF-PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            K         +F   LE     +F   FN+L+   CK G    A  L++++  K +  +
Sbjct: 226 LKCQSWQNAFTMFNDALESGLANVFT--FNTLLSWLCKEGKMNEACNLWDEVIAKGISPN 283

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           VV+YN +I    ++  I     +   M +NG   +  TF  LM  + +K
Sbjct: 284 VVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKK 332


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 157/339 (46%), Gaps = 30/339 (8%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N  +   C    + DA Q+V+KM   G  P+V T  T+++ L      +  + L +EMV 
Sbjct: 269 NIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVR 328

Query: 88  -GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------C 138
            G+       KP+V   G+LI GLCK++ VD+  +L   M    I  N  +         
Sbjct: 329 RGL-------KPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFW 381

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   + +A + +  M + G  P + TY  LLN YC +G  + A  L   M   G  PD +
Sbjct: 382 RAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRY 441

Query: 199 SYSVLINGYCKNFNVEEAMN-VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           SY++L+ G CK   +++A   VS  M + GF         C++V    +CNI ID  C+ 
Sbjct: 442 SYNILLKGLCKAHQLDKAFAFVSDHMEVGGF---------CDIV----SCNILIDAFCRA 488

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V   + LF  +     +     +  LI G    G   +A ELF+++    +V +V  Y
Sbjct: 489 KKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVY 548

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           NI++H L K G  K    +   M +   + D  TFNTL+
Sbjct: 549 NIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLI 587



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 153/367 (41%), Gaps = 35/367 (9%)

Query: 2   SKVLGALMAFG-SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           S+ LG + + G +F R  YR         L+ G+   G      +   +M T GCR    
Sbjct: 145 SEFLGRVRSQGVAFHRSLYR--------VLLAGYARAGKFDSVIETFDEMVTSGCREFGV 196

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
             +  I  + +    N    L ++  N     G    P  F Y   I  LC+   ++  +
Sbjct: 197 DYNRFIGVMIK----NCCFDLVEKYYNMALAKGFCLTP--FTYSRWITALCQSNRIELVE 250

Query: 121 DLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L  +M   G   +          LC   +L +A +++E M  +G  P + TYT +++  
Sbjct: 251 ELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCL 310

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C   + + A+ L++ M R+G  PDV +   LI G CKN  V+EA  ++  M+        
Sbjct: 311 CDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRML-------- 362

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                 ++       N  I G  + G + +  +    ++ + CE  V  +N L+   C  
Sbjct: 363 ----TLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSI 418

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G+ + A  L  K+    +  D  +YNIL+  L K  Q+ K    +    E G   D+ + 
Sbjct: 419 GMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSC 478

Query: 353 NTLMISF 359
           N L+ +F
Sbjct: 479 NILIDAF 485



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 137/311 (44%), Gaps = 26/311 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN   +N+LI GF   G+I  A + V  M   GC P+V T + L+      G  +    L
Sbjct: 368 LNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENL 427

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
            ++M     +  G+  P+ + Y  L+ GLCK   +D+      +  + G     ++ N L
Sbjct: 428 IRKM-----EMSGV-NPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNIL 481

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   C+  K+  A  L + M  +G+     TY  L+NG   +G  N+A  LFD M     
Sbjct: 482 IDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKI 541

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P+V  Y+++++  CK  + + A            +KIF +M    V P+T T N  I  
Sbjct: 542 VPNVNVYNIMLHNLCKVGHFKHA------------QKIFWQMTQKEVSPDTVTFNTLIYW 589

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           L K+   +E ++LF  +     E     F  +I G    G   +A E++  +    ++ D
Sbjct: 590 LGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGIILD 649

Query: 314 VVAYNILIHAL 324
                 LI  L
Sbjct: 650 RDVSERLISVL 660


>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
          Length = 665

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 157/339 (46%), Gaps = 30/339 (8%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N  +   C    + DA Q+V+KM   G  P+V T  T+++ L      +  + L +EMV 
Sbjct: 269 NIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVR 328

Query: 88  -GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------C 138
            G+       KP+V   G+LI GLCK++ VD+  +L   M    I  N  +         
Sbjct: 329 RGL-------KPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFW 381

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   + +A + +  M + G  P + TY  LLN YC +G  + A  L   M   G  PD +
Sbjct: 382 RAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRY 441

Query: 199 SYSVLINGYCKNFNVEEAMN-VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           SY++L+ G CK   +++A   VS  M + GF         C++V    +CNI ID  C+ 
Sbjct: 442 SYNILLKGLCKAHQLDKAFAFVSDHMEVGGF---------CDIV----SCNILIDAFCRA 488

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V   + LF  +     +     +  LI G    G   +A ELF+++    +V +V  Y
Sbjct: 489 KKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVY 548

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           NI++H L K G  K    +   M +   + D  TFNTL+
Sbjct: 549 NIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLI 587



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 158/359 (44%), Gaps = 29/359 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  +   +RR  +P + V   +LI G C    + +A +L  +M T   + NV+  + LI
Sbjct: 319 AVGLWEEMVRRGLKP-DVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALI 377

Query: 67  TGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +G  R G++    K    M  NG        +P+V  Y  L++  C   + D+ ++L  +
Sbjct: 378 SGFWRAGSIEKAYKTVSFMQRNGC-------EPDVVTYNILLNHYCSIGMTDKAENLIRK 430

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M+  G+N +          LCK  +L +A   +   M+ G    I +   L++ +C   K
Sbjct: 431 MEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKK 490

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           VN A+ LF  M  KG   D  +Y +LING    F +  + N++ E+        F++M  
Sbjct: 491 VNSALNLFKEMGYKGIQADAVTYGILINGL---FGIGYS-NLAEEL--------FDQMLN 538

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             +VP     NI +  LCK GH     ++F  +           FN+LI    K      
Sbjct: 539 TKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVE 598

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A +LF ++  K +  D + +  +I  L  EG+      +   M ENG  LD D    L+
Sbjct: 599 ALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGIILDRDVSERLI 657



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 142/341 (41%), Gaps = 26/341 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +  L+ G+   G      +   +M T GCR      +  I  + +    N    L ++  
Sbjct: 163 YRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGVMIK----NCCFDLVEKYY 218

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLC 138
           N     G    P  F Y   I  LC+   ++  ++L  +M   G   +          LC
Sbjct: 219 NMALAKGFCLTP--FTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLC 276

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
              +L +A +++E M  +G  P + TYT +++  C   + + A+ L++ M R+G  PDV 
Sbjct: 277 GHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVV 336

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +   LI G CKN  V+EA  ++  M+              ++       N  I G  + G
Sbjct: 337 ACGALIFGLCKNQKVDEAFELASRML------------TLDIQLNVSIYNALISGFWRAG 384

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +    ++ + CE  V  +N L+   C  G+ + A  L  K+    +  D  +YN
Sbjct: 385 SIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYN 444

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           IL+  L K  Q+ K    +    E G   D+ + N L+ +F
Sbjct: 445 ILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAF 485


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 163/354 (46%), Gaps = 45/354 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+  + 
Sbjct: 121 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSY 180

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G ++   +L   M+       G+ +P+V+ Y  LI+GL K+  +D   +L
Sbjct: 181 NTLMNGYIRLGVLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLSKESKMDDADEL 234

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           F E                           M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 235 FDE---------------------------MLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  +M   G K            P
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLK------------P 315

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L   ++ +LI G C+ G    A ++ 
Sbjct: 316 DKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKML 375

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T+N LM
Sbjct: 376 REMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEIL 134

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF-----MEMKDKGINANTLLCKKT 141
                    Y  +++ +  L+   CKD  +   + +F       ++   ++ NTL+    
Sbjct: 135 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYI 188

Query: 142 KL---VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +L    E  RL   M+  G+ P ++TY+ L+NG     K++ A  LFD M  KG +P+  
Sbjct: 189 RLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGV 248

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK G
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNTLIYGLCKKG 296

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   +     +     + +LI GCCK G  + A E   ++  +N+  D V Y 
Sbjct: 297 DLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYT 356

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKK 400



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 14/192 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD----LKQA 301

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++++ M   G   KP+   Y +LIDG CK+  +D   +    M  + I  + +      
Sbjct: 302 HDLIDDMSRKG--LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALI 359

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+  GLNP   TYT ++N +C  G V     L   M R G +
Sbjct: 360 SGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 195 PDVFSYSVLING 206
           P V +Y+VL+NG
Sbjct: 420 PSVVTYNVLMNG 431


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 173/403 (42%), Gaps = 72/403 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLI G+   G++ + + L  +M   GC P++ T + LI    +   M    +   E
Sbjct: 266 VTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSE 325

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M N      G+ KPNV  Y +LID  CK+ ++     L  +M+  G+  N          
Sbjct: 326 MKNN-----GL-KPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDA 379

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   L EA +LL  M+Q G+   I TYT LL+G C  G++  A  +F SM + G  P+
Sbjct: 380 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 439

Query: 197 VFSYSVLINGYCKNFNVEEAM---------NVSREMILNG-------------------- 227
              Y+ L++GY K   +E+AM         N+  ++IL G                    
Sbjct: 440 QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILE 499

Query: 228 ---------------------FKK--------IFNEMKLCNVVPETFTCNIFIDGLCKNG 258
                                FK          F EM+   V     T  + IDGLC+ G
Sbjct: 500 EMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAG 559

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            V   ++ F  +     +  V ++ SLI G C     E A +LF+++ C+ +  D+ A+ 
Sbjct: 560 IVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFT 619

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            LI    K G +++   L+  M E     D+  + +L+  F Q
Sbjct: 620 ALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQ 662



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 156/338 (46%), Gaps = 26/338 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN VT+ +L+ G C  G + +A ++ + M   G  PN      L+ G  +   M   +K+
Sbjct: 403 LNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKI 462

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--- 138
            ++M           KP++  YGS+I G C  R +++TK +  EMK +GI+AN ++    
Sbjct: 463 LKQMTECN------IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTI 516

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  K  +A    + M   G+   I TY  L++G C  G V +A+  F  M   G 
Sbjct: 517 IDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGL 576

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V  Y+ LI+G C N  +E A            KK+F+EM+   + P+       IDG
Sbjct: 577 QPNVAVYTSLIDGLCXNNCIESA------------KKLFDEMQCRGMTPDITAFTALIDG 624

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             K+G++ E + L   +     E  + ++ SL+ G  + G    A + FN++  K ++ +
Sbjct: 625 NLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPE 684

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            V    L+    K GQ+ +   L   ME    + + D 
Sbjct: 685 EVLCICLLREYYKRGQLDEAIELKNEMERMAYSFEFDA 722



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 163/391 (41%), Gaps = 60/391 (15%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N +I   C EG++ ++ +L  +M   G  P+V T ++LI G  + G++     L  EM
Sbjct: 232 TYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM 291

Query: 86  -----VNGMGDFGGI------------------------YKPNVFCYGSLIDGLCKDRLV 116
                V  +  + G+                         KPNV  Y +LID  CK+ ++
Sbjct: 292 KDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMM 351

Query: 117 DQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
                L  +M+  G+  N           CK   L EA +LL  M+Q G+   I TYT L
Sbjct: 352 QGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTAL 411

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM---------NV 219
           L+G C  G++  A  +F SM + G  P+   Y+ L++GY K   +E+AM         N+
Sbjct: 412 LDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNI 471

Query: 220 SREMILNG--------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
             ++IL G               K I  EMK   +          ID   K G   + + 
Sbjct: 472 KPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALN 531

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
            F  ++    E  +  +  LI G C+ GI E+A + F ++    L  +V  Y  LI  L 
Sbjct: 532 FFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLC 591

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               I+    L   M+  G   D+  F  L+
Sbjct: 592 XNNCIESAKKLFDEMQCRGMTPDITAFTALI 622



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 155/338 (45%), Gaps = 26/338 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ L   F   G + +A++   +M  F   P   +C+ L+  L ++GN  L  K   +M+
Sbjct: 163 FDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMI 222

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                 G    P+VF Y  +ID LCK+  ++ ++ LF++M++ G++      N+L+    
Sbjct: 223 ------GAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYG 276

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L E   L   M   G  P I TY  L+N YC   K+  A   F  M   G  P+V 
Sbjct: 277 KVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVV 336

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +YS LI+ +CK            E ++ G  K+  +M+   ++P  FT    ID  CK G
Sbjct: 337 TYSTLIDAFCK------------EGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAG 384

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           ++ E  +L   +  +  +L +  + +L+ G CK G    A E+F  +    +  +   Y 
Sbjct: 385 NLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYT 444

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            L+H   K  +++    +L  M E     D+  + +++
Sbjct: 445 ALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSII 482



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%)

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           +K FN+M    + P  FT N+ ID LCK G +     LF  +        V  +NSLI G
Sbjct: 215 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG 274

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K G  E  + LFN++     V D++ YN LI+   K  ++ +       M+ NG   +
Sbjct: 275 YGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPN 334

Query: 349 VDTFNTLMISF 359
           V T++TL+ +F
Sbjct: 335 VVTYSTLIDAF 345


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 173/390 (44%), Gaps = 53/390 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + +T+  LI+G C  G ++ A  L ++M   G RP V TC  L+  L ++GN+ L L+  
Sbjct: 124 DSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYF 183

Query: 83  QEM------------VNGM-------------GDFGGIYKPNVFCYGSLIDGLCKDRLVD 117
           ++M            ++G+              +      PN + Y  +I+GL K   V 
Sbjct: 184 EKMSSIPCAATWTILIDGLFRAIRVDEACYYFEEMKHTAIPNNWTYTVVINGLVKAGKVA 243

Query: 118 QTKDLFMEMKDKGINANTLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           + + +  EM    +   T +    CK   + +A  LLE M ++G      TY  L++G+C
Sbjct: 244 EAERVLQEMPVPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHC 303

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN--------------- 218
            + +++ A  L + M    F+PD+F+Y +LI G C+   + EA +               
Sbjct: 304 RLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNV 363

Query: 219 VSREMILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           VS   +++GF K         +F EM      P+  T +  I GLC  G   E       
Sbjct: 364 VSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEE 423

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +        V +++S+I G C+ G  + AS +F+ +       ++  YN LI+ L K G+
Sbjct: 424 MVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGR 483

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +      +  M E GC+ D  T+ TL++  
Sbjct: 484 LCDAKLRVKEMTERGCSPDGVTYGTLIVGL 513



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 152/371 (40%), Gaps = 53/371 (14%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-----------KKMATFGC-------RP 57
           RR  R L  +  +S   GF M+ N + + +LV             M  FG        R 
Sbjct: 29  RRDVRQLLQIVESSSRLGFSMKWNGQLSQRLVGVILHMVKNGESAMVFFGWAGTRQDFRH 88

Query: 58  NVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD 117
            V T +     L RTG      +L +E       +     P+   YG LI GLC    + 
Sbjct: 89  TVHTYNCFYEALIRTGQCEEAYRLFKE------KWPQELIPDSITYGILIRGLCNFGKLK 142

Query: 118 QTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
               L+ EM D+G+    L        LCK   L  A R  E M      P   T+T L+
Sbjct: 143 LACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSS---IPCAATWTILI 199

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           +G     +V+ A   F+ M     +P+ ++Y+V+ING  K   V EA  V +EM      
Sbjct: 200 DGLFRAIRVDEACYYFEEMKHTA-IPNNWTYTVVINGLVKAGKVAEAERVLQEM------ 252

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                      VP        I G CK G + +   L   ++    +     +N+LI G 
Sbjct: 253 ----------PVPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGH 302

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME-ENGCALD 348
           C+    + A EL  ++   + V D+  Y+ILI  L +  ++ +   LL ++  E+ C  +
Sbjct: 303 CRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPN 362

Query: 349 VDTFNTLMISF 359
           V ++NTL+  F
Sbjct: 363 VVSYNTLIDGF 373



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 141/358 (39%), Gaps = 53/358 (14%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
            A   F S +    +P N   +NSLI G C  G + DA   VK+M   GC P+  T  TL
Sbjct: 451 AASTVFDSMVANGCQP-NLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTL 509

Query: 66  ITGLRRTGNMNLTLKLH----------------------------QEMVNGMGDFGGIYK 97
           I GL R    +    L+                            Q ++  +   G    
Sbjct: 510 IVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLRVVLATGN--S 567

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRL 149
           P  F Y ++I+ LCK+  + + + L  +M   GI  +          +C++ K V A   
Sbjct: 568 PTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAF 627

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA-IALFDSMARKGFMPDVFSYSVLINGYC 208
           LE M++ G  P + TY+ LLN     GK + A + L   ++     PD   Y  LI  Y 
Sbjct: 628 LEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYS 687

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
               VEEA NV              E+K    +      N  + GL +  ++  V EL  
Sbjct: 688 NQDQVEEARNV------------LQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLR 735

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
            ++ +   +    FN LI+G C+ G  + A  + +++  K L         L+  L +
Sbjct: 736 EMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEMK-KVLTPSAAIIKFLVDELAR 792



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 152/381 (39%), Gaps = 74/381 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +++T+N+LI G C    I  A +L+++M +    P++ T D LI GL R   ++    L 
Sbjct: 291 DNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLL 350

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             + N          PNV  Y +LIDG  K   V+    LF+EM   G + + +      
Sbjct: 351 GTLRNE-----DDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLI 405

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM------ 188
             LC   +  EA+  LE M+ + + P +  Y+ +++G C  G+++ A  +FDSM      
Sbjct: 406 RGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQ 465

Query: 189 -----------------------------ARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
                                          +G  PD  +Y  LI G C+    +EA ++
Sbjct: 466 PNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDL 525

Query: 220 SREMILNGFKKIFNEMKLCNVV-----------------------PETFTCNIFIDGLCK 256
               +  G +   +E   CNVV                       P  F     I+ LCK
Sbjct: 526 YVRSLEQGIE--ISETS-CNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCK 582

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             ++ E  +L   +  +  +      ++L+   C+     +A     ++        V  
Sbjct: 583 ENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGT 642

Query: 317 YNILIHALGKEGQIKKENYLL 337
           Y+ L++AL K G+  + + +L
Sbjct: 643 YSTLLNALFKAGKPSEAHVVL 663


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 162/348 (46%), Gaps = 27/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V++N LI G C  G I +A  L  +M    C PNV T   LI GL R  N++  + L 
Sbjct: 257 NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRK-NVHKAMGLL 315

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------- 135
            EM+           P++  Y SLI G C+   +D    L   MK++G+  +        
Sbjct: 316 DEMLERN------LVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFI 369

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ EA RL + + + G++  +  Y+ L++GYC VGKV+ A  LF+ M  K   
Sbjct: 370 DFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCS 429

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+ ++++ LI+G C   N++EA+++  +M+  G K            P  +T NI I  +
Sbjct: 430 PNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLK------------PTVYTFNILIGRM 477

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K G   +  +    +  S  +     +N+ I   C  G  + A ++  ++  + +  D 
Sbjct: 478 LKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDD 537

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             Y  LI A GK G       +L SM +  C     TF +L+     K
Sbjct: 538 FTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDK 585



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 154/339 (45%), Gaps = 31/339 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN +I  +C  G +++A Q + KM   G  P+  T  + I G  R+ +++   ++ +EM
Sbjct: 194 TFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEM 253

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            N           N   Y  LI GLC+   +D+   LF+ MKD     N          L
Sbjct: 254 PNR----------NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGL 303

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+K  + +A  LL+ M++R L P + TY  L+ G C  G ++ A  L   M  +G +PD 
Sbjct: 304 CRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQ 362

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y   I+  CK+  VEEA            +++F+ +    V       ++ IDG CK 
Sbjct: 363 RTYGCFIDFLCKSNRVEEA------------RRLFDSLTEEGVSANVIMYSVLIDGYCKV 410

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V E   LF  +   NC      FN+LI G C  G  + A  LF+++    L   V  +
Sbjct: 411 GKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTF 470

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           NILI  + K+G     +  L  M  +G      T+N  +
Sbjct: 471 NILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFI 509



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 144/330 (43%), Gaps = 63/330 (19%)

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEA 146
           I K ++ CY  L+  L +  LVD+   L+ EM ++ ++ +         + CK   + EA
Sbjct: 152 ITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEA 211

Query: 147 NRLLELMMQRGLNPVIFT-------------------------------YTPLLNGYCLV 175
            + +  M+Q GL+P  FT                               Y  L++G C  
Sbjct: 212 KQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEA 271

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI----------- 224
           G+++ A++LF  M      P+V++Y+ LI G C+  NV +AM +  EM+           
Sbjct: 272 GRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRK-NVHKAMGLLDEMLERNLVPDLITY 330

Query: 225 ------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                       L+   ++ + MK   +VP+  T   FID LCK+  V E   LF +L  
Sbjct: 331 NSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTE 390

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 V +++ LI G CK G  + A  LF K+  KN   +   +N LIH L   G +K+
Sbjct: 391 EGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKE 450

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              L   M + G    V TFN L+   L++
Sbjct: 451 ALSLFDQMVKMGLKPTVYTFNILIGRMLKQ 480



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 163/396 (41%), Gaps = 72/396 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + ++ LI G+C  G + +A  L +KM +  C PN  T + LI GL   GN+   L L 
Sbjct: 396 NVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLF 455

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN--ANT----- 135
            +MV  MG      KP V+ +  LI  + K    D       +M   G    A T     
Sbjct: 456 DQMVK-MG-----LKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFI 509

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            + C   K+ EA  ++  M + G+ P  FTYT L+  Y  +G    A  +  SM      
Sbjct: 510 EVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCE 569

Query: 195 PDVFSYSVLING-YCKNFNVEEA----------------MNVSREMILNGFKKIFNEMKL 237
           P   ++  LI   + K + VE++                 N+ + M  +   ++F EM+ 
Sbjct: 570 PSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEK 629

Query: 238 CNVVPETFTCNIFIDGLCKN---GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
               P++      I G+CK    G  L++++      IS  E+   +FN++I  CCK   
Sbjct: 630 HGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEM---VFNAVISCCCKLQK 686

Query: 295 FEIASELFNKL----------SCKNLVA-------------------------DVVAYNI 319
           +  A+ +   +           CK L+                          D +A+ I
Sbjct: 687 YGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKI 746

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           LI  + K+G +++ + L   ME+NGC     T++ L
Sbjct: 747 LIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSIL 782



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 133/288 (46%), Gaps = 23/288 (7%)

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL-CKDRLVDQTKDLFMEMKDKGINANT 135
           LTL  H ++V+   D   I    + C  S  D L   D     +KD   ++  K  N   
Sbjct: 108 LTLIDHHKIVS---DVPKIIVSMIKCCYSAPDALFVSDICRKMSKDDITKLSLKCYNELL 164

Query: 136 LLCKKTKLV-EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            L  +  LV E N+L   M++  ++  I+T+  ++N YC +G V  A      M + G  
Sbjct: 165 TLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLS 224

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD F+ +  I GYC++ +V+ A             ++F EM   N V    + N  I GL
Sbjct: 225 PDYFTSTSFILGYCRSKDVDSAF------------RVFEEMPNRNEV----SYNQLIHGL 268

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + E + LF  ++   C   V  + +LI+G C+  + + A  L +++  +NLV D+
Sbjct: 269 CEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVHK-AMGLLDEMLERNLVPDL 327

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + YN LI    + G +     LL  M+E G   D  T+    I FL K
Sbjct: 328 ITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCF-IDFLCK 374


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 161/351 (45%), Gaps = 54/351 (15%)

Query: 3   KVLGALMAFGSF---------IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF 53
           KVL  LM    F         I  C  P +   FN ++  FC EG +R A  +   +  +
Sbjct: 106 KVLEHLMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKW 165

Query: 54  GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
           G RP+V + +TL+ G  R G+++   +L   M        G+ +P+V+ Y  LI+GLCK+
Sbjct: 166 GLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAM-----HASGV-QPDVYTYSVLINGLCKE 219

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
                                      +K+ EAN L   M+ RGL P   T+T L++ +C
Sbjct: 220 ---------------------------SKVDEANELFNEMLDRGLVPNGVTFTTLIDVHC 252

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G V+ A+ ++  M  +GF PD+ +Y+ LI G CK  ++++   +  EM +NG K    
Sbjct: 253 KNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLK---- 308

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+  T    IDG CK G +    E    +   +  L    + +L+ G C+ G
Sbjct: 309 --------PDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEG 360

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             + A ++F ++    L  D   Y ++I+   K+G ++  + LL  M+ +G
Sbjct: 361 RADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDG 411



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 155/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ L+  +   G + DA Q  +            TC  ++  L +     L    ++E++
Sbjct: 69  FSGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  ++   CK+  + + + +F  +   G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M   G+ P ++TY+ L+NG C   KV+ A  LF+ M  +G +P+  
Sbjct: 183 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+ +CKN  V+ AM + ++M+  GF             P+  T N  I GLCK G
Sbjct: 243 TFTTLIDVHCKNGMVDSAMEIYKQMLSQGFS------------PDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +V  L   + ++  +     + +LI GCCK G  E A E   ++  +++  D VAY 
Sbjct: 291 DLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            L+  L +EG+      +   M   G   D  T+  ++  F +K
Sbjct: 351 ALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKK 394



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 98/203 (48%), Gaps = 17/203 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SKV  A   F   + R   P N VTF +LI   C  G +  A ++ K+M + G  P++ T
Sbjct: 220 SKVDEANELFNEMLDRGLVP-NGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLIT 278

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
            +TLI GL + G++     L  EM +NG+       KP+   Y +LIDG CK+  ++   
Sbjct: 279 YNTLIYGLCKKGDLKQVRALIDEMSMNGL-------KPDKITYTTLIDGCCKEGDLETAF 331

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +    M  + I  + +        LC++ +  +A ++   M+  GL P   TYT ++N +
Sbjct: 332 EFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEF 391

Query: 173 CLVGKVNVAIALFDSMARKGFMP 195
           C  G V  A  L   M R G +P
Sbjct: 392 CKKGDVRTASRLLKEMQRDGHVP 414



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 85/169 (50%), Gaps = 15/169 (8%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V  A+  +   + + + P + +T+N+LI G C +G+++    L+ +M+  G +P+  T  
Sbjct: 257 VDSAMEIYKQMLSQGFSP-DLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYT 315

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           TLI G  + G++    +  + M+        I   NV  Y +L+ GLC++   D  + +F
Sbjct: 316 TLIDGCCKEGDLETAFEFRKRMIKE-----SIRLDNV-AYTALVSGLCQEGRADDAEKMF 369

Query: 124 MEMKDKGINAN----TLL----CKKTKLVEANRLLELMMQRGLNPVIFT 164
            EM   G+  +    T++    CKK  +  A+RLL+ M + G  P + T
Sbjct: 370 REMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 156/331 (47%), Gaps = 26/331 (7%)

Query: 21  PLNDVTFNSLIKGFCM-EGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           P   V+ N LIK  C  E  +  A +L ++M   GC+P+  T  TLI GL + G ++   
Sbjct: 152 PPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQA- 210

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
              +E+++ M + G    P+V  Y SLI GLC+   +D+  +L  EM   GI  N     
Sbjct: 211 ---KELLDEMEEKG--LSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYS 265

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK     +A  LLE+M++R L P + TY+ L+NG C  GK   A+ + D M  +
Sbjct: 266 SLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQ 325

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC---N 248
           G  PD   Y  +I+G C   N +EA N   EM L G           N    TF     N
Sbjct: 326 GLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISP--------NRASWTFHVKMHN 377

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           + + GLC N       +L+ ++      + +  F+ L++  CK G    A+ +  ++   
Sbjct: 378 MVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILD 437

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             + D   +N+L+  L    ++++   LL++
Sbjct: 438 GCIPDEGMWNVLMCGLWDRKKVRETTELLVA 468



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 147/308 (47%), Gaps = 27/308 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF ++I         R A  ++++M    C     T D  +T  R  G ++  L   + +
Sbjct: 52  TFGAMIHRLVSVNQFRPAEGMLERMKQEDCE---VTEDVFLTICRGYGRVHRPLDAIR-V 107

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            + M DF    KP    Y ++ D L ++  V +    + EM++KGI    +        L
Sbjct: 108 FHKMEDFQ--VKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKAL 165

Query: 138 CKKTKLVE-ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           CK  + VE A RL   M  RG  P  +TY  L+NG C +GK++ A  L D M  KG  P 
Sbjct: 166 CKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPS 225

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V SY+ LI+G C++ N++EA+ +  EMI+NG +            P  FT +  +DGLCK
Sbjct: 226 VVSYTSLIHGLCQSNNLDEAIELLEEMIINGIE------------PNVFTYSSLMDGLCK 273

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +GH  + MEL   +        +  +++LI G CK G    A E+ +++  + L  D   
Sbjct: 274 SGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGM 333

Query: 317 YNILIHAL 324
           Y  +I  L
Sbjct: 334 YGRIISGL 341



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 158/343 (46%), Gaps = 34/343 (9%)

Query: 37  EGNIRDASQLVKKMATFGCRPNVTTCDTLITGL-RRTGNMNLTLKLHQEMVNGMGDFGGI 95
           E +++ A    K+M   G  P V + + LI  L +    +    +L +EM N        
Sbjct: 133 ENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRG------ 186

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
            +P+ + YG+LI+GLCK   + Q K+L  EM++KG++ + +        LC+   L EA 
Sbjct: 187 CQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAI 246

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            LLE M+  G+ P +FTY+ L++G C  G  + A+ L + M R+  +P++ +YS LING 
Sbjct: 247 ELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGL 306

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK     EA+ +   M L G K            P+       I GLC   +  E     
Sbjct: 307 CKEGKHREAVEILDRMRLQGLK------------PDAGMYGRIISGLCAACNYQEAANFI 354

Query: 268 PTLEI-------SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
             + +       ++    V++ N +++G C       A +L+  +  + +  ++  ++ L
Sbjct: 355 DEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCL 414

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +    K G + K   +L  M  +GC  D   +N LM     ++
Sbjct: 415 VKCFCKRGDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRK 457



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 80/216 (37%), Gaps = 46/216 (21%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  +LE M Q         +  +  GY  V +   AI +F  M      P   SY  + +
Sbjct: 69  AEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFD 128

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
              +  +V+ A+         GF   + EM+   + P   + NI I  LCKN   +E   
Sbjct: 129 ILVEENHVKRAI---------GF---YKEMREKGIPPTVVSLNILIKALCKNEETVE--- 173

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
                  S   LF E+ N   RGC                       D   Y  LI+ L 
Sbjct: 174 -------SAFRLFREMPN---RGC---------------------QPDSYTYGTLINGLC 202

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           K G+I +   LL  MEE G +  V ++ +L+    Q
Sbjct: 203 KLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQ 238


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 162/349 (46%), Gaps = 45/349 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 115 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+       G+ +P+V+ Y  LI+GLCK+         
Sbjct: 175 NTLMNGYIRLGDLDEGFRLKSAMLAS-----GV-QPDVYTYSVLINGLCKE--------- 219

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 220 ------------------SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK------------P 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +L  G C+ G    A ++ 
Sbjct: 310 DKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKML 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            ++    L  D   Y ++I+   K+G + K + LL  M+ +G    V T
Sbjct: 370 REMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 418



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 183 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   + +   +     + +LI GCCK G  + A E   ++  +N+  D VAY 
Sbjct: 291 DLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            L   L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 351 ALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 394


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 179/367 (48%), Gaps = 38/367 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N+LI G C    + +A   ++KM   G  P+  T +++I G  + G M    ++ ++
Sbjct: 286 ITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRD 345

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC------ 138
                G F G + P+   Y SLI+GLC+D  +D+  ++F E  +KG+  N +LC      
Sbjct: 346 -----GAFKG-FVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKG 399

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             ++  +++A +L+  M + G +P I+TY  ++NG C +G V+ A  L      KG +PD
Sbjct: 400 LSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPD 459

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNG------FKKIFNEMK 236
           VF+++ LI+GYCK   ++ A+ +   M              ILNG      ++ +    K
Sbjct: 460 VFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFK 519

Query: 237 LC---NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           L      VP   T NI  +  CK   V E + L   ++       V  F +L++G C  G
Sbjct: 520 LMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNG 579

Query: 294 IFEIASELFNKLSCKNLVADVVA-YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
             + A +LF ++  +   +  +A YNI+I+A   +  +     L   M ENG + D  T+
Sbjct: 580 DLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTY 639

Query: 353 NTLMISF 359
             ++  F
Sbjct: 640 RVMIDGF 646



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 156/344 (45%), Gaps = 29/344 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++ T+ SLI G C +G+I  A  +  +    G +PN+  C+TL+ GL + G +   LKL 
Sbjct: 354 DESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLM 413

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
            EM  NG         P+++ Y  +I+GLCK   V    +L ++   KG        NTL
Sbjct: 414 NEMSENGCS-------PDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTL 466

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   CKK KL  A  +++ M   G++P + TY  +LNG C  GK    +  F  M  KG 
Sbjct: 467 IDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGC 526

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P++ +Y++L   +CK   VEEA+N+  EM   G            + P+       + G
Sbjct: 527 VPNIITYNILTESFCKARKVEEALNLIEEMQNKG------------LTPDVVNFGTLMKG 574

Query: 254 LCKNGHVLEVMELFPTL-EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            C NG +    +LF  + E       +  +N +I          +A +LFNK+       
Sbjct: 575 FCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSP 634

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D   Y ++I    K G I      LL   E G    + TF  ++
Sbjct: 635 DSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVL 678



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 161/358 (44%), Gaps = 57/358 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           + FN LI   C +G+++++ +L+ K+   G  PN+ T +  I G  +   +N  ++L   
Sbjct: 217 MAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDG 276

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           +  G+        P+V  Y +LI GLCK+                            K+V
Sbjct: 277 VGRGL-------TPDVITYNTLICGLCKN---------------------------FKVV 302

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           EA   L  M+  G  P  FTY  +++GYC +G +  A  +    A KGF+PD  +Y  LI
Sbjct: 303 EAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLI 362

Query: 205 NGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVV 241
           NG C++ +++ A+NV  E +  G K                       K+ NEM      
Sbjct: 363 NGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCS 422

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+ +T N+ I+GLCK G V +   L            V  FN+LI G CK    + A E+
Sbjct: 423 PDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEI 482

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +++    +  DV+ YN +++ L K G+ +        M E GC  ++ T+N L  SF
Sbjct: 483 VDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESF 540



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 166/363 (45%), Gaps = 50/363 (13%)

Query: 31  IKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG-- 88
           ++ +  +G I++A  + ++M  F C P+V + + ++  L      +   K++  M +   
Sbjct: 83  MRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGI 142

Query: 89  ----------MGDFGGIYKPN-----------------VFCYGSLIDGLCKDRLVDQTKD 121
                     M  F    +P+                    Y ++I G  ++    +  +
Sbjct: 143 VPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHE 202

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF EM   GI  + +        LC+K  + E+ RLL  +++RG++P +FT    + G+C
Sbjct: 203 LFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFC 262

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
               +N AI L D + R G  PDV +Y+ LI G CKNF V EA +  R+M+  G++    
Sbjct: 263 QRAMLNEAIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYE---- 317

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+ FT N  IDG CK G +    ++               + SLI G C+ G
Sbjct: 318 --------PDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDG 369

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A  +FN+   K L  ++V  N L+  L ++G I +   L+  M ENGC+ D+ T+N
Sbjct: 370 DIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYN 429

Query: 354 TLM 356
            ++
Sbjct: 430 LVI 432



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 108/250 (43%), Gaps = 25/250 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+NS++ G C  G   D     K M   GC PN+ T + L     +   +   L L +E
Sbjct: 496 ITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEE 555

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M N      G+  P+V  +G+L+ G C +  +D    LF  + ++   ++T+        
Sbjct: 556 MQNK-----GL-TPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMIN 609

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
               K  +  A +L   M + G +P  +TY  +++G+C  G +N   +       KG +P
Sbjct: 610 AFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIP 669

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----KKIFNEMKLCNVVPETFTCNIF 250
            + ++  ++N  C    V EA+ +   M+  G        IF   K     P+     I 
Sbjct: 670 SLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVVNTIFEADKKEVAAPK-----IV 724

Query: 251 IDGLCKNGHV 260
           ++ L K GH+
Sbjct: 725 VENLMKKGHI 734



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 12/198 (6%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y   +  Y   GK+  A+ +F+ M      P V SY+ ++N   +    ++A        
Sbjct: 79  YIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQA-------- 130

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                K++  M+   +VP+ +T  I +   C+         L   +    CE     + +
Sbjct: 131 ----HKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCT 186

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +I G  +      A ELF ++    +  D++A+N LIH L ++G +++   LL  + + G
Sbjct: 187 VIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRG 246

Query: 345 CALDVDTFNTLMISFLQK 362
            + ++ T N  +  F Q+
Sbjct: 247 VSPNLFTVNIFIQGFCQR 264


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 157/335 (46%), Gaps = 45/335 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+  FC EG IR A  +   +  +G RP+V + +TL+ G  + G++N
Sbjct: 129 ECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L   M        G+ +P+V+ Y  LI+GLCK+                       
Sbjct: 189 EGFRLKNAM-----QASGV-QPDVYTYSVLINGLCKE----------------------- 219

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
               +KL +AN L + M+  GL P   ++T L++G+C  G+V++A+ ++  M  +   PD
Sbjct: 220 ----SKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPD 275

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CKN ++++A ++  EM + G K            P+  T    IDG CK
Sbjct: 276 LITYNTLIYGLCKNGDLKQAQDLINEMSMKGLK------------PDKITYTTLIDGSCK 323

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           Y ++I+   K+G +   + L+  M+ +G    V T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L    ++E +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKT 141
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 142 KLVEAN---RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           KL + N   RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M   G +P+  
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           S++ LI+G+CK+  V+ AM + ++M+              ++ P+  T N  I GLCKNG
Sbjct: 243 SFTTLIDGHCKDGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKNG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D VAY 
Sbjct: 291 DLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   ++ T+  ++  F +K
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 13/227 (5%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ ++  A  + + + + GL P + ++  L+NGY  +G +N    L ++M   G  PD
Sbjct: 146 FCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V++YSVLING CK   +++A  +  EM+ NG            +VP + +    IDG CK
Sbjct: 206 VYTYSVLINGLCKESKLDDANELFDEMLDNG------------LVPNSVSFTTLIDGHCK 253

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V   ME++  +   +    +  +N+LI G CK G  + A +L N++S K L  D + 
Sbjct: 254 DGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKIT 313

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y  LI    KEG ++        M +    LD D   T +IS L +E
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKRMIKENIRLD-DVAYTALISGLCQE 359


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 160/347 (46%), Gaps = 26/347 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N++++  C  G +++A +++ +     C P+V T   LI        +   +KL  E
Sbjct: 210 VTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDE 269

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M           KP+V  Y  LI+G+CK+  +D+       M   G   N +        
Sbjct: 270 MRKKG------CKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRS 323

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C   + ++A RLL  M+++G +P + T+  L+N  C    +  AI + + M + G MP+
Sbjct: 324 MCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPN 383

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY+ L++G+C+   ++ A+     M+  G              P+  T N  +  LCK
Sbjct: 384 SLSYNPLLHGFCQEKKMDRAIEYLEIMVSRG------------CYPDIVTYNTLLTALCK 431

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G     +E+   L    C   +  +N++I G  K G  E A+EL  ++  K L  D++ 
Sbjct: 432 DGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIIT 491

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y+ L+  LG EG++ +   +   ME         T+N +M+   + +
Sbjct: 492 YSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQ 538



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 155/345 (44%), Gaps = 23/345 (6%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           R   +   N  ++     G + +  + +++M   G  P+V  C +LI G  R+G      
Sbjct: 103 RSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKAT 162

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTLL 137
           ++ + + N     G +  P+V  Y  LI G CK   +D+   +   M +    +  NT+L
Sbjct: 163 RIMEILENS----GAV--PDVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTIL 216

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C   KL EA  +L+  MQR   P + TYT L+   C    V  A+ L D M +KG  
Sbjct: 217 RSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCK 276

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV +Y+VLING CK   ++EA+            K  N M L    P   T NI +  +
Sbjct: 277 PDVVTYNVLINGICKEGRLDEAI------------KFLNNMPLYGCQPNVITHNIILRSM 324

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G  ++   L   +    C   V  FN LI   C+  +   A ++  K+     + + 
Sbjct: 325 CSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNS 384

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           ++YN L+H   +E ++ +    L  M   GC  D+ T+NTL+ + 
Sbjct: 385 LSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL 429



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 159/349 (45%), Gaps = 28/349 (8%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R CY  +  +T+  LI+  C +  +  A +L+ +M   GC+P+V T + LI G+ + G +
Sbjct: 238 RECYPDV--ITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 295

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           +  +K     +N M  +G   +PNV  +  ++  +C        + L  +M  KG + + 
Sbjct: 296 DEAIKF----LNNMPLYG--CQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSV 349

Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +        LC+K  L  A  +LE M + G  P   +Y PLL+G+C   K++ AI   + 
Sbjct: 350 VTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEI 409

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +G  PD+ +Y+ L+   CK+   + A+            +I N++      P   T 
Sbjct: 410 MVSRGCYPDIVTYNTLLTALCKDGKADAAV------------EILNQLSSKGCSPVLITY 457

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           N  IDGL K G      EL   +     +  +  +++L+RG    G  + A ++F+ +  
Sbjct: 458 NTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEG 517

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++    V YN ++  L K  Q  +    L  M E GC     T+  L+
Sbjct: 518 LSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILI 566



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 129/303 (42%), Gaps = 53/303 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N LI G C EG + +A + +  M  +GC+PNV T + ++  +  TG      +L  +
Sbjct: 280 VTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLAD 339

Query: 85  MVNG-------------------------------MGDFGGIYKPNVFCYGSLIDGLCKD 113
           M+                                 M   G +  PN   Y  L+ G C++
Sbjct: 340 MLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCM--PNSLSYNPLLHGFCQE 397

Query: 114 RLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTY 165
           + +D+  +    M  +G     +  NTLL   CK  K   A  +L  +  +G +PV+ TY
Sbjct: 398 KKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITY 457

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             +++G   VGK   A  L + M RKG  PD+ +YS L+ G      V+EA+        
Sbjct: 458 NTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAI-------- 509

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
               KIF++M+  ++ P   T N  + GLCK       ++    +    C+     +  L
Sbjct: 510 ----KIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTIL 565

Query: 286 IRG 288
           I G
Sbjct: 566 IEG 568


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 168/347 (48%), Gaps = 28/347 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N+LI+GFC  G +++AS++ + M   G RPNV T   LI GL   G     L+    
Sbjct: 283 ITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNL 342

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+    +      PN   Y  +I+ LCKD LV    ++   MK +    + +        
Sbjct: 343 MIEKDEE------PNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGG 396

Query: 137 LCKKTKLVEANRLLELMMQRG--LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           LC K  L EA++LL LM++     +P + +Y  L++G C   +++ A+ ++D +  K   
Sbjct: 397 LCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGA 456

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  + ++L+N   K  +V +AM            +++ ++    +V  + T    IDG 
Sbjct: 457 GDRVTTNILLNSTLKAGDVNKAM------------ELWKQISDSKIVRNSDTYTAMIDGF 504

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G +     L   + +S  +  V  +N L+   CK G  + A  LF ++   N   DV
Sbjct: 505 CKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDV 564

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           V++NI+I    K G IK    LL+ M   G + D+ T++ L+  FL+
Sbjct: 565 VSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLK 611



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 170/344 (49%), Gaps = 28/344 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++N++I+GFC    +  A +L  +M   GC  ++ T   LI    + G M+  +   +EM
Sbjct: 179 SYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM 238

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
                 F G+ + ++  Y SLI G C    +D+ K LF E+ ++G     I  NTL+   
Sbjct: 239 -----KFMGL-EADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGF 292

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  +L EA+ + E M++RG+ P ++TYT L++G C VGK   A+   + M  K   P+ 
Sbjct: 293 CKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNA 352

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+++IN  CK+  V +A+            +I   MK     P+  T NI + GLC  
Sbjct: 353 VTYNIIINKLCKDGLVADAV------------EIVELMKKRRTRPDNITYNILLGGLCAK 400

Query: 258 GHVLEVMELFPTL--EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           G + E  +L   +  + S  +  V  +N+LI G CK      A ++++ L  K    D V
Sbjct: 401 GDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRV 460

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             NIL+++  K G + K   L   + ++    + DT+  ++  F
Sbjct: 461 TTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 159/362 (43%), Gaps = 25/362 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K   AL      I +   P N VT+N +I   C +G + DA ++V+ M     RP+  T 
Sbjct: 332 KTKEALQPLNLMIEKDEEP-NAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITY 390

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + L+ GL   G+++   KL   M+           P+V  Y +LI GLCK+  + Q  D+
Sbjct: 391 NILLGGLCAKGDLDEASKLLYLMLKD----SSYTDPDVISYNALIHGLCKENRLHQALDI 446

Query: 123 FMEMKDK-----GINANTLLCKKTKLVEANRLLELMMQRGLNPVIF---TYTPLLNGYCL 174
           +  + +K      +  N LL    K  + N+ +EL  Q   + ++    TYT +++G+C 
Sbjct: 447 YDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCK 506

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G +NVA  L   M      P VF Y+ L++  CK  ++++A             ++F E
Sbjct: 507 TGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAW------------RLFEE 554

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+  N  P+  + NI IDG  K G +     L   +  +     +  ++ LI    K G 
Sbjct: 555 MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGY 614

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A   F+K+       D    + ++     +G+  K   L+  + +    LD +   T
Sbjct: 615 LDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCT 674

Query: 355 LM 356
           +M
Sbjct: 675 VM 676



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 126/269 (46%), Gaps = 22/269 (8%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+VF Y ++I G C+ + +++  +L  EMK  G + + +         CK  K+ EA   
Sbjct: 175 PDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGF 234

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L+ M   GL   +  YT L+ G+C  G+++   ALFD +  +G  P   +Y+ LI G+CK
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              ++EA  +   MI  G            V P  +T    IDGLC  G   E ++    
Sbjct: 295 LGQLKEASEIFEFMIERG------------VRPNVYTYTGLIDGLCGVGKTKEALQPLNL 342

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +   + E     +N +I   CK G+   A E+   +  +    D + YNIL+  L  +G 
Sbjct: 343 MIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGD 402

Query: 330 IKKENYLLLSMEENGCALDVD--TFNTLM 356
           + + + LL  M ++    D D  ++N L+
Sbjct: 403 LDEASKLLYLMLKDSSYTDPDVISYNALI 431



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 12/208 (5%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L LM++RG    ++ +  LL G C   +   A++L   M R   MPDVFSY+ +I G+C
Sbjct: 129 VLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFC 188

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           +   +E+A+ ++            NEMK         T  I ID  CK G + E M    
Sbjct: 189 EGKELEKALELA------------NEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLK 236

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            ++    E  + ++ SLIRG C  G  +    LF+++  +      + YN LI    K G
Sbjct: 237 EMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLG 296

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
           Q+K+ + +   M E G   +V T+  L+
Sbjct: 297 QLKEASEIFEFMIERGVRPNVYTYTGLI 324



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 23/243 (9%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+  +  +A  LL  M +  L P +F+Y  ++ G+C   ++  A+ L + M   G    
Sbjct: 152 LCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWS 211

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFN 233
           + ++ +LI+ +CK   ++EAM   +EM              ++ GF         K +F+
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFD 271

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           E+      P   T N  I G CK G + E  E+F  +        V  +  LI G C  G
Sbjct: 272 EVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVG 331

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A +  N +  K+   + V YNI+I+ L K+G +     ++  M++     D  T+N
Sbjct: 332 KTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYN 391

Query: 354 TLM 356
            L+
Sbjct: 392 ILL 394



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 12/196 (6%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           + + LL  Y  + K   A  +   M ++GF  +V+++++L+ G C+N    +A+++ REM
Sbjct: 109 SLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREM 168

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
             N            +++P+ F+ N  I G C+   + + +EL   ++ S C   +  + 
Sbjct: 169 RRN------------SLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWG 216

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            LI   CK G  + A     ++    L AD+V Y  LI      G++ +   L   + E 
Sbjct: 217 ILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLER 276

Query: 344 GCALDVDTFNTLMISF 359
           G +    T+NTL+  F
Sbjct: 277 GDSPCAITYNTLIRGF 292


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 170/371 (45%), Gaps = 40/371 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMAT--FGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           VT+N+L+  F  EG     + L+K+M T   GC PN  T + +ITGL R G+    L+  
Sbjct: 205 VTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGD----LEEA 260

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------NANT 135
            E+V GM       K + F Y  LI GL     V +  DL +EM+++GI       NA  
Sbjct: 261 AELVEGMRLSK---KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMI 317

Query: 136 LLCKKTKLVEANRL-LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               ++ LVEA ++    M   GL P + TY  LLNGYC  G +  A+ LF  + R G  
Sbjct: 318 HGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLA 377

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKKI 231
           P V +Y++ I+GYC+  ++EEA  +  EM   G                        ++ 
Sbjct: 378 PTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREF 437

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F+EM    + P+ F  N  I      G +   +EL   L +         +N LI G CK
Sbjct: 438 FDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCK 497

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  + A EL  K+    L  D + Y  LIHA  + G +++   +  +M  +G      T
Sbjct: 498 TGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVT 557

Query: 352 FNTLMISFLQK 362
           F  ++ ++ ++
Sbjct: 558 FTVIIHAYCRR 568



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 168/365 (46%), Gaps = 38/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           NDVT+N +I G   +G++ +A++LV+ M     + +  T + LITGL   G +     L 
Sbjct: 240 NDVTYNVVITGLTRKGDLEEAAELVEGM-RLSKKASSFTYNPLITGLLARGCVKKVYDLQ 298

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
            EM N      GI  P V  Y ++I GL +  LV+  +  F EM+  G     I  N+LL
Sbjct: 299 LEMEN-----EGIM-PTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLL 352

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   L EA  L   + + GL P + TY   ++GYC +G +  A  L + M  +G +
Sbjct: 353 NGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCL 412

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--------KIFNEMKLCNVV----- 241
           P+V +Y++L+ G     ++  A     EM+  G +        +I  E+ L ++      
Sbjct: 413 PNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALEL 472

Query: 242 ----------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                      +T T NI I GLCK G++ +  EL   +  +  +     +  LI   C+
Sbjct: 473 REVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCE 532

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G+   A ++FN +    L+   V + ++IHA  + G +         M E G   +  T
Sbjct: 533 RGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEIT 592

Query: 352 FNTLM 356
           +N L+
Sbjct: 593 YNVLI 597



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 152/343 (44%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+NSL+ G+C  GN+++A  L   +   G  P V T +  I G  R G++     L +E
Sbjct: 346 ITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEE 405

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCK 139
           M    G+ G +  PNV  Y  L+ G      +   ++ F EM  KG+       NT +C 
Sbjct: 406 M----GEQGCL--PNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICA 459

Query: 140 KTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +  L +  R LEL   +M  G++    TY  L++G C  G +  A  L   M   G  PD
Sbjct: 460 ELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPD 519

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+ +C+   + EA            +KIFN M    ++P   T  + I   C+
Sbjct: 520 CITYTCLIHAHCERGLLREA------------RKIFNNMISDGLLPSAVTFTVIIHAYCR 567

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G++      F  +     E     +N LI   C+ G  ++AS  F+++  + LVA+   
Sbjct: 568 RGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYT 627

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y +LI    K G  +        M +NG   D  T   L+  F
Sbjct: 628 YTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALVKGF 670



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 149/328 (45%), Gaps = 37/328 (11%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL+ FG   R    P   +T+N  I G+C  G++ +A  L ++M   GC PNV T   L+
Sbjct: 364 ALLLFGDLRRAGLAP-TVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILM 422

Query: 67  TGLRRTGNMNL-TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            G     ++N+ +L + +E  + M   G   +P+ F Y + I   C + ++       +E
Sbjct: 423 KG-----SLNVCSLAMAREFFDEMLSKG--LQPDCFAYNTRI---CAELILGDIARA-LE 471

Query: 126 MKD----KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           +++    +GI+++T+        LCK   L +A  L   M+  GL P   TYT L++ +C
Sbjct: 472 LREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHC 531

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G +  A  +F++M   G +P   +++V+I+ YC+  N+  A    R+M+  G      
Sbjct: 532 ERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEG------ 585

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                 V P   T N+ I  LC+ G        F  +           +  LI G CK G
Sbjct: 586 ------VEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVG 639

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILI 321
            +E A   + ++    +  D + +  L+
Sbjct: 640 NWEDAMRFYFEMHQNGIHPDYLTHKALV 667



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 113/266 (42%), Gaps = 32/266 (12%)

Query: 123 FMEMKDKGINANTLLCKKT--KLVEANR------LLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EM   G+  +   C      L +A R      + E M+Q G+ P I TY  LL+ +  
Sbjct: 157 FREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLK 216

Query: 175 VGKVNVAIALFDSMARKGF--MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG----- 227
            G+ +    L   M  +G   +P+  +Y+V+I G  +  ++EEA  +   M L+      
Sbjct: 217 EGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSF 276

Query: 228 --------------FKKIFN---EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                          KK+++   EM+   ++P   T N  I GL ++G V      F  +
Sbjct: 277 TYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEM 336

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                   V  +NSL+ G CK G  + A  LF  L    L   V+ YNI I    + G +
Sbjct: 337 RAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDL 396

Query: 331 KKENYLLLSMEENGCALDVDTFNTLM 356
           ++   L   M E GC  +V T+  LM
Sbjct: 397 EEARILKEEMGEQGCLPNVCTYTILM 422


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/348 (30%), Positives = 153/348 (43%), Gaps = 27/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   +N+LI   C   N  +A  L  +M   G  PN  T   LI    R G ++  L   
Sbjct: 366 NIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFL 425

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM++ MG      KP+V+ Y SLI+G CK   +   + L  EM +K +    +      
Sbjct: 426 GEMID-MG-----LKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLM 479

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C K K+ +A RL   M  +G+ P I+T+T LL+G    G +  A+ LF  MA     
Sbjct: 480 GGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVK 539

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+V+I GYC+  N+ +A     EMI  G            +VP+T++    I GL
Sbjct: 540 PNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKG------------IVPDTYSYRPLIHGL 587

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G   E       L   NCEL    +  L+ G C+ G  E A  +   +  + +  D+
Sbjct: 588 CLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDL 647

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V Y +LI    K    K    LL  M + G   D D   T MI    K
Sbjct: 648 VCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPD-DVIYTSMIDAKSK 694



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 161/344 (46%), Gaps = 30/344 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I+G+C EGN+  A + + +M   G  P+  +   LI GL  TG  +      
Sbjct: 541 NRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEA---- 596

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT- 141
           +  V+G+    G  + N  CY  L+ G C++  +++   +  +M  +G++ + L+C    
Sbjct: 597 KVFVDGL--HKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLD-LVCYGVL 653

Query: 142 ---KLVEANR-----LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               L   +R     LL+ M  RGL P    YT +++     G    A  ++D M  +G 
Sbjct: 654 IDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGC 713

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P+  +Y+ +ING CK   V EA            + + ++M+  N VP   T   F+D 
Sbjct: 714 VPNEVTYTAVINGLCKAGFVNEA------------EILCSKMRPGNSVPNQVTYGCFLDI 761

Query: 254 LCKN-GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           L K  G + + +EL   + +         +N LIRG C+ G  E ASEL  ++    +  
Sbjct: 762 LTKGVGDMKKAVELHNAI-LKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSP 820

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D + Y  +I  L +   +KK   L  SM E G   D   +NTL+
Sbjct: 821 DCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLI 864



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 157/362 (43%), Gaps = 38/362 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMAT-FGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           F+ LI+ +     + D   + K M T     P V T   L+ GL +  +  L ++L  +M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDM 218

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           +N      GI +P+V+ Y  +I  LC+ + + + K++ ++M+  G + N +        L
Sbjct: 219 IN-----VGI-RPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGL 272

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CKK K+ EA  + + +  + L P + TY  L+ G C V +  V + + D M R  F P  
Sbjct: 273 CKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSE 332

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNE 234
            + S L+ G  K   VEEA+N+ + +   G                          +F+ 
Sbjct: 333 AAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDR 392

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    + P   T +I ID  C+ G +   +     +     +  V  +NSLI G CKFG 
Sbjct: 393 MGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGD 452

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A  L  ++  K L   VV Y  L+     +G+I K   L   M   G    + TF T
Sbjct: 453 ISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTT 512

Query: 355 LM 356
           L+
Sbjct: 513 LL 514



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 165/365 (45%), Gaps = 29/365 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           A+  F   I    RP  DV  +  +I+  C   ++  A +++ +M   GC  N+   + L
Sbjct: 211 AMELFDDMINVGIRP--DVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVL 268

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR-------LVDQ 118
           I GL +   +   + + +++       G   KP+V  Y +L+ GLCK +       ++D+
Sbjct: 269 IDGLCKKQKVWEAVGIKKDLA------GKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDE 322

Query: 119 TKDLFMEMKDKGINANTL-LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
              L     +  +++    L K+ K+ EA  L++ + + G++P IF Y  L++  C    
Sbjct: 323 MLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRN 382

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
            + A  LFD M + G  P+  +YS+LI+ +C+   ++ A++   EMI  G K        
Sbjct: 383 FDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLK-------- 434

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
               P  +  N  I+G CK G +     L   +     E  V  + SL+ G C  G    
Sbjct: 435 ----PSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINK 490

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A  L+++++ K +V  +  +  L+  L + G I+    L   M E     +  T+N ++ 
Sbjct: 491 ALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIE 550

Query: 358 SFLQK 362
            + ++
Sbjct: 551 GYCEE 555



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 21/224 (9%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R  +P +DV + S+I      G+ ++A  +   M   GC PN  T   +I GL + G +N
Sbjct: 676 RGLKP-DDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN 734

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD---KGINA 133
               L  +M  G         PN   YG  +D L K  + D  K +  E+ +   KG+ A
Sbjct: 735 EAEILCSKMRPGNS------VPNQVTYGCFLDILTKG-VGDMKKAV--ELHNAILKGLLA 785

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           NT          C++ ++ EA+ L+  M+  G++P   TYT +++  C    V  AI L+
Sbjct: 786 NTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELW 845

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           +SM  KG  PD  +Y+ LI+G C    + +A  +  EM+  G K
Sbjct: 846 NSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLK 889



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 22/195 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT----CDTLITGLRRTGNMNLT 78
           N+VT+ ++I G C  G + +A  L  KM      PN  T     D L  G+   G+M   
Sbjct: 716 NEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGV---GDMKKA 772

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           ++LH  ++ G+         N   Y  LI G C+   +++  +L   M   G++ + +  
Sbjct: 773 VELHNAILKGL-------LANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITY 825

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LC++  + +A  L   M ++G+ P    Y  L++G C+ G++  A  L + M R
Sbjct: 826 TTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLR 885

Query: 191 KGFMPDVFSYSVLIN 205
           +G  P+  +    I+
Sbjct: 886 QGLKPNTETSETTIS 900



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 12/208 (5%)

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
           +M +  L P + T + LL+G        +A+ LFD M   G  PDV+ Y+ +I   C+  
Sbjct: 182 MMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELK 241

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
           ++  A  +  +M   G           N+VP     N+ IDGLCK   V E + +   L 
Sbjct: 242 DLSRAKEMIVQMEATGCD--------VNIVPY----NVLIDGLCKKQKVWEAVGIKKDLA 289

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
               +  V  + +L+ G CK   FE+  E+ +++          A + L+  L K G+++
Sbjct: 290 GKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVE 349

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
           +   L+  + E G + ++  +N L+ S 
Sbjct: 350 EALNLVKRVAEFGVSPNIFVYNALIDSL 377


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 183/384 (47%), Gaps = 53/384 (13%)

Query: 23  NDVTFNSLIKGFC------MEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           N V +   I GFC           RD  ++++     G  P+V T +T I+GL + G ++
Sbjct: 149 NLVVYIDCIFGFCEARCQSSRYECRDGDEMIES----GRIPDVVTYNTFISGLCKAGKLD 204

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
             L++ +EM     D GGI  P+V  + S+I GLCK   +D    +F  M ++G   ++L
Sbjct: 205 KGLEMLEEM-----DRGGI-PPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSL 258

Query: 137 --------LCKKTKLVEANRLLELM--MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                   L +  +L   + +LE M  M+ G    ++T+   +   C  GK  +A  +  
Sbjct: 259 TYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILL 318

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI---------------LNGF--- 228
            M   G +P++ SY+ +I+G CK+ NV++A  +SR+M+               ++GF   
Sbjct: 319 GMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKA 378

Query: 229 ------KKIFNEMKLCNV-VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
                  ++  EMK  N+ VP+  T N  IDG  K G + +   L   ++   C+  V  
Sbjct: 379 GRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVT 438

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN--YLLLS 339
           + +LI G  K G++E A  LF+++S K    D++ YN ++ A  K G + K    Y  L 
Sbjct: 439 YAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLK 498

Query: 340 MEENGCALDVDTFNTLMISFLQKE 363
            + + C+ D  T+  L+  + + E
Sbjct: 499 NKTSYCSPDAITYRILIDGYCRAE 522



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 178/409 (43%), Gaps = 84/409 (20%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI G C      DA Q VK+M   GC P++ T ++LI GL     M+    + 
Sbjct: 44  NVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVL 103

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
           QE+V NG       + PN   Y +L+   C+ R +DQ + L  EM  +G   N ++    
Sbjct: 104 QELVRNG-------FAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDC 156

Query: 138 --------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                   C+ ++     R  + M++ G  P + TY   ++G C  GK++  + + + M 
Sbjct: 157 IFGFCEARCQSSRY--ECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMD 214

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAM-----------------------NVSREMILN 226
           R G  PDV ++  +I+G CK   +++A                        N+SR   L+
Sbjct: 215 RGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLD 274

Query: 227 GFKKIFNEMKL--CNVVPETFTCNIF---------------------------------- 250
              ++   M+      V E +T N F                                  
Sbjct: 275 TVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNF 334

Query: 251 -IDGLCKNGHVLEVMELF-PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
            IDGLCK+G+V +  +L    L+   C+  V  FN+LI G CK G    A +L  ++  K
Sbjct: 335 VIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAK 394

Query: 309 NL-VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N+ V DVV YN LI    K G +K+   LL  M+  GC  +V T+  L+
Sbjct: 395 NICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALI 443



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 139/296 (46%), Gaps = 35/296 (11%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           Y  +V  Y +LIDGLCK   +D  + L  +M D G   N +        LCK  +  +A 
Sbjct: 6   YDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAI 65

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           + ++ M++ G  P + TY  L++G C+  +++ A  +   + R GF P+  +YS L+   
Sbjct: 66  QTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWN 125

Query: 208 CKNFNVEEAMNVSREMILNG--------FKKIF-----------------NEMKLCNVVP 242
           C+   +++A  + REMIL G           IF                 +EM     +P
Sbjct: 126 CRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIP 185

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T N FI GLCK G + + +E+   ++       V  F S+I G CK    + A ++F
Sbjct: 186 DVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVF 245

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME--ENGCALDVDTFNTLM 356
             +  +  V D + Y+I++  L +  ++   + +L  M+  + GC ++V T N  +
Sbjct: 246 KGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFI 301



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 159/387 (41%), Gaps = 60/387 (15%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT-- 78
           P + VTF S+I G C    I DA Q+ K M   GC P+  T   ++  L R   ++    
Sbjct: 219 PPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDE 278

Query: 79  -------------------------------LKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107
                                            L + ++ GM + G +  PN+  Y  +I
Sbjct: 279 VLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSL--PNLLSYNFVI 336

Query: 108 DGLCKDRLVDQTKDLFMEMKDKG------INANTLL---CKKTKLVEANRLLELMMQRGL 158
           DGLCK   VD    L  +M D G      I  NTL+   CK  +L +A++LL  M  + +
Sbjct: 337 DGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNI 396

Query: 159 -NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
             P + TY  L++G    G +  A  L   M   G  P+V +Y+ LINGY K+   EEA 
Sbjct: 397 CVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEA- 455

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL--EISNC 275
                      + +F+EM      P+  T N  +    K G + +   ++  L  + S C
Sbjct: 456 -----------ESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYC 504

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI-KKEN 334
                 +  LI G C+    E    L  +++ +    D   YN+LI  L +  ++  K  
Sbjct: 505 SPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKAL 564

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQ 361
            +   M +  C      FN+L+  FL+
Sbjct: 565 AVYQQMLDQDCVPSASIFNSLVRLFLR 591



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 154/349 (44%), Gaps = 68/349 (19%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T N+ I   C  G    A  ++  M   G  PN+ + + +I GL ++GN++   KL ++M
Sbjct: 296 THNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKM 355

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI------NANTLLCK 139
           ++      G  KP+V  + +LI G CK   + Q   L +EMK K I        NTL+  
Sbjct: 356 LDS-----GCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDG 410

Query: 140 KTK---LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           ++K   L +A  LL+ M   G  P + TY  L+NGY   G    A +LFD M+ KG  PD
Sbjct: 411 QSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPD 470

Query: 197 VFSYS-------------------------------------VLINGYCKNFNVEEAMNV 219
           + +Y+                                     +LI+GYC+  + E+ + +
Sbjct: 471 IITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTL 530

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL-EVMELFPTLEISNCELF 278
            +EM   G+         C    +++T N+ I  L +   V  + + ++  +   +C   
Sbjct: 531 LQEMTARGWS--------C----DSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPS 578

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             IFNSL+R   + G    A  +  +++ K  + D  A N  + AL KE
Sbjct: 579 ASIFNSLVRLFLRTGDVNSARSMVQEMNEKGHLVD--ASN--LEALNKE 623


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 166/342 (48%), Gaps = 23/342 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + + +LI     +  + +A +L+++M   GC P+V T + +I GL +   ++   KL 
Sbjct: 252 NSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLV 311

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-DKGINANTLL---C 138
             M+       G Y P+   YG L+ GLC+   +++ + + +++        NTL+    
Sbjct: 312 DRML-----LRGFY-PDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYV 365

Query: 139 KKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
              +L EA   L E M+  G  P IFTY  L++G C  G ++ A  L + M+R+G  P+V
Sbjct: 366 MSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNV 425

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y++L+NG CK   +EEA  V  EM   G            +   +   N  I  LC+ 
Sbjct: 426 ITYAILVNGLCKAGLLEEAGLVLHEMSARG------------LTINSVIYNCLICALCRK 473

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V   + L   +    C+  +  +NSLI G CK    + A  LF+ +     VA+ V Y
Sbjct: 474 EKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTY 533

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N LIHAL + G  +K   L+  M   GC LD  T+N L+ +F
Sbjct: 534 NTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAF 575



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 162/367 (44%), Gaps = 50/367 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH--- 82
           TFN +I G C    I DA++LV +M   G  P+  T   L+ GL R G +N   K+    
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI 349

Query: 83  --------QEMVNG-----------------MGDFGGIYKPNVFCYGSLIDGLCKDRLVD 117
                     ++NG                 M +FG  ++P++F Y  L+ GLCK+  + 
Sbjct: 350 PCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFG--FQPDIFTYNILMHGLCKEGSLS 407

Query: 118 QTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
             +DL  EM  +G   N +        LCK   L EA  +L  M  RGL      Y  L+
Sbjct: 408 FARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLI 467

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
              C   KV+VA+ L   M  KG  PD+F+Y+ LI G CK   ++EA  +   M+L+G  
Sbjct: 468 CALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG-- 525

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                      V    T N  I  L + G   + + L   +    C L    +N LI+  
Sbjct: 526 ----------AVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAF 575

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G  E   EL+ ++    L AD ++ NI+I+ L K G++      L      G   D+
Sbjct: 576 CKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDI 635

Query: 350 DTFNTLM 356
            T+N+++
Sbjct: 636 VTYNSVL 642



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 153/351 (43%), Gaps = 50/351 (14%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT-LKLHQE 84
           T+N L+ G C EG++  A  LV +M+  GC PNV T   L+ GL + G +    L LH+ 
Sbjct: 392 TYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEM 451

Query: 85  MVNGMGDFGGIY----------------------------KPNVFCYGSLIDGLCKDRLV 116
              G+     IY                            KP++F Y SLI GLCK   +
Sbjct: 452 SARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRI 511

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           D+   LF  M   G  AN +        L ++    +A  L+  M+ RG      TY  L
Sbjct: 512 DEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGL 571

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           +  +C VG +   + L++ M   G   D  S +++ING CK   V+ A    R+ I  GF
Sbjct: 572 IKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGF 631

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                       VP+  T N  ++GLCK G + E + LF  L++         +N+ I  
Sbjct: 632 ------------VPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISW 679

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            CK G+   A   F +      V   + +N+L++ L K+   ++ N+ +L 
Sbjct: 680 QCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSN-QENNFFVLD 729



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 166/360 (46%), Gaps = 37/360 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKM-ATFGCRPNVTTCDTLITGLRRTGN-MNLTLKLHQE 84
           F  ++K +   G    A +L+  M A + C P   + D L+  +  TGN   +   +  +
Sbjct: 150 FMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYD-LVLEILVTGNCPQVATNVFYD 208

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M++      G+  P VF +G ++  LC    VD    L  +M   G   N++        
Sbjct: 209 MLSK-----GV-SPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHA 262

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L +K ++ EA +LLE M   G  P + T+  +++G C V K++ A  L D M  +GF PD
Sbjct: 263 LSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPD 322

Query: 197 VFSYSVLINGYCKNFNVEEAM----------NVSREMILNGF---------KKIFNEMKL 237
             +Y  L++G C+   + EA           N     ++NG+         +   NE  +
Sbjct: 323 NMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMI 382

Query: 238 -CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
                P+ FT NI + GLCK G +    +L   +    CE  V  +  L+ G CK G+ E
Sbjct: 383 NFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLE 442

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A  + +++S + L  + V YN LI AL ++ ++     LL  M   GC  D+ T+N+L+
Sbjct: 443 EAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLI 502



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 16/210 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VT+N+LI      G  + A  LV  M   GC  +  T + LI    + GN+   L+L+
Sbjct: 529 NNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELY 588

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           ++M+ +G+G        +      +I+GLCK   VD   +   +  ++G   + +     
Sbjct: 589 EQMIMDGLG-------ADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSV 641

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++ EA  L + +   G+ P  FTY   ++  C  G VN A + F      GF
Sbjct: 642 LNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGF 701

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           +P   +++VL+    K  N E    V  E+
Sbjct: 702 VPSNLTWNVLVYTLLKQSNQENNFFVLDEL 731


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 168/353 (47%), Gaps = 25/353 (7%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C + +N     SL+KG+CM+GN+R A  LV +++  G  PN  T   LI G  + GN+  
Sbjct: 257 CGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEK 316

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI----NA 133
             + + EM        GI + +V+   S+++G  K +       +F +  + G+      
Sbjct: 317 AFEFYSEMKTK-----GI-RSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTF 370

Query: 134 NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           NTLL   CK+ K+ EA  L + ++ +G++P + +Y  ++ G+C    +N A  ++  M  
Sbjct: 371 NTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLD 430

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            GF P+  ++++L++GY K  ++E A +            IF+ MK  N++P   T  I 
Sbjct: 431 NGFTPNAVTFTILMDGYFKKGDIENAFS------------IFHRMKDANILPTDTTLGII 478

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           I GLCK G   E  +LF              +N++I G  K G   +AS ++ ++    +
Sbjct: 479 IKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGI 538

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               V Y  LI    K   I     LL  M+  G  +D+  + TL+  F ++ 
Sbjct: 539 TPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRR 591



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 166/384 (43%), Gaps = 63/384 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TFN+L+   C EG + +A  L  ++   G  PNV + + +I G  R  N+N   K++
Sbjct: 366 NVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVY 425

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTL--- 136
           +EM+ NG       + PN   +  L+DG  K   ++    +F  MKD  I     TL   
Sbjct: 426 KEMLDNG-------FTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGII 478

Query: 137 ---LCKKTKLVE-----------------------------------ANRLLELMMQRGL 158
              LCK  +  E                                   A+ +   M + G+
Sbjct: 479 IKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGI 538

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P   TYT L++G+C    +++A+ L + M RKG   D+ +Y  LI+G+CK  +++ A  
Sbjct: 539 TPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSA-- 596

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                      ++ NE++   + P  F  N  I G     +V E ++L+  +        
Sbjct: 597 ----------HELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCD 646

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           ++ + SLI G  K G    AS++  ++  K ++ D  A+ +LI+ L  +GQ +    +L 
Sbjct: 647 LKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILE 706

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            M        V  +NTL+    ++
Sbjct: 707 DMNGKNMIPSVLIYNTLIAGHFKE 730



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 26/308 (8%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           D T   +IKG C  G   +   L  K  + G  P     +T+I G  + GN+NL   +++
Sbjct: 472 DTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYR 531

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL- 137
           EM        GI  P+   Y SLIDG CK   +D    L  +MK KG+  +     TL+ 
Sbjct: 532 EMCEV-----GI-TPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLID 585

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             CK+  +  A+ LL  +   GL+P  F Y  ++ G+  +  V  AI L+  M  +G   
Sbjct: 586 GFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPC 645

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D+ +Y+ LI+G  K+  +  A ++  EM+  G            ++P+     + I+GLC
Sbjct: 646 DLKTYTSLIDGLLKSGRLLYASDIHTEMLSKG------------ILPDDRAHTVLINGLC 693

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
             G      ++   +   N    V I+N+LI G  K G  + A  L +++  + LV D +
Sbjct: 694 NKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNI 753

Query: 316 AYNILIHA 323
            Y+IL++ 
Sbjct: 754 TYDILVNG 761



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 62/286 (21%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F  F+ + + P   + +N++I GF  EGNI  AS + ++M   G  P+  T  +LI G  
Sbjct: 495 FNKFVSQGFVPTC-MPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFC 553

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           +  N++L LKL    +N M   G   K ++  YG+LIDG CK R +    +L  E++  G
Sbjct: 554 KGNNIDLALKL----LNDMKRKG--LKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAG 607

Query: 131 INANTL-------------------------------------------LCKKTKLVEAN 147
           ++ N                                             L K  +L+ A+
Sbjct: 608 LSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYAS 667

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +   M+ +G+ P    +T L+NG C  G+   A  + + M  K  +P V  Y+ LI G+
Sbjct: 668 DIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGH 727

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            K  N++EA  +  EM+  G            +VP+  T +I ++G
Sbjct: 728 FKEGNLQEAFRLHDEMLDRG------------LVPDNITYDILVNG 761



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 15/229 (6%)

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           T   K+  + EA RL + M+  G +  +   T L+ GYC+ G +  A+ L + ++  G +
Sbjct: 236 TACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLV 295

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +YSVLI+G CKN N+E+A             + ++EMK   +    ++ N  ++G 
Sbjct: 296 PNKVTYSVLIDGCCKNGNIEKAF------------EFYSEMKTKGIRSSVYSLNSILEGY 343

Query: 255 CKNGHVLEVMELF-PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            K         +F   LE     +F   FN+L+   CK G    A  L++++  K +  +
Sbjct: 344 LKCQSWQNAFTMFNDALESGLANVFT--FNTLLSWLCKEGKMNEACNLWDEVIAKGISPN 401

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           VV+YN +I    ++  I     +   M +NG   +  TF  LM  + +K
Sbjct: 402 VVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKK 450



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 115/254 (45%), Gaps = 21/254 (8%)

Query: 118 QTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           + +  F++ K +G+  +         LLC K     A  LL  M   G  P   T+T ++
Sbjct: 176 EAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVI 235

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
                 G V  A+ L D M   G   ++   + L+ GYC   N+  A+            
Sbjct: 236 TACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSAL------------ 283

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            + NE+    +VP   T ++ IDG CKNG++ +  E +  ++       V   NS++ G 
Sbjct: 284 VLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGY 343

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
            K   ++ A  +FN  + ++ +A+V  +N L+  L KEG++ +   L   +   G + +V
Sbjct: 344 LKCQSWQNAFTMFND-ALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNV 402

Query: 350 DTFNTLMISFLQKE 363
            ++N +++   +K+
Sbjct: 403 VSYNNIILGHCRKD 416


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 157/340 (46%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI G+C +G    A +++  M +  C PN  T + LI G  R  N++  + L  +
Sbjct: 380 VTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHK 439

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+          +PNV  Y  LI G CK+  +     L   M + G+  +          
Sbjct: 440 MLERK------LQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDT 493

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK+  + EA  L E + ++G+      Y+ L++GYC VGKV+    L D M   G +P+
Sbjct: 494 LCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPN 553

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+GYCK  N +EA  +   MI              ++ P   T  I ID L K
Sbjct: 554 SITYNSLIDGYCKEKNFKEARLLVDIMIKR------------DIEPAADTYTILIDNLLK 601

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +    +  ++F  +  +     V I+ + I   C  G  + A  L  K++ K ++ D + 
Sbjct: 602 DDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTML 661

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y + I A G+ G I     +L  M E GC     T++ L+
Sbjct: 662 YTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLI 701



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 160/349 (45%), Gaps = 26/349 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V++ +LI GFC    + +A +L  +M    C P V T   +I  L + G     L + 
Sbjct: 273 NEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMF 332

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           +EM           +PNV  Y  LI  LC+D   D  K +   M +KG     +  N L+
Sbjct: 333 KEMTEKHC------QPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALI 386

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CKK     A  +L LM     +P   TY  L+ G+C    ++ A++L   M  +   
Sbjct: 387 DGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQ 446

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V +Y++LI+G CK  ++  A             K+ + M    +VP+ +T ++FID L
Sbjct: 447 PNVVTYNILIHGQCKEGDLGSAY------------KLLSLMNESGLVPDEWTYSVFIDTL 494

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G V E   LF +L+    +    I+++LI G CK G       L +K+     V + 
Sbjct: 495 CKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNS 554

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + YN LI    KE   K+   L+  M +       DT+  L+ + L+ +
Sbjct: 555 ITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDD 603



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 149/314 (47%), Gaps = 26/314 (8%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           PN+ T +T++ G  + GN+ +  +L+   +   G        + F Y SLI G C+++ V
Sbjct: 202 PNIFTLNTMVNGYCKLGNV-VEAELYVSKIVQAG-----LSLDTFTYTSLILGYCRNKNV 255

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           D    +F+ M +KG   N +         C+  ++ EA +L   M +    P + TYT +
Sbjct: 256 DAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVI 315

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           +   C +G+   A+ +F  M  K   P+V +Y+VLI   C++ N ++A            
Sbjct: 316 IFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDA------------ 363

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           KKI N M    ++P   T N  IDG CK G     +E+   +E +NC      +N LI G
Sbjct: 364 KKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILG 423

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C+      A  L +K+  + L  +VV YNILIH   KEG +     LL  M E+G   D
Sbjct: 424 FCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPD 483

Query: 349 VDTFNTLMISFLQK 362
             T++  + +  ++
Sbjct: 484 EWTYSVFIDTLCKR 497



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 134/272 (49%), Gaps = 20/272 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           +K  + CY  L+  L +  ++D+ K +++EM D  +  N           CK   +VEA 
Sbjct: 165 FKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAE 224

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
             +  ++Q GL+   FTYT L+ GYC    V+ A A+F SM  KG + +  SY+ LI+G+
Sbjct: 225 LYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGF 284

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C+   V+EA+            K+F++M   N  P   T  + I  LC+ G   E + +F
Sbjct: 285 CEARRVDEAL------------KLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMF 332

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +   +C+  V  +  LI   C+   F+ A ++ N +  K L+  VV YN LI    K+
Sbjct: 333 KEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKK 392

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           G       +L  ME N C+ +  T+N L++ F
Sbjct: 393 GLSASALEILSLMESNNCSPNARTYNELILGF 424



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 150/342 (43%), Gaps = 26/342 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  +I   C  G   +A  + K+M    C+PNV T   LI  L    N +   K+    
Sbjct: 311 TYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKI---- 366

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTL------L 137
           +NGM + G I  P+V  Y +LIDG CK  L     ++   ME  +   NA T        
Sbjct: 367 LNGMLEKGLI--PSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGF 424

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+   + +A  LL  M++R L P + TY  L++G C  G +  A  L   M   G +PD 
Sbjct: 425 CRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDE 484

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           ++YSV I+  CK   VEEA            + +F  +K   +       +  IDG CK 
Sbjct: 485 WTYSVFIDTLCKRGLVEEA------------RSLFESLKEKGIKANEVIYSTLIDGYCKV 532

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V +   L   +  + C      +NSLI G CK   F+ A  L + +  +++      Y
Sbjct: 533 GKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTY 592

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            ILI  L K+ +  + + +   M   G   DV  +   + ++
Sbjct: 593 TILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAY 634



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 157/398 (39%), Gaps = 68/398 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V +++LI G+C  G + D   L+ KM + GC PN  T ++LI G  +  N      L 
Sbjct: 518 NEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLV 577

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
             M+          +P    Y  LID L KD   DQ  D+F +M   G + +  +     
Sbjct: 578 DIMIKR------DIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFI 631

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C   +L +A  L+  M  +G+ P    YT  ++ Y   G ++ A  +   M   G  
Sbjct: 632 HAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCE 691

Query: 195 PDVFSYSVLINGYCKNFNVEEAM----------NVSREMILNGFKKI--------FNEMK 236
           P  ++YS LI  +  N   +E             V+     N ++++        F +M 
Sbjct: 692 PSYYTYSCLIK-HLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMA 750

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
                P   T   FI GLCK G +     LF  ++        +I+NSL+   C+ G++ 
Sbjct: 751 EHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYG 810

Query: 297 IASELFNKL----------SCKNLVA-------------------------DVVAYNILI 321
            A    + +          SCK L+                          D + + +LI
Sbjct: 811 EAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLI 870

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             L K+G   K + L   ME  GC +   T++ L+  F
Sbjct: 871 DGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGF 908



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 30/241 (12%)

Query: 132 NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYT------------PLLNGYCLVGKV- 178
           N   L+ K T   E N L  L M R +N  +  +              LL+ + ++ ++ 
Sbjct: 131 NMRILMIKSTDSSE-NALFVLEMLRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMK 189

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           +V + + D M      P++F+ + ++NGYCK  NV EA     +++  G           
Sbjct: 190 SVYLEMLDDMV----TPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSL-------- 237

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
               +TFT    I G C+N +V     +F ++    C      + +LI G C+    + A
Sbjct: 238 ----DTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEA 293

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            +LF+++   N    V  Y ++I AL + G+  +   +   M E  C  +V T+  L+ S
Sbjct: 294 LKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICS 353

Query: 359 F 359
            
Sbjct: 354 L 354


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 156/342 (45%), Gaps = 45/342 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EG I  A  +   +  +G RP+V + 
Sbjct: 115 KYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSF 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   KL     N M   G   +P+V+ Y  LI+GLCK+         
Sbjct: 175 NTLMNGYIRLGDLDQGFKLK----NAMHASG--VQPDVYTYSVLINGLCKE--------- 219

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ EAN L   M+ +GL P   T+T L++G+C  GKV+ A+
Sbjct: 220 ------------------SKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAM 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
             +  M  + F+PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 262 ETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLK------------P 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    EL  T+   +  L    + +LI G C+ G    A ++ 
Sbjct: 310 DKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKML 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            ++    L  D   Y ++I+   K+  +K    LL  M+  G
Sbjct: 370 REMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQG 411



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 158/345 (45%), Gaps = 26/345 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L    ++E++
Sbjct: 69  FSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKT 141
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYI 182

Query: 142 KLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +L + ++  +L   M   G+ P ++TY+ L+NG C   K+N A  LF+ M  KG +P+  
Sbjct: 183 RLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM   ++M+   F            +P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGKVDSAMETYKQMLSQCF------------LPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  + A EL   +  +++  D VAY 
Sbjct: 291 DLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            LI  L +EG+      +L  M   G   D  T+  ++  F +KE
Sbjct: 351 ALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKE 395



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 14/181 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A +  K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 240 NGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGD----LKQA 295

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           Q++++ M   G   KP+   Y +LIDG CK+  +D   +L   M  + I  + +      
Sbjct: 296 QDLLDEMRMKG--LKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALI 353

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ +  +A ++L  M+  GL P   TYT ++N +C    V  A  L   M R+G +
Sbjct: 354 SGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHV 413

Query: 195 P 195
           P
Sbjct: 414 P 414



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 42/244 (17%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM-P 195
           LC    L+EA  L+++++ R                   GK + +      +  KG    
Sbjct: 23  LCTHQMLLEAKSLIQIVVSRK------------------GKDSASAVFAAILETKGTQRS 64

Query: 196 DVFSYSVLINGYCKNFNVEEAM---NVSRE-----------------MILNGFKKI---F 232
           D++ +S LIN Y ++  V +A+    ++RE                 M L  FK +   +
Sbjct: 65  DIYVFSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            E+  C      +  NI +   CK G +     +F ++        V  FN+L+ G  + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRL 184

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  +   +L N +    +  DV  Y++LI+ L KE ++ + N L   M + G   +  TF
Sbjct: 185 GDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTF 244

Query: 353 NTLM 356
            TL+
Sbjct: 245 TTLI 248


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 170/369 (46%), Gaps = 36/369 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+  ++ SLI  F   G  R+A  + KKM   GC+P + T + ++      G M      
Sbjct: 206 LDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVF---GKMGTPWNK 262

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
              +V  M   G    P+ + Y +LI    +  L  +   +F EMK  G     +  N L
Sbjct: 263 ITSLVEKMKSDG--IAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNAL 320

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L    K  +  EA ++L  M+  G +P I TY  L++ Y   G ++ A+ L + MA KG 
Sbjct: 321 LDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGT 380

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
            PDVF+Y+ L++G+ +   VE AM++  EM   G K                       K
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK 440

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           IF+E+ +C + P+  T N  +    +NG   EV  +F  ++ +      E FN+LI    
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYS 500

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           + G FE A  ++ ++    +  D+  YN ++ AL + G  ++   +L  ME+  C  +  
Sbjct: 501 RCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNEL 560

Query: 351 TFNTLMISF 359
           T+ +L+ ++
Sbjct: 561 TYCSLLHAY 569



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 124/298 (41%), Gaps = 37/298 (12%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN+LI  +   G+   A  + ++M   G  P+++T +T++  L R G    + K+  EM
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV- 144
            +G        KPN   Y SL+      + +     L  E+    I    +L K   LV 
Sbjct: 551 EDGRC------KPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVC 604

Query: 145 -------EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
                  EA R    + +RG +P I T   +++ Y     V  A  + D M  +GF P +
Sbjct: 605 SKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSM 664

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNE 234
            +Y+ L+  + ++ +  ++  + RE++  G K                       +IF+E
Sbjct: 665 ATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSE 724

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           M+   +VP+  T N FI     +    E + +   +    C      +NS++ G CK 
Sbjct: 725 MRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKL 782



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/395 (19%), Positives = 159/395 (40%), Gaps = 60/395 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLI  +  +G + +A +L  +MA  G +P+V T  TL++G  R G +   + + +E
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409

Query: 85  MVNG------------------MGDFGGIYK-----------PNVFCYGSLIDGLCKDRL 115
           M N                    G F  + K           P++  + +L+    ++ +
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGM 469

Query: 116 VDQTKDLFMEMKDKGI-----NANTLLCKKTK---LVEANRLLELMMQRGLNPVIFTYTP 167
             +   +F EMK  G        NTL+   ++     +A  +   M+  G+ P + TY  
Sbjct: 470 DSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNT 529

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---- 223
           +L      G    +  +   M      P+  +Y  L++ Y     +    +++ E+    
Sbjct: 530 VLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGV 589

Query: 224 -------------------ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
                              +L   ++ F+E+K     P+  T N  +    +   V +  
Sbjct: 590 IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKAN 649

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            +   ++       +  +NSL+    +   F  + E+  ++  K +  D+++YN +I+A 
Sbjct: 650 GVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAY 709

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +  +++  + +   M  +G   DV T+NT + S+
Sbjct: 710 CRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSY 744



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 125/287 (43%), Gaps = 25/287 (8%)

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
           M NG+ + G  +  +V+ Y SLI          +  ++F +M++ G     I  N +L  
Sbjct: 195 MFNGLQEDG--FSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNV 252

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV-AIALFDSMARKGFM 194
                T   +   L+E M   G+ P  +TY  L+   C  G ++  A  +F+ M   GF 
Sbjct: 253 FGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITC-CKRGSLHQEAAQVFEEMKAAGFS 311

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  +Y+ L++ Y K+   +EAM V  EM+LNGF             P   T N  I   
Sbjct: 312 YDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFS------------PSIVTYNSLISAY 359

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            ++G + E MEL   +     +  V  + +L+ G  + G  E A  +F ++       ++
Sbjct: 360 ARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNI 419

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             +N  I   G  G+  +   +   +   G + D+ T+NTL+  F Q
Sbjct: 420 CTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQ 466



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 114/268 (42%), Gaps = 32/268 (11%)

Query: 121 DLFMEMKD-KGINANT-------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           D FM+ KD + +  N+       +L K+ ++  A  +   + + G +  +++YT L++ +
Sbjct: 159 DWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAF 218

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN-------GYCKNFNVEEAMNVS----- 220
              G+   A+ +F  M   G  P + +Y+V++N        + K  ++ E M        
Sbjct: 219 ANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPD 278

Query: 221 ------------REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
                       R  +     ++F EMK      +  T N  +D   K+    E M++  
Sbjct: 279 AYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLN 338

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            + ++     +  +NSLI    + G+ + A EL N+++ K    DV  Y  L+    + G
Sbjct: 339 EMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAG 398

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
           +++    +   M   GC  ++ TFN  +
Sbjct: 399 KVESAMSIFEEMRNAGCKPNICTFNAFI 426



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 87/185 (47%), Gaps = 18/185 (9%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDF--GGIYKPN 99
           +A +   ++   G  P++TT +++++     G   +  K      NG+ D+     + P+
Sbjct: 612 EAERAFSELKERGFSPDITTLNSMVSIY---GRRQMVAK-----ANGVLDYMKERGFTPS 663

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---CKKTKLVEANRLLE 151
           +  Y SL+    +     +++++  E+  KGI       NT++   C+ T++ +A+R+  
Sbjct: 664 MATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFS 723

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            M   G+ P + TY   +  Y        AI +   M + G  P+  +Y+ +++GYCK  
Sbjct: 724 EMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLN 783

Query: 212 NVEEA 216
             +EA
Sbjct: 784 RKDEA 788



 Score = 45.4 bits (106), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +++N++I  +C    +RDAS++  +M   G  P+V T +T I            + + + 
Sbjct: 700 ISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRY 759

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           M+ +G        +PN   Y S++DG CK    D+ K LF+E
Sbjct: 760 MIKHGC-------RPNQNTYNSIVDGYCKLNRKDEAK-LFVE 793


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 161/352 (45%), Gaps = 24/352 (6%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +   A+  F S+I+      +  +FN +IKG C  GN + A +LV++M  FGC P+  T 
Sbjct: 197 RAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITH 256

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + L+ GL R   +N    L + +        G+  PNV  Y S+I G CK   ++    +
Sbjct: 257 NILVDGLCRAKQVNRGHDLLRRLQRD-----GVCMPNVVTYTSVISGYCKAGRMEDALSV 311

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           + +M + G   NT+          K   +  A R+   ++ R   P + T++ L++GYC 
Sbjct: 312 YNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCR 371

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G+++ A+ ++  M +    P+V+++S++I+  CK     EA+   RE+ +         
Sbjct: 372 CGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRA------- 424

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
               ++ P+TF  N  ID LCK G V E   +   +E   C      +  LI G C  G 
Sbjct: 425 ----DIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGR 480

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
              A  LF+K+       D +  N  I  + K G   + + ++L    +  A
Sbjct: 481 IPEAITLFHKMVETGCRPDKITVNSFISCVLKAGMPNEVDQIMLIASGHASA 532



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 169/355 (47%), Gaps = 34/355 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDAS-QLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           L D  F S + G C    + DA+  L+ K + FG R      + L+  L   G     + 
Sbjct: 144 LPDAVFFSFVAGSCTNAGLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVA 203

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L +  +       G+Y P+ + +  +I G+C+     +  +L   M + G + +T+    
Sbjct: 204 LFESWIQD-----GLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNI 258

Query: 137 ----LCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
               LC+  ++   + LL  + + G+  P + TYT +++GYC  G++  A+++++ M   
Sbjct: 259 LVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLES 318

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+  +Y+VLINGY K  ++E A+ + R++IL          + C   P+  T +  I
Sbjct: 319 GTRPNTVTYNVLINGYGKALDMESAVRMYRQLIL----------RRCP--PDVVTFSSLI 366

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           DG C+ G + + M ++  +   + +  V  F+ +I   CK      ++E    L   N+ 
Sbjct: 367 DGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCK---QNRSAEALGFLRELNMR 423

Query: 312 ADVVA----YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           AD+      YN +I  L K GQ+++ N ++  MEE GC  D  T+  L+I    K
Sbjct: 424 ADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMK 478


>gi|449523852|ref|XP_004168937.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Cucumis sativus]
          Length = 683

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 182/401 (45%), Gaps = 75/401 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+++LI   C  G+I  A   + +M    C PNV T  +LI G  + G ++   K+ 
Sbjct: 114 NYITYSALIDSRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVL 173

Query: 83  QEMV--NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-- 138
           ++MV  N M        PN+  Y  L+DG  K    D   DL+ +MK  G+  N  +   
Sbjct: 174 RKMVHKNAM--------PNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDA 225

Query: 139 ------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 +  ++ EA  L+  M   GL P +  YT L++G+   GKV+ A+ L   M  K 
Sbjct: 226 FVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKN 285

Query: 193 FMPDVFSYSVLINGYCK--NFNVEEAMNVSREM-----------ILNG-FKK-------- 230
            + D+ +++VLIN   K    + E   +  REM           +LNG FKK        
Sbjct: 286 VVFDIVTFNVLINCLFKLGKSDTESIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALE 345

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHV---------LEVMELFPT-------LEISN 274
           ++NEMK   ++P   TCNI I+GLC+ G +         + +M L+PT       L IS+
Sbjct: 346 LWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISS 405

Query: 275 -----------CELFV--------EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
                       EL V        +++N LI   CK G+   A+ +   +  + ++AD  
Sbjct: 406 KSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTT 465

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            YN LIH       +K+      +M     + D++T+N L+
Sbjct: 466 TYNALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLL 506



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 172/393 (43%), Gaps = 59/393 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T++SLI G+  +G + DA ++++KM      PN+ T   L+ G  + G  ++ L L+
Sbjct: 149 NVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLY 208

Query: 83  QEM---------------VNGMGDFG--------------GIYKPNVFCYGSLIDGLCKD 113
            +M               VN M   G              G  KP++  Y +L+DG  K 
Sbjct: 209 SKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKS 268

Query: 114 RLVDQTKDLFMEMKDKGI-----NANTLLCKKTKLVEAN--RLLELMMQRGLNPVIFTYT 166
             V    +L  EM  K +       N L+    KL +++   +   M + GL+P + TY 
Sbjct: 269 GKVSSALNLAQEMTSKNVVFDIVTFNVLINCLFKLGKSDTESIYSAMREMGLSPDLATYN 328

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            +LNG    G    A+ L++ M  +  +P+  + +++ING C+   +E A+++ +EM+L 
Sbjct: 329 TMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLM 388

Query: 227 GFKK----------IFNEMKLCNVVPETFTC-------------NIFIDGLCKNGHVLEV 263
           G             I ++ +  + + +T                NI I  LCK G   + 
Sbjct: 389 GLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKA 448

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             +   +E          +N+LI G C     + A   ++ +  + +  D+  YN+L+  
Sbjct: 449 TAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGG 508

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L K G I + + LL  +++ G   +  T+ TLM
Sbjct: 509 LSKAGLIHEADDLLSEIKKRGLVPNACTYETLM 541



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 138/306 (45%), Gaps = 28/306 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            T+N+++ G   +GN   A +L  +M +    PN  TC+ +I GL   G M   + + +E
Sbjct: 325 ATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKE 384

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD---QTKDLFMEMK---DKGINANTL-- 136
           MV       G+Y P    Y  L++   K R  D   QT +L + M+   DK +  N L  
Sbjct: 385 MV-----LMGLY-PTSTTYRILLNISSKSRRADTILQTHELLVNMQLKVDKDV-YNILIS 437

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LCK     +A  +L+ M +RG+     TY  L++GYC+   +  A   + +M  +   P
Sbjct: 438 NLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVSP 497

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D+ +Y++L+ G  K   + EA              + +E+K   +VP   T    + G C
Sbjct: 498 DIETYNLLLGGLSKAGLIHEA------------DDLLSEIKKRGLVPNACTYETLMCGHC 545

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K  +  E + ++  + I         +N LI    K G  + A EL N++  K +     
Sbjct: 546 KVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQAKELMNEMQTKGVSPTCT 605

Query: 316 AYNILI 321
            Y+ILI
Sbjct: 606 TYDILI 611



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 127/282 (45%), Gaps = 40/282 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T N +I G C  G + +A  ++K+M   G  P  TT   L+    ++   +  L+ H
Sbjct: 358 NAITCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTH 417

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + +VN         K +   Y  LI  LCK  +  +   +  +M+++GI A+T       
Sbjct: 418 ELLVNMQ------LKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNALI 471

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C  + L  A      M+   ++P I TY  LL G    G ++ A  L   + ++G +
Sbjct: 472 HGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLV 531

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
           P+  +Y  L+ G+CK  N +E + +  EM++ GF                       K++
Sbjct: 532 PNACTYETLMCGHCKVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQAKEL 591

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
            NEM+   V P   T +I I G C   ++L++ +L  TL+IS
Sbjct: 592 MNEMQTKGVSPTCTTYDILICGWC---NLLKMPDLGSTLKIS 630



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 130/276 (47%), Gaps = 21/276 (7%)

Query: 94  GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVE 145
           GI+ P+V  +GS++ GLCK   + + K L  EM   G+N N +        L K  K+ E
Sbjct: 5   GIF-PDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGKVAE 63

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A   L  M+ RG N  +   T L++G    G++  A  LF ++ +   +P+  +YS LI+
Sbjct: 64  ALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSALID 123

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
             CK  ++            NG +   +EM+  + VP   T +  I+G  K G + +  +
Sbjct: 124 SRCKLGDI------------NGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFK 171

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +   +   N    +  +  L+ G  K G  +IA +L++K+    L  +V   +  ++ + 
Sbjct: 172 VLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMK 231

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           + G++++   L+  M   G   D+  +  LM  FL+
Sbjct: 232 RSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLK 267



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 12/175 (6%)

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M   G  PDV ++  ++ G CK+  + E   + REM   G       M L NV   ++T 
Sbjct: 1   MVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMG-------MNLNNV---SYT- 49

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
            I +D L K G V E +     + +      V     LI G  K G  + A  LF  L  
Sbjct: 50  -ILLDALFKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQ 108

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            NLV + + Y+ LI +  K G I      L  MEE  C  +V T+++L+  ++++
Sbjct: 109 LNLVPNYITYSALIDSRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQ 163


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 170/356 (47%), Gaps = 26/356 (7%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G  +++ +R +  + FN L+KG C +    DA  +V + M    C PNV +   ++ G
Sbjct: 112 ALGHVVKKGFR-VEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKG 170

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L    E+++ M D GG   PNV  Y ++IDGL K    D+    + EM D
Sbjct: 171 LCHENRSQEAL----ELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLD 226

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           + I  N +        LCK   + +A  + + M++ G+ P  FTYT L++G+C  G++  
Sbjct: 227 RRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTE 286

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           AI   + M   G  P+V +YS  ++  CKN    EA            +KIF+ M    +
Sbjct: 287 AIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEA------------RKIFDSMVKRGL 334

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T +  + G    G ++E+  LF  +  S+ +    +FN+LI    K G  + A  
Sbjct: 335 KPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAML 394

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +F+K+  + L  + V Y+ LI+   K  +++    L   M  NG + +  T+N ++
Sbjct: 395 VFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIML 450



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 124/289 (42%), Gaps = 63/289 (21%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V+++++I G    G+   A    ++M      PNV    ++I  L +   M+  +++H
Sbjct: 197 NVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVH 256

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             MV NG+        PN F Y SL+ G C    + +      +M   G+  N +     
Sbjct: 257 DRMVKNGV-------TPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSF 309

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL------------------- 174
              LCK  +  EA ++ + M++RGL P I TY+ LL+GY +                   
Sbjct: 310 MDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDM 369

Query: 175 ----------------VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
                            GKV+ A+ +F  M ++G  P+  +YS LINGYCK   +E A+ 
Sbjct: 370 QPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALA 429

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           + +EM+ NG            V P   T NI + GL + G      E +
Sbjct: 430 LFQEMVSNG------------VSPNFITYNIMLQGLFRTGRTATAKEFY 466



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 96/204 (47%), Gaps = 13/204 (6%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A    + +KGF  +   ++ L+ G C +   ++AM
Sbjct: 86  VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAM 145

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL--EISNC 275
           ++    +L G  ++       + VP  F+  I + GLC      E +EL   +  +   C
Sbjct: 146 DI----VLRGMTEL-------SCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGC 194

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              V  ++++I G  K G  + A   + ++  + ++ +VV Y+ +I AL K   + K   
Sbjct: 195 LPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAME 254

Query: 336 LLLSMEENGCALDVDTFNTLMISF 359
           +   M +NG   +  T+ +L+  F
Sbjct: 255 VHDRMVKNGVTPNCFTYTSLVHGF 278


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 26/328 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N ++ G C EG + DA + +K + ++GC PN  + + ++ GL          KL +E
Sbjct: 237 VTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEE 296

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M +          PNV  +  LI  LC+  LV+   ++  +M   G   N+L        
Sbjct: 297 MAHKG------CPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHA 350

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+ +A   +ELM+ RG  P I +Y  LL   C  G+V+VAI L   +  KG  P 
Sbjct: 351 FCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPV 410

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + SY+ +I+G  K    +EA+ +  EM   G +            P+  T +    GLC+
Sbjct: 411 LISYNTVIDGLTKAGKTKEALELLDEMTSKGLQ------------PDIITYSTIASGLCR 458

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E +  F  ++         ++N+++ G CK      A +LF  +     + +   
Sbjct: 459 EDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNEST 518

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
           Y IL+  L  EG +K+   L   +   G
Sbjct: 519 YTILVEGLAYEGLVKEARELFAQLCSRG 546



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 158/346 (45%), Gaps = 26/346 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N+LI+G C  G   +A  +++ M   GC P+V T   L+    +       +KL  EM
Sbjct: 168 TYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEM 227

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                D G    P++  Y  +++G+C++  V+   +    +   G   NT+        L
Sbjct: 228 ----HDKG--CAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGL 281

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
               +  +A +L+E M  +G  P + T+  L++  C  G V  A+ + + M + G  P+ 
Sbjct: 282 FTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNS 341

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY+ L++ +CK   + +AM     M+  G              P+  + N  +  LC+N
Sbjct: 342 LSYNPLLHAFCKQKKIHKAMEFVELMVSRG------------CYPDIVSYNTLLTALCRN 389

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V   +EL   L+   C   +  +N++I G  K G  + A EL ++++ K L  D++ Y
Sbjct: 390 GEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITY 449

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + +   L +E +I++       +++ G       +N +++   ++ 
Sbjct: 450 STIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRR 495



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 151/337 (44%), Gaps = 29/337 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+++ G+C  G +  A +LV  M      P+  T +TLI GL   G  +  L + ++M 
Sbjct: 137 YNAMVAGYCGAGQLDAARRLVADMPV---EPDAYTYNTLIRGLCGRGRTSNALAVLEDM- 192

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
                F     P+V  Y  L++  CK     Q   L  EM DKG   + +        +C
Sbjct: 193 -----FRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGIC 247

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           ++ ++ +A   L+ +   G  P   +Y  +L G     +   A  L + MA KG  P+V 
Sbjct: 248 QEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVV 307

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           ++++LI+  C+   VE AM V  +M   G              P + + N  +   CK  
Sbjct: 308 TFNMLISFLCRRGLVEPAMEVLEQMPQYG------------CTPNSLSYNPLLHAFCKQK 355

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + + ME    +    C   +  +N+L+   C+ G  ++A EL ++L  K     +++YN
Sbjct: 356 KIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYN 415

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
            +I  L K G+ K+   LL  M   G   D+ T++T+
Sbjct: 416 TVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTI 452



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 148/351 (42%), Gaps = 64/351 (18%)

Query: 29  SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
           +LIK  C  G   DA ++   +A  G  P+V   + ++ G    G ++   +L  +M   
Sbjct: 109 ALIKKLCASGRTADARRV---LAASG--PDVMVYNAMVAGYCGAGQLDAARRLVADMP-- 161

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANR 148
                   +P+ + Y +LI GLC                 +G  +N L            
Sbjct: 162 -------VEPDAYTYNTLIRGLC----------------GRGRTSNALA----------- 187

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +LE M +RG  P + TYT LL   C       A+ L D M  KG  PD+ +Y+V++NG C
Sbjct: 188 VLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGIC 247

Query: 209 KNFNVEEAM--------------NVSREMILNGF---------KKIFNEMKLCNVVPETF 245
           +   VE+AM               VS  ++L G          +K+  EM      P   
Sbjct: 248 QEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVV 307

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T N+ I  LC+ G V   ME+   +    C      +N L+   CK      A E    +
Sbjct: 308 TFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELM 367

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             +    D+V+YN L+ AL + G++     LL  +++ GC+  + ++NT++
Sbjct: 368 VSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVI 418



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 154/358 (43%), Gaps = 27/358 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL       RR   P + VT+  L++  C     + A +L+ +M   GC P++ T + ++
Sbjct: 185 ALAVLEDMFRRGCLP-DVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVL 243

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G+ + G +   +    E +  +  +G   +PN   Y  ++ GL      +  + L  EM
Sbjct: 244 NGICQEGRVEDAM----EFLKNLPSYG--CEPNTVSYNIVLKGLFTAERWEDAEKLMEEM 297

Query: 127 KDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             KG   N        + LC++  +  A  +LE M Q G  P   +Y PLL+ +C   K+
Sbjct: 298 AHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKI 357

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + A+   + M  +G  PD+ SY+ L+   C+N  V+ A+            ++ +++K  
Sbjct: 358 HKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAI------------ELLHQLKDK 405

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P   + N  IDGL K G   E +EL   +     +  +  ++++  G C+    E A
Sbjct: 406 GCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEA 465

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              F K+    +      YN ++  L K  +      L   M  +GC  +  T+  L+
Sbjct: 466 VRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILV 523



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 141/301 (46%), Gaps = 28/301 (9%)

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYG---SLIDGLCKD-RLVDQTKDLFM 124
           L R G ++  L+L       +    G+  P+    G   +LI  LC   R  D  + L  
Sbjct: 77  LVRRGELDDALRL-------VDSLAGLNPPSPAAVGPCAALIKKLCASGRTADARRVLAA 129

Query: 125 EMKDKGI-NANTL-LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
              D  + NA     C   +L  A RL+  M    + P  +TY  L+ G C  G+ + A+
Sbjct: 130 SGPDVMVYNAMVAGYCGAGQLDAARRLVADM---PVEPDAYTYNTLIRGLCGRGRTSNAL 186

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
           A+ + M R+G +PDV +Y++L+   CK    ++AM            K+ +EM      P
Sbjct: 187 AVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAM------------KLLDEMHDKGCAP 234

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T N+ ++G+C+ G V + ME    L    CE     +N +++G      +E A +L 
Sbjct: 235 DIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLM 294

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +++ K    +VV +N+LI  L + G ++    +L  M + GC  +  ++N L+ +F ++
Sbjct: 295 EEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQ 354

Query: 363 E 363
           +
Sbjct: 355 K 355



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T++++  G C E  I +A +   K+   G RP     + ++ GL +    +  + L   
Sbjct: 447 ITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAY 506

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           M++     G +  PN   Y  L++GL  + LV + ++LF ++  +G+  N  L KK
Sbjct: 507 MISS----GCM--PNESTYTILVEGLAYEGLVKEARELFAQLCSRGV-VNKKLMKK 555


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 175/382 (45%), Gaps = 42/382 (10%)

Query: 10  AFGSFIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A G F    +R L  + VT+NS+I GF   G + D     ++M    C P+V T + LI 
Sbjct: 149 ARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 208

Query: 68  GLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
              + G + + L+ ++EM  NG+       KPNV  Y +L+D  CK+ ++ Q    +++M
Sbjct: 209 CFCKFGKLPIGLEFYREMKGNGL-------KPNVVSYSTLVDAFCKEGMMQQAIKFYVDM 261

Query: 127 KDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           +  G+  N           CK   L +A RL   M+Q G+   + TYT L++G C   ++
Sbjct: 262 RRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERM 321

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------- 230
             A  LF  M   G +P++ SY+ LI+G+ K  N++ A+ +  E+   G K         
Sbjct: 322 KEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 381

Query: 231 ---------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                          + NEMK C +   +      +D   K+G+  E + L   ++  + 
Sbjct: 382 IWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDI 441

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-NLVADVVAYNILIHALGKEGQIKKEN 334
           E+ V  F  LI G CK  +   A + FN++S    L A+   +  +I  L K+ Q++   
Sbjct: 442 EVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAAT 501

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L   M + G   D   + +LM
Sbjct: 502 TLFEQMVQKGLVPDRTAYTSLM 523



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 156/342 (45%), Gaps = 26/342 (7%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N L+  F   G   D  +  K M   G RP V T + +I  + + G++     L +EM  
Sbjct: 99  NGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEM-- 156

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLL---CK 139
               F G+  P+   Y S+IDG  K   +D T   F EMKD       I  N L+   CK
Sbjct: 157 ---KFRGLV-PDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCK 212

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             KL         M   GL P + +Y+ L++ +C  G +  AI  +  M R G +P+ ++
Sbjct: 213 FGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYT 272

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+ LI+  CK  N+ +A  +  EM+  G +         NVV  T+T    IDGLC    
Sbjct: 273 YTSLIDANCKIGNLSDAFRLGNEMLQVGVE--------WNVV--TYTA--LIDGLCDAER 320

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + E  ELF  ++ +     +  +N+LI G  K    + A EL N+L  + +  D++ Y  
Sbjct: 321 MKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGT 380

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            I  L    +I+    ++  M+E G   +   + TLM ++ +
Sbjct: 381 FIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFK 422



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 145/353 (41%), Gaps = 56/353 (15%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F++L       G + +A Q   KM  F   P   +C+ L+    + G  +   +  ++M+
Sbjct: 63  FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 122

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
                 G   +P VF Y  +ID +CK+  V+  + LF EMK                   
Sbjct: 123 ------GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMK------------------- 157

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
                    RGL P   TY  +++G+  VG+++  +  F+ M      PDV +Y+ LIN 
Sbjct: 158 --------FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINC 209

Query: 207 YCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPE 243
           +CK   +   +   REM  NG K                       K + +M+   +VP 
Sbjct: 210 FCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPN 269

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
            +T    ID  CK G++ +   L   +     E  V  + +LI G C     + A ELF 
Sbjct: 270 EYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFG 329

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K+    ++ ++ +YN LIH   K   + +   LL  ++  G   D+  + T +
Sbjct: 330 KMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 382



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 146/342 (42%), Gaps = 48/342 (14%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N VT+ +LI G C    +++A +L  KM T G  PN+ + + LI G  +  NM+  L+L
Sbjct: 303 WNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL 362

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
             E+  G G      KP++  YG+ I GLC    ++  K +  EMK+ GI AN+L+    
Sbjct: 363 LNEL-KGRG-----IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI---- 412

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                                  YT L++ Y   G     + L D M        V ++ 
Sbjct: 413 -----------------------YTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFC 449

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           VLI+G CKN  V +A++         F +I N+  L       FT    IDGLCK+  V 
Sbjct: 450 VLIDGLCKNKLVSKAVDY--------FNRISNDFGL-QANAAIFTA--MIDGLCKDNQVE 498

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
               LF  +           + SL+ G  K G    A  L +K++   +  D++AY  L+
Sbjct: 499 AATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLV 558

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             L    Q++K    L  M   G   D      L IS L+K 
Sbjct: 559 WGLSHCNQLQKARSFLEEMIGEGIHPD----EVLCISVLKKH 596



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 60/128 (46%)

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F++MK   V P+T +CN  +    K G   +V   F  +  +     V  +N +I   CK
Sbjct: 83  FSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCK 142

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A  LF ++  + LV D V YN +I   GK G++         M++  C  DV T
Sbjct: 143 EGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVIT 202

Query: 352 FNTLMISF 359
           +N L+  F
Sbjct: 203 YNALINCF 210



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 88/226 (38%), Gaps = 51/226 (22%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           + + I G C    I  A  ++ +M   G + N     TL+    ++GN    L L  EM 
Sbjct: 378 YGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMK 437

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-DKGINANTL--------L 137
               +   +     FC   LIDGLCK++LV +  D F  +  D G+ AN          L
Sbjct: 438 ELDIEVTVV----TFCV--LIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGL 491

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR------- 190
           CK  ++  A  L E M+Q+GL P    YT L++G    G V  A+AL D MA        
Sbjct: 492 CKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDL 551

Query: 191 ----------------------------KGFMPD-VFSYSVLINGY 207
                                       +G  PD V   SVL   Y
Sbjct: 552 LAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHY 597


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 155/343 (45%), Gaps = 24/343 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            ++ +++     G +  A ++ + M +  C P++ T + LI      G     L L Q M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                      +P+ + Y +LI GLC     +  + L  EM+DK I AN          L
Sbjct: 72  KREKR-----VEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSL 126

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K+ K  E+ ++LE MM  G NP +F +  ++ G+     +  A  ++  M   G+ PD 
Sbjct: 127 VKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDN 186

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY +LI+G  K   ++E++ +  EM           M+    VP   T +  I GLC+ 
Sbjct: 187 VSYHILIHGLAKIGKLDESLKILSEMA----------MRAAGYVPNVITFSTLIHGLCRT 236

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + + +E+F ++  + C+     + +LI G C+      A ELF K++   +  D VAY
Sbjct: 237 GELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAY 296

Query: 318 NILIHALGKEGQIKKENYLLLSMEEN-GCALDVDTFNTLMISF 359
           N LI    K G + +   L   M    G    + TFNTL+  F
Sbjct: 297 NSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGF 339



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 162/353 (45%), Gaps = 29/353 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F S  R      +  T+N+LI G C  GN   A +L+ +M       NV T  ++I
Sbjct: 64  ALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSII 123

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             L +      + K+ +EM+    +      P+VF +  ++ G  +   +++ ++++  M
Sbjct: 124 KSLVKEAKPEESYKVLEEMMAAGCN------PDVFAFNGVMQGFARSNNMEKAREVYQHM 177

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQR--GLNPVIFTYTPLLNGYCLVG 176
            + G   + +        L K  KL E+ ++L  M  R  G  P + T++ L++G C  G
Sbjct: 178 VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTG 237

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           ++  A+ +F SM   G  P+ ++Y+ LI G C+   V +A            +++F +M 
Sbjct: 238 ELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQA------------RELFEKMT 285

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE-ISNCELFVEIFNSLIRGCCKFGIF 295
              + P+    N  I G CK G + E  +L+  +   +  +  +  FN+LI G CK G  
Sbjct: 286 QACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKL 345

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             A+EL  ++  K L AD   Y ILI  L +  ++ +   +   M E    LD
Sbjct: 346 GRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLD 398



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 156/349 (44%), Gaps = 27/349 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T++S+IK    E    ++ +++++M   GC P+V   + ++ G  R+ NM    +++
Sbjct: 115 NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 174

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTL---- 136
           Q MV         YKP+   Y  LI GL K   +D++  +   M M+  G   N +    
Sbjct: 175 QHMVESG------YKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFST 228

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC+  +L +A  +   M++ G  P  +TYT L+ G C   KV  A  LF+ M +  
Sbjct: 229 LIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQAC 288

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD  +Y+ LI GYCK  +++EA  + REM                + P   T N  ID
Sbjct: 289 IPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGA-----------GLQPTIVTFNTLID 337

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CK G +    EL   +           +  LI G  +    + A E++ ++  K  + 
Sbjct: 338 GFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLL 397

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           D V+    +  L K G I +   +  +  ++G   + +TF  L  S ++
Sbjct: 398 DPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIK 446



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 147/314 (46%), Gaps = 30/314 (9%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMA--TFGCRPNVTTCDTLITG 68
           +   +   Y+P ++V+++ LI G    G + ++ +++ +MA    G  PNV T  TLI G
Sbjct: 174 YQHMVESGYKP-DNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHG 232

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L RTG +   L++   M+          KPN + Y +LI GLC+   V Q ++LF +M  
Sbjct: 233 LCRTGELEKALEVFGSMLEAG------CKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQ 286

Query: 129 K-----GINANTLL---CKKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
                  +  N+L+   CK+  + EA +L  E+    GL P I T+  L++G+C +GK+ 
Sbjct: 287 ACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLG 346

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
            A  L   M  KG   D  +Y +LI G  +   ++EA+ V ++M    F           
Sbjct: 347 RANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKF----------- 395

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
            + +  +C  F+ GLCK G++ +   +F     S      E F  L     K G  E A 
Sbjct: 396 -LLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQ 454

Query: 300 ELFNKLSCKNLVAD 313
           +L      +++ A 
Sbjct: 455 KLMEPAKARDITAQ 468



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 26/253 (10%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR-KGFMP 195
           L K   L +A  + E M      P + TY  L+N  C  G+   A+ LF SM R K   P
Sbjct: 20  LAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEP 79

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREM-----ILNGFK------------------KIF 232
           D ++Y+ LI+G C + N E A  +  EM       N F                   K+ 
Sbjct: 80  DRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVL 139

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            EM      P+ F  N  + G  ++ ++ +  E++  +  S  +     ++ LI G  K 
Sbjct: 140 EEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKI 199

Query: 293 GIFEIASELFNKLSCK--NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           G  + + ++ ++++ +    V +V+ ++ LIH L + G+++K   +  SM E GC  +  
Sbjct: 200 GKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKY 259

Query: 351 TFNTLMISFLQKE 363
           T+ TL+    + E
Sbjct: 260 TYTTLIAGLCRAE 272


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 181/407 (44%), Gaps = 55/407 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++L  ++A G     CY       FNSL+  +C   +   A +L+KKM    C+P     
Sbjct: 364 RILSMMIAEG-----CYPSYT--IFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVY 416

Query: 63  DTLITGLRRTGNM------NLTLKLHQEMVN------------------GMGDFGGIYK- 97
           + LI  +   G +       L  K + EM++                  G G F   YK 
Sbjct: 417 NILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKV 476

Query: 98  ----------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCK 139
                     P+   Y  +I  LC    V+    LF EMK  G+  +            K
Sbjct: 477 IHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSK 536

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
              + +A+  L+ M++ G  P + TYT L++ Y    KV+VA  LF+ M  KG  P+V +
Sbjct: 537 AGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVIT 596

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNG-FKKIFNEMKLCNVV---PETFTCNIFIDGLC 255
           Y+ LI+GYCK+ N+E+A  +   M  +     +    K+ N V   P   T    +DGLC
Sbjct: 597 YTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLC 656

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K   V +  +L  T+ +  CE    ++++LI G CK    + A E+F+K+  +    +V 
Sbjct: 657 KAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVY 716

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            Y+ LI  L K+ ++     +L  M EN CA ++  + T MI  L K
Sbjct: 717 TYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIY-TEMIDGLSK 762



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 155/356 (43%), Gaps = 34/356 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +LI  +     +  A++L + M   GC PNV T   LI G  ++GN+    +++  
Sbjct: 560 VTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYAR 619

Query: 85  MVNGMGDFGGI-----------YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
           M  G  D   +            KPNV  YG+L+DGLCK   V   +DL   M   G   
Sbjct: 620 M-RGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEP 678

Query: 134 NTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           NT++        CK  KL EA  +   M++RG NP ++TY+ L++      ++++ + + 
Sbjct: 679 NTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVL 738

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             M      P++  Y+ +I+G  K    +EA  +   M   G K            P   
Sbjct: 739 SKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCK------------PNVV 786

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T    IDG  K G V + +ELF  +    C      +  LI  CC  G  + A  L  ++
Sbjct: 787 TYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM 846

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
                   V +Y  +I    +E  +     LL  +E+NG A  +  +  L+ +F++
Sbjct: 847 KQTYWPKHVSSYCKVIEGYKREFILSLG--LLEEVEKNGSAPTILLYKVLIDNFVK 900



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 162/349 (46%), Gaps = 30/349 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+ G C    ++DA  L++ M   GC PN    D LI G  +   ++      
Sbjct: 644 NVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEA---- 699

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QE+ + M + G  Y PNV+ Y SLID L KD+ +D    +  +M +     N +      
Sbjct: 700 QEVFHKMVERG--YNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMI 757

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K  K  EA +L+ +M ++G  P + TYT +++G+   GKV+  + LF  M  KG  
Sbjct: 758 DGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCA 817

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+VLIN  C   +++EA  +  EM    + K  +    C V          I+G 
Sbjct: 818 PNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVS--SYCKV----------IEGY 865

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL--SCKNLVA 312
            K   +L  + L   +E +     + ++  LI    K G  E+A EL  ++  +  ++ A
Sbjct: 866 -KREFILS-LGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTA 923

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
               Y  LI++     +I     L   M  +G   D+ TF  L++  ++
Sbjct: 924 KKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIR 972



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 146/331 (44%), Gaps = 29/331 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  LI  F   G I+ A   + +M   GC P V T  TLI    +   +++  +L + M
Sbjct: 526 TYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELM 585

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           +   G F     PNV  Y +LIDG CK   +++   ++  M+      +  +  K K   
Sbjct: 586 I-AKGCF-----PNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIK--- 636

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
            N + E        P + TY  L++G C   KV  A  L ++M   G  P+   Y  LI+
Sbjct: 637 -NNVAE-------KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALID 688

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G+CK   ++EA  V  +M+  G+             P  +T +  ID L K+  +  V++
Sbjct: 689 GFCKAAKLDEAQEVFHKMVERGYN------------PNVYTYSSLIDRLFKDKRLDLVLK 736

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +   +  ++C   + I+  +I G  K    + A +L   +  K    +VV Y  +I   G
Sbjct: 737 VLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFG 796

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K G++ K   L   M   GCA +  T+  L+
Sbjct: 797 KAGKVDKCLELFREMGSKGCAPNFVTYTVLI 827



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 154/396 (38%), Gaps = 71/396 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG---------LRRTG 73
           N + +N +I G C      +A   + +M +  C PNV T   L+ G          +R  
Sbjct: 307 NTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRIL 366

Query: 74  NMNL------TLKLHQEMVNGM---GDFGGIY-----------KPNVFCYGSLIDGLCK- 112
           +M +      +  +   +V+      DF   Y           KP    Y  LI  +C  
Sbjct: 367 SMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSG 426

Query: 113 -----DRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLN 159
                    +  +  + EM   G   N +        LC   K  +A +++  MM  G  
Sbjct: 427 GELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFV 486

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P   TY+ ++   C   +V  A  LF  M   G +PDV++Y++LI+ + K   +++A N 
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNW 546

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             EM+ +G +            P   T    I    K   V    ELF  +    C   V
Sbjct: 547 LDEMVRDGCE------------PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNV 594

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKL-------------SCKNLVAD---VVAYNILIHA 323
             + +LI G CK G  E A +++ ++               KN VA+   VV Y  L+  
Sbjct: 595 ITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDG 654

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L K  ++K    LL +M  +GC  +   ++ L+  F
Sbjct: 655 LCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGF 690



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 146/424 (34%), Gaps = 98/424 (23%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            N LI+  C  G    A + + ++  FG +P   T + L+    R   ++    +H+EM 
Sbjct: 209 LNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMS 268

Query: 87  N---GMGDFG-----------GIYK------------PNVFCYGSLIDGLCKDRLVDQTK 120
                M +F            G ++            PN   Y  +I GLC+    ++  
Sbjct: 269 ELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAM 328

Query: 121 DLFMEMKDKGINANT-----LLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           D    M+      N      LLC    K +L    R+L +M+  G  P    +  L++ Y
Sbjct: 329 DFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAY 388

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC---------------KNFN----- 212
           C     + A  L   M +    P    Y++LI   C               K +N     
Sbjct: 389 CKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSA 448

Query: 213 ---------------------VEEAMNVSREMILNGFKK--------------------- 230
                                 E+A  V  EM+ NGF                       
Sbjct: 449 GTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENA 508

Query: 231 --IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
             +F EMK   VVP+ +T  I ID   K G + +       +    CE  V  + +LI  
Sbjct: 509 FFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHA 568

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K     +A+ELF  +  K    +V+ Y  LI    K G I+K   +   M  +    D
Sbjct: 569 YLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628

Query: 349 VDTF 352
           VD +
Sbjct: 629 VDMY 632



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 21/199 (10%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L+   C  G  NVA+     +   G+ P   +Y+ L+  + +   ++ A  V REM    
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREM---- 267

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE---IFNS 284
                +E+ L     + FT   F   LCK G   E + L         E FV    ++N 
Sbjct: 268 -----SELGLSM---DEFTLGFFAQALCKVGKWREALSLIEK------EDFVPNTILYNK 313

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +I G C+   FE A +  N++   + + +V  Y IL+     + Q+ +   +L  M   G
Sbjct: 314 MISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEG 373

Query: 345 CALDVDTFNTLMISFLQKE 363
           C      FN+L+ ++ + +
Sbjct: 374 CYPSYTIFNSLVHAYCKSD 392


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 164/357 (45%), Gaps = 30/357 (8%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +RR  +P   VTFN+LI G C   ++     L K+M+  G +P+V T   LI G  RTG 
Sbjct: 212 MRRSVQP-TVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGR 270

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           M   +K    M N M D G    PN   + +LID  CK+  V+   DL+ +M+ +G+  +
Sbjct: 271 MENAVK----MFNEMRDTG--VNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPD 324

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +        LC+   L  A  ++E M   GL P   TYT L++G C  GK+++A+ +  
Sbjct: 325 LVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQ 384

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            MA K    D  +Y+ LI+G  K     +A  V REM+    +            P+  T
Sbjct: 385 KMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALE------------PDNTT 432

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
             + ID  C+ G V    +L   ++    +  V  +N ++ G CK G  + A  L + + 
Sbjct: 433 YTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAML 492

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              +  D + YNIL+    K G++     L  S    G   D   + +L+    +K+
Sbjct: 493 NIGVSPDDITYNILLDGQCKHGKVANSEELESS---KGMVPDFAVYTSLISELAKKK 546



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 46/330 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN L++ F   G +  A ++  +M     +P V T +TLI+G+ R  +++    L++EM 
Sbjct: 189 FNVLMRDFVRLGELVSARKVFDEMRR-SVQPTVVTFNTLISGMCRARDLDAVDGLYKEM- 246

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
               D G   KP+V+ YG+LI G C+   ++    +F EM+D G+N N ++         
Sbjct: 247 ---SDVG--VKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVV--------- 292

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
                             +T L++ +C  G VN  + L+  M  +G MPD+ +Y+ L+NG
Sbjct: 293 ------------------FTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNG 334

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            C+  N++ A            + I  EMK   + P+  T    IDG CK+G +   M++
Sbjct: 335 LCRARNLKAA------------ESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDI 382

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +      L    + +LI G  K G    A  +  ++    L  D   Y ++I A  +
Sbjct: 383 KQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCR 442

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +G +K    LL  M+  G    V T+N +M
Sbjct: 443 KGDVKTGFKLLKEMQNKGKKPGVVTYNVIM 472


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 166/345 (48%), Gaps = 32/345 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N LI G+C +G + +A  L ++M T G  P V + +T++ G  + G M+   +   +M
Sbjct: 309 TYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDM 368

Query: 86  V--NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           +  N M        P++  Y +LI G C+   + +   L  E++ + ++ N +       
Sbjct: 369 LKKNLM--------PDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLID 420

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LC+   L  A +L E M+ RG++P + TYT L+NG C +G + +A   FD M   G  P
Sbjct: 421 GLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAP 480

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D F+Y+  I G  K  +  +A  +  EM+  GF             P+  T N+F++GLC
Sbjct: 481 DQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFP------------PDVITYNVFVNGLC 528

Query: 256 KNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           K G++ E  EL   + I +  +   + + S +    + G      E+F  +  +     V
Sbjct: 529 KLGNLEEAGELLQKM-IRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTV 587

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V Y +LIHA    G++       L M+E G   +V T+N L+  F
Sbjct: 588 VTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGF 632



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 167/344 (48%), Gaps = 26/344 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N+++  FC  G ++ A  LV KM   GC P+  T + LI GL + G +     L QEM
Sbjct: 239 TYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEM 298

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
                   G+ + + + Y  LI G CK  L+ +   L+ EM  +G++      NT++   
Sbjct: 299 AKA-----GL-RVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGF 352

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ K+ +A + L  M+++ L P I +Y  L+ G+C +G +  A  L D +  +    ++
Sbjct: 353 CKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNI 412

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LI+G C+  ++E A+ +  +MI  G            + P+  T  + ++G CK 
Sbjct: 413 VTYNTLIDGLCRLGDLETALKLKEDMINRG------------IHPDVVTYTVLVNGACKL 460

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G++L   E F  +           + + I G  K G    A +L  ++  K    DV+ Y
Sbjct: 461 GNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITY 520

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           N+ ++ L K G +++   LL  M  +G   D  T+ + M + ++
Sbjct: 521 NVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHME 564



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 163/358 (45%), Gaps = 27/358 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  +   + R   P    + N+++ GFC EG + DA Q +  M      P++ + +TLI
Sbjct: 326 ALALWEEMVTRGVSP-TVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLI 384

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  R GN+     L  E+      F      N+  Y +LIDGLC+   ++    L  +M
Sbjct: 385 YGFCRLGNIGEAFILLDELRFRNLSF------NIVTYNTLIDGLCRLGDLETALKLKEDM 438

Query: 127 KDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            ++GI+ + +         CK   ++ A    + M+  GL P  F YT  + G   +G  
Sbjct: 439 INRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDT 498

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A  L + M  KGF PDV +Y+V +NG CK  N+EEA  + ++MI +G           
Sbjct: 499 AKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGH---------- 548

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
             VP+  T   F+    +NGH+ E  E+F  +        V  +  LI      G  + A
Sbjct: 549 --VPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWA 606

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              F ++  K +V +V+ YN+LI+   K  ++ +     + M+E G   +  T+  L+
Sbjct: 607 MAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILI 664



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 150/331 (45%), Gaps = 32/331 (9%)

Query: 40  IRDASQLVKK------MATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFG 93
           +RD + LVK       M  +G RP VTT +T++    + G +   L L  +M        
Sbjct: 212 LRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQER----- 266

Query: 94  GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLC---KKTKLVE 145
           G Y P+   +  LI+GL K   + Q K L  EM   G+       N L+C   KK  LVE
Sbjct: 267 GCY-PSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVE 325

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  L E M+ RG++P + ++  ++ G+C  GK++ A      M +K  MPD+ SY+ LI 
Sbjct: 326 ALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIY 385

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G+C+  N+ EA              + +E++  N+     T N  IDGLC+ G +   ++
Sbjct: 386 GFCRLGNIGEAF------------ILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALK 433

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L   +        V  +  L+ G CK G   +A E F+++    L  D  AY   I    
Sbjct: 434 LKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGEL 493

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K G   K   L   M   G   DV T+N  +
Sbjct: 494 KLGDTAKAFKLQEEMLTKGFPPDVITYNVFV 524



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 153/313 (48%), Gaps = 26/313 (8%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           P+V  C+ ++  LR   + NL +K   E+   MG++G   +P V  Y +++   CK   V
Sbjct: 200 PDVKNCNRILKILR---DKNLLVKA-LEVYRMMGEYG--IRPTVTTYNTMLHSFCKGGEV 253

Query: 117 DQTKDLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            +  DL  +M+++G     +  N L   L KK +L +A  L++ M + GL    +TY PL
Sbjct: 254 QRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPL 313

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           + GYC  G +  A+AL++ M  +G  P V S++ ++ G+CK    E  M+ +R+ + +  
Sbjct: 314 ICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCK----EGKMSDARQQLSDML 369

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           KK        N++P+  + N  I G C+ G++ E   L   L   N    +  +N+LI G
Sbjct: 370 KK--------NLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDG 421

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C+ G  E A +L   +  + +  DVV Y +L++   K G +         M   G A D
Sbjct: 422 LCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPD 481

Query: 349 VDTFNTLMISFLQ 361
              +   ++  L+
Sbjct: 482 QFAYTARIVGELK 494



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 128/285 (44%), Gaps = 49/285 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+LI G C  G++  A +L + M   G  P+V T   L+ G  + GNM +  +  
Sbjct: 411 NIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFF 470

Query: 83  QEMVN------------------GMGDFGGIYK-----------PNVFCYGSLIDGLCKD 113
            EM++                   +GD    +K           P+V  Y   ++GLCK 
Sbjct: 471 DEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKL 530

Query: 114 RLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTY 165
             +++  +L  +M   G   + +          +   L E   +   M+ RG  P + TY
Sbjct: 531 GNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTY 590

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L++ + L G+++ A+A F  M  KG +P+V +Y+VLING+CK   +++A         
Sbjct: 591 TVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQAC-------- 642

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
               K F EM+   + P  +T  I I+  C  G   E + L+  +
Sbjct: 643 ----KFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQM 683



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 15/219 (6%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + +T+N  + G C  GN+ +A +L++KM   G  P+  T  + +      G+    L+
Sbjct: 514 PPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGH----LR 569

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
             +E+   M   G    P V  Y  LI     +  +D     F+EM++KG+  N +    
Sbjct: 570 EGREIFYDMLSRGQT--PTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNV 627

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                CK  K+ +A +    M ++G+ P  +TYT L+N  C +GK   A+ L+  M  K 
Sbjct: 628 LINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKR 687

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
             PD  ++  L+    K++ V +A+     +IL+G + I
Sbjct: 688 IRPDSCTHGALLKKLDKDYKV-QAVQFIESLILDGDRTI 725



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 12/176 (6%)

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           +F+ M R  F+PDV           KN N    +   + +++   + ++  M    + P 
Sbjct: 189 VFEKMMRNRFLPDV-----------KNCNRILKILRDKNLLVKALE-VYRMMGEYGIRPT 236

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T N  +   CK G V   ++L P ++   C      FN LI G  K G  + A  L  
Sbjct: 237 VTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQ 296

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +++   L      YN LI    K+G + +   L   M   G +  V + NT+M  F
Sbjct: 297 EMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGF 352



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 64/132 (48%)

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F +M     +P+   CN  +  L     +++ +E++  +        V  +N+++   C
Sbjct: 189 VFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFC 248

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  + A +L  K+  +      V +N+LI+ L K+G++++   L+  M + G  +   
Sbjct: 249 KGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPY 308

Query: 351 TFNTLMISFLQK 362
           T+N L+  + +K
Sbjct: 309 TYNPLICGYCKK 320


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 177/368 (48%), Gaps = 37/368 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ SLI G+C   ++  A ++   M   GCR N  +  T+I GL   G ++  + L ++M
Sbjct: 251 TYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKM 310

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LL 137
                     Y P V  Y  +I  L  +    +  DLF EM+++    N          +
Sbjct: 311 RED-----DCY-PTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAM 364

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ KL E+ R+L  MM++GL P + TY  L+ GYC  G++  A+ +   M      P+ 
Sbjct: 365 CKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNE 424

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMI-----------------------LNGFKKIFNE 234
            +Y+ LI G+ K  +V +AM +  +M+                        +   K+ + 
Sbjct: 425 RTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDL 484

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           +K   +VP+ +T ++FID LCK+  + E  +LF +L+    +    ++ +LI G CK G 
Sbjct: 485 LKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGK 544

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A  L  ++  ++ + +   YN LI+ + KEG++++   ++ +M + G    V T+  
Sbjct: 545 IDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTI 604

Query: 355 LMISFLQK 362
           L+   L++
Sbjct: 605 LIEEMLRE 612



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 169/410 (41%), Gaps = 81/410 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V++ ++I G C  G I +   L KKM    C P V T   +I  L   GN        
Sbjct: 283 NEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL--FGN-------- 332

Query: 83  QEMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI------- 131
              + GM  F  + +    PNV  Y  ++D +CK+R +D+++ +  EM +KG+       
Sbjct: 333 DRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTY 392

Query: 132 NA---------------------------------NTLLC---KKTKLVEANRLLELMMQ 155
           NA                                 N L+C   K+  + +A  LL  M++
Sbjct: 393 NALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLE 452

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
             L P + TY  L++  C  G  + A  L D +   G +PD ++YSV I+  CK+  +EE
Sbjct: 453 SKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEE 512

Query: 216 AMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFTCNIFID 252
           A ++   +   G K                        +   M   + +P + T N  I 
Sbjct: 513 ACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIY 572

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G+CK G V E + +   +     +  V  +  LI    + G F+ A+ +FN++       
Sbjct: 573 GVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKP 632

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           DV  Y   IH     G +K+   ++  M E G   D  T+ TL+IS  ++
Sbjct: 633 DVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTY-TLLISAYER 681



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 136/276 (49%), Gaps = 20/276 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLLCKKTKL---VEAN 147
           +K +V  Y  L+  L +  ++D+ K ++ EM +  I       NT++   +K+   VEAN
Sbjct: 175 FKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEAN 234

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
             +  + Q GL+P  FTYT L+ GYC    VN A  +F+ M  KG   +  SY+ +I+G 
Sbjct: 235 LYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGL 294

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C+   ++E ++            +F +M+  +  P   T  + I  L  N   LE M+LF
Sbjct: 295 CEAGRIDEGIS------------LFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLF 342

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +   +CE  V  +  ++   CK    + +  + N++  K LV  VV YN LI    +E
Sbjct: 343 NEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEE 402

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           G+I+    +L  ME N C  +  T+N L+  F +++
Sbjct: 403 GRIEAALEILGLMESNNCRPNERTYNELICGFSKRK 438



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 155/358 (43%), Gaps = 33/358 (9%)

Query: 14  FIRRCYRPLNDVTF-------NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           F+R+  R  ND+ F       N L+        I +  ++  +M      PN+ T +T++
Sbjct: 162 FLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMV 221

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
               + GN+ +   L+   +     F     P+ F Y SLI G C++  V+    +F  M
Sbjct: 222 NAYSKMGNI-VEANLYVSKI-----FQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMM 275

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            +KG   N +        LC+  ++ E   L + M +    P + TYT +++      + 
Sbjct: 276 PNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRN 335

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
              + LF+ M  +   P+V +Y+V+++  CK   ++E+            ++I NEM   
Sbjct: 336 LEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDES------------RRILNEMMEK 383

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            +VP   T N  I G C+ G +   +E+   +E +NC      +N LI G  K      A
Sbjct: 384 GLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKA 443

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             L +K+    L   +V YN LIH   K G       LL  ++ENG   D  T++  +
Sbjct: 444 MTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFI 501



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 140/334 (41%), Gaps = 84/334 (25%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI+G+C EG I  A +++  M +  CRPN  T + LI G  +  +++  + L  +
Sbjct: 390 VTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSK 449

Query: 85  MVNG------------------MGDFGGIYK-----------PNVFCYGSLIDGLCKDRL 115
           M+                     G F   YK           P+ + Y   ID LCK + 
Sbjct: 450 MLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKR 509

Query: 116 VDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           +++  DLF  +K+KGI AN ++        CK  K+ EA  LLE M      P   TY  
Sbjct: 510 MEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNS 569

Query: 168 LLNGYCLVGKVNVAIALFDSMARKG----------------------------------- 192
           L+ G C  GKV   +++ ++M++ G                                   
Sbjct: 570 LIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFG 629

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PDV++Y+  I+ YC + NV+EA  +   MI  G            V+P++ T  + I 
Sbjct: 630 HKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAG------------VMPDSLTYTLLIS 677

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
              + G   +   +   +  + C+    I+N+LI
Sbjct: 678 AYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 33/205 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+V + +LI G C  G I +A  L+++M +  C PN +T ++LI G+ + G +   L   
Sbjct: 528 NEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGL--- 584

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             MV  M   G   KP V  Y  LI+ + ++   D                         
Sbjct: 585 -SMVENMSKMG--VKPTVATYTILIEEMLREGDFDH------------------------ 617

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
              ANR+   M+  G  P ++TYT  ++ YC  G V  A  +   M   G MPD  +Y++
Sbjct: 618 ---ANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTL 674

Query: 203 LINGYCKNFNVEEAMNVSREMILNG 227
           LI+ Y +     +A NV + M+  G
Sbjct: 675 LISAYERLGLAYDAFNVLKRMLDAG 699


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 175/382 (45%), Gaps = 42/382 (10%)

Query: 10  AFGSFIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A G F    +R L  + VT+NS+I GF   G + D     ++M    C P+V T + LI 
Sbjct: 281 ARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 340

Query: 68  GLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
              + G + + L+ ++EM  NG+       KPNV  Y +L+D  CK+ ++ Q    +++M
Sbjct: 341 CFCKFGKLPIGLEFYREMKGNGL-------KPNVVSYSTLVDAFCKEGMMQQAIKFYVDM 393

Query: 127 KDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           +  G+  N           CK   L +A RL   M+Q G+   + TYT L++G C   ++
Sbjct: 394 RRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERM 453

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------- 230
             A  LF  M   G +P++ SY+ LI+G+ K  N++ A+ +  E+   G K         
Sbjct: 454 KEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 513

Query: 231 ---------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                          + NEMK C +   +      +D   K+G+  E + L   ++  + 
Sbjct: 514 IWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDI 573

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-NLVADVVAYNILIHALGKEGQIKKEN 334
           E+ V  F  LI G CK  +   A + FN++S    L A+   +  +I  L K+ Q++   
Sbjct: 574 EVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAAT 633

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L   M + G   D   + +LM
Sbjct: 634 TLFEQMVQKGLVPDRTAYTSLM 655



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 154/342 (45%), Gaps = 26/342 (7%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N L+  F   G   D  +  K M   G RP V T + +I  + + G++     L +EM  
Sbjct: 231 NGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEM-- 288

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLL---CK 139
               F G+  P+   Y S+IDG  K   +D T   F EMKD       I  N L+   CK
Sbjct: 289 ---KFRGLV-PDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCK 344

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             KL         M   GL P + +Y+ L++ +C  G +  AI  +  M R G +P+ ++
Sbjct: 345 FGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYT 404

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+ LI+  CK  N+ +A  +  EM+  G +         NVV    T    IDGLC    
Sbjct: 405 YTSLIDANCKIGNLSDAFRLGNEMLQVGVE--------WNVV----TYTALIDGLCDAER 452

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + E  ELF  ++ +     +  +N+LI G  K    + A EL N+L  + +  D++ Y  
Sbjct: 453 MKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGT 512

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            I  L    +I+    ++  M+E G   +   + TLM ++ +
Sbjct: 513 FIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFK 554



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 145/353 (41%), Gaps = 56/353 (15%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F++L       G + +A Q   KM  F   P   +C+ L+    + G  +   +  ++M+
Sbjct: 195 FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
                 G   +P VF Y  +ID +CK+  V+  + LF EMK                   
Sbjct: 255 ------GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMK------------------- 289

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
                    RGL P   TY  +++G+  VG+++  +  F+ M      PDV +Y+ LIN 
Sbjct: 290 --------FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINC 341

Query: 207 YCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPE 243
           +CK   +   +   REM  NG K                       K + +M+   +VP 
Sbjct: 342 FCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPN 401

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
            +T    ID  CK G++ +   L   +     E  V  + +LI G C     + A ELF 
Sbjct: 402 EYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFG 461

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K+    ++ ++ +YN LIH   K   + +   LL  ++  G   D+  + T +
Sbjct: 462 KMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 514



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 146/342 (42%), Gaps = 48/342 (14%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N VT+ +LI G C    +++A +L  KM T G  PN+ + + LI G  +  NM+  L+L
Sbjct: 435 WNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL 494

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
             E+  G G      KP++  YG+ I GLC    ++  K +  EMK+ GI AN+L+    
Sbjct: 495 LNEL-KGRG-----IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI---- 544

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                                  YT L++ Y   G     + L D M        V ++ 
Sbjct: 545 -----------------------YTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFC 581

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           VLI+G CKN  V +A++         F +I N+  L       FT    IDGLCK+  V 
Sbjct: 582 VLIDGLCKNKLVSKAVDY--------FNRISNDFGL-QANAAIFTA--MIDGLCKDNQVE 630

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
               LF  +           + SL+ G  K G    A  L +K++   +  D++AY  L+
Sbjct: 631 AATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLV 690

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             L    Q++K    L  M   G   D      L IS L+K 
Sbjct: 691 WGLSHCNQLQKARSFLEEMIGEGIHPD----EVLCISVLKKH 728



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 60/128 (46%)

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F++MK   V P+T +CN  +    K G   +V   F  +  +     V  +N +I   CK
Sbjct: 215 FSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCK 274

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A  LF ++  + LV D V YN +I   GK G++         M++  C  DV T
Sbjct: 275 EGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVIT 334

Query: 352 FNTLMISF 359
           +N L+  F
Sbjct: 335 YNALINCF 342



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 14/202 (6%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           ++ C    N + + +L+  +   GN  +   L+ +M        V T   LI GL +   
Sbjct: 533 MKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKL 592

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--- 131
           ++  +     + N   DFG   + N   + ++IDGLCKD  V+    LF +M  KG+   
Sbjct: 593 VSKAVDYFNRISN---DFG--LQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 647

Query: 132 -NANTLLC----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
             A T L     K+  ++EA  L + M + G+   +  YT L+ G     ++  A +  +
Sbjct: 648 RTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLE 707

Query: 187 SMARKGFMPD-VFSYSVLINGY 207
            M  +G  PD V   SVL   Y
Sbjct: 708 EMIGEGIHPDEVLCISVLKKHY 729


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 172/367 (46%), Gaps = 35/367 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL +F   + R  +P   + FN L+              L K+M   G + NV T   LI
Sbjct: 24  ALASFNRMLDRNPQP-PIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILI 82

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVFCYGSLIDGLCKDRLVDQTKDL 122
                    N    LH  +  G   FG      +KP+V  + +LIDG+C+    +    L
Sbjct: 83  ---------NCFCFLHH-VDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGL 132

Query: 123 FMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM   G     +  N+L+   C + K+ +  ++  LM+ +GL P +++Y+  +NGYC 
Sbjct: 133 LKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCK 192

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
           V K++ A+ LFD M+ +G +P+  +Y+ LI   C+     +A            + +F +
Sbjct: 193 VEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDA------------QVLFRK 240

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M  C + P+    +  +DG CK G++ E++ LF  ++    +  + ++  +I G C+   
Sbjct: 241 MCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRK 300

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A E+ ++L  + L  DV  Y  L+  L +EG I +   L   MEE+GC     ++N 
Sbjct: 301 VKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNV 360

Query: 355 LMISFLQ 361
           L+   LQ
Sbjct: 361 LLQGCLQ 367



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 14/211 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +++  I G+C    I +A +L  +M+  G  PN  T +TLI  L +     L  +  Q +
Sbjct: 182 SYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQA----LRPRDAQVL 237

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
              M   G    P++  Y +L+DG CK   +D+   LF EM+ + +  + +        +
Sbjct: 238 FRKMCACG--LSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGM 295

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+  K+ +A  +L  ++  GL P + TYT L++G C  G +  A+ LF  M   G MP  
Sbjct: 296 CRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGS 355

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
            SY+VL+ G  ++ +    + +  EM   GF
Sbjct: 356 CSYNVLLQGCLQHNDTSTVVQLIHEMADRGF 386



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 126/264 (47%), Gaps = 22/264 (8%)

Query: 103 YGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ---RGL 158
           +G+L D L   +R++D+        +   I  N LL    ++ +   ++ L  +   RG+
Sbjct: 18  FGNLDDALASFNRMLDRNP------QPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGI 71

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
              + T + L+N +C +  V+   ++F    ++GF PDV  ++ LI+G C+    E A  
Sbjct: 72  KYNVCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAG 131

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           + +EM L G             VP+  TCN  + G C  G + +V ++F  +     +  
Sbjct: 132 LLKEMGLVG------------CVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPD 179

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           V  ++  I G CK    + A ELF+++S + +V + V YN LI AL +  + +    L  
Sbjct: 180 VYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFR 239

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            M   G + D+  ++TL+  F ++
Sbjct: 240 KMCACGLSPDILAYSTLLDGFCKQ 263



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 12/188 (6%)

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G ++ A+A F+ M  +   P +  ++ L++   +    E  +++ +EM   G K      
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIK-----Y 73

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
            +C       T +I I+  C   HV     +F        +  V IF +LI G C+ G  
Sbjct: 74  NVC-------TLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKT 126

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           E+A+ L  ++     V DVV  N L+     +G+I K   +   M   G   DV +++  
Sbjct: 127 ELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIF 186

Query: 356 MISFLQKE 363
           +  + + E
Sbjct: 187 INGYCKVE 194


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 167/340 (49%), Gaps = 30/340 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V FN LI   C +G++  A++LV  M   GC PN  T + L+ GL   G +   + L 
Sbjct: 239 NLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLL 298

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLC-KDRLVDQTKDLFMEMKDKGINANTL----- 136
            +MV+          PN   +G+LI+G   + R  D T+ + + ++ +G   N       
Sbjct: 299 NQMVSNKC------VPNDVTFGTLINGFVMQGRASDGTR-VLVSLEARGHRGNEYVYSSL 351

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+ K  +A  L + M+ +G  P    Y+ L++G C  GK++ A      M  KG+
Sbjct: 352 ISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGY 411

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P+ F+YS L+ GY +  +  +A+ V +EM  N            N +      +I I+G
Sbjct: 412 LPNSFTYSSLMRGYFEAGDSHKAILVWKEMANN------------NCIHNEVCYSILING 459

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV-- 311
           LCK+G  +E + ++  +     +L V  ++S+I G C   + E   +LFN++ C+  V  
Sbjct: 460 LCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQ 519

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            DV+ YNIL++A   +  I +   +L  M + GC  D  T
Sbjct: 520 PDVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFIT 559



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 157/345 (45%), Gaps = 26/345 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +TFN +IK  C  G +  A ++ +++    C P+  T  TL+ GL +   ++  + L 
Sbjct: 169 NALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLL 228

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM    G F     PN+  +  LI  LCK   + +   L   M  KG   N +      
Sbjct: 229 DEM-QVEGTF-----PNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALV 282

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC K KL +A  LL  M+     P   T+  L+NG+ + G+ +    +  S+  +G  
Sbjct: 283 HGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHR 342

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            + + YS LI+G CK     +AM + +EM+  G          C   P T   +  IDGL
Sbjct: 343 GNEYVYSSLISGLCKEGKFNQAMELWKEMVGKG----------CG--PNTIVYSALIDGL 390

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + E       ++          ++SL+RG  + G    A  ++ +++  N + + 
Sbjct: 391 CREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNE 450

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V Y+ILI+ L K+G+  +   +   M   G  LDV  +++++  F
Sbjct: 451 VCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGF 495



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 159/356 (44%), Gaps = 24/356 (6%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKM-ATFGCRPNVTTCDTLITGLRRTG 73
           ++R  R   +  F  + K +        A  L  +M   F C+  V + ++++  + + G
Sbjct: 87  MKRERRVFLEKNFIVMFKAYGKAHLPEKAVDLFHRMWGEFQCKQTVKSFNSVLNVIVQEG 146

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
             N  L+ +  +V        I+ PN   +  +I  +C+  LVD+  ++F E+  +    
Sbjct: 147 LFNRALEFYNHVVASKSL--NIH-PNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAP 203

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +          LCK+ ++ EA  LL+ M   G  P +  +  L++  C  G +  A  L 
Sbjct: 204 DNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLV 263

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           D+M  KG +P+  +Y+ L++G C    +E+A+++  +M+ N              VP   
Sbjct: 264 DNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSN------------KCVPNDV 311

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T    I+G    G   +   +  +LE         +++SLI G CK G F  A EL+ ++
Sbjct: 312 TFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEM 371

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             K    + + Y+ LI  L +EG++ +    L  M+  G   +  T+++LM  + +
Sbjct: 372 VGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFE 427



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 126/328 (38%), Gaps = 97/328 (29%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           NDVTF +LI GF M+G   D ++++  +   G R N     +LI+GL + G  N  ++L 
Sbjct: 309 NDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELW 368

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           +EMV  G G       PN   Y +LIDGLC++  +D+ +    EMK+KG   N+      
Sbjct: 369 KEMVGKGCG-------PNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSL 421

Query: 137 --------------------------------------LCKKTKLVEANRLLELMMQRGL 158
                                                 LCK  K +EA  + + M+ RG+
Sbjct: 422 MRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGI 481

Query: 159 -------------------------------------NPVIFTYTPLLNGYCLVGKVNVA 181
                                                 P + TY  LLN +C+   +  A
Sbjct: 482 KLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRA 541

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFN-VEEAMNVSREMILN--------GFKKIF 232
           I + + M  +G  PD  +  + +    +N N  ++      E+++         G  KI 
Sbjct: 542 IDILNIMLDQGCDPDFITCDIFLKTLRENMNPPQDGREFLDELVVRLVKRQRTIGASKII 601

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHV 260
             M    ++P+  T  + +  +CK  +V
Sbjct: 602 EVMMHKFLLPKASTWAMVVQQVCKPKNV 629



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 15/202 (7%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSM-ARKGF--MPDVFSYSVLINGYCKNFNVEEAMNVS 220
           ++  +LN     G  N A+  ++ + A K     P+  +++++I   C+   V++A+ V 
Sbjct: 134 SFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEV- 192

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                      F E+ L N  P+ +T +  + GLCK   + E + L   +++      + 
Sbjct: 193 -----------FREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLV 241

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            FN LI   CK G    A++L + +  K  V + V YN L+H L  +G+++K   LL  M
Sbjct: 242 AFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQM 301

Query: 341 EENGCALDVDTFNTLMISFLQK 362
             N C  +  TF TL+  F+ +
Sbjct: 302 VSNKCVPNDVTFGTLINGFVMQ 323


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 158/335 (47%), Gaps = 45/335 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+  F  EG IR A  +   +  +G RP+V + +TL+ G  + G++N
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L   M        G+ +P+V+ Y  LI+GLCK+                       
Sbjct: 189 EGFRLKNAM-----QASGV-QPDVYTYSVLINGLCKE----------------------- 219

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
               +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+ ++  M  +   PD
Sbjct: 220 ----SKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CK  ++++A ++  EMI+ G K            P+ FT    IDG CK
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK------------PDKFTYTTLIDGNCK 323

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           Y ++I+   K+G +   + LL  M+ +G    V T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L    ++E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEE-- 126

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKT 141
               +    Y  +++ +  L+    K+  +   + +F  +   G+       NTL+    
Sbjct: 127 ----NLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 142 KLVEAN---RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           KL + N   RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D VAY 
Sbjct: 291 DLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   ++ T+  ++  F +K
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 13/218 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + + + GL P + ++  L+NGY  +G +N    L ++M   G  PDV++YSVLIN
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G CK   +++A NV           +F+EM    +VP   T    IDG CKNG V   ME
Sbjct: 215 GLCKESKMDDA-NV-----------LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           ++  +   +    +  +N+LI G CK G  + A +L +++  K L  D   Y  LI    
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNC 322

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           KEG ++        M +    LD D   T +IS L +E
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLD-DVAYTALISGLCQE 359



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 17/207 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  A + F   + +   P N VTF +LI G C  G +  A ++ K+M +    P++ T
Sbjct: 220 SKMDDANVLFDEMLDKGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLIT 278

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
            +TLI GL + G++     L  EM+  G+       KP+ F Y +LIDG CK+  ++   
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMIMKGL-------KPDKFTYTTLIDGNCKEGDLETAF 331

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +    M  + I  + +        LC++ + V+A ++L  M+  GL P I TYT ++N +
Sbjct: 332 EYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEF 391

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFS 199
           C  G V     L   M R G+ P V +
Sbjct: 392 CKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 182/394 (46%), Gaps = 69/394 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +N++I   C EG   +A +LV+KM   G  P++ T +  I  L ++G +    ++ 
Sbjct: 222 NRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIF 281

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M   + +  G+ KPN   Y  +++G C + + ++ + +F  MK    N+ TL      
Sbjct: 282 RDMQ--IDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMK----NSETLSLRSYN 335

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                L +  KL+EA+ +L  M ++ + P +++Y  L++G C  G  + A ++   M   
Sbjct: 336 IWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRES 395

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF------ 245
           G  PD  +YS L++GYC+   + EA  V REMI  G    F  M  CN++  +       
Sbjct: 396 GVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVG---CFPNMYTCNILLHSLWKEGRA 452

Query: 246 --------------------TCNIFIDGLCKNGHVLEVMELFPTLEISNCE-------LF 278
                               TCN  I+GLCK G++ + +E+   +              F
Sbjct: 453 SEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSF 512

Query: 279 VEIFN----------------SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
           +++F+                ++I G CK G  + A +   ++  K L  D + ++  I+
Sbjct: 513 IDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIY 572

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              K+G++     +L  ME+ GC   + T+N+L+
Sbjct: 573 NYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLI 606



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 160/343 (46%), Gaps = 31/343 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI   C  G + +A ++  KM+  GC+PN  +   L+ G  R G  +  + L  EM
Sbjct: 155 TFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEM 214

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            +     G +  PN   Y ++I  LC +    + + L  +M++ G++ + +        L
Sbjct: 215 RSS----GAL--PNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAAL 268

Query: 138 CKKTKLVEANRLLELMM---QRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           CK  +++EA+R+   M    + GL  P   TY  +L G+C  G    A A+FDSM     
Sbjct: 269 CKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSET 328

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +  + SY++ + G  ++  + EA              I NEM   N+ P  ++ NI + G
Sbjct: 329 L-SLRSYNIWMLGLVRSGKLLEA------------HLILNEMAEKNIKPNLYSYNILVHG 375

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G   +   +   +  S        +++L+ G C+ G    A+ +  ++       +
Sbjct: 376 LCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPN 435

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +   NIL+H+L KEG+  +   LL  M E G  LD  T NT++
Sbjct: 436 MYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMI 478



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 169/357 (47%), Gaps = 34/357 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +++GFC EG   +A  +   M       ++ + +  + GL R+G +   L+ H
Sbjct: 296 NTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETL-SLRSYNIWMLGLVRSGKL---LEAH 351

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             ++N M +     KPN++ Y  L+ GLCK  +    + +   M++ G+  +T+      
Sbjct: 352 L-ILNEMAEKN--IKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLL 408

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C++ K++EAN +L  M+Q G  P ++T   LL+     G+ + A  L   M  +G+ 
Sbjct: 409 HGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYG 468

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------------IFNEMKLCNVV 241
            D  + + +ING CK  N+++A+ +   M   G                I N  K C  +
Sbjct: 469 LDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKC--L 526

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIAS 299
           P++ T    I GLCK G V E  +    LE+   +L  +  IF++ I   CK G    A 
Sbjct: 527 PDSITYATIIGGLCKVGRVDEAKKKL--LEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAF 584

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +  ++  K     +  YN LI  LG E QI +   L+  M+E G   +V T+N ++
Sbjct: 585 RVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNII 641



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 166/393 (42%), Gaps = 79/393 (20%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+++L+ G+C  G I +A+ ++++M   GC PN+ TC+ L+  L + G  +    L 
Sbjct: 400 DTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLL 459

Query: 83  Q---------------EMVNGMGDFGGIYK------------------------------ 97
           Q                M+NG+   G + K                              
Sbjct: 460 QMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIR 519

Query: 98  -------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTK 142
                  P+   Y ++I GLCK   VD+ K   +EM  K ++ ++L+        CK+ K
Sbjct: 520 NNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGK 579

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L  A R+L+ M ++G N  + TY  L+ G     ++     L D M  +G  P+V++Y+ 
Sbjct: 580 LSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNN 639

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL---CKNGH 259
           +I+   +   +++A  +  EM+  G            + P  +T  I I      C  G 
Sbjct: 640 IISCLSEGGKLKDATCLLDEMLQKG------------ISPNIYTFRILIGAFFKACDFGA 687

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
             E+ E+  +L      L+  +FN L+ G    G    A ELF     ++L      Y  
Sbjct: 688 AQELFEIALSLCGHKESLYSFMFNELLAG----GETLKAKELFEAALDRSLALKNFLYRD 743

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           LI  L K+G++   +++L  M +   + D  +F
Sbjct: 744 LIEKLCKDGKLDDASFILHKMMDKQYSFDPASF 776



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 126/274 (45%), Gaps = 17/274 (6%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           KP  + +  LI  LC+   ++  +++F +M +KG   N           C+         
Sbjct: 150 KPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGID 209

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           LL+ M   G  P    Y  +++  C  G+   A  L + M   G  PD+ +++  I   C
Sbjct: 210 LLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALC 269

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K+  + EA  + R+M      +I  EM L    P T T N+ ++G C  G   E   +F 
Sbjct: 270 KSGQILEASRIFRDM------QIDEEMGLPK--PNTVTYNLMLEGFCSEGMFEEARAIFD 321

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
           +++ S   L +  +N  + G  + G    A  + N+++ KN+  ++ +YNIL+H L K G
Sbjct: 322 SMKNSET-LSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYG 380

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
                  +L  M E+G A D  T++TL+  + ++
Sbjct: 381 MFSDARSILGLMRESGVAPDTVTYSTLLHGYCRR 414



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 48/260 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + + F++ I  +C +G +  A +++K+M   GC  ++ T ++LI GL     +     L 
Sbjct: 563 DSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLM 622

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
            EM        GI+ PNV+ Y ++I  L +   +     L  EM  KGI+ N        
Sbjct: 623 DEMKER-----GIF-PNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILI 676

Query: 135 --------------------TLLCKKTKL--------------VEANRLLELMMQRGLNP 160
                               +L   K  L              ++A  L E  + R L  
Sbjct: 677 GAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLAGGETLKAKELFEAALDRSLAL 736

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
             F Y  L+   C  GK++ A  +   M  K +  D  S+  +I+   K  +   A   +
Sbjct: 737 KNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVIDELGKRGSKHAADEFA 796

Query: 221 REMILNGFKKIFNEMKLCNV 240
             M+    +  FNE +  N+
Sbjct: 797 ERMMEMASETDFNEHENKNI 816


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 158/334 (47%), Gaps = 45/334 (13%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C  P +   FN L+  F  EG IR A  +   +  +G RP+V + +TL+ G  + G++N 
Sbjct: 130 CGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137
             +L   M        G+ +P+V+ Y  LI+GLCK+                        
Sbjct: 190 GFRLKNAM-----QASGV-QPDVYTYSVLINGLCKE------------------------ 219

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
              +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+ ++  M  +   PD+
Sbjct: 220 ---SKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 276

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LI G CK  ++++A ++  EMI+ G K            P+ FT    IDG CK 
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK------------PDKFTYTTLIDGNCKE 324

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G +    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  Y
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            ++I+   K+G +   + LL  M+ +G    V T
Sbjct: 385 TMIINEFCKKGDVWXGSKLLKEMQRDGYKPSVVT 418



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L    ++E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEE-- 126

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKT 141
               +    Y  +++ +  L+    K+  +   + +F  +   G+       NTL+    
Sbjct: 127 ----NLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 142 KLVEAN---RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           KL + N   RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D VAY 
Sbjct: 291 DLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   ++ T+  ++  F +K
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 13/218 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + + + GL P + ++  L+NGY  +G +N    L ++M   G  PDV++YSVLIN
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G CK   +++A NV           +F+EM    +VP   T    IDG CKNG V   ME
Sbjct: 215 GLCKESKMDDA-NV-----------LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           ++  +   +    +  +N+LI G CK G  + A +L +++  K L  D   Y  LI    
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNC 322

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           KEG ++        M +    LD D   T +IS L +E
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLD-DVAYTALISGLCQE 359



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 17/207 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  A + F   + +   P N VTF +LI G C  G +  A ++ K+M +    P++ T
Sbjct: 220 SKMDDANVLFDEMLDKGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLIT 278

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
            +TLI GL + G++     L  EM+  G+       KP+ F Y +LIDG CK+  ++   
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMIMKGL-------KPDKFTYTTLIDGNCKEGDLETAF 331

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +    M  + I  + +        LC++ + V+A ++L  M+  GL P I TYT ++N +
Sbjct: 332 EYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEF 391

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFS 199
           C  G V     L   M R G+ P V +
Sbjct: 392 CKKGDVWXGSKLLKEMQRDGYKPSVVT 418


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 165/369 (44%), Gaps = 29/369 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V  AL  F   + R   P + VT++ L+   C     R A  L+ +M   GC P++ T 
Sbjct: 177 RVPDALAVFDDMLHRGCSP-SVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTY 235

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI-YKPNVFCYGSLIDGLCKDRLVDQTKD 121
           + LI  +   G+++       E +N + D      KP+   Y  ++  LC      + ++
Sbjct: 236 NVLINAMCNEGDVD-------EALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEE 288

Query: 122 LFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF EM       +        T LC++  +  A ++++ M + G  P I TY+ +L+G C
Sbjct: 289 LFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLC 348

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
            VG+V+ A+ L   +   G  PD  +Y+ ++ G C     E A            +++  
Sbjct: 349 DVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHA------------EELMA 396

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM   +  P+  T N  I  LC+ G V   +++   +  + C   +  +NS+I G C   
Sbjct: 397 EMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNER 456

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A EL + L       D+V +N L+  L    + +    L+++M  + C  D  TFN
Sbjct: 457 CIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFN 516

Query: 354 TLMISFLQK 362
           T++ S  QK
Sbjct: 517 TVITSLCQK 525



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 162/367 (44%), Gaps = 43/367 (11%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL  V  N LIK  C  G + DA ++    AT G    V T +T++ G  R G +    +
Sbjct: 95  PLPVVPCNILIKRLCSGGRVADAERV---FATLGASATVVTYNTMVNGYCRAGRIEDARR 151

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--- 137
           L    ++GM      + P+ F +  LI  LC    V     +F +M  +G + + +    
Sbjct: 152 L----ISGMP-----FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSI 202

Query: 138 -----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                CK +   +A  LL+ M  +G  P I TY  L+N  C  G V+ A+ +   +   G
Sbjct: 203 LLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHG 262

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----------------------- 229
             PD  +Y+ ++   C +   +E   +  EM  N                          
Sbjct: 263 CKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAI 322

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
           K+ + M     +P+  T +  +DGLC  G V + +EL   L+   C+     + ++++G 
Sbjct: 323 KVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGL 382

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C    +E A EL  ++ C +   D V +N +I +L ++G + +   ++  M ENGC  D+
Sbjct: 383 CSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDI 442

Query: 350 DTFNTLM 356
            T+N+++
Sbjct: 443 VTYNSII 449



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 169/349 (48%), Gaps = 28/349 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++VTFN+++   C +G +  A ++V  M+  GC P++ T  +++ GL   G ++  +   
Sbjct: 301 DEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAV--- 357

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-----KDKGINANTL- 136
            E+++ +  +G   KP+   Y +++ GLC     +  ++L  EM         +  NT+ 
Sbjct: 358 -ELLSRLKSYG--CKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVI 414

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+K  +  A +++E M + G NP I TY  +++G C    ++ A+ L  ++   G  
Sbjct: 415 ASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCK 474

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ +++ L+ G C     E+A            +++   M   +  P+  T N  I  L
Sbjct: 475 PDIVTFNTLLKGLCSVDRWEDA------------EQLMVNMMHSDCPPDATTFNTVITSL 522

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G +L+ +E    +  + C      +N ++    K G  + A +L + ++  N   D+
Sbjct: 523 CQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMT--NGTPDL 580

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + YN +I  + K G++++   LL  M  NG + D  T+ +L     +++
Sbjct: 581 ITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICRED 629



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 158/340 (46%), Gaps = 28/340 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+  ++K  C     ++  +L  +MA+  C P+  T +T++T L + G ++  +K+   
Sbjct: 268 VTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKV--- 324

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            V+ M + G I  P++  Y S++DGLC    VD   +L   +K  G   +T+        
Sbjct: 325 -VDHMSEHGCI--PDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKG 381

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +   A  L+  M+     P   T+  ++   C  G V+ AI + + M+  G  PD
Sbjct: 382 LCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPD 441

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ +I+G C    +++AM +   +   G K            P+  T N  + GLC 
Sbjct: 442 IVTYNSIIDGLCNERCIDDAMELLSNLQSYGCK------------PDIVTFNTLLKGLCS 489

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
                +  +L   +  S+C      FN++I   C+ G+   A E    ++    + +   
Sbjct: 490 VDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQST 549

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YNI++ AL K G+  +E   LLS   NG   D+ T+NT++
Sbjct: 550 YNIVVDALLKAGKT-QEALKLLSGMTNGTP-DLITYNTVI 587



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 158/337 (46%), Gaps = 32/337 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P ++VTFN++I   C +G +  A ++V++M+  GC P++ T +++I GL     ++  + 
Sbjct: 404 PPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAM- 462

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLF-MEMKDKGINANTL-- 136
              E+++ +  +G   KP++  + +L+ GLC  DR  D  + +  M   D   +A T   
Sbjct: 463 ---ELLSNLQSYG--CKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNT 517

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC+K  L++A   L++M + G  P   TY  +++     GK   A+ L   M    
Sbjct: 518 VITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG- 576

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+ +Y+ +I+   K   +EEA+++ R M+ NG              P+T T      
Sbjct: 577 -TPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLS------------PDTITYRSLAY 623

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G+C+       + +   L+          +N ++ G C+    +IA + F  +     + 
Sbjct: 624 GICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMP 683

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           D   Y IL+ AL  E  + +   LL+++    C+L V
Sbjct: 684 DESTYIILLEALAYECLLDEAKQLLVNL----CSLGV 716



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 18/196 (9%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L+   C  G+V  A  +F ++   G    V +Y+ ++NGYC+   +E+A           
Sbjct: 104 LIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDA----------- 149

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
            +++ + M      P+TFT N  I  LC  G V + + +F  +    C   V  ++ L+ 
Sbjct: 150 -RRLISGMPF---PPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLD 205

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
             CK   +  A  L +++  K    D+V YN+LI+A+  EG + +   +L  +  +GC  
Sbjct: 206 ATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKP 265

Query: 348 DVDTFNTLMISFLQKE 363
           D  T+  ++ S    E
Sbjct: 266 DAVTYTPVLKSLCGSE 281


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 158/335 (47%), Gaps = 45/335 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+ GF  EG IR A  +   +  +G RP+V + +TL+ G  + G++N
Sbjct: 129 ECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L   M        G+ +P+V+ Y  LI+GLCK+                       
Sbjct: 189 EGFRLKNAM-----QASGV-QPDVYTYSVLINGLCKE----------------------- 219

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
               +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+ ++  M  +   PD
Sbjct: 220 ----SKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CK  ++++A ++  EMI+ G K            P+  T    IDG CK
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK------------PDKITYTTLIDGNCK 323

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           Y ++I+   K+G +   + LL  M+ +G    V T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L    ++E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEE-- 126

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKT 141
               +    Y  +++ +  L+ G  K+  +   + +F  +   G+       NTL+    
Sbjct: 127 ----NLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 142 KLVEAN---RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           KL + N   RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D VAY 
Sbjct: 291 DLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   ++ T+  ++  F +K
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 13/218 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + + + GL P + ++  L+NGY  +G +N    L ++M   G  PDV++YSVLIN
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G CK   +++A NV           +F+EM    +VP   T    IDG CKNG V   ME
Sbjct: 215 GLCKESKMDDA-NV-----------LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           ++  +   +    +  +N+LI G CK G  + A +L +++  K L  D + Y  LI    
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNC 322

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           KEG ++        M +    LD D   T +IS L +E
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLD-DVAYTALISGLCQE 359



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 17/207 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  A + F   + +   P N VTF +LI G C  G +  A ++ K+M +    P++ T
Sbjct: 220 SKMDDANVLFDEMLDKGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLIT 278

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
            +TLI GL + G++     L  EM+  G+       KP+   Y +LIDG CK+  ++   
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMIMKGL-------KPDKITYTTLIDGNCKEGDLETAF 331

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +    M  + I  + +        LC++ + V+A ++L  M+  GL P I TYT ++N +
Sbjct: 332 EYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEF 391

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFS 199
           C  G V     L   M R G+ P V +
Sbjct: 392 CKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 176/390 (45%), Gaps = 70/390 (17%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEG---------------------- 38
           + KVL A+  F + +RR   P++  TF+ LI G    G                      
Sbjct: 203 SGKVLAAMDHFEA-VRRSM-PVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIH 260

Query: 39  -------------NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
                         I++A  L++K+   GC P + T + L+ GL + G +   + L +++
Sbjct: 261 TYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 320

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           V NG         P+V  Y SLIDGL K++   +   LF EM  +G+  +T+        
Sbjct: 321 VDNGC-------TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRG 373

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L +  K+ +A+ + + M   G  P + T + +++G    G++  A+ +F SM  +G  P+
Sbjct: 374 LLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPN 433

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
              YS LI+G CK       M+ + EM+         +MK     P+T T NI IDGLCK
Sbjct: 434 EVVYSALIHGLCK----ARKMDCALEMLA--------QMKKAFCTPDTITYNILIDGLCK 481

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G V      F  +  + C+  V  +N LI G CK G  + A  + + +S    V     
Sbjct: 482 SGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRFV----- 536

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCA 346
           Y+ L+  L K G+++    L   ME +G A
Sbjct: 537 YSSLVDGLCKSGKLEGGCMLFHEMERSGVA 566



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 166/374 (44%), Gaps = 48/374 (12%)

Query: 19  YRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMAT-FGCRPNVTTCDTLITGLRRTGNMN 76
           +RP  DV T+N LI G+C+     +A  ++++M   FG  P++ T + ++ GL ++G   
Sbjct: 150 FRP--DVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSG--- 204

Query: 77  LTLKLHQEMVNGMGDFGGIYKP---NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG--I 131
                  +++  M  F  + +    +   +  LI+GL K  ++ Q   L  E    G  I
Sbjct: 205 -------KVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTI 257

Query: 132 NANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           + +T       L K  K+ EA  L+E +   G  P I TY  LLNG C +G++  AI L 
Sbjct: 258 DIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 317

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------------- 228
             +   G  PDV +Y+ LI+G  K     EA  + +EM   G                  
Sbjct: 318 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQT 377

Query: 229 ------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                   ++  M     VP+  T +  IDGL K G +   + +F ++E         ++
Sbjct: 378 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 437

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           ++LI G CK    + A E+  ++       D + YNILI  L K G ++        M E
Sbjct: 438 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLE 497

Query: 343 NGCALDVDTFNTLM 356
            GC  DV T+N L+
Sbjct: 498 AGCKPDVYTYNILI 511



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 153/344 (44%), Gaps = 38/344 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ V + +LI+G    G I  AS + K M + GC P+V T  T+I GL + G +   +++
Sbjct: 362 LDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRI 421

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            + M   G+        PN   Y +LI GLCK R +D   ++  +MK      +T+    
Sbjct: 422 FKSMEARGLA-------PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 474

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK   +  A    + M++ G  P ++TY  L++G C  G  + A  + D M+   
Sbjct: 475 LIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSR 534

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV-PETFTCNIFI 251
           F+     YS L++G CK+  +E            G   +F+EM+   V   +T T  IF 
Sbjct: 535 FV-----YSSLVDGLCKSGKLE------------GGCMLFHEMERSGVANSQTRTRLIF- 576

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK   V E + LF  +           +NS+I    K G       ++ +++ +   
Sbjct: 577 -HLCKANRVDEAVSLFNAIRKEGMP-HPYAYNSIISALIKSGKVNEGQAVYQEMT-RWWK 633

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
            D V YN L++ +    ++ + +Y  L M   G    V   + L
Sbjct: 634 PDRVTYNALLNGMIGANRMDRAHYYYLEMTGRGYVPPVSILHKL 677



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 135/311 (43%), Gaps = 49/311 (15%)

Query: 53  FGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM-GDFGGIYKPNVFCYGSLIDGLC 111
           FG + +V T + L+    RT       K H+E  N +  +   I++P+V  +  LI G C
Sbjct: 113 FGFQHSVHTGNALLDVFART-------KRHREAGNLLKNELATIFRPDVETWNVLITGYC 165

Query: 112 KDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
             R  ++   +  EM++                            G+ P + T+  +L+G
Sbjct: 166 LAREPEEAFAVIREMEE--------------------------DFGVAPSLKTHNLVLHG 199

Query: 172 YCLVGKVNVAIALFDSMARKGFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
            C  GKV  A+  F+++ R   MP    ++S+LING  K   + +A ++++E   NG   
Sbjct: 200 LCKSGKVLAAMDHFEAVRRS--MPVSAATFSILINGLVKAGMMIQAHSLAQETTTNG--- 254

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
                  C +   T+T    ++ L KN  + E + L   +  + C   +  +N+L+ G C
Sbjct: 255 -------CTIDIHTYTA--IVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLC 305

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  E A +L  K+       DVV Y  LI  LGKE +  +   L   M   G ALD  
Sbjct: 306 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTV 365

Query: 351 TFNTLMISFLQ 361
            +  L+   LQ
Sbjct: 366 CYTALIRGLLQ 376


>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
 gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 182/394 (46%), Gaps = 69/394 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +N++I   C EG   +A +LV+KM   G  P++ T +  I  L ++G +    ++ 
Sbjct: 222 NRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIF 281

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M   + +  G+ KPN   Y  +++G C + + ++ + +F  MK    N+ TL      
Sbjct: 282 RDMQ--IDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMK----NSETLSLRSYN 335

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                L +  KL+EA+ +L  M ++ + P +++Y  L++G C  G  + A ++   M   
Sbjct: 336 IWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRES 395

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF------ 245
           G  PD  +YS L++GYC+   + EA  V REMI  G    F  M  CN++  +       
Sbjct: 396 GVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVG---CFPNMYTCNILLHSLWKEGRA 452

Query: 246 --------------------TCNIFIDGLCKNGHVLEVMELFPTLEISNCE-------LF 278
                               TCN  I+GLCK G++ + +E+   +              F
Sbjct: 453 SEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSF 512

Query: 279 VEIFN----------------SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
           +++F+                ++I G CK G  + A +   ++  K L  D + ++  I+
Sbjct: 513 IDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIY 572

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              K+G++     +L  ME+ GC   + T+N+L+
Sbjct: 573 NYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLI 606



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 160/343 (46%), Gaps = 31/343 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI   C  G + +A ++  KM+  GC+PN  +   L+ G  R G  +  + L  EM
Sbjct: 155 TFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEM 214

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            +     G +  PN   Y ++I  LC +    + + L  +M++ G++ + +        L
Sbjct: 215 RSS----GAL--PNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAAL 268

Query: 138 CKKTKLVEANRLLELMM---QRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           CK  +++EA+R+   M    + GL  P   TY  +L G+C  G    A A+FDSM     
Sbjct: 269 CKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSET 328

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +  + SY++ + G  ++  + EA              I NEM   N+ P  ++ NI + G
Sbjct: 329 L-SLRSYNIWMLGLVRSGKLLEA------------HLILNEMAEKNIKPNLYSYNILVHG 375

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G   +   +   +  S        +++L+ G C+ G    A+ +  ++       +
Sbjct: 376 LCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPN 435

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +   NIL+H+L KEG+  +   LL  M E G  LD  T NT++
Sbjct: 436 MYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMI 478



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 169/357 (47%), Gaps = 34/357 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +++GFC EG   +A  +   M       ++ + +  + GL R+G +   L+ H
Sbjct: 296 NTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETL-SLRSYNIWMLGLVRSGKL---LEAH 351

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             ++N M +     KPN++ Y  L+ GLCK  +    + +   M++ G+  +T+      
Sbjct: 352 L-ILNEMAEKN--IKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLL 408

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C++ K++EAN +L  M+Q G  P ++T   LL+     G+ + A  L   M  +G+ 
Sbjct: 409 HGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYG 468

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------------IFNEMKLCNVV 241
            D  + + +ING CK  N+++A+ +   M   G                I N  K C  +
Sbjct: 469 LDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKC--L 526

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIAS 299
           P++ T    I GLCK G V E  +    LE+   +L  +  IF++ I   CK G    A 
Sbjct: 527 PDSITYATIIGGLCKVGRVDEAKKKL--LEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAF 584

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +  ++  K     +  YN LI  LG E QI +   L+  M+E G   +V T+N ++
Sbjct: 585 RVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNII 641



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 166/393 (42%), Gaps = 79/393 (20%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+++L+ G+C  G I +A+ ++++M   GC PN+ TC+ L+  L + G  +    L 
Sbjct: 400 DTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLL 459

Query: 83  Q---------------EMVNGMGDFGGIYK------------------------------ 97
           Q                M+NG+   G + K                              
Sbjct: 460 QMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIR 519

Query: 98  -------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTK 142
                  P+   Y ++I GLCK   VD+ K   +EM  K ++ ++L+        CK+ K
Sbjct: 520 NNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGK 579

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L  A R+L+ M ++G N  + TY  L+ G     ++     L D M  +G  P+V++Y+ 
Sbjct: 580 LSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNN 639

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL---CKNGH 259
           +I+   +   +++A  +  EM+  G            + P  +T  I I      C  G 
Sbjct: 640 IISCLSEGGKLKDATCLLDEMLQKG------------ISPNIYTFRILIGAFFKACDFGA 687

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
             E+ E+  +L      L+  +FN L+ G    G    A ELF     ++L      Y  
Sbjct: 688 AQELFEIALSLCGHKESLYSFMFNELLAG----GETLKAKELFEAALDRSLALKNFLYRD 743

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           LI  L K+G++   +++L  M +   + D  +F
Sbjct: 744 LIEKLCKDGKLDDASFILHKMMDKQYSFDPASF 776



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 126/274 (45%), Gaps = 17/274 (6%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           KP  + +  LI  LC+   ++  +++F +M +KG   N           C+         
Sbjct: 150 KPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGID 209

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           LL+ M   G  P    Y  +++  C  G+   A  L + M   G  PD+ +++  I   C
Sbjct: 210 LLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALC 269

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K+  + EA  + R+M      +I  EM L    P T T N+ ++G C  G   E   +F 
Sbjct: 270 KSGQILEASRIFRDM------QIDEEMGLPK--PNTVTYNLMLEGFCSEGMFEEARAIFD 321

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
           +++ S   L +  +N  + G  + G    A  + N+++ KN+  ++ +YNIL+H L K G
Sbjct: 322 SMKNSET-LSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYG 380

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
                  +L  M E+G A D  T++TL+  + ++
Sbjct: 381 MFSDARSILGLMRESGVAPDTVTYSTLLHGYCRR 414



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 48/260 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + + F++ I  +C +G +  A +++K+M   GC  ++ T ++LI GL     +     L 
Sbjct: 563 DSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLM 622

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
            EM        GI+ PNV+ Y ++I  L +   +     L  EM  KGI+ N        
Sbjct: 623 DEMKER-----GIF-PNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILI 676

Query: 135 --------------------TLLCKKTKL--------------VEANRLLELMMQRGLNP 160
                               +L   K  L              ++A  L E  + R L  
Sbjct: 677 GAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLAGGETLKAKELFEAALDRSLAL 736

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
             F Y  L+   C  GK++ A  +   M  K +  D  S+  +I+   K  +   A   +
Sbjct: 737 KNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVIDELGKRGSKHAADEFA 796

Query: 221 REMILNGFKKIFNEMKLCNV 240
             M+    +  FNE +  N+
Sbjct: 797 ERMMEMASETDFNEHENKNI 816


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 175/348 (50%), Gaps = 29/348 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTF+ L++ FC  G +  A Q++++M+  GC PN T C+ +I  + + G ++      
Sbjct: 280 NEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAY--- 336

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------- 135
            + +N MG +G    P+   Y +++ GLC+    +  K+L  EM  K    N        
Sbjct: 337 -DFLNNMGMYG--CNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFI 393

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            +LC+K  + +A +L+ELM + G +  I TY  L++G+C+ G+V+ A+ LF+++  +   
Sbjct: 394 CILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE--- 450

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+ L+ G C    ++ A  +   MI           K C +   TF  N+ +   
Sbjct: 451 PNTITYTTLLTGLCHAERLDAAAELLAGMI----------QKDCPLNAVTF--NVLVSFF 498

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G V E MEL   +    C   +  FN+L+ G  K    E A EL + L  K +  D 
Sbjct: 499 CQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDT 558

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + Y+ ++  L +E + ++   +L ++++ G    V  +N ++ +  ++
Sbjct: 559 ITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKR 606



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 163/347 (46%), Gaps = 29/347 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P++   +N+L+ G+C  G +  A +L+  M      P+  T   +I GL   G +   L 
Sbjct: 106 PVDVFAYNTLVAGYCRYGRLDAARRLIASMPV---PPDAYTYTPIIRGLCDRGRVGDALA 162

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  +M+          +P+V  Y  L++ +CK     +  ++  EM+ KG   N +    
Sbjct: 163 LLDDMLQRG------CQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNV 216

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               +C++ ++ +A  +L  +   G  P I +YT +L G C   + +    LF  M  K 
Sbjct: 217 IINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKK 276

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
            +P+  ++ +L+  +C+   VE A+ V ++M  +G              P T  CNI I+
Sbjct: 277 CVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG------------CTPNTTLCNIVIN 324

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            +CK G V +  +    + +  C      + +++RG C+ G +E A EL  ++  KN   
Sbjct: 325 AICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPP 384

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + V +N  I  L ++G I++   L+  M E GC++ + T+N L+  F
Sbjct: 385 NEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGF 431



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 143/341 (41%), Gaps = 29/341 (8%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           LI+  C  G   DA+++++     G   +V   +TL+ G  R G ++   +L   M    
Sbjct: 80  LIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLIASMP--- 136

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKT 141
                   P+ + Y  +I GLC    V     L  +M  +G   + +        +CK +
Sbjct: 137 ------VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSS 190

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
              EA  +L+ M  +G  P I TY  ++NG C  G+V+ A  + + ++  GF PD+ SY+
Sbjct: 191 GFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYT 250

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            ++ G C     ++             K +F EM     VP   T ++ +   C+ G V 
Sbjct: 251 TVLKGLCAARRWDD------------VKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVE 298

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
             +++   +    C     + N +I   CK G  + A +  N +       D ++Y  ++
Sbjct: 299 RAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVL 358

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             L + G+ +    LL  M    C  +  TFNT +    QK
Sbjct: 359 RGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQK 399



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 15/220 (6%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L  +  L EA RL+E    RG  P ++  T L+   C  G+ + A  +  +    G   D
Sbjct: 49  LIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVD 108

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           VF+Y+ L+ GYC+   ++ A            +++   M    V P+ +T    I GLC 
Sbjct: 109 VFAYNTLVAGYCRYGRLDAA------------RRLIASMP---VPPDAYTYTPIIRGLCD 153

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V + + L   +    C+  V  +  L+   CK   F  A  + +++  K    ++V 
Sbjct: 154 RGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVT 213

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN++I+ + +EG++     +L  +   G   D+ ++ T++
Sbjct: 214 YNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVL 253



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 128/300 (42%), Gaps = 29/300 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N+VTFN+ I   C +G I  A +L++ M  +GC   + T + L+ G    G ++  L+
Sbjct: 383 PPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALE 442

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANT--- 135
           L   +           +PN   Y +L+ GLC    +D   +L   M  KD  +NA T   
Sbjct: 443 LFNNLP---------CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNV 493

Query: 136 ---LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                C+K  + EA  L+  MM+ G  P + T+  LL+G         A+ L   +  KG
Sbjct: 494 LVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKG 553

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              D  +YS +++   +    EEA+ +   +   G +            P+    N  + 
Sbjct: 554 VSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMR------------PKVGMYNKILF 601

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK     + ++ F  +  + C      +  LI G    G+ + A  + ++L  K +++
Sbjct: 602 ALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVLS 661



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 64/181 (35%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PLN VTFN L+  FC +G + +A +LV +M   GC PN+ T +TL+ G+ +  N    L+
Sbjct: 485 PLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALE 544

Query: 81  LHQ-------------------------------EMVNGMGDFG-----GIYK------- 97
           L                                 +M++ + D G     G+Y        
Sbjct: 545 LLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALC 604

Query: 98  ---------------------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
                                PN   Y  LI+GL  + L+ + + +  E+  KG+ + +L
Sbjct: 605 KRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVLSKSL 664

Query: 137 L 137
           L
Sbjct: 665 L 665


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 171/379 (45%), Gaps = 51/379 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN--------MNLT 78
           FNSLI  +C  G+   A +L+KKM   GC+P     + LI G+   GN        + L 
Sbjct: 372 FNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI--CGNEKLPSLDVLELA 429

Query: 79  LKLHQEMVN------------------GMGDFGGIYK-----------PNVFCYGSLIDG 109
            K + EM++                  G G F   Y            P+   Y  +I  
Sbjct: 430 EKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPV 161
           LC    VD    LF EMK   +  +           CK   L +A +  + M++ G  P 
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           + TYT L++ Y    K++ A  LF+ M  +G +P+V +Y+ LI+G+CK+  +E+A  +  
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 222 EMILNGF---KKIFNEMKLCNVV-PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            M  N       ++ ++   N+  P  FT    +DGLCK   V E  +L   + +  CE 
Sbjct: 610 RMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
              ++++LI G CK G  + A  +F K+S +    +V  Y+ LI  L K+ ++     +L
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 338 LSMEENGCALDVDTFNTLM 356
             M EN CA +V  +  ++
Sbjct: 730 SRMLENSCAPNVIIYTEMI 748



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 149/347 (42%), Gaps = 50/347 (14%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   +R    P N VT+ +LI  +     +  A++L + M + GC PNV T   LI
Sbjct: 534 ARKWFDEMVRDGCAP-NVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALI 592

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMG----------DFGGIYKPNVFCYGSLIDGLCKDRLV 116
            G  ++G +    +++  M               D G I  PN+F YG+L+DGLCK   V
Sbjct: 593 DGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652

Query: 117 DQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
            + +D                           LL++M   G  P    Y  L++G+C VG
Sbjct: 653 KEARD---------------------------LLDVMSVEGCEPNHIVYDALIDGFCKVG 685

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           K++ A  +F  M+ +G+ P+V++YS LI+   K+  ++ A+ V   M+ N          
Sbjct: 686 KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLEN---------- 735

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
             +  P        IDGLCK G   E   L   +E   C   V  + ++I G  K G  +
Sbjct: 736 --SCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVD 793

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
              EL  ++  K    + V Y +LI+     G +   + LL  M++ 
Sbjct: 794 KCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 165/382 (43%), Gaps = 53/382 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V  ++L +  C  G    A  ++++M + G  P+ +T   +I  L     ++    L
Sbjct: 443 LNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLL 502

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM +          P+VF Y  LID  CK  L+ Q +  F EM   G   N +     
Sbjct: 503 FEEMKSNH------VVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTAL 556

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  K+  AN L E+M+  G  P + TYT L++G+C  G++  A  ++  M     
Sbjct: 557 IHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNAD 616

Query: 194 MPDV----------------FSYSVLINGYCKNFNVEEAMN--------------VSREM 223
           +PDV                F+Y  L++G CK   V+EA +              +  + 
Sbjct: 617 IPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDA 676

Query: 224 ILNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +++GF K+         F +M      P  +T +  ID L K+  +   +++   +  ++
Sbjct: 677 LIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS 736

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V I+  +I G CK G  + A  L + +  K    +VV Y  +I   GK G++ K  
Sbjct: 737 CAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCL 796

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L+  M   GCA +  T+  L+
Sbjct: 797 ELMRQMGAKGCAPNFVTYRVLI 818



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 153/338 (45%), Gaps = 41/338 (12%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           R  N  T+ +L+ G C    +++A  L+  M+  GC PN    D LI G  + G ++   
Sbjct: 632 RDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEA- 690

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
              Q +   M + G  Y PNV+ Y SLID L KD+ +D    +   M +     N +   
Sbjct: 691 ---QMVFTKMSERG--YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYT 745

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  K  EA RL+ +M ++G +P + TYT +++G+   GKV+  + L   M  K
Sbjct: 746 EMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIF----- 232
           G  P+  +Y VLIN  C    +++A  +  EM              ++ GF + F     
Sbjct: 806 GCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLG 865

Query: 233 --NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV----EIFNSLI 286
             +E+     VP      I ID  CK G +   +EL    E+S+C  +     ++++SLI
Sbjct: 866 LLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHK--EMSSCTSYSAADKDLYSSLI 923

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                    + A EL+  +  +  + ++  +  L+  L
Sbjct: 924 ESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGL 961



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 161/419 (38%), Gaps = 84/419 (20%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTL 65
           AL   G      Y+P + +T+N+L++ F +E +  D + LV ++M+  G   +  T    
Sbjct: 216 ALEELGRLKDLGYKP-SRLTYNALVRVF-LEADRLDTAYLVHREMSDSGFNMDGYTLGCF 273

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L + G     L L ++           +K +   Y  +I GLC+  L ++  D    
Sbjct: 274 VHLLCKAGRWREALALIEKEE---------FKLDTVIYTQMISGLCEASLFEEAMDFLSR 324

Query: 126 MKDKG-----INANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M+        +    LLC   +K +L    R+L +M+  G  P    +  L++ YC  G 
Sbjct: 325 MRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGD 384

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKN--------------------------- 210
            + A  L   M   G  P    Y++LI G C N                           
Sbjct: 385 YSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLN 444

Query: 211 -FNV-------------EEAMNVSREMILNGFKK-----------------------IFN 233
             NV             E+A ++ REM+  GF                         +F 
Sbjct: 445 KVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFE 504

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EMK  +VVP+ FT  I ID  CK G + +  + F  +    C   V  + +LI    K  
Sbjct: 505 EMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKAR 564

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
               A+ELF  +  +  + +VV Y  LI    K GQI+K   +   M  N    DVD +
Sbjct: 565 KMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMY 623



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L+   C  G  NVA+     +   G+ P   +Y+ L+  + +   ++ A  V REM  +G
Sbjct: 203 LIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSG 262

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
           F              + +T   F+  LCK G   E + L   +E    +L   I+  +I 
Sbjct: 263 FNM------------DGYTLGCFVHLLCKAGRWREALAL---IEKEEFKLDTVIYTQMIS 307

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C+  +FE A +  +++   + + +VV Y IL+    ++ Q+ +   +L  M   GC  
Sbjct: 308 GLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYP 367

Query: 348 DVDTFNTLMISF 359
               FN+L+ ++
Sbjct: 368 SRRIFNSLIHAY 379



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 113/301 (37%), Gaps = 30/301 (9%)

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK-----TK 142
           G G  G +Y   +   G   +    ++ + + +D   E+  K +N     C +       
Sbjct: 157 GYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVA 216

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L E  RL +L    G  P   TY  L+  +    +++ A  +   M+  GF  D ++   
Sbjct: 217 LEELGRLKDL----GYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGC 272

Query: 203 LINGYCKNFNVEEAM-----------NVSREMILNGF--KKIFNE-------MKLCNVVP 242
            ++  CK     EA+            V    +++G     +F E       M+  + +P
Sbjct: 273 FVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIP 332

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              T  I + G  +   +     +   +    C     IFNSLI   C+ G +  A +L 
Sbjct: 333 NVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD-TFNTLMISFLQ 361
            K+         V YNILI  +    ++   + L L+ +  G  LD     N + +S L 
Sbjct: 393 KKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 362 K 362
           +
Sbjct: 453 R 453


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 171/379 (45%), Gaps = 51/379 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN--------MNLT 78
           FNSLI  +C  G+   A +L+KKM   GC+P     + LI G+   GN        + L 
Sbjct: 372 FNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI--CGNEKLPSLDVLELA 429

Query: 79  LKLHQEMVN------------------GMGDFGGIYK-----------PNVFCYGSLIDG 109
            K + EM++                  G G F   Y            P+   Y  +I  
Sbjct: 430 EKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPV 161
           LC    VD    LF EMK   +  +           CK   L +A +  + M++ G  P 
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           + TYT L++ Y    K++ A  LF+ M  +G +P+V +Y+ LI+G+CK+  +E+A  +  
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 222 EMILNGF---KKIFNEMKLCNVV-PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            M  N       ++ ++   N+  P  FT    +DGLCK   V E  +L   + +  CE 
Sbjct: 610 RMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
              ++++LI G CK G  + A  +F K+S +    +V  Y+ LI  L K+ ++     +L
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 338 LSMEENGCALDVDTFNTLM 356
             M EN CA +V  +  ++
Sbjct: 730 SRMLENSCAPNVIIYTEMI 748



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 149/347 (42%), Gaps = 50/347 (14%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   +R    P N VT+ +LI  +     +  A++L + M + GC PNV T   LI
Sbjct: 534 ARKWFDEMVRDGCAP-NVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALI 592

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMG----------DFGGIYKPNVFCYGSLIDGLCKDRLV 116
            G  ++G +    +++  M               D G I  PN+F YG+L+DGLCK   V
Sbjct: 593 DGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652

Query: 117 DQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
            + +D                           LL++M   G  P    Y  L++G+C VG
Sbjct: 653 KEARD---------------------------LLDVMSVEGCEPNHIVYDALIDGFCKVG 685

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           K++ A  +F  M+ +G+ P+V++YS LI+   K+  ++ A+ V   M+ N          
Sbjct: 686 KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLEN---------- 735

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
             +  P        IDGLCK G   E   L   +E   C   V  + ++I G  K G  +
Sbjct: 736 --SCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVD 793

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
              EL  ++  K    + V Y +LI+     G +   + LL  M++ 
Sbjct: 794 KCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 165/382 (43%), Gaps = 53/382 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V  ++L +  C  G    A  ++++M + G  P+ +T   +I  L     ++    L
Sbjct: 443 LNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLL 502

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM +          P+VF Y  LID  CK  L+ Q +  F EM   G   N +     
Sbjct: 503 FEEMKSNH------VVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTAL 556

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  K+  AN L E+M+  G  P + TYT L++G+C  G++  A  ++  M     
Sbjct: 557 IHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNAD 616

Query: 194 MPDV----------------FSYSVLINGYCKNFNVEEAMN--------------VSREM 223
           +PDV                F+Y  L++G CK   V+EA +              +  + 
Sbjct: 617 IPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDA 676

Query: 224 ILNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +++GF K+         F +M      P  +T +  ID L K+  +   +++   +  ++
Sbjct: 677 LIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS 736

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V I+  +I G CK G  + A  L + +  K    +VV Y  +I   GK G++ K  
Sbjct: 737 CAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCL 796

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L+  M   GCA +  T+  L+
Sbjct: 797 ELMRQMGAKGCAPNFVTYRVLI 818



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 153/338 (45%), Gaps = 41/338 (12%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           R  N  T+ +L+ G C    +++A  L+  M+  GC PN    D LI G  + G ++   
Sbjct: 632 RDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEA- 690

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
              Q +   M + G  Y PNV+ Y SLID L KD+ +D    +   M +     N +   
Sbjct: 691 ---QMVFTKMSERG--YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYT 745

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  K  EA RL+ +M ++G +P + TYT +++G+   GKV+  + L   M  K
Sbjct: 746 EMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIF----- 232
           G  P+  +Y VLIN  C    +++A  +  EM              ++ GF + F     
Sbjct: 806 GCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLG 865

Query: 233 --NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV----EIFNSLI 286
             +E+     VP      I ID  CK G +   +EL    E+S+C  +     ++++SLI
Sbjct: 866 LLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHK--EMSSCTSYSAADKDLYSSLI 923

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                    + A EL+  +  +  + ++  +  L+  L
Sbjct: 924 ESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGL 961



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 161/419 (38%), Gaps = 84/419 (20%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTL 65
           AL   G      Y+P + +T+N+L++ F +E +  D + LV ++M+  G   +  T    
Sbjct: 216 ALEELGRLKDLGYKP-SRLTYNALVRVF-LEADRLDTAYLVHREMSDSGFNMDGYTLGCF 273

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L + G     L L ++           +K +   Y  +I GLC+  L ++  D    
Sbjct: 274 VHLLCKAGRWREALALIEKEE---------FKLDTVIYTQMISGLCEASLFEEAMDFLSR 324

Query: 126 MKDKG-----INANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M+        +    LLC   +K +L    R+L +M+  G  P    +  L++ YC  G 
Sbjct: 325 MRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGD 384

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKN--------------------------- 210
            + A  L   M   G  P    Y++LI G C N                           
Sbjct: 385 YSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLN 444

Query: 211 -FNV-------------EEAMNVSREMILNGFKK-----------------------IFN 233
             NV             E+A ++ REM+  GF                         +F 
Sbjct: 445 KVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFE 504

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EMK  +VVP+ FT  I ID  CK G + +  + F  +    C   V  + +LI    K  
Sbjct: 505 EMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKAR 564

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
               A+ELF  +  +  + +VV Y  LI    K GQI+K   +   M  N    DVD +
Sbjct: 565 KMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMY 623



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L+   C  G  NVA+     +   G+ P   +Y+ L+  + +   ++ A  V REM  +G
Sbjct: 203 LIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSG 262

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
           F              + +T   F+  LCK G   E + L   +E    +L   I+  +I 
Sbjct: 263 FNM------------DGYTLGCFVHLLCKAGRWREALAL---IEKEEFKLDTVIYTQMIS 307

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C+  +FE A +  +++   + + +VV Y IL+    ++ Q+ +   +L  M   GC  
Sbjct: 308 GLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYP 367

Query: 348 DVDTFNTLMISF 359
               FN+L+ ++
Sbjct: 368 SRRIFNSLIHAY 379



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 107/287 (37%), Gaps = 29/287 (10%)

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK-----TK 142
           G G  G +Y   +   G   +    ++ + + +D   E+  K +N     C +       
Sbjct: 157 GYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVA 216

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L E  RL +L    G  P   TY  L+  +    +++ A  +   M+  GF  D ++   
Sbjct: 217 LEELGRLKDL----GYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGC 272

Query: 203 LINGYCKNFNVEEAM-----------NVSREMILNGF--KKIFNE-------MKLCNVVP 242
            ++  CK     EA+            V    +++G     +F E       M+  + +P
Sbjct: 273 FVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIP 332

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              T  I + G  +   +     +   +    C     IFNSLI   C+ G +  A +L 
Sbjct: 333 NVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
            K+         V YNILI  +    ++   + L L+ +  G  LD 
Sbjct: 393 KKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDA 439


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 171/379 (45%), Gaps = 51/379 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN--------MNLT 78
           FNSLI  +C  G+   A +L+KKM   GC+P     + LI G+   GN        + L 
Sbjct: 372 FNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI--CGNEKLPSLDVLELA 429

Query: 79  LKLHQEMVN------------------GMGDFGGIYK-----------PNVFCYGSLIDG 109
            K + EM++                  G G F   Y            P+   Y  +I  
Sbjct: 430 EKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPV 161
           LC    VD    LF EMK   +  +           CK   L +A +  + M++ G  P 
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           + TYT L++ Y    K++ A  LF+ M  +G +P+V +Y+ LI+G+CK+  +E+A  +  
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 222 EMILNGF---KKIFNEMKLCNVV-PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            M  N       ++ ++   N+  P  FT    +DGLCK   V E  +L   + +  CE 
Sbjct: 610 RMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
              ++++LI G CK G  + A  +F K+S +    +V  Y+ LI  L K+ ++     +L
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 338 LSMEENGCALDVDTFNTLM 356
             M EN CA +V  +  ++
Sbjct: 730 SRMLENSCAPNVIIYTEMI 748



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 149/347 (42%), Gaps = 50/347 (14%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   +R    P N VT+ +LI  +     +  A++L + M + GC PNV T   LI
Sbjct: 534 ARKWFDEMVRDGCAP-NVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALI 592

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMG----------DFGGIYKPNVFCYGSLIDGLCKDRLV 116
            G  ++G +    +++  M               D G I  PN+F YG+L+DGLCK   V
Sbjct: 593 DGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652

Query: 117 DQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
            + +D                           LL++M   G  P    Y  L++G+C VG
Sbjct: 653 KEARD---------------------------LLDVMSVEGCEPNHIVYDALIDGFCKVG 685

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           K++ A  +F  M+ +G+ P+V++YS LI+   K+  ++ A+ V   M+ N          
Sbjct: 686 KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLEN---------- 735

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
             +  P        IDGLCK G   E   L   +E   C   V  + ++I G  K G  +
Sbjct: 736 --SCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVD 793

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
              EL  ++  K    + V Y +LI+     G +   + LL  M++ 
Sbjct: 794 KCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 165/382 (43%), Gaps = 53/382 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V  ++L +  C  G    A  ++++M + G  P+ +T   +I  L     ++    L
Sbjct: 443 LNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLL 502

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM +          P+VF Y  LID  CK  L+ Q +  F EM   G   N +     
Sbjct: 503 FEEMKSNH------VVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTAL 556

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  K+  AN L E+M+  G  P + TYT L++G+C  G++  A  ++  M     
Sbjct: 557 IHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNAD 616

Query: 194 MPDV----------------FSYSVLINGYCKNFNVEEAMN--------------VSREM 223
           +PDV                F+Y  L++G CK   V+EA +              +  + 
Sbjct: 617 IPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDA 676

Query: 224 ILNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +++GF K+         F +M      P  +T +  ID L K+  +   +++   +  ++
Sbjct: 677 LIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS 736

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V I+  +I G CK G  + A  L + +  K    +VV Y  +I   GK G++ K  
Sbjct: 737 CAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCL 796

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L+  M   GCA +  T+  L+
Sbjct: 797 ELMRQMGAKGCAPNFVTYRVLI 818



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 152/338 (44%), Gaps = 41/338 (12%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           R  N  T+ +L+ G C    +++A  L+  M+  GC PN    D LI G  + G ++   
Sbjct: 632 RDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEA- 690

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
              Q +   M + G  Y PNV+ Y SLID L KD+ +D    +   M +     N +   
Sbjct: 691 ---QMVFTKMSERG--YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYT 745

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  K  EA RL+ +M ++G +P + TYT +++G+   GKV+  + L   M  K
Sbjct: 746 EMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIF----- 232
           G  P+  +Y VLIN  C    +++A  +  EM              ++ GF + F     
Sbjct: 806 GCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLG 865

Query: 233 --NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV----EIFNSLI 286
             +E+     VP      I ID  CK G +   +EL   +  S+C  +     ++++SLI
Sbjct: 866 LLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXM--SSCTSYSAADKDLYSSLI 923

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                    + A EL+  +  +  + ++  +  L+  L
Sbjct: 924 ESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGL 961



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 161/419 (38%), Gaps = 84/419 (20%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTL 65
           AL   G      Y+P + +T+N+L++ F +E +  D + LV ++M+  G   +  T    
Sbjct: 216 ALEELGRLKDLGYKP-SRLTYNALVRVF-LEADRLDTAYLVHREMSDSGFNMDGYTLGCF 273

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           +  L + G     L L ++           +K +   Y  +I GLC+  L ++  D    
Sbjct: 274 VHLLCKAGRWREALALIEKEE---------FKLDTVIYTQMISGLCEASLFEEAMDFLSR 324

Query: 126 MKDKG-----INANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M+        +    LLC   +K +L    R+L +M+  G  P    +  L++ YC  G 
Sbjct: 325 MRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGD 384

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKN--------------------------- 210
            + A  L   M   G  P    Y++LI G C N                           
Sbjct: 385 YSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLN 444

Query: 211 -FNV-------------EEAMNVSREMILNGFKK-----------------------IFN 233
             NV             E+A ++ REM+  GF                         +F 
Sbjct: 445 KVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFE 504

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EMK  +VVP+ FT  I ID  CK G + +  + F  +    C   V  + +LI    K  
Sbjct: 505 EMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKAR 564

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
               A+ELF  +  +  + +VV Y  LI    K GQI+K   +   M  N    DVD +
Sbjct: 565 KMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMY 623



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L+   C  G  NVA+     +   G+ P   +Y+ L+  + +   ++ A  V REM  +G
Sbjct: 203 LIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSG 262

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
           F              + +T   F+  LCK G   E + L   +E    +L   I+  +I 
Sbjct: 263 FNM------------DGYTLGCFVHLLCKAGRWREALAL---IEKEEFKLDTVIYTQMIS 307

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C+  +FE A +  +++   + + +VV Y IL+    ++ Q+ +   +L  M   GC  
Sbjct: 308 GLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYP 367

Query: 348 DVDTFNTLMISF 359
               FN+L+ ++
Sbjct: 368 SRRIFNSLIHAY 379



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 107/287 (37%), Gaps = 29/287 (10%)

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK-----TK 142
           G G  G +Y   +   G   +    ++ + + +D   E+  K +N     C +       
Sbjct: 157 GYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVA 216

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L E  RL +L    G  P   TY  L+  +    +++ A  +   M+  GF  D ++   
Sbjct: 217 LEELGRLKDL----GYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGC 272

Query: 203 LINGYCKNFNVEEAM-----------NVSREMILNGF--KKIFNE-------MKLCNVVP 242
            ++  CK     EA+            V    +++G     +F E       M+  + +P
Sbjct: 273 FVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIP 332

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              T  I + G  +   +     +   +    C     IFNSLI   C+ G +  A +L 
Sbjct: 333 NVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
            K+         V YNILI  +    ++   + L L+ +  G  LD 
Sbjct: 393 KKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDA 439


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 178/399 (44%), Gaps = 71/399 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+++LI G C  G++     L+++M      PNV    +++ G  + G +N  + + 
Sbjct: 226 NCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVM 285

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MV           PNVF YG+LIDG  K        DLF EMK +G+  N        
Sbjct: 286 RKMVQRN------ILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFV 339

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L +  ++ EA+ L + MM RGL P    YT +++G+   GK + A  +   M  K   
Sbjct: 340 NNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSG 399

Query: 195 PDVFSYSVLINGYCK--NFNVEEAMNVSREM-----------ILNGF---------KKIF 232
            DV +Y+VLING  K   +  E      R++           ++N +          K+ 
Sbjct: 400 FDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLL 459

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF---------PT-------LEISN-- 274
           NEMK   + P + TCNI +  LC  G + + M+L          PT       L+ S+  
Sbjct: 460 NEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKS 519

Query: 275 -----------------CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
                             +L +  +N+LI   C+ G+   A+ +F  +  K ++AD++ Y
Sbjct: 520 RRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITY 579

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N LIH       +KK   +   M   G + +V+T+N L+
Sbjct: 580 NALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILL 618



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 189/412 (45%), Gaps = 86/412 (20%)

Query: 21  PLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           P  D VT+N+L+ GFC  G++  A +L+ +++     PNV T  TLI    ++  +   L
Sbjct: 48  PAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDAL 107

Query: 80  KLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
            ++ EM V  +        P+V  Y  +++GLCK   V++ K +F EM++ G+  N    
Sbjct: 108 YMYDEMTVKSL-------VPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSY 160

Query: 137 ------LCKKTKLVEA-----------------------------------NRLLELMMQ 155
                 L K+  + EA                                     + +++++
Sbjct: 161 ATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLE 220

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
             L P   TY+ L++G+C +G VN    L   M  K   P+V  YS +++GY K   + E
Sbjct: 221 ESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNE 280

Query: 216 AMNVSREMI--------------LNGFKK---------IFNEMKLCNVVPETFTCNIFID 252
           AM+V R+M+              ++G+ K         +F EMK   +    F  + F++
Sbjct: 281 AMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVN 340

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKFG----IFEIASELFNKLSC 307
            L ++G + E  ELF  + +S   L   + + S++ G  K G     F IA E+  K S 
Sbjct: 341 NLKRSGRMEEADELFKDM-MSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSG 399

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
                DVVAYN+LI+ L K G+ + E++    M + G A D  TFNT++ ++
Sbjct: 400 ----FDVVAYNVLINGLFKLGKYESESF-HTGMRQLGLAPDSATFNTMINAY 446



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 135/274 (49%), Gaps = 20/274 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANR 148
           + +V  +  LIDG C++  + +  +L   MK +G     +  NTL+   CK   L  A +
Sbjct: 14  RRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKK 73

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L+  +    L P + TYT L++ YC    +  A+ ++D M  K  +PDV +Y+ ++NG C
Sbjct: 74  LMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLC 133

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K+  VEEA            K +F EM+   VVP  F+    ID L K G+V E   L  
Sbjct: 134 KSGKVEEA------------KSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQG 181

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            + +      V ++ +L+ G  K G+   A ++F  L  ++LV + V Y+ LI    K G
Sbjct: 182 RMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLG 241

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            + K   LL  MEE     +V  +++++  + +K
Sbjct: 242 DVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKK 275



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 165/397 (41%), Gaps = 74/397 (18%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN LI G+C  G I  A +L++ M T G  P++ T +TL+ G  + G++    KL     
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKL----- 74

Query: 87  NGMGDFGGI-YKPNVFCYGSLID-----------------------------------GL 110
             MG+   +  +PNV  Y +LID                                   GL
Sbjct: 75  --MGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 111 CKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVI 162
           CK   V++ K +F EM++ G+  N          L K+  + EA  L   M+ RG+   +
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDV 192

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
             YT L++G    G  N A  +F  +  +  +P+  +YS LI+G+CK  +V +   + +E
Sbjct: 193 VVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQE 252

Query: 223 M--------------ILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           M              I++G+ K         +  +M   N++P  F     IDG  K   
Sbjct: 253 MEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQ 312

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
               ++LF  ++    E    + +S +    + G  E A ELF  +  + L+ D V Y  
Sbjct: 313 RGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTS 372

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++    K G+      +   M E     DV  +N L+
Sbjct: 373 MMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLI 409



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 156/334 (46%), Gaps = 29/334 (8%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           +F + +R+     +  TFN++I  +C EGN+ +A +L+ +M ++G +PN  TC+ L+  L
Sbjct: 422 SFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRL 481

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
              G +  T+ L  +M+  MG     + P    + +++D   K R  D       ++   
Sbjct: 482 CAAGEIEKTMDLLNDMLV-MG-----FHPTPTTHKAVLDASSKSRRADVILHXHDQLVGM 535

Query: 130 GI-----NANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           G+       NTL+   C+   +  A  + + MM +G+   I TY  L++GYC+   +  A
Sbjct: 536 GVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKA 595

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
            A+   M  +G  P+V +Y++L+ G      ++EA              + N+MK   +V
Sbjct: 596 FAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAG------------LVNQMKERGLV 643

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P   T +I + G  K G++ E ++L+  +           +N LI    K      A EL
Sbjct: 644 PNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKEL 703

Query: 302 FNKLSCKNLVADVVAYNILI---HALGKEGQIKK 332
             ++  + +  +   Y+ILI   + L K+ ++ K
Sbjct: 704 MQEMQVRGIPPNSSTYDILICGWYKLSKQPELNK 737



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 149/359 (41%), Gaps = 28/359 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   + R   P + V + S++ GF   G   DA  + ++M       +V   + LI GL 
Sbjct: 355 FKDMMSRGLLP-DRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLF 413

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G         +    GM   G    P+   + ++I+  CK+  +     L  EMK  G
Sbjct: 414 KLGKYE-----SESFHTGMRQLG--LAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYG 466

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           +  N++        LC   ++ +   LL  M+  G +P   T+  +L+      + +V +
Sbjct: 467 LKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVIL 526

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
              D +   G   D+ +Y+ LI+ +C+   +  A  V ++M+  G            ++ 
Sbjct: 527 HXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKG------------ILA 574

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T N  I G C + H+ +   +   +        VE +N L+ G     + + A+ L 
Sbjct: 575 DIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLV 634

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           N++  + LV +   Y+IL+   GK G +K+   L   M   G      T+N L+  F +
Sbjct: 635 NQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAK 693



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 135/321 (42%), Gaps = 68/321 (21%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N+LI  FC  G IR A+ + K M   G   ++ T + LI G   + ++     +H +M
Sbjct: 543 TYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQM 602

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           +       G+  PNV  Y  L+ GL   RL+ +   L  +MK                  
Sbjct: 603 LTE-----GV-SPNVETYNILLGGLSAARLIKEAAGLVNQMK------------------ 638

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
                    +RGL P   TY  L++G+  +G +   + L+  M  KGF+P   +Y+VLI+
Sbjct: 639 ---------ERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLIS 689

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL----------- 254
            + K   + +A            K++  EM++  + P + T +I I G            
Sbjct: 690 CFAKGKKMSQA------------KELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNK 737

Query: 255 -CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF-----GIFEIASELFNKLSCK 308
             K  +  E   LF  +   N + F+   N+L   C  F     G    A  + NKL  K
Sbjct: 738 SLKRSYQAEAKRLFEEM---NEKGFIPCENTL--ACISFTLAKPGKKADAQRILNKLYKK 792

Query: 309 NLVADVVAYNILIHALGKEGQ 329
             V +++A  +L  +  ++G+
Sbjct: 793 KTVQELLA-GVLWESRERKGK 812


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 169/355 (47%), Gaps = 39/355 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+ G C +G   DA ++  +M   G  PNV     L++ L   G ++  ++L 
Sbjct: 206 NRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQL- 264

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG--INANTLLCKK 140
              +  M D G +  P+   Y + + GLCK   V++     + ++D G  +      C  
Sbjct: 265 ---LGSMKDKGCL--PDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLI 319

Query: 141 TKLVEANRLLE------LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L +A R  E       M++R ++P +  YT ++ G    G++  A++  D M +KGF+
Sbjct: 320 DGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFV 379

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD F Y+ ++   C + ++E A  +  EM+ N            N+V ++ T  I I GL
Sbjct: 380 PDTFCYNTVLKVLCDHGDLERAHTLRSEMLQN------------NLVLDSTTQTIMICGL 427

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC------- 307
           CK G V E M++F  +    C+  V  +N+LI G  + G  E A  LF+K+         
Sbjct: 428 CKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLF 487

Query: 308 ------KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                  N V D  +   L+H + + GQ+ K   LL S+ ++G   DV T+NTL+
Sbjct: 488 LRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLI 542



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 147/350 (42%), Gaps = 26/350 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +   F +L+      G   DA Q   +M  F  RP     +T++  L  +G + L L 
Sbjct: 134 PASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALA 193

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------ 134
           L+  MV           PN   Y  L+DGLCK  +      +F EM D+GI  N      
Sbjct: 194 LYNRMV------AAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTV 247

Query: 135 --TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             + LC   K+ EA +LL  M  +G  P   TY   L+G C VG+VN A      +   G
Sbjct: 248 LLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGG 307

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F   +  YS LI+G  +    +E           G+ K   E    N+ P+     I I 
Sbjct: 308 FALGLKGYSCLIDGLFQARRFDEGF---------GYYKTMLER---NISPDVVLYTIMIR 355

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G  + G + + +     ++          +N++++  C  G  E A  L +++   NLV 
Sbjct: 356 GCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVL 415

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           D     I+I  L K G + +   +   M E+GC   V T+N L+  F ++
Sbjct: 416 DSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYRE 465



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 171/391 (43%), Gaps = 39/391 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   + R   P N   +  L+   C  G I +A QL+  M   GC P+  T +  +
Sbjct: 226 ALKMFDEMLDRGIMP-NVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFL 284

Query: 67  TGLRRTGNMN---------------LTLKLHQEMVNGMG-----DFG-GIYK-------- 97
           +GL + G +N               L LK +  +++G+      D G G YK        
Sbjct: 285 SGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNIS 344

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRL 149
           P+V  Y  +I G  +   ++        MK KG   +T        +LC    L  A+ L
Sbjct: 345 PDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTL 404

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              M+Q  L     T T ++ G C  G V+ A+ +FD M   G  P V +Y+ LI+G+ +
Sbjct: 405 RSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYR 464

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKL-CNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
              +EEA  +  +M +     +F  + L  N V ++ +    +  +C++G VL+  +L  
Sbjct: 465 EGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLR 524

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
           ++  S     V  +N+LI G CK    + A  LF +L  K +  D + Y  LI  L +  
Sbjct: 525 SIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAH 584

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +      L  ++ ++G +  +  +N++M S 
Sbjct: 585 RENDAMMLFQNILQSGSSPSLSIYNSMMRSL 615



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 127/300 (42%), Gaps = 41/300 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +  +I+G    G I DA   +  M   G  P+    +T++  L   G++     L  E
Sbjct: 348 VLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSE 407

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+          +  + C      GLCK  LVD+   +F EM + G +   +        
Sbjct: 408 MLQNNLVLDSTTQTIMIC------GLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIF--------------TYTPLLNGYCLVGKVNVAI 182
             ++ +L EA R+L   M+ G NP +F              +   L++  C  G+V  A 
Sbjct: 462 FYREGRLEEA-RMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAY 520

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            L  S+   G +PDV +Y+ LING CK  N            L+G  ++F E++L  + P
Sbjct: 521 KLLRSIIDSGVVPDVVTYNTLINGLCKARN------------LDGAVRLFKELQLKGISP 568

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDGL +     + M LF  +  S     + I+NS++R  C+      A  L+
Sbjct: 569 DEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 25/240 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+  T   +I G C  G + +A Q+  +M   GC P V T + LI G  R G +     L
Sbjct: 415 LDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARML 474

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
             +M   MG+      P++F   +L  G  + R  +  + L  +M           C+  
Sbjct: 475 FHKM--EMGN-----NPSLFLRLTL--GANQVRDSESLRKLVHDM-----------CQSG 514

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           ++++A +LL  ++  G+ P + TY  L+NG C    ++ A+ LF  +  KG  PD  +Y 
Sbjct: 515 QVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYG 574

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFK---KIFNEM--KLCNVVPETFTCNIFIDGLCK 256
            LI+G  +     +AM + + ++ +G      I+N M   LC +   +   N+++D L K
Sbjct: 575 TLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPK 634



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 29/244 (11%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + +VL A     S I     P + VT+N+LI G C   N+  A +L K++   G  P+  
Sbjct: 513 SGQVLKAYKLLRSIIDSGVVP-DVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEI 571

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T  TLI GL R    N  + L Q ++           P++  Y S++  LC+ + + Q  
Sbjct: 572 TYGTLIDGLLRAHRENDAMMLFQNILQSGS------SPSLSIYNSMMRSLCRMKKLSQAI 625

Query: 121 DLFMEMKDKGIN---ANTLLCKKTKLVE-------ANRLLELMMQRGL---NPVIFTYTP 167
           +L+++   K  N    + +L    K +E          L+++  + G    NP    YT 
Sbjct: 626 NLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGSISSNP----YTI 681

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV-----SRE 222
            L G C V + + A+ +F ++   G        ++LIN  C + N+  A+++     S+ 
Sbjct: 682 WLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNAAVDIMLYALSKS 741

Query: 223 MILN 226
           +IL+
Sbjct: 742 IILS 745


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 161/346 (46%), Gaps = 26/346 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN +I   C EG  + A   +  M  +G +PNV T +T+I G    G      K+ + 
Sbjct: 218 VTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKT 277

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M +         KP+ + Y S I  LCK+R +++   +  ++ + G+  N +        
Sbjct: 278 MKDKN------LKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDG 331

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C K  L +A    + MM RG+   +FTY  L++   L  ++  A  +   M  KG  PD
Sbjct: 332 CCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPD 391

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y++ INGYC+  N ++A++            +F+EM   N+ P   T    ID   K
Sbjct: 392 VVTYNIQINGYCRCGNAKKALS------------LFDEMVEKNIRPTVETYTSLIDVFGK 439

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E  E F           + +FN+LI G C  G  + A +L  ++    +V D V 
Sbjct: 440 RNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVT 499

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +N L+    +E ++++   LL  M+E G   D  ++NTL+  + ++
Sbjct: 500 FNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKR 545



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 26/335 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NS I   C E  I +AS ++ K+   G  PN  T + LI G    G+++       EM
Sbjct: 289 TYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEM 348

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           +N      GI   +VF Y  LI  L  ++ +++ +D+  EM++KG+  + +         
Sbjct: 349 MNR-----GIVA-SVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGY 402

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+     +A  L + M+++ + P + TYT L++ +    +++ A   F    ++G +PD+
Sbjct: 403 CRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDI 462

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             ++ LI+G+C N N++ A             ++  EM    VVP+  T N  + G C+ 
Sbjct: 463 IMFNALIDGHCVNGNIDRAF------------QLLKEMDNAKVVPDEVTFNTLMQGYCRE 510

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V E  +L   ++    +     +N+LI G  K G  + A E+F+++        ++ Y
Sbjct: 511 RKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTY 570

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           N LI    K G+      LL  M+  G   D  T+
Sbjct: 571 NALIQGYSKIGEADHAEELLREMQSKGITPDDSTY 605



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 157/323 (48%), Gaps = 38/323 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL---RRTGNMNLTL 79
           N VT+N++I G+C+ G    AS++ K M     +P+  T ++ I+ L   RR    +  L
Sbjct: 251 NVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVL 310

Query: 80  -KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
            KL   + +G+        PN   Y +LIDG C    +D+      EM ++GI A+    
Sbjct: 311 CKL---LESGLV-------PNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTY 360

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 L  + ++ EA  +++ M ++G+ P + TY   +NGYC  G    A++LFD M  
Sbjct: 361 NLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVE 420

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           K   P V +Y+ LI+ + K   + EA           FKK   E     ++P+    N  
Sbjct: 421 KNIRPTVETYTSLIDVFGKRNRMSEAE--------EKFKKSIKE----GMLPDIIMFNAL 468

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCK 308
           IDG C NG++    +L    E+ N ++  +   FN+L++G C+    E A +L +++  +
Sbjct: 469 IDGHCVNGNIDRAFQLLK--EMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKER 526

Query: 309 NLVADVVAYNILIHALGKEGQIK 331
            +  D ++YN LI    K G +K
Sbjct: 527 GIKPDHISYNTLISGYSKRGDMK 549



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 25/231 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   + +  RP  + T+ SLI  F     + +A +  KK    G  P++   + LI
Sbjct: 411 ALSLFDEMVEKNIRPTVE-TYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALI 469

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G    GN++   +L +EM N          P+   + +L+ G C++R V++ K L  EM
Sbjct: 470 DGHCVNGNIDRAFQLLKEMDNAK------VVPDEVTFNTLMQGYCRERKVEEAKKLLDEM 523

Query: 127 KDKGINA-----NTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K++GI       NTL+    K+  + +A  + + M+  G +P + TY  L+ GY  +G+ 
Sbjct: 524 KERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEA 583

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           + A  L   M  KG  PD  +Y  +I          EAM  + +++ N  K
Sbjct: 584 DHAEELLREMQSKGITPDDSTYLYVI----------EAMKTNDDLVENDDK 624



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 65/126 (51%)

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           ++ EM   N+     T NI I+ LC+ G   +  +    +E+   +  V  +N++I G C
Sbjct: 204 VYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYC 263

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
             G FE AS++F  +  KNL  D   YN  I  L KE +I++ + +L  + E+G   +  
Sbjct: 264 LRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAV 323

Query: 351 TFNTLM 356
           T+N L+
Sbjct: 324 TYNALI 329


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 169/355 (47%), Gaps = 39/355 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+ G C +G   DA ++  +M   G  PNV     L++ L   G ++  ++L 
Sbjct: 206 NRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQL- 264

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG--INANTLLCKK 140
              +  M D G +  P+   Y + + GLCK   V++     + ++D G  +      C  
Sbjct: 265 ---LGSMKDKGCL--PDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLI 319

Query: 141 TKLVEANRLLE------LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L +A R  E       M++R ++P +  YT ++ G    G++  A++  D M +KGF+
Sbjct: 320 DGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFV 379

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD F Y+ ++   C + ++E A  +  EM+ N            N+V ++ T  I I GL
Sbjct: 380 PDTFCYNTVLKVLCDHGDLERAHTLRSEMLQN------------NLVLDSTTQTIMICGL 427

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC------- 307
           CK G V E M++F  +    C+  V  +N+LI G  + G  E A  LF+K+         
Sbjct: 428 CKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLF 487

Query: 308 ------KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                  N V D  +   L+H + + GQ+ K   LL S+ ++G   DV T+NTL+
Sbjct: 488 LRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLI 542



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 147/350 (42%), Gaps = 26/350 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +   F +L+      G   DA Q   +M  F  RP     +T++  L  +G + L L 
Sbjct: 134 PASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALA 193

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------ 134
           L+  MV           PN   Y  L+DGLCK  +      +F EM D+GI  N      
Sbjct: 194 LYNRMV------AAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTV 247

Query: 135 --TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             + LC   K+ EA +LL  M  +G  P   TY   L+G C VG+VN A      +   G
Sbjct: 248 LLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGG 307

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F   +  YS LI+G  +    +E           G+ K   E    N+ P+     I I 
Sbjct: 308 FALGLKGYSCLIDGLFQARRFDEGF---------GYYKTMLER---NISPDVVLYTIMIR 355

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G  + G + + +     ++          +N++++  C  G  E A  L +++   NLV 
Sbjct: 356 GCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVL 415

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           D     I+I  L K G + +   +   M E+GC   V T+N L+  F ++
Sbjct: 416 DSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYRE 465



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 127/300 (42%), Gaps = 41/300 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +  +I+G    G I DA   +  M   G  P+    +T++  L   G++     L  E
Sbjct: 348 VLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSE 407

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+          +  + C      GLCK  LVD+   +F EM + G +   +        
Sbjct: 408 MLQNNLVLDSTTQTIMIC------GLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIF--------------TYTPLLNGYCLVGKVNVAI 182
             ++ +L EA R+L   M+ G NP +F              +   L++  C  G+V  A 
Sbjct: 462 FYREGRLEEA-RMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAY 520

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            L  S+   G +PDV +Y+ LING CK  N            L+G  ++F E++L  + P
Sbjct: 521 KLLRSIIDSGVVPDVVTYNTLINGLCKARN------------LDGAVRLFKELQLKGISP 568

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDGL +     + M LF  +  S     + I+NS++R  C+      A  L+
Sbjct: 569 DEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 123/256 (48%), Gaps = 32/256 (12%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+++K  C  G++  A  L  +M       + TT   +I GL + G ++  +++  EM 
Sbjct: 385 YNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEM- 443

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKG-------INANTL- 136
              G+ G    P V  Y +LIDG  ++  +++ + LF  MEM +         + AN + 
Sbjct: 444 ---GEHGC--DPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVC 498

Query: 137 -----------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
                      +C+  ++++A +LL  ++  G+ P + TY  L+NG C    ++ A+ LF
Sbjct: 499 DSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLF 558

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---KIFNEM--KLCNV 240
             +  KG  PD  +Y  LI+G  +     +AM + + ++ +G      I+N M   LC +
Sbjct: 559 KELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRM 618

Query: 241 VPETFTCNIFIDGLCK 256
              +   N+++D L K
Sbjct: 619 KKLSQAINLWLDYLPK 634



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 160/405 (39%), Gaps = 74/405 (18%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   + R   P N   +  L+   C  G I +A QL+  M   GC P+  T +  +
Sbjct: 226 ALKMFDEMLDRGIMP-NVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFL 284

Query: 67  TGLRRTGNMN---------------LTLKLHQEMVNGMG-----DFG-GIYK-------- 97
           +GL + G +N               L LK +  +++G+      D G G YK        
Sbjct: 285 SGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNIS 344

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRL 149
           P+V  Y  +I G  +   ++        MK KG   +T        +LC    L  A+ L
Sbjct: 345 PDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTL 404

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              M+Q  L     T T ++ G C  G V+ A+ +FD M   G  P V +Y+ LI+G+ +
Sbjct: 405 RSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYR 464

Query: 210 NFNVEEAMNVSREMIL--------------------NGFKKIFNEM----------KL-- 237
              +EEA  +  +M +                       +K+ ++M          KL  
Sbjct: 465 EGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLR 524

Query: 238 ----CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                 VVP+  T N  I+GLCK  ++   + LF  L++         + +LI G  +  
Sbjct: 525 SIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAH 584

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
               A  LF  +        +  YN ++ +L +  ++ +   L L
Sbjct: 585 RENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWL 629



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 29/244 (11%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + +VL A     S I     P + VT+N+LI G C   N+  A +L K++   G  P+  
Sbjct: 513 SGQVLKAYKLLRSIIDSGVVP-DVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEI 571

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T  TLI GL R    N  + L Q ++           P++  Y S++  LC+ + + Q  
Sbjct: 572 TYGTLIDGLLRAHRENDAMMLFQNILQSGS------SPSLSIYNSMMRSLCRMKKLSQAI 625

Query: 121 DLFMEMKDKGIN---ANTLLCKKTKLVE-------ANRLLELMMQRGL---NPVIFTYTP 167
           +L+++   K  N    + +L    K +E          L+++  + G    NP    YT 
Sbjct: 626 NLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGYISSNP----YTI 681

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV-----SRE 222
            L G C V + + A+ +F ++   G        ++LIN  C + N+  A+++     S+ 
Sbjct: 682 WLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNAAVDIMLYALSKS 741

Query: 223 MILN 226
           +IL+
Sbjct: 742 IILS 745


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 178/399 (44%), Gaps = 71/399 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+++LI G C  G++     L+++M      PNV    +++ G  + G +N  + + 
Sbjct: 226 NCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVM 285

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MV           PNVF YG+LIDG  K        DLF EMK +G+  N        
Sbjct: 286 RKMVQRN------ILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFV 339

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L +  ++ EA+ L + MM RGL P    YT +++G+   GK + A  +   M  K   
Sbjct: 340 NNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSG 399

Query: 195 PDVFSYSVLINGYCK--NFNVEEAMNVSREM-----------ILNGF---------KKIF 232
            DV +Y+VLING  K   +  E      R++           ++N +          K+ 
Sbjct: 400 FDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLL 459

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF---------PT-------LEISN-- 274
           NEMK   + P + TCNI +  LC  G + + M+L          PT       L+ S+  
Sbjct: 460 NEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKS 519

Query: 275 -----------------CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
                             +L +  +N+LI   C+ G+   A+ +F  +  K ++AD++ Y
Sbjct: 520 RRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITY 579

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N LIH       +KK   +   M   G + +V+T+N L+
Sbjct: 580 NALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILL 618



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 189/412 (45%), Gaps = 86/412 (20%)

Query: 21  PLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           P  D VT+N+L+ GFC  G++  A +L+ +++     PNV T  TLI    ++  +   L
Sbjct: 48  PAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDAL 107

Query: 80  KLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
            ++ EM V  +        P+V  Y  +++GLCK   V++ K +F EM++ G+  N    
Sbjct: 108 YMYDEMTVKSL-------VPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSY 160

Query: 137 ------LCKKTKLVEA-----------------------------------NRLLELMMQ 155
                 L K+  + EA                                     + +++++
Sbjct: 161 ATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLE 220

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
             L P   TY+ L++G+C +G VN    L   M  K   P+V  YS +++GY K   + E
Sbjct: 221 ESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNE 280

Query: 216 AMNVSREMI--------------LNGFKK---------IFNEMKLCNVVPETFTCNIFID 252
           AM+V R+M+              ++G+ K         +F EMK   +    F  + F++
Sbjct: 281 AMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVN 340

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKFG----IFEIASELFNKLSC 307
            L ++G + E  ELF  + +S   L   + + S++ G  K G     F IA E+  K S 
Sbjct: 341 NLKRSGRMEEADELFKDM-MSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSG 399

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
                DVVAYN+LI+ L K G+ + E++    M + G A D  TFNT++ ++
Sbjct: 400 ----FDVVAYNVLINGLFKLGKYESESF-HTGMRQLGLAPDSATFNTMINAY 446



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 135/274 (49%), Gaps = 20/274 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANR 148
           + +V  +  LIDG C++  + +  +L   MK +G     +  NTL+   CK   L  A +
Sbjct: 14  RRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKK 73

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L+  +    L P + TYT L++ YC    +  A+ ++D M  K  +PDV +Y+ ++NG C
Sbjct: 74  LMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLC 133

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K+  VEEA            K +F EM+   VVP  F+    ID L K G+V E   L  
Sbjct: 134 KSGKVEEA------------KSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQG 181

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            + +      V ++ +L+ G  K G+   A ++F  L  ++LV + V Y+ LI    K G
Sbjct: 182 RMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLG 241

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            + K   LL  MEE     +V  +++++  + +K
Sbjct: 242 DVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKK 275



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 165/397 (41%), Gaps = 74/397 (18%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN LI G+C  G I  A +L++ M T G  P++ T +TL+ G  + G++    KL     
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKL----- 74

Query: 87  NGMGDFGGI-YKPNVFCYGSLID-----------------------------------GL 110
             MG+   +  +PNV  Y +LID                                   GL
Sbjct: 75  --MGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 111 CKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVI 162
           CK   V++ K +F EM++ G+  N          L K+  + EA  L   M+ RG+   +
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDV 192

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
             YT L++G    G  N A  +F  +  +  +P+  +YS LI+G+CK  +V +   + +E
Sbjct: 193 VVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQE 252

Query: 223 M--------------ILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           M              I++G+ K         +  +M   N++P  F     IDG  K   
Sbjct: 253 MEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQ 312

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
               ++LF  ++    E    + +S +    + G  E A ELF  +  + L+ D V Y  
Sbjct: 313 RGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTS 372

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++    K G+      +   M E     DV  +N L+
Sbjct: 373 MMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLI 409



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 157/352 (44%), Gaps = 45/352 (12%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           +F + +R+     +  TFN++I  +C EGN+ +A +L+ +M ++G +PN  TC+ L+  L
Sbjct: 422 SFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRL 481

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
              G +  T+ L  +M+  MG     + P    + +++D   K R  D    + + M D+
Sbjct: 482 CAAGEIEKTMDLLNDMLV-MG-----FHPTPTTHKAVLDASSKSRRAD----VILHMHDQ 531

Query: 130 GINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                                  ++  G+   + TY  L++ +C +G +  A  +F  M 
Sbjct: 532 -----------------------LVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMM 568

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
            KG + D+ +Y+ LI+GYC + ++++A  V  +M+  G            V P   T NI
Sbjct: 569 GKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEG------------VSPNVETYNI 616

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            + GL     + E   L   ++          ++ L+ G  K G  +   +L+ ++  K 
Sbjct: 617 LLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKG 676

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            V     YN+LI    K  ++ +   L+  M+  G   +  T++ L+  + +
Sbjct: 677 FVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYK 728



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 150/359 (41%), Gaps = 28/359 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   + R   P + V + S++ GF   G   DA  + ++M       +V   + LI GL 
Sbjct: 355 FKDMMSRGLLP-DRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLF 413

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G         +    GM   G    P+   + ++I+  CK+  +     L  EMK  G
Sbjct: 414 KLGKYE-----SESFHTGMRQLG--LAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYG 466

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           +  N++        LC   ++ +   LL  M+  G +P   T+  +L+      + +V +
Sbjct: 467 LKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVIL 526

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            + D +   G   D+ +Y+ LI+ +C+   +  A  V ++M+  G            ++ 
Sbjct: 527 HMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKG------------ILA 574

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T N  I G C + H+ +   +   +        VE +N L+ G     + + A+ L 
Sbjct: 575 DIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLV 634

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           N++  + LV +   Y+IL+   GK G +K+   L   M   G      T+N L+  F +
Sbjct: 635 NQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAK 693



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 26/155 (16%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N L+ G      I++A+ LV +M   G  PN TT D L++G  + GNM   +KL+ EM
Sbjct: 613 TYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEM 672

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-----LLC-- 138
           +         + P    Y  LI    K + + Q K+L  EM+ +GI  N+     L+C  
Sbjct: 673 ITKG------FVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGW 726

Query: 139 -------------KKTKLVEANRLLELMMQRGLNP 160
                        K++   EA RL E M ++G  P
Sbjct: 727 YKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 178/399 (44%), Gaps = 71/399 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+++LI G C  G++     L+++M      PNV    +++ G  + G +N  + + 
Sbjct: 226 NCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVM 285

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++MV           PNVF YG+LIDG  K        DLF EMK +G+  N        
Sbjct: 286 RKMVQRN------ILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFV 339

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L +  ++ EA+ L + MM RGL P    YT +++G+   GK + A  +   M  K   
Sbjct: 340 NNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSG 399

Query: 195 PDVFSYSVLINGYCK--NFNVEEAMNVSREM-----------ILNGF---------KKIF 232
            DV +Y+VLING  K   +  E      R++           ++N +          K+ 
Sbjct: 400 FDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLL 459

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF---------PT-------LEISN-- 274
           NEMK   + P + TCNI +  LC  G + + M+L          PT       L+ S+  
Sbjct: 460 NEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKS 519

Query: 275 -----------------CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
                             +L +  +N+LI   C+ G+   A+ +F  +  K ++AD++ Y
Sbjct: 520 RRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITY 579

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N LIH       +KK   +   M   G + +V+T+N L+
Sbjct: 580 NALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILL 618



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 189/412 (45%), Gaps = 86/412 (20%)

Query: 21  PLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           P  D VT+N+L+ GFC  G++  A +L+ +++     PNV T  TLI    ++  +   L
Sbjct: 48  PAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDAL 107

Query: 80  KLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
            ++ EM V  +        P+V  Y  +++GLCK   V++ K +F EM++ G+  N    
Sbjct: 108 YMYDEMTVKSL-------VPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSY 160

Query: 137 ------LCKKTKLVEA-----------------------------------NRLLELMMQ 155
                 L K+  + EA                                     + +++++
Sbjct: 161 ATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLE 220

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
             L P   TY+ L++G+C +G VN    L   M  K   P+V  YS +++GY K   + E
Sbjct: 221 ESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNE 280

Query: 216 AMNVSREMI--------------LNGFKK---------IFNEMKLCNVVPETFTCNIFID 252
           AM+V R+M+              ++G+ K         +F EMK   +    F  + F++
Sbjct: 281 AMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVN 340

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKFG----IFEIASELFNKLSC 307
            L ++G + E  ELF  + +S   L   + + S++ G  K G     F IA E+  K S 
Sbjct: 341 NLKRSGRMEEADELFKDM-MSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSG 399

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
                DVVAYN+LI+ L K G+ + E++    M + G A D  TFNT++ ++
Sbjct: 400 ----FDVVAYNVLINGLFKLGKYESESF-HTGMRQLGLAPDSATFNTMINAY 446



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 135/274 (49%), Gaps = 20/274 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANR 148
           + +V  +  LIDG C++  + +  +L   MK +G     +  NTL+   CK   L  A +
Sbjct: 14  RRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKK 73

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L+  +    L P + TYT L++ YC    +  A+ ++D M  K  +PDV +Y+ ++NG C
Sbjct: 74  LMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLC 133

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K+  VEEA            K +F EM+   VVP  F+    ID L K G+V E   L  
Sbjct: 134 KSGKVEEA------------KSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQG 181

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            + +      V ++ +L+ G  K G+   A ++F  L  ++LV + V Y+ LI    K G
Sbjct: 182 RMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLG 241

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            + K   LL  MEE     +V  +++++  + +K
Sbjct: 242 DVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKK 275



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 165/397 (41%), Gaps = 74/397 (18%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           FN LI G+C  G I  A +L++ M T G  P++ T +TL+ G  + G++    KL     
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKL----- 74

Query: 87  NGMGDFGGI-YKPNVFCYGSLID-----------------------------------GL 110
             MG+   +  +PNV  Y +LID                                   GL
Sbjct: 75  --MGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 111 CKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVI 162
           CK   V++ K +F EM++ G+  N          L K+  + EA  L   M+ RG+   +
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDV 192

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
             YT L++G    G  N A  +F  +  +  +P+  +YS LI+G+CK  +V +   + +E
Sbjct: 193 VVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQE 252

Query: 223 M--------------ILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           M              I++G+ K         +  +M   N++P  F     IDG  K   
Sbjct: 253 MEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQ 312

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
               ++LF  ++    E    + +S +    + G  E A ELF  +  + L+ D V Y  
Sbjct: 313 RGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTS 372

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++    K G+      +   M E     DV  +N L+
Sbjct: 373 MMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLI 409



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 157/352 (44%), Gaps = 45/352 (12%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           +F + +R+     +  TFN++I  +C EGN+ +A +L+ +M ++G +PN  TC+ L+  L
Sbjct: 422 SFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRL 481

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
              G +  T+ L  +M+  MG     + P    + +++D   K R  D    + + M D+
Sbjct: 482 CAAGEIEKTMDLLNDMLV-MG-----FHPTPTTHKAVLDASSKSRRAD----VILHMHDQ 531

Query: 130 GINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                                  ++  G+   + TY  L++ +C +G +  A  +F  M 
Sbjct: 532 -----------------------LVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMM 568

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
            KG + D+ +Y+ LI+GYC + ++++A  V  +M+  G            V P   T NI
Sbjct: 569 GKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEG------------VSPNVETYNI 616

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            + GL     + E   L   ++          ++ L+ G  K G  +   +L+ ++  K 
Sbjct: 617 LLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKG 676

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            V     YN+LI    K  ++ +   L+  M+  G   +  T++ L+  + +
Sbjct: 677 FVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYK 728



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 150/359 (41%), Gaps = 28/359 (7%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   + R   P + V + S++ GF   G   DA  + ++M       +V   + LI GL 
Sbjct: 355 FKDMMSRGLLP-DRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLF 413

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G         +    GM   G    P+   + ++I+  CK+  +     L  EMK  G
Sbjct: 414 KLGKYE-----SESFHTGMRQLG--LAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYG 466

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           +  N++        LC   ++ +   LL  M+  G +P   T+  +L+      + +V +
Sbjct: 467 LKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVIL 526

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            + D +   G   D+ +Y+ LI+ +C+   +  A  V ++M+  G            ++ 
Sbjct: 527 HMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKG------------ILA 574

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T N  I G C + H+ +   +   +        VE +N L+ G     + + A+ L 
Sbjct: 575 DIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLV 634

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           N++  + LV +   Y+IL+   GK G +K+   L   M   G      T+N L+  F +
Sbjct: 635 NQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAK 693



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 26/155 (16%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N L+ G      I++A+ LV +M   G  PN TT D L++G  + GNM   +KL+ EM
Sbjct: 613 TYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEM 672

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-----LLC-- 138
           +         + P    Y  LI    K + + Q K+L  EM+ +GI  N+     L+C  
Sbjct: 673 ITKG------FVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGW 726

Query: 139 -------------KKTKLVEANRLLELMMQRGLNP 160
                        K++   EA RL E M ++G  P
Sbjct: 727 YKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 26/191 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N+LI G+C+  +++ A  +  +M T G  PNV T + L+ GL         +K    
Sbjct: 577 ITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAA----RLIKEAAG 632

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +VN M + G +  PN   Y  L+ G  K   + +   L+ EM  KG    T         
Sbjct: 633 LVNQMKERGLV--PNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISC 690

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK------------VNVAIAL 184
             K  K+ +A  L++ M  RG+ P   TY  L+ G+  + K               A  L
Sbjct: 691 FAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRL 750

Query: 185 FDSMARKGFMP 195
           F+ M  KGF+P
Sbjct: 751 FEEMNEKGFIP 761


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 170/364 (46%), Gaps = 33/364 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL +F S  R    P N VTF  LI G+C  G++  A  L K+M       NV T   LI
Sbjct: 182 ALKSFHSMKRDALSP-NVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALI 240

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G M    +++  MV          +PN   Y ++IDG  +    D       +M
Sbjct: 241 DGFCKKGEMQRAEEMYSRMVEDR------VEPNSLVYTTIIDGFFQRGDSDNAMKFLAKM 294

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            ++G+  +          LC   KL EA  ++E M +  L P +  +T ++N Y   G++
Sbjct: 295 LNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRM 354

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKN---------FNVEEAMNVSREMILNGF- 228
             A+ ++  +  +GF PDV + S +I+G  KN         F +E+A +V   ++++   
Sbjct: 355 KAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKANDVMYTVLIDALC 414

Query: 229 --------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                   +++F+++    +VP+ F    +I GLCK G++++  +L   +      L + 
Sbjct: 415 KEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLL 474

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            + +LI G    G+   A ++F+++    +  D   +++LI A  KEG +   + LLL M
Sbjct: 475 AYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAASDLLLDM 534

Query: 341 EENG 344
           +  G
Sbjct: 535 QRRG 538



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 166/351 (47%), Gaps = 25/351 (7%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            + R Y P +  +FNS++   C  G ++ A  +V  M  FGC P+V + ++LI G  R G
Sbjct: 47  LVSRGYTP-HRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNG 105

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
           ++     + + +       G I KP++  + SL +G  K +++D+   ++M +  K  + 
Sbjct: 106 DIRSASLVLESL---RASHGFICKPDIVSFNSLFNGFSKMKMLDEVF-VYMGVMLKCCSP 161

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           N +         CK  +L  A +    M +  L+P + T+T L++GYC  G + VA++L+
Sbjct: 162 NVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLY 221

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             M R     +V +Y+ LI+G+CK   ++ A            +++++ M    V P + 
Sbjct: 222 KEMRRVRMSLNVVTYTALIDGFCKKGEMQRA------------EEMYSRMVEDRVEPNSL 269

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
                IDG  + G     M+    +      L +  +  +I G C  G  + A+E+   +
Sbjct: 270 VYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDM 329

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              +LV D+V +  +++A  K G++K    +   + E G   DV   +T++
Sbjct: 330 EKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMI 380



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 170/368 (46%), Gaps = 32/368 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+L  +  +   + +C  P N VT+++ I  FC  G ++ A +    M      PNV T 
Sbjct: 143 KMLDEVFVYMGVMLKCCSP-NVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTF 201

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI G  + G++ + + L++EM             NV  Y +LIDG CK   + + +++
Sbjct: 202 TCLIDGYCKAGDLEVAVSLYKEMRRVRMSL------NVVTYTALIDGFCKKGEMQRAEEM 255

Query: 123 FMEMKDKGINANTLLC--------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           +  M +  +  N+L+         ++     A + L  M+ +G+   I  Y  +++G C 
Sbjct: 256 YSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCG 315

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            GK+  A  + + M +   +PD+  ++ ++N Y K+  ++ A+N+  ++I  GF+     
Sbjct: 316 NGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFE----- 370

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                  P+    +  IDG+ KNG + E +  F  +E +N  ++  + ++L    CK G 
Sbjct: 371 -------PDVVALSTMIDGIAKNGQLHEAIVYF-CIEKANDVMYTVLIDAL----CKEGD 418

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           F     LF+K+S   LV D   Y   I  L K+G +     L   M + G  LD+  + T
Sbjct: 419 FIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTT 478

Query: 355 LMISFLQK 362
           L+     K
Sbjct: 479 LIYGLASK 486



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 25/240 (10%)

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           + L  ++ RG  P   ++  +++  C +G+V  A  +  SM R G  PDV SY+ LI+G+
Sbjct: 42  KFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGH 101

Query: 208 CKNFNVE------EAMNVSREMI----LNGFKKIFN---EMKLCNVV------------P 242
           C+N ++       E++  S   I    +  F  +FN   +MK+ + V            P
Sbjct: 102 CRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSP 161

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              T + +ID  CK+G +   ++ F +++       V  F  LI G CK G  E+A  L+
Sbjct: 162 NVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLY 221

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            ++    +  +VV Y  LI    K+G++++   +   M E+    +   + T++  F Q+
Sbjct: 222 KEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQR 281


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 159/342 (46%), Gaps = 45/342 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EG +R A  +   +  +G RP+V + 
Sbjct: 115 KYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSF 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  + G+++   +L     N M   G   +P+V+ Y  LI+GLCK+  +D     
Sbjct: 175 NTLMNGYIKLGDLDEGFRLK----NAMRASG--VQPDVYTYSVLINGLCKESRMD----- 223

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                                 EAN L   M+  GL P   T+T L++G+C  G++++A+
Sbjct: 224 ----------------------EANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAM 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +GF PDV +Y+ LI G CK  ++++A  +  EM   G K            P
Sbjct: 262 DIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLK------------P 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    EL   +   +  L   ++ +LI G C+ G    A ++ 
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKML 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            ++    L  D   Y ++++   K+G +KK + LL  M+ NG
Sbjct: 370 REMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNG 411



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 154/344 (44%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G IRDA +  +       R    TC  ++  L +     L    ++E++
Sbjct: 69  FSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L E  RL   M   G+ P ++TY+ L+NG C   +++ A  LF  M   G +P+  
Sbjct: 183 KLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  ++ AM++ R+M+  GF             P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGRLDLAMDIYRQMLNQGFS------------PDVVTYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   +     +     + +LI G CK G  E A EL  ++  +++  D V Y 
Sbjct: 291 DLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D +T+  +M  F +K
Sbjct: 351 ALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKK 394



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 14/181 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A  + ++M   G  P+V T +TLI GL + G++     L 
Sbjct: 240 NGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLL 299

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM        G+ KP+   Y +LIDG CK+  ++   +L   M  + I  + +      
Sbjct: 300 DEMSRK-----GL-KPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALI 353

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M++ GL P   TYT ++N +C  G V  A  L   M R G +
Sbjct: 354 FGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRV 413

Query: 195 P 195
           P
Sbjct: 414 P 414



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 103/255 (40%), Gaps = 23/255 (9%)

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPV- 161
           Y ++I  LC       T  +F+E K       T++ +K K   +     ++  +G     
Sbjct: 16  YCTMIHFLC-------THQMFLEAKSL---IQTVVSRKGKDSASAVFAAILETKGTQRSD 65

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           I+ ++ L+  Y   G +  AI  F    +  F     +        C+N  +E  M    
Sbjct: 66  IYVFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDT--------CRNV-LEHLMKXKY 116

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
             ++ GF   + E+  C      +  NI +   CK G +     +F  +        V  
Sbjct: 117 FKLVWGF---YKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVS 173

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           FN+L+ G  K G  +    L N +    +  DV  Y++LI+ L KE ++ + N L   M 
Sbjct: 174 FNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEML 233

Query: 342 ENGCALDVDTFNTLM 356
           +NG   +  TF TL+
Sbjct: 234 DNGLVPNGVTFTTLI 248


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 165/344 (47%), Gaps = 28/344 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V + +++ GF  E    +A +L   M   G  P+V+T + L+  L + G +  + +L
Sbjct: 179 LNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERL 238

Query: 82  HQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NT 135
             +++  GM         N+F +   I GLC+  ++     +   +  +G+       NT
Sbjct: 239 LNKVLKKGMCS-------NLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNT 291

Query: 136 L---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L   LCK + +VEA + L  ++  GL P  FTY  L++GYC +G +  A  +      KG
Sbjct: 292 LICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKG 351

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F+PD F+Y  LING C+N  ++ A+ +    +  G K            P     N+ I 
Sbjct: 352 FVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLK------------PTVILYNMLIK 399

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLC+ G +L+ +++   +  + C   +  +N +I G CK G    A+ L N    K  V 
Sbjct: 400 GLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVP 459

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           DV  +N LI    K+ +++    +L  M  +G   DV T+N+++
Sbjct: 460 DVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVL 503



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 170/392 (43%), Gaps = 51/392 (13%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GA+    S IR    P + VT+N+LI G C   N+ +A + + K+   G  P+  T +TL
Sbjct: 269 GAMSMLDSVIREGLTP-DVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTL 327

Query: 66  ITGLRRTGNMNLTLKLHQ---------------EMVNGM--------------GDFGGIY 96
           I G  + G +    K+ Q                ++NG+                 G   
Sbjct: 328 IDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGL 387

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           KP V  Y  LI GLC++ L+ Q   +  EM + G +++          LCK   + +AN 
Sbjct: 388 KPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANN 447

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L+   + +G  P +FT+  L++GYC   K+   I + + M   G  PDV +Y+ ++NG  
Sbjct: 448 LMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLS 507

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K    E+ M     M+  G             VP   T NI  + LCK G V E ++L  
Sbjct: 508 KAVKNEDLMETFETMVEKG------------CVPNKITYNILTESLCKAGKVNEALDLVD 555

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA-YNILIHALGKE 327
            +           F ++I G    G  + A +LF ++  +  V+   A YNI+I+A  ++
Sbjct: 556 EILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEK 615

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             +     L L M   GCA D  T+  ++  F
Sbjct: 616 LDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGF 647



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 160/345 (46%), Gaps = 26/345 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF   IK FC       A +L+  M + GC+ N     T++ G           +L  +M
Sbjct: 148 TFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDM 207

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           +  +G F     P+V  +  L+  LCK   V +++ L  ++  KG+ +N          L
Sbjct: 208 LR-IGIF-----PDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGL 261

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+K  L  A  +L+ +++ GL P + TY  L+ G C    V  A      +   G  PD 
Sbjct: 262 CRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDG 321

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           F+Y+ LI+GYCK   ++ A  + +  I  GF            VP+ FT    I+GLC+N
Sbjct: 322 FTYNTLIDGYCKMGMLQNAEKILQGAICKGF------------VPDEFTYCSLINGLCQN 369

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             +   + LF        +  V ++N LI+G C+ G+   A ++ N++S     +D+  Y
Sbjct: 370 DEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTY 429

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N++I+ L K G +   N L+      G   DV TFNTL+  + ++
Sbjct: 430 NLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQ 474



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 173/367 (47%), Gaps = 57/367 (15%)

Query: 31  IKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMG 90
           +K +  +G +++A  + ++M  + C P+V + + ++  L  +G      K+   M N +G
Sbjct: 83  MKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKN-VG 141

Query: 91  DFGGIY-------------KP-----------------NVFCYGSLIDGLCKDRLVDQTK 120
               +Y             +P                 N   Y +++ G  ++    +  
Sbjct: 142 IVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAY 201

Query: 121 DLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +LF +M   GI  +          LCKK ++ E+ RLL  ++++G+   +FT+   + G 
Sbjct: 202 ELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGL 261

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  G ++ A+++ DS+ R+G  PDV +Y+ LI G CKN NV EA     +++  G +   
Sbjct: 262 CRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLE--- 318

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE---IFNSLIRGC 289
                    P+ FT N  IDG CK G +    ++   L+ + C+ FV     + SLI G 
Sbjct: 319 ---------PDGFTYNTLIDGYCKMGMLQNAEKI---LQGAICKGFVPDEFTYCSLINGL 366

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C+    + A  LFN    K L   V+ YN+LI  L +EG I +   ++  M ENGC+ D+
Sbjct: 367 CQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDI 426

Query: 350 DTFNTLM 356
            T+N ++
Sbjct: 427 WTYNLVI 433



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 162/351 (46%), Gaps = 26/351 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F + + +  +P   + +N LIKG C EG I  A Q++ +M+  GC  ++ T + +I
Sbjct: 375 ALALFNAALGKGLKP-TVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVI 433

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G ++    L  + +         Y P+VF + +LIDG CK   ++ T  +  +M
Sbjct: 434 NGLCKMGCVSDANNLMNDAI------AKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKM 487

Query: 127 KDKG-----INANTLLCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G     I  N++L   +K V+   L+E    M+++G  P   TY  L    C  GKV
Sbjct: 488 WSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKV 547

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           N A+ L D +  KG  PD  S++ +I+G+  N +++ A  +        F+++  + K+ 
Sbjct: 548 NEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQL--------FRRMGEQYKVS 599

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
           +    T T NI I+   +   +    +LF  +    C      +  +I G C  G  +  
Sbjct: 600 HT---TATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSG 656

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
            +   ++  K  +  +  +  +I+ L  + ++ +   ++  M  NG   +V
Sbjct: 657 YKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPEV 707



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 12/198 (6%)

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y   +  Y   GKV  A+ +F+ M      P V SY+ ++N   ++   ++A        
Sbjct: 79  YIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQA-------- 130

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                K+F  MK   +VP+ +T  I I   C+       + L   +    C+L    + +
Sbjct: 131 ----HKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCT 186

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           ++ G  +      A ELFN +    +  DV  +N L+H L K+G++++   LL  + + G
Sbjct: 187 VVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKG 246

Query: 345 CALDVDTFNTLMISFLQK 362
              ++ TFN  +    +K
Sbjct: 247 MCSNLFTFNIFIQGLCRK 264


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 179/387 (46%), Gaps = 41/387 (10%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           AF S +RR   P +  TFN++I G C  G +R A  + K +  +G  P+V T ++LI G 
Sbjct: 178 AFRSALRRRVSP-DIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGY 236

Query: 70  RR---TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            +    GNM     L +EMV       GI  P    +G LI+G CK+        +F EM
Sbjct: 237 CKKGGAGNMYHVDMLLKEMVEA-----GI-SPTAVTFGVLINGYCKNSNTAAAVRVFEEM 290

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K +GI A+ +        LC + K+ E  +L+E M   GL+P   T+  +L G+C  G +
Sbjct: 291 KQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMM 350

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
             A    D M  +   PDV  Y++LI+ Y +   +E+AM V   M              +
Sbjct: 351 ADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCL 410

Query: 225 LNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           + GF +         + +EMK   +  +  T N+ I  LC  G V + ++L   +     
Sbjct: 411 ITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGL 470

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           E     +N++I+G C  G  + A E+  ++      A+VV YN+ I    + G++ + N 
Sbjct: 471 EPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAND 530

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQK 362
           LL  M +     +  T+ T+    ++K
Sbjct: 531 LLNEMLDKCLVPNGITYETIKEGMMEK 557



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 32/366 (8%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           L+A  S  R  +RP +  + N+L+ G      +  A +  +        P++ T +T+I+
Sbjct: 143 LLAGESHPR--HRP-STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVIS 199

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD---QTKDLFM 124
           GL R G     L+   ++   +  +G    P+V  Y SLIDG CK            L  
Sbjct: 200 GLCRIGQ----LRKAGDVAKDIKAWG--LAPSVATYNSLIDGYCKKGGAGNMYHVDMLLK 253

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           EM + GI+   +         CK +    A R+ E M Q+G+   + TY  L++G C  G
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEG 313

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           KV   + L + M   G  P+  ++  ++ G+CK   + +A +              + M 
Sbjct: 314 KVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADAND------------WIDGMT 361

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
             NV P+    NI ID   + G + + M +   +        V  +N LI G  + G + 
Sbjct: 362 ERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWR 421

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            AS L +++  K + ADVV YN+LI AL  +G+++K   LL  M E G   +  T+NT++
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 357 ISFLQK 362
             F  K
Sbjct: 482 QGFCDK 487


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 162/366 (44%), Gaps = 35/366 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+ G C  G +  A  L   M   G  P+  T  TLI    +         L Q 
Sbjct: 77  VTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQL 136

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M +          P V+ Y S+I+GLCK+R VDQ   LF EMK  G     +  NTL   
Sbjct: 137 MASRKCS------PTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHG 190

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC K +L EA  LL +M++    P   T+T L+ G C   ++  A  LF  MA++G  PD
Sbjct: 191 LCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPD 250

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSR------EMIL------------NGF---KKIFNEM 235
           + +++VL++  C    +  A++V R      E ++             GF    ++  +M
Sbjct: 251 LVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKM 310

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               V P   T   F  GL      +     F  +     E  +  +N L+ G CK    
Sbjct: 311 ARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRL 370

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           ++A ++   +    L  ++V YN L+    ++G+++    LL +M   G   DV T++TL
Sbjct: 371 DMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTL 430

Query: 356 MISFLQ 361
           +    +
Sbjct: 431 VAGLFR 436



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 146/342 (42%), Gaps = 34/342 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++  L+K  C  G I  A   + +MA     P+V T + +I  L +   ++  ++  
Sbjct: 9   NALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFF 68

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M           +P+V  Y +L+ GLCK+  V Q   LF  M+  GI  + +      
Sbjct: 69  ETMP----------EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLI 118

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  +   A  LL+LM  R  +P +++Y  ++NG C   KV+ A  LF+ M   G  
Sbjct: 119 DVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCK 178

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +Y+ LI+G C    + EA ++   M+ N F+            P+  T    I+GL
Sbjct: 179 PDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQ------------PDKITFTALIEGL 226

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLI-RGCCKFGIFEIASELFNKLSCKNLVAD 313
           C    + E   LF  +    C   +     L+ + C +  +    S + N  +C      
Sbjct: 227 CTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEA--- 283

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           V+ Y  +   LG+     +   LL  M   G A +V T+   
Sbjct: 284 VILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAF 325



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 124/274 (45%), Gaps = 22/274 (8%)

Query: 55  CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR 114
           C+PN  +   L+  L RTG ++       EM            P+VF Y  +ID LCK R
Sbjct: 6   CKPNALSYCYLVKALCRTGKIDKACSTIAEMAREK------LVPDVFTYNVVIDTLCKAR 59

Query: 115 LVDQTKDLFMEMKDKG-INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
            + +  + F  M +   +  NTL   LCK  ++ +A  L   M   G+ P   TYT L++
Sbjct: 60  RISRAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLID 119

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
            +C + +   A  L   MA +   P V+SY  +ING CKN  V++A             +
Sbjct: 120 VFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAY------------Q 167

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F EMKL    P+  T N  I GLC    + E  +L   +  ++ +     F +LI G C
Sbjct: 168 LFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLC 227

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                + A  LF  ++ +    D+V + +L+  L
Sbjct: 228 TTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKL 261



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 162/382 (42%), Gaps = 61/382 (15%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V  A   FGS       P +DVT+ +LI  FC       A  L++ MA+  C P V + 
Sbjct: 91  RVAQACSLFGSMEGAGITP-SDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSY 149

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            ++I GL +   ++   +L +EM        G  KP+   Y +LI GLC  + + + KDL
Sbjct: 150 CSIINGLCKNRKVDQAYQLFEEM-----KLAGC-KPDRVTYNTLIHGLCVKQRLHEAKDL 203

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
              M +     + +        LC   ++ EA  L + M ++G  P + T+T L++  C+
Sbjct: 204 LTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCI 263

Query: 175 VGKVNVAIA---------------------------------LFDSMARKGFMPDVFSYS 201
             K+  A++                                 L   MAR+G  P+V +Y+
Sbjct: 264 RRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYT 323

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
               G     + +E M   RE     F+++  +     + P+    N+ +DG CK   + 
Sbjct: 324 AFFKGL---GDWKEGMRAYRE-----FRRMLEQ----GIEPDMVAYNVLVDGFCKANRLD 371

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
              ++   ++ S     +  +N+L+   C+ G  E   EL + +  +    DV  ++ L+
Sbjct: 372 MAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLV 431

Query: 322 HALGKEGQIKKE-NYLLLSMEE 342
             L + GQ+    ++L L+M +
Sbjct: 432 AGLFRVGQVDAAYSFLNLAMSQ 453



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 121/272 (44%), Gaps = 25/272 (9%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           KPN   Y  L+  LC+   +D+      EM  + +  +          LCK  ++  A  
Sbjct: 7   KPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIE 66

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
             E M +    P + TY  LL G C  G+V  A +LF SM   G  P   +Y+ LI+ +C
Sbjct: 67  FFETMPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFC 122

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K    E A  + + M            + C+  P  ++    I+GLCKN  V +  +LF 
Sbjct: 123 KMCQFETAYGLLQLM----------ASRKCS--PTVYSYCSIINGLCKNRKVDQAYQLFE 170

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            ++++ C+     +N+LI G C       A +L   +   +   D + +  LI  L    
Sbjct: 171 EMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTD 230

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           +IK+   L   M + GCA D+ T +T+++S L
Sbjct: 231 RIKEAFVLFQGMAKQGCAPDLVT-HTVLVSKL 261



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 16/205 (7%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P   +Y  L+   C  GK++ A +    MAR+  +PDVF+Y+V+I+  CK      A  
Sbjct: 7   KPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCK------ARR 60

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           +SR +      + F  M      P+  T N  + GLCKNG V +   LF ++E +     
Sbjct: 61  ISRAI------EFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPS 110

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
              + +LI   CK   FE A  L   ++ +     V +Y  +I+ L K  ++ +   L  
Sbjct: 111 DVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFE 170

Query: 339 SMEENGCALDVDTFNTLMISFLQKE 363
            M+  GC  D  T+NTL+     K+
Sbjct: 171 EMKLAGCKPDRVTYNTLIHGLCVKQ 195



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 14/158 (8%)

Query: 43  ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102
           A++L++KMA  G  PNV T      GL   G+    ++ ++E    +    GI +P++  
Sbjct: 303 AARLLQKMARRGVAPNVVTYTAFFKGL---GDWKEGMRAYREFRRMLEQ--GI-EPDMVA 356

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMM 154
           Y  L+DG CK   +D  + +   M   G     +  NTL+   C+K K+     LL  M+
Sbjct: 357 YNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMV 416

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
            RG  P + T++ L+ G   VG+V+ A +  +    +G
Sbjct: 417 SRGRQPDVATWSTLVAGLFRVGQVDAAYSFLNLAMSQG 454


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 169/355 (47%), Gaps = 39/355 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+ G C +G   DA ++  +M   G  PNV     L++ L   G ++  ++L 
Sbjct: 206 NRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQL- 264

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG--INANTLLCKK 140
              +  M D G +  P+   Y + + GLCK   V++     + ++D G  +      C  
Sbjct: 265 ---LGSMKDKGCL--PDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLI 319

Query: 141 TKLVEANRLLE------LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L +A R  E       M++R ++P +  YT ++ G    G++  A++  D M +KGF+
Sbjct: 320 DGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFV 379

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD F Y+ ++   C + ++E A  +  EM+ N            N+V ++ T  I I GL
Sbjct: 380 PDTFCYNTVLKVLCDHGDLERAHTLRSEMLQN------------NLVLDSTTQTIMICGL 427

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC------- 307
           CK G V E M++F  +    C+  V  +N+LI G  + G  E A  LF+K+         
Sbjct: 428 CKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLF 487

Query: 308 ------KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                  N V D  +   L+H + + GQ+ K   LL S+ ++G   DV T+NTL+
Sbjct: 488 LRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLI 542



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 147/350 (42%), Gaps = 26/350 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +   F +L+      G   DA Q   +M  F  RP     +T++  L  +G + L L 
Sbjct: 134 PASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALA 193

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------ 134
           L+  MV           PN   Y  L+DGLCK  +      +F EM D+GI  N      
Sbjct: 194 LYNRMV------AAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTV 247

Query: 135 --TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             + LC   K+ EA +LL  M  +G  P   TY   L+G C VG+VN A      +   G
Sbjct: 248 LLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGG 307

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F   +  YS LI+G  +    +E           G+ K   E    N+ P+     I I 
Sbjct: 308 FALGLKGYSCLIDGLFQARRFDEGF---------GYYKTMLER---NISPDVVLYTIMIR 355

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G  + G + + +     ++          +N++++  C  G  E A  L +++   NLV 
Sbjct: 356 GCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVL 415

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           D     I+I  L K G + +   +   M E+GC   V T+N L+  F ++
Sbjct: 416 DSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYRE 465



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 127/300 (42%), Gaps = 41/300 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +  +I+G    G I DA   +  M   G  P+    +T++  L   G++     L  E
Sbjct: 348 VLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSE 407

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+          +  + C      GLCK  LVD+   +F EM + G +   +        
Sbjct: 408 MLQNNLVLDSTTQTIMIC------GLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIF--------------TYTPLLNGYCLVGKVNVAI 182
             ++ +L EA R+L   M+ G NP +F              +   L++  C  G+V  A 
Sbjct: 462 FYREGRLEEA-RMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAY 520

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            L  S+   G +PDV +Y+ LING CK  N            L+G  ++F E++L  + P
Sbjct: 521 KLLRSIIDSGVVPDVVTYNTLINGLCKARN------------LDGAVRLFKELQLKGISP 568

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDGL +     + M LF  +  S     + I+NS++R  C+      A  L+
Sbjct: 569 DEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 123/256 (48%), Gaps = 32/256 (12%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+++K  C  G++  A  L  +M       + TT   +I GL + G ++  +++  EM 
Sbjct: 385 YNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEM- 443

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKG-------INANTL- 136
              G+ G    P V  Y +LIDG  ++  +++ + LF  MEM +         + AN + 
Sbjct: 444 ---GEHGC--DPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVC 498

Query: 137 -----------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
                      +C+  ++++A +LL  ++  G+ P + TY  L+NG C    ++ A+ LF
Sbjct: 499 DSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLF 558

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---KIFNEM--KLCNV 240
             +  KG  PD  +Y  LI+G  +     +AM + + ++ +G      I+N M   LC +
Sbjct: 559 KELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRM 618

Query: 241 VPETFTCNIFIDGLCK 256
              +   N+++D L K
Sbjct: 619 KKLSQAINLWLDYLPK 634



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 158/405 (39%), Gaps = 74/405 (18%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   + R   P N   +  L+   C  G I +A QL+  M   GC P+  T +  +
Sbjct: 226 ALKMFDEMLDRGIMP-NVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFL 284

Query: 67  TGLRRTGNMN---------------LTLKLHQEMVNGMG-----DFG-GIYK-------- 97
           +GL + G +N               L LK +  +++G+      D G G YK        
Sbjct: 285 SGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNIS 344

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRL 149
           P+V  Y  +I G  +   ++        MK KG   +T        +LC    L  A+ L
Sbjct: 345 PDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTL 404

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              M+Q  L     T T ++ G C  G V+ A+ +FD M   G  P V +Y+ LI+G+ +
Sbjct: 405 RSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYR 464

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKL-----CN------------------------- 239
              +EEA  +  +M +     +F  + L     C+                         
Sbjct: 465 EGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLR 524

Query: 240 ------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                 VVP+  T N  I+GLCK  ++   + LF  L++         + +LI G  +  
Sbjct: 525 SIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAH 584

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
               A  LF  +        +  YN ++ +L +  ++ +   L L
Sbjct: 585 RENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWL 629



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 29/244 (11%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + +VL A     S I     P + VT+N+LI G C   N+  A +L K++   G  P+  
Sbjct: 513 SGQVLKAYKLLRSIIDSGVVP-DVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEI 571

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T  TLI GL R    N  + L Q ++           P++  Y S++  LC+ + + Q  
Sbjct: 572 TYGTLIDGLLRAHRENDAMMLFQNILQSGS------SPSLSIYNSMMRSLCRMKKLSQAI 625

Query: 121 DLFMEMKDKGIN---ANTLLCKKTKLVE-------ANRLLELMMQRGL---NPVIFTYTP 167
           +L+++   K  N    + +L    K +E          L+++  + G    NP    YT 
Sbjct: 626 NLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGYISSNP----YTI 681

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV-----SRE 222
            L G C V + + A+ +F ++   G        ++LIN  C + N+  A+++     S+ 
Sbjct: 682 WLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNAAVDIMLYALSKS 741

Query: 223 MILN 226
           +IL+
Sbjct: 742 IILS 745


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 157/335 (46%), Gaps = 45/335 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+  F  EG IR A  +   +  +G RP+V + +TL+ G  + G+++
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L   M        G+ +P+V+ Y  LI+GLCK+                       
Sbjct: 189 EGFRLKNXM-----QASGV-QPDVYTYSVLINGLCKE----------------------- 219

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
               +K+ +AN L + M+  GL P   T+T L++G+C  G+V++A+ ++  M  +   PD
Sbjct: 220 ----SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CK  ++++A +++ EM + G K            P+  T    IDG CK
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK------------PDKITYTTLIDGSCK 323

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            GH+    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  
Sbjct: 324 EGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           Y ++I+   K+G +   + LL  M+ +G    V T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 163/366 (44%), Gaps = 29/366 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           A   F + +      ++D+  F+ LI  +   G +RDA +  +       R    TC  +
Sbjct: 48  ASAVFAAJLETKGTQISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKV 107

Query: 66  ITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           J  L +     L    ++E +  G       Y  +++ +  L+    K+  +   + +F 
Sbjct: 108 JEHLMKLKYFKLVWGFYEESLECG-------YPASLYFFNILMHSFVKEGEIRLAQSVFD 160

Query: 125 EMKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
            +   G+       NTL+    K   L E  RL   M   G+ P ++TY+ L+NG C   
Sbjct: 161 AITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKES 220

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           K++ A  LFD M   G +P+  +++ LI+G+CKN  V+ AM + ++M+            
Sbjct: 221 KMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ---------- 270

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
             ++ P+  T N  I GLCK G + +  +L   + +   +     + +LI G CK G  E
Sbjct: 271 --SLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLE 328

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A E   ++  +N+  D VAY  LI  L +EG+      +L  M   G   ++ T+  ++
Sbjct: 329 TAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMII 388

Query: 357 ISFLQK 362
             F +K
Sbjct: 389 NEFCKK 394



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 13/218 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + + + GL P + ++  L+NGY  +G ++    L + M   G  PDV++YSVLIN
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLIN 214

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G CK   +++A  +  EM+ NG            +VP   T    IDG CKNG V   ME
Sbjct: 215 GLCKESKMDDANELFDEMLDNG------------LVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           ++  +   +    +  +N+LI G CK G  + A +L +++S K L  D + Y  LI    
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSC 322

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           KEG ++        M +    LD D   T +IS L +E
Sbjct: 323 KEGHLETAFEYRKRMIKENIRLD-DVAYTALISGLCQE 359


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 162/327 (49%), Gaps = 28/327 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V F+ L+K +   G +R+  +  ++M   G  P V T + L+ GL +    +   +++
Sbjct: 187 DPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVY 246

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
           +EM      FG    PN++ +  L   LCKD    +      +M+++G +      NTL+
Sbjct: 247 EEMER----FG--IAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLI 300

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+K +L +A  L ++M +RG+ P + +YT L+NG C  G+V  A  LF  M  +G  
Sbjct: 301 NSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLS 360

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ +Y+ LI+GYCK   ++E+ ++  +MI NG            + P++FTC + ++G 
Sbjct: 361 PDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNG------------ISPDSFTCWVLVEGY 408

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K G  L  + L   L+     +  +I++ LI   C+      A  L  ++S      ++
Sbjct: 409 GKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPEL 468

Query: 315 VAYNILIHALGKEGQIKKENYLLLSME 341
             YN LI +  +   I +   LLL ME
Sbjct: 469 EIYNELIKSFCQCDCIAEA--LLLKME 493



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 145/341 (42%), Gaps = 37/341 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TFN L    C +G+    ++ ++KM   G  P++ T +TLI    R G ++    L+
Sbjct: 257 NLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLY 316

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
           + M        G+  P++  Y +L++GLCK+  V +   LF  M  +G++      NTL+
Sbjct: 317 KIMYR-----RGVV-PDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLI 370

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK+ K+ E+  LL  M+  G++P  FT   L+ GY   GK   A+ L   + R G  
Sbjct: 371 HGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVS 430

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---KIFNEM--KLCN---------- 239
                YS LI   C+      A N+   M  +G K   +I+NE+    C           
Sbjct: 431 ISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLL 490

Query: 240 --------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                   + P   T    I  L +    +E   L   +  S     +EI  +L  G C+
Sbjct: 491 KMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYCR 550

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
               + A  L +  + +  + D  ++N LI     +G I +
Sbjct: 551 ENDIDKAESLLSFFAKEFQIHDTESFNALIRITSAKGDIAR 591



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 15/232 (6%)

Query: 131 INANTLLCKKTKLVEANRLLELM--MQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           I +N LL    KL   +R  E+   M+R G+ P ++T+  L +  C  G         + 
Sbjct: 224 ITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEK 283

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +GF PD+ +Y+ LIN YC+   +++A  + + M   G            VVP+  + 
Sbjct: 284 MEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRG------------VVPDLVSY 331

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              ++GLCK G V E  +LF  +        +  +N+LI G CK G  + +  L + +  
Sbjct: 332 TALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIW 391

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             +  D     +L+   GKEG+      L++ ++  G ++  D ++ L+++ 
Sbjct: 392 NGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVAL 443



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 102/201 (50%), Gaps = 14/201 (6%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           +PV+F    L+  Y  +G+V   +  F  M R GF+P V + + L+NG  K       +N
Sbjct: 187 DPVVFDM--LVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLK-------LN 237

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
            +     +   +++ EM+   + P  +T NI    LCK+G   +V +    +E    +  
Sbjct: 238 YT-----DRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPD 292

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+LI   C+ G  + A  L+  +  + +V D+V+Y  L++ L KEG++++ + L  
Sbjct: 293 IVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFH 352

Query: 339 SMEENGCALDVDTFNTLMISF 359
            M   G + D+ T+NTL+  +
Sbjct: 353 RMVHRGLSPDIVTYNTLIHGY 373


>gi|224141281|ref|XP_002324003.1| predicted protein [Populus trichocarpa]
 gi|222867005|gb|EEF04136.1| predicted protein [Populus trichocarpa]
          Length = 626

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 155/312 (49%), Gaps = 26/312 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + + F+ L+K +   G I++  +   ++   G  P+V  C+ L+ GL ++ +++L   ++
Sbjct: 181 DPIIFDLLLKAYVKAGMIKEGFRTFMQILEVGYVPSVIACNYLLNGLLKSNHIHLCWHVY 240

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
            E    MG  G I  PN + +  L    CKD  +D+  D   +M+++G     +  NTL+
Sbjct: 241 GE----MGRVGVI--PNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLI 294

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C + +L +A  L  +M +R + P + +YT L+NG C  G+V  A  L   M  +G  
Sbjct: 295 NGYCGRGRLSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLN 354

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV SY+ LI GYCK   + E+ ++  EMI NG            + P++FTC + I G 
Sbjct: 355 PDVVSYNTLICGYCKEGKMLESKSLLYEMIGNG------------IFPDSFTCRVLIQGY 402

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K G ++  + L   LE     +  +I++ L+   C+      A  L  ++S +  +  V
Sbjct: 403 RKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDRPFAAKTLLERMSQRGYIPHV 462

Query: 315 VAYNILIHALGK 326
             YN LI +L K
Sbjct: 463 EIYNKLIESLCK 474



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 30/344 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TFN L   FC +G+I   +  ++KM   G  P++ T +TLI G    G ++    L+
Sbjct: 251 NSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGRLSDAFYLY 310

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
           + M      +     P++  Y +L++GLCK+  V +   L   M  +G+N      NTL+
Sbjct: 311 RIM------YRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLI 364

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-- 192
              CK+ K++E+  LL  M+  G+ P  FT   L+ GY   G +  A+ L   + + G  
Sbjct: 365 CGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGVS 424

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD++ Y  L+   C+      A  +   M   G+            +P     N  I+
Sbjct: 425 ISPDIYDY--LVASLCEEDRPFAAKTLLERMSQRGY------------IPHVEIYNKLIE 470

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK   V + + L   + + N    +  + +LIR  C+ G    A +L  ++    L  
Sbjct: 471 SLCKGDCVADALSLKAEIVVGNINPNLLTYKALIRCLCRMGRSIEAEKLMEEMLHFGLQP 530

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D      +IH   +E    K   LL+   +     D ++++TL+
Sbjct: 531 DPEICRAMIHGYCREKDAGKAESLLVLFAKEFQIFDSESYSTLV 574



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 146/340 (42%), Gaps = 29/340 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   +    RRC  P + V++ +L+ G C EG +R+A QL+ +M   G  P+V + +TLI
Sbjct: 306 AFYLYRIMYRRCVLP-DLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLI 364

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G M  +  L  EM+ G G F     P+ F    LI G  K+  +    +L +E+
Sbjct: 365 CGYCKEGKMLESKSLLYEMI-GNGIF-----PDSFTCRVLIQGYRKEGWLISALNLVVEL 418

Query: 127 KDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           +  G++ +          LC++ +   A  LLE M QRG  P +  Y  L+   C    V
Sbjct: 419 EKFGVSISPDIYDYLVASLCEEDRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCKGDCV 478

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A++L   +      P++ +Y  LI   C+     EA  +  EM+  G +         
Sbjct: 479 ADALSLKAEIVVGNINPNLLTYKALIRCLCRMGRSIEAEKLMEEMLHFGLQ--------- 529

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF-VEIFNSLIRGCCKFGIFEI 297
              P+   C   I G C+     +   L   L     ++F  E +++L+R  C+ G    
Sbjct: 530 ---PDPEICRAMIHGYCREKDAGKAESLL-VLFAKEFQIFDSESYSTLVRIVCEDGDVAK 585

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
             EL  ++       + +    +I  L K   + KE  +L
Sbjct: 586 FMELQERMLKVGFAPNSLTCKYMIDGLRKNVGLVKEKLIL 625



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 14/201 (6%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           +P+IF    LL  Y   G +      F  +   G++P V + + L+NG  K+ ++    +
Sbjct: 181 DPIIFDL--LLKAYVKAGMIKEGFRTFMQILEVGYVPSVIACNYLLNGLLKSNHIHLCWH 238

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           V            + EM    V+P ++T NI     CK+G + ++ +    +E    E  
Sbjct: 239 V------------YGEMGRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPD 286

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+LI G C  G    A  L+  +  + ++ D+V+Y  L++ L KEG++++ + LL 
Sbjct: 287 IVTYNTLINGYCGRGRLSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLH 346

Query: 339 SMEENGCALDVDTFNTLMISF 359
            M   G   DV ++NTL+  +
Sbjct: 347 RMVHRGLNPDVVSYNTLICGY 367



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 12/211 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M + G+ P  +T+  L + +C  G ++      + M  +GF PD+ +Y+ LINGYC    
Sbjct: 243 MGRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGR 302

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
           + +A  + R M            + C V+P+  +    ++GLCK G V E  +L   +  
Sbjct: 303 LSDAFYLYRIM-----------YRRC-VLPDLVSYTALMNGLCKEGRVREAHQLLHRMVH 350

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 V  +N+LI G CK G    +  L  ++    +  D     +LI    KEG +  
Sbjct: 351 RGLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRVLIQGYRKEGWLIS 410

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
              L++ +E+ G ++  D ++ L+ S  +++
Sbjct: 411 ALNLVVELEKFGVSISPDIYDYLVASLCEED 441



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 11/173 (6%)

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL-------NGFKKIFNEMKLCNVVPET 244
           G  P   +Y ++++    +   E+AM    E+IL       + F+ +F   + CN  P  
Sbjct: 125 GLKPSTLNYCLILHVLAWSKEFEQAMKFLTELILLVKDTDEDVFQCLFLCCQDCNWDPII 184

Query: 245 FTCNIFIDGLCKNGHVLEVMELF-PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
           F  ++ +    K G + E    F   LE+      +   N L+ G  K     +   ++ 
Sbjct: 185 F--DLLLKAYVKAGMIKEGFRTFMQILEVGYVPSVIAC-NYLLNGLLKSNHIHLCWHVYG 241

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++    ++ +   +NIL H   K+G I K N  L  MEE G   D+ T+NTL+
Sbjct: 242 EMGRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLI 294


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 179/387 (46%), Gaps = 41/387 (10%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           AF S +RR   P +  TFN++I G C  G +R A  + K +  +G  P+V T ++LI G 
Sbjct: 178 AFRSALRRRVSP-DIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGY 236

Query: 70  RR---TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            +    GNM     L +EMV       GI  P    +G LI+G CK+        +F EM
Sbjct: 237 CKKGGAGNMYHVDMLLKEMVEA-----GI-SPTAVTFGVLINGYCKNSNTAAAVRVFEEM 290

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K +GI A+ +        LC + K+ E  +L+E M   GL+P   T+  +L G+C  G +
Sbjct: 291 KQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMM 350

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
             A    D M  +   PDV  Y++LI+ Y +   +E+AM V   M              +
Sbjct: 351 ADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCL 410

Query: 225 LNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           + GF +         + +EMK   +  +  T N+ I  LC  G V + ++L   +     
Sbjct: 411 ITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGL 470

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           E     +N++I+G C  G  + A E+  ++      A+VV YN+ I    + G++ + N 
Sbjct: 471 EPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAND 530

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQK 362
           LL  M +     +  T+ T+    ++K
Sbjct: 531 LLNEMLDKCLVPNGITYETIKEGMMEK 557



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 32/366 (8%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           L+A  S  R  +RP +  + N+L+ G      +  A +  +        P++ T +T+I+
Sbjct: 143 LLAGESHPR--HRP-STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVIS 199

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD---QTKDLFM 124
           GL R G     L+   ++   +  +G    P+V  Y SLIDG CK            L  
Sbjct: 200 GLCRIGQ----LRKAGDVAKDIKAWG--LAPSVATYNSLIDGYCKKGGAGNMYHVDMLLK 253

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           EM + GI+   +         CK +    A R+ E M Q+G+   + TY  L++G C  G
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEG 313

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           KV   + L + M   G  P+  ++  ++ G+CK   + +A +              + M 
Sbjct: 314 KVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADAND------------WIDGMT 361

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
             NV P+    NI ID   + G + + M +   +        V  +N LI G  + G + 
Sbjct: 362 ERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWR 421

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            AS L +++  K + ADVV YN+LI AL  +G+++K   LL  M E G   +  T+NT++
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 357 ISFLQK 362
             F  K
Sbjct: 482 QGFCDK 487


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 162/327 (49%), Gaps = 28/327 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V F+ L+K +   G +R+  +  ++M   G  P V T + L+ GL +    +   +++
Sbjct: 232 DPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVY 291

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
           +EM      FG    PN++ +  L   LCKD    +      +M+++G +      NTL+
Sbjct: 292 EEMER----FG--IAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLI 345

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+K +L +A  L ++M +RG+ P + +YT L+NG C  G+V  A  LF  M  +G  
Sbjct: 346 NSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLS 405

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ +Y+ LI+GYCK   ++E+ ++  +MI NG            + P++FTC + ++G 
Sbjct: 406 PDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNG------------ISPDSFTCWVLVEGY 453

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K G  L  + L   L+     +  +I++ LI   C+      A  L  ++S      ++
Sbjct: 454 GKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXEL 513

Query: 315 VAYNILIHALGKEGQIKKENYLLLSME 341
             YN LI +  +   I +   LLL ME
Sbjct: 514 EIYNELIKSFCQCDCIAEA--LLLKME 538



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 15/232 (6%)

Query: 131 INANTLLCKKTKLVEANRLLELM--MQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           I +N LL    KL   +R  E+   M+R G+ P ++T+  L +  C  G         + 
Sbjct: 269 ITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEK 328

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +GF PD+ +Y+ LIN YC+   +++A  + + M   G            VVP+  + 
Sbjct: 329 MEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRG------------VVPDLVSY 376

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              ++GLCK G V E  +LF  +        +  +N+LI G CK G  + +  L + +  
Sbjct: 377 TALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIW 436

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             +  D     +L+   GKEG+      L++ ++  G ++  D ++ L+++ 
Sbjct: 437 NGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVAL 488



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 139/337 (41%), Gaps = 45/337 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TFN L    C +G+    ++ ++KM   G  P++ T +TLI    R G ++    L+
Sbjct: 302 NLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLY 361

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
           + M        G+  P++  Y +L++GLCK+  V +   LF  M                
Sbjct: 362 KIMYR-----RGVV-PDLVSYTALMNGLCKEGRVREAHQLFHRM---------------- 399

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                      + RGL+P I TY  L++GYC  GK+  + +L   M   G  PD F+  V
Sbjct: 400 -----------VHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWV 448

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           L+ GY K      A+N+  E+   G           ++  + ++    I  LC+      
Sbjct: 449 LVEGYGKEGKFLSALNLVVELQRFG----------VSISQDIYS--YLIVALCRENRPFA 496

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
              L   +     +  +EI+N LI+  C+      A  L  ++  K +  ++  Y  +J 
Sbjct: 497 AKNLLERMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJG 556

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            L +  +  +   L+  M  +G   D++    L   +
Sbjct: 557 CLSRLSRSMEGESLVGEMVASGXLPDLEICRALFYGY 593



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 102/201 (50%), Gaps = 14/201 (6%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           +PV+F    L+  Y  +G+V   +  F  M R GF+P V + + L+NG  K       +N
Sbjct: 232 DPVVFDM--LVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLK-------LN 282

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
            +     +   +++ EM+   + P  +T NI    LCK+G   +V +    +E    +  
Sbjct: 283 YT-----DRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPD 337

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+LI   C+ G  + A  L+  +  + +V D+V+Y  L++ L KEG++++ + L  
Sbjct: 338 IVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFH 397

Query: 339 SMEENGCALDVDTFNTLMISF 359
            M   G + D+ T+NTL+  +
Sbjct: 398 RMVHRGLSPDIVTYNTLIHGY 418



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 30/273 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++ +L+ G C EG +R+A QL  +M   G  P++ T +TLI G  + G M  +  L  +
Sbjct: 374 VSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHD 433

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TL 136
           M+     + GI  P+ F    L++G  K+       +L +E++  G++ +          
Sbjct: 434 MI-----WNGI-SPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVA 487

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC++ +   A  LLE M Q G    +  Y  L+  +C    +  A+ L   M  K   P+
Sbjct: 488 LCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPN 547

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y  +J    +     E  ++  EM+ +G             +P+   C     G C+
Sbjct: 548 LATYRAVJGCLSRLSRSMEGESLVGEMVASG------------XLPDLEICRALFYGYCR 595

Query: 257 NGHVLEVMEL--FPTLEISNCELFVEIFNSLIR 287
              + +   L  F   E    +   E FN+LIR
Sbjct: 596 ENDIDKAESLLSFXAKEFQIHD--TESFNALIR 626


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 158/324 (48%), Gaps = 28/324 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           N VT N  +K  C E      ++ VK++    G  P++ T  TLI    + G+++  L  
Sbjct: 379 NQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGAL-- 436

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
             EM+  MG  G   K N     +++D LCK+R +D+  +L      +G     +   TL
Sbjct: 437 --EMMREMGQKG--IKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTL 492

Query: 137 LC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +    ++ K+ +A  + + M +  + P + T+  L+ G C  GK  +A+  FD +A  G 
Sbjct: 493 IMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGL 552

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +PD  +++ +I GYCK   VE+A     E I + FK            P+ +TCNI ++G
Sbjct: 553 LPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFK------------PDNYTCNILLNG 600

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G   + +  F TL I   E+    +N++I   CK    + A +L +++  K L  D
Sbjct: 601 LCKEGMTEKALNFFNTL-IEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPD 659

Query: 314 VVAYNILIHALGKEGQIKKENYLL 337
              YN  I  L ++G++ + + LL
Sbjct: 660 RFTYNSFISLLMEDGKLSETDELL 683



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 180/407 (44%), Gaps = 73/407 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N+L+ G+C  G++++A Q+V+ M      P++ T + LI GL   G+M   L   
Sbjct: 274 NRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGL--- 330

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            E+++ M       +P+V  Y +LIDG  +  L  + + L  +M++ G+ AN +      
Sbjct: 331 -ELMDAMKSLK--LQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISL 387

Query: 137 --LCKKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             LCK+ K     R + EL+   G +P I TY  L+  Y  VG ++ A+ +   M +KG 
Sbjct: 388 KWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGI 447

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KK 230
             +  + + +++  CK   ++EA N+       GF                        +
Sbjct: 448 KMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALE 507

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +++EMK   + P   T N  I GLC +G     ME F  L  S        FNS+I G C
Sbjct: 508 MWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYC 567

Query: 291 KFGIFEIASELFNK----------LSCKNLV------------------------ADVVA 316
           K G  E A E +N+           +C  L+                         D V 
Sbjct: 568 KEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVDTVT 627

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           YN +I A  K+ ++K+   LL  MEE G   D  T+N+  IS L ++
Sbjct: 628 YNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSF-ISLLMED 673



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 154/346 (44%), Gaps = 25/346 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +   F+  +  +  EG    A Q+ +KM     +PN+ TC+TL+ GL R  + + ++ 
Sbjct: 128 PPSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPS-SFSIS 186

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK------GINAN 134
             +E+ + M   G     NV  +  L++G C +  ++    +   M  +       +  N
Sbjct: 187 SAREVFDDMVKIG--VSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYN 244

Query: 135 TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           T+L    KK +L +   LL  M + GL P   TY  L+ GYC +G +  A  + + M + 
Sbjct: 245 TILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT 304

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
             +PD+ +Y++LING C   ++ E +            ++ + MK   + P+  T N  I
Sbjct: 305 NVLPDLCTYNILINGLCNAGSMREGL------------ELMDAMKSLKLQPDVVTYNTLI 352

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL-SCKNL 310
           DG  + G  LE  +L   +E    +      N  ++  CK    E  +    +L      
Sbjct: 353 DGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGF 412

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             D+V Y+ LI A  K G +     ++  M + G  ++  T NT++
Sbjct: 413 SPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTIL 458



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 14/219 (6%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK-GFMPDVFSYSVLI 204
           A  + + M++ G++  + T+  L+NGYCL GK+  A+ + + M  +    PD  +Y+ ++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
                         +S++  L+  K++  +MK   +VP   T N  + G CK G + E  
Sbjct: 248 KA------------MSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAF 295

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           ++   ++ +N    +  +N LI G C  G      EL + +    L  DVV YN LI   
Sbjct: 296 QIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGC 355

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            + G   +   L+  ME +G   +  T N + + +L KE
Sbjct: 356 FELGLSLEARKLMEQMENDGVKANQVTHN-ISLKWLCKE 393



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 22/224 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +++VT+ +LI GF  E  +  A ++  +M      P V+T ++LI GL   G   L ++ 
Sbjct: 484 VDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEK 543

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME-----MKDKGINANTL 136
             E+        G+  P+   + S+I G CK+  V++  + + E      K      N L
Sbjct: 544 FDELAE-----SGLL-PDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNIL 597

Query: 137 ---LCKKTKLVEA-NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
              LCK+    +A N    L+ +R ++ V  TY  +++ +C   K+  A  L   M  KG
Sbjct: 598 LNGLCKEGMTEKALNFFNTLIEEREVDTV--TYNTMISAFCKDKKLKEAYDLLSEMEEKG 655

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
             PD F+Y+  I+   ++  + E      + +L  F   F  MK
Sbjct: 656 LEPDRFTYNSFISLLMEDGKLSET-----DELLKKFSGKFGSMK 694



 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 26/135 (19%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F + I    R ++ VT+N++I  FC +  +++A  L+ +M   G  P+  T ++ I
Sbjct: 610 ALNFFNTLIEE--REVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFI 667

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK--------------------PNVFCYGSL 106
           + L   G ++ T +L ++     G FG + +                         Y  +
Sbjct: 668 SLLMEDGKLSETDELLKKFS---GKFGSMKRDLQVETEKNPATSESKEELNTEAIAYSDV 724

Query: 107 IDGLC-KDRLVDQTK 120
           ID LC + RL + ++
Sbjct: 725 IDELCSRGRLKEHSR 739


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 148/328 (45%), Gaps = 26/328 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N ++ G C EG + DA + +K + ++GC PN  + + ++ GL          KL  E
Sbjct: 223 VTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAE 282

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M            PNV  +  LI  LC+  LV+   ++  ++   G   N+L        
Sbjct: 283 MSRKG------RPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHA 336

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+  A   +ELM+  G  P I +Y  LL   C  G+V+ A+ L   +  KG  P 
Sbjct: 337 FCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPV 396

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + SY+ +I+G  K    EEA+ +  EM+  G +            P+  T +    GLC+
Sbjct: 397 LISYNTVIDGLTKAGKTEEALELLNEMVTKGLQ------------PDIITYSTISSGLCR 444

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E ++ F  ++         ++N+++ G CK      A +LF  +     + +   
Sbjct: 445 EGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNEST 504

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
           Y ILI  L  EG +K+   ++  +   G
Sbjct: 505 YTILIEGLAYEGLVKEAREMMAELCSRG 532



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 159/346 (45%), Gaps = 26/346 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N+LI+G C  G   +A  ++  M   GC P+V T   L+    +       +KL  EM
Sbjct: 154 TYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEM 213

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                D G    P++  Y  +++G+C++  VD   +    +   G   NT+        L
Sbjct: 214 ----RDKG--CAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGL 267

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +  +A +L+  M ++G  P + T+  L++  C  G V  A+ + D + + G  P+ 
Sbjct: 268 CTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNS 327

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY+ +++ +CK   ++ AM     M+ +G              P+  + N  +  LC+ 
Sbjct: 328 LSYNPILHAFCKQKKMDRAMAFVELMVSSG------------CYPDIVSYNTLLTALCRG 375

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V   +EL   L+   C   +  +N++I G  K G  E A EL N++  K L  D++ Y
Sbjct: 376 GEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITY 435

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + +   L +EG+I++       +++ G   +   +N +++   ++ 
Sbjct: 436 STISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRR 481



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 163/365 (44%), Gaps = 28/365 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL      +RR   P + VT+  L++  C     + A +L+ +M   GC P++ T + ++
Sbjct: 171 ALAVLDDMLRRGCVP-DVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVV 229

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G+ + G ++  +    E +  +  +G   +PN   Y  ++ GLC     +  + L  EM
Sbjct: 230 NGICQEGRVDDAM----EFLKSLPSYG--CEPNTVSYNIVLKGLCTAERWEDAEKLMAEM 283

Query: 127 KDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             KG   N        + LC++  +  A  +L+ + + G  P   +Y P+L+ +C   K+
Sbjct: 284 SRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKM 343

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + A+A  + M   G  PD+ SY+ L+   C+   V+ A+            ++ +++K  
Sbjct: 344 DRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAV------------ELLHQLKDK 391

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P   + N  IDGL K G   E +EL   +     +  +  ++++  G C+ G  E A
Sbjct: 392 GCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEA 451

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            + F K+    +  + V YN ++  L K         L   M  NGC  +  T+ T++I 
Sbjct: 452 IKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTY-TILIE 510

Query: 359 FLQKE 363
            L  E
Sbjct: 511 GLAYE 515



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 160/357 (44%), Gaps = 31/357 (8%)

Query: 9   MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT-TCDTLIT 67
           +A+   +     P      N  ++     G++ +A +LV+ MA  G  P+    C  LI 
Sbjct: 41  LAYAGAVAPNAVPHRSAASNDRLRVLVRRGDLEEAIRLVESMA--GLEPSAAGPCAALIK 98

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--ME 125
            L  +G    T +  + + +         +P+V  Y +++ G C    +D  + L   M 
Sbjct: 99  KLCASGR---TAEARRVLAS--------CEPDVMSYNAMVAGYCVTGQLDNARRLVAAMP 147

Query: 126 MKDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           M+      NTL   LC + +   A  +L+ M++RG  P + TYT LL   C       A+
Sbjct: 148 MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAV 207

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            L D M  KG  PD+ +Y+V++NG C+   V++AM   + +   G +            P
Sbjct: 208 KLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCE------------P 255

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
            T + NI + GLC      +  +L   +        V  FN LI   C+ G+ E A E+ 
Sbjct: 256 NTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEIL 315

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +++       + ++YN ++HA  K+ ++ +    +  M  +GC  D+ ++NTL+ + 
Sbjct: 316 DQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTAL 372



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 13/132 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T++++  G C EG I +A +   K+   G RPN    + ++ GL +    +  + L   
Sbjct: 433 ITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTY 492

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143
           MV NG         PN   Y  LI+GL  + LV + +++  E+  +G+ + TL+ K    
Sbjct: 493 MVSNGC-------MPNESTYTILIEGLAYEGLVKEAREMMAELCSRGVVSKTLVNKG--- 542

Query: 144 VEANRLLELMMQ 155
             A RLL+  M 
Sbjct: 543 --AIRLLDGTMH 552


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 180/407 (44%), Gaps = 55/407 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++L  ++A G     CY       FNSL+  +C   +   A +L+KKM    C+P     
Sbjct: 364 RILSMMIAEG-----CYPSYT--IFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVY 416

Query: 63  DTLITGLRRTGNM------NLTLKLHQEMVN------------------GMGDFGGIYK- 97
           + LI  +   G +       L  K + EM++                  G G F   YK 
Sbjct: 417 NILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKV 476

Query: 98  ----------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCK 139
                     P+   Y  +I  LC    V+    LF EMK  G+  +            K
Sbjct: 477 IHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSK 536

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
              + +A+  L+ M++ G  P + TYT L++ Y    KV+VA  LF+ M  KG  P+V +
Sbjct: 537 AGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVIT 596

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNG-FKKIFNEMKLCNVV---PETFTCNIFIDGLC 255
           Y+ LI+GYCK+ N+E+A  +   M  +     +    K+ N V   P   T    +DGLC
Sbjct: 597 YTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLC 656

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K   V +  +L  T+ +  CE    ++++LI G CK    + A E+F+K+       +V 
Sbjct: 657 KAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVY 716

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            Y+ LI  L K+ ++     +L  M EN CA ++  + T MI  L K
Sbjct: 717 TYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIY-TEMIDGLSK 762



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 162/349 (46%), Gaps = 30/349 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+ G C    ++DA  L++ M   GC PN    D LI G  +   ++      
Sbjct: 644 NVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEA---- 699

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QE+ + M + G  Y PNV+ Y SLID L KD+ +D    +  +M +     N +      
Sbjct: 700 QEVFHKMVEHG--YNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMI 757

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K  K  EA +L+ +M ++G  P + TYT +++G+   GKV+  + LF  M  KG  
Sbjct: 758 DGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCA 817

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+VLIN  C   +++EA  +  EM    + K  +    C V          I+G 
Sbjct: 818 PNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVS--SYCKV----------IEGY 865

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL--SCKNLVA 312
            K   +L  + L   +E +     + ++  LI    K G  E+A EL  ++  +  ++ A
Sbjct: 866 -KREFILS-LGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAA 923

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
               Y  LI++     +I     L   M  +G   D+ TF  L++  ++
Sbjct: 924 KKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIR 972



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 154/356 (43%), Gaps = 34/356 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +LI  +     +  A++L + M   GC PNV T   LI G  ++GN+    +++  
Sbjct: 560 VTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYAR 619

Query: 85  MVNGMGDFGGI-----------YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
           M  G  D   +            KPNV  YG+L+DGLCK   V   +DL   M   G   
Sbjct: 620 M-RGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEP 678

Query: 134 NTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           NT++        CK  KL EA  +   M++ G NP ++TY+ L++      ++++ + + 
Sbjct: 679 NTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVL 738

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             M      P++  Y+ +I+G  K    +EA  +   M   G K            P   
Sbjct: 739 SKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCK------------PNVV 786

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T    IDG  K G V + +ELF  +    C      +  LI  CC  G  + A  L  ++
Sbjct: 787 TYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM 846

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
                   V +Y  +I    +E  +     LL  +E+NG A  +  +  L+ +F++
Sbjct: 847 KQTYWPKHVSSYCKVIEGYKREFILSLG--LLEEVEKNGSAPIILLYKVLIDNFVK 900



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 29/331 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  LI  F   G I+ A   + +M   GC P V T  TLI    +   +++  +L + M
Sbjct: 526 TYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELM 585

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           +   G F     PNV  Y +LIDG CK   +++   ++  M+      +  +  K K   
Sbjct: 586 I-AKGCF-----PNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIK--- 636

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
            N + E        P + TY  L++G C   KV  A  L ++M   G  P+   Y  LI+
Sbjct: 637 -NNVAE-------KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALID 688

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G+CK   ++EA  V  +M+ +G+             P  +T +  ID L K+  +  V++
Sbjct: 689 GFCKAAKLDEAQEVFHKMVEHGYN------------PNVYTYSSLIDRLFKDKRLDLVLK 736

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +   +  ++C   + I+  +I G  K    + A +L   +  K    +VV Y  +I   G
Sbjct: 737 VLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFG 796

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K G++ K   L   M   GCA +  T+  L+
Sbjct: 797 KAGKVDKCLELFREMGSKGCAPNFVTYTVLI 827



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 154/396 (38%), Gaps = 71/396 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG---------LRRTG 73
           N + +N +I G C      +A   + +M +  C PNV T   L+ G          +R  
Sbjct: 307 NTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRIL 366

Query: 74  NMNL------TLKLHQEMVNGM---GDFGGIY-----------KPNVFCYGSLIDGLCK- 112
           +M +      +  +   +V+      DF   Y           KP    Y  LI  +C  
Sbjct: 367 SMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSG 426

Query: 113 -----DRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLN 159
                    +  +  + EM   G   N +        LC   K  +A +++  MM  G  
Sbjct: 427 GELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFV 486

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P   TY+ ++   C   +V  A  LF  M   G +PDV++Y++LI+ + K   +++A N 
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNW 546

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             EM+ +G +            P   T    I    K   V    ELF  +    C   V
Sbjct: 547 LDEMVRDGCE------------PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNV 594

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKL-------------SCKNLVAD---VVAYNILIHA 323
             + +LI G CK G  E A +++ ++               KN VA+   VV Y  L+  
Sbjct: 595 ITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDG 654

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L K  ++K    LL +M  +GC  +   ++ L+  F
Sbjct: 655 LCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGF 690



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 146/424 (34%), Gaps = 98/424 (23%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            N LI+  C  G    A + + ++  FG +P   T + L+    R   ++    +H+EM 
Sbjct: 209 LNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMS 268

Query: 87  N---GMGDFG-----------GIYK------------PNVFCYGSLIDGLCKDRLVDQTK 120
                M +F            G ++            PN   Y  +I GLC+    ++  
Sbjct: 269 ELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAM 328

Query: 121 DLFMEMKDKGINANT-----LLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           D    M+      N      LLC    K +L    R+L +M+  G  P    +  L++ Y
Sbjct: 329 DFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAY 388

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC---------------KNFN----- 212
           C     + A  L   M +    P    Y++LI   C               K +N     
Sbjct: 389 CKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSA 448

Query: 213 ---------------------VEEAMNVSREMILNGFKK--------------------- 230
                                 E+A  V  EM+ NGF                       
Sbjct: 449 GTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENA 508

Query: 231 --IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
             +F EMK   VVP+ +T  I ID   K G + +       +    CE  V  + +LI  
Sbjct: 509 FFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHA 568

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K     +A+ELF  +  K    +V+ Y  LI    K G I+K   +   M  +    D
Sbjct: 569 YLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628

Query: 349 VDTF 352
           VD +
Sbjct: 629 VDMY 632



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 21/199 (10%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L+   C  G  NVA+     +   G+ P   +Y+ L+  + +   ++ A  V REM    
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREM---- 267

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE---IFNS 284
                +E+ L     + FT   F   LCK G   E + L         E FV    ++N 
Sbjct: 268 -----SELGLSM---DEFTLGFFAQALCKVGKWREALSLIEK------EDFVPNTILYNK 313

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +I G C+   FE A +  N++   + + +V  Y IL+     + Q+ +   +L  M   G
Sbjct: 314 MISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEG 373

Query: 345 CALDVDTFNTLMISFLQKE 363
           C      FN+L+ ++ + +
Sbjct: 374 CYPSYTIFNSLVHAYCKSD 392


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 168/377 (44%), Gaps = 46/377 (12%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P     FN L++     G +  A  +  +M + G R  V + +T+I+G+ R G+++    
Sbjct: 113 PPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAET 172

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--- 137
           LH+ M        G+  P+V+ YG+LI GLC+   ++  + +F +M  +G+  N ++   
Sbjct: 173 LHRRMSEA-----GV-TPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTI 226

Query: 138 -----CKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                CKK    +A  +LEL   M +RG+ P   TY  ++NG C    +  A  +   M 
Sbjct: 227 LIDAHCKKG---DAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMR 283

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------------------- 228
             G  PD  +Y+ LI+GYCK   ++ AM + + M+  G                      
Sbjct: 284 SAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSA 343

Query: 229 --KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
             +++  EM    + P+  T  + ID  C+ G V   + L   ++    +  V  +N ++
Sbjct: 344 DAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIM 403

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G CK G  + A  L N +    +  D + YNIL+    K G++     L       G  
Sbjct: 404 NGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL---KSAKGTV 460

Query: 347 LDVDTFNTLMISFLQKE 363
            D+  + +++   ++K+
Sbjct: 461 PDLGVYTSIVGEIVKKK 477



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 12/211 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           ++  GL P    +  L+     +G++  A  +FD M  +G    V S++ +I+G C+  +
Sbjct: 107 LLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGD 166

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                       L+G + +   M    V P+ +T    I GLC+ G + +   +F  +  
Sbjct: 167 ------------LDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCG 214

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              +    +F  LI   CK G  E   EL  ++  + +  D V YN +++ L +   +K 
Sbjct: 215 RGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKS 274

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            + +++ M   G   D  T+ TL+  + ++E
Sbjct: 275 ASGIVVEMRSAGLRPDTVTYTTLIDGYCKEE 305


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 170/361 (47%), Gaps = 29/361 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +V  A+  F   +R  ++  ND  TFN LI+G C  G    A +L+  M+ FGC P++ T
Sbjct: 186 RVEDAMKLFDEHLR--FQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVT 243

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI G  ++  +N   ++ +++ +G      +  P+V  Y S+I G CK   + +   
Sbjct: 244 YNTLIQGFCKSNELNKASEMFKDVKSG-----SVCSPDVVTYTSMISGYCKAGKMREASS 298

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  +M   GI    +          K  +++ A  +   M+  G  P + T+T L++GYC
Sbjct: 299 LLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYC 358

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
            VG+V+    L++ M  +G  P+ F+YS+LIN  C     E  +  +RE++         
Sbjct: 359 RVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCN----ENRLLKARELL--------G 406

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           ++   +++P+ F  N  IDG CK G V E   +   +E   C+     F  LI G C  G
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKG 466

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A  +F+K+       D +  + L+  L K G + KE Y L  +   G + +V    
Sbjct: 467 RMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAG-MAKEAYHLNQIARKGQSNNVVPLE 525

Query: 354 T 354
           T
Sbjct: 526 T 526



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 24/234 (10%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           +VTFN L+ G+   G +  A ++  KM +FGC P+V T  +LI G  R G ++   +L +
Sbjct: 312 NVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWE 371

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------ 137
           EM N  G F     PN F Y  LI+ LC +  + + ++L  ++  K I     +      
Sbjct: 372 EM-NARGMF-----PNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVID 425

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             CK  K+ EAN ++E M ++   P   T+T L+ G+C+ G++  A+++F  M   G  P
Sbjct: 426 GFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSP 485

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ETFTCN 248
           D  + S L++   K    +EA +++         +I  + +  NVVP ET T N
Sbjct: 486 DKITVSSLLSCLLKAGMAKEAYHLN---------QIARKGQSNNVVPLETKTAN 530



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 135/321 (42%), Gaps = 29/321 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N L +  C  G    A Q+ + M + G  PN      L++     G ++    L  + 
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL-------L 137
               G              SL++ L K DR+ D  K     ++ +  N           L
Sbjct: 165 FEVEG--------CCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGL 216

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF-MPD 196
           C   K  +A  LL +M   G  P I TY  L+ G+C   ++N A  +F  +       PD
Sbjct: 217 CGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPD 276

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ +I+GYCK   + EA ++  +M+  G            + P   T N+ +DG  K
Sbjct: 277 VVTYTSMISGYCKAGKMREASSLLDDMLRLG------------IYPTNVTFNVLVDGYAK 324

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +L   E+   +    C   V  F SLI G C+ G       L+ +++ + +  +   
Sbjct: 325 AGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFT 384

Query: 317 YNILIHALGKEGQIKKENYLL 337
           Y+ILI+AL  E ++ K   LL
Sbjct: 385 YSILINALCNENRLLKARELL 405


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 162/361 (44%), Gaps = 35/361 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+ G C  G +  A  L   M   G  P+  T  TLI    +         L Q 
Sbjct: 102 VTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQL 161

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL--- 136
           M +          P V+ Y S+I+GLCK+R VDQ   LF EMK  G     +  NTL   
Sbjct: 162 MASRKCS------PTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHG 215

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC K +L EA  LL +M++ G  P   T+T L+ G C   ++  A  LF  MA++G  PD
Sbjct: 216 LCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPD 275

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSR------EMIL------------NGF---KKIFNEM 235
           + +++VL++  C    +  A++V R      E ++             GF    ++  +M
Sbjct: 276 LVTHTVLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKM 335

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               V P   T   F  GL      +     F  +     E  +  +N L+ G CK    
Sbjct: 336 ARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRL 395

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           ++A ++   +    L  ++V YN L+    ++G+++    LL +M   G   DV T++TL
Sbjct: 396 DMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTL 455

Query: 356 M 356
           +
Sbjct: 456 V 456



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 156/382 (40%), Gaps = 63/382 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++  L+K  C  G I  A   + +MA     P+V T + +I  L +   ++  ++  
Sbjct: 34  NALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFF 93

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M           +P+V  Y +L+ GLCK+  V Q   LF  M+  GI  + +      
Sbjct: 94  ETMP----------EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLI 143

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  +   A  LL+LM  R  +P +++Y  ++NG C   KV+ A  LF+ M   G  
Sbjct: 144 DVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCK 203

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD  +Y+ LI+G C    + EA ++   M+ NGF+            P+  T    I+GL
Sbjct: 204 PDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQ------------PDKITFTALIEGL 251

Query: 255 CKNGHVLEVMELF-----------------------------PTLEI----SNCELFVEI 281
           C    + E   LF                             P L +      C   V +
Sbjct: 252 CTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACPEAVIL 311

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +  + R   +   F+ A+ L  K++ + +  +VV Y      LG   +  +       M 
Sbjct: 312 YTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRML 371

Query: 342 ENGCALDVDTFNTLMISFLQKE 363
           E G   D+  +N L+  F + +
Sbjct: 372 EQGIEPDMVAYNVLVDGFCKAD 393



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 132/291 (45%), Gaps = 25/291 (8%)

Query: 41  RDASQLV---KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97
           R + Q+V   +++ +  C+PN  +   L+  L RTG ++       EM            
Sbjct: 14  RRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREK------LV 67

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-INANTL---LCKKTKLVEANRLLELM 153
           P+VF Y  +ID LCK R + +  + F  M +   +  NTL   LCK  ++ +A  L   M
Sbjct: 68  PDVFTYNVVIDTLCKARRISRAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSM 127

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
              G+ P   TYT L++ +C + +   A  L   MA +   P V+SY  +ING CKN  V
Sbjct: 128 EGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKV 187

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           ++A             ++F EMKL    P+  T N  I GLC    + E  +L   +  +
Sbjct: 188 DQAY------------QLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVEN 235

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
             +     F +LI G C     + A  LF  ++ +    D+V + +L+  L
Sbjct: 236 GFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKL 286



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 112/260 (43%), Gaps = 24/260 (9%)

Query: 105 SLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQR 156
           +L+D L + R  +Q   +F  +  +    N L        LC+  K+ +A   +  M + 
Sbjct: 5   ALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMARE 64

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
            L P +FTY  +++  C   +++ AI  F++M      PDV +Y+ L+ G CKN  V +A
Sbjct: 65  KLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQA 120

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
            +            +F  M+   + P   T    ID  CK         L   +    C 
Sbjct: 121 CS------------LFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCS 168

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             V  + S+I G CK    + A +LF ++       D V YN LIH L  + ++ +   L
Sbjct: 169 PTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDL 228

Query: 337 LLSMEENGCALDVDTFNTLM 356
           L  M ENG   D  TF  L+
Sbjct: 229 LTVMVENGFQPDKITFTALI 248



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 16/205 (7%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P   +Y  L+   C  GK++ A +    MAR+  +PDVF+Y+V+I+  CK      A  
Sbjct: 32  KPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCK------ARR 85

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           +SR +      + F  M      P+  T N  + GLCKNG V +   LF ++E +     
Sbjct: 86  ISRAI------EFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPS 135

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
              + +LI   CK   FE A  L   ++ +     V +Y  +I+ L K  ++ +   L  
Sbjct: 136 DVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFE 195

Query: 339 SMEENGCALDVDTFNTLMISFLQKE 363
            M+  GC  D  T+NTL+     K+
Sbjct: 196 EMKLAGCKPDRVTYNTLIHGLCVKQ 220



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 91/219 (41%), Gaps = 35/219 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL------------- 69
           + +TF +LI+G C    I++A  L + MA  GC P++ T   L++ L             
Sbjct: 240 DKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVV 299

Query: 70  RRTGNMNLTLKLHQEMVNGMGDFGGIYK--------------PNVFCYGSLIDGLCKDRL 115
           R        + L+  +   +G   G  +              PNV  Y +   GL   + 
Sbjct: 300 RNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKE 359

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
             +    F  M ++GI  + +         CK  +L  A +++  M Q GL P I TY  
Sbjct: 360 GMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNT 419

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
           L+  +C  GKV     L  +M  +G  PDV ++S L+ G
Sbjct: 420 LVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAG 458



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 14/158 (8%)

Query: 43  ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102
           A++L++KMA  G  PNV T      GL   G+    ++ ++E    +    GI +P++  
Sbjct: 328 AARLLQKMARRGVPPNVVTYTAFFKGL---GDWKEGMRAYREFRRMLEQ--GI-EPDMVA 381

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMM 154
           Y  L+DG CK   +D  + +   M   G     +  NTL+   C+K K+     LL  M+
Sbjct: 382 YNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMV 441

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
            RG  P + T++ L+ G  +VG+ + A +  +    +G
Sbjct: 442 SRGRQPDVATWSTLVAGLFMVGQADAAYSFLNLAMSQG 479



 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           P N VT+N+L+   C +G +    +L+  M + G +P+V T  TL+ GL   G  +
Sbjct: 411 PPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQAD 466


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 166/351 (47%), Gaps = 29/351 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +V  A+  F   +R  ++  ND  TFN LI+G C  G    A +L+  M+ FGC P++ T
Sbjct: 186 RVEDAMKLFDEHLR--FQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVT 243

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI G  ++  +N   ++ +++ +G      +  P+V  Y S+I G CK   + +   
Sbjct: 244 YNTLIQGFCKSNELNKASEMFKDVKSG-----SVCSPDVVTYTSMISGYCKAGKMREASS 298

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  +M   GI    +          K  +++ A  +   M+  G  P + T+T L++GYC
Sbjct: 299 LLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYC 358

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
            VG+V+    L++ M  +G  P+ F+YS+LIN  C     E  +  +RE++         
Sbjct: 359 RVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCN----ENRLLKARELL--------G 406

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           ++   +++P+ F  N  IDG CK G V E   +   +E   C+     F  LI G C  G
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKG 466

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
               A  +F+K+       D +  + L+  L K G + KE Y L  +   G
Sbjct: 467 RMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAG-MAKEAYHLNQIARKG 516



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 24/234 (10%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           +VTFN L+ G+   G +  A ++  KM +FGC P+V T  +LI G  R G ++   +L +
Sbjct: 312 NVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWE 371

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------ 137
           EM N  G F     PN F Y  LI+ LC +  + + ++L  ++  K I     +      
Sbjct: 372 EM-NARGMF-----PNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVID 425

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             CK  K+ EAN ++E M ++   P   T+T L+ G+C+ G++  A+++F  M   G  P
Sbjct: 426 GFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSP 485

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV-PETFTCN 248
           D  + S L++   K    +EA +++         +I  + +  NVV PET T N
Sbjct: 486 DKITVSSLLSCLLKAGMAKEAYHLN---------QIARKGQSNNVVPPETKTAN 530



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 135/321 (42%), Gaps = 29/321 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N L +  C  G    A Q+ + M + G  PN      L++     G ++    L  + 
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL-------L 137
               G              SL++ L K DR+ D  K     ++ +  N           L
Sbjct: 165 FEVEG--------CCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGL 216

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF-MPD 196
           C   K  +A  LL +M   G  P I TY  L+ G+C   ++N A  +F  +       PD
Sbjct: 217 CGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPD 276

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ +I+GYCK   + EA ++  +M+  G            + P   T N+ +DG  K
Sbjct: 277 VVTYTSMISGYCKAGKMREASSLLDDMLRLG------------IYPTNVTFNVLVDGYAK 324

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +L   E+   +    C   V  F SLI G C+ G       L+ +++ + +  +   
Sbjct: 325 AGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFT 384

Query: 317 YNILIHALGKEGQIKKENYLL 337
           Y+ILI+AL  E ++ K   LL
Sbjct: 385 YSILINALCNENRLLKARELL 405


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 164/351 (46%), Gaps = 29/351 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +V  A+  F   +R  ++  ND  TFN LI+G C  G    A +L+  M+ FGC P++ T
Sbjct: 186 RVEDAMKLFEEHLR--FQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVT 243

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI G  ++      LK   EM + +    G   P+V  Y S+I G CK   + +   
Sbjct: 244 YNTLIKGFCKSNE----LKKANEMFDDVKSSSGC-SPDVVTYTSMISGYCKAGKMQEASV 298

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           L  +M   GI    +          K  ++  A  +   M+  G  P + T+T L++GYC
Sbjct: 299 LLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYC 358

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
            VG+VN    L++ M  +G  P+ F+YS+LIN  CK    E  +  +RE++         
Sbjct: 359 RVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCK----ENRLLKARELL--------G 406

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           ++   +++P+ F  N  IDG CK G V E + +   +E   C+     F  LI G C  G
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKG 466

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
               A  +F+K+       D +  + L+  L K G + KE Y L  +   G
Sbjct: 467 RMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAG-MAKEAYHLNQIAHKG 516



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 139/335 (41%), Gaps = 44/335 (13%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           NSL+        + DA +L ++   F    +  T + LI GL   G     +    E++ 
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAV----ELLG 230

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEAN 147
           GM  FG +  P++  Y +LI G CK   + +  ++F ++K                    
Sbjct: 231 GMSGFGCL--PDIVTYNTLIKGFCKSNELKKANEMFDDVKSSS----------------- 271

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
                    G +P + TYT +++GYC  GK+  A  L D M R G  P   +++VL++GY
Sbjct: 272 ---------GCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGY 322

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
            K   +  A  +  +MI  G              P+  T    IDG C+ G V +   L+
Sbjct: 323 AKAGEMHTAEEIRGKMISFG------------CFPDVVTFTSLIDGYCRVGQVNQGFRLW 370

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +           ++ LI   CK      A EL  +L+ K+++     YN +I    K 
Sbjct: 371 EEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKA 430

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           G++ +   ++  ME+  C  D  TF  L+I    K
Sbjct: 431 GKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMK 465


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 171/360 (47%), Gaps = 28/360 (7%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           S I++   P+     N+LIK F   G + +   + +KM   G  P + T + L+ GL   
Sbjct: 158 SEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSA 217

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
             ++   ++ + M +G        KP++  Y ++I G CK     +  +   +M+ +G  
Sbjct: 218 MFVDSAERVFEVMESGR------IKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHE 271

Query: 133 ANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
           A+ +            +       L + M ++G+      ++ ++ G C  GK+N    +
Sbjct: 272 ADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTV 331

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
           F++M RKG  P+V  Y+VLI+GY K+ +VE+A+ +   MI  GFK            P+ 
Sbjct: 332 FENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK------------PDV 379

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T ++ ++GLCKNG V E ++ F T       +    ++SLI G  K G  + A  LF +
Sbjct: 380 VTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEE 439

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM-EENGCALDVDTFNTLMISFLQKE 363
           +S K    D   YN LI A  K  ++ +   L   M EE GC   V T+ T+++S + KE
Sbjct: 440 MSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTY-TILLSGMFKE 498



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 134/334 (40%), Gaps = 70/334 (20%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLLCKKTKLVEANRLL 150
           Y  N+ CY SL+D L   + VD+ + +  E+K          AN L+    KL     LL
Sbjct: 130 YTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELL 189

Query: 151 EL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +   M + G+ P ++TY  L+NG      V+ A  +F+ M      PD+ +Y+ +I GY
Sbjct: 190 WVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGY 249

Query: 208 CKNFNVEEAMNVSREMILNGFK-----------------------KIFNEM--KLCNVVP 242
           CK    ++AM   R+M   G +                        ++ EM  K   V P
Sbjct: 250 CKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPP 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
             F+  + I GLCK G + E   +F  +     +  V I+  LI G  K G  E A  L 
Sbjct: 310 HAFS--LVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLL 367

Query: 303 NKLSCKNLVADVVAYNI-----------------------------------LIHALGKE 327
           +++  +    DVV Y++                                   LI  LGK 
Sbjct: 368 HRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKA 427

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           G++ +   L   M E GC  D   +N L+ +F +
Sbjct: 428 GRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 461



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 51/204 (25%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N + ++SLI G    G + +A +L ++M+  GC     T D+                 
Sbjct: 412 INSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGC-----TRDS----------------- 449

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-----DKGINANTL 136
                              +CY +LID   K R VD+   LF  M+     D+ +   T+
Sbjct: 450 -------------------YCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTI 490

Query: 137 LC----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L     K+ +  EA +L ++M+ +G+ P    +  L  G CL GKV  A  + D +A  G
Sbjct: 491 LLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMG 550

Query: 193 FMPDVFSYSVLINGYCKNFNVEEA 216
            + D  +   +IN  CK   ++EA
Sbjct: 551 VILDA-ACEDMINTLCKAGRIKEA 573


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 169/364 (46%), Gaps = 41/364 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN +I   C EG ++ A + +  M T G +PNV T +T+I G    G       + Q M
Sbjct: 218 TFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTM 277

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                D G   +P+ + Y S I GLCK+  +++   L  +M + G+  N +         
Sbjct: 278 ----KDKG--LEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGY 331

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C K  L +A    + M+ +G+   + TY   ++   + G++  A  +   M  KG MPD 
Sbjct: 332 CNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDA 391

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNE 234
            ++++LINGYC+  + + A  +  EM+  G +                        +F++
Sbjct: 392 VTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSK 451

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE--IFNSLIRGCCKF 292
           ++   ++P+    N  IDG C NG++    +L    E+ N ++  +   +N+L++G C+ 
Sbjct: 452 IQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLK--EMDNMKVLPDEITYNTLMQGYCRE 509

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  E A +L +++  + +  D ++YN LI    K G +K    +   M   G    + T+
Sbjct: 510 GKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTY 569

Query: 353 NTLM 356
           N L+
Sbjct: 570 NALI 573



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 157/335 (46%), Gaps = 26/335 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NS I G C EG + +AS L+ KM   G  PN  T + LI G    G+++       EM
Sbjct: 288 TYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEM 347

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLCKK 140
           ++  G    +   N+F +   ++G   D       ++  EM++KG     +  N L+   
Sbjct: 348 ISK-GIMASLVTYNLFIHALFMEGRMGD-----ADNMIKEMREKGMMPDAVTHNILINGY 401

Query: 141 TKLVEANR---LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            +  +A R   LL+ M+ +G+ P + TYT L+       ++  A ALF  + ++G +PD+
Sbjct: 402 CRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDI 461

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             ++ LI+G+C N N++ A  + +EM         + MK   V+P+  T N  + G C+ 
Sbjct: 462 IVFNALIDGHCANGNIDRAFQLLKEM---------DNMK---VLPDEITYNTLMQGYCRE 509

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V E  +L   ++    +     +N+LI G  K G  + A  + +++        ++ Y
Sbjct: 510 GKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTY 569

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           N LI  L K  + +    LL  M   G   D  T+
Sbjct: 570 NALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTY 604



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 114/251 (45%), Gaps = 26/251 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N  I    MEG + DA  ++K+M   G  P+  T + LI G  R G+      L  E
Sbjct: 357 VTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDE 416

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           MV      G   +P +  Y SLI  L K   + +   LF +++ +G+  + ++       
Sbjct: 417 MV------GKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDG 470

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C    +  A +LL+ M    + P   TY  L+ GYC  GKV  A  L D M R+G  PD
Sbjct: 471 HCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPD 530

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             SY+ LI+GY K  ++++A  V  EM+  GF             P   T N  I GLCK
Sbjct: 531 HISYNTLISGYSKRGDMKDAFRVRDEMMTTGFD------------PTILTYNALIQGLCK 578

Query: 257 NGHVLEVMELF 267
           N       EL 
Sbjct: 579 NQEGEHAEELL 589



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 154/342 (45%), Gaps = 26/342 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T N ++  F      + A  L  +M     R ++ T + +I  L + G     LK  +E 
Sbjct: 183 TCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGK----LKKAKEF 238

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
           +  M   G   KPNV  Y ++I G C      + + +F  MKDKG+  +        + L
Sbjct: 239 IGHMETLG--VKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGL 296

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ +L EA+ L+  M++ GL P   TY  L++GYC  G ++ A A  D M  KG M  +
Sbjct: 297 CKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASL 356

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y++ I+       + +A N+ +EM   G            ++P+  T NI I+G C+ 
Sbjct: 357 VTYNLFIHALFMEGRMGDADNMIKEMREKG------------MMPDAVTHNILINGYCRC 404

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G       L   +     +  +  + SLI    K    + A  LF+K+  + L+ D++ +
Sbjct: 405 GDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVF 464

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           N LI      G I +   LL  M+      D  T+NTLM  +
Sbjct: 465 NALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGY 506



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 30/271 (11%)

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
            L +DR+  +T  +F    D  + A    C+  K  EA     L+ ++G  P I T   +
Sbjct: 135 ALARDRVDAKTTLIF----DLLVRA---YCELKKPNEALECFYLIKEKGFVPNIETCNQM 187

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN---------- 218
           L+ +  + +  +A  L+  M R      +++++++IN  CK   +++A            
Sbjct: 188 LSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGV 247

Query: 219 ----VSREMILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
               V+   I++G          + IF  MK   + P+ +T N FI GLCK G + E   
Sbjct: 248 KPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASG 307

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L   +           +N+LI G C  G  + A    +++  K ++A +V YN+ IHAL 
Sbjct: 308 LICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALF 367

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            EG++   + ++  M E G   D  T N L+
Sbjct: 368 MEGRMGDADNMIKEMREKGMMPDAVTHNILI 398



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 66/112 (58%), Gaps = 6/112 (5%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +++T+N+L++G+C EG + +A QL+ +M   G +P+  + +TLI+G  + G+M    ++ 
Sbjct: 495 DEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVR 554

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
            EM+    D      P +  Y +LI GLCK++  +  ++L  EM  KGI  +
Sbjct: 555 DEMMTTGFD------PTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPD 600



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 12/195 (6%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L+  YC + K N A+  F  +  KGF+P++ + + +++ + K    + A           
Sbjct: 152 LVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAW---------- 201

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
              ++ EM   N+    +T NI I+ LCK G + +  E    +E    +  V  +N++I 
Sbjct: 202 --VLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIH 259

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G C  G F+ A  +F  +  K L  D   YN  I  L KEG++++ + L+  M E G   
Sbjct: 260 GHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVP 319

Query: 348 DVDTFNTLMISFLQK 362
           +  T+N L+  +  K
Sbjct: 320 NAVTYNALIDGYCNK 334



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 216 AMNVSREMILNGF---KKIFNEMKLCNVVPETFTCNIF---IDGLCKNGHVLEVMELFPT 269
           ++N+ + +IL+     + IF+E+ L     +  T  IF   +   C+     E +E F  
Sbjct: 112 SINLIQRLILSPTCTNRTIFDELALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYL 171

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           ++       +E  N ++    K    ++A  L+ ++   N+ + +  +NI+I+ L KEG+
Sbjct: 172 IKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGK 231

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           +KK    +  ME  G   +V T+NT++
Sbjct: 232 LKKAKEFIGHMETLGVKPNVVTYNTII 258


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 168/377 (44%), Gaps = 46/377 (12%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P     FN L++     G +  A  +  +M + G R  V + +T+I+G+ R G+++    
Sbjct: 237 PPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAET 296

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--- 137
           LH+ M        G+  P+V+ YG+LI GLC+   ++  + +F +M  +G+  N ++   
Sbjct: 297 LHRRMSEA-----GV-TPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTI 350

Query: 138 -----CKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                CKK    +A  +LEL   M +RG+ P   TY  ++NG C    +  A  +   M 
Sbjct: 351 LIDAHCKKG---DAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMR 407

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------------------- 228
             G  PD  +Y+ LI+GYCK   ++ AM + + M+  G                      
Sbjct: 408 SAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSA 467

Query: 229 --KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
             +++  EM    + P+  T  + ID  C+ G V   + L   ++    +  V  +N ++
Sbjct: 468 DAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIM 527

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G CK G  + A  L N +    +  D + YNIL+    K G++     L       G  
Sbjct: 528 NGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL---KSAKGTV 584

Query: 347 LDVDTFNTLMISFLQKE 363
            D+  + +++   ++K+
Sbjct: 585 PDLGVYTSIVGEIVKKK 601



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 150/357 (42%), Gaps = 40/357 (11%)

Query: 34  FCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFG 93
           +  EG + DA  LV      G R   T+C  L++   R          + +++    D G
Sbjct: 183 YAEEGLLPDACTLVLLALRRGIRLEPTSCTGLMS---RFPTAPEACAFYLQLL----DAG 235

Query: 94  GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL---LCKKTKLVE 145
               P    +  L+  L +   +   +++F EM+ +G+       NT+   +C+   L  
Sbjct: 236 --LPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDG 293

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  L   M + G+ P ++TY  L+ G C VG++  A  +F+ M  +G  P+   +++LI+
Sbjct: 294 AETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILID 353

Query: 206 GYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMKLCNVVP 242
            +CK  + E  + + REM              I+NG            I  EM+   + P
Sbjct: 354 AHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRP 413

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +T T    IDG CK   +   ME+   +      L    + +LI G  K G    A  + 
Sbjct: 414 DTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVL 473

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            ++    L  D   Y ++I A  ++G +K    LL  M+  G    V T+N +M  F
Sbjct: 474 GEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGF 530



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 12/211 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           ++  GL P    +  L+     +G++  A  +FD M  +G    V S++ +I+G C+  +
Sbjct: 231 LLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGD 290

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                       L+G + +   M    V P+ +T    I GLC+ G + +   +F  +  
Sbjct: 291 ------------LDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCG 338

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
              +    +F  LI   CK G  E   EL  ++  + +  D V YN +++ L +   +K 
Sbjct: 339 RGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKS 398

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            + +++ M   G   D  T+ TL+  + ++E
Sbjct: 399 ASGIVVEMRSAGLRPDTVTYTTLIDGYCKEE 429


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 172/381 (45%), Gaps = 45/381 (11%)

Query: 9   MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           M +    R  + P N  T+N L+K  C    +  A +L+ +M+  GC PN  +  T+I+ 
Sbjct: 166 MVYRDMKRDGFEP-NVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISS 224

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           +   G           MV         ++P V  Y +LI+GLCK+R      +L  EM +
Sbjct: 225 MCEVG-----------MVKEGRQLAERFEPVVSVYNALINGLCKERDYKGGVELMSEMVE 273

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           KGI+ N +        L    ++  A  LL  M++RG +P I T + L+ G  + G    
Sbjct: 274 KGISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFD 333

Query: 181 AIALFDSMARK-GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------IL 225
           A+ +++ M R  G  P+V +Y+ L+ G+C + N+++A++V   M              ++
Sbjct: 334 ALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLI 393

Query: 226 NGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           NGF K         I+N+M      P        ++ LC++    E   L   +   NC 
Sbjct: 394 NGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCA 453

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-NLVADVVAYNILIHALGKEGQIKKENY 335
             V  FN+ I+G C  G  + A ++F ++  +     ++V YN L+  L K  +I++   
Sbjct: 454 PSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYG 513

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           L   +   G      T+NTL+
Sbjct: 514 LTREIFMRGVEWSTSTYNTLL 534



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 154/362 (42%), Gaps = 43/362 (11%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F S+I  +   G    A ++  ++  FGC P+V   + ++  L     + +   ++++M 
Sbjct: 113 FISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMK 172

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
                    ++PNVF Y  L+  LCK+  VD  K L +EM +KG   N +        +C
Sbjct: 173 RDG------FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMC 226

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   + E  +L E        PV+  Y  L+NG C        + L   M  KG  P+V 
Sbjct: 227 EVGMVKEGRQLAER-----FEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVI 281

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------IFNEMKLCN-- 239
           SYS LIN    +  +E A ++  +M+  G                     F+ + + N  
Sbjct: 282 SYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQM 341

Query: 240 -----VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                + P     N  + G C +G++ + + +F  +E   C   +  + SLI G  K G 
Sbjct: 342 IRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGS 401

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A  ++NK+       +VV Y  ++ AL +  + K+   L+  M +  CA  V TFN 
Sbjct: 402 LEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNA 461

Query: 355 LM 356
            +
Sbjct: 462 FI 463



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 140/323 (43%), Gaps = 24/323 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++++LI      G I  A  L+ +M   GC PN+ T  +L+ G    G     L + 
Sbjct: 279 NVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMW 338

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M+ G G      +PNV  Y +L+ G C    +D+   +F+ M++ G + N        
Sbjct: 339 NQMIRGFG-----LQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLI 393

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K+  L  A  +   M+  G  P +  YT ++   C   K   A +L + M+++   
Sbjct: 394 NGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCA 453

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P V +++  I G C    ++ A  V R+M          +   C   P   T N  +DGL
Sbjct: 454 PSVPTFNAFIKGLCDAGRLDWAEKVFRQM---------EQQYRCP--PNIVTYNELLDGL 502

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K   + E   L   + +   E     +N+L+ G C  G+  IA +L  K+       D 
Sbjct: 503 AKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDE 562

Query: 315 VAYNILIHALGKEGQIKKENYLL 337
           +  N++I A  K+G+ ++   +L
Sbjct: 563 ITMNMIILAYCKQGKAERAVQML 585



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 151/347 (43%), Gaps = 32/347 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TF  +I+   M+G +     L+++M   G   +     ++I+  R+ G     +    E
Sbjct: 76  LTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAV----E 131

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M   + +FG    P+V  Y  ++D L  +  +     ++ +MK  G   N          
Sbjct: 132 MFYRIKEFGC--DPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKA 189

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+  A +LL  M  +G  P   +YT +++  C VG V     L +      F P 
Sbjct: 190 LCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAER-----FEPV 244

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V  Y+ LING CK  + +  + +  EM+  G            + P   + +  I+ L  
Sbjct: 245 VSVYNALINGLCKERDYKGGVELMSEMVEKG------------ISPNVISYSTLINELSN 292

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL-SCKNLVADVV 315
           +G +     L   +    C   +   +SL++GC   G    A +++N++     L  +VV
Sbjct: 293 SGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVV 352

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           AYN L+      G I K   + L MEE GC+ ++ T+ +L+  F ++
Sbjct: 353 AYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKR 399



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 139/321 (43%), Gaps = 48/321 (14%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  +   IR      N V +N+L++GFC  GNI  A  +   M   GC PN+ T  +LI
Sbjct: 334 ALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLI 393

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G++   + +  +M+      G    PNV  Y S+++ LC+              
Sbjct: 394 NGFTKRGSLEGAVYIWNKMLTS----GCC--PNVVVYTSMVEALCRH------------- 434

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                         +K  EA  L+E+M +    P + T+   + G C  G+++ A  +F 
Sbjct: 435 --------------SKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFR 480

Query: 187 SMARK-GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
            M ++    P++ +Y+ L++G  K   +EEA  ++RE+ + G            V   T 
Sbjct: 481 QMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRG------------VEWSTS 528

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T N  + G C  G     ++L   + ++         N +I   CK G  E A ++ + +
Sbjct: 529 TYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQMLDLV 588

Query: 306 SC--KNLVADVVAYNILIHAL 324
           SC  +    DV++Y  +I  L
Sbjct: 589 SCGRRKWRPDVISYTNVIWGL 609



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 19/214 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + S+++  C     ++A  L++ M+   C P+V T +  I GL   G ++   K+ 
Sbjct: 420 NVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVF 479

Query: 83  QEMVNGMGDFGGIYK--PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NT 135
           ++M          Y+  PN+  Y  L+DGL K   +++   L  E+  +G+       NT
Sbjct: 480 RQMEQQ-------YRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNT 532

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD--SMAR 190
           LL   C       A +L+  MM  G +P   T   ++  YC  GK   A+ + D  S  R
Sbjct: 533 LLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQMLDLVSCGR 592

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           + + PDV SY+ +I G C++   E+ + +   MI
Sbjct: 593 RKWRPDVISYTNVIWGLCRSNCREDGVILFERMI 626


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 164/349 (46%), Gaps = 29/349 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMAT-FGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           N+ T+N ++ G C       A +++K+M       P++ T  T+I G  + G M+   ++
Sbjct: 8   NERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEI 67

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------- 134
            +EMV   G       P+V  Y S++DGLC+D  +D+  ++  EMK KG+  +       
Sbjct: 68  LREMVTRDG-----MAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSAL 122

Query: 135 -TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK-- 191
            T  C   K+ EA +L + ++         + + L+ G C   ++  A  LF  M  +  
Sbjct: 123 ITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMRED 182

Query: 192 -GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
             + PDV +Y+ LI+G+CK+ N+E+AM            K+   M+    VP   T +  
Sbjct: 183 GAWKPDVVTYTALIDGFCKSGNLEKAM------------KMLGVMEGRKCVPNVVTYSSL 230

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           + GLCK G + + ++LF  +    C   V  + +LI G C     + A  L ++++    
Sbjct: 231 LHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCC 290

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            AD V+YN L+    + G+I++   L   M    C  D  T+  L+  F
Sbjct: 291 PADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGF 339



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 144/298 (48%), Gaps = 36/298 (12%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---------CKKTKLVEANR 148
           PN   Y  +++GLCK RL  +  ++  EM+D    A  L+         CK+ ++  A  
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 149 LLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           +L  M+ R G+ P + TYT +++G C  GK++ A  +   M  KG  PD F++S LI G+
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 208 CKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCN---VV 241
           C    V+EA+ + +E++ +  +                       ++F EM++       
Sbjct: 127 CNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWK 186

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+  T    IDG CK+G++ + M++   +E   C   V  ++SL+ G CK G  + A +L
Sbjct: 187 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 246

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           F +++ K  V +VV Y  LIH L    ++     L+  M    C  D  ++N L+  +
Sbjct: 247 FRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGY 304



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 149/314 (47%), Gaps = 24/314 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF++LI G+C    + +A +L K++ T  CR +  +   LITGL R   +    +L QEM
Sbjct: 118 TFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEM 177

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
              M +  G +KP+V  Y +LIDG CK   +++   +   M+ +    N +        L
Sbjct: 178 --EMRE-DGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGL 234

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK   L +A  L   M  +G  P + TYT L++G C   KV+ A  L D M       D 
Sbjct: 235 CKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADT 294

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            SY+ L++GYC+   +EEA            K++F EM   + +P+  T    + G C  
Sbjct: 295 VSYNALLDGYCRLGRIEEA------------KQLFKEMAAKSCLPDRITYTCLVRGFCNA 342

Query: 258 GHVLEVMELFPTLEI-SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             + E   L   ++  +  +  V  ++ ++ G  +   F  A+E   ++  +N+  + V 
Sbjct: 343 SRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVT 402

Query: 317 YNILIHALGKEGQI 330
           Y+ LI  L K G++
Sbjct: 403 YSSLIDGLCKAGRV 416



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 159/341 (46%), Gaps = 35/341 (10%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           ++P + VT+ +LI GFC  GN+  A +++  M    C PNV T  +L+ GL + G+++  
Sbjct: 185 WKP-DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQA 243

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           L L + M +     G +  PNV  Y +LI GLC    VD  + L  EM      A+T+  
Sbjct: 244 LDLFRRMTSK----GCV--PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSY 297

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM-A 189
                  C+  ++ EA +L + M  +   P   TYT L+ G+C   ++  A  L ++M  
Sbjct: 298 NALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKT 357

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGF---KKIF 232
             G  PDV +YS+++ GY +     EA    +EMI              ++G     ++ 
Sbjct: 358 AAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVN 417

Query: 233 NEMKLCNVV--PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           + M++   V  P+  T  I I+GLC      E + L   +     E  V  FNS+I   C
Sbjct: 418 HAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALC 477

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
           + G  + A +L   ++   L   +V Y  L+    + G+++
Sbjct: 478 RLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRME 518



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 153/359 (42%), Gaps = 43/359 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT++SL+ G C  G++  A  L ++M + GC PNV T  TLI GL     ++    L 
Sbjct: 223 NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLM 282

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM             +   Y +L+DG C+   +++ K LF EM  K    + +      
Sbjct: 283 DEMT------ATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLV 336

Query: 137 --LCKKTKLVEANRLLELM-MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              C  ++L EA  LLE M    G++P + TY+ ++ GY    +   A      M  +  
Sbjct: 337 RGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNV 396

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNV----------SREMILNGF---------KKIFNE 234
            P+  +YS LI+G CK   V  AM V          +  +++ G            +  E
Sbjct: 397 APNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEE 456

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    V P   T N  I  LC+ G + E  +L   +     E  +  + +L+ G  + G 
Sbjct: 457 MVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGR 516

Query: 295 FEIASELFNKL--------SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
            EIA ELF  +        S  NLV +  A++ LI  L K  +I K   ++  +    C
Sbjct: 517 MEIAYELFEVMRRKAKKSSSAANLVPE-QAFSALIRGLCKAREIDKAMAVVEELRSREC 574



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 16/289 (5%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           + +T+  L++GFC    + +A  L++ M T  G  P+V T   ++ G  R        + 
Sbjct: 328 DRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEF 387

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----L 137
            QEM+           PN   Y SLIDGLCK   V+   ++   +    +   T+    L
Sbjct: 388 IQEMI------ARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGL 441

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +  EA  LLE M+ + + P + T+  ++   C +G ++ A  L  +MA  G  P +
Sbjct: 442 CGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGM 501

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ L+ G+ +       M ++ E+     +K        N+VPE    +  I GLCK 
Sbjct: 502 VTYTTLLEGFSRTGR----MEIAYELFEVMRRKAKKSSSAANLVPEQ-AFSALIRGLCKA 556

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
             + + M +   L    CE   E   +++ G  + G  E A +L N +S
Sbjct: 557 REIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSIS 605



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 90/230 (39%), Gaps = 63/230 (27%)

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---------------ILNGFKK---- 230
           R+   P+  +Y+V++NG CK     +A  V +EM               ++NGF K    
Sbjct: 2   REFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEM 61

Query: 231 -----------------------------------------IFNEMKLCNVVPETFTCNI 249
                                                    +  EMKL  V P+ FT + 
Sbjct: 62  DRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSA 121

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            I G C    V E ++L+  +  S+C L     ++LI G C+      A ELF ++  + 
Sbjct: 122 LITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMRE 181

Query: 310 LVA---DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             A   DVV Y  LI    K G ++K   +L  ME   C  +V T+++L+
Sbjct: 182 DGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLL 231


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 166/369 (44%), Gaps = 37/369 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +L+ G C         +++ +M   G  P+      LI GL + G++        E
Sbjct: 296 VTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAF----E 351

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLLC-- 138
           ++N +G  G +  PN+F Y S+I+ LCK   +++ + LF  M ++G+N N    T+L   
Sbjct: 352 LLNKVGKLGVV--PNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDG 409

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             ++ KL  A      M++ G++  +++Y  ++N  C  GK+ +A  LF  M  KG  P 
Sbjct: 410 FGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPT 469

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFN 233
           V +Y+ LI+GYCK+  V +A  +  EM   G                         K+F+
Sbjct: 470 VATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFD 529

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM    ++P   T N+ I+G C+ G+     EL   +           +  LI G C  G
Sbjct: 530 EMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTG 589

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A E  N L  K+   D + Y  L+    KEG+IK+       M   G  +D+ ++ 
Sbjct: 590 RVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYA 649

Query: 354 TLMISFLQK 362
            L+   L +
Sbjct: 650 VLISGALNQ 658



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 175/426 (41%), Gaps = 73/426 (17%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T K+  A + F     R   P NDVT+  LI GF     +  A     KM   G    V 
Sbjct: 378 TGKLEEAELLFSVMAERGLNP-NDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVY 436

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           + +++I    + G M +   L +EMV    D G   KP V  Y SLI G CKD LV +  
Sbjct: 437 SYNSMINCQCKFGKMKMAELLFKEMV----DKG--LKPTVATYTSLISGYCKDGLVPKAF 490

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRL----------------------- 149
            L+ EM  KGI  NT+        LC+  K+ EA++L                       
Sbjct: 491 KLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGH 550

Query: 150 ------------LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
                       L+ M+++GL+P  +TY PL+ G C  G+V+ A    + +  K    D 
Sbjct: 551 CREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDE 610

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK----------------------KIFNEM 235
             Y+ L+ G+CK   ++EA+   +EM+  G +                      ++  EM
Sbjct: 611 LCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRILFELLREM 670

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               + P+     I IDG  K+G++ +  E +  +           + +L+ G  K G  
Sbjct: 671 HGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYV 730

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
             A  LF ++     + + + Y   +  L KEG ++    L  +M +   A  V T+N L
Sbjct: 731 NEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFANTV-TYNIL 789

Query: 356 MISFLQ 361
           +  + Q
Sbjct: 790 IRGYCQ 795



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 156/341 (45%), Gaps = 26/341 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VT+N LI+G C EGN   A +L+ +M   G  P+  T   LI GL  TG ++      
Sbjct: 539 NEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEA---- 594

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---LCK 139
           +E +N +       + +  CY +L+ G CK+  + +      EM  +G+  + +   +  
Sbjct: 595 KEFINDLHH--KHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLI 652

Query: 140 KTKLVEANR----LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
              L + +R    LL  M  +G+ P    YT L++G+   G +  A   +  M  +G++P
Sbjct: 653 SGALNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVP 712

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           +  +Y+ L+NG  K   V EA            K +F  M +   +P   T   F+D L 
Sbjct: 713 NSVTYTALVNGLFKAGYVNEA------------KLLFKRMLVGEAIPNHITYGCFLDHLT 760

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G++   ++L   + +         +N LIRG C+ G F+ A++L + +    +V D +
Sbjct: 761 KEGNMENALQLHNAM-LQGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCI 819

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            Y+  I+   K G +     +   M + G   D   FN L+
Sbjct: 820 TYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLI 860



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 152/349 (43%), Gaps = 26/349 (7%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+  +   F+ LI+ +     + D   +V  M  +G  P V T   L+  L R       
Sbjct: 150 YKFSSSSGFDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQV 209

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           L+L   +VN      G+ KP+ + Y  ++  LC+ +  ++ K++  + +  G + + +  
Sbjct: 210 LELFDTLVN-----AGV-KPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTY 263

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LCK  ++ EA  +   + ++GL   + TY  L+ G C + +  V + + D M  
Sbjct: 264 NVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIE 323

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G++P   + S LI G  K  ++E A             ++ N++    VVP  F  N  
Sbjct: 324 LGYVPSEAAVSGLIEGLIKMGSIEGAF------------ELLNKVGKLGVVPNLFVYNSM 371

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           I+ LCK G + E   LF  +           +  LI G  +    ++A   FNK+    +
Sbjct: 372 INSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGI 431

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            A V +YN +I+   K G++K    L   M + G    V T+ +L+  +
Sbjct: 432 SATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGY 480



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 120/290 (41%), Gaps = 61/290 (21%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDA----------------------------------S 44
           ++ L+++ + +L++GFC EG I++A                                   
Sbjct: 605 HQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRILF 664

Query: 45  QLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYG 104
           +L+++M   G +P+      LI G  ++GN+    +    M+      G  Y PN   Y 
Sbjct: 665 ELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMI------GEGYVPNSVTYT 718

Query: 105 SLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQR 156
           +L++GL K   V++ K LF  M       N +        L K+  +  A +L   M+Q 
Sbjct: 719 ALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQG 778

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
                + TY  L+ GYC +GK   A  L D M   G +PD  +YS  I  YCK  NV+ A
Sbjct: 779 SFANTV-TYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAA 837

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           M++   M+  G K            P+    N  I   C NG +   ++L
Sbjct: 838 MDMWECMLQRGLK------------PDRVVFNFLIHACCLNGELDRALQL 875



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 15/215 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++V +  LI GF   GN++ A +    M   G  PN  T   L+ GL + G +N    L 
Sbjct: 678 DNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLF 737

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + M+ G         PN   YG  +D L K+  ++    L   M  +G  ANT+      
Sbjct: 738 KRMLVGEA------IPNHITYGCFLDHLTKEGNMENALQLHNAML-QGSFANTVTYNILI 790

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+  K  EA +LL++M+  G+ P   TY+  +  YC  G V+ A+ +++ M ++G  
Sbjct: 791 RGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLK 850

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           PD   ++ LI+  C N  ++ A+ +  +M+L G K
Sbjct: 851 PDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLK 885



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 16/194 (8%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y P N VT+ +L+ G    G + +A  L K+M      PN  T    +  L + GNM   
Sbjct: 710 YVP-NSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENA 768

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INA 133
           L+LH  M+ G   F      N   Y  LI G C+     +   L   M   G     I  
Sbjct: 769 LQLHNAMLQG--SFA-----NTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITY 821

Query: 134 NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           +T +   CK+  +  A  + E M+QRGL P    +  L++  CL G+++ A+ L + M  
Sbjct: 822 STFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMML 881

Query: 191 KGFMPDVFSYSVLI 204
           +G  P   +Y  L+
Sbjct: 882 RGLKPTQSTYHSLM 895


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 158/349 (45%), Gaps = 45/349 (12%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EG IR A  +   +  +G RP+V + 
Sbjct: 107 KYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSF 166

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M        G+ +P+V+ Y  LI+GLCK+  +D     
Sbjct: 167 NTLMNGYIRLGDLDEGFRLKSAM-----HASGV-EPDVYTYSVLINGLCKESKIDG---- 216

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                                  AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 217 -----------------------ANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAM 253

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +    D+ +Y+ LI G CK  ++++A N+  EM + G K            P
Sbjct: 254 EIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLK------------P 301

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L   ++ +LI G C+ G    A ++ 
Sbjct: 302 DKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKML 361

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            ++    L  D   Y ++I+   K+G +   + LL  M+ +G    V T
Sbjct: 362 REMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 153/344 (44%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 61  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCKKVLEHLMKLKYFKLVWGFYKEIL 120

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 121 ECG------YPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYI 174

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 175 RLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGV 234

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++  +  T N  I GLCK G
Sbjct: 235 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSADLITYNTLIYGLCKKG 282

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L   + +   +     + +LI GCCK G  E A E   ++  +N+  D V Y 
Sbjct: 283 DLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYT 342

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 343 TLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 386



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 15/206 (7%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+ GA   F   + +   P N VTF +LI G C  G +  A ++ K+M +     ++ T
Sbjct: 212 SKIDGANELFDEMLDKGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLIT 270

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI GL + G+    LK  Q +++ M   G   KP+   Y +LIDG CK+  ++   +
Sbjct: 271 YNTLIYGLCKKGD----LKQAQNLIDEMRMKG--LKPDKITYTTLIDGCCKEGDLETAFE 324

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
               M  + I  + +        LC++ + V+A ++L  M+  GL P   TYT ++N +C
Sbjct: 325 HRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFC 384

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFS 199
             G V     L   M R G +P V +
Sbjct: 385 KKGDVWTGSKLLKEMQRDGHVPSVVT 410


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 160/342 (46%), Gaps = 45/342 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EG +R A  +   +  +G RP+V + 
Sbjct: 115 KYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSF 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL++G  R G+++   +L   M        G+ +P+V+ Y  LI+GLCK+         
Sbjct: 175 NTLMSGYIRLGDLDEGFRLKSAM-----HASGV-QPDVYTYSVLINGLCKE--------- 219

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ EAN L   M+  GL P   T+T L++G+C  G+V++A+
Sbjct: 220 ------------------SKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAM 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  +  +GF PD+ +Y+ LI G CK  ++++A    R++I        +EM +  + P
Sbjct: 262 EIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQA----RDLI--------DEMSMKELKP 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G    A ++ 
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             +    L  D   Y ++I+   K+G +K  + LL  M  +G
Sbjct: 370 RGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDG 411



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 154/344 (44%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G IRDA +  +            TC  ++  L +     L    ++E++
Sbjct: 69  FSGLITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKT 141
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYI 182

Query: 142 KL---VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +L    E  RL   M   G+ P ++TY+ L+NG C   K++ A  LF+ M   G +P+  
Sbjct: 183 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++++  GF             P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQLLSQGFS------------PDLITYNTLIFGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D VAY 
Sbjct: 291 DLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 351 ALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKK 394



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 14/181 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K++ + G  P++ T +TLI GL + G++     L 
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLI 299

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM   M +     KP+   Y +LIDG CK+  ++   +    M  + I  + +      
Sbjct: 300 DEM--SMKEL----KPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALI 353

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + V+A ++L  M+  GL P   TYT ++N +C  G V     L   M R G +
Sbjct: 354 SGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHV 413

Query: 195 P 195
           P
Sbjct: 414 P 414


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 162/347 (46%), Gaps = 31/347 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N  T+ +LI   C    + +A  L+  M + G  P     + +I GL R G +   L +
Sbjct: 78  VNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGV 137

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTLL--- 137
           +++M +        + P+   Y  L+ GL K  RL D  + L   +  + +  NT L   
Sbjct: 138 YRQMNDA-------HPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVV 190

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF-DSMARKG 192
               C   ++ +A  L+E M+ RG+     TY+ L++G C   +++ A+AL    + R+G
Sbjct: 191 VQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRG 250

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F PD+ +YS +I+G CK   + +A++            IF EM   +  P   T N  I 
Sbjct: 251 FTPDIVTYSTVIDGLCKAGRLRDAVD------------IFEEM---SCAPTAITYNSLIG 295

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G C+ G + E + L   +   NC   V  + +L+   CK G  + A ELF ++    L  
Sbjct: 296 GYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSP 355

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           DVV +  L+  L  EG+++    LL  +   GC   + T+N ++  +
Sbjct: 356 DVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGY 402



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 156/336 (46%), Gaps = 51/336 (15%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
            G   RR + P + VT++++I G C  G +RDA  + ++M+   C P   T ++LI G  
Sbjct: 243 LGEVTRRGFTP-DIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYC 298

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R G+M+  ++L  +MV+          P+V  Y +L+   CK   +D   +LF +M    
Sbjct: 299 RAGDMDEAIRLLGKMVDDN------CAPDVITYTTLMSAFCKMGRLDDAYELFQQMV--- 349

Query: 131 INANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                          AN+L         +P + T+T L++G C  G++  A+ L + + R
Sbjct: 350 ---------------ANKL---------SPDVVTFTSLVDGLCGEGRMEDALELLEEITR 385

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           +G  P +++Y+ +++GYCK+  V +A  +  +    GF            VP T T NI 
Sbjct: 386 RGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGF------------VPNTVTYNIL 433

Query: 251 IDGLCKNGHVLEVMELFPTL--EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           + G C+ G   + ++    L  E   C   V ++  ++   C+ G  + A + + ++  +
Sbjct: 434 VAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQR 493

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             V     +  ++ AL K  Q ++ + LL  M + G
Sbjct: 494 GYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYG 529



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 154/350 (44%), Gaps = 35/350 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRD-ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           P +  TF  +++G      +R     L+ ++   G  P+    +T++  L    +    +
Sbjct: 7   PSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAM 66

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-- 137
            L     + M + G +   N   Y +LI  LCK RL+D+   L ++MK +G+N  TLL  
Sbjct: 67  AL----FDKMAELGAV---NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHN 119

Query: 138 ------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 C+  +L  A  +    M     P   TYT L++G    G++  A+ +   M   
Sbjct: 120 VVIGGLCRAGRLRHALGVYR-QMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSA 178

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
             +PD  + +V++   C    V++A  +  EM+  G                  T +  +
Sbjct: 179 RHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAA------------NAITYSALV 226

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKN 309
           DGLCK   + E + L    E++      +I  ++++I G CK G    A ++F ++SC  
Sbjct: 227 DGLCKCERLDEAVALL-LGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSC-- 283

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
                + YN LI    + G + +   LL  M ++ CA DV T+ TLM +F
Sbjct: 284 -APTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAF 332



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 16/211 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF SL+ G C EG + DA +L++++   GC P + T + ++ G  ++      ++  +E
Sbjct: 358 VTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQ----VRKAEE 413

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------- 135
           +V      G  + PN   Y  L+ G C+    DQ      ++  +G    T         
Sbjct: 414 LVADFRSRG--FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIIL 471

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +  +A +  E M+QRG  P   T+  ++   C   +   A  L + M + G  
Sbjct: 472 DALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHT 531

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           P   +   +++ YC+   +++A  ++ E+ L
Sbjct: 532 PGPGTCDAVVSAYCRAGMIQKADELASELRL 562


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 158/332 (47%), Gaps = 31/332 (9%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP + VTF +L+ G C EG +  A  LV +M   G +P      T+I GL + G+    L
Sbjct: 7   RP-DVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPY----GTIINGLCKMGDTESAL 61

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            L  +M           K +V  Y ++ID LCKD      ++LF EM DKGI  + +   
Sbjct: 62  NLLSKMEETH------IKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYS 115

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 C+  +  +A +LL  M++R +NP + T++ L+N     GKV+ A  ++  M R+
Sbjct: 116 GMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRR 175

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P   +Y+ +I+G+CK               LN  K++ + M   +  P+  T +  I
Sbjct: 176 GIFPTTITYNSMIDGFCKQDR------------LNDAKRMLDSMASKSCSPDVVTFSTLI 223

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +G CK   V   ME+F  +           + +LI G C+ G  + A +L N +    + 
Sbjct: 224 NGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVA 283

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            + + +  ++ +L  + +++K   +L  ++++
Sbjct: 284 PNYITFQSMLASLCSKKELRKAFAILEDLQKS 315



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 147/322 (45%), Gaps = 30/322 (9%)

Query: 50  MATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109
           M   GCRP+V T  TL+ GL   G +   L L   MV         ++P    YG++I+G
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEG------HQP----YGTIING 50

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPV 161
           LCK    +   +L  +M++  I A+ +        LCK    + A  L   M  +G+ P 
Sbjct: 51  LCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPD 110

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           + TY+ +++ +C  G+   A  L   M  +   PDV ++S LIN   K   V EA  +  
Sbjct: 111 VITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYG 170

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
           +M+  G            + P T T N  IDG CK   + +   +  ++   +C   V  
Sbjct: 171 DMLRRG------------IFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVT 218

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           F++LI G CK    +   E+F ++  + +VA+ V Y  LIH   + G +     LL  M 
Sbjct: 219 FSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMI 278

Query: 342 ENGCALDVDTFNTLMISFLQKE 363
            +G A +  TF +++ S   K+
Sbjct: 279 SSGVAPNYITFQSMLASLCSKK 300


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 181/420 (43%), Gaps = 73/420 (17%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F    +    P N VT+++LI G C  G + +A  L+++M   G  P   TC   I
Sbjct: 439 ALQVFNQMAKEGCEP-NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 497

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             L   G      +L  +M N   +      PNV+ Y +LI GLC   L+     LF  M
Sbjct: 498 IALCDMGCYEDAWRLFVDMKNKGCE------PNVYTYTALISGLCVSGLLKVAIGLFHRM 551

Query: 127 KDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G+  NT        +L +  ++  A  +L LM + GL   I TY  ++ GYC++G  
Sbjct: 552 SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDP 611

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREMI 224
             A+ + ++M ++G   ++ +Y+ +I GYC + N   A+ +              S   +
Sbjct: 612 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 671

Query: 225 LNGFKKI---------FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           + GF KI         FNEM    + P   T    IDG CK+  +     L   ++ S C
Sbjct: 672 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 731

Query: 276 ELFVEIFNSLIR-----------------------------------GCCKFGIFEIASE 300
              V+ +N LI                                    G CK G   +A E
Sbjct: 732 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 791

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           +FNK+  +  + +++ Y+ LI ALG+EG++++   L   +E +G   D  T+  ++ +++
Sbjct: 792 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 851



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 168/365 (46%), Gaps = 37/365 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + +N++I   C +GN+ DA  ++KK+      P+  T  ++I G  R  +++  L++ 
Sbjct: 384 NLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVF 443

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANT----- 135
            +M     +      PN   Y +LI+GLC    V++  DL  EM   GI   A+T     
Sbjct: 444 NQMAKEGCE------PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 497

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC      +A RL   M  +G  P ++TYT L++G C+ G + VAI LF  M+R G  
Sbjct: 498 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF 557

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-FKKI--FNEM---------------K 236
           P+  +Y+ LIN   +N  ++ A  V   M  NG F  I  +NEM                
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLV 617

Query: 237 LCNVVPETFTCNI-----FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           + N++    + N+      I G C +G+    + +   +    C+     +  LI G CK
Sbjct: 618 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 677

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               E A  LFN++    L  + V Y  LI    K+ ++     LL  M+ +GC  +V T
Sbjct: 678 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 737

Query: 352 FNTLM 356
           +N L+
Sbjct: 738 YNVLI 742



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 135/268 (50%), Gaps = 20/268 (7%)

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           +F Y +L+  L +  +     D +  M  +G+  N L        LCK   + +A  +++
Sbjct: 350 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 409

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            + +  ++P  FTYT ++ G+C    ++ A+ +F+ MA++G  P+  +YS LING C + 
Sbjct: 410 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG 469

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            V EA ++ REMIL+G            ++P   TC   I  LC  G   +   LF  ++
Sbjct: 470 RVNEAFDLIREMILHG------------ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 517

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
              CE  V  + +LI G C  G+ ++A  LF+++S   +  + V YN LI+ L +  +IK
Sbjct: 518 NKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIK 577

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
               +L  M  NG   ++ T+N ++  +
Sbjct: 578 YAFVVLNLMGRNGLFTNIVTYNEMIKGY 605



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 177/412 (42%), Gaps = 66/412 (16%)

Query: 7    ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
            A++   + ++R +   N VT+N++IKG+C  GN   A +++  M   GC+P+  +   LI
Sbjct: 614  AMLVMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 672

Query: 67   TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             G  +   M     L  EMV+      G+  PN   Y +LIDG CKD  +D    L   M
Sbjct: 673  CGFCKISKMESAFGLFNEMVDD-----GLC-PNEVTYTALIDGYCKDEKLDTATSLLEHM 726

Query: 127  KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            K  G   N          L K+     A  L ++M++ G+ P + TYT +++G C  G  
Sbjct: 727  KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 786

Query: 179  NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---------- 228
            ++A+ +F+ M  +G +P++ +YS LI    +   VEEA N+  E+  +G           
Sbjct: 787  SLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKM 846

Query: 229  ----------KKIFN---EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL--FPTLEIS 273
                      +  FN    M      P  +T  + I GL KN ++L    L   P + + 
Sbjct: 847  IEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-KNEYLLADQRLAALPDV-VP 904

Query: 274  NCE------------------------LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            NC                         L V++ N+L+      G +  A+EL   +  + 
Sbjct: 905  NCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQG 964

Query: 310  LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            L  D  AYN L+ +L +   +     +   M   GC + ++ +  L+ +  Q
Sbjct: 965  LCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQ 1016


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 151/321 (47%), Gaps = 26/321 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N ++ G C EG + DA + +K + ++GC PN  + + ++ GL             +E
Sbjct: 231 VTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDA----EE 286

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++  MG  G    PNV  +  LI  LC+  LV+   ++  ++   G + N+L        
Sbjct: 287 LMGEMGQKG--CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHA 344

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+ +A   L+LM+ RG  P I +Y  LL   C  G+V+VA+ L   +  KG  P 
Sbjct: 345 FCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPV 404

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + SY+ +I+G  K    +EA+ +  EM+  G +            P+  T +    GLC+
Sbjct: 405 LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ------------PDIITYSTIAAGLCR 452

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + + +  F  ++         ++N++I G CK      A +LF  +     + +   
Sbjct: 453 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 512

Query: 317 YNILIHALGKEGQIKKENYLL 337
           Y ILI  L  EG IK+   LL
Sbjct: 513 YTILIEGLAYEGLIKEARDLL 533



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 29/347 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           + +N+++ G+C  G +  A +   + A      +  TCDTLI GL   G     L +  E
Sbjct: 129 MAYNAMMAGYCGAGQVDAARRWCAERAV---ERDAYTCDTLIRGLCGRGRTANALAVLDE 185

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+           P+V  Y  L++  CK     Q   L  EM+DKG   + +        
Sbjct: 186 MLRRR------CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 239

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C++ ++ +A   L+ +   G  P   +Y  +L G C   +   A  L   M +KG  P+
Sbjct: 240 ICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPN 299

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V ++++LI+  C+   VE A+ V  ++   G          C+  P + + N  +   CK
Sbjct: 300 VVTFNMLISFLCRKGLVEPALEVLEQIPKYG----------CS--PNSLSYNPLLHAFCK 347

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + + M     +    C   +  +N+L+   C+ G  ++A EL ++L  K     +++
Sbjct: 348 QKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLIS 407

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           YN +I  L K G+ K+   LL  M   G   D+ T++T+     +++
Sbjct: 408 YNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRED 454



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 145/334 (43%), Gaps = 32/334 (9%)

Query: 31  IKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMG 90
           ++     G + +A +LV        RP+  TC  LI  L  +G          E    + 
Sbjct: 74  LRSLVRRGELDEALRLVGSAR----RPDAGTCAALIKKLSASGRT-------AEARRVLA 122

Query: 91  DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME--MKDKGINANTL---LCKKTKLVE 145
             G    P+V  Y +++ G C    VD  +    E  ++      +TL   LC + +   
Sbjct: 123 ACG----PDVMAYNAMMAGYCGAGQVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTAN 178

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  +L+ M++R   P + TYT LL   C       A+ L D M  KG  PD+ +Y+V++N
Sbjct: 179 ALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVN 238

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G C+   V++A+   + +   G +            P T + NI + GLC      +  E
Sbjct: 239 GICQEGRVDDAIEFLKNLPSYGCE------------PNTVSYNIVLKGLCTAERWEDAEE 286

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L   +    C   V  FN LI   C+ G+ E A E+  ++       + ++YN L+HA  
Sbjct: 287 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFC 346

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           K+ ++ K    L  M   GC  D+ ++NTL+ + 
Sbjct: 347 KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 380



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 112/261 (42%), Gaps = 47/261 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK-L 81
           N +++N L+  FC +  +  A   +  M + GC P++ + +TL+T L R+G +++ ++ L
Sbjct: 334 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 393

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
           HQ    G         P +  Y ++IDGL K                           KT
Sbjct: 394 HQLKDKGCA-------PVLISYNTVIDGLTK-------------------------AGKT 421

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           K  EA  LL  M+ +GL P I TY+ +  G C   ++  AI  F  +   G  P+   Y+
Sbjct: 422 K--EALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYN 479

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            +I G CK      A+++   MI NG             +P   T  I I+GL   G + 
Sbjct: 480 AIILGLCKRRETHSAIDLFAYMIGNG------------CMPNESTYTILIEGLAYEGLIK 527

Query: 262 EVMELFPTLEISNCELFVEIF 282
           E  +L   L     E+ +++ 
Sbjct: 528 EARDLLDELCSRGEEILLDVH 548


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 173/381 (45%), Gaps = 45/381 (11%)

Query: 9   MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           M +    R  + P N  T+N L+K  C    +  A +L+ +M+  GC P+  +  T+I+ 
Sbjct: 167 MVYRDMKRDGFEP-NVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISS 225

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           +   G           +V    +    ++P V  Y +LI+GLCK+       +L  EM +
Sbjct: 226 MCEVG-----------LVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVE 274

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           KGI+ N +        LC   ++  A   L  M++RG +P I+T + L+ G  L G    
Sbjct: 275 KGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFD 334

Query: 181 AIALFDSMARK-GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------IL 225
           A+ L++ M R  G  P+V +Y+ L+ G+C + N+ +A++V   M              ++
Sbjct: 335 ALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLI 394

Query: 226 NGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           NGF K         I+N+M      P        ++ LC++    E   L   +   NC 
Sbjct: 395 NGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCA 454

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV-ADVVAYNILIHALGKEGQIKKENY 335
             V  FN+ I+G C  G  + A ++F ++  ++    ++V YN L+  L K  +I++   
Sbjct: 455 PSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYG 514

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           L   +   G      T+NTL+
Sbjct: 515 LTREIFMRGVEWSSSTYNTLL 535



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 154/362 (42%), Gaps = 43/362 (11%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F S+I  +   G    A ++  ++  FGC P+V   + ++  L     + +   ++++M 
Sbjct: 114 FISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMK 173

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
                    ++PNVF Y  L+  LCK+  VD  K L +EM +KG   + +        +C
Sbjct: 174 RDG------FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMC 227

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   + E   L E        PV+  Y  L+NG C       A  L   M  KG  P+V 
Sbjct: 228 EVGLVKEGRELAE-----RFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVI 282

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------IFNEMKLCN-- 239
           SYS LIN  C +  +E A +   +M+  G                     F+ + L N  
Sbjct: 283 SYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQM 342

Query: 240 -----VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                + P     N  + G C +G++++ + +F  +E   C   +  + SLI G  K G 
Sbjct: 343 IRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGS 402

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A  ++NK+       +VV Y  ++ AL +  + K+   L+  M +  CA  V TFN 
Sbjct: 403 LDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNA 462

Query: 355 LM 356
            +
Sbjct: 463 FI 464



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 143/340 (42%), Gaps = 25/340 (7%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GA       + +   P N +++++LI   C  G I  A   + +M   GC PN+ T  +L
Sbjct: 264 GAFELMREMVEKGISP-NVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSL 322

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           + G    G     L L  +M+ G G      +PNV  Y +L+ G C    + +   +F  
Sbjct: 323 VKGCFLRGTTFDALDLWNQMIRGFG-----LQPNVVAYNTLVQGFCSHGNIVKAVSVFSH 377

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M++ G + N            K+  L  A  +   M+  G  P +  YT ++   C   K
Sbjct: 378 MEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSK 437

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
              A +L + M+++   P V +++  I G C    ++ A  V R+M          +   
Sbjct: 438 FKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQM---------EQQHR 488

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
           C   P   T N  +DGL K   + E   L   + +   E     +N+L+ G C  G+  I
Sbjct: 489 CP--PNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGI 546

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
           A +L  K+       D +  N++I A  K+G+ ++   +L
Sbjct: 547 ALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQML 586



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 154/357 (43%), Gaps = 48/357 (13%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  +   IR      N V +N+L++GFC  GNI  A  +   M   GC PN+ T  +LI
Sbjct: 335 ALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLI 394

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G+++  + +  +M+      G    PNV  Y ++++                  
Sbjct: 395 NGFAKRGSLDGAVYIWNKMLTS----GCC--PNVVVYTNMVEA----------------- 431

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                     LC+ +K  EA  L+E+M +    P + T+   + G C  G+++ A  +F 
Sbjct: 432 ----------LCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFR 481

Query: 187 SMARKGF-MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
            M ++    P++ +Y+ L++G  K   +EEA  ++RE+ + G            V   + 
Sbjct: 482 QMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRG------------VEWSSS 529

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T N  + G C  G     ++L   + +          N +I   CK G  E A+++ + +
Sbjct: 530 TYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLV 589

Query: 306 SC--KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           SC  +    DV++Y  +I  L +    +    LL  M   G    + T++ L+  F+
Sbjct: 590 SCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCFI 646



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 151/347 (43%), Gaps = 32/347 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TF  +I+   M+G +     L+++M   G   +     ++I+  R+ G     +    E
Sbjct: 77  LTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAV----E 132

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M   + +FG    P+V  Y  ++D L  +  +     ++ +MK  G   N          
Sbjct: 133 MFYRIKEFGC--DPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKA 190

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  K+  A +LL  M  +G  P   +YT +++  C VG V     L +      F P 
Sbjct: 191 LCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAER-----FEPV 245

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V  Y+ LING CK  + + A  + REM+  G            + P   + +  I+ LC 
Sbjct: 246 VSVYNALINGLCKEHDYKGAFELMREMVEKG------------ISPNVISYSTLINVLCN 293

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL-SCKNLVADVV 315
           +G +         +    C   +   +SL++GC   G    A +L+N++     L  +VV
Sbjct: 294 SGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVV 353

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           AYN L+      G I K   +   MEE GC+ ++ T+ +L+  F ++
Sbjct: 354 AYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKR 400



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 138/300 (46%), Gaps = 30/300 (10%)

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           ++  LR+   + L L   + + N       ++K     +  +I  L  D  VD  + L  
Sbjct: 46  VVKRLRQESCVPLALHFFKSIANS-----NLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQ 100

Query: 125 EMKDKGINAN-----TLLCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVG 176
           +MK +G + +     +++    ++  A R +E+   + + G +P +  Y  +L+      
Sbjct: 101 QMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGEN 160

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           ++ +   ++  M R GF P+VF+Y+VL+   CKN  V+            G KK+  EM 
Sbjct: 161 RIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVD------------GAKKLLVEMS 208

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
                P+  +    I  +C+ G V E  EL    E       V ++N+LI G CK   ++
Sbjct: 209 NKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEP-----VVSVYNALINGLCKEHDYK 263

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A EL  ++  K +  +V++Y+ LI+ L   GQI+     L  M + GC  ++ T ++L+
Sbjct: 264 GAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLV 323



 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 31/149 (20%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N+L+ G C  G    A QLV KM   G  P+  T + +I    + G      ++   +
Sbjct: 530 TYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLV 589

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
             G       ++P+V  Y ++I GLC+                         C++  ++ 
Sbjct: 590 SCGRRK----WRPDVISYTNVIWGLCRSN-----------------------CREDGVI- 621

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
              LLE M+  G+ P I T++ L+N + L
Sbjct: 622 ---LLERMISAGIVPSIATWSVLINCFIL 647


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 171/361 (47%), Gaps = 28/361 (7%)

Query: 12  GSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71
            S I++   P+     N+LIK F   G + +   + +KM   G  P + T + L+ GL  
Sbjct: 175 SSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVS 234

Query: 72  TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
              ++   ++ + M +G        KP++  Y ++I G CK     +  +   +M+ +G 
Sbjct: 235 AMFVDSAERVFEVMESGR------IKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGH 288

Query: 132 NANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
            A+ +            +       L + M ++G+      ++ ++ G C  GK+N    
Sbjct: 289 EADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYT 348

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           +F++M RKG  P+V  Y+VLI+GY K+ +VE+A+ +   MI  GFK            P+
Sbjct: 349 VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK------------PD 396

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T ++ ++GLCKNG V E ++ F T       +    ++SLI G  K G  + A  LF 
Sbjct: 397 VVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFE 456

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM-EENGCALDVDTFNTLMISFLQK 362
           ++S K    D   YN LI A  K  ++ +   L   M EE GC   V T+ T+++S + K
Sbjct: 457 EMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTY-TILLSGMFK 515

Query: 363 E 363
           E
Sbjct: 516 E 516



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 134/334 (40%), Gaps = 70/334 (20%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLLCKKTKLVEANRLL 150
           Y  N+ CY SL+D L   + VD+ + +  E+K          AN L+    KL     LL
Sbjct: 148 YTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELL 207

Query: 151 EL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +   M + G+ P ++TY  L+NG      V+ A  +F+ M      PD+ +Y+ +I GY
Sbjct: 208 WVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGY 267

Query: 208 CKNFNVEEAMNVSREMILNGFK-----------------------KIFNEM--KLCNVVP 242
           CK    ++AM   R+M   G +                        ++ EM  K   V P
Sbjct: 268 CKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPP 327

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
             F+  + I GLCK G + E   +F  +     +  V I+  LI G  K G  E A  L 
Sbjct: 328 HAFS--LVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLL 385

Query: 303 NKLSCKNLVADVVAYNI-----------------------------------LIHALGKE 327
           +++  +    DVV Y++                                   LI  LGK 
Sbjct: 386 HRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKA 445

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           G++ +   L   M E GC  D   +N L+ +F +
Sbjct: 446 GRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 479



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 51/204 (25%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N + ++SLI G    G + +A +L ++M+  GC     T D+                 
Sbjct: 430 INSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGC-----TRDS----------------- 467

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-----DKGINANTL 136
                              +CY +LID   K R VD+   LF  M+     D+ +   T+
Sbjct: 468 -------------------YCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTI 508

Query: 137 LC----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L     K+ +  EA +L ++M+ +G+ P    +  L  G CL GKV  A  + D +A  G
Sbjct: 509 LLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMG 568

Query: 193 FMPDVFSYSVLINGYCKNFNVEEA 216
            + D  +   +IN  CK   ++EA
Sbjct: 569 VILDA-ACEDMINTLCKAGRIKEA 591


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 143/316 (45%), Gaps = 45/316 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V FN+L+ G C EG + +A  LV +M   G +PN  T  T++ G+ + G+ +  L L ++
Sbjct: 11  VAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLRK 70

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M     D   I K +V  Y ++ID LCKD    + ++LF EM DK               
Sbjct: 71  M-----DESHI-KADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDK--------------- 109

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                       G+ P + TY  +++G C  GK   A  L   M      PDV +++ LI
Sbjct: 110 ------------GIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALI 157

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           N + K   + EA  + REM+              N+ P+T T N  IDG CK+  + +  
Sbjct: 158 NAFVKEGKISEAEELYREMLGR------------NIFPDTITYNSLIDGFCKHSRLDDAK 205

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            +F  +        V   N+LI GCC+    +   +L +++  + LV D V+YN LIH  
Sbjct: 206 HIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGF 265

Query: 325 GKEGQIKKENYLLLSM 340
            + G +     L   M
Sbjct: 266 CQAGDLNAAQDLFQEM 281



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 126/276 (45%), Gaps = 27/276 (9%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +VL A       +   ++P N+VT+ +++ G C  G+   A  L++KM     + +V   
Sbjct: 25  RVLEAEALVDRMVENGHQP-NEVTYGTIVNGMCKMGDTDSALNLLRKMDESHIKADVVIY 83

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             +I  L + G+ +    L  EM +      GI+ PNV  Y  +IDG C        + L
Sbjct: 84  TAIIDRLCKDGHHSKAQNLFTEMHD-----KGIF-PNVLTYNCMIDGCCSYGKWTDAEQL 137

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             +M +  ++ + +          K+ K+ EA  L   M+ R + P   TY  L++G+C 
Sbjct: 138 LRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCK 197

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
             +++ A  +FD M  KG  P+V + + LI G C+   V++ + +  EM+  G       
Sbjct: 198 HSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGL------ 251

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                 VP++ + N  I G C+ G +    +LF  +
Sbjct: 252 ------VPDSVSYNTLIHGFCQAGDLNAAQDLFQEM 281



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 15/226 (6%)

Query: 134 NTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           NTL   LC++ +++EA  L++ M++ G  P   TY  ++NG C +G  + A+ L   M  
Sbjct: 14  NTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLRKMDE 73

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
                DV  Y+ +I+  CK+ +  +A N            +F EM    + P   T N  
Sbjct: 74  SHIKADVVIYTAIIDRLCKDGHHSKAQN------------LFTEMHDKGIFPNVLTYNCM 121

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           IDG C  G   +  +L   +  SN +  V  FN+LI    K G    A EL+ ++  +N+
Sbjct: 122 IDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNI 181

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             D + YN LI    K  ++    ++   M   G + +V T NTL+
Sbjct: 182 FPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLI 227



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 100/207 (48%), Gaps = 12/207 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M+++G    +  +  L+NG C  G+V  A AL D M   G  P+  +Y  ++NG CK  +
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
            + A+N+ R+M  +  K         +VV  T      ID LCK+GH  +   LF  +  
Sbjct: 61  TDSALNLLRKMDESHIK--------ADVVIYT----AIIDRLCKDGHHSKAQNLFTEMHD 108

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                 V  +N +I GCC +G +  A +L   +   N+  DVV +N LI+A  KEG+I +
Sbjct: 109 KGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISE 168

Query: 333 ENYLLLSMEENGCALDVDTFNTLMISF 359
              L   M       D  T+N+L+  F
Sbjct: 169 AEELYREMLGRNIFPDTITYNSLIDGF 195



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 106/208 (50%), Gaps = 14/208 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V + ++I   C +G+   A  L  +M   G  PNV T + +I G    G      +L ++
Sbjct: 81  VIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRD 140

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+    D      P+V  + +LI+   K+  + + ++L+ EM  + I  +T+        
Sbjct: 141 MIESNVD------PDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDG 194

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK ++L +A  + +LM+ +G +P + T   L+ G C   +V+  I L   M R+G +PD
Sbjct: 195 FCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPD 254

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMI 224
             SY+ LI+G+C+  ++  A ++ +EMI
Sbjct: 255 SVSYNTLIHGFCQAGDLNAAQDLFQEMI 282



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  KG   DV +++ L+NG C+   V EA  +   M+ NG +            P   T 
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQ------------PNEVTY 48

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
              ++G+CK G     + L   ++ S+ +  V I+ ++I   CK G    A  LF ++  
Sbjct: 49  GTIVNGMCKMGDTDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHD 108

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           K +  +V+ YN +I      G+      LL  M E+    DV TFN L+ +F+++
Sbjct: 109 KGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKE 163



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           S++  A   F   + +   P N +T N+LI G C    + D  +L+ +M   G  P+  +
Sbjct: 199 SRLDDAKHIFDLMVSKGGSP-NVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVS 257

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVN 87
            +TLI G  + G++N    L QEM++
Sbjct: 258 YNTLIHGFCQAGDLNAAQDLFQEMIS 283


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 156/331 (47%), Gaps = 45/331 (13%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +   FN L+  F  EG IR A  +   +  +G RP+V + +TL+ G  + G+++   +
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           L   M        G+ +P+V+ Y  LI+GLCK+                           
Sbjct: 193 LKNAM-----QASGV-QPDVYTYSVLINGLCKE--------------------------- 219

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
           +K+ +AN L + M+  GL P   T+T L++G+C  G+V++A+ ++  M  +   PD+ +Y
Sbjct: 220 SKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 279

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + LI G CK  ++++A +++ EM + G K            P+  T    IDG CK GH+
Sbjct: 280 NTLIYGLCKKGDLKQAQDLTDEMSMKGLK------------PDKITYTTLIDGSCKEGHL 327

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
               E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  Y ++
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           I+   K+G +   + LL  M+ +G    V T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 163/365 (44%), Gaps = 27/365 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           A   F + +      ++D+  F+ LI  +   G +RDA +  +       R    T   +
Sbjct: 48  ASAVFAAILETKGTQISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTXRKV 107

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I  L +     L    ++E +    ++G  Y  +++ +  L+    K+  +   + +F  
Sbjct: 108 IEHLMKLKYFKLVWGFYEESL----EYG--YPASLYFFNILMHSFVKEGEIRLAQSVFDA 161

Query: 126 MKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           +   G+       NTL+    K   L E  RL   M   G+ P ++TY+ L+NG C   K
Sbjct: 162 ITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +  A  LFD M   G +P+  +++ LI+G+CKN  V+ AM + ++M+             
Sbjct: 222 MEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ----------- 270

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
            ++ P+  T N  I GLCK G + +  +L   + +   +     + +LI G CK G  E 
Sbjct: 271 -SLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLET 329

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A E   ++  +N+  D VAY  LI  L +EG+      +L  M   G   ++ T+  ++ 
Sbjct: 330 AFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIIN 389

Query: 358 SFLQK 362
            F +K
Sbjct: 390 EFCKK 394



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 13/218 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + + + GL P + ++  L+NGY  +G ++    L ++M   G  PDV++YSVLIN
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G CK   +E+A  +  EM+ NG            +VP   T    IDG CKNG V   ME
Sbjct: 215 GLCKESKMEDANELFDEMLNNG------------LVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           ++  +   +    +  +N+LI G CK G  + A +L +++S K L  D + Y  LI    
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSC 322

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           KEG ++        M +    LD D   T +IS L +E
Sbjct: 323 KEGHLETAFEYRKRMIKENIRLD-DVAYTALISGLCQE 359


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 175/387 (45%), Gaps = 40/387 (10%)

Query: 10  AFGSFIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A G F    +R L  + VT+NS+I G+   G + D     ++M +  C P+V T ++LI 
Sbjct: 152 ARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLIN 211

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
              ++G +   L+ ++EM        G+ KPNV  Y +L+D  CK+ ++ Q    +++M+
Sbjct: 212 CFCKSGKLPKGLEFYREMKQ-----SGL-KPNVVSYSTLVDAFCKEDMMQQAIKFYVDMR 265

Query: 128 DKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
             G   N           CK   L +A RL   M++ G+   + TYT L++G C   ++ 
Sbjct: 266 RVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMK 325

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------- 228
            A  LF  M   G +P++ SY+ LI+G+ K  N++ A+ +  E+   G            
Sbjct: 326 EAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFI 385

Query: 229 ------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
                       K + NEM+   +   T      +D   K+G+  E + L   ++  + E
Sbjct: 386 WGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHE 445

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-NLVADVVAYNILIHALGKEGQIKKENY 335
           + V  F  LI G CK  +   A + F ++S    L  +   Y  +I  L KE Q+K    
Sbjct: 446 VTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATT 505

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQK 362
           L   M + G   D   + +LM   L++
Sbjct: 506 LFEQMAQEGLVPDRTAYTSLMDGNLKQ 532



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 157/342 (45%), Gaps = 26/342 (7%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N L+  F   G      +  K M   G +P V T + +I  + + G++     L +EM  
Sbjct: 102 NGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEM-- 159

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CK 139
               F G+  P+   Y S+IDG  K   +D T   F EMK        I  N+L+   CK
Sbjct: 160 ---KFRGLI-PDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCK 215

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             KL +       M Q GL P + +Y+ L++ +C    +  AI  +  M R G +P+ F+
Sbjct: 216 SGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFT 275

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+ L++  CK  N+ +A  ++ EM+  G +         NVV  T+T    IDGLC    
Sbjct: 276 YTSLVDANCKIGNLSDAFRLANEMLEVGVE--------WNVV--TYTA--LIDGLCDAER 323

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + E  +LF  +  +     +  +N+LI G  K    + A EL N+L  + +  D++ Y  
Sbjct: 324 MKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGT 383

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            I  L    +I+    ++  M+ENG   +   + TLM ++ +
Sbjct: 384 FIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFK 425



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 154/348 (44%), Gaps = 46/348 (13%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +RR     N+ T+ SL+   C  GN+ DA +L  +M   G   NV T   LI GL     
Sbjct: 264 MRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAER 323

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           M    KL  +MV       G+  PN+  Y +LI G  K + +D+  +L  E+K +GI  +
Sbjct: 324 MKEAEKLFGKMVT-----AGVI-PNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPD 377

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            LL                           Y   + G C + K+  A  + + M   G  
Sbjct: 378 LLL---------------------------YGTFIWGLCGLEKIEAAKVVMNEMQENGIK 410

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +   Y+ L++ Y K+ N  E +++  EM     +++ +E+ +      TF   + IDGL
Sbjct: 411 ANTLIYTTLMDAYFKSGNPTEGLHLLEEM-----QELDHEVTVV-----TFC--VLIDGL 458

Query: 255 CKNGHVLEVMELFPTLEIS-NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           CKN  V + ++ F  +      +    ++ ++I G CK    + A+ LF +++ + LV D
Sbjct: 459 CKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPD 518

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             AY  L+    K+G + +   L   M E G  LD+  + +L+  F Q
Sbjct: 519 RTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQ 566



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 138/303 (45%), Gaps = 27/303 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N VT+ +LI G C    +++A +L  KM T G  PN+ + + LI G  +  NM+  L+L
Sbjct: 306 WNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALEL 365

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--- 138
             E+  G G      +P++  YG+ I GLC    ++  K +  EM++ GI ANTL+    
Sbjct: 366 LNEL-KGRG-----IQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTL 419

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK-G 192
                K     E   LLE M +      + T+  L++G C    V+ AI  F  M+   G
Sbjct: 420 MDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFG 479

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+   Y+ +I+G CK   V+ A              +F +M    +VP+       +D
Sbjct: 480 LQPNAAVYTAMIDGLCKENQVKAATT------------LFEQMAQEGLVPDRTAYTSLMD 527

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G  K G++LE + L   +     +L +  + SL+ G  +    + A     ++  + ++ 
Sbjct: 528 GNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILP 587

Query: 313 DVV 315
           D V
Sbjct: 588 DEV 590



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 12/214 (5%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L EA +    M +  + P   +   LL+ +  +GK +     F  M   G  P VF+Y++
Sbjct: 79  LEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNI 138

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           +I+   K  ++E A            + +F EMK   ++P+T T N  IDG  K G + +
Sbjct: 139 MIDCMWKEGDIEAA------------RGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDD 186

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            +  F  ++  +CE  V  +NSLI   CK G      E + ++    L  +VV+Y+ L+ 
Sbjct: 187 TVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVD 246

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A  KE  +++     + M   G   +  T+ +L+
Sbjct: 247 AFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLV 280



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 60/128 (46%)

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F++MK   V P+T +CN  +    K G    V   F  +  +  +  V  +N +I    K
Sbjct: 86  FSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWK 145

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A  LF ++  + L+ D V YN +I   GK G++    Y    M+   C  DV T
Sbjct: 146 EGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVIT 205

Query: 352 FNTLMISF 359
           +N+L+  F
Sbjct: 206 YNSLINCF 213



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 17/237 (7%)

Query: 132 NANTLL----CKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           +AN++L      K +L E +   EL   R +  P    +  L +    +G +  A   F 
Sbjct: 28  DANSILREIVLSKAELEECDVFDELWSTRNVCVPGFGVFDALFSVLIDLGMLEEATQCFS 87

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M R    P   S + L++ + K                +G K+ F +M      P  FT
Sbjct: 88  KMKRFRVFPKTRSCNGLLHKFAKLGKT------------DGVKRFFKDMIGAGSKPTVFT 135

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            NI ID + K G +     LF  ++          +NS+I G  K G  +     F ++ 
Sbjct: 136 YNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMK 195

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             +   DV+ YN LI+   K G++ K       M+++G   +V +++TL+ +F +++
Sbjct: 196 SMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKED 252


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 163/336 (48%), Gaps = 26/336 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +NSLIKGFC  G   +A +        G R  +TT + +  GL  +G ++   +L +++ 
Sbjct: 337 YNSLIKGFCEVGRTGEAWKFWDSTGFSGIR-QITTYNIMTKGLLDSGMVSEATELLKQLE 395

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
           N          P+   +G+LI GLC++   ++  ++  + ++ G   +           C
Sbjct: 396 NDAS-----CSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFC 450

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  +  +AN + + M++ G  P    Y  L+NG+C V K+N AI ++  M   G  P + 
Sbjct: 451 KDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTII 510

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y+ LI+G CK    +EA ++++EM+  GFK            P+  T    I GLC++ 
Sbjct: 511 TYNTLIDGLCKAEKYQEASSLTKEMLERGFK------------PDIRTYASLIRGLCRDK 558

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            V   + ++  +  +  ++ V + N LI G C  G  + A  ++ ++  KN   ++V YN
Sbjct: 559 KVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYN 618

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            L+    + G I K   L  ++ +NG   D+ T+NT
Sbjct: 619 TLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNT 654



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 168/386 (43%), Gaps = 37/386 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  +   +R      N  T+  ++ G C  G  ++A ++  +M     + +  T   LI
Sbjct: 247 AMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILI 306

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL R+G+++   +++ +MV       G+   +V  Y SLI G C+     +    +   
Sbjct: 307 HGLCRSGDVDSAARVYSDMVKA-----GLVL-DVSVYNSLIKGFCEVGRTGEAWKFWDST 360

Query: 127 KDKGINANTLLCKKTK-------LVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              GI   T     TK       + EA  LL +L      +P   T+  L++G C  G  
Sbjct: 361 GFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYA 420

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--------- 229
           N A  + +     G   DVFSYS +IN +CK+    +A  V + M+ +G K         
Sbjct: 421 NRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNAL 480

Query: 230 --------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                         KI+ EM      P   T N  IDGLCK     E   L   +     
Sbjct: 481 INGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGF 540

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           +  +  + SLIRG C+    ++A  +++++    L  DV+ +NILIH L   G++ +   
Sbjct: 541 KPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFC 600

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQ 361
           + L M+E  C+ ++ T+NTLM  F +
Sbjct: 601 IYLEMKEKNCSPNLVTYNTLMDGFYE 626



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 163/365 (44%), Gaps = 26/365 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F S  RR   P + VT+++L+ G      + +A  L+ +M  +G + +    + L+
Sbjct: 177 AVSLFSSLRRRGVAP-DRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALL 235

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +G  RTG     +K+ +++V   G       PN+  Y  ++DGLCK     +  +++  M
Sbjct: 236 SGCFRTGMFEKAMKVWEQLVRDPG-----ASPNLATYKVMLDGLCKLGRFKEAGEVWSRM 290

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
                 A+T+        LC+   +  A R+   M++ GL   +  Y  L+ G+C VG+ 
Sbjct: 291 MANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRT 350

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A   +DS    G    + +Y+++  G   +  V EA  +         K++ N+    
Sbjct: 351 GEAWKFWDSTGFSGIR-QITTYNIMTKGLLDSGMVSEATEL--------LKQLEND---A 398

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
           +  P+  T    I GLC+NG+     E+      S  EL V  ++S+I   CK G    A
Sbjct: 399 SCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDA 458

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
           +E++  +       +   YN LI+   +  +I     + + M  NGC   + T+NTL+  
Sbjct: 459 NEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDG 518

Query: 359 FLQKE 363
             + E
Sbjct: 519 LCKAE 523



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 26/246 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   +N+LI GFC    I DA ++  +M + GC P + T +TLI GL +         L 
Sbjct: 473 NSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLT 532

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM+         +KP++  Y SLI GLC+D+ VD    ++ E+ D G+  + +      
Sbjct: 533 KEMLERG------FKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILI 586

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC   K+ EA  +   M ++  +P + TY  L++G+  +G ++ A +L+ ++   G  
Sbjct: 587 HGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLK 646

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ +Y+  I G C       + N + E +L     + NE+    ++P   T +I +  +
Sbjct: 647 PDIVTYNTRIKGLC-------SCNRTPEGVL-----LLNEVLATGIMPTVITWSILVRAV 694

Query: 255 CKNGHV 260
            K G +
Sbjct: 695 IKYGPI 700



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 137/314 (43%), Gaps = 25/314 (7%)

Query: 53  FGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK 112
            GC P V + +TL+    R    +        + +G   FG    PN+  Y  ++  LC 
Sbjct: 113 LGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGA--FGRRIAPNLQTYNIILRSLCA 170

Query: 113 DRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFT 164
              VD+   LF  ++ +G+  + +        L K  +L  A  LL+ M   G+      
Sbjct: 171 RGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVC 230

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMAR-KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           Y  LL+G    G    A+ +++ + R  G  P++ +Y V+++G CK    +EA  V   M
Sbjct: 231 YNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRM 290

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
           + N            N   +T T  I I GLC++G V     ++  +  +   L V ++N
Sbjct: 291 MAN------------NHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYN 338

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           SLI+G C+ G    A + ++       +  +  YNI+   L   G + +   LL  +E +
Sbjct: 339 SLIKGFCEVGRTGEAWKFWDSTGFSG-IRQITTYNIMTKGLLDSGMVSEATELLKQLEND 397

Query: 344 G-CALDVDTFNTLM 356
             C+ D  TF TL+
Sbjct: 398 ASCSPDKVTFGTLI 411



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 13/205 (6%)

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
           R + P + TY  +L   C  G V+ A++LF S+ R+G  PD  +YS L++G  K+  ++ 
Sbjct: 152 RRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDN 211

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL-EISN 274
           A++            + +EM    V  +    N  + G  + G   + M+++  L     
Sbjct: 212 ALD------------LLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPG 259

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
               +  +  ++ G CK G F+ A E+++++   N  AD V Y ILIH L + G +    
Sbjct: 260 ASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAA 319

Query: 335 YLLLSMEENGCALDVDTFNTLMISF 359
            +   M + G  LDV  +N+L+  F
Sbjct: 320 RVYSDMVKAGLVLDVSVYNSLIKGF 344


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 164/358 (45%), Gaps = 54/358 (15%)

Query: 3   KVLGALMAFGSF---------IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF 53
           KVL  LM    F         I  C  P +   FN L+  FC EG IR A  +   +  +
Sbjct: 106 KVLDHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKW 165

Query: 54  GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
           G +P+V + +TL+ G  + G ++   +L     N M   G   +P+V+ Y  LI+GLCK+
Sbjct: 166 GLKPSVVSFNTLMNGYIKMGILDEGFRLK----NAMHASGA--QPDVYTYSVLINGLCKE 219

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
                                      +K+ EA+ L + M+++GL P   T+T L++G+C
Sbjct: 220 ---------------------------SKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHC 252

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             GK+++A+ ++  +  +G  PD+ +Y+ LI G+CK  ++++  ++  EM + G K    
Sbjct: 253 KNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLK---- 308

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+  T    IDG CK G +    E    +   N  L   ++ +LI G CK G
Sbjct: 309 --------PDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEG 360

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               A ++  ++    L  D   Y I+++   K G +   + LL  M+ +G    V T
Sbjct: 361 RSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSVVT 418



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 150/341 (43%), Gaps = 26/341 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 69  FSGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKD---RLVDQTKDLFME--MKDKGINANTLLCKKT 141
                    Y  +++ +  L+   CK+   RL     D   +  +K   ++ NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYI 182

Query: 142 K---LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L E  RL   M   G  P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 183 KMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  ++ AM + ++++  G              P+  T N  I G CK G
Sbjct: 243 TFTTLIDGHCKNGKLDLAMEIYKQILSQGLS------------PDLITYNTLIYGFCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E   K+  +N+  D V Y 
Sbjct: 291 DLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            LI  L KEG+      +L  M   G   D  T+  +M  F
Sbjct: 351 ALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEF 391



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 13/227 (5%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ ++  A  + + + + GL P + ++  L+NGY  +G ++    L ++M   G  PD
Sbjct: 146 FCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPD 205

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V++YSVLING CK   ++EA             ++F+EM    +VP   T    IDG CK
Sbjct: 206 VYTYSVLINGLCKESKMDEA------------HELFDEMLEKGLVPNGVTFTTLIDGHCK 253

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           NG +   ME++  +        +  +N+LI G CK G  +   +L +++S K L  D + 
Sbjct: 254 NGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKIT 313

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y  LI    KEG ++        M E    LD D   T +IS L KE
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKKMIEENIRLD-DVVYTALISGLCKE 359


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 151/333 (45%), Gaps = 32/333 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           A++ F   +   + P  DV +FN LI+G C  G I  A +  + M  FGC P++ + +TL
Sbjct: 198 AVLLFREHLEPYFVP--DVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTL 255

Query: 66  ITGLRRTGNMNLTLKLHQE--MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           I G  R   ++    L +E  ++ G+        P+V  Y S+I G CK   +    +LF
Sbjct: 256 INGFCRVNEISKGHDLLKEDMLIKGVS-------PDVITYTSIISGYCKLGDMKAASELF 308

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EM   GI  N            K   +  A  + E M+  G  P + T+T L++GYC  
Sbjct: 309 DEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCRE 368

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G+VN  + L++ M  +   P+V++Y+VLIN  CK   + EA N  R +            
Sbjct: 369 GEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHL------------ 416

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           K   VVP+ F  N  IDG CK G V E   +   ++   C      F  LI G C  G  
Sbjct: 417 KSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRM 476

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
             A   F K+   N V D +  N LI  L K G
Sbjct: 477 VEAISTFYKMIEINCVPDEITINSLISCLLKAG 509



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 162/337 (48%), Gaps = 27/337 (8%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           L+  +   G +  A   + ++  +G + +    + L+  L +   ++  + L +E +   
Sbjct: 150 LVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPY 209

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKT 141
                 + P+V+ +  LI GLC+   +D+  + F  M + G     ++ NTL+   C+  
Sbjct: 210 ------FVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVN 263

Query: 142 KLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
           ++ + + LL E M+ +G++P + TYT +++GYC +G +  A  LFD M   G  P+ F++
Sbjct: 264 EISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTF 323

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           +VLI+G+ K  N+  AM +  +M+L G             +P+  T    IDG C+ G V
Sbjct: 324 NVLIDGFGKVGNMRSAMVMYEKMLLLG------------CLPDVVTFTSLIDGYCREGEV 371

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            + ++L+  +++ N    V  +  LI   CK      A      L    +V     YN +
Sbjct: 372 NQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPV 431

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           I    K G++ + N+++  M+E  C  D  TF  L+I
Sbjct: 432 IDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILII 468



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 27/345 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            +N+L+     +  + +A  L ++       P+V + + LI GL R G ++   +  Q  
Sbjct: 181 VYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQ-- 238

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME-MKDKGINANTL-------- 136
              MG+FG    P++  Y +LI+G C+   + +  DL  E M  KG++ + +        
Sbjct: 239 --NMGNFGCF--PDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISG 294

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   +  A+ L + M+  G+ P  FT+  L++G+  VG +  A+ +++ M   G +PD
Sbjct: 295 YCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPD 354

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +++ LI+GYC+   V + +            K++ EMK+ N+ P  +T  + I+ LCK
Sbjct: 355 VVTFTSLIDGYCREGEVNQGL------------KLWEEMKVRNLSPNVYTYAVLINALCK 402

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E       L+ S       I+N +I G CK G  + A+ +  ++  K    D + 
Sbjct: 403 ENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKIT 462

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           + ILI     +G++ +       M E  C  D  T N+L+   L+
Sbjct: 463 FTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLK 507



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 108/245 (44%), Gaps = 47/245 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ND TFN LI GF   GN+R A  + +KM   GC P+V T  +LI G  R G +N  LKL 
Sbjct: 319 NDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLW 378

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
           +EM V  +        PNV+ Y  LI+ LCK+  + + ++    +K   +          
Sbjct: 379 EEMKVRNLS-------PNVYTYAVLINALCKENRIREARNFLRHLKSSEV---------- 421

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                             P  F Y P+++G+C  GKV+ A  +   M  K   PD  +++
Sbjct: 422 -----------------VPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFT 464

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           +LI G C    + EA++             F +M   N VP+  T N  I  L K G   
Sbjct: 465 ILIIGNCMKGRMVEAIST------------FYKMIEINCVPDEITINSLISCLLKAGMPN 512

Query: 262 EVMEL 266
           E  ++
Sbjct: 513 EASQI 517



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 99/259 (38%), Gaps = 59/259 (22%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
            +N    TY  L+   C VG  + A  +FD M   G +PD     +L++ Y +   ++ A
Sbjct: 104 SINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSA 163

Query: 217 MNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTCNIFIDG 253
            N   E+   G K                        +F E      VP+ ++ NI I G
Sbjct: 164 KNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRG 223

Query: 254 LCKNGHVLEVMELFPTL-----------------------EISNCELFVE---------- 280
           LC+ G + +  E F  +                       EIS     ++          
Sbjct: 224 LCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSP 283

Query: 281 ---IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               + S+I G CK G  + ASELF+++    +  +   +N+LI   GK G ++    + 
Sbjct: 284 DVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMY 343

Query: 338 LSMEENGCALDVDTFNTLM 356
             M   GC  DV TF +L+
Sbjct: 344 EKMLLLGCLPDVVTFTSLI 362


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 169/344 (49%), Gaps = 28/344 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI  +C EG + +A +++  MA  G +P++ T + +I GL + G       +  E
Sbjct: 2   VTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIE 61

Query: 85  MVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------T 135
           M+N G+        P+   Y +L+   C+     + K++F EM  +G+  +         
Sbjct: 62  MLNIGL-------SPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMA 114

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
           +  +   L +A      M + GL P    YT L++GYC  G +  A+ + D M  +G + 
Sbjct: 115 VFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVL 174

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           DV +Y+ ++NG CK            E +L    K+F+EM     +P+ +T    I G C
Sbjct: 175 DVIAYNTILNGLCK------------EKMLTDADKLFDEMVERGALPDFYTFTTLIHGHC 222

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           ++G++ + + LF T+   N +  +  +N+LI G CK G  E ASEL++ +  + +  + +
Sbjct: 223 QDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHI 282

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            Y ILI+A    G + +   L   M E G    + T NT++  +
Sbjct: 283 TYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGY 326



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 156/340 (45%), Gaps = 61/340 (17%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N++I G C +G    A  ++ +M   G  P+ TT +TL+    R  N +   ++  EM
Sbjct: 38  TYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEM 97

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------------- 131
           +       G+  P++  + SL+    ++R +DQ    F +MK  G+              
Sbjct: 98  LRQ-----GVV-PDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGY 151

Query: 132 --NANTL---------------------------LCKKTKLVEANRLLELMMQRGLNPVI 162
             N N L                           LCK+  L +A++L + M++RG  P  
Sbjct: 152 CRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDF 211

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
           +T+T L++G+C  G +  A++LF +M ++   PD+ +Y+ LI+G+CK   +E+A  +   
Sbjct: 212 YTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDG 271

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
           MI    +KIF         P   T  I I+  C  GHV E   L+  +     +  +   
Sbjct: 272 MI---SRKIF---------PNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTC 319

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
           N++I+G C+ G    A E   ++  K +  D ++YN LI+
Sbjct: 320 NTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 14/192 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ + +N+++ G C E  + DA +L  +M   G  P+  T  TLI G  + GNM   L L
Sbjct: 174 LDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSL 233

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
              M           KP++  Y +LIDG CK   +++  +L+  M  + I  N +     
Sbjct: 234 FGTMTQRN------IKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGIL 287

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               C    + EA RL ++M+++G+ P + T   ++ GYC  G  + A      M  KG 
Sbjct: 288 INAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGV 347

Query: 194 MPDVFSYSVLIN 205
            PD  SY+ LIN
Sbjct: 348 APDHISYNTLIN 359



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 45/236 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++V +  L+ G+C  GN+ +A ++  +M   GC  +V   +T++ GL +   +    KL 
Sbjct: 140 DNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLF 199

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            EMV    + G +  P+ + + +LI G C+D                             
Sbjct: 200 DEMV----ERGAL--PDFYTFTTLIHGHCQD---------------------------GN 226

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           + +A  L   M QR + P I  Y  L++G+C VG++  A  L+D M  +   P+  +Y +
Sbjct: 227 MTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGI 286

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           LIN YC   +V EA  +   MI  G K            P   TCN  I G C++G
Sbjct: 287 LINAYCSVGHVSEAFRLWDVMIEKGIK------------PTLVTCNTVIKGYCRSG 330



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 47/82 (57%)

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N+LI   C+ G+ E A E+ N ++ K L   +  YN +I+ L K+G+  +   +L+ M 
Sbjct: 4   YNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEML 63

Query: 342 ENGCALDVDTFNTLMISFLQKE 363
             G + D  T+NTL++   +++
Sbjct: 64  NIGLSPDTTTYNTLLVESCRRD 85


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 151/333 (45%), Gaps = 32/333 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           A++ F   +   + P  DV +FN LI+G C  G I  A +  + M  FGC P++ + +TL
Sbjct: 198 AVLLFREHLEPYFVP--DVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTL 255

Query: 66  ITGLRRTGNMNLTLKLHQE--MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           I G  R   ++    L +E  ++ G+        P+V  Y S+I G CK   +    +LF
Sbjct: 256 INGFCRVNEISKGHDLLKEDMLIKGVS-------PDVITYTSIISGYCKLGDMKAASELF 308

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EM   GI  N            K   +  A  + E M+  G  P + T+T L++GYC  
Sbjct: 309 DEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCRE 368

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G+VN  + L++ M  +   P+V++Y+VLIN  CK   + EA N  R +            
Sbjct: 369 GEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHL------------ 416

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           K   VVP+ F  N  IDG CK G V E   +   ++   C      F  LI G C  G  
Sbjct: 417 KSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRM 476

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
             A   F K+   N V D +  N LI  L K G
Sbjct: 477 VEAISTFYKMIEINCVPDEITINSLISCLLKAG 509



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 162/337 (48%), Gaps = 27/337 (8%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           L+  +   G +  A   + ++  +G + +    + L+  L +   ++  + L +E +   
Sbjct: 150 LVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPY 209

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKT 141
                 + P+V+ +  LI GLC+   +D+  + F  M + G     ++ NTL+   C+  
Sbjct: 210 ------FVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVN 263

Query: 142 KLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
           ++ + + LL E M+ +G++P + TYT +++GYC +G +  A  LFD M   G  P+ F++
Sbjct: 264 EISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTF 323

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           +VLI+G+ K  N+  AM +  +M+L G             +P+  T    IDG C+ G V
Sbjct: 324 NVLIDGFGKVGNMRSAMVMYEKMLLLG------------CLPDVVTFTSLIDGYCREGEV 371

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            + ++L+  +++ N    V  +  LI   CK      A      L    +V     YN +
Sbjct: 372 NQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPV 431

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           I    K G++ + N+++  M+E  C  D  TF  L+I
Sbjct: 432 IDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILII 468



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 27/345 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            +N+L+     +  + +A  L ++       P+V + + LI GL R G ++   +  Q  
Sbjct: 181 VYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQ-- 238

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME-MKDKGINANTL-------- 136
              MG+FG    P++  Y +LI+G C+   + +  DL  E M  KG++ + +        
Sbjct: 239 --NMGNFGCF--PDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISG 294

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   +  A+ L + M+  G+ P  FT+  L++G+  VG +  A+ +++ M   G +PD
Sbjct: 295 YCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPD 354

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +++ LI+GYC+   V + +            K++ EMK+ N+ P  +T  + I+ LCK
Sbjct: 355 VVTFTSLIDGYCREGEVNQGL------------KLWEEMKVRNLSPNVYTYAVLINALCK 402

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E       L+ S       I+N +I G CK G  + A+ +  ++  K    D + 
Sbjct: 403 ENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKIT 462

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           + ILI     +G++ +       M E  C  D  T N+L+   L+
Sbjct: 463 FTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLK 507



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 108/245 (44%), Gaps = 47/245 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ND TFN LI GF   GN+R A  + +KM   GC P+V T  +LI G  R G +N  LKL 
Sbjct: 319 NDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLW 378

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
           +EM V  +        PNV+ Y  LI+ LCK+  + + ++    +K   +          
Sbjct: 379 EEMKVRNLS-------PNVYTYAVLINALCKENRIREARNFLRHLKSSEV---------- 421

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                             P  F Y P+++G+C  GKV+ A  +   M  K   PD  +++
Sbjct: 422 -----------------VPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFT 464

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           +LI G C    + EA++             F +M   N VP+  T N  I  L K G   
Sbjct: 465 ILIIGNCMKGRMVEAIST------------FYKMIEINCVPDEITINSLISCLLKAGMPN 512

Query: 262 EVMEL 266
           E  ++
Sbjct: 513 EASQI 517



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 99/259 (38%), Gaps = 59/259 (22%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
            +N    TY  L+   C VG  + A  +FD M   G +PD     +L++ Y +   ++ A
Sbjct: 104 SINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSA 163

Query: 217 MNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTCNIFIDG 253
            N   E+   G K                        +F E      VP+ ++ NI I G
Sbjct: 164 KNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRG 223

Query: 254 LCKNGHVLEVMELFPTL-----------------------EISNCELFVE---------- 280
           LC+ G + +  E F  +                       EIS     ++          
Sbjct: 224 LCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSP 283

Query: 281 ---IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               + S+I G CK G  + ASELF+++    +  +   +N+LI   GK G ++    + 
Sbjct: 284 DVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMY 343

Query: 338 LSMEENGCALDVDTFNTLM 356
             M   GC  DV TF +L+
Sbjct: 344 EKMLLLGCLPDVVTFTSLI 362


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 159/346 (45%), Gaps = 27/346 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            T+  LI      G I +  ++ ++M   G + ++     +I    + GN      L  E
Sbjct: 2   ATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDE 61

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           +        G+   NV  YG+LIDG+CK   ++  + L  EM+ +G++ N L+       
Sbjct: 62  LTEK-----GLV-ANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDG 115

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+  + EA ++  +M ++G    I+T   + +G   + +   A     +M  KG +P+
Sbjct: 116 YCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPN 175

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V SY+ LI+ YCK  N  EA            KK+F EMK     P   T N+ IDG  K
Sbjct: 176 VVSYTTLIDIYCKEGNFVEA------------KKLFQEMKKAGGEPNAVTYNVLIDGHSK 223

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E  EL   +        +  + SL+ G C FG  + A ELFN++  K L  +VV 
Sbjct: 224 KGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVT 283

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           Y  +I  L KEG+ ++   L   M E G   D D   T ++S L K
Sbjct: 284 YTAIISGLSKEGRSEEAFKLYDEMTEAGLTPD-DRVYTSLVSSLHK 328



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 14/215 (6%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N + +N+LI G+C  G I +A ++   M   G   ++ T +T+  GLR+        + 
Sbjct: 104 VNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRW 163

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
              M+       G+  PNV  Y +LID  CK+    + K LF EMK  G   N +     
Sbjct: 164 LLTMIE-----KGVV-PNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVL 217

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                KK ++ EA  L + M  +G+ P I+TYT LL+G C+ GK++ A+ LF+ + +KG 
Sbjct: 218 IDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGL 277

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
             +V +Y+ +I+G  K    EEA  +  EM   G 
Sbjct: 278 PLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGL 312



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 128/295 (43%), Gaps = 32/295 (10%)

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLE 151
           V  Y  LID       +D+ + +F EM +KGI A+  +        CK      A  L +
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            + ++GL   + TY  L++G C  G++  A  L + M  +G   +   Y+ LI+GYCK  
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 212 NVEEAMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCN 248
            ++EA  V   M   GF                       K+    M    VVP   +  
Sbjct: 121 LIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYT 180

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             ID  CK G+ +E  +LF  ++ +  E     +N LI G  K G  + A EL +++  K
Sbjct: 181 TLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAK 240

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +  D+  Y  L+H     G++     L   + + G  L+V T+ T +IS L KE
Sbjct: 241 GIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTY-TAIISGLSKE 294



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 33/187 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++ +LI  +C EGN  +A +L ++M   G  PN  T + LI G  + G M    +L 
Sbjct: 175 NVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELR 234

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            EM        GI+ P+++ Y SL+ G C    +D   +LF E++ KG+  N        
Sbjct: 235 DEM-----RAKGIF-PDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLN-------- 280

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                              + TYT +++G    G+   A  L+D M   G  PD   Y+ 
Sbjct: 281 -------------------VVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTS 321

Query: 203 LINGYCK 209
           L++   K
Sbjct: 322 LVSSLHK 328


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 158/332 (47%), Gaps = 31/332 (9%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP + VTF +L+ G C EG +  A  LV +M   G +P      T+I GL + G+    L
Sbjct: 7   RP-DVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPY----GTIINGLCKMGDTESAL 61

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            L  +M           K +V  Y ++ID LCKD      ++LF EM DKGI  + +   
Sbjct: 62  NLLSKMEETH------IKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYS 115

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 C+  +  +A +LL  M++R +NP + T++ L+N     GKV+ A  ++  M R+
Sbjct: 116 GMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRR 175

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P   +Y+ +I+G+CK               LN  K++ + M   +  P+  T +  I
Sbjct: 176 GIFPTTITYNSMIDGFCKQDR------------LNDAKRMLDSMASKSCSPDVVTFSTLI 223

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +G CK   V   ME+F  +           + +LI G C+ G  + A +L N +    + 
Sbjct: 224 NGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVA 283

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            + + +  ++ +L  + +++K   +L  ++++
Sbjct: 284 PNYITFQSMLASLCSKKELRKAFAILEDLQKS 315



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 147/322 (45%), Gaps = 30/322 (9%)

Query: 50  MATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109
           M   GCRP+V T  TL+ GL   G +   L L   MV         ++P    YG++I+G
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEG------HQP----YGTIING 50

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPV 161
           LCK    +   +L  +M++  I A+ +        LCK    + A  L   M  +G+ P 
Sbjct: 51  LCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPD 110

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           + TY+ +++ +C  G+   A  L   M  +   PDV ++S LIN   K   V EA  +  
Sbjct: 111 VITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYG 170

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
           +M+  G            + P T T N  IDG CK   + +   +  ++   +C   V  
Sbjct: 171 DMLRRG------------IFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVT 218

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           F++LI G CK    +   E+F ++  + +VA+ V Y  LIH   + G +     LL  M 
Sbjct: 219 FSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMI 278

Query: 342 ENGCALDVDTFNTLMISFLQKE 363
            +G A +  TF +++ S   K+
Sbjct: 279 SSGVAPNYITFQSMLASLCSKK 300


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 165/359 (45%), Gaps = 26/359 (7%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G  I+   R    VTF  L++  C E    DA  +V ++M   GC P+V +  TL+ G
Sbjct: 166 ALGQIIKTGLRA-QAVTFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKG 224

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L          +   E+++ M + G    PNV  Y ++I G  K+  V +   LF +M D
Sbjct: 225 L----CAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLD 280

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
            GI  N +        LCK   + +A  +L+ M+   + P   TY  L++GY   G+   
Sbjct: 281 HGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTE 340

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A+ +   M+R G  P+V +YS+LI+  CK+    EA            ++IFN M     
Sbjct: 341 AVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEA------------REIFNSMIQSGQ 388

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P   T    + G    G+++++  +   +  +       +FN  I   CK G  + AS 
Sbjct: 389 KPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASL 448

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            FNK+  +  + D+VAY  +I  L K G++         M ++G + D+ TFNTL+  F
Sbjct: 449 TFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGF 507



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 161/344 (46%), Gaps = 26/344 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT NS+I G C    +  A  ++++M      PN TT ++LI G   +G     ++
Sbjct: 284 PPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVR 343

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----T 135
           + +EM           +PNV  Y  LID LCK  L  + +++F  M   G   N     +
Sbjct: 344 ILKEMSRDG------QRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGS 397

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           LL     +  LV+ N + +LM+Q G+ P    +   +  YC  G+++ A   F+ M ++G
Sbjct: 398 LLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQG 457

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           FMPD+ +Y+ +I+G CK   +++AM+   +MI +G              P+  T N  I 
Sbjct: 458 FMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLS------------PDIITFNTLIH 505

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G   +G   +  ELF  +        V  FNS+I    K G    A +LF+ +       
Sbjct: 506 GFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKP 565

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +VV+YN +IH     G++ +   LL  M   G      TFNTL+
Sbjct: 566 NVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLL 609



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 129/273 (47%), Gaps = 24/273 (8%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F S I+   +P N  T+ SL+ G+  EGN+ D + +   M   G RP     +  I    
Sbjct: 380 FNSMIQSGQKP-NASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYC 438

Query: 71  RTGNMN-LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
           + G ++  +L  ++    G       + P++  Y ++IDGLCK   +D     F +M D 
Sbjct: 439 KCGRLDEASLTFNKMQQQG-------FMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDD 491

Query: 130 GINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
           G++      NTL+       K  +A  L   MM RG+ P + T+  +++     GKV  A
Sbjct: 492 GLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEA 551

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------IFNE 234
             LFD M R G  P+V SY+ +I+GY     V E M +  +M+L G K        + + 
Sbjct: 552 RKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDG 611

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           M    + P+  TC   ID  C++G + +++ LF
Sbjct: 612 MVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLF 644



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 160/368 (43%), Gaps = 67/368 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+NSLI G+   G   +A +++K+M+  G RPNV T   LI  L ++G       LH
Sbjct: 321 NCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSG-------LH 373

Query: 83  ---QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVD--QTKDLFMEMKDKGINANTL 136
              +E+ N M   G   KPN   YGSL+ G   +  LVD    KDL ++    G+     
Sbjct: 374 AEAREIFNSMIQSG--QKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQ---NGMRPGRH 428

Query: 137 L--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
           +        CK  +L EA+     M Q+G  P I  YT +++G C +G+++ A++ F  M
Sbjct: 429 VFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQM 488

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-------------------- 228
              G  PD+ +++ LI+G+  +   E+A  +  EM+  G                     
Sbjct: 489 IDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKV 548

Query: 229 ---KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
              +K+F+ M      P   + N  I G    G V EVM+L   + +   +     FN+L
Sbjct: 549 TEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTL 608

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           + G    G                L  DVV    LI +  ++G+I  E+ L L  E  G 
Sbjct: 609 LDGMVSMG----------------LKPDVVTCKTLIDSCCEDGRI--EDILTLFREMLGK 650

Query: 346 ALDVDTFN 353
           A   DT  
Sbjct: 651 ADKTDTIT 658



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 14/182 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN+LI GF + G    A +L  +M   G  PNV T +++I  L + G +    KL   
Sbjct: 498 ITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDL 557

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M           KPNV  Y ++I G      V +   L  +M         L+  K   V
Sbjct: 558 MPRAGA------KPNVVSYNTMIHGYFIAGEVGEVMKLLDDM--------LLIGLKPTAV 603

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
             N LL+ M+  GL P + T   L++  C  G++   + LF  M  K    D  + ++ +
Sbjct: 604 TFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENIKL 663

Query: 205 NG 206
            G
Sbjct: 664 RG 665


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 168/336 (50%), Gaps = 28/336 (8%)

Query: 36  MEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGG 94
           +EG ++ A + +  M   G +PNV + +T+I G    GN+    ++   M V G+     
Sbjct: 185 LEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGI----- 239

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEA 146
             +P+ + YGSLI G+CK+  +++   LF +M + G     +  NTL+   C K  L  A
Sbjct: 240 --EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 297

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
               + M+++G+ P + TY  L++   + G++  A  +   M +KG +PD  +Y++LING
Sbjct: 298 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 357

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           Y +  N + A ++  EM+  G +              T+T  I++  L +   + E  +L
Sbjct: 358 YSRCGNAKRAFDLHNEMLSKGIEPTH----------VTYTSLIYV--LSRRNRMKEADDL 405

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
           F  +        V +FN++I G C  G  E A  L  ++  K++  D V +N L+    +
Sbjct: 406 FEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCR 465

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           EG++++   LL  M+  G   D  ++NTL+  + ++
Sbjct: 466 EGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRR 501



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 154/321 (47%), Gaps = 27/321 (8%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           ++P N V++N++I G+   GNI  A +++  M   G  P+  T  +LI+G+ + G +   
Sbjct: 204 FKP-NVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEA 262

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--- 135
             L  +MV    + G +  PN   Y +LIDG C    +++      EM  KGI  +    
Sbjct: 263 SGLFDKMV----EIGLV--PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTY 316

Query: 136 -----LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 L  + ++ EA+ +++ M ++G+ P   TY  L+NGY   G    A  L + M  
Sbjct: 317 NLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLS 376

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           KG  P   +Y+ LI    +   ++EA ++        F+KI ++     V P+    N  
Sbjct: 377 KGIEPTHVTYTSLIYVLSRRNRMKEADDL--------FEKILDQ----GVSPDVIMFNAM 424

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           IDG C NG+V     L   ++  +       FN+L++G C+ G  E A  L +++  + +
Sbjct: 425 IDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGI 484

Query: 311 VADVVAYNILIHALGKEGQIK 331
             D ++YN LI   G+ G IK
Sbjct: 485 KPDHISYNTLISGYGRRGDIK 505



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 155/344 (45%), Gaps = 30/344 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+ SLI G C EG + +AS L  KM   G  PN  T +TLI G    G++       
Sbjct: 242 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 301

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLL 137
            EMV       GI  P+V  Y  L+  L  +  + +  D+  EM+ KGI       N L+
Sbjct: 302 DEMVKK-----GIM-PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILI 355

Query: 138 CKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              ++   A R  +L   M+ +G+ P   TYT L+       ++  A  LF+ +  +G  
Sbjct: 356 NGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 415

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV  ++ +I+G+C N NVE A              +  EM   +V P+  T N  + G 
Sbjct: 416 PDVIMFNAMIDGHCANGNVERAF------------MLLKEMDRKSVPPDEVTFNTLMQGR 463

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G V E   L   ++    +     +N+LI G  + G  + A  + +++        +
Sbjct: 464 CREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTL 523

Query: 315 VAYNILIHAL--GKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + YN LI  L   +EG + +E  LL  M   G + D  T+ +L+
Sbjct: 524 LTYNALIKCLCKNQEGDLAEE--LLKEMVNKGISPDDSTYLSLI 565



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 6/114 (5%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P ++VTFN+L++G C EG + +A  L+ +M   G +P+  + +TLI+G  R G++     
Sbjct: 450 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFX 509

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           +  EM++ +G     + P +  Y +LI  LCK++  D  ++L  EM +KGI+ +
Sbjct: 510 VRDEMLS-IG-----FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 557


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 179/377 (47%), Gaps = 41/377 (10%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           +   +R   +P N + +NS+I   C +GN+RDA  ++ K+   G +P+  T  ++I G  
Sbjct: 216 YHQILREGLQP-NLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYC 274

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           R  +++       E+ N M + G   +PN   Y +LI+GLC    V++  D   EM   G
Sbjct: 275 RNRDLDSAF----EIFNRMDEEGC--EPNAATYSTLINGLCNSGRVNEALDFISEMTRHG 328

Query: 131 I--NANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           +    +T       LC   ++ +A ++   M ++G  P ++TYT L++G  +     +AI
Sbjct: 329 VLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVS---RMAI 385

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV--------------SREMILNGF 228
            LF  M+R G +P+  +Y+ L+N   +N  ++ A+ V              S   ++ G+
Sbjct: 386 GLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGY 445

Query: 229 KKIFNEMKLCNVV---------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             I +  K  +++         P   T NI I G C +G     + +   ++ + C+   
Sbjct: 446 CTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDE 505

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             +  LI G CK    E+AS +FN++  + L  + V Y  LI    K+ ++     +L  
Sbjct: 506 WSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLER 565

Query: 340 MEENGCALDVDTFNTLM 356
           M+ +GC  +V T+N L+
Sbjct: 566 MKRSGCRPNVQTYNVLI 582



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 173/398 (43%), Gaps = 64/398 (16%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR-------------RT 72
           TF + I   C  G I DA ++   M   GC+PNV T  +LI+G R             R 
Sbjct: 335 TFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRD 394

Query: 73  GNMNLTLKLHQEM---------------VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD 117
           G +  T+  +  M                N MG  G +  PN   Y  LI G C     +
Sbjct: 395 GVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCL--PNTSSYNELIRGYCTIGDTE 452

Query: 118 QTKDLFMEMKDKGINANTLL---------CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           +   +   M  KG    TL+         C       A R+LELM   G  P  ++YT L
Sbjct: 453 KAMSMLTNML-KGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTEL 511

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM----- 223
           ++G+C + K+ +A  +F+ M  +G  P+  +Y+ LI+GYCK+  ++ A  +   M     
Sbjct: 512 ISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGC 571

Query: 224 ---------ILNGFKKIFN---EMKLCNVV------PETFTCNIFIDGLCKNGHVLEVME 265
                    +++G  K  N     +LC V+      P+  T +  I+GLC NG +   +E
Sbjct: 572 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALE 631

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +F  +    C   +  ++SLI+   + G  E A E+F++L  + L+ D V Y  +I    
Sbjct: 632 MFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCV 691

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             G++ +    L  M   GC   + T++ L I  LQ E
Sbjct: 692 MSGKVDRAFDFLGEMINAGCQPTLQTYDVL-IKGLQNE 728



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 127/268 (47%), Gaps = 23/268 (8%)

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           +F Y +L+  L K  +     D + ++  +G+  N L        LCK   + +A  ++ 
Sbjct: 193 LFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIIN 252

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            + + G+ P  FTYT ++ GYC    ++ A  +F+ M  +G  P+  +YS LING C + 
Sbjct: 253 KVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSG 312

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            V EA++   EM  +G            V+P   T    I  LC  G + +  ++F  ++
Sbjct: 313 RVNEALDFISEMTRHG------------VLPTVHTFTAPIVALCDMGRIEDAWKIFIDMK 360

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
              C+  V  + SLI G     +  +A  LF+++S   +V + V YN L++ L +  +I 
Sbjct: 361 KKGCKPNVYTYTSLISG---QRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEID 417

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
               +   M ++GC  +  ++N L+  +
Sbjct: 418 SALIVFNMMGKHGCLPNTSSYNELIRGY 445



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 147/355 (41%), Gaps = 59/355 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VT+ +LI G+C +  +  A++++++M   GCRPNV T + LI GL +  N +   +L 
Sbjct: 539 NEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELC 598

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
           + M+           P+V  Y ++I+GLC +  +    ++F +M   G   N        
Sbjct: 599 KVMLEEK------ISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLI 652

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L ++ ++ EA  +   + ++GL P   TY  ++    + GKV+ A      M   G  
Sbjct: 653 QALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQ 712

Query: 195 PDVFSYSVLING------YCKNFNVEEAMNVSR--EMILNG------------------- 227
           P + +Y VLI G      Y K   +  A + S   + I+N                    
Sbjct: 713 PTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSR 772

Query: 228 ------------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                                ++  M   +  P   T   F+  L +   V   M++F  
Sbjct: 773 QLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKH 832

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           +    CEL +  +  LI   C+    + A  +F K+  + L AD + + ILI+ L
Sbjct: 833 MSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTILINGL 887



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 105/217 (48%), Gaps = 12/217 (5%)

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           K ++ +A   L++  QRG    +FTYT LL     +   +  +  +  + R+G  P++  
Sbjct: 171 KAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLI 230

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+ +IN  CK+ NV +A ++  ++  +G K            P+TFT    I G C+N  
Sbjct: 231 YNSVINALCKDGNVRDAESIINKVFKSGMK------------PDTFTYTSMILGYCRNRD 278

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +    E+F  ++   CE     +++LI G C  G    A +  ++++   ++  V  +  
Sbjct: 279 LDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTA 338

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            I AL   G+I+    + + M++ GC  +V T+ +L+
Sbjct: 339 PIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLI 375



 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 82/184 (44%), Gaps = 12/184 (6%)

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
            ++  A+   D  +++G    +F+Y+ L+    K       +N++   +++ + +I  E 
Sbjct: 172 AEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNK-------LNMT-STVMDRYHQILRE- 222

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               + P     N  I+ LCK+G+V +   +   +  S  +     + S+I G C+    
Sbjct: 223 ---GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDL 279

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + A E+FN++  +    +   Y+ LI+ L   G++ +    +  M  +G    V TF   
Sbjct: 280 DSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAP 339

Query: 356 MISF 359
           +++ 
Sbjct: 340 IVAL 343


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/385 (29%), Positives = 172/385 (44%), Gaps = 38/385 (9%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV   L       RR   P NDVT+N LI G   +G    A  L+ +M   G + +  T 
Sbjct: 249 KVQQGLDLLSEMQRRGCAP-NDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTY 307

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVD---Q 118
           + LI G    G +   L L +EMV       G   P V  Y S I GLCK  R+ D   Q
Sbjct: 308 NPLIYGYFNKGMLAEALSLQEEMV-----LKGA-SPTVATYNSFIYGLCKLGRMSDAMQQ 361

Query: 119 TKDLFM-EMKDKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             D+    +    ++ NTL+   C+   L++A  L + +    L P I TY  LL+G C 
Sbjct: 362 LSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCR 421

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----- 229
            G++ VA  L   M  +G  PD+ +Y++L+NG CK  ++  A     EM+  G +     
Sbjct: 422 QGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYA 481

Query: 230 ---KIFNEMKLCNVV---------------PETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
              +I  E+KL +                 P+    N+ +DGLCK G++ E  EL   + 
Sbjct: 482 YATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMV 541

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
                     + S+I    + G      E+F ++  K L   VV Y +LIH    +G+++
Sbjct: 542 SDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLE 601

Query: 332 KENYLLLSMEENGCALDVDTFNTLM 356
           +       M+E G   +V T+N+L+
Sbjct: 602 RAFIYFSEMQEKGILPNVITYNSLI 626



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 155/323 (47%), Gaps = 30/323 (9%)

Query: 49  KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108
           KM      P+V  C+ ++  LR    M+  +++++ M    G+FG   KP +  Y +L+D
Sbjct: 189 KMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTM----GEFG--IKPTIVTYNTLLD 242

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNP 160
             CK   V Q  DL  EM+ +G   N +        L KK +  +A  L+  M++ GL  
Sbjct: 243 SYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKV 302

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
             +TY PL+ GY   G +  A++L + M  KG  P V +Y+  I G CK   + +AM   
Sbjct: 303 SAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQL 362

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
            +M+ N            N++P+  + N  I G C+ G++++   LF   E+ +  LF  
Sbjct: 363 SDMLAN------------NLLPDVVSYNTLIYGYCRLGNLMKAFLLFD--ELRSIYLFPT 408

Query: 281 I--FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           I  +N+L+ G C+ G  E+A +L  ++  + +  D+V Y IL++   K G +        
Sbjct: 409 IVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFD 468

Query: 339 SMEENGCALDVDTFNTLMISFLQ 361
            M   G  LD   + T ++  L+
Sbjct: 469 EMLHEGLELDSYAYATRIVGELK 491



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 155/345 (44%), Gaps = 26/345 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+  +C  G ++    L+ +M   GC PN  T + LI GL + G       L  E
Sbjct: 235 VTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGE 294

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+       G+ K + + Y  LI G     ++ +   L  EM  KG +            
Sbjct: 295 MLKT-----GL-KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYG 348

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  ++ +A + L  M+   L P + +Y  L+ GYC +G +  A  LFD +      P 
Sbjct: 349 LCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPT 408

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ L++G C+   +E A  +  EMI  G            + P+  T  I ++G CK
Sbjct: 409 IVTYNTLLDGLCRQGELEVAQQLKVEMINEG------------IAPDIVTYTILVNGSCK 456

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +    E F  +     EL    + + I G  K G    A  L  ++  K    D++ 
Sbjct: 457 MGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLII 516

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           YN+++  L K G +++ + LL  M  +G   D  T+ +++ + L+
Sbjct: 517 YNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLE 561



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 159/364 (43%), Gaps = 39/364 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            T+NS I G C  G + DA Q +  M      P+V + +TLI G  R GN+     L  E
Sbjct: 340 ATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDE 399

Query: 85  MVNGMGDFGGIYK-PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLL-- 137
           + +       IY  P +  Y +L+DGLC+   ++  + L +EM ++GI  +    T+L  
Sbjct: 400 LRS-------IYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             CK   L  A    + M+  GL    + Y   + G   +G  + A +L + M  KGF P
Sbjct: 453 GSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPP 512

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIF 232
           D+  Y+V+++G CK  N+EEA  + ++M+ +G                        ++IF
Sbjct: 513 DLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIF 572

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            EM    + P   T  + I G    G +      F  ++       V  +NSLI G CK 
Sbjct: 573 YEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKV 632

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              + A   F ++  K +  +  +Y ILI+     G  ++   L   M + G   D  T 
Sbjct: 633 RRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTH 692

Query: 353 NTLM 356
           + L+
Sbjct: 693 SALL 696



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 124/278 (44%), Gaps = 37/278 (13%)

Query: 105 SLIDGLCKDRLVDQTKD---LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPV 161
           S+ D + K RL    K+   +   ++DK +         +K VE  R    M + G+ P 
Sbjct: 185 SVFDKMIKSRLSPDVKNCNRILRILRDKDL--------MSKAVEVYRT---MGEFGIKPT 233

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           I TY  LL+ YC  GKV   + L   M R+G  P+  +Y+VLING  K    E+A  +  
Sbjct: 234 IVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIG 293

Query: 222 EMILNGFK-----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           EM+  G K                        +  EM L    P   T N FI GLCK G
Sbjct: 294 EMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLG 353

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + + M+    +  +N    V  +N+LI G C+ G    A  LF++L    L   +V YN
Sbjct: 354 RMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYN 413

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            L+  L ++G+++    L + M   G A D+ T+  L+
Sbjct: 414 TLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILV 451



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 127/300 (42%), Gaps = 75/300 (25%)

Query: 5   LGALM-AFGSF--IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           LG LM AF  F  +R  Y     VT+N+L+ G C +G +  A QL  +M   G  P++ T
Sbjct: 387 LGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVT 446

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVN------------------GMGD-----------F 92
              L+ G  + G++++  +   EM++                   +GD            
Sbjct: 447 YTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEML 506

Query: 93  GGIYKPNVFCYGSLIDGLCK-----------DRLVD------------------------ 117
              + P++  Y  ++DGLCK            ++V                         
Sbjct: 507 AKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLR 566

Query: 118 QTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           + +++F EM  KG+  + +           K +L  A      M ++G+ P + TY  L+
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLI 626

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           NG C V +++ A   F  M  KG  P+ +SY++LIN  C   N +EA+++ ++M+  G +
Sbjct: 627 NGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQ 686



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 14/198 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + + +N ++ G C  GN+ +AS+L++KM + G  P+  T  ++I      G +    +
Sbjct: 511 PPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGRE 570

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           +  EM++      G+  P+V  Y  LI G      +++    F EM++KGI  N +    
Sbjct: 571 IFYEMLSK-----GL-TPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNS 624

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  ++ +A      M+++G+ P  ++YT L+N  C +G    A++L+  M  +G
Sbjct: 625 LINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRG 684

Query: 193 FMPDVFSYSVLINGYCKN 210
             PD  ++S L+    K+
Sbjct: 685 VQPDSCTHSALLKQLGKD 702



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 100/230 (43%), Gaps = 32/230 (13%)

Query: 136 LLCKKTKLVEANRLLE---LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           + C   +++  N L+     +M+R +N  +     +L G C+  +V+V I          
Sbjct: 117 VFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKIL--------- 167

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
                    +LI  Y K   VE+ ++V            F++M    + P+   CN  + 
Sbjct: 168 --------DLLIWVYSKKSMVEQCLSV------------FDKMIKSRLSPDVKNCNRILR 207

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            L     + + +E++ T+     +  +  +N+L+   CK G  +   +L +++  +    
Sbjct: 208 ILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAP 267

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + V YN+LI+ L K+G+ ++   L+  M + G  +   T+N L+  +  K
Sbjct: 268 NDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNK 317


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 151/321 (47%), Gaps = 26/321 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N ++ G C EG + DA + +K + ++GC PN  + + ++ GL          +  +E
Sbjct: 103 VTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERW----EDAEE 158

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++  MG  G    PNV  +  LI  LC+  LV+   ++  ++   G   N+L        
Sbjct: 159 LMGEMGQKG--CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHA 216

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+ +A   L+LM+ RG  P I +Y  LL   C  G+V+VA+ L   +  KG  P 
Sbjct: 217 FCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPV 276

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + SY+ +I+G  K    +EA+ +  EM+  G +            P+  T +    GLC+
Sbjct: 277 LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ------------PDIITYSTIAAGLCR 324

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + + +  F  ++         ++N++I G CK      A +LF  +     + +   
Sbjct: 325 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 384

Query: 317 YNILIHALGKEGQIKKENYLL 337
           Y ILI  L  EG IK+   LL
Sbjct: 385 YTILIEGLAYEGLIKEARDLL 405



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 166/369 (44%), Gaps = 28/369 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +   AL      +RR   P + VT+  L++  C     + A +L+ +M   GC P++ T 
Sbjct: 47  RTANALAVLDEMLRRRCVP-DVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTY 105

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + ++ G+ + G ++  +    E +  +  +G   +PN   Y  ++ GLC     +  ++L
Sbjct: 106 NVVVNGICQEGRVDDAI----EFLKNLPSYG--CEPNTVSYNIVLKGLCTAERWEDAEEL 159

Query: 123 FMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM  KG   N        + LC+K  +  A  +LE + + G  P   +Y PLL+ +C 
Sbjct: 160 MGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCK 219

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
             K++ A+A  D M  +G  PD+ SY+ L+   C++  V+ A+            ++ ++
Sbjct: 220 QKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAV------------ELLHQ 267

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           +K     P   + N  IDGL K G   E +EL   +     +  +  ++++  G C+   
Sbjct: 268 LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 327

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A   F K+    +  + V YN +I  L K  +      L   M  NGC  +  T+ T
Sbjct: 328 IEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY-T 386

Query: 355 LMISFLQKE 363
           ++I  L  E
Sbjct: 387 ILIEGLAYE 395



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 29/347 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           + +N+++ G+C  G +  A +LV +M      P+  T +TLI GL   G     L +  E
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMPV---EPDAYTYNTLIRGLCGRGRTANALAVLDE 57

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+           P+V  Y  L++  CK     Q   L  EM+DKG   + +        
Sbjct: 58  MLRRR------CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 111

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C++ ++ +A   L+ +   G  P   +Y  +L G C   +   A  L   M +KG  P+
Sbjct: 112 ICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPN 171

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V ++++LI+  C+   VE A+ V  ++   G              P + + N  +   CK
Sbjct: 172 VVTFNMLISFLCRKGLVEPALEVLEQIPKYG------------CTPNSLSYNPLLHAFCK 219

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + + M     +    C   +  +N+L+   C+ G  ++A EL ++L  K     +++
Sbjct: 220 QKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLIS 279

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           YN +I  L K G+ K+   LL  M   G   D+ T++T+     +++
Sbjct: 280 YNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRED 326



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 16/228 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL- 81
           N +++N L+  FC +  +  A   +  M + GC P++ + +TL+T L R+G +++ ++L 
Sbjct: 206 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 265

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           HQ    G         P +  Y ++IDGL K     +  +L  EM  KG+  + +     
Sbjct: 266 HQLKDKGCA-------PVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTI 318

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ ++ +A R    +   G+ P    Y  ++ G C   + + AI LF  M   G 
Sbjct: 319 AAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGC 378

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           MP+  +Y++LI G      ++EA ++  E+     ++I  ++ L +V 
Sbjct: 379 MPNESTYTILIEGLAYEGLIKEARDLLDELCSRAGEEILLDVHLIDVA 426


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 26/321 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N ++ G C EG + DA + +K + ++GC PN  + + ++ GL             +E
Sbjct: 28  VTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDA----EE 83

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++  MG  G    PNV  +  LI  LC+  LV+   ++  ++   G   N+L        
Sbjct: 84  LMGEMGQKG--CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHA 141

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+ +A   L+LM+ RG  P I +Y  LL   C  G+V+VA+ L   +  KG  P 
Sbjct: 142 FCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPV 201

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + SY+ +I+G  K    +EA+ +  EM+  G +            P+  T +    GLC+
Sbjct: 202 LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ------------PDIITYSTIAAGLCR 249

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + + +  F  ++         ++N++I G CK      A +LF  +     + +   
Sbjct: 250 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 309

Query: 317 YNILIHALGKEGQIKKENYLL 337
           Y ILI  L  EG IK+   LL
Sbjct: 310 YTILIEGLAYEGLIKEARDLL 330



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 26/297 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++N ++KG C      DA +L+ +M   GC PNV T + LI+ L R G +   L   
Sbjct: 61  NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPAL--- 117

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL- 136
            E++  +  +G    PN   Y  L+   CK + +D+       M  +G     ++ NTL 
Sbjct: 118 -EVLEQIPKYG--CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLL 174

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  ++  A  LL  +  +G  PV+ +Y  +++G    GK   A+ L + M  KG  
Sbjct: 175 TALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ 234

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ +YS +  G C+   +E+A+            + F +++   + P T   N  I GL
Sbjct: 235 PDIITYSTIAAGLCREDRIEDAI------------RAFGKVQDMGIRPNTVLYNAIILGL 282

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           CK       ++LF  +  + C      +  LI G    G+ + A +L ++L  + +V
Sbjct: 283 CKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 339



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 152/337 (45%), Gaps = 27/337 (8%)

Query: 35  CMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGG 94
           C     + A +L+ +M   GC P++ T + ++ G+ + G ++  +    E +  +  +G 
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAI----EFLKNLPSYG- 57

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEA 146
             +PN   Y  ++ GLC     +  ++L  EM  KG   N        + LC+K  +  A
Sbjct: 58  -CEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPA 116

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             +LE + + G  P   +Y PLL+ +C   K++ A+A  D M  +G  PD+ SY+ L+  
Sbjct: 117 LEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 176

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            C++  V+ A+            ++ +++K     P   + N  IDGL K G   E +EL
Sbjct: 177 LCRSGEVDVAV------------ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALEL 224

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +     +  +  ++++  G C+    E A   F K+    +  + V YN +I  L K
Sbjct: 225 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 284

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             +      L   M  NGC  +  T+ T++I  L  E
Sbjct: 285 RRETHSAIDLFAYMIGNGCMPNESTY-TILIEGLAYE 320



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 120/258 (46%), Gaps = 26/258 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTFN LI   C +G +  A ++++++  +GC PN  + + L+    +   M+  + 
Sbjct: 94  PPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMA 153

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
               MV+      G Y P++  Y +L+  LC+   VD   +L  ++KDKG     I+ NT
Sbjct: 154 FLDLMVS-----RGCY-PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNT 207

Query: 136 L---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           +   L K  K  EA  LL  M+ +GL P I TY+ +  G C   ++  AI  F  +   G
Sbjct: 208 VIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMG 267

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+   Y+ +I G CK      A+++   MI NG             +P   T  I I+
Sbjct: 268 IRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNG------------CMPNESTYTILIE 315

Query: 253 GLCKNGHVLEVMELFPTL 270
           GL   G + E  +L   L
Sbjct: 316 GLAYEGLIKEARDLLDEL 333



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
             K   AL      + +  +P + +T++++  G C E  I DA +   K+   G RPN  
Sbjct: 215 AGKTKEALELLNEMVSKGLQP-DIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTV 273

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
             + +I GL +    +  + L   M+      G    PN   Y  LI+GL  + L+ + +
Sbjct: 274 LYNAIILGLCKRRETHSAIDLFAYMI------GNGCMPNESTYTILIEGLAYEGLIKEAR 327

Query: 121 DLFMEMKDKGINANTLLCK 139
           DL  E+  +G+   +L+ K
Sbjct: 328 DLLDELCSRGVVRKSLINK 346


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/385 (29%), Positives = 172/385 (44%), Gaps = 38/385 (9%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV   L       RR   P NDVT+N LI G   +G    A  L+ +M   G + +  T 
Sbjct: 249 KVQQGLDLLSEMQRRGCAP-NDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTY 307

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVD---Q 118
           + LI G    G +   L L +EMV       G   P V  Y S I GLCK  R+ D   Q
Sbjct: 308 NPLIYGYFNKGMLAEALSLQEEMV-----LKGA-SPTVATYNSFIYGLCKLGRMSDAMQQ 361

Query: 119 TKDLFM-EMKDKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             D+    +    ++ NTL+   C+   L++A  L + +    L P I TY  LL+G C 
Sbjct: 362 LSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCR 421

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----- 229
            G++ VA  L   M  +G  PD+ +Y++L+NG CK  ++  A     EM+  G +     
Sbjct: 422 QGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYA 481

Query: 230 ---KIFNEMKLCNVV---------------PETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
              +I  E+KL +                 P+    N+ +DGLCK G++ E  EL   + 
Sbjct: 482 YATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMV 541

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
                     + S+I    + G      E+F ++  K L   VV Y +LIH    +G+++
Sbjct: 542 SDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLE 601

Query: 332 KENYLLLSMEENGCALDVDTFNTLM 356
           +       M+E G   +V T+N+L+
Sbjct: 602 RAFIYFSEMQEKGILPNVITYNSLI 626



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 155/323 (47%), Gaps = 30/323 (9%)

Query: 49  KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108
           KM      P+V  C+ ++  LR    M+  +++++ M    G+FG   KP +  Y +L+D
Sbjct: 189 KMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTM----GEFG--IKPTIVTYNTLLD 242

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNP 160
             CK   V Q  DL  EM+ +G   N +        L KK +  +A  L+  M++ GL  
Sbjct: 243 SYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKV 302

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
             +TY PL+ GY   G +  A++L + M  KG  P V +Y+  I G CK   + +AM   
Sbjct: 303 SAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQL 362

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
            +M+ N            N++P+  + N  I G C+ G++++   LF   E+ +  LF  
Sbjct: 363 SDMLAN------------NLLPDVVSYNTLIYGYCRLGNLMKAFLLFD--ELRSIYLFPT 408

Query: 281 I--FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           I  +N+L+ G C+ G  E+A +L  ++  + +  D+V Y IL++   K G +        
Sbjct: 409 IVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFD 468

Query: 339 SMEENGCALDVDTFNTLMISFLQ 361
            M   G  LD   + T ++  L+
Sbjct: 469 EMLHEGLELDSYAYATRIVGELK 491



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 155/346 (44%), Gaps = 28/346 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+  +C  G ++    L+ +M   GC PN  T + LI GL + G       L  E
Sbjct: 235 VTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGE 294

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           M+  G+       K + + Y  LI G     ++ +   L  EM  KG +           
Sbjct: 295 MLKTGL-------KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIY 347

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LCK  ++ +A + L  M+   L P + +Y  L+ GYC +G +  A  LFD +      P
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFP 407

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
            + +Y+ L++G C+   +E A  +  EMI  G            + P+  T  I ++G C
Sbjct: 408 TIVTYNTLLDGLCRQGELEVAQQLKVEMINEG------------IAPDIVTYTILVNGSC 455

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G +    E F  +     EL    + + I G  K G    A  L  ++  K    D++
Sbjct: 456 KMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLI 515

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            YN+++  L K G +++ + LL  M  +G   D  T+ +++ + L+
Sbjct: 516 IYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLE 561



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 159/364 (43%), Gaps = 39/364 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            T+NS I G C  G + DA Q +  M      P+V + +TLI G  R GN+     L  E
Sbjct: 340 ATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDE 399

Query: 85  MVNGMGDFGGIYK-PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLL-- 137
           + +       IY  P +  Y +L+DGLC+   ++  + L +EM ++GI  +    T+L  
Sbjct: 400 LRS-------IYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             CK   L  A    + M+  GL    + Y   + G   +G  + A +L + M  KGF P
Sbjct: 453 GSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPP 512

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIF 232
           D+  Y+V+++G CK  N+EEA  + ++M+ +G                        ++IF
Sbjct: 513 DLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIF 572

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            EM    + P   T  + I G    G +      F  ++       V  +NSLI G CK 
Sbjct: 573 YEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKV 632

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              + A   F ++  K +  +  +Y ILI+     G  ++   L   M + G   D  T 
Sbjct: 633 RRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTH 692

Query: 353 NTLM 356
           + L+
Sbjct: 693 SALL 696



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 124/278 (44%), Gaps = 37/278 (13%)

Query: 105 SLIDGLCKDRLVDQTKD---LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPV 161
           S+ D + K RL    K+   +   ++DK +         +K VE  R    M + G+ P 
Sbjct: 185 SVFDKMIKSRLSPDVKNCNRILRILRDKDL--------MSKAVEVYRT---MGEFGIKPT 233

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
           I TY  LL+ YC  GKV   + L   M R+G  P+  +Y+VLING  K    E+A  +  
Sbjct: 234 IVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIG 293

Query: 222 EMILNGFK-----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           EM+  G K                        +  EM L    P   T N FI GLCK G
Sbjct: 294 EMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLG 353

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + + M+    +  +N    V  +N+LI G C+ G    A  LF++L    L   +V YN
Sbjct: 354 RMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYN 413

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            L+  L ++G+++    L + M   G A D+ T+  L+
Sbjct: 414 TLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILV 451



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 127/300 (42%), Gaps = 75/300 (25%)

Query: 5   LGALM-AFGSF--IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           LG LM AF  F  +R  Y     VT+N+L+ G C +G +  A QL  +M   G  P++ T
Sbjct: 387 LGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVT 446

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVN------------------GMGD-----------F 92
              L+ G  + G++++  +   EM++                   +GD            
Sbjct: 447 YTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEML 506

Query: 93  GGIYKPNVFCYGSLIDGLCK-----------DRLVD------------------------ 117
              + P++  Y  ++DGLCK            ++V                         
Sbjct: 507 AKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLR 566

Query: 118 QTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           + +++F EM  KG+  + +           K +L  A      M ++G+ P + TY  L+
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLI 626

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           NG C V +++ A   F  M  KG  P+ +SY++LIN  C   N +EA+++ ++M+  G +
Sbjct: 627 NGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQ 686



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 14/208 (6%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + + +N ++ G C  GN+ +AS+L++KM + G  P+  T  ++I      G +    +
Sbjct: 511 PPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGRE 570

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           +  EM++      G+  P+V  Y  LI G      +++    F EM++KGI  N +    
Sbjct: 571 IFYEMLSK-----GL-TPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNS 624

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  ++ +A      M+++G+ P  ++YT L+N  C +G    A++L+  M  +G
Sbjct: 625 LINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRG 684

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVS 220
             PD  ++S L+    K+  ++     S
Sbjct: 685 VQPDSCTHSALLKQLGKDCKLQAVHGTS 712



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 100/230 (43%), Gaps = 32/230 (13%)

Query: 136 LLCKKTKLVEANRLLE---LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           + C   +++  N L+     +M+R +N  +     +L G C+  +V+V I          
Sbjct: 117 VFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKI---------- 166

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
                    +LI  Y K   VE+ ++V            F++M    + P+   CN  + 
Sbjct: 167 -------LDLLIWVYSKKSMVEQCLSV------------FDKMIKSRLSPDVKNCNRILR 207

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            L     + + +E++ T+     +  +  +N+L+   CK G  +   +L +++  +    
Sbjct: 208 ILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAP 267

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + V YN+LI+ L K+G+ ++   L+  M + G  +   T+N L+  +  K
Sbjct: 268 NDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNK 317


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 26/321 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N ++ G C EG + DA + +K + ++GC PN  + + ++ GL             +E
Sbjct: 229 VTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDA----EE 284

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++  MG  G    PNV  +  LI  LC+  LV+   ++  ++   G   N+L        
Sbjct: 285 LMGEMGQKG--CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHA 342

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+ +A   L+LM+ RG  P I +Y  LL   C  G+V+VA+ L   +  KG  P 
Sbjct: 343 FCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPV 402

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + SY+ +I+G  K    +EA+ +  EM+  G +            P+  T +    GLC+
Sbjct: 403 LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ------------PDIITYSTIAAGLCR 450

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + + +  F  ++         ++N++I G CK      A +LF  +     + +   
Sbjct: 451 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 510

Query: 317 YNILIHALGKEGQIKKENYLL 337
           Y ILI  L  EG IK+   LL
Sbjct: 511 YTILIEGLAYEGLIKEARDLL 531



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 166/369 (44%), Gaps = 28/369 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +   AL      +RR   P + VT+  L++  C     + A +L+ +M   GC P++ T 
Sbjct: 173 RTANALAVLDEMLRRRCVP-DVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTY 231

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + ++ G+ + G ++  +    E +  +  +G   +PN   Y  ++ GLC     +  ++L
Sbjct: 232 NVVVNGICQEGRVDDAI----EFLKNLPSYG--CEPNTVSYNIVLKGLCTAERWEDAEEL 285

Query: 123 FMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM  KG   N        + LC+K  +  A  +LE + + G  P   +Y PLL+ +C 
Sbjct: 286 MGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCK 345

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
             K++ A+A  D M  +G  PD+ SY+ L+   C++  V+ A+            ++ ++
Sbjct: 346 QKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAV------------ELLHQ 393

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           +K     P   + N  IDGL K G   E +EL   +     +  +  ++++  G C+   
Sbjct: 394 LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 453

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A   F K+    +  + V YN +I  L K  +      L   M  NGC  +  T+ T
Sbjct: 454 IEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY-T 512

Query: 355 LMISFLQKE 363
           ++I  L  E
Sbjct: 513 ILIEGLAYE 521



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 146/334 (43%), Gaps = 32/334 (9%)

Query: 31  IKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMG 90
           ++     G + +A +LV        RP+  TC  LI  L  +G          E    + 
Sbjct: 72  LRSLVRRGELDEALRLVGSAR----RPDAGTCAALIKKLSASGRT-------AEARRVLA 120

Query: 91  DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANTL---LCKKTKLVE 145
             G    P+V  Y +++ G C    +D  + L  EM  +      NTL   LC + +   
Sbjct: 121 ACG----PDVMAYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTAN 176

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  +L+ M++R   P + TYT LL   C       A+ L D M  KG  PD+ +Y+V++N
Sbjct: 177 ALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVN 236

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G C+   V++A+   + +   G +            P T + NI + GLC      +  E
Sbjct: 237 GICQEGRVDDAIEFLKNLPSYGCE------------PNTVSYNIVLKGLCTAERWEDAEE 284

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L   +    C   V  FN LI   C+ G+ E A E+  ++       + ++YN L+HA  
Sbjct: 285 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFC 344

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           K+ ++ K    L  M   GC  D+ ++NTL+ + 
Sbjct: 345 KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 378



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 29/347 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           + +N+++ G+C  G +  A +LV +M      P+  T +TLI GL   G     L +  E
Sbjct: 127 MAYNAMVAGYCGAGQLDAARRLVAEMPV---EPDAYTYNTLIRGLCGRGRTANALAVLDE 183

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+           P+V  Y  L++  CK     Q   L  EM+DKG   + +        
Sbjct: 184 MLRRR------CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 237

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C++ ++ +A   L+ +   G  P   +Y  +L G C   +   A  L   M +KG  P+
Sbjct: 238 ICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPN 297

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V ++++LI+  C+   VE A+ V  ++   G              P + + N  +   CK
Sbjct: 298 VVTFNMLISFLCRKGLVEPALEVLEQIPKYG------------CTPNSLSYNPLLHAFCK 345

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + + M     +    C   +  +N+L+   C+ G  ++A EL ++L  K     +++
Sbjct: 346 QKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLIS 405

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           YN +I  L K G+ K+   LL  M   G   D+ T++T+     +++
Sbjct: 406 YNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRED 452



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 18/223 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL- 81
           N +++N L+  FC +  +  A   +  M + GC P++ + +TL+T L R+G +++ ++L 
Sbjct: 332 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 391

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           HQ    G         P +  Y ++IDGL K     +  +L  EM  KG+  + +     
Sbjct: 392 HQLKDKGCA-------PVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTI 444

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ ++ +A R    +   G+ P    Y  ++ G C   + + AI LF  M   G 
Sbjct: 445 AAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGC 504

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--KKIFNE 234
           MP+  +Y++LI G      ++EA ++  E+   G   K + N+
Sbjct: 505 MPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINK 547


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 168/365 (46%), Gaps = 36/365 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            + SLI  +   G  R+A  + KK+   GCRP + T + +   L   G M +       +
Sbjct: 222 AYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVI---LNVYGKMGMPWSKIAGL 278

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           V+ M   G    P+++ Y +LI    +  L ++  ++F EMK  G     +  N LL   
Sbjct: 279 VDSMKSSG--VAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVY 336

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K  +  EA  +L+ M   G  P I TY  L++ Y   G ++ A+ L   M +KG  PDV
Sbjct: 337 GKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDV 396

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNE 234
           F+Y+ L++G+ K    + AM V  EM + G +                       K+F E
Sbjct: 397 FTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEE 456

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           +K+C  VP+  T N  +    +NG   EV  +F  ++ +      + FN+LI    + G 
Sbjct: 457 IKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGF 516

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           F+ A  ++ ++    +  D+  YN ++ AL + G  ++   +L  M++  C  +  T+ +
Sbjct: 517 FDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCS 576

Query: 355 LMISF 359
           L+ ++
Sbjct: 577 LLHAY 581



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 139/342 (40%), Gaps = 52/342 (15%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F    R  + P  D TFN+LI  +   G    A  + ++M   G  P+++T + ++  L 
Sbjct: 489 FKEMKRAGFVPERD-TFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALA 547

Query: 71  RTGNMNLTLKLHQEMVNGMGD-----------------------------FGGIYKPNVF 101
           R G    + K+  EM +G                                + GI +P   
Sbjct: 548 RGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAV 607

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELM 153
              +L+    K  L+ +T+  F+E++++G + +        ++  ++  + + N +L  +
Sbjct: 608 LLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFI 667

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
              G  P + TY  L+  Y        +  +   +  KG  PD+ S++ +I  YC+N  +
Sbjct: 668 KDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRM 727

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           +EA             +IF EMK   + P+  T N FI     +   +E +++   +  +
Sbjct: 728 KEA------------SRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKN 775

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
            C+     +NSLI   CK    + AS   + L  +NL   V 
Sbjct: 776 GCKPNQNTYNSLIDWFCKLNRRDEASSFISNL--RNLDPSVT 815



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 167/395 (42%), Gaps = 60/395 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLI  +  +G + +A +L  +M   G +P+V T  TL++G  +TG  +  +K+ +E
Sbjct: 362 VTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEE 421

Query: 85  M-VNG-----------------MGDFGGIYK-----------PNVFCYGSLIDGLCKDRL 115
           M V G                  G+F  + K           P++  + +L+    ++ +
Sbjct: 422 MRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGM 481

Query: 116 VDQTKDLFMEMKDKGI-----NANTLLCKKTK---LVEANRLLELMMQRGLNPVIFTYTP 167
             +   +F EMK  G        NTL+   ++     +A  +   M+  G+ P + TY  
Sbjct: 482 DSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNA 541

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---- 223
           +L      G    +  +   M      P+  +Y  L++ Y     VE    ++ E+    
Sbjct: 542 VLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGI 601

Query: 224 -------------------ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
                              +L   ++ F E++     P+  T N  +    +   V +  
Sbjct: 602 IEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTN 661

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           E+   ++ S     +  +NSL+    +   FE + ++  ++  K +  D++++N +I A 
Sbjct: 662 EILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAY 721

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + G++K+ + +   M++ G A DV T+NT + S+
Sbjct: 722 CRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASY 756



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 153/372 (41%), Gaps = 37/372 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N+L+  +      R+A +++K+M   G  P++ T ++LI+   R G ++  ++L 
Sbjct: 325 DKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELK 384

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
            +MV       GI KP+VF Y +L+ G  K    D    +F EM+  G   N        
Sbjct: 385 SQMVK-----KGI-KPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALI 438

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            +   +   VE  ++ E +      P I T+  LL  +   G  +    +F  M R GF+
Sbjct: 439 KMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV 498

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
           P+  +++ LI+ Y +    ++AM + R M+  G                        +K+
Sbjct: 499 PERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKV 558

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
             EMK     P   T    +        V  +  L   +     E    +  +L+    K
Sbjct: 559 LAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSK 618

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
             +       F +L  +    D+   N ++   G+   + K N +L  ++++G    + T
Sbjct: 619 SDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTT 678

Query: 352 FNTLMISFLQKE 363
           +N+LM  + + E
Sbjct: 679 YNSLMYMYSRTE 690



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 30/249 (12%)

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           ++L K+ +   A  LL  +   G++  I+ YT L+  Y   G+   A+ +F  +  +G  
Sbjct: 193 SVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCR 252

Query: 195 PDVFSYSVLINGY-------CKNFNVEEAMNVS-----------------REMILNGFKK 230
           P + +Y+V++N Y        K   + ++M  S                 R  +     +
Sbjct: 253 PTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAE 312

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F EMK     P+  T N  +D   K+    E ME+   +E S     +  +NSLI    
Sbjct: 313 VFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYA 372

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE---NGCAL 347
           + G+ + A EL +++  K +  DV  Y  L+    K G   K++Y +   EE    GC  
Sbjct: 373 RDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTG---KDDYAMKVFEEMRVAGCQP 429

Query: 348 DVDTFNTLM 356
           ++ TFN L+
Sbjct: 430 NICTFNALI 438



 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           + I  L K G       L   L      + +  + SLI      G +  A  +F KL  +
Sbjct: 190 VIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEE 249

Query: 309 NLVADVVAYNILIHALGKEG-QIKKENYLLLSMEENGCALDVDTFNTLMIS 358
                ++ YN++++  GK G    K   L+ SM+ +G A D+ T+NTL+ S
Sbjct: 250 GCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISS 300


>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 166/348 (47%), Gaps = 26/348 (7%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           +PLN  +FN +I GFC  G + +A Q++++M + G  P+V +   LI      G++   L
Sbjct: 387 QPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCL 446

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-- 137
            L +EM +         KP++  Y SLI GLCK  ++    D+F  +       ++ +  
Sbjct: 447 DLMEEMEHSQ------IKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYE 500

Query: 138 ------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 C +  +  A +LLE M+   L P  F+   L+ GY  +G  + A+ +F++M R 
Sbjct: 501 TLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRD 560

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PD  + + +++G C+    +EA+ +  +   +GF          N+ P ++  N  I
Sbjct: 561 GIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGF----------NLNPHSY--NAII 608

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK G+    +EL P +   N    V  +++LI G  K   F+ A  LF ++    + 
Sbjct: 609 YKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGIT 668

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            ++  Y IL+       ++ +   +   M+E G  LD  ++ TL++ F
Sbjct: 669 FNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVGF 716



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 157/363 (43%), Gaps = 39/363 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++ SLI G C +  +++A  +   +    C+ + T  +TLI G    G+M+  +KL +E
Sbjct: 462 VSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEE 521

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC----- 138
           M+ N +        P  F   SLI G  K  L DQ  ++F  M   GI  +T+ C     
Sbjct: 522 MICNEL-------VPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILD 574

Query: 139 ---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
              +     EA  LLE   + G N    +Y  ++   C  G    A+ L   M ++  +P
Sbjct: 575 GSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLP 634

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIF 232
            V +YS LI+G+ K  N + A+N+   M+  G                          IF
Sbjct: 635 SVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIF 694

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            EMK   +  +  +    I G C N  + +   LF  +    C   V  +  +I G CK 
Sbjct: 695 KEMKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGFCKS 754

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              ++A+ +F+K++  +++ DVV Y +LI    K G   + + L   M++ G   D  T 
Sbjct: 755 NRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGVLPDDITH 814

Query: 353 NTL 355
           N L
Sbjct: 815 NVL 817



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 169/434 (38%), Gaps = 99/434 (22%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V F+ LI  F     + +A  +       G  P++ TC+ L+  L     +    ++ +E
Sbjct: 248 VVFDVLISVFASNSMLENALDVFSNAKHVGLEPDIRTCNFLLKCLVEANRVEFVRRVFEE 307

Query: 85  MVN-------------------------GMGD----FGGIY----KPNVFCYGSLIDGLC 111
           + +                         GM       G IY    KP V  Y + I GLC
Sbjct: 308 LKDRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYSTYIHGLC 367

Query: 112 KDRLVDQTKDLF--MEMKDKGINANTL------LCKKTKLVEANRLLELMMQRGLNPVIF 163
           K   V+    L   +   ++ +N+++        CK+ ++ EA ++LE M   G+ P ++
Sbjct: 368 KVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVY 427

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK-------------- 209
           +Y+ L+N +C  G V   + L + M      P + SY+ LI+G CK              
Sbjct: 428 SYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSI 487

Query: 210 ---------------------NFNVEEAMNVSREMILN--------------GFKK---- 230
                                  +++ A+ +  EMI N              G+ K    
Sbjct: 488 GASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLF 547

Query: 231 -----IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
                +FN M    + P+T  CN  +DG C+ G+  E + L    +     L    +N++
Sbjct: 548 DQALEVFNAMLRDGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAI 607

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I   CK G  E A EL  ++  +N++  VV Y+ LI    K+   K+   L   M + G 
Sbjct: 608 IYKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGI 667

Query: 346 ALDVDTFNTLMISF 359
             ++ T+  LM  F
Sbjct: 668 TFNIATYTILMSIF 681



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 155/369 (42%), Gaps = 39/369 (10%)

Query: 14  FIRRCYRPLND-------VTFNSLIKGFCME----GNIRDASQLVKKMATFGCRPNVTTC 62
           F+RR +  L D        T+  ++  +C +      +R A+ ++ K+   G +P V T 
Sbjct: 300 FVRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTY 359

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP-NVFCYGSLIDGLCKDRLVDQTKD 121
            T I GL + GN+   L L       + +     +P N   +  +I G CK   V +   
Sbjct: 360 STYIHGLCKVGNVEAALML-------IRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQ 412

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           +  EMK  GI  +           C K  +++   L+E M    + P I +YT L++G C
Sbjct: 413 VLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLC 472

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
               +  A+ +F S+       D   Y  LI+G+C   +++ A+ +  EMI N       
Sbjct: 473 KKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICN------- 525

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                 +VP  F+C   I G  K G   + +E+F  +            N ++ G C+ G
Sbjct: 526 -----ELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGSCRAG 580

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
            F+ A  L           +  +YN +I+ L KEG  ++   LL  M +      V  ++
Sbjct: 581 YFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSVVNYS 640

Query: 354 TLMISFLQK 362
           TL+  F ++
Sbjct: 641 TLISGFAKQ 649



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 26/236 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  ++N++I   C EG    A +L+ +M      P+V    TLI+G  +  N    + L
Sbjct: 599 LNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNL 658

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
              MV     F      N+  Y  L+        + +   +F EMK++G     I+  TL
Sbjct: 659 FTRMVKVGITF------NIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTL 712

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   C   ++ +A  L E M + G +P + TYT +++G+C   ++++A  +FD M R   
Sbjct: 713 IVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMNRDSV 772

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
           +PDV +Y+VLI+ Y K+   ++A             K+++ MK   V+P+  T N+
Sbjct: 773 IPDVVTYTVLIDWYHKHGYFDQA------------HKLYDVMKDKGVLPDDITHNV 816



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 10/207 (4%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           GL P I T   LL       +V     +F+ +  +G  P++++Y++++N YC +   +  
Sbjct: 277 GLEPDIRTCNFLLKCLVEANRVEFVRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAG 336

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           M  +  ++     KI+   +     P   T + +I GLCK G+V   + L   L  +N  
Sbjct: 337 MRQAAVIL----GKIYRSGE----KPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQP 388

Query: 277 LFVEIFNSLIRGCCKFG-IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           L    FN +I G CK G +FE A ++  ++    ++ DV +Y+ILI+A   +G + K   
Sbjct: 389 LNSHSFNDVIYGFCKRGEVFE-ALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLD 447

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQK 362
           L+  ME +     + ++ +L+    +K
Sbjct: 448 LMEEMEHSQIKPSIVSYTSLIHGLCKK 474


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 168/365 (46%), Gaps = 36/365 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            + SLI  +   G  R+A  + KK+   GCRP + T + +   L   G M +       +
Sbjct: 222 AYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVI---LNVYGKMGMPWSKIAGL 278

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           V+ M   G    P+++ Y +LI    +  L ++  ++F EMK  G     +  N LL   
Sbjct: 279 VDSMKSSG--VAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVY 336

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K  +  EA  +L+ M   G  P I TY  L++ Y   G ++ A+ L   M +KG  PDV
Sbjct: 337 GKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDV 396

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNE 234
           F+Y+ L++G+ K    + AM V  EM + G +                       K+F E
Sbjct: 397 FTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEE 456

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           +K+C  VP+  T N  +    +NG   EV  +F  ++ +      + FN+LI    + G 
Sbjct: 457 IKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGF 516

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           F+ A  ++ ++    +  D+  YN ++ AL + G  ++   +L  M++  C  +  T+ +
Sbjct: 517 FDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCS 576

Query: 355 LMISF 359
           L+ ++
Sbjct: 577 LLHAY 581



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 167/395 (42%), Gaps = 60/395 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLI  +  +G + +A +L  +M   G +P+V T  TL++G  +TG  +  +K+ +E
Sbjct: 362 VTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEE 421

Query: 85  M-VNG-----------------MGDFGGIYK-----------PNVFCYGSLIDGLCKDRL 115
           M V G                  G+F  + K           P++  + +L+    ++ +
Sbjct: 422 MRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGM 481

Query: 116 VDQTKDLFMEMKDKGI-----NANTLLCKKTK---LVEANRLLELMMQRGLNPVIFTYTP 167
             +   +F EMK  G        NTL+   ++     +A  +   M+  G+ P + TY  
Sbjct: 482 DSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNA 541

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---- 223
           +L      G    +  +   M      P+  +Y  L++ Y     VE    ++ E+    
Sbjct: 542 VLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGI 601

Query: 224 -------------------ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
                              +L   ++ F E++     P+  T N  +    +   V +  
Sbjct: 602 IEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTN 661

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           E+   ++ S     +  +NSL+    +   FE + ++  ++  K +  D++++N +I A 
Sbjct: 662 EILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAY 721

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + G++K+ + +   M++ G A DV T+NT + S+
Sbjct: 722 CRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASY 756



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 139/342 (40%), Gaps = 52/342 (15%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F    R  + P  D TFN+LI  +   G    A  + ++M   G  P+++T + ++  L 
Sbjct: 489 FKEMKRAGFVPERD-TFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALA 547

Query: 71  RTGNMNLTLKLHQEMVNGMGD-----------------------------FGGIYKPNVF 101
           R G    + K+  EM +G                                + GI +P   
Sbjct: 548 RGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAV 607

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELM 153
              +L+    K  L+ +T+  F+E++++G + +        ++  ++  + + N +L  +
Sbjct: 608 LLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFI 667

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
              G  P + TY  L+  Y        +  +   +  KG  PD+ S++ +I  YC+N  +
Sbjct: 668 KDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRM 727

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           +EA             +IF EMK   + P+  T N FI     +   +E +++   +  +
Sbjct: 728 KEA------------SRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKN 775

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
            C+     +NSLI   CK    + A+   + L  +NL   V 
Sbjct: 776 ECKPNQNTYNSLIDWFCKLNRRDEANSFISNL--RNLDPSVT 815



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 153/372 (41%), Gaps = 37/372 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N+L+  +      R+A +++K+M   G  P++ T ++LI+   R G ++  ++L 
Sbjct: 325 DKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELK 384

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
            +MV       GI KP+VF Y +L+ G  K    D    +F EM+  G   N        
Sbjct: 385 SQMVK-----KGI-KPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALI 438

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            +   +   VE  ++ E +      P I T+  LL  +   G  +    +F  M R GF+
Sbjct: 439 KMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV 498

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
           P+  +++ LI+ Y +    ++AM + R M+  G                        +K+
Sbjct: 499 PERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKV 558

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
             EMK     P   T    +        V  +  L   +     E    +  +L+    K
Sbjct: 559 LAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSK 618

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
             +       F +L  +    D+   N ++   G+   + K N +L  ++++G    + T
Sbjct: 619 SDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTT 678

Query: 352 FNTLMISFLQKE 363
           +N+LM  + + E
Sbjct: 679 YNSLMYMYSRTE 690



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 30/249 (12%)

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           ++L K+ +   A  LL  +   G++  I+ YT L+  Y   G+   A+ +F  +  +G  
Sbjct: 193 SVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCR 252

Query: 195 PDVFSYSVLINGY-------CKNFNVEEAMNVS-----------------REMILNGFKK 230
           P + +Y+V++N Y        K   + ++M  S                 R  +     +
Sbjct: 253 PTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAE 312

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F EMK     P+  T N  +D   K+    E ME+   +E S     +  +NSLI    
Sbjct: 313 VFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYA 372

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE---NGCAL 347
           + G+ + A EL +++  K +  DV  Y  L+    K G   K++Y +   EE    GC  
Sbjct: 373 RDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTG---KDDYAMKVFEEMRVAGCQP 429

Query: 348 DVDTFNTLM 356
           ++ TFN L+
Sbjct: 430 NICTFNALI 438



 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           + I  L K G       L   L      + +  + SLI      G +  A  +F KL  +
Sbjct: 190 VIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEE 249

Query: 309 NLVADVVAYNILIHALGKEG-QIKKENYLLLSMEENGCALDVDTFNTLMIS 358
                ++ YN++++  GK G    K   L+ SM+ +G A D+ T+NTL+ S
Sbjct: 250 GCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISS 300


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 172/368 (46%), Gaps = 42/368 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+K  C  G +  A +L+ +M+  GC P+  +  T+I+ + + G+++   +L 
Sbjct: 178 NVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELA 237

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +           ++P V  Y +LI G+CK+    +  DL  EM D+G++ N +      
Sbjct: 238 MK-----------FEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVI 286

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L     +  +  +   M  RG  P + T+T L+ G+ + G+V  A+ L++ M R+G  
Sbjct: 287 SCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVS 346

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------I 231
           P+V +Y+ LI+G C + N++EA++V  +M              I+ GF K          
Sbjct: 347 PNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACET 406

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           +N+M  C   P        +D LC+     +  +L   +    C   V  FN+ I+G C+
Sbjct: 407 WNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCR 466

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A  + +++     + ++  YN L+  L +    ++   L+  +EE     D  T
Sbjct: 467 AGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVT 526

Query: 352 FNTLMISF 359
           +NT+M  F
Sbjct: 527 YNTIMYGF 534



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 18/233 (7%)

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
           N L   M   GL P +FTY  LL   C  GKV+ A  L   M+ KG  PD  SY+ +I+ 
Sbjct: 164 NALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISS 223

Query: 207 YCKNFNVEEAMNVSREM---------ILNG------FKKIF---NEMKLCNVVPETFTCN 248
            CK  +V++A  ++ +          +++G      FK+ F   NEM    V P   + +
Sbjct: 224 MCKLGDVDKARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYS 283

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             I  L   G+V   + +F  + +  C   V+ F SLI+G    G    A  L+N +  +
Sbjct: 284 TVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIRE 343

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            +  +VVAYN LIH L  +G + +   +   ME++    +V T++T++  F +
Sbjct: 344 GVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAK 396



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 110/253 (43%), Gaps = 33/253 (13%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N V +  ++   C       A  L+  M + GC P V T +  I GL R G +   +
Sbjct: 416 RP-NVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAM 474

Query: 80  KLHQEMVNGMGDFGGIYK--PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----N 132
            +  +M          Y+  PN+  Y  L+DGL +     +   L  E++++ +      
Sbjct: 475 NVLDQMEK--------YECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVT 526

Query: 133 ANTLLCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM- 188
            NT++   +      ++L+L   M+  G+     T    +N YC +GKV  AI + D++ 
Sbjct: 527 YNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNIS 586

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
           A K F  D+ ++++++ G C     EEA+    EM+  G            + P   T N
Sbjct: 587 AEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRG------------IFPNIATWN 634

Query: 249 IFIDG-LCKNGHV 260
           + + G   K GH+
Sbjct: 635 VLVRGFFSKLGHM 647



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 104/261 (39%), Gaps = 52/261 (19%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V  A+  +   IR    P N V +N+LI G C +GN+ +A  +  +M     RPNVTT 
Sbjct: 329 RVGDAVGLWNLMIREGVSP-NVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTY 387

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            T+I G  ++G++    +   +M+N G        +PNV  Y  ++D LC+  + DQ  D
Sbjct: 388 STIIYGFAKSGDLVSACETWNKMINCGC-------RPNVVVYTCMVDVLCQMSMFDQAFD 440

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG-- 171
           L   M   G     +        LC+  ++  A  +L+ M +    P I TY  LL+G  
Sbjct: 441 LIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLF 500

Query: 172 ---------------------------------YCLVGKVNVAIALFDSMARKGFMPDVF 198
                                            +   G     + L   M   G   D  
Sbjct: 501 RANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTI 560

Query: 199 SYSVLINGYCKNFNVEEAMNV 219
           + +  +N YCK   V+ A+ V
Sbjct: 561 TVNTTVNAYCKLGKVKTAIKV 581


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 156/335 (46%), Gaps = 45/335 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+  FC EG IR A  +   +  +G RP+V + +TL+ G  + G++N
Sbjct: 129 ECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L     N M   G   +P+V+ Y  LI+GLCK+                       
Sbjct: 189 EGFRLK----NAMQASG--VQPDVYTYSVLINGLCKE----------------------- 219

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
               +K+ +AN L + M+  GL P   T+T L++G+C  G+V++A+ ++  M  +   PD
Sbjct: 220 ----SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CK  ++++A ++  EM + G K            P+  T    IDG CK
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK------------PDKITYTTLIDGSCK 323

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  
Sbjct: 324 EGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGT 383

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           Y ++I+   K+G +   + L+  M+ +G    V T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L    ++E +
Sbjct: 69  FSGLITAYLESGFLRDAIECXRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKT 141
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 142 KLVEAN---RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           KL + N   RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M   G +P+  
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E    +  +N+  D VAY 
Sbjct: 291 DLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G  L++ T+  ++  F +K
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKK 394



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 118/227 (51%), Gaps = 15/227 (6%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+ ++  A  + + + + GL P + ++  L+NGY  +G +N    L ++M   G  PDV
Sbjct: 147 CKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDV 206

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           ++YSVLING CK   +++A  +  EM+ NG            +VP   T    IDG CKN
Sbjct: 207 YTYSVLINGLCKESKMDDANELFDEMLDNG------------LVPNGVTFTTLIDGHCKN 254

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V   ME++  +   +    +  +N+LI G CK G  + A +L +++S K L  D + Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 318 NILIHALGKEGQIKKE-NYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             LI    KEG ++    Y  + ++EN   LD D   T +IS L +E
Sbjct: 315 TTLIDGSCKEGDLETAFEYRKIMIKEN-IRLD-DVAYTALISGLCQE 359


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 157/344 (45%), Gaps = 44/344 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +N+LI G+C  G++  A  + ++M   GC PNV T   LI+G  ++  ++  + L 
Sbjct: 211 NVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLF 270

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             MV    D G +  PNV  Y +LI G C D  +D    L   M++ G+  N        
Sbjct: 271 SRMV----DAGLV--PNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLI 324

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ EA  LL  ++Q+G+      YT L++G C  G+   A  L  ++  +GF+
Sbjct: 325 DALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFV 384

Query: 195 PDVFSYSVLINGYCKNFNVEEAM-----------------------NVSREMILNGFKKI 231
           PD  +YS LI+G C+   + EAM                        + RE+  +G KKI
Sbjct: 385 PDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKI 444

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME-LFPTLEISNCELFVEIFNSLIRGCC 290
            ++M    + P+ FT  IF+   C  G + +    +   ++   C   V  +N+LI G  
Sbjct: 445 LDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLV-TYNALICGYA 503

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
             G+   A   F  +       +  +Y +L+  L     IKKE+
Sbjct: 504 NLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLL-----IKKES 542



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 162/369 (43%), Gaps = 38/369 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ +LI  +C+ G++  + + +  +   G  P+     + + G  R G +    +L   M
Sbjct: 74  TYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLM 133

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                   G  +   F Y +L+ GLC   +V +   +F  M+  G   +          L
Sbjct: 134 -----PLRGCVR-TAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGL 187

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +  EA  LL   M  G  P +  Y  L++GYC VG + +A+ +F+ M   G  P+V
Sbjct: 188 CGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNV 247

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNE 234
            +Y+ LI+G+CK+  ++ AM +   M+  G                         ++   
Sbjct: 248 RTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQS 307

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+   +VP  +TC++ ID LCK+  V E   L  +L     ++   ++ SLI G CK G 
Sbjct: 308 MENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGR 367

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           F  A  L   L  +  V D   Y+ LI  L ++ ++ +   +L  M E G      T+ T
Sbjct: 368 FAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTY-T 426

Query: 355 LMISFLQKE 363
           ++I  L +E
Sbjct: 427 IIIDELVRE 435



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 167/382 (43%), Gaps = 51/382 (13%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R C R     T+ +L+ G C  G +R+A  +   M   GC P+     T++ GL   G 
Sbjct: 135 LRGCVR--TAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGR 192

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
              T +    + + M +    ++PNV  Y +LIDG C    ++   D+F  M   G + N
Sbjct: 193 ---TREAETLLSDAMAEG---FEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPN 246

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                      CK  KL  A  L   M+  GL P + TYT L+ G C  G+++ A  L  
Sbjct: 247 VRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQ 306

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM-------KLCN 239
           SM   G +P+ ++ SVLI+  CK+  V EA  +   +I  G K   NE+        LC 
Sbjct: 307 SMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIK--VNEIVYTSLIDGLCK 364

Query: 240 V------------------VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE----L 277
                              VP+  T +  IDGLC+   + E M +   +     +     
Sbjct: 365 AGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVT 424

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
           +  I + L+R     G    + ++ +K+    +  DV  Y I + +   EG+++   +++
Sbjct: 425 YTIIIDELVREVGADG----SKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMM 480

Query: 338 LSMEENGCALDVDTFNTLMISF 359
           L M ++G   ++ T+N L+  +
Sbjct: 481 LHMVDHGVCPNLVTYNALICGY 502



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 173/438 (39%), Gaps = 77/438 (17%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + K+  A+M F   +     P N VT+ +LI+G C +G +  A +L++ M   G  PN  
Sbjct: 260 SRKLDRAMMLFSRMVDAGLVP-NVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEW 318

Query: 61  TCDTLITGL---RRTGNMNLTLK------------LHQEMVNGM---GDFGGI------- 95
           TC  LI  L    R G   L L             ++  +++G+   G F          
Sbjct: 319 TCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTL 378

Query: 96  ----YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKL 143
               + P+   Y SLIDGLC+ + + +   +  +M +KG+  + +        L ++   
Sbjct: 379 VSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGA 438

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
             + ++L+ M+  G+ P +FTYT  +  YC  G++  A  +   M   G  P++ +Y+ L
Sbjct: 439 DGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNAL 498

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKK--------------------------------- 230
           I GY       +A +  + M+ NG K                                  
Sbjct: 499 ICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAE 558

Query: 231 ------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                 +  EM    +  E    N F+  LC+   + E   L   ++ +N     +++ S
Sbjct: 559 MKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTS 618

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +I  CC+  +   A    + +     +  + +Y  +I +L +EG I+    +   M    
Sbjct: 619 IIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKE 678

Query: 345 CALDVDTFNTLMISFLQK 362
              +   +  L+   LQK
Sbjct: 679 YNYEEIAWRILIDGLLQK 696



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 165/388 (42%), Gaps = 54/388 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V  A +  GS I++  + +N++ + SLI G C  G    A +L++ + + G  P+  T 
Sbjct: 332 RVGEAQLLLGSLIQKGIK-VNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTY 390

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            +LI GL R   ++  + +  +M+       G+ +P+   Y  +ID L ++   D +K +
Sbjct: 391 SSLIDGLCRQKELSEAMLVLDDMMEK-----GV-QPSPVTYTIIIDELVREVGADGSKKI 444

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             +M   GI  +           C + ++ +A  ++  M+  G+ P + TY  L+ GY  
Sbjct: 445 LDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYAN 504

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK--NFNVEEAMNVS------------ 220
           +G  + A + F  M   G  P+  SY+VL+    K  + N   A +VS            
Sbjct: 505 LGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHG 564

Query: 221 --REMI-----------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
              EM+                       L+  K +  EM+  N+ P        I   C
Sbjct: 565 LLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCC 624

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           +   + E +    ++  S     +E +  +I   C+ G  + A ++F  +  K    + +
Sbjct: 625 RLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEI 684

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEEN 343
           A+ ILI  L ++G + + + LL  MEE 
Sbjct: 685 AWRILIDGLLQKGYVAECSSLLSVMEEK 712



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 107/274 (39%), Gaps = 44/274 (16%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+   ++ +C EG + DA  ++  M   G  PN+ T + LI G    G  +      + M
Sbjct: 459 TYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHM 518

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT----------------KDLFMEMKD 128
           V NG        KPN   Y  L+  L K    +                    L  EM  
Sbjct: 519 VANGC-------KPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVK 571

Query: 129 KGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
             + +         T LC+  +L EA  LL  M    L P    YT ++   C +  +  
Sbjct: 572 LQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTE 631

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A+   DSM + G++P + SY  +I+  C+  +++ A            K++F +M     
Sbjct: 632 ALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTA------------KQVFGDMLSKEY 679

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
             E     I IDGL + G+V E   L   +E  N
Sbjct: 680 NYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKN 713



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 85/214 (39%), Gaps = 23/214 (10%)

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           LN + +    +  +A  +S A +    ++ +Y+ LIN YC   ++  +      ++  GF
Sbjct: 44  LNAFLMALARHRMLADMESFASRMPARNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGF 103

Query: 229 K-----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                                   ++F  M L   V   FT    + GLC  G V E M 
Sbjct: 104 APDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMS 163

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +F  ++   C     ++ +++ G C  G    A  L +    +    +VV YN LI    
Sbjct: 164 VFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYC 223

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             G ++    +   M+ NGC+ +V T+  L+  F
Sbjct: 224 NVGDLELAVDVFERMDVNGCSPNVRTYTELISGF 257


>gi|414875981|tpg|DAA53112.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
          Length = 574

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 175/373 (46%), Gaps = 44/373 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL---RRTGNMNLTLKLH 82
           TFN +I GFC  G +R A  + K ++ +G  P+V T +TLI G     + G M     L 
Sbjct: 190 TFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALL 249

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM+       GI  P+V  +  LI+G CK+  +     +F EM+ +GI AN +      
Sbjct: 250 KEMIQ-----AGI-SPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLV 303

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ K+ ++ +L+E M + GL  ++ T   +LNG+C  G +  A    D +A++G  
Sbjct: 304 SGLCREGKVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMK 363

Query: 195 PDVFSYSVLINGY------------------------CKNFN-VEEAMNVSREMILNGFK 229
           P+V +Y+ L++GY                         K +N +      SR+       
Sbjct: 364 PNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDW--RSVS 421

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            + +EMK   V  +  T N+ I  LC  G V + ++L   +     E     +N++I G 
Sbjct: 422 GLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGF 481

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C+ G  + A E+  ++  +   A+VV YN+ +    K G++ + N +L  M E G   + 
Sbjct: 482 CEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNR 541

Query: 350 DTFNTLMISFLQK 362
            T+  +    ++K
Sbjct: 542 ITYEIINSGMIEK 554



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 154/341 (45%), Gaps = 40/341 (11%)

Query: 56  RPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL 115
           RP+  + + L+  L R   ++L  +  +  +           P++F +  +I G CK   
Sbjct: 150 RPSAFSVNALLAALVRADRVDLADRAFRAALRRR------VSPDLFTFNIVISGFCKTGQ 203

Query: 116 VDQTKDLFMEMKDKGINA-----NTLL---CKKT---KLVEANRLLELMMQRGLNPVIFT 164
           + +  D+   +   G+       NTL+   CK+    K+   + LL+ M+Q G++P + T
Sbjct: 204 LRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVT 263

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM- 223
           +  L+NGYC    +  AI +F  M ++G   +V +Y+ L++G C+   VE+++ +  EM 
Sbjct: 264 FNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEME 323

Query: 224 -------------ILNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
                        +LNGF K           + +    + P   T N  +DG  + G + 
Sbjct: 324 ELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKMK 383

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           E       +        V+ +N LI G      +   S L +++  K + ADVV YN+LI
Sbjct: 384 EAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLI 443

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            AL  +G+++K   LL  M E G       +NT++  F +K
Sbjct: 444 GALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEK 484



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 143/317 (45%), Gaps = 32/317 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN LI G+C E NI  A ++ ++M   G   NV T ++L++GL R G +  ++KL +E
Sbjct: 262 VTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEE 321

Query: 85  MVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143
           M   G+          +    S+++G CK  ++ + +     +  +G+  N +      L
Sbjct: 322 MEELGLACI-------LSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVI--TYNTL 372

Query: 144 VEANRLL----------ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           V+  R L          + M  +G++P + TY  L+ G+           L D M  KG 
Sbjct: 373 VDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGV 432

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
             DV +Y+VLI   C    V +A+            K+ +EM    + P+    N  I+G
Sbjct: 433 KADVVTYNVLIGALCCKGEVRKAV------------KLLDEMVEVGLEPKHVAYNTIING 480

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C+ G      E+   +E       V  +N  ++  CK G  + A+ + N++  K LV +
Sbjct: 481 FCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPN 540

Query: 314 VVAYNILIHALGKEGQI 330
            + Y I+   + ++G +
Sbjct: 541 RITYEIINSGMIEKGYV 557



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 120/274 (43%), Gaps = 37/274 (13%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+NSL+ G C EG + D+ +LV++M   G    ++T ++++ G  + G M     
Sbjct: 293 PANVVTYNSLVSGLCREGKVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEA-- 350

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------ 134
             +  V+G+   G   KPNV  Y +L+DG  +   + +       M  KGI+ N      
Sbjct: 351 --EGWVDGIAQRG--MKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNC 406

Query: 135 --TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             T           + LL+ M ++G+   + TY  L+   C  G+V  A+ L D M   G
Sbjct: 407 LITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVG 466

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREM----------ILNGFKKIF---------- 232
             P   +Y+ +ING+C+  + + A  +   M            N F K F          
Sbjct: 467 LEPKHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEAN 526

Query: 233 ---NEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
              NEM    +VP   T  I   G+ + G+V ++
Sbjct: 527 VVLNEMLEKGLVPNRITYEIINSGMIEKGYVPDI 560



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 53/245 (21%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T NS++ GFC +G + +A   V  +A  G +PNV T +TL+ G RR     L        
Sbjct: 333 TMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRR-----LGKMKEAAA 387

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                   GI  PNV  Y  LI G    R       L  EMK+KG+ A+ +        L
Sbjct: 388 AKDAMAGKGI-SPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIGAL 446

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC------------------------ 173
           C K ++ +A +LL+ M++ GL P    Y  ++NG+C                        
Sbjct: 447 CCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANV 506

Query: 174 -----------LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE----AMN 218
                       +GK++ A  + + M  KG +P+  +Y ++ +G  +   V +    A +
Sbjct: 507 VTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGMIEKGYVPDISGYAAD 566

Query: 219 VSREM 223
           VS+ +
Sbjct: 567 VSKNL 571


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 171/356 (48%), Gaps = 30/356 (8%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           Y P  D  F S +   C   N+ DAS  L+ K + FGCR      + L++ L   G ++ 
Sbjct: 7   YSP--DARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHD 64

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
            + L +  +        +Y P+V+ +  +I G+C+   V +  +L   M + G + +T+ 
Sbjct: 65  VVALFERWIQDR-----VYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVT 119

Query: 137 -------LCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                  LC+  ++   + +L  + + G+  P + T+T +++GYC  GK+  A+A+++ M
Sbjct: 120 HNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 179

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
              G MP+  +Y+VLINGY K  ++  A+            +++ +M      P+  T +
Sbjct: 180 VASGIMPNTVTYNVLINGYGKVGDLGSAV------------EVYQQMTRLRCPPDVVTFS 227

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             IDG C+ G + + + ++  +     +  V  F+ +I   CK    + A  L N+L+ +
Sbjct: 228 SLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLR 287

Query: 309 -NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            ++      YN +I  L K G++ + N +   MEE GC  D  T+  L+I +  K 
Sbjct: 288 PDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKS 343



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 163/346 (47%), Gaps = 30/346 (8%)

Query: 3   KVLGALMAFGSFIR-RCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           +V   +  F  +I+ R Y P  DV +FN +IKG C  G ++ A +LV++M  FGC P+  
Sbjct: 61  RVHDVVALFERWIQDRVYSP--DVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTV 118

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T + L+ GL RT   N   + H+ +     D  G+  PNV  + S+I G CK   ++   
Sbjct: 119 THNILVDGLCRT---NEVSRGHEVLRRLQRD--GVCMPNVVTFTSVISGYCKAGKLEDAM 173

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            ++ +M   GI  NT+          K   L  A  + + M +    P + T++ L++GY
Sbjct: 174 AVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 233

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  G+++ A+ ++  MA+    P+V+++S++I+  CK    +EA+             + 
Sbjct: 234 CRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIG------------LL 281

Query: 233 NEMKL-CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           NE+ L  ++ P+ F  N  ID LCK G V E   +   +E   C      +  LI G C 
Sbjct: 282 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCM 341

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
                 A   F+++       D +  N  I  L K G   + ++++
Sbjct: 342 KSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVM 387


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 170/356 (47%), Gaps = 30/356 (8%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           Y P  D  F S +   C   N+ DAS  L+ K + FGCR      + L++ L   G ++ 
Sbjct: 174 YSP--DARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHD 231

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
            + L +  +        +Y P+V+ +  +I G+C+   V +  +L   M + G + +T+ 
Sbjct: 232 VVALFERWIQDR-----LYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVT 286

Query: 137 -------LCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                  LC+  ++   + +L  + + G+  P + T+T +++GYC  GK+  A+A+++ M
Sbjct: 287 HNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 346

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
              G MP+  +Y+VLINGY K  ++  A+ V            + +M      P+  T +
Sbjct: 347 VASGIMPNTVTYNVLINGYGKVGDLGSAVEV------------YQQMTRLRCPPDVVTFS 394

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             IDG C+ G + + + ++  +     +  V  F+ +I   CK    + A  L N+L+ +
Sbjct: 395 SLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLR 454

Query: 309 -NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            ++      YN +I  L K G++ + N +   MEE GC  D  T+  L+I +  K 
Sbjct: 455 PDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKS 510



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 165/346 (47%), Gaps = 30/346 (8%)

Query: 3   KVLGALMAFGSFIR-RCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           +V   +  F  +I+ R Y P  DV +FN +IKG C  G ++ A +LV++M  FGC P+  
Sbjct: 228 RVHDVVALFERWIQDRLYSP--DVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTV 285

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T + ++ GL RT  ++   + H+ +     D  G+  PNV  + S+I G CK   ++   
Sbjct: 286 THNIIVDGLCRTNEVS---RGHEVLRRLQRD--GVCMPNVVTFTSVISGYCKAGKLEDAM 340

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            ++ +M   GI  NT+          K   L  A  + + M +    P + T++ L++GY
Sbjct: 341 AVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 400

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  G+++ A+ ++  MA+    P+V+++S++I+  CK    +EA+            ++ 
Sbjct: 401 CRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAI------------RLL 448

Query: 233 NEMKL-CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           NE+ L  ++ P+ F  N  ID LCK G V E   +   +E   C      +  LI G C 
Sbjct: 449 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCM 508

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
                 A   F+++       D +  N  I  L K G   + ++++
Sbjct: 509 KSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVM 554



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 131/315 (41%), Gaps = 25/315 (7%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           P+  +C  +I  L R+G     L+L  +M    G     Y P+      L+       L+
Sbjct: 140 PSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYG-----YSPDARFLSFLVSSCTCANLL 194

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQ-RGLNPVIFTYTP 167
           D +  L  +  + G              L  + ++ +   L E  +Q R  +P ++++  
Sbjct: 195 DASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNV 254

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           ++ G C VG+V  A+ L + M   G  PD  +++++++G C+   V     V R +  +G
Sbjct: 255 VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDG 314

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                        +P   T    I G CK G + + M ++  +  S        +N LI 
Sbjct: 315 V-----------CMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLIN 363

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G  K G    A E++ +++      DVV ++ LI    + GQ+     +   M ++    
Sbjct: 364 GYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQP 423

Query: 348 DVDTFNTLMISFLQK 362
           +V TF+ ++ S  ++
Sbjct: 424 NVYTFSIIIHSLCKQ 438


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 168/372 (45%), Gaps = 37/372 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   +   I   C +  + +A ++ + M   G  PN+ T   +I G  +TGN+     L+
Sbjct: 233 NVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLY 292

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
           +E++           PNV  +G+L+DG CK R +   + LF+ M   G++ N  +     
Sbjct: 293 KEILVAE------LLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLI 346

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   ++EA  LL  M    L+P +FTYT L+NG C+  +V  A  LF  M  +   
Sbjct: 347 HGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIF 406

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------I 231
           P   +Y+ LI+GYCK +N+E+A+++  EM  +G +                        +
Sbjct: 407 PSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGL 466

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           + EM +  +VP+  T    ID   K  ++ E + L+  +  +        F  L+ G  K
Sbjct: 467 YFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWK 526

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G   +A + + + + +    + V +  LI  L + G I + +     M   G   D+ +
Sbjct: 527 EGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICS 586

Query: 352 FNTLMISFLQKE 363
           + +++   LQ++
Sbjct: 587 YVSMLKGHLQEK 598



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 168/408 (41%), Gaps = 87/408 (21%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  F   G   +A  + ++M    C P+   C +++ GL R    +     +Q M+
Sbjct: 135 FSLLIMEFLEMGLFEEALWVSREMK---CSPDSKACLSILNGLVRRRRFDSVWVDYQLMI 191

Query: 87  N-GMGDFGGIY----------------------------KPNVFCYGSLIDGLCKDRLVD 117
           + G+     IY                            KPNV+ Y   I  LC+D  ++
Sbjct: 192 SRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKME 251

Query: 118 QTKDLFMEMKDKGINAN----------------------------------------TLL 137
           + + +F  MK  G+  N                                        TL+
Sbjct: 252 EAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLV 311

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  +LV A  L   M++ G++P ++ Y  L++G+C  G +  A+ L   M      
Sbjct: 312 DGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLS 371

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDVF+Y++LING C    V EA             ++F +MK   + P + T N  I G 
Sbjct: 372 PDVFTYTILINGLCIEDQVAEA------------NRLFQKMKNERIFPSSATYNSLIHGY 419

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK  ++ + ++L   +  S  E  +  F++LI G C     + A  L+ +++ K +V DV
Sbjct: 420 CKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDV 479

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V Y  LI A  KE  +K+   L   M E G   +  TF  L+  F ++
Sbjct: 480 VTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKE 527



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 49/245 (20%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  LI G C+E  + +A++L +KM      P+  T ++LI G  +  NM   L L  EM
Sbjct: 376 TYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEM 435

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC------- 138
                   G+ +PN+  + +LIDG C  R +     L+ EM  KGI  + +         
Sbjct: 436 TAS-----GV-EPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAH 489

Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI--------------- 182
            K+  + EA RL   M++ G++P   T+  L++G+   G+++VAI               
Sbjct: 490 FKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNH 549

Query: 183 --------------------ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
                                 F  M   G  PD+ SY  ++ G+ +   + + M +  +
Sbjct: 550 VGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCD 609

Query: 223 MILNG 227
           MI  G
Sbjct: 610 MIKTG 614


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 165/347 (47%), Gaps = 39/347 (11%)

Query: 48  KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSL 106
           + M + GC P++ T +TLI GL + G +    +L  EM + G        +PNV  Y  L
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGC-------EPNVITYTIL 55

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGL 158
           ID  CK+  +++ +++  EM  KG+  N +        LCK  K+ +A  +   M  +G 
Sbjct: 56  IDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGC 115

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P IFT+  L+ G C V K   A+ L+  M  +G + +  +Y+ LI+ + +   ++EA+ 
Sbjct: 116 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALK 175

Query: 219 VSREMIL----------NGFKK-------------IFNEMKLCNVVPETFTCNIFIDGLC 255
           +  +M+           NG  K             +F +M    + P   +CNI I+GLC
Sbjct: 176 LVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLC 235

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           + G++   +E    +        +  +NSLI G CK G  + A  LF+KL  + +  D +
Sbjct: 236 RTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAI 295

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            YN LI    KEG     + LL    ++G   +  T+  L+ +F+++
Sbjct: 296 TYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKE 342



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 151/316 (47%), Gaps = 28/316 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T+  LI  FC EG + +A  ++ +M+  G   N    + LI+ L +   +       
Sbjct: 48  NVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKV------- 100

Query: 83  QEMVNGMGDFGGIY-KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           Q+ +N  GD      KP++F + SLI GLCK    ++   L+ +M  +G+ ANT+     
Sbjct: 101 QDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTL 160

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                ++  + EA +L+  M+ RG      TY  L+   C  G +   +ALF+ M  KG 
Sbjct: 161 IHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGL 220

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+  S ++LING C+  N++ A+   R+MI  G            + P+  T N  I+G
Sbjct: 221 NPNNISCNILINGLCRTGNIQHALEFLRDMIHRG------------LTPDIVTYNSLING 268

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK G   E + LF  L++         +N+LI   CK G+F+ A  L ++      + +
Sbjct: 269 LCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPN 328

Query: 314 VVAYNILIHALGKEGQ 329
            V + IL+    KEG 
Sbjct: 329 EVTWYILVSNFIKEGD 344



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 118/265 (44%), Gaps = 27/265 (10%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
            KV  AL  FG    +  +P +  TFNSLI G C      +A  L + M   G   N  T
Sbjct: 98  EKVQDALNMFGDMSSKGCKP-DIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTIT 156

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI    R G M   LKL  +M+     F G    ++  Y  LI  LC+   +++   
Sbjct: 157 YNTLIHAFLRRGAMQEALKLVNDML-----FRGCPLDDI-TYNGLIKALCRAGNIEKGLA 210

Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           LF +M  KG+N N +        LC+   +  A   L  M+ RGL P I TY  L+NG C
Sbjct: 211 LFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLC 270

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G+   A+ LFD +  +G  PD  +Y+ LI+ +CK    ++A  +    + +GF     
Sbjct: 271 KTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF----- 325

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNG 258
                  +P   T  I +    K G
Sbjct: 326 -------IPNEVTWYILVSNFIKEG 343



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 116/245 (47%), Gaps = 26/245 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V +N LI   C +  ++DA  +   M++ GC+P++ T ++LI GL +       L L
Sbjct: 82  LNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGL 141

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           +Q+M+       G+   N   Y +LI    +   + +   L  +M  +G     I  N L
Sbjct: 142 YQDML-----LEGVI-ANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGL 195

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC+   + +   L E MM +GLNP   +   L+NG C  G +  A+     M  +G 
Sbjct: 196 IKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL 255

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ +Y+ LING CK    +EA+N            +F+++++  + P+  T N  I  
Sbjct: 256 TPDIVTYNSLINGLCKTGRAQEALN------------LFDKLQVEGICPDAITYNTLISW 303

Query: 254 LCKNG 258
            CK G
Sbjct: 304 HCKEG 308



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 35/195 (17%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL+D+T+N LIK  C  GNI     L + M + G  PN  +C+ LI GL RTGN+   L+
Sbjct: 186 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 245

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139
             ++M++ G+        P++  Y SLI+GLCK                           
Sbjct: 246 FLRDMIHRGL-------TPDIVTYNSLINGLCK--------------------------- 271

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             +  EA  L + +   G+ P   TY  L++ +C  G  + A  L       GF+P+  +
Sbjct: 272 TGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVT 331

Query: 200 YSVLINGYCKNFNVE 214
           + +L++ + K  + E
Sbjct: 332 WYILVSNFIKEGDQE 346



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 12/179 (6%)

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           + +SM   G  PD+F+Y+ LI G CK   +  A            +++ NEM++    P 
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSA------------RELMNEMQIKGCEPN 48

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T  I ID  CK G + E   +   +      L    +N LI   CK    + A  +F 
Sbjct: 49  VITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFG 108

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +S K    D+  +N LI  L K  + ++   L   M   G   +  T+NTL+ +FL++
Sbjct: 109 DMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRR 167



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N+LI G CK G    A EL N++  K    +V+ Y ILI    KEG++++   +L  M 
Sbjct: 17  YNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMS 76

Query: 342 ENGCALDVDTFNTLMISFLQKE 363
             G AL+   +N L+ +  + E
Sbjct: 77  GKGLALNAVGYNCLISALCKDE 98


>gi|414882131|tpg|DAA59262.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1604

 Score =  135 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 109/328 (33%), Positives = 156/328 (47%), Gaps = 33/328 (10%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMAT--FGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            VT+N+L+  F  EG     + L+K+M T   GC PN  T + +ITGL R G+    L+  
Sbjct: 1120 VTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGD----LEEA 1175

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------NANT 135
             E+V GM       K + F Y  LI GL     V +  DL +EM+++GI       NA  
Sbjct: 1176 AELVEGMRLSK---KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMI 1232

Query: 136  LLCKKTKLVEANRL-LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
                ++ LVEA ++    M   GL P + TY  LLNGYC  G +  A+ LF  + R G  
Sbjct: 1233 HGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLA 1292

Query: 195  PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            P V +Y++LI+GYC+  ++EEA  +  EM   G             +P   T  I + G 
Sbjct: 1293 PTVLTYNILIDGYCRLGDLEEARILKEEMGEQG------------CLPNVCTYTILMKGS 1340

Query: 255  CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS--ELFNKLSCKNLVA 312
                 +    E F   E+ +  L  + F    R C +  + +IA   EL   L  + + +
Sbjct: 1341 LNVRSLAMAREFFD--EMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISS 1398

Query: 313  DVVAYNILIHALGKEGQIKKENYLLLSM 340
            D V YNILIH L K G +K    L + M
Sbjct: 1399 DTVTYNILIHGLCKTGNLKDAKELQMKM 1426



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 113/258 (43%), Gaps = 26/258 (10%)

Query: 17   RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            R  +  +  T+N LI G    G ++    L  +M   G  P V T + +I GL ++G + 
Sbjct: 1183 RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVE 1242

Query: 77   LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
                   EM   MG       P+V  Y SL++G CK   + +   LF +++  G+    L
Sbjct: 1243 AAQVKFAEM-RAMGLL-----PDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVL 1296

Query: 137  --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                     C+   L EA  L E M ++G  P + TYT L+ G   V  + +A   FD M
Sbjct: 1297 TYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEM 1356

Query: 189  ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
              KG  PD F+Y+  I       ++  A  +   ++L G            +  +T T N
Sbjct: 1357 LSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEG------------ISSDTVTYN 1404

Query: 249  IFIDGLCKNGHVLEVMEL 266
            I I GLCK G++ +  EL
Sbjct: 1405 ILIHGLCKTGNLKDAKEL 1422



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 22/212 (10%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            VT+N++I G    G +  A     +M   G  P+V T ++L+ G  + GN+   L L   
Sbjct: 1226 VTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLL--- 1282

Query: 85   MVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TL 136
                   FG + +    P V  Y  LIDG C+   +++ + L  EM ++G   N    T+
Sbjct: 1283 -------FGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTI 1335

Query: 137  LCKKT----KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
            L K +     L  A    + M+ +GL P  F Y   +    ++G +  A  L + +  +G
Sbjct: 1336 LMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEG 1395

Query: 193  FMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
               D  +Y++LI+G CK  N+++A  +  +M+
Sbjct: 1396 ISSDTVTYNILIHGLCKTGNLKDAKELQMKMV 1427



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 119/266 (44%), Gaps = 32/266 (12%)

Query: 123  FMEMKDKGINANTLLCKKTKLV--EANR------LLELMMQRGLNPVIFTYTPLLNGYCL 174
            F EM   G+  +   C +   V  +A R      + E M++ G+ P I TY  LL+ +  
Sbjct: 1072 FREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLK 1131

Query: 175  VGKVNVAIALFDSMARKGF--MPDVFSYSVLINGYCKNFNVEEA------MNVSREM--- 223
             G+ +    L   M  +G   +P+  +Y+V+I G  +  ++EEA      M +S++    
Sbjct: 1132 EGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSF 1191

Query: 224  ----ILNGF------KKIFN---EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                ++ G       KK+++   EM+   ++P   T N  I GL ++G V      F  +
Sbjct: 1192 TYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEM 1251

Query: 271  EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                    V  +NSL+ G CK G  + A  LF  L    L   V+ YNILI    + G +
Sbjct: 1252 RAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDL 1311

Query: 331  KKENYLLLSMEENGCALDVDTFNTLM 356
            ++   L   M E GC  +V T+  LM
Sbjct: 1312 EEARILKEEMGEQGCLPNVCTYTILM 1337



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 14/174 (8%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            +T+NSL+ G+C  GN+++A  L   +   G  P V T + LI G  R G++     L +E
Sbjct: 1261 ITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEE 1320

Query: 85   MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCK 139
            M    G+ G +  PNV  Y  L+ G    R +   ++ F EM  KG+       NT +C 
Sbjct: 1321 M----GEQGCL--PNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICA 1374

Query: 140  KTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
            +  L +  R  EL   +M  G++    TY  L++G C  G +  A  L   M R
Sbjct: 1375 ELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVR 1428



 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 75/187 (40%), Gaps = 21/187 (11%)

Query: 180  VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI-LNGFKKIFNEMKLC 238
            + ++ F  MA  G  PDV           K+ N    + V R+    +    +  EM   
Sbjct: 1067 LCLSAFREMASHGVAPDV-----------KDCN--RVLRVLRDAARWDDICAVHEEMLEL 1113

Query: 239  NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI--SNCELFVEIFNSLIRGCCKFGIFE 296
             + P   T N  +D   K G   +V  L   +E   S C      +N +I G  + G  E
Sbjct: 1114 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLE 1173

Query: 297  IASELFN--KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
             A+EL    +LS K   A    YN LI  L   G +KK   L L ME  G    V T+N 
Sbjct: 1174 EAAELVEGMRLSKK---ASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNA 1230

Query: 355  LMISFLQ 361
            ++   LQ
Sbjct: 1231 MIHGLLQ 1237


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 147/307 (47%), Gaps = 28/307 (9%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           + ++I  +C  GN+R AS++  +    G  PN  T   LI G  + G M     L  +M 
Sbjct: 240 YTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQ 299

Query: 87  -NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL---L 137
             G+G        N   + ++IDG C+  +VD    +   M+  GI       NTL   L
Sbjct: 300 GRGVGH-------NQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGL 352

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+  ++ EA  LL +M+++G+ P   TYT L++ +C  G +  A  LF  MA KG MP V
Sbjct: 353 CRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSV 412

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+V+++GY K  ++ EA    +EM   G             VP+ +T    + G C N
Sbjct: 413 VTYNVMMDGYIKKGSIREAERFRKEMEKKGL------------VPDVYTYASLVHGHCVN 460

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V   ++LF  ++    E  V  + +LI G  K G  E A +L++ +    L  D   Y
Sbjct: 461 GKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLY 520

Query: 318 NILIHAL 324
           + L+ +L
Sbjct: 521 SALVGSL 527



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 152/343 (44%), Gaps = 28/343 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  L+      G+I     +V +M       +V     +I    R GN+    ++  E 
Sbjct: 204 TYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDEC 263

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           V NG+       +PN   YG LI+G CK   ++  + L  +M+ +G+  N ++       
Sbjct: 264 VGNGI-------EPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDG 316

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C++  +  A ++   M + G+   ++TY  L  G C V ++  A  L   M  KG  P+
Sbjct: 317 YCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPN 376

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+ +CK  ++ EA            +++F EM     +P   T N+ +DG  K
Sbjct: 377 YVTYTTLISIHCKEGDMVEA------------RRLFREMAGKGAMPSVVTYNVMMDGYIK 424

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E       +E       V  + SL+ G C  G  ++A +LF ++  +    +VVA
Sbjct: 425 KGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVA 484

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y  LI  L KEG+ ++   L   M + G   D   ++ L+ S 
Sbjct: 485 YTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSL 527



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 118/253 (46%), Gaps = 26/253 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ T+  LI GFC  G +  A  L+  M   G   N    +T+I G  R G ++  LK+ 
Sbjct: 271 NERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVK 330

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
             M   MG      + +V+ Y +L  GLC+   + + K L   M +KG+  N        
Sbjct: 331 AAM-EKMG-----IELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLI 384

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           ++ CK+  +VEA RL   M  +G  P + TY  +++GY   G +  A      M +KG +
Sbjct: 385 SIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLV 444

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV++Y+ L++G+C N  V+ A+            K+F EMK     P        I GL
Sbjct: 445 PDVYTYASLVHGHCVNGKVDVAL------------KLFEEMKHRGTEPNVVAYTALISGL 492

Query: 255 CKNGHVLEVMELF 267
            K G   E  +L+
Sbjct: 493 AKEGRSEEAFQLY 505



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 14/214 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + FN++I G+C +G + +A ++   M   G   +V T +TL  GL R   M     L 
Sbjct: 306 NQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLL 365

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
             M+       G+  PN   Y +LI   CK+  + + + LF EM  KG     +  N ++
Sbjct: 366 HIMIEK-----GV-PPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMM 419

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               KK  + EA R  + M ++GL P ++TY  L++G+C+ GKV+VA+ LF+ M  +G  
Sbjct: 420 DGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTE 479

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           P+V +Y+ LI+G  K    EEA  +  +M+  G 
Sbjct: 480 PNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGL 513



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 120/288 (41%), Gaps = 31/288 (10%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRG 157
           ++DG CK   VD  + L  EM   G+  N L          ++        LLE+M   G
Sbjct: 138 VVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMENGG 197

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           +   + TYT L++     G ++   A+ D M  K    DV+ Y+ +IN YC+  NV  A 
Sbjct: 198 IEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRAS 257

Query: 218 NVSRE--------------MILNGFKKI---------FNEMKLCNVVPETFTCNIFIDGL 254
            V  E              +++NGF KI           +M+   V       N  IDG 
Sbjct: 258 EVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGY 317

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G V   +++   +E    EL V  +N+L  G C+      A  L + +  K +  + 
Sbjct: 318 CRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNY 377

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V Y  LI    KEG + +   L   M   G    V T+N +M  +++K
Sbjct: 378 VTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKK 425



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 33/184 (17%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+ +LI   C EG++ +A +L ++MA  G  P+V T + ++ G  + G++    +
Sbjct: 374 PPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAER 433

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
             +EM     +  G+  P+V+ Y SL+ G C +  VD    LF EMK             
Sbjct: 434 FRKEM-----EKKGLV-PDVYTYASLVHGHCVNGKVDVALKLFEEMK------------- 474

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                          RG  P +  YT L++G    G+   A  L+D M + G  PD   Y
Sbjct: 475 --------------HRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLY 520

Query: 201 SVLI 204
           S L+
Sbjct: 521 SALV 524


>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
          Length = 461

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 165/359 (45%), Gaps = 26/359 (7%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVK-KMATFGCRPNVTTCDTLITG 68
           A G+ I++ +R +  +TF  L+KG C +    DA  +V  +M   GC PNV +C  L+ G
Sbjct: 106 ALGNVIKKGFR-VEAITFTPLLKGLCADKRTSDAMDIVLCRMTQLGCIPNVFSCTILLKG 164

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L Q M     D GG   P+V  Y ++I+G  K+   D+    + EM D
Sbjct: 165 LCDENRSQEALELLQMM----PDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFD 220

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  + +        LCK   + +A  +L  M++ G+ P   TY  +++GYC  G++  
Sbjct: 221 QGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTE 280

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           AI     M   G  PDV + ++L++  CKN    EA            +KIFN M  C +
Sbjct: 281 AIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEA------------RKIFNSMTKCGL 328

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T    + G    G ++E+ +L   +  +  +    +FN LI    K    + A  
Sbjct: 329 KPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAML 388

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +F+K+  + L  + V Y  +I  L K G++      L  M   G   D+  +  L+  F
Sbjct: 389 VFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGF 447



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 149/370 (40%), Gaps = 50/370 (13%)

Query: 12  GSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGC---RPNVTTCDTLITG 68
           G+ I    R L+DV  +S             A     +MA  G     PN+ T   LI  
Sbjct: 44  GATIYGLNRALDDVARHSPAA----------AVSRYNRMARAGADEVTPNLYTYSVLIGC 93

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
             R G ++L          G    G +    ++     +  L+ GLC D+      D+ +
Sbjct: 94  CCRAGRLDL----------GFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVL 143

Query: 125 -EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLN--PVIFTYTPLLNGYC 173
             M   G   N          LC + +  EA  LL++M   G +  P +  Y  ++NG+ 
Sbjct: 144 CRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFF 203

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G  + A A +  M  +G +PDV +YS +I   CK   +++AM V   M+ NG      
Sbjct: 204 KEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG------ 257

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                 V+P   T N  + G C +G + E +     +     E  V   N L+   CK  
Sbjct: 258 ------VMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNR 311

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A ++FN ++   L  D+  Y  L+     +G + + + LL  M  NG   +   FN
Sbjct: 312 RCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFN 371

Query: 354 TLMISFLQKE 363
            L+ ++ ++E
Sbjct: 372 ILICAYAKQE 381



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 14/199 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NS++ G+C  G + +A   +K M + G  P+V TC+ L+  L +    N      +++
Sbjct: 264 TYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCK----NRRCTEARKI 319

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLLC-- 138
            N M   G   KP++  Y +L+ G      + +  DL   M   GI  N      L+C  
Sbjct: 320 FNSMTKCG--LKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAY 377

Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K+ K+ EA  +   M Q+GL+P    Y  +++  C +G+V  A+     M  +G  PD+
Sbjct: 378 AKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDI 437

Query: 198 FSYSVLINGYCKNFNVEEA 216
             Y+ LI+G+C     E+A
Sbjct: 438 IVYTPLIHGFCTCDKWEKA 456


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 170/406 (41%), Gaps = 76/406 (18%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V  N+++ GFC EG + +A +LV++M   G  PNV T +  I+ L + G +    ++
Sbjct: 205 MNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRI 264

Query: 82  HQEM-------------------VNGMGDFG--------------GIYKPNVFCYGSLID 108
            Q+M                   ++G  D G              G +   V  Y   + 
Sbjct: 265 FQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLS 324

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNP 160
           GL ++  V + ++L  EM  +GI  N+         LCK+ K  +A R+   +    ++P
Sbjct: 325 GLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSP 384

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            + TYT LL+ YC  G +  A  + D MA+KG  P+ F+Y+VL+    +     EA  + 
Sbjct: 385 DVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLL 444

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
             M   G+              +T  CNI IDGLC+N  +   M++   +          
Sbjct: 445 ERMNEKGYSL------------DTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGR 492

Query: 281 IFNS-----------------------LIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           + NS                       LI   CK G F+ A +   ++  K++  D V Y
Sbjct: 493 LGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIY 552

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +  IH   K G+      +L  ME+ GC     T+N L+  F +K 
Sbjct: 553 DTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKH 598



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 158/369 (42%), Gaps = 45/369 (12%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P     +N LI     E  +     L K +   G +P+V T + L+  L   G M L  +
Sbjct: 107 PPTTPVYNRLILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLLLQALCDAGRMELAQR 166

Query: 81  LHQEM---------------------VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           +   M                     ++ +    G+   N+    +++ G CK+ LV++ 
Sbjct: 167 VFDAMPARNEFSFGILARGYCRAGRSIDALKVLDGMPSMNLVVCNTVVAGFCKEGLVEEA 226

Query: 120 KDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELM---MQRGL-NPVIFTYTP 167
           + L   M+ +G+  N        + LCK  ++++A R+ + M    Q GL  P   T+  
Sbjct: 227 ERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDV 286

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +L+G+C  G V+ A  L D M   GF+  V SY+  ++G  +N  V EA  + REM   G
Sbjct: 287 MLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEG 346

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
            +            P ++T NI + GLCK G   +   +   +        V  + SL+ 
Sbjct: 347 IQ------------PNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLH 394

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
             C  G    A+ + ++++ K    +   YN+L+ +L + G+  +   LL  M E G +L
Sbjct: 395 AYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSL 454

Query: 348 DVDTFNTLM 356
           D    N ++
Sbjct: 455 DTAGCNIII 463



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 22/310 (7%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           FIR      + VT+ SL+  +C +GNI  A++++ +MA  GC PN  T + L+  L R G
Sbjct: 376 FIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAG 435

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
                 +L + M N  G     Y  +      +IDGLC++  +D   D+   M ++G  A
Sbjct: 436 RTTEAERLLERM-NEKG-----YSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGA 489

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L      V ++  +    QR L P   TY+ L++  C  G+ + A      M  K  
Sbjct: 490 LGRLGNSFLSVVSDSSIS---QRCL-PDQITYSILISALCKEGRFDEAKKKLLEMIVKDI 545

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD   Y   I+GYCK+     A+ V R+M          E K CN  P T T N+ I G
Sbjct: 546 SPDSVIYDTFIHGYCKHGKTSLAIKVLRDM----------EKKGCN--PSTRTYNLLIRG 593

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             +     E+M+L   ++       V  +NSLI+  C+ G+   A  L +++    LV +
Sbjct: 594 FEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNELVPN 653

Query: 314 VVAYNILIHA 323
           + ++++LI A
Sbjct: 654 ITSFDLLIKA 663



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 30/247 (12%)

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
           +  LVEA  L + ++  G  P +FT   LL   C  G++ +A  +FD+M  +    + FS
Sbjct: 125 RLDLVEA--LYKDLLLSGAQPDVFTRNLLLQALCDAGRMELAQRVFDAMPAR----NEFS 178

Query: 200 YSVLINGYCKNFNVEEAMNVSREM----------ILNGF---------KKIFNEMKLCNV 240
           + +L  GYC+     +A+ V   M          ++ GF         +++   M++  +
Sbjct: 179 FGILARGYCRAGRSIDALKVLDGMPSMNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGL 238

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE----IFNSLIRGCCKFGIFE 296
            P   T N  I  LCK G VL+   +F  ++              F+ ++ G C  G  +
Sbjct: 239 APNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVD 298

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A  L + + C   +  V +YN  +  L + G++ +   LL  M   G   +  T+N ++
Sbjct: 299 EARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYN-II 357

Query: 357 ISFLQKE 363
           +S L KE
Sbjct: 358 VSGLCKE 364


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 172/392 (43%), Gaps = 60/392 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+++  +C EG +  A +L+ +M   GC PN  T + L+ GL + G +     L +E
Sbjct: 216 VTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEE 275

Query: 85  MVN-GMGDFGGIYKP--NVFC--------------------------YGSLIDGLCKDRL 115
           M+N G+      Y P  N FC                          Y +L+ GLCK   
Sbjct: 276 MLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQ 335

Query: 116 VDQTKDLFMEM-KDKG----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           V   +  F +M K K     ++ N+LL   C+   + EA  L + +  R L P + TY  
Sbjct: 336 VTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNT 395

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L++G C+ G ++ A+ L   M  +G  PD+F+Y++L+NG  K   V  A     EM+  G
Sbjct: 396 LIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKG 455

Query: 228 FK--------KIFNEMKLCNVV---------------PETFTCNIFIDGLCKNGHVLEVM 264
            K        +I  EMK+ +                 P+  T N+F+  LC+ G+  E  
Sbjct: 456 LKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEAC 515

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           +L   +           + S+I G  K G    A E+FN++  K +   VV Y +LIHA 
Sbjct: 516 DLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAH 575

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             +  +         M E     +V T+N ++
Sbjct: 576 AAKQMLDLAFMYFSKMLEKSVPANVITYNAII 607



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 169/371 (45%), Gaps = 43/371 (11%)

Query: 8   LMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           L+ F   IR    P  DV   N +++    E  +  A  +   M  FG +P V T +T++
Sbjct: 165 LLVFDKMIRNGLLP--DVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTML 222

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
               + G ++  L+L  EM        G Y PN   Y  L++GL K   ++Q K L  EM
Sbjct: 223 DSYCKEGRVDQALELLSEMQE-----RGCY-PNDVTYNVLVNGLSKKGELEQAKGLIEEM 276

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            + G+N +           C+K   VEA  L+E M+ R   P + TY  L+ G C   +V
Sbjct: 277 LNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQV 336

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
                 F  M +  F PD+ S++ L+ GYC+   + EA              +F+E+K  
Sbjct: 337 TGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAF------------LLFDELKCR 384

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS--LIRGCCKFGIFE 296
           ++VP   T N  I GLC  G++   + L    E+++  LF +IF    L+ GC K G   
Sbjct: 385 DLVPTVITYNTLIHGLCMWGYLDAALRL--KKEMTDQGLFPDIFTYTILVNGCFKLGYVS 442

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIK-KENYLLLSMEEN----GCALDVDT 351
           +A   FN++  K L  D  AYN  I      G++K  +  +  SM+E     G   DV T
Sbjct: 443 MARGFFNEMLSKGLKPDRFAYNTRI-----VGEMKIADTSVAFSMQEEMLAAGFPPDVIT 497

Query: 352 FNTLMISFLQK 362
           +N  + +  Q+
Sbjct: 498 YNVFVHALCQQ 508



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 151/327 (46%), Gaps = 27/327 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V G  + F   ++  + P + V+FNSL+ G+C  G I +A  L  ++      P V T 
Sbjct: 335 QVTGVRLRFSDMLKSKFTP-DIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITY 393

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI GL   G ++  L+L +EM +      G++ P++F Y  L++G  K   V   +  
Sbjct: 394 NTLIHGLCMWGYLDAALRLKKEMTDQ-----GLF-PDIFTYTILVNGCFKLGYVSMARGF 447

Query: 123 FMEMKDKGINA-----NTLLCKKTKLVE---ANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EM  KG+       NT +  + K+ +   A  + E M+  G  P + TY   ++  C 
Sbjct: 448 FNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQ 507

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G    A  L ++M   G +PD  +Y+ +ING+ KN ++ +A            +++FNE
Sbjct: 508 QGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKA------------REVFNE 555

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    V P   T  + I        +      F  +   +    V  +N++I G C    
Sbjct: 556 MLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRR 615

Query: 295 FEIASELFNKLSCKNLVADVVAYNILI 321
            + A + F+++  K ++ +  +Y ILI
Sbjct: 616 MDEAYKYFDEMEEKGILPNKFSYTILI 642



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 45/243 (18%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + +T+N  +   C +GN  +A  L++ M + G  P+  T  ++I G  + G++    +
Sbjct: 492 PPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKARE 551

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           +  EM++      G+  P+V  Y  LI      +++D     F +M +K + AN      
Sbjct: 552 VFNEMLSK-----GV-APSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPAN------ 599

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                                + TY  ++NG C+  +++ A   FD M  KG +P+ FSY
Sbjct: 600 ---------------------VITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSY 638

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           ++LIN  C     EEA+ + REM+               + P++FT ++F+  L ++  V
Sbjct: 639 TILINESCNMGYWEEALRLYREMLDR------------KIQPDSFTHSVFLKNLHRDYQV 686

Query: 261 LEV 263
             V
Sbjct: 687 HAV 689



 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 9/167 (5%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A M F   + +   P N +T+N++I G CM   + +A +   +M   G  PN  +   LI
Sbjct: 584 AFMYFSKMLEKSV-PANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILI 642

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD--QTKDLFM 124
                 G     L+L++EM++         +P+ F +   +  L +D  V   Q  +  +
Sbjct: 643 NESCNMGYWEEALRLYREMLDRK------IQPDSFTHSVFLKNLHRDYQVHAVQCVESLI 696

Query: 125 EMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
           +  +  IN   L  +K  + E     +  M R    +I + + L NG
Sbjct: 697 QNVEDNINVRLLRPRKNVMEENFARSQSPMLRSSAFLIGSSSELGNG 743


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 155/328 (47%), Gaps = 45/328 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+  F  EG IR A  +   +  +G RP+V + +TL+ G  + G++N
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L   M        G+ +P+V+ Y  LI+GLCK+                       
Sbjct: 189 EGFRLKNAM-----QASGV-QPDVYTYSVLINGLCKE----------------------- 219

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
               +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+ ++  M  +   PD
Sbjct: 220 ----SKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CK  ++++A ++  EMI+ G K            P+  T    IDG CK
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK------------PDKITYTTLIDGNCK 323

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENG 344
           Y ++I+   K+G +   + LL  M+ +G
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L    ++E  
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEE-- 126

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKT 141
               +    Y  +++ +  L+    K+  +   + +F  +   G+       NTL+    
Sbjct: 127 ----NLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 142 KLVEAN---RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           KL + N   RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D VAY 
Sbjct: 291 DLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   ++ T+  ++  F +K
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 13/218 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + + + GL P + ++  L+NGY  +G +N    L ++M   G  PDV++YSVLIN
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G CK   +++A NV           +F+EM    +VP   T    IDG CKNG V   ME
Sbjct: 215 GLCKESKMDDA-NV-----------LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           ++  +   +    +  +N+LI G CK G  + A +L +++  K L  D + Y  LI    
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNC 322

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           KEG ++        M +    LD D   T +IS L +E
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLD-DVAYTALISGLCQE 359



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 17/207 (8%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           SK+  A + F   + +   P N VTF +LI G C  G +  A ++ K+M +    P++ T
Sbjct: 220 SKMDDANVLFDEMLDKGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLIT 278

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
            +TLI GL + G++     L  EM+  G+       KP+   Y +LIDG CK+  ++   
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMIMKGL-------KPDKITYTTLIDGNCKEGDLETAF 331

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +    M  + I  + +        LC++ + V+A ++L  M+  GL P I TYT ++N +
Sbjct: 332 EYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEF 391

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFS 199
           C  G V     L   M R G+MP V +
Sbjct: 392 CKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 169/348 (48%), Gaps = 29/348 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTF+ L++ FC  G +  A Q++++M+  GC  N T C+ +I  + + G ++   +  
Sbjct: 284 NEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF- 342

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------- 135
              +N MG +G    P+   Y +++ GLC+    +  K+L  EM  K    N        
Sbjct: 343 ---LNNMGSYG--CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFI 397

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            +LC+K  + +A  L+E M + G    I TY  L+NG+C+ G+V+ A+ LF SM  K   
Sbjct: 398 CILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK--- 454

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+ L+ G C         N  R   L+   ++  EM   +  P   T N+ +   
Sbjct: 455 PNTITYTTLLTGLC---------NAER---LDAAAELLAEMLQKDCAPNVVTFNVLVSFF 502

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + E +EL   +    C   +  +N+L+ G  K    E A EL + L    +  D+
Sbjct: 503 CQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDI 562

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V Y+ +I  L +E ++++   +   +++ G       +N ++++  ++
Sbjct: 563 VTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKR 610



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 166/368 (45%), Gaps = 30/368 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V  AL      + R  +P + VT+  L++  C       A +++ +M   GC PN+ T 
Sbjct: 160 RVGEALSLLDDMLHRGCQP-SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTY 218

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + +I G+ R G ++      +E +N +  +G  ++P+   Y +++ GLC  +  +  ++L
Sbjct: 219 NVIINGMCREGRVDDA----REFLNRLSSYG--FQPDTVSYTTVLKGLCAAKRWEDVEEL 272

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EM +K    N +         C+   +  A ++LE M   G          ++N  C 
Sbjct: 273 FAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK 332

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G+V+ A    ++M   G  PD  SY+ ++ G C+    E+A            K++  E
Sbjct: 333 QGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDA------------KELLKE 380

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M   N  P   T N FI  LC+ G + +   L   +    CE+ +  +N+L+ G C  G 
Sbjct: 381 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR 440

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A ELF  + CK    + + Y  L+  L    ++     LL  M +  CA +V TFN 
Sbjct: 441 VDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 497

Query: 355 LMISFLQK 362
           L+  F QK
Sbjct: 498 LVSFFCQK 505



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 156/361 (43%), Gaps = 40/361 (11%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           LI+  C  G   DA+++++     G   +V   +TL+ G  R G ++   +L   M    
Sbjct: 84  LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP--- 140

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKT 141
                   P+ + Y  +I GLC    V +   L  +M  +G   + +        +CK T
Sbjct: 141 ------VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKST 194

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
              +A  +L+ M  +G  P I TY  ++NG C  G+V+ A    + ++  GF PD  SY+
Sbjct: 195 GFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYT 254

Query: 202 VLINGYCKNFNVEEAMNVSREMI-----------------------LNGFKKIFNEMKLC 238
            ++ G C     E+   +  EM+                       +    ++  +M   
Sbjct: 255 TVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGH 314

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
                T  CNI I+ +CK G V +  +    +    C      + ++++G C+   +E A
Sbjct: 315 GCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDA 374

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            EL  ++  KN   + V +N  I  L ++G I++   L+  M E+GC +++ T+N L+  
Sbjct: 375 KELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNG 434

Query: 359 F 359
           F
Sbjct: 435 F 435



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 157/342 (45%), Gaps = 25/342 (7%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N+ ++      ++ +A++LV +  + G  P+V  C  LI  L R G  +   ++ +    
Sbjct: 47  NARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLR---- 102

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------LCKKT 141
              +  G    +VF Y +L+ G C+   +D  + L   M     +A T       LC + 
Sbjct: 103 -AAERSGT-AVDVFAYNTLVAGYCRYGQLDAARRLIASMP-VAPDAYTYTPIIRGLCDRG 159

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           ++ EA  LL+ M+ RG  P + TYT LL   C       A+ + D M  KG  P++ +Y+
Sbjct: 160 RVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYN 219

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           V+ING C+   V++A      +   GF+            P+T +    + GLC      
Sbjct: 220 VIINGMCREGRVDDAREFLNRLSSYGFQ------------PDTVSYTTVLKGLCAAKRWE 267

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           +V ELF  +   NC      F+ L+R  C+ G+ E A ++  ++S     A+    NI+I
Sbjct: 268 DVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVI 327

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + + K+G++      L +M   GC+ D  ++ T++    + E
Sbjct: 328 NTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAE 369



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 167/371 (45%), Gaps = 39/371 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I G C EG + DA + + +++++G +P+  +  T++ GL          +L 
Sbjct: 214 NIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELF 273

Query: 83  QEMV--NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-- 138
            EM+  N M        PN   +  L+   C+  +V++   +  +M   G  ANT LC  
Sbjct: 274 AEMMEKNCM--------PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNI 325

Query: 139 ------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K+ ++ +A + L  M   G +P   +YT +L G C   +   A  L   M RK 
Sbjct: 326 VINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKN 385

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---KKIFNEM 235
             P+  +++  I   C+   +E+A  +  +M              ++NGF    ++ + +
Sbjct: 386 CPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSAL 445

Query: 236 KLCNVVP---ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           +L   +P    T T    + GLC    +    EL   +   +C   V  FN L+   C+ 
Sbjct: 446 ELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQK 505

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G+ + A EL  ++       +++ YN L+  + K+   ++   LL  +  NG + D+ T+
Sbjct: 506 GLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTY 565

Query: 353 NTLMISFLQKE 363
           +++ I  L +E
Sbjct: 566 SSI-IGVLSRE 575



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 147/327 (44%), Gaps = 23/327 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + +++ +++KG C      DA +L+K+M    C PN  T +T I  L + G +     L 
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLI 413

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANTLL--- 137
           ++M     +       N+  Y +L++G C    VD   +LF  M  K   I   TLL   
Sbjct: 414 EQMSEHGCEV------NIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGL 467

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +L  A  LL  M+Q+   P + T+  L++ +C  G ++ AI L + M   G  P++
Sbjct: 468 CNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNL 527

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ L++G  K+ N EEA+ +   ++ NG            V P+  T +  I  L + 
Sbjct: 528 ITYNTLLDGITKDCNSEEALELLHGLVSNG------------VSPDIVTYSSIIGVLSRE 575

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V E +++F  ++         I+N ++   CK    + A + F  +     + + + Y
Sbjct: 576 DRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 635

Query: 318 NILIHALGKEGQIKKENYLLLSMEENG 344
             LI  L  E  +K+   LL  +   G
Sbjct: 636 ITLIEGLANEDFLKETRDLLRELCSRG 662



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 144/322 (44%), Gaps = 38/322 (11%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N+VTFN+ I   C +G I  A+ L+++M+  GC  N+ T + L+ G    G ++  L+
Sbjct: 387 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------ 134
           L   M           KPN   Y +L+ GLC    +D   +L  EM  K    N      
Sbjct: 447 LFYSMP---------CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 497

Query: 135 --TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             +  C+K  + EA  L+E MM+ G  P + TY  LL+G         A+ L   +   G
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 557

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+ +YS +I    +   VEEA+            K+F+ ++   + P+    N  + 
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAI------------KMFHIVQDLGMRPKAVIYNKILL 605

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK  +    ++ F  +  + C      + +LI G        +A+E F K + ++L+ 
Sbjct: 606 ALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEG--------LANEDFLKET-RDLLR 656

Query: 313 DVVAYNILIHALGKEGQIKKEN 334
           ++ +  +L   L +E + K  N
Sbjct: 657 ELCSRGVLNKNLLEEWRPKFSN 678


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 170/356 (47%), Gaps = 30/356 (8%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           Y P  D  F S +   C   N+ DAS  L+ K + FGCR      + L++ L   G ++ 
Sbjct: 176 YSP--DARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHD 233

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
            + L +  +        +Y P+V+ +  +I G+C+   V +  +L   M + G + +T+ 
Sbjct: 234 VVALFERWIQDR-----VYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVT 288

Query: 137 -------LCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                  LC+  ++   + +L  + + G+  P + T+T +++GYC  GK+  A+A+++ M
Sbjct: 289 HNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 348

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
              G MP+  +Y+VLINGY K  ++  A+ V            + +M      P+  T +
Sbjct: 349 VASGIMPNTVTYNVLINGYGKVGDLGSAVEV------------YQQMTRLRCPPDVVTFS 396

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             IDG C+ G + + + ++  +     +  V  F+ +I   CK    + A  L N+L+ +
Sbjct: 397 SLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLR 456

Query: 309 -NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            ++      YN +I  L K G++ + N +   MEE GC  D  T+  L+I +  K 
Sbjct: 457 PDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKS 512



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 164/346 (47%), Gaps = 30/346 (8%)

Query: 3   KVLGALMAFGSFIR-RCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           +V   +  F  +I+ R Y P  DV +FN +IKG C  G ++ A +LV++M  FGC P+  
Sbjct: 230 RVHDVVALFERWIQDRVYSP--DVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTV 287

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T + L+ GL RT  ++   + H+ +     D  G+  PNV  + S+I G CK   ++   
Sbjct: 288 THNILVDGLCRTNEVS---RGHEVLRRLQRD--GVCMPNVVTFTSVISGYCKAGKLEDAM 342

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            ++ +M   GI  NT+          K   L  A  + + M +    P + T++ L++GY
Sbjct: 343 AVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 402

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  G+++ A+ ++  MA+    P+V+++S++I+  CK    +EA+             + 
Sbjct: 403 CRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIG------------LL 450

Query: 233 NEMKL-CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           NE+ L  ++ P+ F  N  ID LCK G V E   +   +E   C      +  LI G C 
Sbjct: 451 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCM 510

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
                 A   F+++       D +  N  I  L K G   + ++++
Sbjct: 511 KSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVM 556



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 131/315 (41%), Gaps = 25/315 (7%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           P+  +C  +I  L R+G     L+L  +M    G     Y P+      L+       L+
Sbjct: 142 PSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYG-----YSPDARFLSFLVSSCTCANLL 196

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQ-RGLNPVIFTYTP 167
           D +  L  +  + G              L  + ++ +   L E  +Q R  +P ++++  
Sbjct: 197 DASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNV 256

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           ++ G C VG+V  A+ L + M   G  PD  ++++L++G C+   V     V R +  +G
Sbjct: 257 VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDG 316

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                        +P   T    I G CK G + + M ++  +  S        +N LI 
Sbjct: 317 V-----------CMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLIN 365

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G  K G    A E++ +++      DVV ++ LI    + GQ+     +   M ++    
Sbjct: 366 GYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQP 425

Query: 348 DVDTFNTLMISFLQK 362
           +V TF+ ++ S  ++
Sbjct: 426 NVYTFSIIIHSLCKQ 440


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 159/351 (45%), Gaps = 26/351 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V +++++  +C  G   DA ++++ +   G  PNV T   L+ G  + G M      
Sbjct: 251 VNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEA--- 307

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            + +V  M + G I    V  YG +I+G C+   +D    +  EM+D GI+ N       
Sbjct: 308 -ERVVKEMKETGDIVVDEV-AYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTM 365

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++ E  ++L+ M   G+ P  ++Y  L++GYC  G +  A  +   M R G 
Sbjct: 366 INGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGL 425

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
                +Y+ L+ G+C    +++A+ +   M+  G            V P   +C+  +DG
Sbjct: 426 AATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRG------------VAPNEISCSTLLDG 473

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           L K G   + + L+           V  FN++I G CK G    A EL +++       D
Sbjct: 474 LFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPD 533

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI-SFLQKE 363
            + Y  L     K GQ+    +L+  ME  G A  V+ FN+ +   F+ K+
Sbjct: 534 SLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQ 584



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 170/356 (47%), Gaps = 28/356 (7%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRR 71
           S  R+   P N VT+  L+KG+C +G + +A ++VK+M   G    +      +I G  +
Sbjct: 278 SLQRKGLSP-NVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQ 336

Query: 72  TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
            G M+   ++  EM +      GI+  N+F Y ++I+GLCK   +++ + +  EM+D G+
Sbjct: 337 RGRMDDATRVRNEMRDA-----GIHV-NLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGM 390

Query: 132 NA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
                  NTL+   C++  + +A  +  +M++ GL     TY  LL G+C +  ++ A+ 
Sbjct: 391 RPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALR 450

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           L+  M ++G  P+  S S L++G  K    E+A+N+ +E +  G  K        NV+  
Sbjct: 451 LWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAK--------NVI-- 500

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T N  I+GLCK G + E  EL   ++   C      + +L  G CK G    A+ L N
Sbjct: 501 --TFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMN 558

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           K+        V  +N  I       Q  K N +   M   G + ++ T+  L+  +
Sbjct: 559 KMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGW 614



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 178/380 (46%), Gaps = 56/380 (14%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           RC  P + +T+ +L  G+C  G +  A+ L+ KM   G  P+V   ++ ITG       +
Sbjct: 529 RC--PPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWH 586

Query: 77  LTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
               +H EM   G+        PN+  YG+LI G CK+  + +  +L+ EM + G+N N 
Sbjct: 587 KVNDIHSEMSARGL-------SPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNV 639

Query: 136 LLC--------KKTKLVEANRLLELMMQRGLNP--------------VIFT--------- 164
            +C        K+ K+ EAN +L+ ++   + P              V+ T         
Sbjct: 640 FICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSA 699

Query: 165 ---YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
              +  ++ G C  G++  A +LF+S+  K F+PD F+YS LI+G   + +++EA ++  
Sbjct: 700 NVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRD 759

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
            M+  G            + P   T N  I GLCK+G +   + LF  L+          
Sbjct: 760 VMLSAG------------LTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGIT 807

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N+LI   CK G    A +L  K+  + +   V+ Y+ILI+ L  +G +++   LL  M 
Sbjct: 808 YNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMI 867

Query: 342 ENGCALDVDTFNTLMISFLQ 361
           EN    +  T+ TL+  +++
Sbjct: 868 ENNVDPNYITYCTLIHGYIK 887



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 164/350 (46%), Gaps = 28/350 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +++V +  +I G+C  G + DA+++  +M   G   N+   +T+I GL + G M    K+
Sbjct: 322 VDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKV 381

Query: 82  HQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            QEM + GM       +P+ + Y +LIDG C++  + +  ++   M   G+ A TL    
Sbjct: 382 LQEMEDVGM-------RPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNT 434

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                C    + +A RL  LM++RG+ P   + + LL+G    GK   A+ L+     +G
Sbjct: 435 LLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARG 494

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              +V +++ +ING CK   + EA            +++ + MK     P++ T     D
Sbjct: 495 LAKNVITFNTVINGLCKIGRMAEA------------EELLDRMKELRCPPDSLTYRTLFD 542

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CK G +     L   +E       VE+FNS I G      +   +++ +++S + L  
Sbjct: 543 GYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSP 602

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           ++V Y  LI    KEG + +   L   M  NG   +V   + LM  F ++
Sbjct: 603 NLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKE 652



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 172/398 (43%), Gaps = 73/398 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+F+ L++     G +  A  +   M   GCRP++ +C+ L+  L ++G+  +       
Sbjct: 149 VSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMA-----A 203

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV G     G+  P+ F    +    C+D  V Q  +   EM+  G+  N +        
Sbjct: 204 MVYGQMRIAGVL-PDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDC 262

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-FMP 195
            C      +A R+LE + ++GL+P + TYT L+ GYC  G++  A  +   M   G  + 
Sbjct: 263 YCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVV 322

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIF 232
           D  +Y ++INGYC+   +++A  V  EM              ++NG          +K+ 
Sbjct: 323 DEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVL 382

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            EM+   + P+ ++ N  IDG C+ G + +  E+   +  +        +N+L++G C  
Sbjct: 383 QEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSL 442

Query: 293 GIFEIASELF----------NKLSC-------------------------KNLVADVVAY 317
              + A  L+          N++SC                         + L  +V+ +
Sbjct: 443 HAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITF 502

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           N +I+ L K G++ +   LL  M+E  C  D  T+ TL
Sbjct: 503 NTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTL 540



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 158/366 (43%), Gaps = 52/366 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N+L+KGFC    I DA +L   M   G  PN  +C TL+ GL + G     L L +E
Sbjct: 430 LTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKE 489

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            +       G+ K NV  + ++I+GLCK   + + ++L   MK+     ++L        
Sbjct: 490 TLAR-----GLAK-NVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDG 543

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK  +L  A  L+  M   G  P +  +   + G+ +  + +    +   M+ +G  P+
Sbjct: 544 YCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPN 603

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y  LI G+CK  N+ EA N+  EM+ NG              P  F C+  +    K
Sbjct: 604 LVTYGALIAGWCKEGNLHEACNLYFEMVNNGMN------------PNVFICSALMSCFYK 651

Query: 257 NGHVLEV---------MELFP-----TLEISNCELFVE------------IFNSLIRGCC 290
            G V E          +++ P     T+EI      V+            ++N +I G C
Sbjct: 652 EGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLC 711

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G    A  LF  L  K  + D   Y+ LIH     G I +   L   M   G   ++ 
Sbjct: 712 KSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNII 771

Query: 351 TFNTLM 356
           T+N+L+
Sbjct: 772 TYNSLI 777



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 158/344 (45%), Gaps = 58/344 (16%)

Query: 12  GSFIRRCYRPLND--------------VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRP 57
           G FI + +  +ND              VT+ +LI G+C EGN+ +A  L  +M   G  P
Sbjct: 578 GHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNP 637

Query: 58  NVTTCDTLITGLRRTGNMNLTLKLHQEMVN----------------------GMGDFGGI 95
           NV  C  L++   + G ++    + Q++VN                       + D G  
Sbjct: 638 NVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIAD-GNP 696

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-----GINANTLL--CKKTKLV-EAN 147
           +  NV  +  +I GLCK   +   K LF  +++K         ++L+  C  +  + EA 
Sbjct: 697 HSANVM-WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAF 755

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            L ++M+  GL P I TY  L+ G C  GK++ A+ LF+ +  KG  P+  +Y+ LI+ Y
Sbjct: 756 SLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEY 815

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK     EA  + ++M+  G +            P   T +I I GLC  G++ E ++L 
Sbjct: 816 CKEGKTTEAFKLKQKMVEEGIQ------------PTVITYSILIYGLCTQGYMEEAIKLL 863

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             +  +N +     + +LI G  K G  E  S+L++++  + L+
Sbjct: 864 DQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLL 907



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 15/203 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + ++  A   F S   + + P ++ T++SLI G    G+I +A  L   M + G  PN+ 
Sbjct: 713 SGRIADAKSLFESLRNKRFLP-DNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNII 771

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T ++LI GL ++G ++  + L  ++ +      GI  PN   Y +LID  CK+    +  
Sbjct: 772 TYNSLIYGLCKSGKLSRAVNLFNKLQSK-----GI-SPNGITYNTLIDEYCKEGKTTEAF 825

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            L  +M ++GI    +        LC +  + EA +LL+ M++  ++P   TY  L++GY
Sbjct: 826 KLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGY 885

Query: 173 CLVGKVNVAIALFDSMARKGFMP 195
              G +     L+D M  +G +P
Sbjct: 886 IKSGNMEEISKLYDEMHIRGLLP 908



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 107/242 (44%), Gaps = 24/242 (9%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           +L  A  + + M + G  P + +   LLN     G   +A  ++  M   G +PD F+ +
Sbjct: 163 QLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVA 222

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLC 238
           ++   YC++  V +A+    EM   G                        ++I   ++  
Sbjct: 223 IMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRK 282

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKFGIFEI 297
            + P   T  + + G CK+G + E   +   ++ +   +  E+ +  +I G C+ G  + 
Sbjct: 283 GLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDD 342

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A+ + N++    +  ++  YN +I+ L K G++++   +L  ME+ G   D  ++NTL+ 
Sbjct: 343 ATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLID 402

Query: 358 SF 359
            +
Sbjct: 403 GY 404


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 159/351 (45%), Gaps = 26/351 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V +++++  +C  G   DA ++++ +   G  PNV T   L+ G  + G M      
Sbjct: 251 VNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEA--- 307

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            + +V  M + G I    V  YG +I+G C+   +D    +  EM+D GI+ N       
Sbjct: 308 -ERVVKEMKETGDIVVDEV-AYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTM 365

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++ E  ++L+ M   G+ P  ++Y  L++GYC  G +  A  +   M R G 
Sbjct: 366 INGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGL 425

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
                +Y+ L+ G+C    +++A+ +   M+  G            V P   +C+  +DG
Sbjct: 426 AATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRG------------VAPNEISCSTLLDG 473

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           L K G   + + L+           V  FN++I G CK G    A EL +++       D
Sbjct: 474 LFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPD 533

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI-SFLQKE 363
            + Y  L     K GQ+    +L+  ME  G A  V+ FN+ +   F+ K+
Sbjct: 534 SLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQ 584



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 170/356 (47%), Gaps = 28/356 (7%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRR 71
           S  R+   P N VT+  L+KG+C +G + +A ++VK+M   G    +      +I G  +
Sbjct: 278 SLQRKGLSP-NVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQ 336

Query: 72  TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
            G M+   ++  EM +      GI+  N+F Y ++I+GLCK   +++ + +  EM+D G+
Sbjct: 337 RGRMDDATRVRNEMRDA-----GIHV-NLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGM 390

Query: 132 NA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
                  NTL+   C++  + +A  +  +M++ GL     TY  LL G+C +  ++ A+ 
Sbjct: 391 RPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALR 450

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
           L+  M ++G  P+  S S L++G  K    E+A+N+ +E +  G  K        NV+  
Sbjct: 451 LWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAK--------NVI-- 500

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T N  I+GLCK G + E  EL   ++   C      + +L  G CK G    A+ L N
Sbjct: 501 --TFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMN 558

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           K+        V  +N  I       Q  K N +   M   G + ++ T+  L+  +
Sbjct: 559 KMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGW 614



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 164/350 (46%), Gaps = 28/350 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +++V +  +I G+C  G + DA+++  +M   G   N+   +T+I GL + G M    K+
Sbjct: 322 VDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKV 381

Query: 82  HQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            QEM + GM       +P+ + Y +LIDG C++  + +  ++   M   G+ A TL    
Sbjct: 382 LQEMEDVGM-------RPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNT 434

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                C    + +A RL  LM++RG+ P   + + LL+G    GK   A+ L+     +G
Sbjct: 435 LLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARG 494

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              +V +++ +ING CK   + EA            +++ + MK     P++ T     D
Sbjct: 495 LAKNVITFNTVINGLCKIGRMAEA------------EELLDRMKELRCPPDSLTYRTLFD 542

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CK G +     L   +E       VE+FNS I G      +   +++ +++S + L  
Sbjct: 543 GYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSP 602

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           ++V Y  LI    KEG + +   L   M  NG   +V   + LM  F ++
Sbjct: 603 NLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKE 652



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 172/398 (43%), Gaps = 73/398 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+F+ L++     G +  A  +   M   GCRP++ +C+ L+  L ++G+  +       
Sbjct: 149 VSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMA-----A 203

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV G     G+  P+ F    +    C+D  V Q  +   EM+  G+  N +        
Sbjct: 204 MVYGQMRIAGVL-PDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDC 262

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-FMP 195
            C      +A R+LE + ++GL+P + TYT L+ GYC  G++  A  +   M   G  + 
Sbjct: 263 YCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVV 322

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIF 232
           D  +Y ++INGYC+   +++A  V  EM              ++NG          +K+ 
Sbjct: 323 DEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVL 382

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            EM+   + P+ ++ N  IDG C+ G + +  E+   +  +        +N+L++G C  
Sbjct: 383 QEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSL 442

Query: 293 GIFEIASELF----------NKLSC-------------------------KNLVADVVAY 317
              + A  L+          N++SC                         + L  +V+ +
Sbjct: 443 HAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITF 502

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           N +I+ L K G++ +   LL  M+E  C  D  T+ TL
Sbjct: 503 NTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTL 540



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 158/366 (43%), Gaps = 52/366 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N+L+KGFC    I DA +L   M   G  PN  +C TL+ GL + G     L L +E
Sbjct: 430 LTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKE 489

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            +       G+ K NV  + ++I+GLCK   + + ++L   MK+     ++L        
Sbjct: 490 TLAR-----GLAK-NVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDG 543

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK  +L  A  L+  M   G  P +  +   + G+ +  + +    +   M+ +G  P+
Sbjct: 544 YCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPN 603

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y  LI G+CK  N+ EA N+  EM+ NG              P  F C+  +    K
Sbjct: 604 LVTYGALIAGWCKEGNLHEACNLYFEMVNNGMN------------PNVFICSALMSCFYK 651

Query: 257 NGHVLEV---------MELFP-----TLEISNCELFVE------------IFNSLIRGCC 290
            G V E          +++ P     T+EI      V+            ++N +I G C
Sbjct: 652 EGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLC 711

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G    A  LF  L  K  + D   Y+ LIH     G I +   L   M   G   ++ 
Sbjct: 712 KSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNII 771

Query: 351 TFNTLM 356
           T+N+L+
Sbjct: 772 TYNSLI 777



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 167/379 (44%), Gaps = 72/379 (18%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           RC  P + +T+ +L  G+C  G +  A+ L+ KM   G  P+V   ++ ITG       +
Sbjct: 529 RC--PPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWH 586

Query: 77  LTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
               +H EM   G+        PN+  YG+LI G CK+  + +  +L+ EM + G+N N 
Sbjct: 587 KVNDIHSEMSARGL-------SPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNV 639

Query: 136 LLC--------KKTKLVEANRLLELMMQRGLNP--------------VIFT--------- 164
            +C        K+ K+ EAN +L+ ++   + P              V+ T         
Sbjct: 640 FICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSA 699

Query: 165 ---YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
              +  ++ G C  G++  A +LF+S+  K F+PD F+YS LI+G   + +++EA ++  
Sbjct: 700 NVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRD 759

Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281
            M+  G            + P   T N  I GLCK+G +   + LF  L+          
Sbjct: 760 VMLSAG------------LTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGIT 807

Query: 282 FNSLIRGCCKFG----------------IFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +N+LI   CK G                  E A +L +++   N+  + + Y  LIH   
Sbjct: 808 YNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYI 867

Query: 326 KEGQIKKENYLLLSMEENG 344
           K G +++ + L   M   G
Sbjct: 868 KSGNMEEISKLYDEMHIRG 886



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 50/309 (16%)

Query: 12  GSFIRRCYRPLND--------------VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRP 57
           G FI + +  +ND              VT+ +LI G+C EGN+ +A  L  +M   G  P
Sbjct: 578 GHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNP 637

Query: 58  NVTTCDTLITGLRRTGNMNLTLKLHQEMVN----------------------GMGDFGGI 95
           NV  C  L++   + G ++    + Q++VN                       + D G  
Sbjct: 638 NVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIAD-GNP 696

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-----GINANTLL--CKKTKLV-EAN 147
           +  NV  +  +I GLCK   +   K LF  +++K         ++L+  C  +  + EA 
Sbjct: 697 HSANVM-WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAF 755

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            L ++M+  GL P I TY  L+ G C  GK++ A+ LF+ +  KG  P+  +Y+ LI+ Y
Sbjct: 756 SLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEY 815

Query: 208 CKNFNVEEAMNVSREMILNGFK----KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           CK     EA  + ++M+  G+     K+ ++M   NV P   T    I G  K+G++ E+
Sbjct: 816 CKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEI 875

Query: 264 MELFPTLEI 272
            +L+  + I
Sbjct: 876 SKLYDEMHI 884



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 30/196 (15%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           +V +N +I G C  G I DA  L + +      P+  T  +LI G   +G+++    L  
Sbjct: 700 NVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRD 759

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL- 137
            M++      G+  PN+  Y SLI GLCK   + +  +LF +++ KGI+ N     TL+ 
Sbjct: 760 VMLSA-----GL-TPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLID 813

Query: 138 --CKKTKLVEANRLLELMMQRG----------------LNPVIFTYTPLLNGYCLVGKVN 179
             CK+ K  EA +L + M++ G                ++P   TY  L++GY   G + 
Sbjct: 814 EYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNME 873

Query: 180 VAIALFDSMARKGFMP 195
               L+D M  +G +P
Sbjct: 874 EISKLYDEMHIRGLLP 889



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 107/242 (44%), Gaps = 24/242 (9%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           +L  A  + + M + G  P + +   LLN     G   +A  ++  M   G +PD F+ +
Sbjct: 163 QLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVA 222

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLC 238
           ++   YC++  V +A+    EM   G                        ++I   ++  
Sbjct: 223 IMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRK 282

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKFGIFEI 297
            + P   T  + + G CK+G + E   +   ++ +   +  E+ +  +I G C+ G  + 
Sbjct: 283 GLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDD 342

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A+ + N++    +  ++  YN +I+ L K G++++   +L  ME+ G   D  ++NTL+ 
Sbjct: 343 ATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLID 402

Query: 358 SF 359
            +
Sbjct: 403 GY 404


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 169/348 (48%), Gaps = 29/348 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTF+ L++ FC  G +  A Q++++M+  GC  N T C+ +I  + + G ++   +  
Sbjct: 315 NEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF- 373

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------- 135
              +N MG +G    P+   Y +++ GLC+    +  K+L  EM  K    N        
Sbjct: 374 ---LNNMGSYG--CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFI 428

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            +LC+K  + +A  L+E M + G    I TY  L+NG+C+ G+V+ A+ LF SM  K   
Sbjct: 429 CILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK--- 485

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+ L+ G C         N  R   L+   ++  EM   +  P   T N+ +   
Sbjct: 486 PNTITYTTLLTGLC---------NAER---LDAAAELLAEMLQKDCAPNVVTFNVLVSFF 533

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + E +EL   +    C   +  +N+L+ G  K    E A EL + L    +  D+
Sbjct: 534 CQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDI 593

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V Y+ +I  L +E ++++   +   +++ G       +N ++++  ++
Sbjct: 594 VTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKR 641



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 166/368 (45%), Gaps = 30/368 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V  AL      + R  +P + VT+  L++  C       A +++ +M   GC PN+ T 
Sbjct: 191 RVGEALSLLDDMLHRGCQP-SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTY 249

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + +I G+ R G ++      +E +N +  +G  ++P+   Y +++ GLC  +  +  ++L
Sbjct: 250 NVIINGMCREGRVDDA----REFLNRLSSYG--FQPDTVSYTTVLKGLCAAKRWEDVEEL 303

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EM +K    N +         C+   +  A ++LE M   G          ++N  C 
Sbjct: 304 FAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK 363

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G+V+ A    ++M   G  PD  SY+ ++ G C+    E+A            K++  E
Sbjct: 364 QGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDA------------KELLKE 411

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M   N  P   T N FI  LC+ G + +   L   +    CE+ +  +N+L+ G C  G 
Sbjct: 412 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR 471

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A ELF  + CK    + + Y  L+  L    ++     LL  M +  CA +V TFN 
Sbjct: 472 VDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 528

Query: 355 LMISFLQK 362
           L+  F QK
Sbjct: 529 LVSFFCQK 536



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 156/361 (43%), Gaps = 40/361 (11%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           LI+  C  G   DA+++++     G   +V   +TL+ G  R G ++   +L   M    
Sbjct: 115 LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP--- 171

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKT 141
                   P+ + Y  +I GLC    V +   L  +M  +G   + +        +CK T
Sbjct: 172 ------VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKST 225

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
              +A  +L+ M  +G  P I TY  ++NG C  G+V+ A    + ++  GF PD  SY+
Sbjct: 226 GFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYT 285

Query: 202 VLINGYCKNFNVEEAMNVSREMI-----------------------LNGFKKIFNEMKLC 238
            ++ G C     E+   +  EM+                       +    ++  +M   
Sbjct: 286 TVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGH 345

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
                T  CNI I+ +CK G V +  +    +    C      + ++++G C+   +E A
Sbjct: 346 GCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDA 405

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            EL  ++  KN   + V +N  I  L ++G I++   L+  M E+GC +++ T+N L+  
Sbjct: 406 KELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNG 465

Query: 359 F 359
           F
Sbjct: 466 F 466



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 150/327 (45%), Gaps = 25/327 (7%)

Query: 43  ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102
           A++LV +  + G  P+V  C  LI  L R G  +   ++ +       +  G    +VF 
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLR-----AAERSGTAV-DVFA 146

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------LCKKTKLVEANRLLELMMQR 156
           Y +L+ G C+   +D  + L   M     +A T       LC + ++ EA  LL+ M+ R
Sbjct: 147 YNTLVAGYCRYGQLDAARRLIASMP-VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR 205

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G  P + TYT LL   C       A+ + D M  KG  P++ +Y+V+ING C+   V++A
Sbjct: 206 GCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 265

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
                 +   GF+            P+T +    + GLC      +V ELF  +   NC 
Sbjct: 266 REFLNRLSSYGFQ------------PDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM 313

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
                F+ L+R  C+ G+ E A ++  ++S     A+    NI+I+ + K+G++      
Sbjct: 314 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 373

Query: 337 LLSMEENGCALDVDTFNTLMISFLQKE 363
           L +M   GC+ D  ++ T++    + E
Sbjct: 374 LNNMGSYGCSPDTISYTTVLKGLCRAE 400



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 167/371 (45%), Gaps = 39/371 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I G C EG + DA + + +++++G +P+  +  T++ GL          +L 
Sbjct: 245 NIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELF 304

Query: 83  QEMV--NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-- 138
            EM+  N M        PN   +  L+   C+  +V++   +  +M   G  ANT LC  
Sbjct: 305 AEMMEKNCM--------PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNI 356

Query: 139 ------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K+ ++ +A + L  M   G +P   +YT +L G C   +   A  L   M RK 
Sbjct: 357 VINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKN 416

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---KKIFNEM 235
             P+  +++  I   C+   +E+A  +  +M              ++NGF    ++ + +
Sbjct: 417 CPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSAL 476

Query: 236 KLCNVVP---ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           +L   +P    T T    + GLC    +    EL   +   +C   V  FN L+   C+ 
Sbjct: 477 ELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQK 536

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G+ + A EL  ++       +++ YN L+  + K+   ++   LL  +  NG + D+ T+
Sbjct: 537 GLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTY 596

Query: 353 NTLMISFLQKE 363
           +++ I  L +E
Sbjct: 597 SSI-IGVLSRE 606



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 147/327 (44%), Gaps = 23/327 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + +++ +++KG C      DA +L+K+M    C PN  T +T I  L + G +     L 
Sbjct: 385 DTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLI 444

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANTLL--- 137
           ++M     +       N+  Y +L++G C    VD   +LF  M  K   I   TLL   
Sbjct: 445 EQMSEHGCEV------NIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGL 498

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +L  A  LL  M+Q+   P + T+  L++ +C  G ++ AI L + M   G  P++
Sbjct: 499 CNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNL 558

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ L++G  K+ N EEA+ +   ++ NG            V P+  T +  I  L + 
Sbjct: 559 ITYNTLLDGITKDCNSEEALELLHGLVSNG------------VSPDIVTYSSIIGVLSRE 606

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V E +++F  ++         I+N ++   CK    + A + F  +     + + + Y
Sbjct: 607 DRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 666

Query: 318 NILIHALGKEGQIKKENYLLLSMEENG 344
             LI  L  E  +K+   LL  +   G
Sbjct: 667 ITLIEGLANEDFLKETRDLLRELCSRG 693



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 144/322 (44%), Gaps = 38/322 (11%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N+VTFN+ I   C +G I  A+ L+++M+  GC  N+ T + L+ G    G ++  L+
Sbjct: 418 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 477

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------ 134
           L   M           KPN   Y +L+ GLC    +D   +L  EM  K    N      
Sbjct: 478 LFYSMP---------CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 528

Query: 135 --TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             +  C+K  + EA  L+E MM+ G  P + TY  LL+G         A+ L   +   G
Sbjct: 529 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 588

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+ +YS +I    +   VEEA+            K+F+ ++   + P+    N  + 
Sbjct: 589 VSPDIVTYSSIIGVLSREDRVEEAI------------KMFHIVQDLGMRPKAVIYNKILL 636

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK  +    ++ F  +  + C      + +LI G        +A+E F K + ++L+ 
Sbjct: 637 ALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEG--------LANEDFLKET-RDLLR 687

Query: 313 DVVAYNILIHALGKEGQIKKEN 334
           ++ +  +L   L +E + K  N
Sbjct: 688 ELCSRGVLNKNLLEEWRPKFSN 709


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 164/371 (44%), Gaps = 37/371 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VT+N+LI GF  EG I  A+Q+  +M+ F   PN  T + LI G    G+    L+L 
Sbjct: 337 NEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLL 396

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK----GINANTLL- 137
             M     +  G+ + N   YG+L++GLCK    +  K L   M+      G  A T+L 
Sbjct: 397 DHM-----EAAGL-RLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLI 450

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   L EA +L+  M + G+NP + TY+ L+NG+C VG +  A  +   M R G +
Sbjct: 451 DGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLV 510

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
            +   YS LI  +C++ NV EAM V   M  NG                        +K 
Sbjct: 511 LNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKF 570

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
              M    +VP + T +  I+G    G  L     F  +           + SL++G CK
Sbjct: 571 LCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCK 630

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A +  N+L       D V YN L+    K G + +   L   M +N    D  T
Sbjct: 631 GGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYT 690

Query: 352 FNTLMISFLQK 362
           +++L+    +K
Sbjct: 691 YSSLLTGLCRK 701



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 140/295 (47%), Gaps = 31/295 (10%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTL------LCKKTKLVEAN 147
           +KP+V+    ++  + KD+  +    LF EM DKGI  N  T       LC +  L +A 
Sbjct: 194 FKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAG 253

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            LL+ M + G  P I TY  LLN YC  G+   AI L D M  KG   DV +Y+V I+  
Sbjct: 254 NLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNL 313

Query: 208 CKNFNVEEAM----NVSREMI----------LNGFKK---------IFNEMKLCNVVPET 244
           C N    +A      + +EMI          +NGF K         +FNEM   ++ P  
Sbjct: 314 CTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNC 373

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T N  I G C  G   E + L   +E +   L    + +L+ G CK   FE+A  L  +
Sbjct: 374 VTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLER 433

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +   ++V   +AY +LI  L K G + +   L+ +M ++G   DV T+++L+  F
Sbjct: 434 MRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGF 488



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 167/375 (44%), Gaps = 40/375 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +  + +  LI G C  G + +A QLV  M   G  P+V T  +LI G  R GN    +K 
Sbjct: 441 VGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGN----IKS 496

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------- 134
            +E++  M   G +   N   Y +LI   C+   V +   ++  M   G  A+       
Sbjct: 497 AKEIICRMYRSGLVL--NKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVL 554

Query: 135 -TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
            + LC+  KL EA + L  M + GL P   TY  ++NGY  +G    A + FD M + G 
Sbjct: 555 VSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQ 614

Query: 194 MPDVFSYSVLINGYCKNFNVEEA-----------------------MNVSREMILNGFKK 230
            P  F+Y  L+ G CK  N+ EA                           +   L+    
Sbjct: 615 HPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVA 674

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE--IFNSLIRG 288
           +F++M   NV+P+++T +  + GLC+ G  +  + LF T  +    LF    ++  L+ G
Sbjct: 675 LFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGT-AMGRGTLFPNHVMYTCLVDG 733

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K G  + A   F ++  K    D VA+N +I +  + GQ+ K N    +M   G   +
Sbjct: 734 LSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPN 793

Query: 349 VDTFNTLMISFLQKE 363
           + T+N L+  F +K+
Sbjct: 794 LATYNILLHGFSKKQ 808



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 157/342 (45%), Gaps = 26/342 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI G C+EGN++ A  L+K+M   G  P + T +TL+    + G     ++L   M
Sbjct: 235 TFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYM 294

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           +       GI + +V  Y   ID LC +    +   L  +M+ + I+ N +         
Sbjct: 295 I-----CKGI-EADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGF 348

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K+ K+  A ++   M +  L+P   TY  L+ G+C VG    A+ L D M   G   + 
Sbjct: 349 VKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNE 408

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y  L+NG CK+   E A            K++   M++ ++V       + IDGLCKN
Sbjct: 409 VTYGTLLNGLCKHEKFELA------------KRLLERMRVNDMVVGHIAYTVLIDGLCKN 456

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + E ++L   +        V  ++SLI G C+ G  + A E+  ++    LV + + Y
Sbjct: 457 GMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIY 516

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + LI+   + G + +   +   M  NG   D  T N L+ S 
Sbjct: 517 STLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSL 558



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 176/415 (42%), Gaps = 64/415 (15%)

Query: 5   LGALMAFGSFIRRCYRP---LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +G + +    I R YR    LN + +++LI  FC  GN+ +A ++   M   G   +  T
Sbjct: 491 VGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFT 550

Query: 62  CDTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGI----------- 95
           C+ L++ L R G +    K    M               +NG G  G             
Sbjct: 551 CNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMI 610

Query: 96  ---YKPNVFCYGSLIDGLCKD-RLVDQTKDL----FMEMKDKGINANTLL---CKKTKLV 144
                P+ F YGSL+ GLCK   LV+  K L    ++      +  NTLL   CK   L 
Sbjct: 611 KCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLH 670

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF-DSMARKGFMPDVFSYSVL 203
           EA  L + M+Q  + P  +TY+ LL G C  GK   A+ LF  +M R    P+   Y+ L
Sbjct: 671 EAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCL 730

Query: 204 INGYCKNFNVEEAMNVSREMILNG-------FKKI----------------FNEMKLCNV 240
           ++G  K  + + A     EM+  G       F  I                F+ M+   V
Sbjct: 731 VDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGV 790

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P   T NI + G  K   +L  + L+ T+           F+SLI G  K GI ++  +
Sbjct: 791 CPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVK 850

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           L  K+  +  +AD   +NILI+   + G+++K   L+  M   G   D DT+N +
Sbjct: 851 LLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHI 905



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 145/353 (41%), Gaps = 37/353 (10%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            + V FN++I      G +  A+     M  +G  PN+ T + L+ G  +   +   L L+
Sbjct: 758  DTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLY 817

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL 137
              M+       GI+ P+   + SLI GL K  + D    L  +M  +G  A     N L+
Sbjct: 818  STMMRE-----GIF-PDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILI 871

Query: 138  CKKT---KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             K +   K+ +A  L+  M   G+ P   TY  + NG         +  +   M   G +
Sbjct: 872  NKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVI 931

Query: 195  PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------I 231
            P    Y  LING C+  +++ A  +  EM   GF                         +
Sbjct: 932  PKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLV 991

Query: 232  FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
             + M    ++P   T    +   C++  + E ++L   +E+   +L V  +N LI G C 
Sbjct: 992  LDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCA 1051

Query: 292  FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             G    A EL+ ++  ++L  ++  Y +L+ A+     + +   LL  ++E G
Sbjct: 1052 NGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQERG 1104



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 167/421 (39%), Gaps = 74/421 (17%)

Query: 6    GALMAFGSFIRRC-YRP--LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            G L+    F+ R  Y P  ++ V +N+L+   C  GN+ +A  L  KM      P+  T 
Sbjct: 632  GNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTY 691

Query: 63   DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             +L+TGL R G     + L       MG   G   PN   Y  L+DGL K          
Sbjct: 692  SSLLTGLCRKGKAVTAVCLFG---TAMGR--GTLFPNHVMYTCLVDGLSKAGHPKAAFYF 746

Query: 123  FMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
            F EM  KG   +T+          ++ ++++AN     M   G+ P + TY  LL+G+  
Sbjct: 747  FEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSK 806

Query: 175  VGKVNVAIALFDSMARKGFMPD-----------------------------------VFS 199
               +   ++L+ +M R+G  PD                                    F+
Sbjct: 807  KQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFT 866

Query: 200  YSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEMK 236
            +++LIN Y ++  + +A ++   M              I NG  K         + +EM 
Sbjct: 867  FNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEML 926

Query: 237  LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
               V+P+       I+G+C+ G +    +L   +E           ++++RG    G  E
Sbjct: 927  ENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTE 986

Query: 297  IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             A  + + +    L+  +  +  L+H   ++ +I +   L   ME  G  LDV  +N L+
Sbjct: 987  DAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLI 1046

Query: 357  I 357
            +
Sbjct: 1047 M 1047



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 119/264 (45%), Gaps = 25/264 (9%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL 158
           +++C  + I  L K R+ D  K +   +   GI + ++      L++   L         
Sbjct: 113 HMYCLTAHI--LVKARMYDSAKSILRHLCQMGIGSKSIF---GALMDTYPLC-------- 159

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           N +   +  L+  Y   G ++ A+  F+ +   GF P V++ ++++    K+   E   +
Sbjct: 160 NSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWS 219

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           + REM   G            + P   T NI I+GLC  G++ +   L   +E +     
Sbjct: 220 LFREMSDKG------------ICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPT 267

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+L+   CK G ++ A EL + + CK + ADV  YN+ I  L    +  K   LL 
Sbjct: 268 IVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLK 327

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            M +   + +  T+NTL+  F+++
Sbjct: 328 KMRKEMISPNEVTYNTLINGFVKE 351



 Score = 41.2 bits (95), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
             TF +L+  FC +  I +A +L   M   G + +V   + LI G+   G+     +L++E
Sbjct: 1005 ATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEE 1064

Query: 85   MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
            M +   D      PN+  Y  L+D +     + Q + L  +++++G+
Sbjct: 1065 MRHR--DLC----PNITTYAVLVDAISAANNLIQGEKLLTDLQERGL 1105


>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 426

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 182/383 (47%), Gaps = 43/383 (11%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A       ++  Y+P + VT  +L+KG C+   ++ A      +   G R +  +  TLI
Sbjct: 29  AFSVLAKILKIGYQP-DTVTLTTLLKGLCINNEVKKALHFHDDVIAKGFRLDNVSYGTLI 87

Query: 67  TGLRRTGNMNLTLKLHQEMV-------NGMGDFGGIY--------KPNVFCYGSLIDGLC 111
            GL ++G      +    M+         + D   +Y         P+V  Y +LI G C
Sbjct: 88  NGLCKSGETKAPDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFC 147

Query: 112 KDRLVDQTKD---LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNP 160
              +V Q +D   LF EM+ K I  N          LCK+  +     +L +M+++ + P
Sbjct: 148 ---IVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKP 204

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            + T + L++GY LV K N A  +F++MA+ G   D+ SY+++ING  K   V+EA+   
Sbjct: 205 DVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEAV--- 261

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                     +F EM+  ++ P+T T +  IDGL K G +  V +L   +  +     V 
Sbjct: 262 ---------ILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVI 312

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            ++SL+   CK G F+ A  +F K+  K    ++V YNIL+  L K G++K    +   +
Sbjct: 313 TYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDL 372

Query: 341 EENGCALDVDTFNTLMISFLQKE 363
              G  LDV  + T+MI+ L +E
Sbjct: 373 LIKGYRLDVRLY-TVMINGLCRE 394



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 152/320 (47%), Gaps = 45/320 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN-----LTL 79
           VT+N+LI GFC+ G + DA +L  +M      PNV + + LI GL + G++      L +
Sbjct: 137 VTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAV 196

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NAN 134
            + Q +           KP+V    SLIDG    +  ++ + +F  M   G+     + N
Sbjct: 197 MIKQSV-----------KPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYN 245

Query: 135 TLL--CKKTKLV-EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
            ++    K K+V EA  L + M  + + P   TY+ L++G   +G+++    L D M   
Sbjct: 246 IMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRAT 305

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G   +V +YS L+N  CK+ + + A+            +IF ++K     P   T NI +
Sbjct: 306 GRSANVITYSSLLNVLCKSGHFDTAI------------RIFTKIKDKGFEPNMVTYNILV 353

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           DGLCKNG + +  E+F  L I    L V ++  +I G C+  +F+ A        C    
Sbjct: 354 DGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTVMINGLCREALFDEA------YGC---T 404

Query: 312 ADVVAYNILIHALGKEGQIK 331
            + V Y I+I AL K  + K
Sbjct: 405 PNAVTYEIIIRALFKNDKNK 424



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 110/215 (51%), Gaps = 13/215 (6%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M  RG+   I   + L+N +  + ++N A ++   + + G+ PD  + + L+ G C N  
Sbjct: 1   MELRGIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNE 60

Query: 213 VEEAMNVSREMILNGFK-------KIFNEMKLCNV----VPETFTCNIFIDGLCKNGHVL 261
           V++A++   ++I  GF+        + N   LC       P+ F  ++ I+ LCK+  V+
Sbjct: 61  VKKALHFHDDVIAKGFRLDNVSYGTLIN--GLCKSGETKAPDQFMYSMIINRLCKDKLVV 118

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           +  +L+  + +      V  +N+LI G C  G  E A  LFN++  KN+V +V ++NILI
Sbjct: 119 DAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILI 178

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             L KEG +K    +L  M +     DV T ++L+
Sbjct: 179 DGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLI 213


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 163/357 (45%), Gaps = 32/357 (8%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           ++   RP +  +F+ +I G C  G +  A  L + M   GC+ NV   + LI  L  +  
Sbjct: 449 VKEMVRP-DTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNR 507

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG---- 130
           +     L +EM       G  ++P  F + S+   LC+   V    D+  EM+  G    
Sbjct: 508 LEECYLLLKEMK------GSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPW 561

Query: 131 INANTLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           I   TLL    CK+ +  EA   L  M++ G  P I  Y+  ++G+  +  V+ A+ +F 
Sbjct: 562 IKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFR 621

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            +  +G+ PDV +Y+ LING+CK   V EA ++  EM+  G            +VP   T
Sbjct: 622 DICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKG------------LVPSVVT 669

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N+ IDG CKNG + +       +     E  V  + +LI G C  G  + A  L+N++ 
Sbjct: 670 YNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMR 729

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT--FNTLMISFLQ 361
            K    + +++  LIH L K G     +  LL   E G     DT  +  L+ SF+ 
Sbjct: 730 GKGCSPNRISFIALIHGLCKCGW---PDAALLYFREMGERETPDTIVYVALITSFIS 783



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 139/319 (43%), Gaps = 30/319 (9%)

Query: 46  LVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS 105
           +VK+M     RP+ T+   +I GL  TG ++L L L ++MV  +G      K NV  Y +
Sbjct: 448 MVKEMV----RPDTTSFSIVIDGLCNTGKLDLALSLFRDMVR-VG-----CKQNVLLYNN 497

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRG 157
           LID L     +++   L  EMK  G              LC++  +  A  ++  M   G
Sbjct: 498 LIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHG 557

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
             P I  YT L+   C   +   A      M R+GF+PD+ +YS  I+G+ K   V++A+
Sbjct: 558 HEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQAL 617

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            + R++   G+             P+    N  I+G CK   V E  ++   +       
Sbjct: 618 EIFRDICARGY------------CPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVP 665

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  +N LI G CK G  + A    +++  K    +V+ Y  LI  L   G+     +L 
Sbjct: 666 SVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLW 725

Query: 338 LSMEENGCALDVDTFNTLM 356
             M   GC+ +  +F  L+
Sbjct: 726 NEMRGKGCSPNRISFIALI 744



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 161/420 (38%), Gaps = 96/420 (22%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN+ TF  LI GF  +  +  A QL KKM   G  P+V+  D LI GL     +   L L
Sbjct: 301 LNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHL 360

Query: 82  HQEMVN-GMG-DFGGIYKPNVFC-------------------------YGSLIDGLCKDR 114
             EM   G+  D   + K   +C                         Y S+++GL   +
Sbjct: 361 LSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGK 420

Query: 115 LVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
            VD+   L   M       N          E N+    M++  + P   +++ +++G C 
Sbjct: 421 SVDKAYYLLRAMTGDNYTDN---------FEVNKF--FMVKEMVRPDTTSFSIVIDGLCN 469

Query: 175 VGKVNVAIALFDSMAR-----------------------------------KGFMPDVFS 199
            GK+++A++LF  M R                                    GF P  F+
Sbjct: 470 TGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFT 529

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL--------------CN------ 239
           ++ +    C+  +V  A+++ REM ++G +       L              CN      
Sbjct: 530 HNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMV 589

Query: 240 ---VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
               +P+    +  IDG  K   V + +E+F  +        V  +N+LI G CK     
Sbjct: 590 REGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVS 649

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A ++ +++  K LV  VV YN+LI    K G I +  + L  M       +V T+ TL+
Sbjct: 650 EAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLI 709



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 92/221 (41%), Gaps = 35/221 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F     R Y P + V +N+LI GFC    + +A  ++ +M   G  P+V T + LI
Sbjct: 616 ALEIFRDICARGYCP-DVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 674

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G+++        MV      G   +PNV  Y +LIDGLC     D    L+ EM
Sbjct: 675 DGWCKNGDIDQAFHCLSRMV------GKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEM 728

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           + KG + N +                           ++  L++G C  G  + A+  F 
Sbjct: 729 RGKGCSPNRI---------------------------SFIALIHGLCKCGWPDAALLYFR 761

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
            M  +   PD   Y  LI  +  N N   A  + +EM+  G
Sbjct: 762 EMGERE-TPDTIVYVALITSFISNKNPTLAFEILKEMVAKG 801



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 139/325 (42%), Gaps = 43/325 (13%)

Query: 55  CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR 114
           C PN  + + L+  + ++G+++L     +EM     D G  ++P+ +   S++   C  R
Sbjct: 195 CVPNSYSFNCLLEAISKSGSIDLVEMRLKEMC----DSG--WEPDKYTLTSVLQAYCNSR 248

Query: 115 LVDQTKDLFMEMKDKG-INANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
             D+   +F E+  +G ++ + L        K  ++ +A  L+E M   G+     T+  
Sbjct: 249 KFDKALSVFNEIYGRGWVDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCV 308

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L++G+    +V+ A+ LF  M + GF PDV  Y  LI G C    +E+A++         
Sbjct: 309 LIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALH--------- 359

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
              + +EMK   + P+    +  I    +   +  ++E    LE  + E  + ++NS++ 
Sbjct: 360 ---LLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIE--ERLEDLDTEAMLLLYNSVLN 414

Query: 288 GCCKFGIFEIASELFNKLSCKNLV----------------ADVVAYNILIHALGKEGQIK 331
           G       + A  L   ++  N                   D  +++I+I  L   G++ 
Sbjct: 415 GLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLD 474

Query: 332 KENYLLLSMEENGCALDVDTFNTLM 356
               L   M   GC  +V  +N L+
Sbjct: 475 LALSLFRDMVRVGCKQNVLLYNNLI 499



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 128/322 (39%), Gaps = 38/322 (11%)

Query: 48  KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107
           +++  FG        + +++GL+       + K+     N   D GG +  N + Y ++ 
Sbjct: 84  QELRNFGSMLTHEVVENVLSGLK-------SWKIAYRFFNWASDQGG-FNHNCYTYNAMA 135

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINANTLLCK-----------KTKLVEANRLL--ELMM 154
             L   R       L M++    +N+   +              T LVE   LL  ++ M
Sbjct: 136 SCLSHARQNAPLSLLSMDI----VNSRCAMSPGALGFFIRCLGSTGLVEEANLLFDQVKM 191

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
            R   P  +++  LL      G +++       M   G+ PD ++ + ++  YC +   +
Sbjct: 192 MRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFD 251

Query: 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +A++V  E+   G+              +    +I +    K G V +  EL   +E   
Sbjct: 252 KALSVFNEIYGRGWV-------------DGHVLSILVLTFSKCGEVDKAFELIERMEDLG 298

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
             L  + F  LI G  +    + A +LF K+       DV  Y+ LI  L  + +I+K  
Sbjct: 299 IRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKAL 358

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
           +LL  M+E G   D+   + L+
Sbjct: 359 HLLSEMKELGIDPDIQILSKLI 380


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 179/360 (49%), Gaps = 30/360 (8%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           AL  FG  +R    P  DV ++N+LI GF  EG +  A +L  KM      P+V T ++L
Sbjct: 48  ALAVFGRLLRTGLGP--DVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSL 105

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I GL +T  M  + ++ ++MV+      GI +PN   Y SLI G     +  ++  +F E
Sbjct: 106 IDGLCKTKEMVKSERVLEQMVD-----AGI-RPNNKTYNSLIYGYSTAGMWKESVRVFKE 159

Query: 126 MKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M   G     +N N+    LC+  ++ EA  + + M+ +G  P I +Y+ LL+GY   G 
Sbjct: 160 MSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGC 219

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
                +L + M  KG +P+   +++LIN Y +   +++AM             IF +M+ 
Sbjct: 220 FANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAM------------LIFEDMQN 267

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
             ++P+T T    I  LC+ G + + +  F  +          ++  LI+GCC  G    
Sbjct: 268 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVK 327

Query: 298 ASELFNKLSCKNLVADVVAY-NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A EL +++  K++    V Y + +I+ L KEG++ +   ++  M + G   +V TFN+LM
Sbjct: 328 AKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLM 387



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 173/376 (46%), Gaps = 32/376 (8%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F S + +  +P N +++++L+ G+  EG   + + LV  M + G  PN    + LI    
Sbjct: 192 FDSMVLKGPKP-NIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYA 250

Query: 71  RTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
           R G M+  + + ++M N GM        P+   + ++I  LC+   +D     F  M D 
Sbjct: 251 RCGMMDKAMLIFEDMQNKGM-------IPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 303

Query: 130 GINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTY-TPLLNGYCLVGKVNV 180
           G+  +  +        C   +LV+A  L+  MM + + P    Y + ++N     G+V  
Sbjct: 304 GVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAE 363

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN---VSREMILN----------- 226
              + D M + G  P+V +++ L+ GYC   N+EEA++   +  ++ LN           
Sbjct: 364 GKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTT 423

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
             KK+F+EM          T  + + GLC+N    E   L   L   N +  +  FN +I
Sbjct: 424 AAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVI 483

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
               K G  + A ELF  +S   LV  V  YN++I  L KE   ++ + L +S+E++G A
Sbjct: 484 SAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRA 543

Query: 347 LDVDTFNTLMISFLQK 362
            D    N ++   L+K
Sbjct: 544 PDSRLLNHIVRMLLKK 559



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 23/230 (10%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           +++ GL P + +Y  L++G+   G+V+ A  LF  M  +   PDV +Y+ LI+G CK   
Sbjct: 55  LLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKE 114

Query: 213 VEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFTCNI 249
           + ++  V  +M+  G +                       ++F EM    ++P    CN 
Sbjct: 115 MVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNS 174

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           FI  LC++  + E  ++F ++ +   +  +  +++L+ G    G F   + L N +  K 
Sbjct: 175 FIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKG 234

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +V +   +NILI+A  + G + K   +   M+  G   D  TF T++ S 
Sbjct: 235 IVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 284



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 12/180 (6%)

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
           +A+A+F  + R G  PDV SY+ LI+G+ K   V++A             ++F +M   +
Sbjct: 47  LALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAY------------ELFYKMIEQS 94

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           V P+  T N  IDGLCK   +++   +   +  +      + +NSLI G    G+++ + 
Sbjct: 95  VSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESV 154

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +F ++S   L+  VV  N  IHAL +  +IK+   +  SM   G   ++ +++TL+  +
Sbjct: 155 RVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGY 214



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 32/222 (14%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK----LH 82
           F+S+I     EG + +   ++  M   G RPNV T ++L+ G    GNM   L      H
Sbjct: 348 FSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWH 407

Query: 83  Q------------------EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF- 123
           Q                  +M + M + G     ++  YG ++ GLC++   D+   L  
Sbjct: 408 QLALNRIVTYMARRTTAAKKMFHEMIESGTTV--SIQTYGVVLGGLCRNNCTDEANMLLE 465

Query: 124 ----MEMKDKGINANTLLCKKTKL---VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
               M +K   I  N ++    K+    EA  L   +   GL P + TY  +++      
Sbjct: 466 KLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEE 525

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
               A  LF S+ + G  PD    + ++    K   V +A N
Sbjct: 526 SYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASN 567



 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           E+A  +F +L    L  DV +YN LI    KEG++ K   L   M E   + DV T+N+L
Sbjct: 46  ELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSL 105

Query: 356 M 356
           +
Sbjct: 106 I 106


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 154/338 (45%), Gaps = 45/338 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC +G+IR A  +   +  +G RP+V + 
Sbjct: 117 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 176

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M+           P+V+ Y  LI+GLCK+         
Sbjct: 177 NTLMNGYIRLGDLDEGFRLKSAML------ASGXXPDVYTYSVLINGLCKE--------- 221

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+  AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 222 ------------------SKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAM 263

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +  +PD+ +Y+ LI G CK  ++++A ++  EM   G K            P
Sbjct: 264 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLK------------P 311

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           + FT    IDG CK G +         +   N  L    + +LI G C+ G    A ++ 
Sbjct: 312 DKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKML 371

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            ++    L  D   Y ++I+   K+G + K + LL  M
Sbjct: 372 REMLSVGLXPDAGTYTMIINEFCKKGDVWKGSKLLKEM 409



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 71  FSGLITAYLESGFLRDAIECYRLTXEHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 130

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---C 138
                    Y  +++ +  L+   CKD  +   + +F  +   G     ++ NTL+    
Sbjct: 131 ECG------YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 184

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M+  G  P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 185 RLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXV 244

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              +++P+  T N  I GLCK G
Sbjct: 245 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLLPDLITYNTLIYGLCKKG 292

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   +     +     + +LI GCCK G  + A     ++  +N+  D VAY 
Sbjct: 293 DLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYT 352

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 353 ALISGLCQEGRSVDAEKMLREMLSVGLXPDAGTYTMIINEFCKK 396


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 172/368 (46%), Gaps = 42/368 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+K  C    +  A +L+ +M++ GC P+  +  TLI+ L + G +    +L 
Sbjct: 180 NVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELA 239

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
                        + P+V  Y +LI+G+CK+   ++   L  EM +KGI+ N +      
Sbjct: 240 MS-----------FTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTII 288

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L     +  +  +L  M  RG +P + T+T L+ G+ L G  + A+  +D M R+G +
Sbjct: 289 NALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVV 348

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKKI 231
           P+V +Y+ L++G C   ++ +A++V  +M +NG                         ++
Sbjct: 349 PNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEV 408

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           +N M      P        +D LC+N    +   L   +++ NC      FN+ I+G C 
Sbjct: 409 WNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCG 468

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  + A ++F+++       +   YN L+ +L K+ +  +   L+  ME  G  L++ T
Sbjct: 469 SGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVT 528

Query: 352 FNTLMISF 359
           +NT++  +
Sbjct: 529 YNTIIYGY 536



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 155/352 (44%), Gaps = 30/352 (8%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           F R C   L+  TF SLIKGF ++G   +A     +M   G  PNV   + L+ GL    
Sbjct: 308 FARGCSPNLH--TFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKR 365

Query: 74  NMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
           ++   + +  +M +NG         PNV  Y +LIDG  K   +D   +++  M   G +
Sbjct: 366 SLGDAVSVFNQMEINGCC-------PNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCH 418

Query: 133 ANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            N +        LC+ +   +A  L+E M      P   T+   + G C  G+V+ AI +
Sbjct: 419 PNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKV 478

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
           FD M   G  P+  +Y+ L++   K+    EA  + ++M   G      E+ L       
Sbjct: 479 FDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGI-----ELNL------- 526

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T N  I G C  G + E +EL   + +   +      N +I   CK G   IA +L ++
Sbjct: 527 VTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDR 586

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           LS      D++AY  LI  +     +++    L  M   G + +V T+N L+
Sbjct: 587 LSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLV 638



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 146/337 (43%), Gaps = 31/337 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  +   IR    P N V +N+L+ G C + ++ DA  +  +M   GC PNV T   LI
Sbjct: 335 ALDFWDRMIREGVVP-NVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALI 393

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G+++       E+ N M   G    PNV  Y  ++D LC++ + +Q   L   M
Sbjct: 394 DGYAKAGDLDGA----SEVWNWMITHGC--HPNVVAYTCMVDVLCRNSMFNQAYCLIENM 447

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           + +    NT+        LC   ++  A ++ + M   G  P   TY  LL+      + 
Sbjct: 448 QVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRF 507

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A  L   M  +G   ++ +Y+ +I GYC    + EA+ +  +M++ G K         
Sbjct: 508 GEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTK--------- 558

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P+  T NI ID  CK G V   ++L   L        +  + SLI G C     E A
Sbjct: 559 ---PDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEA 615

Query: 299 SELFNKLSCKNLVADVVAYNILIHAL----GKEGQIK 331
                ++  + +  +V  +N+L+  L    G  G ++
Sbjct: 616 IVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQ 652



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 117/263 (44%), Gaps = 28/263 (10%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GA   +   I     P N V +  ++   C       A  L++ M    C PN  T +T 
Sbjct: 404 GASEVWNWMITHGCHP-NVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTF 462

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I GL  +G ++  +K+  +M N  G F     PN   Y  L+D L KDR   +   L  +
Sbjct: 463 IKGLCGSGRVDWAIKVFDQMGNS-GCF-----PNTTTYNELLDSLLKDRRFGEAFGLVKD 516

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M+ +GI  N +         C    L EA  LL  M+ RG  P   T   +++ YC  GK
Sbjct: 517 MEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGK 576

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           VN+AI L D ++   + PD+ +Y+ LI+G C +  VEEA+   R M+  G          
Sbjct: 577 VNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEG---------- 626

Query: 238 CNVVPETFTCNIFIDGLCKN-GH 259
             + P   T N+ +  L  N GH
Sbjct: 627 --ISPNVATWNVLVRHLFSNMGH 647



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 134/302 (44%), Gaps = 30/302 (9%)

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L+   ++ L L+  + + N        +K     Y  +I+ L  +R +D  + L  +MK 
Sbjct: 50  LKHEHDITLALEYFKSIANSKS-----FKHTPLTYQMMIEKLASEREMDCVQYLLQQMKL 104

Query: 129 KGINANTLLC--------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI+ +  L         +     +A +    M    + P +  Y  +L+      +  +
Sbjct: 105 EGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQM 164

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
              ++ +M + G  P+VF+Y++L+   CKN  V+            G  K+  EM     
Sbjct: 165 INPIYSNMKKDGMEPNVFTYNILLKALCKNNRVD------------GAHKLLVEMSSKGC 212

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  +    I  LCK G V E  EL  +   S     V ++N+LI G CK   FE A +
Sbjct: 213 DPDEVSYTTLISSLCKLGKVKEARELAMSFTPS-----VPVYNALINGVCKEYTFEEAFQ 267

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           L +++  K +  +V++Y  +I+AL   G ++    +L  M   GC+ ++ TF +L+  F 
Sbjct: 268 LLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFF 327

Query: 361 QK 362
            K
Sbjct: 328 LK 329


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 152/316 (48%), Gaps = 29/316 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN VT+ +L+ G C EG +++A ++ + M   G  PN  T   L+ G  +   M     +
Sbjct: 428 LNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDI 487

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--- 138
            +EM           KP++  YG+++ GLC +  +++ K L  E+K+ GIN N ++    
Sbjct: 488 LKEMKEK------CIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTL 541

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  +  EA  LLE M+  GL     TY  L++G C  G V  A+  F  M+  G 
Sbjct: 542 MDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGL 601

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V  Y+ L++G CKN   E A            KK+F+EM    ++P+       IDG
Sbjct: 602 QPNVAVYTALVDGLCKNNCFEVA------------KKLFDEMLDKGMMPDKIAYTALIDG 649

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             K+G++ E + L   +     EL +  + +LI G    G  + A  L +++  K ++ D
Sbjct: 650 NMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPD 709

Query: 314 VVAYNILI---HALGK 326
            V Y  LI   +ALGK
Sbjct: 710 EVVYMCLIKKYYALGK 725



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 165/342 (48%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+++ I  FC EG +++A +    M      PN  T  +LI    + GN+   LKL 
Sbjct: 359 NVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLV 418

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLLC 138
           +E++       GI K NV  Y +L+DGLC++  + + +++F  M + G+  N    T L 
Sbjct: 419 EEILQ-----AGI-KLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALV 472

Query: 139 ----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K  ++  A  +L+ M ++ + P +  Y  +L G C   ++  A  L   +   G  
Sbjct: 473 HGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGIN 532

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +   Y+ L++ Y K+    EA+ +  EM+  G   I  E+  C +          IDGL
Sbjct: 533 TNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGL--IATEVTYCAL----------IDGL 580

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK+G V E M  F  +     +  V ++ +L+ G CK   FE+A +LF+++  K ++ D 
Sbjct: 581 CKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDK 640

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +AY  LI    K G +++   L   M E G  LD+  +  L+
Sbjct: 641 IAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALI 682



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 170/373 (45%), Gaps = 49/373 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            F++L       G + +AS+   KM  F   P   +C+ L+  L + G  +L+ K  ++M
Sbjct: 187 VFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDM 246

Query: 86  -----------VNGMGDF----GGI--------------YKPNVFCYGSLIDGLCKDRLV 116
                       N M D+    G +              + P++  Y SLIDG  K  L+
Sbjct: 247 GAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLL 306

Query: 117 DQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           D+   +F +MKD       I  N L+   CK  ++ +A   L  M   GL P + TY+  
Sbjct: 307 DECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTF 366

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           ++ +C  G +  AI  F  M R    P+ F+Y+ LI+  CK  N+ EA+ +  E++  G 
Sbjct: 367 IDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGI 426

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           K         NVV  T+T    +DGLC+ G + E  E+F  +  +      E + +L+ G
Sbjct: 427 K--------LNVV--TYTA--LLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHG 474

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K    E A ++  ++  K +  D++ Y  ++  L  E ++++   L+  ++E+G   +
Sbjct: 475 FIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTN 534

Query: 349 VDTFNTLMISFLQ 361
              + TLM ++ +
Sbjct: 535 AVIYTTLMDAYFK 547



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 99/214 (46%), Gaps = 16/214 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + +L+  +   G   +A  L+++M   G      T   LI GL ++G       L 
Sbjct: 534 NAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSG-------LV 586

Query: 83  QEMVNGMGDFGGI-YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL---- 137
           QE ++  G    I  +PNV  Y +L+DGLCK+   +  K LF EM DKG+  + +     
Sbjct: 587 QEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTAL 646

Query: 138 ----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K   L EA  L + M++ G+   +  YT L+ G    G+V  A  L D M  KG 
Sbjct: 647 IDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGV 706

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +PD   Y  LI  Y     V+EA+ +  EM   G
Sbjct: 707 LPDEVVYMCLIKKYYALGKVDEALELQNEMAKRG 740



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 15/219 (6%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           +C +P + + + +++ G C E  + +A  L+ ++   G   N     TL+    ++G   
Sbjct: 494 KCIKP-DLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQAT 552

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
             L L +EM+    D G I     +C  +LIDGLCK  LV +    F  M + G+  N  
Sbjct: 553 EALTLLEEML----DLGLIATEVTYC--ALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVA 606

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LCK      A +L + M+ +G+ P    YT L++G    G +  A+ L D M
Sbjct: 607 VYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRM 666

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
              G   D+ +Y+ LI G   +  V++A N+  EMI  G
Sbjct: 667 IEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKG 705



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            +VT+ +LI G C  G +++A     +M+  G +PNV     L+ GL +     +  KL 
Sbjct: 569 TEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLF 628

Query: 83  QEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKD-------RLVDQTKDLFMEMKDKGINAN 134
            EM++ GM        P+   Y +LIDG  K         L D+  ++ ME+      A 
Sbjct: 629 DEMLDKGM-------MPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTAL 681

Query: 135 TL-LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L    ++ +A  LL+ M+ +G+ P    Y  L+  Y  +GKV+ A+ L + MA++G 
Sbjct: 682 IWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 741

Query: 194 MPDVFSYSV 202
           +  +  ++V
Sbjct: 742 ITGLSDHAV 750



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%)

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F +M+   V P+  +CN  +  L K G      + F  +  +  +  V  +N +I   CK
Sbjct: 208 FLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCK 267

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E+A  LF ++       D+V YN LI   GK G + +   +   M++  C  DV T
Sbjct: 268 EGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVIT 327

Query: 352 FNTLMISFLQKE 363
           +N L+  F + E
Sbjct: 328 YNALINCFCKFE 339


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 161/356 (45%), Gaps = 37/356 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +L+ GFC      D   L+ +M   G  P       L+ GLR+ GN++       +
Sbjct: 289 VTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAY----D 344

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +V  +G FG  + PN+F Y +LI+ LCK   +D+ + L+  M    +  N +        
Sbjct: 345 LVVKLGRFG--FLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDS 402

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+  L  A      M++ G+   I+ Y  L+NG+C  G ++ A  L+  M  +G  P 
Sbjct: 403 FCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPT 462

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFN 233
             +++ LI+GYCK+  VE+A  + REM              ++ G           K+F+
Sbjct: 463 ATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFD 522

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM    + P   T N+ I+G CK  ++ +  EL   +  +        +  LI G C  G
Sbjct: 523 EMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTG 582

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
               A +  + L  KNL  + + Y+ L+H    +G++ +       M + G  +D+
Sbjct: 583 RVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDL 638



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 159/364 (43%), Gaps = 38/364 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +NSLI G C  G++  A  L  KM   G  P  TT  TLI+G  +   +    KL++EM 
Sbjct: 431 YNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMN 490

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
                      P+V+ + +LI GLC    + +   LF EM ++ I    +         C
Sbjct: 491 EKE------IAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYC 544

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   + +A  LLE M+  GL P  +TY PL++G C  G+V+ A    D + +K    +  
Sbjct: 545 KAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEM 604

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGF--------------------KKIFNEMKLC 238
            YS L++GYC    + EA++ S EMI  G                     K++F  +K  
Sbjct: 605 CYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKM 664

Query: 239 ---NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
               + P++      ID   K G   +  E    +    C   V  + + + G CK G  
Sbjct: 665 YDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEI 724

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + A  LF K+   N+  + V Y   + +L KEG +K+   L   M + G   +  T+N L
Sbjct: 725 DRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GLLANTATYNIL 783

Query: 356 MISF 359
           +  F
Sbjct: 784 IRGF 787



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 140/292 (47%), Gaps = 25/292 (8%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP + V + S+I  +  EG+ + + + +  M T  C PNV T    + GL + G ++   
Sbjct: 670 RP-DSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAG 728

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
            L ++M+           PN   YG  +D L K+  + +  DL  EM  KG+ ANT    
Sbjct: 729 HLFEKMLTAN------ISPNSVTYGCFLDSLTKEGNMKEATDLHHEML-KGLLANTATYN 781

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                 CK  +L+EA ++L  M + G+ P   TY+ ++  +C  G V  A+ L+D+M RK
Sbjct: 782 ILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRK 841

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--KIFNEMKLCNVVPETFTCNI 249
           G  PD  ++++LI G C N  +++A  +  +M+  G K  +I    K      +   CN 
Sbjct: 842 GVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQK-----RDLGVCNF 896

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
            + G C  G V   + L+ ++     +L +E++  L      +G+   + EL
Sbjct: 897 LMHGGCVTGEVDTALRLYHSMLTRAVKLSLEMWKCLY--LLSYGVISKSEEL 946



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 179/425 (42%), Gaps = 69/425 (16%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T+++  A   F   + R  +P  +VT+N +I+G+C   N+  A +L++ M   G  P+  
Sbjct: 511 TNEMAEASKLFDEMVERKIKP-TEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTY 569

Query: 61  TCDTLITGLRRTG---------------NMNLTLKLHQEMVNGMGDFGGIYKP------- 98
           T   LI+GL  TG               N+ L    +  +++G    G + +        
Sbjct: 570 TYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEM 629

Query: 99  -------NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKL 143
                  ++ C+  LIDG  K + + +   L  +M D+G+  ++++         K+   
Sbjct: 630 IQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSF 689

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            ++   L+LM+     P + TYT  +NG C VG+++ A  LF+ M      P+  +Y   
Sbjct: 690 KKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCF 749

Query: 204 INGYCKNFNVEEAMNVSREMI-------------LNGF---------KKIFNEMKLCNVV 241
           ++   K  N++EA ++  EM+             + GF          K+ +EM    + 
Sbjct: 750 LDSLTKEGNMKEATDLHHEMLKGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIF 809

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+  T +  I   C++G V   +EL+ T+     E     FN LI GCC  G  + A EL
Sbjct: 810 PDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFEL 869

Query: 302 FNKLSCKNLVA---------DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
            N +  + L           D+   N L+H     G++     L  SM      L ++ +
Sbjct: 870 RNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGCVTGEVDTALRLYHSMLTRAVKLSLEMW 929

Query: 353 NTLMI 357
             L +
Sbjct: 930 KCLYL 934



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 148/341 (43%), Gaps = 26/341 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ L+  +     + DA  +++ M      P V T   ++ GL R     L  ++  E V
Sbjct: 151 FDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESV 210

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLC--KDRLVDQTKDLFMEMKDKGINANTL------LC 138
           N      G+ KP+ +   ++I  LC  KD    + K L+ME     ++  T       LC
Sbjct: 211 NA-----GV-KPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLC 264

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   ++EA  + + + ++GL   + TY  L+ G+C V + +  I L + M   GF+P   
Sbjct: 265 KGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEA 324

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           + S L++G  K  N++ A ++  ++   GF            +P  F  N  I+ LCK  
Sbjct: 325 AVSGLVDGLRKKGNIDSAYDLVVKLGRFGF------------LPNLFVYNALINALCKGE 372

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +   L+  +   N  L    ++ LI   CK G+ ++A   F ++    +   +  YN
Sbjct: 373 DLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYN 432

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            LI+   K G +    +L   M   G      TF TL+  +
Sbjct: 433 SLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGY 473



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 12/225 (5%)

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           + T++ +A  +L LM+   L P + T + +LNG   + K  +   +FD     G  PD +
Sbjct: 160 QNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKPDPY 219

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           + S +I   C+  +   A    +E IL      F+     ++V    T N+ I GLCK G
Sbjct: 220 TCSAVIRSLCELKDFCRA----KEKILWMESNRFD----LSIV----TYNVLIHGLCKGG 267

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            VLE +E+  +L     +  V  + +L+ G C+   F+    L N++     V    A +
Sbjct: 268 GVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVS 327

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            L+  L K+G I     L++ +   G   ++  +N L+ +  + E
Sbjct: 328 GLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGE 372


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 150/329 (45%), Gaps = 49/329 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +LI  +     +  A+ +  +M   GCRPN  T   L+ GL + GN++   +++ +
Sbjct: 359 VTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAK 418

Query: 85  MV----NGMGDF------GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++    +   DF           PNV  YG+L+DGLCK   VD                 
Sbjct: 419 LIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH---------------- 462

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
                      A+ LL+ M+  G  P    Y  L++G+C  GK++ A  +F  M + G++
Sbjct: 463 -----------AHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYL 511

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P V +Y+ LI+   K+  ++ AM V  +M+ +            +  P   T    IDGL
Sbjct: 512 PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKD------------SCTPNVVTYTAMIDGL 559

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G   + ++L   +E   C   V  + +LI G  K G  +++ +LF ++S K    + 
Sbjct: 560 CRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 619

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEEN 343
           V Y +LI+ L   G + K   LL  M++ 
Sbjct: 620 VTYRVLINHLCAAGLLDKARLLLGEMKQT 648



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 146/331 (44%), Gaps = 29/331 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  LI  FC  G I  A  L ++M + GC P V T   LI    +   +     +   M
Sbjct: 325 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 384

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           V+         +PN   YG+L+DGLCK   + +  +++ ++     +A++          
Sbjct: 385 VDAGC------RPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADS---------- 428

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
            +       +  L P + TY  L++G C   KV+ A  L D+M   G  P+   Y  LI+
Sbjct: 429 -DFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALID 487

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G+CK   ++ A            +++F +M  C  +P   T    ID + K+G +   M+
Sbjct: 488 GFCKAGKIDSA------------QEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 535

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +   +   +C   V  + ++I G C+ G  E A +L + +  K    +VV Y  LI  LG
Sbjct: 536 VLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLG 595

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K G+I     L   M   GC+ +  T+  L+
Sbjct: 596 KAGKIDLSLDLFTQMSRKGCSPNYVTYRVLI 626



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 155/333 (46%), Gaps = 37/333 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+ G C    +  A +L+  M + GC PN    D LI G  + G ++      
Sbjct: 443 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA---- 498

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QE+   M   G  Y P+V  Y SLID + KD  +D    +  +M       N +      
Sbjct: 499 QEVFLQMTKCG--YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMI 556

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +  +A +LL LM ++G +P + TYT L++G    GK+++++ LF  M+RKG  
Sbjct: 557 DGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCS 616

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK-------IFN 233
           P+  +Y VLIN  C    +++A  +  EM               + GF K       I  
Sbjct: 617 PNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILE 676

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT-LEI-SNCELFVEIFNSLIRGCCK 291
           EM+    VP      + ID   K G +   MEL    +E+ S+ +   +++ SLI+  C 
Sbjct: 677 EMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCL 736

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
               E A  L+++++ +  V ++  +  LI  L
Sbjct: 737 ASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGL 769



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 161/387 (41%), Gaps = 59/387 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+ GF  +  +    +++  M T GC PN +  ++L+       +     KL 
Sbjct: 141 NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL- 199

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR------LVDQTKDLFMEM--------KD 128
              +N M   G    P    Y   I  +C         L+D  + ++ EM        K 
Sbjct: 200 ---LNRMTTCGC--PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKV 254

Query: 129 KGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
              N    LC   K  +A +L++ MM++G  P   TY+ ++   C   KV  A  LF  M
Sbjct: 255 NVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEM 314

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---- 230
              G  PDV++Y++LI+ +CK   +E+A  +  EM              +++ + K    
Sbjct: 315 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQV 374

Query: 231 -----IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL----EISNCELF--- 278
                IF+ M      P   T    +DGLCK G++ +  E++  L    + ++ + +   
Sbjct: 375 PQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPC 434

Query: 279 ---------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
                    V  + +L+ G CK    + A EL + +       + + Y+ LI    K G+
Sbjct: 435 EDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGK 494

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           I     + L M + G    V T+ +L+
Sbjct: 495 IDSAQEVFLQMTKCGYLPSVHTYTSLI 521



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 132/367 (35%), Gaps = 63/367 (17%)

Query: 53  FGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG--------MGDFGGI--------- 95
           FG RP+  T + L+  L   G ++L  ++ +EM           +G F            
Sbjct: 34  FGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWAD 93

Query: 96  ---------YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-----DKGINANTLLC--- 138
                    +K +      +I GL +    D+       M+        +   TLL    
Sbjct: 94  ALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFL 153

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           KK +L    R++ +MM  G NP    +  L++ YC       A  L + M   G  P   
Sbjct: 154 KKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYV 213

Query: 199 SYSVLINGYCKNFNVEE------AMNVSREMI--------------------LNGFKKIF 232
            Y++ I   C    +        A  +  EM+                    +  F K F
Sbjct: 214 VYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAF 273

Query: 233 N---EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
               EM     VP+T T +  I  LC    V +   LF  +++      V  +  LI   
Sbjct: 274 QLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSF 333

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G+ E A  LF ++        VV Y  LIHA  K  Q+ + N +   M + GC  + 
Sbjct: 334 CKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPND 393

Query: 350 DTFNTLM 356
            T+  L+
Sbjct: 394 VTYGALV 400



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 94/241 (39%), Gaps = 51/241 (21%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ ++I G C  G    A +L+  M   GC PNV T   LI GL + G ++L+L L 
Sbjct: 548 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 607

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-------KGINANT 135
            +M            PN   Y  LI+ LC   L+D+ + L  EMK        +G     
Sbjct: 608 TQMSRKGC------SPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAI 661

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTY------------------------------ 165
               K+  + +  +LE M   G  P+   Y                              
Sbjct: 662 QGFSKS-FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSV 720

Query: 166 -------TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
                    L+   CL  +V  A  L+  M R+GF+P++  +  LI G  +    +EA+ 
Sbjct: 721 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQ 780

Query: 219 V 219
           +
Sbjct: 781 L 781



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 15/174 (8%)

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           D +   G+ P   +Y+ L+        V+    V +EM  +GF              + F
Sbjct: 29  DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGF------------CMDRF 76

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T   F   LCK G   + +++   +E  + +L   +   +I G  +   F+ A    +++
Sbjct: 77  TVGCFAHALCKEGRWADALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRM 133

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            C + + +VV Y  L+    K+ Q+     ++  M   GC  +   FN+L+ S+
Sbjct: 134 RCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSY 187



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 17/208 (8%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G  P   TY  L+      G+V++   +   M+  GF  D F+     +  CK     +A
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 94

Query: 217 MN-VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           ++ + RE           + KL     +T  C   I GL +  +  E M     +  ++C
Sbjct: 95  LDMIERE-----------DFKL-----DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSC 138

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              V  + +L+ G  K         + N +  +    +   +N L+H+   E        
Sbjct: 139 IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYK 198

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQKE 363
           LL  M   GC      +N  + S   +E
Sbjct: 199 LLNRMTTCGCPPGYVVYNIFIGSICGQE 226


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 172/392 (43%), Gaps = 60/392 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+++  +C EG +  A +L+ +M   GC PN  T + L+ GL + G +     L +E
Sbjct: 216 VTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEE 275

Query: 85  MVN-GMGDFGGIYKP--NVFC--------------------------YGSLIDGLCKDRL 115
           M+N G+      Y P  N FC                          Y +L+ GLCK   
Sbjct: 276 MLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQ 335

Query: 116 VDQTKDLFMEM-KDKG----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           V   +  F +M K K     ++ N+LL   C+   + EA  L + +  R L P + TY  
Sbjct: 336 VTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNT 395

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L++G C+ G ++ A+ L   M  +G  PD+F+Y++L+NG  K   V  A     EM+  G
Sbjct: 396 LIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKG 455

Query: 228 FK--------KIFNEMKLCNVV---------------PETFTCNIFIDGLCKNGHVLEVM 264
            K        +I  EMK+ +                 P+  T N+F+  LC+ G+  E  
Sbjct: 456 LKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEAC 515

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           +L   +           + S+I G  K G    A E+FN++  K +   VV Y +LIHA 
Sbjct: 516 DLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAH 575

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             +  +         M E     +V T+N ++
Sbjct: 576 AAKQMLDLAFMYFSKMLEKSVPANVITYNAII 607



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 169/371 (45%), Gaps = 43/371 (11%)

Query: 8   LMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           L+ F   IR    P  DV   N +++    E  +  A  +   M  FG +P V T +T++
Sbjct: 165 LLVFDKMIRNGLLP--DVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTML 222

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
               + G ++  L+L  EM        G Y PN   Y  L++GL K   ++Q K L  EM
Sbjct: 223 DSYCKEGRVDQALELLSEMQE-----RGCY-PNDVTYNVLVNGLSKKGELEQAKGLIEEM 276

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            + G+N +           C+K   VEA  L+E M+ R   P + TY  L+ G C   +V
Sbjct: 277 LNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQV 336

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
                 F  M +  F PD+ S++ L+ GYC+   + EA              +F+E+K  
Sbjct: 337 TGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAF------------LLFDELKCR 384

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS--LIRGCCKFGIFE 296
           ++VP   T N  I GLC  G++   + L    E+++  LF +IF    L+ GC K G   
Sbjct: 385 DLVPTVITYNTLIHGLCMWGYLDAALRL--KKEMTDQGLFPDIFTYTILVNGCFKLGYVS 442

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIK-KENYLLLSMEEN----GCALDVDT 351
           +A   FN++  K L  D  AYN  I      G++K  +  +  SM+E     G   DV T
Sbjct: 443 MARGFFNEMLSKGLKPDRFAYNTRI-----VGEMKIADTSVAFSMQEEMLAAGFPPDVIT 497

Query: 352 FNTLMISFLQK 362
           +N  + +  Q+
Sbjct: 498 YNVFVHALCQQ 508



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 151/327 (46%), Gaps = 27/327 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V G  + F   ++  + P + V+FNSL+ G+C  G I +A  L  ++      P V T 
Sbjct: 335 QVTGVRLRFSDMLKSKFTP-DIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITY 393

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TLI GL   G ++  L+L +EM +      G++ P++F Y  L++G  K   V   +  
Sbjct: 394 NTLIHGLCMWGYLDAALRLKKEMTDQ-----GLF-PDIFTYTILVNGCFKLGYVSMARGF 447

Query: 123 FMEMKDKGINA-----NTLLCKKTKLVE---ANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EM  KG+       NT +  + K+ +   A  + E M+  G  P + TY   ++  C 
Sbjct: 448 FNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQ 507

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G    A  L ++M   G +PD  +Y+ +ING+ KN ++ +A            +++FNE
Sbjct: 508 QGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKA------------REVFNE 555

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    V P   T  + I        +      F  +   +    V  +N++I G C    
Sbjct: 556 MLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRR 615

Query: 295 FEIASELFNKLSCKNLVADVVAYNILI 321
            + A + F+++  K ++ +  +Y ILI
Sbjct: 616 MDEAYKYFDEMEEKGILPNKFSYTILI 642



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 45/243 (18%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + +T+N  +   C +GN  +A  L++ M + G  P+  T  ++I G  + G++    +
Sbjct: 492 PPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKARE 551

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           +  EM++      G+  P+V  Y  LI      +++D     F +M +K + AN      
Sbjct: 552 VFNEMLSK-----GV-APSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPAN------ 599

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                                + TY  ++NG C+  +++ A   FD M  KG +P+ FSY
Sbjct: 600 ---------------------VITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSY 638

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           ++LIN  C     EEA+ + REM+               + P++FT ++F+  L ++  V
Sbjct: 639 TILINESCNMGYWEEALRLYREMLDR------------KIQPDSFTHSVFLKNLHRDYQV 686

Query: 261 LEV 263
             V
Sbjct: 687 HAV 689



 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A M F   + +   P N +T+N++I G CM   + +A +   +M   G  PN  +   LI
Sbjct: 584 AFMYFSKMLEKSV-PANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILI 642

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
                 G     L+L++EM++         +P+ F +   +  L +D  V   +
Sbjct: 643 NESCNMGYWEEALRLYREMLDRK------IQPDSFTHSVFLKNLHRDYQVHAVQ 690


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ T+ SLI G C  G +  A +L+ +M   G  P V   + +I GL + G     L   
Sbjct: 29  NEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYF 88

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTL 136
           + +       G    P++  +  L+D L K   V++   +F  M          +   T+
Sbjct: 89  KTVA------GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTV 142

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  KL  A  LL+LM + G  P + TY+ L+ G C  G+ +    L   M R+GF
Sbjct: 143 INGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGF 202

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PDV  Y+ L+NG CK+  ++EA+ + + MI +G              P   T N  ++ 
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG------------CYPTVVTYNSLMEL 250

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C++  V     L   +    C   V  +N++I G C+    + A  L  ++     V D
Sbjct: 251 FCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPD 310

Query: 314 VVAYNILIHALGKEGQIKKENYL------LLSMEENGCALDVDTFNTLM 356
           V+ Y+ +I  L K+ ++  +  L      L  M++ GC  +  T+  ++
Sbjct: 311 VITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVI 359



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 174/413 (42%), Gaps = 79/413 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ ++I G C +G +  A +L+  M   GC PNV T   L+ GL + G  +    L 
Sbjct: 135 NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLL 194

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           QEM          ++P+V  Y +L++GLCK R +D+  +L   M   G     +  N+L+
Sbjct: 195 QEMTRRG------FQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLM 248

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+  ++  A RL+++M +RG  P +  Y  ++ G C   +++ A AL   M     +
Sbjct: 249 ELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV 308

Query: 195 PDVFSYSVLINGYCKNFNV----------------------------------------- 213
           PDV +YS +I+G CK++ V                                         
Sbjct: 309 PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKS 368

Query: 214 EEAMNVSREMI-----------------------LNGFKKIFNEMKLCNVVPETFTCNIF 250
           ++A+ + R MI                       L+   KIF  M      P        
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAAL 428

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           IDGL K G V + + +F  L + +    V  +NS++ G C  G  E A  +   +  K  
Sbjct: 429 IDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKEC 487

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             D  +Y  LI  L +   +++   L  ++E  G A++V  +N L+    +K+
Sbjct: 488 FPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKK 540



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 158/349 (45%), Gaps = 51/349 (14%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           CY  +  VT+NSL++ FC    +  A +L++ M+  GC P+V   +T+I GL R   ++ 
Sbjct: 237 CYPTV--VTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDD 294

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137
              L ++MV           P+V  Y ++IDGLCKD  VD                    
Sbjct: 295 AQALLKQMVAAR------CVPDVITYSTIIDGLCKDWRVD-------------------- 328

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
               KL  A  +LE+M Q G  P   TY  ++ G C   K   A+AL   M     +PD+
Sbjct: 329 -ADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDL 387

Query: 198 FSYSVLINGYCKNFNVEEAMN--------------VSREMILNGFKK---IFNEMKLCNV 240
            S+S++I   CK+ +++ A                V+   +++G  K   +   +++  +
Sbjct: 388 SSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFEL 447

Query: 241 VPETF-----TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           + E+F     T N  +DGLC  G + E + +   +    C      + +LIRG C+    
Sbjct: 448 MVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCV 507

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           E A ELF  +  K    +V  YN+L++ L K+ ++   + +   + E G
Sbjct: 508 EEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 135/303 (44%), Gaps = 56/303 (18%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEA--- 146
           PN F YGSLI GLCK   +DQ  +L  EM+D+GI             LCK  +  +A   
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGY 87

Query: 147 ----------------NRLLELMMQRGLN-----------------PVIFTYTPLLNGYC 173
                           N L++ +++ G                   P + TYT ++NG C
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             GK++ AI L D M   G  P+V +YSVL+ G CK    ++   + +EM   GF+    
Sbjct: 148 KDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQ---- 203

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+    N  ++GLCK+  + E +EL   +  S C   V  +NSL+   C+  
Sbjct: 204 --------PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSK 255

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A  L   +S +    DV+ YN +I  L ++ ++     LL  M    C  DV T++
Sbjct: 256 QVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYS 315

Query: 354 TLM 356
           T++
Sbjct: 316 TII 318



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 13/213 (6%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +  + ++L  +    P  FTY  L++G C  GK++ A  L D M  +G  P V  ++ +I
Sbjct: 13  QHGQAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVI 72

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
            G CK     +A+              F  +      P+  T NI +D L K+G V E  
Sbjct: 73  KGLCKAGRFGDALG------------YFKTVAGTKCTPDIITFNILVDALVKSGRVEEAF 120

Query: 265 ELFPTLEISN-CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           ++F ++  S+ C   V  + ++I G CK G  + A EL + ++      +V+ Y++L+  
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L K G+  K   LL  M   G   DV  +NTL+
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLL 213



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 42/248 (16%)

Query: 25  VTFNSLIKGFCMEGNI------RDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           +T++++I G C +  +        A ++++ M   GC PN  T   +I GL R       
Sbjct: 312 ITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQA 371

Query: 79  LKLHQEMVNG------------------MGDFGGIYK-----------PNVFCYGSLIDG 109
           L L + M++                     D    YK           PN   Y +LIDG
Sbjct: 372 LALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDG 431

Query: 110 LCKDRLVDQTKDLFMEMKDK---GINA-NTLL---CKKTKLVEANRLLELMMQRGLNPVI 162
           L K   VD+   +F  M +    G+   N++L   C   ++ EA R++E M+ +   P  
Sbjct: 432 LSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDG 491

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            +Y  L+ G C V  V  A  LF ++  KGF  +V  Y+VL+N  CK   + +A  V+ +
Sbjct: 492 ASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANK 551

Query: 223 MILNGFKK 230
           +I  G+K+
Sbjct: 552 LIEAGYKQ 559


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 150/329 (45%), Gaps = 49/329 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +LI  +     +  A+ +  +M   GCRPN  T   L+ GL + GN++   +++ +
Sbjct: 359 VTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAK 418

Query: 85  MV----NGMGDF------GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++    +   DF           PNV  YG+L+DGLCK   VD                 
Sbjct: 419 LIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH---------------- 462

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
                      A+ LL+ M+  G  P    Y  L++G+C  GK++ A  +F  M + G++
Sbjct: 463 -----------AHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYL 511

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P V +Y+ LI+   K+  ++ AM V  +M+ +            +  P   T    IDGL
Sbjct: 512 PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKD------------SCTPNVVTYTAMIDGL 559

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G   + ++L   +E   C   V  + +LI G  K G  +++ +LF ++S K    + 
Sbjct: 560 CRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 619

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEEN 343
           V Y +LI+ L   G + K   LL  M++ 
Sbjct: 620 VTYRVLINHLCAAGLLDKARLLLGEMKQT 648



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 146/331 (44%), Gaps = 29/331 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  LI  FC  G I  A  L ++M + GC P V T   LI    +   +     +   M
Sbjct: 325 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 384

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           V+         +PN   YG+L+DGLCK   + +  +++ ++     +A++          
Sbjct: 385 VDAGC------RPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADS---------- 428

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
            +       +  L P + TY  L++G C   KV+ A  L D+M   G  P+   Y  LI+
Sbjct: 429 -DFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALID 487

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G+CK   ++ A            +++F +M  C  +P   T    ID + K+G +   M+
Sbjct: 488 GFCKAGKIDSA------------QEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 535

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +   +   +C   V  + ++I G C+ G  E A +L + +  K    +VV Y  LI  LG
Sbjct: 536 VLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLG 595

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K G+I     L   M   GC+ +  T+  L+
Sbjct: 596 KAGKIDLSLDLFTQMSRKGCSPNYVTYRVLI 626



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 155/333 (46%), Gaps = 37/333 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+ G C    +  A +L+  M + GC PN    D LI G  + G ++      
Sbjct: 443 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA---- 498

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QE+   M   G  Y P+V  Y SLID + KD  +D    +  +M       N +      
Sbjct: 499 QEVFLQMTKCG--YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMI 556

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +  +A +LL LM ++G +P + TYT L++G    GK+++++ LF  M+RKG  
Sbjct: 557 DGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCS 616

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK-------IFN 233
           P+  +Y VLIN  C    +++A  +  EM               + GF K       I  
Sbjct: 617 PNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILE 676

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT-LEI-SNCELFVEIFNSLIRGCCK 291
           EM+    VP      + ID   K G +   MEL    +E+ S+ +   +++ SLI+  C 
Sbjct: 677 EMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCL 736

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
               E A  L+++++ +  V ++  +  LI  L
Sbjct: 737 ASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGL 769



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 161/387 (41%), Gaps = 59/387 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+ GF  +  +    +++  M T GC PN +  ++L+       +     KL 
Sbjct: 141 NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL- 199

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR------LVDQTKDLFMEM--------KD 128
              +N M   G    P    Y   I  +C         L+D  + ++ EM        K 
Sbjct: 200 ---LNRMTTCGC--PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKV 254

Query: 129 KGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
              N    LC   K  +A +L++ MM++G  P   TY+ ++   C   KV  A  LF  M
Sbjct: 255 NVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEM 314

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---- 230
              G  PDV++Y++LI+ +CK   +E+A  +  EM              +++ + K    
Sbjct: 315 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQV 374

Query: 231 -----IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL----EISNCELF--- 278
                IF+ M      P   T    +DGLCK G++ +  E++  L    + ++ + +   
Sbjct: 375 PQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPC 434

Query: 279 ---------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
                    V  + +L+ G CK    + A EL + +       + + Y+ LI    K G+
Sbjct: 435 EDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGK 494

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           I     + L M + G    V T+ +L+
Sbjct: 495 IDSAQEVFLQMTKCGYLPSVHTYTSLI 521



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 132/367 (35%), Gaps = 63/367 (17%)

Query: 53  FGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG--------MGDFGGI--------- 95
           FG RP+  T + L+  L   G ++L  ++ +EM           +G F            
Sbjct: 34  FGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWAD 93

Query: 96  ---------YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-----DKGINANTLLC--- 138
                    +K +      +I GL +    D+       M+        +   TLL    
Sbjct: 94  ALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFL 153

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           KK +L    R++ +MM  G NP    +  L++ YC       A  L + M   G  P   
Sbjct: 154 KKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYV 213

Query: 199 SYSVLINGYCKNFNVEE------AMNVSREMI--------------------LNGFKKIF 232
            Y++ I   C    +        A  +  EM+                    +  F K F
Sbjct: 214 VYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAF 273

Query: 233 N---EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
               EM     VP+T T +  I  LC    V +   LF  +++      V  +  LI   
Sbjct: 274 QLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSF 333

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           CK G+ E A  LF ++        VV Y  LIHA  K  Q+ + N +   M + GC  + 
Sbjct: 334 CKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPND 393

Query: 350 DTFNTLM 356
            T+  L+
Sbjct: 394 VTYGALV 400



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 136/353 (38%), Gaps = 24/353 (6%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           YRP + VT+N+L++     G +    ++ K+M+  G   +  T       L + G     
Sbjct: 36  YRP-SKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 94

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-----DKGINA 133
           L + +       DF    K +      +I GL +    D+       M+        +  
Sbjct: 95  LDMIER-----EDF----KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTY 145

Query: 134 NTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
            TLL    KK +L    R++ +MM  G NP    +  L++ YC       A  L + M  
Sbjct: 146 RTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTT 205

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  P    Y++ I   C          +    +L+  +KI+ EM   N V        F
Sbjct: 206 CGCPPGYVVYNIFIGSICGQ------EKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 259

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
              LC  G   +  +L   +           ++ +I   C     E A  LF ++    +
Sbjct: 260 ARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV 319

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             DV  Y ILI +  K G I++  +L   M   GC+  V T+  L+ ++L+ +
Sbjct: 320 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAK 372



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 94/241 (39%), Gaps = 51/241 (21%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ ++I G C  G    A +L+  M   GC PNV T   LI GL + G ++L+L L 
Sbjct: 548 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 607

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-------KGINANT 135
            +M            PN   Y  LI+ LC   L+D+ + L  EMK        +G     
Sbjct: 608 TQMSRKGC------SPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAI 661

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTY------------------------------ 165
               K+  + +  +LE M   G  P+   Y                              
Sbjct: 662 QGFSKS-FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSV 720

Query: 166 -------TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
                    L+   CL  +V  A  L+  M R+GF+P++  +  LI G  +    +EA+ 
Sbjct: 721 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQ 780

Query: 219 V 219
           +
Sbjct: 781 L 781



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 15/174 (8%)

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           D +   G+ P   +Y+ L+        V+    V +EM  +GF              + F
Sbjct: 29  DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGF------------CMDRF 76

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T   F   LCK G   + +++   +E  + +L   +   +I G  +   F+ A    +++
Sbjct: 77  TVGCFAHALCKEGRWADALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRM 133

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            C + + +VV Y  L+    K+ Q+     ++  M   GC  +   FN+L+ S+
Sbjct: 134 RCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSY 187



 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 17/208 (8%)

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G  P   TY  L+      G+V++   +   M+  GF  D F+     +  CK     +A
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 94

Query: 217 MN-VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           ++ + RE           + KL     +T  C   I GL +  +  E M     +  ++C
Sbjct: 95  LDMIERE-----------DFKL-----DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSC 138

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
              V  + +L+ G  K         + N +  +    +   +N L+H+   E        
Sbjct: 139 IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYK 198

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQKE 363
           LL  M   GC      +N  + S   +E
Sbjct: 199 LLNRMTTCGCPPGYVVYNIFIGSICGQE 226


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 169/368 (45%), Gaps = 38/368 (10%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N  TF   I+     G I +A  ++K+M   GC P+V T   LI  L   G +N   
Sbjct: 259 RP-NIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAK 317

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +L  +M          +KP+   Y +L+D       +D  K+ + EM+  G   + +   
Sbjct: 318 ELFLKMK------ASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFT 371

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  K+ EA   L++M ++G+ P + TY  L+ G   + +++ A+ LF+SM   
Sbjct: 372 ILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESL 431

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------------------- 228
           G     ++Y + I+ Y K+    +A+    +M  NG                        
Sbjct: 432 GLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEA 491

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           K+ FN +K C + P+  T NI +    K G V + ++L   +E + C+  V I NSLI  
Sbjct: 492 KEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDT 551

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K    + A ++F ++    L   VV YN L+  LGKEG++++   L   M  + C  +
Sbjct: 552 LYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPN 611

Query: 349 VDTFNTLM 356
             +FNTL+
Sbjct: 612 TISFNTLL 619



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 163/347 (46%), Gaps = 28/347 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+++L+       +I     L+++M + G RPN+ T    I  L R G ++    + + M
Sbjct: 229 TYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRM 288

Query: 86  VN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLLCK 139
            + G G       P+V  Y  LID LC    ++  K+LF++MK      +     TLL K
Sbjct: 289 DDAGCG-------PDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDK 341

Query: 140 KTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            +   + + + E    M   G  P + T+T L++  C VGKV+ A    D M ++G  P+
Sbjct: 342 FSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPN 401

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G  +   ++EA+            ++FN M+   +    +T  +FID   K
Sbjct: 402 LHTYNTLICGLLRLNRLDEAL------------ELFNSMESLGLETTAYTYILFIDYYGK 449

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G   + ++ F  ++ +     +   N+ +    + G  E A E FN L    L  D + 
Sbjct: 450 SGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAIT 509

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           YNIL+   GK G++     LL  MEENGC  +V   N+L+ +  + +
Sbjct: 510 YNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKAD 556



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 168/380 (44%), Gaps = 40/380 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +++C    + +T+N L++ +   G + DA +L+ +M   GC P V   ++LI  L +   
Sbjct: 498 LKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADR 557

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++   K+ Q M            P V  Y +L+ GL K+  V +   LF  M       N
Sbjct: 558 VDEAWKMFQRMKEMK------LAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPN 611

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           T+        LCK  ++  A ++L  M +    P + TY  ++ G     +VN A  LF 
Sbjct: 612 TISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFH 671

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN-------------------- 226
            M +K   PD  +   L+ G  K+  +E+A  V++E + +                    
Sbjct: 672 QM-KKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIE 730

Query: 227 ---GFKKIFNEMKLCNVVPETFTCNI-FIDGLCKNGHVLEVMELFPTLEISNC-ELFVEI 281
              G   +F E  +CN + E  +  I  +  LCK+G  ++   +F  L  S C    +E 
Sbjct: 731 AEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEA 790

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +NSLI G  K  + E+A  LF K+       DV  YN+ + ALGK G+IK+   L   M 
Sbjct: 791 YNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEML 850

Query: 342 ENGCALDVDTFNTLMISFLQ 361
             GC  +  T N ++   ++
Sbjct: 851 FRGCKPNTITHNIVIFGLVK 870



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 148/338 (43%), Gaps = 26/338 (7%)

Query: 26   TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
             +NSLI G         A  L  KM   GC P+V T +  +  L ++G +     L++EM
Sbjct: 790  AYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEM 849

Query: 86   VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            +     F G  KPN   +  +I GL K   +D+  DL+ ++     +            L
Sbjct: 850  L-----FRGC-KPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGL 903

Query: 138  CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
             K  +L EA +  E M+  G  P    Y  L+NG+   G V  A  LF  M ++G  PD+
Sbjct: 904  LKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDL 963

Query: 198  FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             SYS++++  C    V++A++             F E+KL  + P+    N+ I+GL ++
Sbjct: 964  KSYSIMVDCLCMVGKVDDALHY------------FEELKLSGLDPDLVCYNLMINGLGRS 1011

Query: 258  GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
              V E + LF  +        +  +N+LI      G+ E A +++ +L  K L  +V  Y
Sbjct: 1012 QRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTY 1071

Query: 318  NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
            N LI      G   +   +   M   GC  +  TF  L
Sbjct: 1072 NALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 157/343 (45%), Gaps = 27/343 (7%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMA-TFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            +D     L+K  C  G   DA  +  K+  +F   P++   ++LI GL +     +   L
Sbjct: 751  DDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGL 810

Query: 82   HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
              +M N          P+VF Y   +D L K   + +  DL+ EM  +G   NT+     
Sbjct: 811  FYKMKNAGC------TPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIV 864

Query: 137  ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               L K   L +A  L   +M    +P  +TY PL++G   +G++  A   F+ M   G 
Sbjct: 865  IFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGC 924

Query: 194  MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            MP+   Y++L+NG+ K  +VE A  + R M+  G +            P+  + +I +D 
Sbjct: 925  MPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIR------------PDLKSYSIMVDC 972

Query: 254  LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            LC  G V + +  F  L++S  +  +  +N +I G  +    E A  LF+++  + +  D
Sbjct: 973  LCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPD 1032

Query: 314  VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +  YN LI  LG  G +++   +   ++  G   +V T+N L+
Sbjct: 1033 LYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALI 1075



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 141/326 (43%), Gaps = 26/326 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF  LI   C  G + +A   +  M   G  PN+ T +TLI GL R   ++  L    E
Sbjct: 368 VTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEAL----E 423

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC------ 138
           + N M   G   +   + Y   ID   K     +    F +MK  GI  N + C      
Sbjct: 424 LFNSMESLG--LETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYS 481

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             ++ +L EA      + + GL P   TY  L+  Y   G+V+ AI L   M   G  P+
Sbjct: 482 LAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPE 541

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V   + LI+   K   V+EA             K+F  MK   + P   T N  + GL K
Sbjct: 542 VVIINSLIDTLYKADRVDEAW------------KMFQRMKEMKLAPTVVTYNTLLAGLGK 589

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V E   LF  +   +C      FN+L+   CK G  ++A ++  +++  N   DV+ 
Sbjct: 590 EGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLT 649

Query: 317 YNILIHALGKEGQIKKENYLLLSMEE 342
           YN +I+ L KE ++    +L   M++
Sbjct: 650 YNTVIYGLIKENRVNYAFWLFHQMKK 675



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 121/270 (44%), Gaps = 20/270 (7%)

Query: 98   PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
            P++  Y SLIDGL K RL +    LF +MK+ G   +          L K  K+ E   L
Sbjct: 786  PSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDL 845

Query: 150  LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
             E M+ RG  P   T+  ++ G      ++ AI L+  +    F P  ++Y  LI+G  K
Sbjct: 846  YEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLK 905

Query: 210  NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
               +EEA            K+ F EM     +P     NI ++G  K G V    ELF  
Sbjct: 906  LGRLEEA------------KQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRR 953

Query: 270  LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
            +        ++ ++ ++   C  G  + A   F +L    L  D+V YN++I+ LG+  +
Sbjct: 954  MVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQR 1013

Query: 330  IKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +++   L   M   G   D+ T+N L+++ 
Sbjct: 1014 VEEALSLFDEMRNRGITPDLYTYNALILNL 1043



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 156/367 (42%), Gaps = 38/367 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+ G   EG +++A+ L K M    C PN  + +TL+  L + G ++L LK+   
Sbjct: 578 VTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFR 637

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC------ 138
           M   M  F     P+V  Y ++I GL K+  V+    LF +MK         LC      
Sbjct: 638 MTE-MNCF-----PDVLTYNTVIYGLIKENRVNYAFWLFHQMKKVIYPDYVTLCTLLPGV 691

Query: 139 -KKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            K  ++ +A R+  E +   G +     +  L+ G  +  ++  +I   +S+       D
Sbjct: 692 IKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICED 751

Query: 197 VFSYSVLINGYCKNFNVEEAMNV---------------SREMILNGFKK---------IF 232
                 L+   CK+    +A NV               +   +++G  K         +F
Sbjct: 752 DSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLF 811

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            +MK     P+ FT N+F+D L K+G + E+ +L+  +    C+      N +I G  K 
Sbjct: 812 YKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKS 871

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              + A +L+  L   +       Y  LI  L K G++++       M + GC  +   +
Sbjct: 872 NSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLY 931

Query: 353 NTLMISF 359
           N LM  F
Sbjct: 932 NILMNGF 938



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 99/188 (52%), Gaps = 16/188 (8%)

Query: 27   FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM- 85
            +N L+ GF  +G++  A +L ++M   G RP++ +   ++  L   G ++  L   +E+ 
Sbjct: 931  YNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELK 990

Query: 86   VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------NANTLLC 138
            ++G+        P++ CY  +I+GL + + V++   LF EM+++GI       NA  L  
Sbjct: 991  LSGL-------DPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNL 1043

Query: 139  KKTKLVE-ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
                +VE A ++ E +  +GL P +FTY  L+ G+ + G  + A A++  M   G  P+ 
Sbjct: 1044 GIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNT 1103

Query: 198  FSYSVLIN 205
             +++ L N
Sbjct: 1104 GTFAQLPN 1111



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 105/251 (41%), Gaps = 41/251 (16%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV---------AIALFDSMARKGF 193
           L EA   LE M + G          +LNGY  +G +++         A+ ++  M  +G 
Sbjct: 173 LREAPVALEKMRKVGF---------VLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGI 223

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK----------------------- 230
            P + +YS L+    K  ++E  M + +EM   G +                        
Sbjct: 224 KPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYG 283

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           I   M      P+  T  + ID LC  G +    ELF  ++ S+ +     + +L+    
Sbjct: 284 ILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFS 343

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
             G  +   E ++++     + DVV + ILI AL K G++ +    L  M++ G A ++ 
Sbjct: 344 DHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLH 403

Query: 351 TFNTLMISFLQ 361
           T+NTL+   L+
Sbjct: 404 TYNTLICGLLR 414



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 23/39 (58%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
            N  T+N+LI+G  M GN   A  + KKM   GCRPN  T
Sbjct: 1067 NVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGT 1105



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 1    TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            + +V  AL  F     R   P +  T+N+LI    + G + +A ++ +++   G  PNV 
Sbjct: 1011 SQRVEEALSLFDEMRNRGITP-DLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVF 1069

Query: 61   TCDTLITGLRRTGNMNLTLKLHQEMVNG 88
            T + LI G   +GN +    ++++M+ G
Sbjct: 1070 TYNALIRGHSMSGNPDRAYAVYKKMMVG 1097


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 164/371 (44%), Gaps = 37/371 (9%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            N+VT+N+LI GF  EG I  A+Q+  +M+ F   PN  T + LI G    G+    L+L 
Sbjct: 1088 NEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLL 1147

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK----GINANTLL- 137
              M     +  G+ + N   YG+L++GLCK    +  K L   M+      G  A T+L 
Sbjct: 1148 DHM-----EAAGL-RLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLI 1201

Query: 138  ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               CK   L EA +L+  M + G+NP + TY+ L+NG+C VG +  A  +   M R G +
Sbjct: 1202 DGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLV 1261

Query: 195  PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
             +   YS LI  +C++ NV EAM V   M  NG                        +K 
Sbjct: 1262 LNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKF 1321

Query: 232  FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
               M    +VP + T +  I+G    G  L     F  +           + SL++G CK
Sbjct: 1322 LCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCK 1381

Query: 292  FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
             G    A +  N+L       D V YN L+    K G + +   L   M +N    D  T
Sbjct: 1382 GGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYT 1441

Query: 352  FNTLMISFLQK 362
            +++L+    +K
Sbjct: 1442 YSSLLTGLCRK 1452



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 140/295 (47%), Gaps = 31/295 (10%)

Query: 96   YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTL------LCKKTKLVEAN 147
            +KP+V+    ++  + KD+  +    LF EM DKGI  N  T       LC +  L +A 
Sbjct: 945  FKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAG 1004

Query: 148  RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
             LL+ M + G  P I TY  LLN YC  G+   AI L D M  KG   DV +Y+V I+  
Sbjct: 1005 NLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNL 1064

Query: 208  CKNFNVEEAM----NVSREMI----------LNGFKK---------IFNEMKLCNVVPET 244
            C N    +A      + +EMI          +NGF K         +FNEM   ++ P  
Sbjct: 1065 CTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNC 1124

Query: 245  FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
             T N  I G C  G   E + L   +E +   L    + +L+ G CK   FE+A  L  +
Sbjct: 1125 VTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLER 1184

Query: 305  LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +   ++V   +AY +LI  L K G + +   L+ +M ++G   DV T+++L+  F
Sbjct: 1185 MRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGF 1239



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 166/372 (44%), Gaps = 40/372 (10%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            + +  LI G C  G + +A QLV  M   G  P+V T  +LI G  R GN    +K  +E
Sbjct: 1195 IAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGN----IKSAKE 1250

Query: 85   MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TL 136
            ++  M   G +   N   Y +LI   C+   V +   ++  M   G  A+        + 
Sbjct: 1251 IICRMYRSGLVL--NKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSS 1308

Query: 137  LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            LC+  KL EA + L  M + GL P   TY  ++NGY  +G    A + FD M + G  P 
Sbjct: 1309 LCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPS 1368

Query: 197  VFSYSVLINGYCKNFNVEEA-----------------------MNVSREMILNGFKKIFN 233
             F+Y  L+ G CK  N+ EA                           +   L+    +F+
Sbjct: 1369 FFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFD 1428

Query: 234  EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE--IFNSLIRGCCK 291
            +M   NV+P+++T +  + GLC+ G  +  + LF T  +    LF    ++  L+ G  K
Sbjct: 1429 KMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGT-AMGRGTLFPNHVMYTCLVDGLSK 1487

Query: 292  FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
             G  + A   F ++  K    D VA+N +I +  + GQ+ K N    +M   G   ++ T
Sbjct: 1488 AGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLAT 1547

Query: 352  FNTLMISFLQKE 363
            +N L+  F +K+
Sbjct: 1548 YNILLHGFSKKQ 1559



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 157/342 (45%), Gaps = 26/342 (7%)

Query: 26   TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            TFN LI G C+EGN++ A  L+K+M   G  P + T +TL+    + G     ++L   M
Sbjct: 986  TFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYM 1045

Query: 86   VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
            +       GI + +V  Y   ID LC +    +   L  +M+ + I+ N +         
Sbjct: 1046 I-----CKGI-EADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGF 1099

Query: 138  CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
             K+ K+  A ++   M +  L+P   TY  L+ G+C VG    A+ L D M   G   + 
Sbjct: 1100 VKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNE 1159

Query: 198  FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
             +Y  L+NG CK+   E A            K++   M++ ++V       + IDGLCKN
Sbjct: 1160 VTYGTLLNGLCKHEKFELA------------KRLLERMRVNDMVVGHIAYTVLIDGLCKN 1207

Query: 258  GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
            G + E ++L   +        V  ++SLI G C+ G  + A E+  ++    LV + + Y
Sbjct: 1208 GMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIY 1267

Query: 318  NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + LI+   + G + +   +   M  NG   D  T N L+ S 
Sbjct: 1268 STLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSL 1309



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 176/415 (42%), Gaps = 64/415 (15%)

Query: 5    LGALMAFGSFIRRCYRP---LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
            +G + +    I R YR    LN + +++LI  FC  GN+ +A ++   M   G   +  T
Sbjct: 1242 VGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFT 1301

Query: 62   CDTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGI----------- 95
            C+ L++ L R G +    K    M               +NG G  G             
Sbjct: 1302 CNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMI 1361

Query: 96   ---YKPNVFCYGSLIDGLCKD-RLVDQTKDL----FMEMKDKGINANTLL---CKKTKLV 144
                 P+ F YGSL+ GLCK   LV+  K L    ++      +  NTLL   CK   L 
Sbjct: 1362 KCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLH 1421

Query: 145  EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF-DSMARKGFMPDVFSYSVL 203
            EA  L + M+Q  + P  +TY+ LL G C  GK   A+ LF  +M R    P+   Y+ L
Sbjct: 1422 EAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCL 1481

Query: 204  INGYCKNFNVEEAMNVSREMILNG-------FKKI----------------FNEMKLCNV 240
            ++G  K  + + A     EM+  G       F  I                F+ M+   V
Sbjct: 1482 VDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGV 1541

Query: 241  VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
             P   T NI + G  K   +L  + L+ T+           F+SLI G  K GI ++  +
Sbjct: 1542 CPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVK 1601

Query: 301  LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
            L  K+  +  +AD   +NILI+   + G+++K   L+  M   G   D DT+N +
Sbjct: 1602 LLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHI 1656



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 146/365 (40%), Gaps = 61/365 (16%)

Query: 23   NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
            + V FN++I      G +  A+     M  +G  PN+ T + L+ G  +   +   L L+
Sbjct: 1509 DTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLY 1568

Query: 83   QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA--------- 133
              M+       GI+ P+   + SLI GL K  + D    L  +M  +G  A         
Sbjct: 1569 STMMRE-----GIF-PDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILI 1622

Query: 134  -------------------NTL---------------LCKKTKLVEANRLLELMMQRGLN 159
                               NTL               L KK+   E+  +L  M++ G+ 
Sbjct: 1623 NKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVI 1682

Query: 160  PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
            P    Y  L+NG C VG +  A  L D M   GF     + S ++ G       E+AM V
Sbjct: 1683 PKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLV 1742

Query: 220  SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
               M+          M+L   +P   T    +   C++  + E ++L   +E+   +L V
Sbjct: 1743 LDHML---------RMRL---LPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDV 1790

Query: 280  EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
              +N LI G C  G    A EL+ ++  ++L  ++  Y +L+ A+     + +   LL  
Sbjct: 1791 VAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTD 1850

Query: 340  MEENG 344
            ++E G
Sbjct: 1851 LQERG 1855



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 167/421 (39%), Gaps = 74/421 (17%)

Query: 6    GALMAFGSFIRRC-YRP--LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            G L+    F+ R  Y P  ++ V +N+L+   C  GN+ +A  L  KM      P+  T 
Sbjct: 1383 GNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTY 1442

Query: 63   DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             +L+TGL R G     + L       MG   G   PN   Y  L+DGL K          
Sbjct: 1443 SSLLTGLCRKGKAVTAVCL---FGTAMGR--GTLFPNHVMYTCLVDGLSKAGHPKAAFYF 1497

Query: 123  FMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
            F EM  KG   +T+          ++ ++++AN     M   G+ P + TY  LL+G+  
Sbjct: 1498 FEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSK 1557

Query: 175  VGKVNVAIALFDSMARKGFMPD-----------------------------------VFS 199
               +   ++L+ +M R+G  PD                                    F+
Sbjct: 1558 KQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFT 1617

Query: 200  YSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEMK 236
            +++LIN Y ++  + +A ++   M              I NG  K         + +EM 
Sbjct: 1618 FNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEML 1677

Query: 237  LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
               V+P+       I+G+C+ G +    +L   +E           ++++RG    G  E
Sbjct: 1678 ENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTE 1737

Query: 297  IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             A  + + +    L+  +  +  L+H   ++ +I +   L   ME  G  LDV  +N L+
Sbjct: 1738 DAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLI 1797

Query: 357  I 357
            +
Sbjct: 1798 M 1798



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 119/264 (45%), Gaps = 25/264 (9%)

Query: 99   NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL 158
            +++C  + I  L K R+ D  K +   +   GI + ++      L++   L         
Sbjct: 864  HMYCLTAHI--LVKARMYDSAKSILRHLCQMGIGSKSIF---GALMDTYPLC-------- 910

Query: 159  NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            N +   +  L+  Y   G ++ A+  F+ +   GF P V++ ++++    K+   E   +
Sbjct: 911  NSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWS 970

Query: 219  VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
            + REM   G            + P   T NI I+GLC  G++ +   L   +E +     
Sbjct: 971  LFREMSDKG------------ICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPT 1018

Query: 279  VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
            +  +N+L+   CK G ++ A EL + + CK + ADV  YN+ I  L    +  K   LL 
Sbjct: 1019 IVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLK 1078

Query: 339  SMEENGCALDVDTFNTLMISFLQK 362
             M +   + +  T+NTL+  F+++
Sbjct: 1079 KMRKEMISPNEVTYNTLINGFVKE 1102



 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
             TF +L+  FC +  I +A +L   M   G + +V   + LI G+   G+     +L++E
Sbjct: 1756 ATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEE 1815

Query: 85   MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
            M +   D      PN+  Y  L+D +     + Q + L  +++++G+
Sbjct: 1816 MRHR--DLC----PNITTYAVLVDAISAANNLIQGEKLLTDLQERGL 1856


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 172/368 (46%), Gaps = 42/368 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+K  C    +  A +L+ +M++ GC P+  +  TLI+ L + G +    +L 
Sbjct: 180 NVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELA 239

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
                        + P+V  Y +LI+G+CK+   ++   L  EM +KGI+ N +      
Sbjct: 240 MS-----------FTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTII 288

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L     +  +  +L  M  RG +P + T+T L+ G+ L G  + A+  +D M R+G +
Sbjct: 289 NALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVV 348

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKKI 231
           P+V +Y+ L++G C   ++ +A++V  +M +NG                         ++
Sbjct: 349 PNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEV 408

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           +N M      P        +D LC+N    +   L   +++ NC      FN+ I+G C 
Sbjct: 409 WNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCG 468

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  + A ++F+++       +   YN L+ +L K+ +  +   L+  ME  G  L++ T
Sbjct: 469 SGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVT 528

Query: 352 FNTLMISF 359
           +NT++  +
Sbjct: 529 YNTIIYGY 536



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 155/352 (44%), Gaps = 30/352 (8%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           F R C   L+  TF SLIKGF ++G   +A     +M   G  PNV   + L+ GL    
Sbjct: 308 FARGCSPNLH--TFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKR 365

Query: 74  NMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
           ++   + +  +M +NG         PNV  Y +LIDG  K   +D   +++  M   G +
Sbjct: 366 SLGDAVSVFNQMEINGCC-------PNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCH 418

Query: 133 ANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            N +        LC+ +   +A  L+E M      P   T+   + G C  G+V+ AI +
Sbjct: 419 PNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKV 478

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
           FD M   G  P+  +Y+ L++   K+    EA  + ++M   G      E+ L       
Sbjct: 479 FDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGI-----ELNL------- 526

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T N  I G C  G + E +EL   + +   +      N +I   CK G   IA +L ++
Sbjct: 527 VTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDR 586

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           LS      D++AY  LI  +     +++    L  M   G + +V T+N L+
Sbjct: 587 LSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLV 638



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 146/337 (43%), Gaps = 31/337 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  +   IR    P N V +N+L+ G C + ++ DA  +  +M   GC PNV T   LI
Sbjct: 335 ALDFWDRMIREGVVP-NVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALI 393

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G+++       E+ N M   G    PNV  Y  ++D LC++ + +Q   L   M
Sbjct: 394 DGYAKAGDLDGA----SEVWNWMITHGC--HPNVVAYTCMVDVLCRNSMFNQAYCLIENM 447

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           + +    NT+        LC   ++  A ++ + M   G  P   TY  LL+      + 
Sbjct: 448 QVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRF 507

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A  L   M  +G   ++ +Y+ +I GYC    + EA+ +  +M++ G K         
Sbjct: 508 GEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTK--------- 558

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P+  T NI ID  CK G V   ++L   L        +  + SLI G C     E A
Sbjct: 559 ---PDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEA 615

Query: 299 SELFNKLSCKNLVADVVAYNILIHAL----GKEGQIK 331
                ++  + +  +V  +N+L+  L    G  G ++
Sbjct: 616 IVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQ 652



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 117/263 (44%), Gaps = 28/263 (10%)

Query: 6   GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           GA   +   I     P N V +  ++   C       A  L++ M    C PN  T +T 
Sbjct: 404 GASEVWNWMITHGCHP-NVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTF 462

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I GL  +G ++  +K+  +M N  G F     PN   Y  L+D L KDR   +   L  +
Sbjct: 463 IKGLCGSGRVDWAIKVFDQMGNS-GCF-----PNTTTYNELLDSLLKDRRFGEAFGLVKD 516

Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           M+ +GI  N +         C    L EA  LL  M+ RG  P   T   +++ YC  GK
Sbjct: 517 MEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGK 576

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           VN+AI L D ++   + PD+ +Y+ LI+G C +  VEEA+   R M+  G          
Sbjct: 577 VNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEG---------- 626

Query: 238 CNVVPETFTCNIFIDGLCKN-GH 259
             + P   T N+ +  L  N GH
Sbjct: 627 --ISPNVATWNVLVRHLFSNMGH 647



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 134/302 (44%), Gaps = 30/302 (9%)

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L+   ++ L L+  + + N        +K     Y  +I+ L  +R +D  + L  +MK 
Sbjct: 50  LKHEHDITLALEYFKSIANSKS-----FKHTPLTYQMMIEKLASEREMDCVQYLLQQMKL 104

Query: 129 KGINANTLLC--------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI+ +  L         +     +A +    M    + P +  Y  +L+      +  +
Sbjct: 105 EGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQM 164

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
              ++ +M + G  P+VF+Y++L+   CKN  V+            G  K+  EM     
Sbjct: 165 INPIYSNMKKDGMEPNVFTYNILLKALCKNNRVD------------GAHKLLVEMSSKGC 212

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  +    I  LCK G V E  EL  +   S     V ++N+LI G CK   FE A +
Sbjct: 213 DPDEVSYTTLISSLCKLGKVKEARELAMSFTPS-----VPVYNALINGVCKEYTFEEAFQ 267

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           L +++  K +  +V++Y  +I+AL   G ++    +L  M   GC+ ++ TF +L+  F 
Sbjct: 268 LLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFF 327

Query: 361 QK 362
            K
Sbjct: 328 LK 329


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 165/366 (45%), Gaps = 38/366 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LNDVT+N +I     EG++ +A++LV  M     + +  T + LIT L   G +     L
Sbjct: 278 LNDVTYNVVISFLAREGHLENAAKLVDSM-RLSKKASSFTYNPLITALLERGFVQKVEAL 336

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
             EM N      GI  P +  Y ++I GL K   V+  +  F EM+  G     I  N++
Sbjct: 337 QMEMEN-----EGIM-PTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSM 390

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   CK   L EA  LL  + + GL P + TY  L++GYC +G +  A  L + M  +G 
Sbjct: 391 LNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGC 450

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
            PDV +Y++L+NG  K  N+  A     EM+  G +                       +
Sbjct: 451 FPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQ 510

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +   M L  + P+T T N+ IDGLCK G++ +  +L   +     +     +  LI   C
Sbjct: 511 LREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHC 570

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           + G+   A +L N +    L   VV Y ILIH   + G +         M + G   +  
Sbjct: 571 ERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEI 630

Query: 351 TFNTLM 356
           T+N L+
Sbjct: 631 TYNVLI 636



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 154/343 (44%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+NS++ G+C  GN+++A  L+  +   G  P V T +TLI G  R G +    +L +E
Sbjct: 385 ITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEE 444

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCK 139
           MV   G F     P+V  Y  L++G  K R +   ++ F EM  KG+       NT +C 
Sbjct: 445 MVE-QGCF-----PDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICA 498

Query: 140 KTKLVEANR---LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +  L + ++   L E+MM +G+ P   TY  +++G C  G +  A  L   M   G  PD
Sbjct: 499 ELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPD 558

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+ +C+   + EA  +   M+ +G +            P   T  I I   C+
Sbjct: 559 CITYTCLIHAHCERGLLSEARKLLNGMVSDGLQ------------PSVVTYTILIHTCCR 606

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G++      F  +     E     +N LI   C+ G   +A   F+++  + L  +   
Sbjct: 607 RGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYT 666

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y +LI    +EG       L   M +NG   D  T N L   F
Sbjct: 667 YTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF 709



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 145/341 (42%), Gaps = 33/341 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL   G   R    P   +T+N+LI G+C  G + +A +L ++M   GC P+V T   L+
Sbjct: 403 ALWLLGDLRRAGLAP-TVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILM 461

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM-- 124
            G  +  N+ +  +   EM++      G+ +P+ F Y + I   C + ++  T   F   
Sbjct: 462 NGSHKVRNLPMAREFFDEMLSK-----GL-QPDCFAYNTRI---CAELILGDTHKAFQLR 512

Query: 125 -EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
             M  KGI  +T+        LCK   L +A  L   M+  GL P   TYT L++ +C  
Sbjct: 513 EVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCER 572

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G ++ A  L + M   G  P V +Y++LI+  C+  N+  A    R+M+  G +      
Sbjct: 573 GLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIE------ 626

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                 P   T N+ I  LC+ G  L     F  +           +  LI G C+ G +
Sbjct: 627 ------PNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNW 680

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             A  L+ ++    +  D   +N L     K        YL
Sbjct: 681 ADAIRLYFEMHQNGIPPDYCTHNALFKGFDKGHMYHAIEYL 721



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 141/340 (41%), Gaps = 38/340 (11%)

Query: 34  FCMEGNIRDASQLV---------KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           F  E   RDA+            + +A  G  P+V  C+ ++  LR     +    +++E
Sbjct: 174 FSAESQARDATPAACSTLCLAAFRVVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYRE 233

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-------INAN--- 134
           M+          +P +  Y +L+D   K+   D+   L  EM+ +G       +  N   
Sbjct: 234 MLQLE------IEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVI 287

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           + L ++  L  A +L++  M+       FTY PL+      G V    AL   M  +G M
Sbjct: 288 SFLAREGHLENAAKLVD-SMRLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIM 346

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P + +Y+ +I+G  K+  VE A            +  F EM+   ++P+  T N  ++G 
Sbjct: 347 PTLVTYNAIIHGLLKSEQVEAA------------QLKFAEMRAMGLLPDLITYNSMLNGY 394

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G++ E + L   L  +     V  +N+LI G C+ G  E A  L  ++  +    DV
Sbjct: 395 CKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDV 454

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
             Y IL++   K   +         M   G   D   +NT
Sbjct: 455 CTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNT 494



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 17/210 (8%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG---FMPDVFSYSVLINGYCK 209
           M+Q  + P I TY  LL+ +   G+ + A  L   M  +G    + DV +Y+V+I+    
Sbjct: 234 MLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDV-TYNVVIS---- 288

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                    ++RE  L    K+ + M+L      +FT N  I  L + G V +V  L   
Sbjct: 289 --------FLAREGHLENAAKLVDSMRLSKKA-SSFTYNPLITALLERGFVQKVEALQME 339

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +E       +  +N++I G  K    E A   F ++    L+ D++ YN +++   K G 
Sbjct: 340 MENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGN 399

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +K+  +LL  +   G A  V T+NTL+  +
Sbjct: 400 LKEALWLLGDLRRAGLAPTVLTYNTLIDGY 429



 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN--CELFVEIFNSLI 286
           + ++ EM    + P   T N  +D   K G   E   L   +E     C L    +N +I
Sbjct: 228 RAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVI 287

Query: 287 RGCCKFGIFEIASELFN--KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
               + G  E A++L +  +LS K   A    YN LI AL + G ++K   L + ME  G
Sbjct: 288 SFLAREGHLENAAKLVDSMRLSKK---ASSFTYNPLITALLERGFVQKVEALQMEMENEG 344

Query: 345 CALDVDTFNTLMISFLQKE 363
               + T+N ++   L+ E
Sbjct: 345 IMPTLVTYNAIIHGLLKSE 363


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ T+ SLI G C  G +  A +L+ +M   G  P V   + +I GL + G     L   
Sbjct: 29  NEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYF 88

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTL 136
           + +       G    P++  +  L+D L K   V++   +F  M          +   T+
Sbjct: 89  KTVA------GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTV 142

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  KL  A  LL+LM + G  P + TY+ L+ G C  G+ +    L   M R+GF
Sbjct: 143 INGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGF 202

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PDV  Y+ L+NG CK+  ++EA+ + + MI +G              P   T N  ++ 
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG------------CYPTVVTYNSLMEL 250

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C++  V     L   +    C   V  +N++I G C+    + A  L  ++     V D
Sbjct: 251 FCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPD 310

Query: 314 VVAYNILIHALGKEGQIKKENYL------LLSMEENGCALDVDTFNTLM 356
           V+ Y+ +I  L K+ ++  +  L      L  M++ GC  +  T+  ++
Sbjct: 311 VITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVI 359



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 174/413 (42%), Gaps = 79/413 (19%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ ++I G C +G +  A +L+  M   GC PNV T   L+ GL + G  +    L 
Sbjct: 135 NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLL 194

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
           QEM          ++P+V  Y +L++GLCK R +D+  +L   M   G     +  N+L+
Sbjct: 195 QEMTRRG------FQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLM 248

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+  ++  A RL+++M +RG  P +  Y  ++ G C   +++ A AL   M     +
Sbjct: 249 ELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV 308

Query: 195 PDVFSYSVLINGYCKNFNV----------------------------------------- 213
           PDV +YS +I+G CK++ V                                         
Sbjct: 309 PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKS 368

Query: 214 EEAMNVSREMI-----------------------LNGFKKIFNEMKLCNVVPETFTCNIF 250
           ++A+ + R MI                       L+   KIF  M      P        
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAAL 428

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           IDGL K G V + + +F  L + +    V  +NS++ G C  G  E A  +   +  K  
Sbjct: 429 IDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKEC 487

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             D  +Y  LI  L +   +++   L  ++E  G A++V  +N L+    +K+
Sbjct: 488 FPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKK 540



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 158/349 (45%), Gaps = 51/349 (14%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           CY  +  VT+NSL++ FC    +  A +L++ M+  GC P+V   +T+I GL R   ++ 
Sbjct: 237 CYPTV--VTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDD 294

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137
              L ++MV           P+V  Y ++IDGLCKD  VD                    
Sbjct: 295 AQALLKQMVAAR------CVPDVITYSTIIDGLCKDWRVD-------------------- 328

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
               KL  A  +LE+M Q G  P   TY  ++ G C   K   A+AL   M     +PD+
Sbjct: 329 -ADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDL 387

Query: 198 FSYSVLINGYCKNFNVEEAMN--------------VSREMILNGFKK---IFNEMKLCNV 240
            S+S++I   CK+ +++ A                V+   +++G  K   +   +++  +
Sbjct: 388 SSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFEL 447

Query: 241 VPETF-----TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
           + E+F     T N  +DGLC  G + E + +   +    C      + +LIRG C+    
Sbjct: 448 MVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCV 507

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           E A ELF  +  K    +V  YN+L++ L K+ ++   + +   + E G
Sbjct: 508 EEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 135/303 (44%), Gaps = 56/303 (18%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEA--- 146
           PN F YGSLI GLCK   +DQ  +L  EM+D+GI             LCK  +  +A   
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGY 87

Query: 147 ----------------NRLLELMMQRGLN-----------------PVIFTYTPLLNGYC 173
                           N L++ +++ G                   P + TYT ++NG C
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             GK++ AI L D M   G  P+V +YSVL+ G CK    ++   + +EM   GF+    
Sbjct: 148 KDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQ---- 203

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+    N  ++GLCK+  + E +EL   +  S C   V  +NSL+   C+  
Sbjct: 204 --------PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSK 255

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A  L   +S +    DV+ YN +I  L ++ ++     LL  M    C  DV T++
Sbjct: 256 QVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYS 315

Query: 354 TLM 356
           T++
Sbjct: 316 TII 318



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 13/213 (6%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +  + ++L  +    P  FTY  L++G C  GK++ A  L D M  +G  P V  ++ +I
Sbjct: 13  QHGQAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVI 72

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
            G CK     +A+              F  +      P+  T NI +D L K+G V E  
Sbjct: 73  RGLCKAGRFGDALG------------YFKTVAGTKCTPDIITFNILVDALVKSGRVEEAF 120

Query: 265 ELFPTLEISN-CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           ++F ++  S+ C   V  + ++I G CK G  + A EL + ++      +V+ Y++L+  
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L K G+  K   LL  M   G   DV  +NTL+
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLL 213



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 42/248 (16%)

Query: 25  VTFNSLIKGFCMEGNI------RDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           +T++++I G C +  +        A ++++ M   GC PN  T   +I GL R       
Sbjct: 312 ITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQA 371

Query: 79  LKLHQEMVNG------------------MGDFGGIYK-----------PNVFCYGSLIDG 109
           L L + M++                     D    YK           PN   Y +LIDG
Sbjct: 372 LALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDG 431

Query: 110 LCKDRLVDQTKDLFMEMKDK---GINA-NTLL---CKKTKLVEANRLLELMMQRGLNPVI 162
           L K   VD+   +F  M +    G+   N++L   C   ++ EA R++E M+ +   P  
Sbjct: 432 LSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDG 491

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
            +Y  L+ G C V  V  A  LF ++  KGF  +V  Y+VL+N  CK   + +A  V+ +
Sbjct: 492 ASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANK 551

Query: 223 MILNGFKK 230
           +I  G+K+
Sbjct: 552 LIEAGYKQ 559


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 162/348 (46%), Gaps = 24/348 (6%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F S+I+      +  +FN +IKG C  GN + A +LV++M  FGC P+  T + L+
Sbjct: 198 AVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILV 257

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL R   +N   K H+ +     D  G+  PN   Y S+I G CK   ++    ++ +M
Sbjct: 258 DGLCRAKQVN---KGHEVLRRLQRD--GVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDM 312

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            + G   NT+          K   +  A R+   ++ R   P + T++ L++GYC  G++
Sbjct: 313 LESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQL 372

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + A  ++  M      P+V+++S++I+  CK     EA+++ RE+ +             
Sbjct: 373 DDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMR-----------T 421

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
           ++ P+TF  N  ID LCK G V E   +   ++   C      +  LI G C  G    A
Sbjct: 422 DIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEA 481

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
             LF+K+       D +  N  +  + K G   + + ++L    +G A
Sbjct: 482 ITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEVDQIMLIASGHGLA 529



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 167/352 (47%), Gaps = 28/352 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDA-SQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           L +  F S + G C    + DA S L+ K +  GC       + L+  L   G     + 
Sbjct: 141 LPEAGFFSFVAGSCTNAGLLDAASTLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVA 200

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L +  +       G+Y P+V+ +  +I G+C+     +  +L   M + G + +T+    
Sbjct: 201 LFESWIQD-----GLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNI 255

Query: 137 ----LCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
               LC+  ++ + + +L  + + G+  P   TYT +++GYC  GK+  A+++++ M   
Sbjct: 256 LVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLES 315

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+  +Y+VLINGY K  ++E A+ + R++IL             +  P+  T +  I
Sbjct: 316 GTRPNTVTYNVLINGYGKALDMESAVRMYRQLILR------------HCPPDVVTFSSLI 363

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           DG C+ G + +   ++  + + + +  V  F+ +I   CK      A ++  +L+ +  +
Sbjct: 364 DGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDI 423

Query: 312 A-DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           A     YN +I  L K G++ + N ++  M+E GC  D  T+  L+I    K
Sbjct: 424 APQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMK 475



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 28/256 (10%)

Query: 131 INANTLLCKKTKLVEANRLLELMM-QRGLNPVIFTYTPLLNGYCL-VGKVNVAIALFDSM 188
           I+    LC+  +  +A +L + MM Q G  P    ++  + G C   G ++ A  L    
Sbjct: 112 IHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFS-FVAGSCTNAGLLDAASTLLTKG 170

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG--------------------- 227
           +R G   + ++Y+ L+N    +   ++A+ +    I +G                     
Sbjct: 171 SRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGN 230

Query: 228 FKK---IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-CELFVEIFN 283
           F+K   +   M      P+T T NI +DGLC+   V +  E+   L+    C      + 
Sbjct: 231 FQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYT 290

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           S+I G CK G  E A  ++N +       + V YN+LI+  GK   ++    +   +   
Sbjct: 291 SVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILR 350

Query: 344 GCALDVDTFNTLMISF 359
            C  DV TF++L+  +
Sbjct: 351 HCPPDVVTFSSLIDGY 366


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 148/345 (42%), Gaps = 29/345 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  ++N L+K  C  G I+DA QL  +MA+    P+V T   ++ G      +   +KL 
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLL 308

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EM     +       N   Y S+I  LC +  V     +  +M   G+  +  +     
Sbjct: 309 SEMAARGLEL------NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVM 362

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+K  L  A    + M +RGL     TYT L+NG C  G++  A  +   M  KG  
Sbjct: 363 SGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  +Y+VLI+GYCK   + EA  V  +M+               V P   T     DGL
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQK------------RVTPNVVTYTALSDGL 470

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G V    EL   +     EL +  +NSLI G CK G  E A      +    L  DV
Sbjct: 471 CKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             Y  +I AL +  ++ + + LL  M + G    + T+N LM  F
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 169/347 (48%), Gaps = 26/347 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+  ++ G+C    +  A +L+ +MA  G   N     ++I  L   G ++  ++
Sbjct: 282 PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVR 341

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           + ++MV      G +    VF   +++ G C+   +   ++ F EM+ +G+ A+ +    
Sbjct: 342 VVEDMVM----HGVVLDAAVFT--TVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTA 395

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC+  +L EA R+L+ M  +GL+    TYT L++GYC VGK+  A  + + M +K 
Sbjct: 396 LINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKR 455

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+V +Y+ L +G CK  +V  A  +  EM   G +         N+    FT N  I+
Sbjct: 456 VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE--------LNI----FTYNSLIN 503

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK G++ + M     ++ +  +  V  + ++I   C+    + A  L  ++  K +  
Sbjct: 504 GLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP 563

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +V YN+L++     G+++    LL  M E     +  T+N+LM  +
Sbjct: 564 TIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQY 610



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 148/337 (43%), Gaps = 26/337 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +LI G C  G +++A +++++M   G   +  T   LI G  + G M     +H +
Sbjct: 391 VTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNK 450

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV           PNV  Y +L DGLCK   V    +L  EM  KG+  N          
Sbjct: 451 MVQKR------VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLING 504

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   L +A R +  M + GL P ++TYT ++   C   +++ A +L   M  KG  P 
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+VL+NG+C +  VE            G K++   M   N+ P T T N  +   C 
Sbjct: 565 IVTYNVLMNGFCMSGRVE------------GGKRLLEWMLEKNIHPNTTTYNSLMKQYCI 612

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             ++    E++  +           +N LI+G CK    + A    +++  K       +
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASS 672

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           YN LI  L K+ +  +   L   M +     + D +N
Sbjct: 673 YNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYN 709



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 153/346 (44%), Gaps = 32/346 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+   F +++ GFC +G++  A     +M   G   +  T   LI GL R G +    ++
Sbjct: 353 LDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERV 412

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM---EMKDKGINANTL-- 136
            QEM +   D   +       Y  LIDG CK   V +  + F+   +M  K +  N +  
Sbjct: 413 LQEMEDKGLDVDAV------TYTVLIDGYCK---VGKMTEAFLVHNKMVQKRVTPNVVTY 463

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LCK+  +  AN LL  M  +GL   IFTY  L+NG C  G +  A+     M  
Sbjct: 464 TALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDE 523

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  PDV++Y+ +I   C++  ++ A ++ +EM+  G K            P   T N+ 
Sbjct: 524 AGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIK------------PTIVTYNVL 571

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           ++G C +G V     L   +   N       +NSL++  C     +  +E++  +  + +
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEV 631

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V +   YNILI    K   +K+  Y    M E G  L   ++N L+
Sbjct: 632 VPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALI 677



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 51/226 (22%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T+NSLI G C  GN+  A + +  M   G +P+V T  T+I  L ++  ++    L
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            QEM++      GI KP +  Y  L++G C    V+  K L   M +K I+ NT      
Sbjct: 553 LQEMLDK-----GI-KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSL 606

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV------------------ 175
               C +  +     + + M+ + + P   TY  L+ G+C                    
Sbjct: 607 MKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGF 666

Query: 176 -----------------GKVNVAIALFDSMARKGFM--PDVFSYSV 202
                             K   A  LF+ M ++     PDV+++ +
Sbjct: 667 RLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYI 712


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 170/356 (47%), Gaps = 36/356 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQL----------VKKMATFGCRPNVTTCDTLITGLRRTGN 74
           V++N+++KG CM     D  +L          + +M   GC P++    T+I G+ + G+
Sbjct: 214 VSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGH 273

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGIN 132
             +      ++++ M  +G   KPNV CY +++ GLC     ++ +DL  EM  +D  ++
Sbjct: 274 HEVA----NDILSRMPSYG--LKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLD 327

Query: 133 ANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
             T        C+   +     LLE M++ G  P + TYT ++NG+C  G V+ A+ L  
Sbjct: 328 DVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLK 387

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
           +M+  G  P+  SY++++ G C+     +A  +   MI  G             +P   T
Sbjct: 388 NMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQG------------CLPNPVT 435

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  I+ +CK G   + +EL   + ++ C   +  ++++I G  K G  E A EL N + 
Sbjct: 436 FNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMI 495

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            K +  + + Y+ +  AL +EG+  K   +  S+++     D   +N ++ S  ++
Sbjct: 496 NKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKR 551



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 153/350 (43%), Gaps = 53/350 (15%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL----RRTGNMNLTLKLH 82
           + ++I G C +G+   A+ ++ +M ++G +PNV   +T++ GL    R     +L  ++ 
Sbjct: 261 YATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMF 320

Query: 83  QE---------------------------MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL 115
           QE                           ++  M + G I  P+V  Y ++I+G CK+ L
Sbjct: 321 QEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCI--PDVITYTTVINGFCKEGL 378

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           VD+   L   M   G   NT+        LC+  + V+A  L+  M+Q+G  P   T+  
Sbjct: 379 VDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNT 438

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L+N  C  G    AI L   M   G  PD+ SYS +I+G  K    EEA+ +   MI  G
Sbjct: 439 LINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKG 498

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                       + P T   +     L + G   +++++F +++ +       ++N++I 
Sbjct: 499 ------------ITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVIS 546

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
             CK    + A + F  +     + +   Y ILI  L  EG +++   LL
Sbjct: 547 SLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLL 596



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 136/353 (38%), Gaps = 55/353 (15%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N  T+  +++  C  G I DA  ++ +M   GC      C  ++    R G     ++
Sbjct: 105 PPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVR 164

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
             Q +++  G           C  +L  G C         +L +          + +C++
Sbjct: 165 ALQ-VLHAKG-----------C--TLDSGNC---------NLVV----------SAICEQ 191

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR---------- 190
             + E   LL  +   G  P I +Y  +L G C+  + +    L   M R          
Sbjct: 192 GCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPE 251

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  PD+  Y+ +I+G CK+ + E A ++   M   G K            P     N  
Sbjct: 252 HGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLK------------PNVVCYNTV 299

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           + GLC      E  +L   +   +C L    FN L+   C+ G+ +   EL  ++     
Sbjct: 300 LKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGC 359

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + DV+ Y  +I+   KEG + +   LL +M   GC  +  ++  ++    + E
Sbjct: 360 IPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAE 412



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 33/201 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFN+LI   C +G    A +L+K+M   GC P++ +  T+I GL + G     L+L 
Sbjct: 432 NPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELL 491

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             M+N      GI  PN   Y S+   L ++   D+   +F  ++D  + ++  L     
Sbjct: 492 NVMIN-----KGI-TPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAAL----- 540

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                                 Y  +++  C   + + AI  F  M   G MP+  +Y++
Sbjct: 541 ----------------------YNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTI 578

Query: 203 LINGYCKNFNVEEAMNVSREM 223
           LI G      V EA ++  E+
Sbjct: 579 LIRGLASEGLVREAQDLLSEL 599



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 111/293 (37%), Gaps = 74/293 (25%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +  +A R L+     G    +  Y  ++ GYC  G+V  A  L  ++      P+
Sbjct: 54  LCAAGRTADAARALD---TAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP---VPPN 107

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILN--------------------GFKKIFNEMK 236
            ++Y  ++   C    + +A+ V  EM L                     GF+     ++
Sbjct: 108 AYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQ 167

Query: 237 LCNV---VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC------------------ 275
           + +      ++  CN+ +  +C+ G V E +EL   L    C                  
Sbjct: 168 VLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAK 227

Query: 276 ------ELFVE---------------------IFNSLIRGCCKFGIFEIASELFNKLSCK 308
                 EL VE                     ++ ++I G CK G  E+A+++ +++   
Sbjct: 228 RWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSY 287

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            L  +VV YN ++  L    + ++   LL  M +  C LD  TFN L+  F Q
Sbjct: 288 GLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQ 340


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 148/345 (42%), Gaps = 29/345 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  ++N L+K  C  G I+DA QL  +MA+    P+V T   ++ G      +   +KL 
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLL 308

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EM     +       N   Y S+I  LC +  V     +  +M   G+  +  +     
Sbjct: 309 SEMAARGLEL------NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVM 362

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+K  L  A    + M +RGL     TYT L+NG C  G++  A  +   M  KG  
Sbjct: 363 SGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  +Y+VLI+GYCK   + EA  V  +M+               V P   T     DGL
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQK------------RVTPNVVTYTALSDGL 470

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G V    EL   +     EL +  +NSLI G CK G  E A      +    L  DV
Sbjct: 471 CKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             Y  +I AL +  ++ + + LL  M + G    + T+N LM  F
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 169/347 (48%), Gaps = 26/347 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+  ++ G+C    +  A +L+ +MA  G   N     ++I  L   G ++  ++
Sbjct: 282 PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVR 341

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           + ++MV      G +    VF   +++ G C+   +   ++ F EM+ +G+ A+ +    
Sbjct: 342 VVEDMVM----HGVVLDAAVFT--TVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTA 395

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC+  +L EA R+L+ M  +GL+    TYT L++GYC VGK+  A  + + M +K 
Sbjct: 396 LINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKR 455

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+V +Y+ L +G CK  +V  A  +  EM   G +         N+    FT N  I+
Sbjct: 456 VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE--------LNI----FTYNSLIN 503

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK G++ + M     ++ +  +  V  + ++I   C+    + A  L  ++  K +  
Sbjct: 504 GLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP 563

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +V YN+L++     G+++    LL  M E     +  T+N+LM  +
Sbjct: 564 TIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQY 610



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 149/339 (43%), Gaps = 26/339 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+ +LI G C  G +++A +++++M   G   +  T   LI G  + G M     +H
Sbjct: 389 DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVH 448

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +MV           PNV  Y +L DGLCK   V    +L  EM  KG+  N        
Sbjct: 449 NKMVQKR------VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLI 502

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK   L +A R +  M + GL P ++TYT ++   C   +++ A +L   M  KG  
Sbjct: 503 NGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIK 562

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P + +Y+VL+NG+C +  VE            G K++   M   N+ P T T N  +   
Sbjct: 563 PTIVTYNVLMNGFCMSGRVE------------GGKRLLEWMLEKNIHPNTTTYNSLMKQY 610

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C   ++    E++  +           +N LI+G CK    + A    +++  K      
Sbjct: 611 CIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTA 670

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
            +YN LI  L K+ +  +   L   M +     + D +N
Sbjct: 671 SSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYN 709



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 153/346 (44%), Gaps = 32/346 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+   F +++ GFC +G++  A     +M   G   +  T   LI GL R G +    ++
Sbjct: 353 LDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERV 412

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM---EMKDKGINANTL-- 136
            QEM +   D   +       Y  LIDG CK   V +  + F+   +M  K +  N +  
Sbjct: 413 LQEMEDKGLDVDAV------TYTVLIDGYCK---VGKMTEAFLVHNKMVQKRVTPNVVTY 463

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LCK+  +  AN LL  M  +GL   IFTY  L+NG C  G +  A+     M  
Sbjct: 464 TALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDE 523

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  PDV++Y+ +I   C++  ++ A ++ +EM+  G K            P   T N+ 
Sbjct: 524 AGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIK------------PTIVTYNVL 571

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           ++G C +G V     L   +   N       +NSL++  C     +  +E++  +  + +
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEV 631

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V +   YNILI    K   +K+  Y    M E G  L   ++N L+
Sbjct: 632 VPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALI 677



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 51/226 (22%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T+NSLI G C  GN+  A + +  M   G +P+V T  T+I  L ++  ++    L
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            QEM++      GI KP +  Y  L++G C    V+  K L   M +K I+ NT      
Sbjct: 553 LQEMLDK-----GI-KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSL 606

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV------------------ 175
               C +  +     + + M+ + + P   TY  L+ G+C                    
Sbjct: 607 MKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGF 666

Query: 176 -----------------GKVNVAIALFDSMARKGFM--PDVFSYSV 202
                             K   A  LF+ M ++     PDV+++ +
Sbjct: 667 RLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYI 712


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 150/329 (45%), Gaps = 49/329 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +LI  +     +  A+ +  +M   GCRPN  T   L+ GL + GN++   +++ +
Sbjct: 294 VTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAK 353

Query: 85  MV----NGMGDF------GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++    +   DF           PNV  YG+L+DGLCK   VD                 
Sbjct: 354 LIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH---------------- 397

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
                      A+ LL+ M+  G  P    Y  L++G+C  GK++ A  +F  M + G++
Sbjct: 398 -----------AHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYL 446

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P V +Y+ LI+   K+  ++ AM V  +M+ +            +  P   T    IDGL
Sbjct: 447 PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKD------------SCTPNVVTYTAMIDGL 494

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G   + ++L   +E   C   V  + +LI G  K G  +++ +LF ++S K    + 
Sbjct: 495 CRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 554

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEEN 343
           V Y +LI+ L   G + K   LL  M++ 
Sbjct: 555 VTYRVLINHLCAAGLLDKARLLLGEMKQT 583



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 162/382 (42%), Gaps = 53/382 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V   +  +  C  G    A QL+K+M   G  P+ +T   +IT L     +     L
Sbjct: 186 LNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLL 245

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            QEM        G+  P+V+ Y  LID  CK  L++Q + LF EM+  G +   +     
Sbjct: 246 FQEM-----KMVGV-TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTAL 299

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA---- 189
                K  ++ +AN +   M+  G  P   TY  L++G C  G ++ A  ++  +     
Sbjct: 300 IHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSD 359

Query: 190 ------------RKGFMPDVFSYSVLINGYCKNFNVEEAM--------------NVSREM 223
                       R    P+V +Y  L++G CK   V+ A               ++  + 
Sbjct: 360 SADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDA 419

Query: 224 ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           +++GF         +++F +M  C  +P   T    ID + K+G +   M++   +   +
Sbjct: 420 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 479

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V  + ++I G C+ G  E A +L + +  K    +VV Y  LI  LGK G+I    
Sbjct: 480 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 539

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L   M   GC+ +  T+  L+
Sbjct: 540 DLFTQMSRKGCSPNYVTYRVLI 561



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 155/333 (46%), Gaps = 37/333 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+ G C    +  A +L+  M + GC PN    D LI G  + G ++      
Sbjct: 378 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSA---- 433

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QE+   M   G  Y P+V  Y SLID + KD  +D    +  +M       N +      
Sbjct: 434 QEVFLQMTKCG--YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMI 491

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +  +A +LL LM ++G +P + TYT L++G    GK+++++ LF  M+RKG  
Sbjct: 492 DGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCS 551

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK-------IFN 233
           P+  +Y VLIN  C    +++A  +  EM               + GF K       I  
Sbjct: 552 PNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILE 611

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT-LEI-SNCELFVEIFNSLIRGCCK 291
           EM+    VP      + ID   K G +   MEL    +E+ S+ +   +++ SLI+  C 
Sbjct: 612 EMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCL 671

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
               E A  L+++++ +  V ++  +  LI  L
Sbjct: 672 ASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGL 704



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 161/387 (41%), Gaps = 59/387 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+ GF  +  +    +++  M T GC PN +  ++L+       +     KL 
Sbjct: 76  NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL- 134

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR------LVDQTKDLFMEM--------KD 128
              +N M   G    P    Y   I  +C         L+D  + ++ EM        K 
Sbjct: 135 ---LNRMTTCGC--PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKV 189

Query: 129 KGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
              N    LC   K  +A +L++ MM++G  P   TY+ ++   C   KV  A  LF  M
Sbjct: 190 NVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEM 249

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---- 230
              G  PDV++Y++LI+ +CK   +E+A  +  EM              +++ + K    
Sbjct: 250 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQV 309

Query: 231 -----IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL----EISNCELF--- 278
                IF+ M      P   T    +DGLCK G++ +  E++  L    + ++ + +   
Sbjct: 310 PQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPC 369

Query: 279 ---------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
                    V  + +L+ G CK    + A EL + +       + + Y+ LI    K G+
Sbjct: 370 EDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGK 429

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           I     + L M + G    V T+ +L+
Sbjct: 430 IDSAQEVFLQMTKCGYLPSVHTYTSLI 456



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 94/241 (39%), Gaps = 51/241 (21%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ ++I G C  G    A +L+  M   GC PNV T   LI GL + G ++L+L L 
Sbjct: 483 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 542

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-------KGINANT 135
            +M            PN   Y  LI+ LC   L+D+ + L  EMK        +G     
Sbjct: 543 TQMSRKGC------SPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAI 596

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTY------------------------------ 165
               K+  + +  +LE M   G  P+   Y                              
Sbjct: 597 QGFSKS-FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSV 655

Query: 166 -------TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
                    L+   CL  +V  A  L+  M R+GF+P++  +  LI G  +    +EA+ 
Sbjct: 656 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQ 715

Query: 219 V 219
           +
Sbjct: 716 L 716



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 124/343 (36%), Gaps = 44/343 (12%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK- 80
           ++  T        C EG   DA  ++++      + +   C  +I+GL      +  +  
Sbjct: 8   MDRFTVGCFAHALCKEGRWADALDMIEREDF---KLDTVLCTHMISGLMEASYFDEAMSF 64

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           LH+   N          PNV  Y +L+ G  K                           K
Sbjct: 65  LHRMRCNSC-------IPNVVTYRTLLSGFLK---------------------------K 90

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            +L    R++ +MM  G NP    +  L++ YC       A  L + M   G  P    Y
Sbjct: 91  KQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVY 150

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           ++ I   C          +    +L+  +KI+ EM   N V        F   LC  G  
Sbjct: 151 NIFIGSICGQ------EKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKF 204

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            +  +L   +           ++ +I   C     E A  LF ++    +  DV  Y IL
Sbjct: 205 DKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTIL 264

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           I +  K G I++  +L   M   GC+  V T+  L+ ++L+ +
Sbjct: 265 IDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAK 307


>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 602

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 24/345 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            +  + I+  C  G + +A      +   G RP V T +       + G  +L  KL++ 
Sbjct: 156 ASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYE- 214

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCK 139
              GM + G     ++   G LI   C D  V +  ++  +  + G+       N L+  
Sbjct: 215 ---GMMETGVQKDVDIETVGYLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISG 271

Query: 140 KTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K    +R+LEL   M+ +  NP IFTY  ++NG+C       A  +F+++  +G+ PD
Sbjct: 272 FCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPD 331

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           +  Y+ LI+G+CK   +E+A  +  EMI  GF            +P  ++ N  I G CK
Sbjct: 332 MVMYTTLIHGFCKMGQLEDASKLWFEMIDKGF------------LPNEYSYNTLIYGFCK 379

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G++ E M+L+  +  S  +      N+LI G C  G  + A + F ++ CKN+V DV+ 
Sbjct: 380 IGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVIT 439

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           YN LI    +EG++ +   LL  ++  G      ++  L+    Q
Sbjct: 440 YNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQ 484



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 164/359 (45%), Gaps = 56/359 (15%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T   LI+ FC +  +  A +++++    G  P     + LI+G  +  N +  L+L   M
Sbjct: 229 TVGYLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTM 288

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           +    +      P++F Y  +I+G CK+ +  Q  ++F  +KD                 
Sbjct: 289 IVKNRN------PDIFTYQEIINGFCKNWMTLQAFEVFNALKD----------------- 325

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
                     RG  P +  YT L++G+C +G++  A  L+  M  KGF+P+ +SY+ LI 
Sbjct: 326 ----------RGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIY 375

Query: 206 GYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVP 242
           G+CK  N++EAM + ++M+ +G+K+                        F EM   N+V 
Sbjct: 376 GFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVC 435

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T N  I G C+ G VL+  +L   L+    +     +  LI+  C+ G  + A E++
Sbjct: 436 DVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMW 495

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           N +  + L   V   + +I  L ++G + +    L++M ++      +TF  L+ S +Q
Sbjct: 496 NDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSLIQ 554



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 139/304 (45%), Gaps = 38/304 (12%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P ND  FN LI GFC E N     +LV  M      P++ T   +I G  +     +TL+
Sbjct: 260 PCNDA-FNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNW---MTLQ 315

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANT 135
              E+ N + D G  Y P++  Y +LI G CK   ++    L+ EM DKG      + NT
Sbjct: 316 AF-EVFNALKDRG--YAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNT 372

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+   CK   L EA +L + M+  G      +   L+ G CL G+ + A   F  M  K 
Sbjct: 373 LIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKN 432

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------K 229
            + DV +Y+ LI G+C+   V ++ ++ +E+   G                        K
Sbjct: 433 IVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAK 492

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
           +++N+M    + P   T +  I GLC+ G+V+E ME   T+  SN +   E F  LI+  
Sbjct: 493 EMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSL 552

Query: 290 CKFG 293
            + G
Sbjct: 553 IQIG 556



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 15/234 (6%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
            L A   F +   R Y P + V + +LI GFC  G + DAS+L  +M   G  PN  + +
Sbjct: 313 TLQAFEVFNALKDRGYAP-DMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYN 371

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           TLI G  + GN++  +KL+++M+    D G  YK       +LI GLC     D+  D F
Sbjct: 372 TLIYGFCKIGNLDEAMKLYKKML----DSG--YKETTLSCNTLILGLCLHGRTDEAYDFF 425

Query: 124 MEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EM  K      I  NTL+   C++ K++++  LL+ +  +GL P   +Y  L+   C +
Sbjct: 426 REMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQL 485

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           G V  A  +++ M  +G  P V +   +I+G C+   V E M     M+ +  K
Sbjct: 486 GSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLK 539



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 37/210 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ ++N+LI GFC  GN+ +A +L KKM   G +    +C+TLI GL   G  +      
Sbjct: 366 NEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFF 425

Query: 83  QEM---------------VNGMGDFGGIYK--------------PNVFCYGSLIDGLCKD 113
           +EM               + G    G + +              P+   Y  LI  LC+ 
Sbjct: 426 REMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQL 485

Query: 114 RLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTY 165
             V + K+++ +M ++G+           + LC++  +VE    L  M++  L P   T+
Sbjct: 486 GSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETF 545

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             L+     +GK  +     DS   K   P
Sbjct: 546 YKLIQSLIQIGKELLLELKMDSKTSKEVYP 575



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           PE  +   +I  +C+ G V E +  F  L+ +    +VE +N   + C KFG  ++  +L
Sbjct: 153 PEPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKL 212

Query: 302 FNKLSCKNLVADV----VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           +  +    +  DV    V Y  LI A   + ++ +   +L    E+G     D FN L+ 
Sbjct: 213 YEGMMETGVQKDVDIETVGY--LIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLIS 270

Query: 358 SF 359
            F
Sbjct: 271 GF 272


>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 24/345 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            +  + I+  C  G + +A      +   G RP V T +       + G  +L  KL++ 
Sbjct: 192 ASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYE- 250

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCK 139
              GM + G     ++   G LI   C D  V +  ++  +  + G+       N L+  
Sbjct: 251 ---GMMETGVQKDVDIETVGYLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISG 307

Query: 140 KTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K    +R+LEL   M+ +  NP IFTY  ++NG+C       A  +F+++  +G+ PD
Sbjct: 308 FCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPD 367

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           +  Y+ LI+G+CK   +E+A  +  EMI  GF            +P  ++ N  I G CK
Sbjct: 368 MVMYTTLIHGFCKMGQLEDASKLWFEMIDKGF------------LPNEYSYNTLIYGFCK 415

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G++ E M+L+  +  S  +      N+LI G C  G  + A + F ++ CKN+V DV+ 
Sbjct: 416 IGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVIT 475

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           YN LI    +EG++ +   LL  ++  G      ++  L+    Q
Sbjct: 476 YNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQ 520



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 164/359 (45%), Gaps = 56/359 (15%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T   LI+ FC +  +  A +++++    G  P     + LI+G  +  N +  L+L   M
Sbjct: 265 TVGYLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTM 324

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           +    +      P++F Y  +I+G CK+ +  Q  ++F  +KD                 
Sbjct: 325 IVKNRN------PDIFTYQEIINGFCKNWMTLQAFEVFNALKD----------------- 361

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
                     RG  P +  YT L++G+C +G++  A  L+  M  KGF+P+ +SY+ LI 
Sbjct: 362 ----------RGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIY 411

Query: 206 GYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLCNVVP 242
           G+CK  N++EAM + ++M+ +G+K+                        F EM   N+V 
Sbjct: 412 GFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVC 471

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T N  I G C+ G VL+  +L   L+    +     +  LI+  C+ G  + A E++
Sbjct: 472 DVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMW 531

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           N +  + L   V   + +I  L ++G + +    L++M ++      +TF  L+ S +Q
Sbjct: 532 NDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSLIQ 590



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 139/304 (45%), Gaps = 38/304 (12%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P ND  FN LI GFC E N     +LV  M      P++ T   +I G  +     +TL+
Sbjct: 296 PCNDA-FNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNW---MTLQ 351

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANT 135
              E+ N + D G  Y P++  Y +LI G CK   ++    L+ EM DKG      + NT
Sbjct: 352 AF-EVFNALKDRG--YAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNT 408

Query: 136 LL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+   CK   L EA +L + M+  G      +   L+ G CL G+ + A   F  M  K 
Sbjct: 409 LIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKN 468

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------K 229
            + DV +Y+ LI G+C+   V ++ ++ +E+   G                        K
Sbjct: 469 IVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAK 528

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
           +++N+M    + P   T +  I GLC+ G+V+E ME   T+  SN +   E F  LI+  
Sbjct: 529 EMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSL 588

Query: 290 CKFG 293
            + G
Sbjct: 589 IQIG 592



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 15/234 (6%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
            L A   F +   R Y P + V + +LI GFC  G + DAS+L  +M   G  PN  + +
Sbjct: 349 TLQAFEVFNALKDRGYAP-DMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYN 407

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           TLI G  + GN++  +KL+++M+    D G  YK       +LI GLC     D+  D F
Sbjct: 408 TLIYGFCKIGNLDEAMKLYKKML----DSG--YKETTLSCNTLILGLCLHGRTDEAYDFF 461

Query: 124 MEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            EM  K      I  NTL+   C++ K++++  LL+ +  +GL P   +Y  L+   C +
Sbjct: 462 REMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQL 521

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
           G V  A  +++ M  +G  P V +   +I+G C+   V E M     M+ +  K
Sbjct: 522 GSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLK 575



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           PE  +   +I  +C+ G V E +  F  L+ +    +VE +N   + C KFG  ++  +L
Sbjct: 189 PEPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKL 248

Query: 302 FNKLSCKNLVADV----VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           +  +    +  DV    V Y  LI A   + ++ +   +L    E+G     D FN L+ 
Sbjct: 249 YEGMMETGVQKDVDIETVGY--LIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLIS 306

Query: 358 SF 359
            F
Sbjct: 307 GF 308


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 172/384 (44%), Gaps = 64/384 (16%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K++ A   F       + P + VT+ +LI G+C  GN+ +A ++ +KM      P++   
Sbjct: 514 KMIEAEETFNRMKELGFEP-DGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELY 572

Query: 63  DTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
           ++LI GL ++      + L  EM + G+        PNV  YG+LI G C +  +D+   
Sbjct: 573 NSLIGGLFKSKKTREVMDLLSEMCLKGLS-------PNVVTYGTLIAGWCDEGRLDKAFT 625

Query: 122 LFMEMKDKGINANTLLCKKT--------KLVEANRLLELMM------------------- 154
            + +M +KG   N ++C K         ++ EAN LL+ M+                   
Sbjct: 626 AYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADD 685

Query: 155 -----QRGLN-----------PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
                Q+  +           P    Y   + G C  GKV+ A  +F S+  +GF PD F
Sbjct: 686 GNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNF 745

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y  LI+GY    NV +A ++  EM+  G            + P   T N  I+GLCK+G
Sbjct: 746 TYCTLIHGYSAAGNVNDAFSLRDEMLKRG------------LAPNIITYNALINGLCKSG 793

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           ++    +LF  L +      V  +N LI G CK G    A +L NK+  + +   ++ Y+
Sbjct: 794 NLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYS 853

Query: 319 ILIHALGKEGQIKKENYLLLSMEE 342
            LI+   K+G + K   LL  M E
Sbjct: 854 ALIYGFCKQGDMGKATNLLDEMRE 877



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 161/336 (47%), Gaps = 26/336 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L++  +  LI G+C    + DA +L  +M   G R N+  C+ LI G  + G ++   +L
Sbjct: 322 LDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERL 381

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
              MV+   D     +P  + Y +L+DG C++ LV +   ++ EM   GI +N +     
Sbjct: 382 LMRMVDW--DL----EPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSL 435

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC+     +A  +  LM++RG+ P   +Y  LL+    +G+   A+AL++ +  +G+
Sbjct: 436 LKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGY 495

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
               ++++ +ING+CK   + EA            ++ FN MK     P+  T    IDG
Sbjct: 496 GRSTYAFNTMINGFCKMEKMIEA------------EETFNRMKELGFEPDGVTYRTLIDG 543

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK G+V E  ++   +E       +E++NSLI G  K        +L +++  K L  +
Sbjct: 544 YCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPN 603

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           VV Y  LI     EG++ K       M E G A +V
Sbjct: 604 VVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNV 639



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 145/332 (43%), Gaps = 49/332 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI G+C EG +  A      M   G  PNV  C  +++ L R G ++    L 
Sbjct: 603 NVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLL 662

Query: 83  QEMVN-----GMGDFGGIYK------------------------PNVFCYGSLIDGLCKD 113
           Q+MVN       G F  ++K                        PN   Y   I GLCK 
Sbjct: 663 QKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKS 722

Query: 114 RLVDQTKDLFMEMKDKGINAN-----TLLCKKTKLVEANRLLEL---MMQRGLNPVIFTY 165
             VD  K +F  +  +G + +     TL+   +     N    L   M++RGL P I TY
Sbjct: 723 GKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITY 782

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
             L+NG C  G ++ A  LFD +  KG  P+V SY++LI+GYCKN N  EA+++  +M+ 
Sbjct: 783 NALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLK 842

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
            G            + P   T +  I G CK G + +   L   +     +  +  F  L
Sbjct: 843 EG------------ISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAKFVKL 890

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           + G  K G  +  ++L N +      A V+++
Sbjct: 891 VEGHVKCGEVKKIAKLHNMMHITIPCAGVISH 922



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 175/377 (46%), Gaps = 50/377 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
             F+ ++K +C +G I++A  +   M   GC P++ +C+ L++ L R G  +  + ++  
Sbjct: 149 TVFDMILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDH 208

Query: 85  ---------------MVNGMGDFGGI--------------YKPNVFCYGSLIDGLCKDRL 115
                          MVN     G +              ++ NV  Y SLIDG      
Sbjct: 209 INRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGD 268

Query: 116 VDQTKDLFMEMKDKGINAN----TLL----CKKTKLVEANRLL-ELMMQRGLNPVIFTYT 166
           +++ + +   M ++GI  N    TLL    C++ KL EA ++L E+    G+    + Y 
Sbjct: 269 MERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYG 328

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            L++GYC V K++ A+ L D M   G   ++F  + LINGYCKN  V EA          
Sbjct: 329 VLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEA---------- 378

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
             +++   M   ++ PE+++ +  +DG C+ G V + + ++  +     +  V   NSL+
Sbjct: 379 --ERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLL 436

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
           +G C+ G FE A  +++ +  + +  D V+Y  L+  L K G+  +   L   +   G  
Sbjct: 437 KGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYG 496

Query: 347 LDVDTFNTLMISFLQKE 363
                FNT++  F + E
Sbjct: 497 RSTYAFNTMINGFCKME 513



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 169/369 (45%), Gaps = 36/369 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN VT+NSLI G    G++  A  ++K M   G   N  T   LI G  R   +    K+
Sbjct: 251 LNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKV 310

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--- 138
            +EM    G        + + YG LIDG C+   +D    L  EM + G+  N  +C   
Sbjct: 311 LREMERSEG-----MVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNAL 365

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  ++ EA RLL  M+   L P  ++Y+ L++G+C  G V  AI++++ M R G 
Sbjct: 366 INGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGI 425

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG---------------FK--KIFNEMK 236
             +V +++ L+ G C+    E+A++V   M+  G               FK  + F  + 
Sbjct: 426 QSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALA 485

Query: 237 LCNVV------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           L N +        T+  N  I+G CK   ++E  E F  ++    E     + +LI G C
Sbjct: 486 LWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYC 545

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           K G  E A ++  K+  + ++  +  YN LI  L K  + ++   LL  M   G + +V 
Sbjct: 546 KLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVV 605

Query: 351 TFNTLMISF 359
           T+ TL+  +
Sbjct: 606 TYGTLIAGW 614



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 121/265 (45%), Gaps = 21/265 (7%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ 155
           ++PNV  +  L+  L + R+ D+T+    E+     N        + LV  N L+ +   
Sbjct: 90  FRPNVNSHCKLVHILSRARMYDETRSYLNELVTPSKN------NYSSLVVWNELVRVFED 143

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
              +P +F    +L  YC  G +  A+ +FD+M + G +P + S + L++   +      
Sbjct: 144 FKFSPTVFDM--ILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSN 201

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A+ V            ++ +    +VP+ FTC+I ++  CK+G V   ++    ++    
Sbjct: 202 AILV------------YDHINRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGF 249

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           EL V  +NSLI GC   G  E A  +   +  + ++ + V   +LI    ++ ++++   
Sbjct: 250 ELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEK 309

Query: 336 LLLSMEEN-GCALDVDTFNTLMISF 359
           +L  ME + G  LD   +  L+  +
Sbjct: 310 VLREMERSEGMVLDEYAYGVLIDGY 334


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 148/345 (42%), Gaps = 29/345 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  ++N L+K  C  G I+DA QL  +MA+    P+V T   ++ G      +   +KL 
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLL 308

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EM     +       N   Y S+I  LC +  V     +  +M   G+  +  +     
Sbjct: 309 SEMAARGLEL------NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVM 362

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+K  L  A    + M +RGL     TYT L+NG C  G++  A  +   M  KG  
Sbjct: 363 SGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D  +Y+VLI+GYCK   + EA  V  +M+               V P   T     DGL
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQK------------RVTPNVVTYTALSDGL 470

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G V    EL   +     EL +  +NSLI G CK G  E A      +    L  DV
Sbjct: 471 CKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             Y  +I AL +  ++ + + LL  M + G    + T+N LM  F
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 169/347 (48%), Gaps = 26/347 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+  ++ G+C    +  A +L+ +MA  G   N     ++I  L   G ++  ++
Sbjct: 282 PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVR 341

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           + ++MV      G +    VF   +++ G C+   +   ++ F EM+ +G+ A+ +    
Sbjct: 342 VVEDMVM----HGVVLDAAVFT--TVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTA 395

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC+  +L EA R+L+ M  +GL+    TYT L++GYC VGK+  A  + + M +K 
Sbjct: 396 LINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKR 455

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+V +Y+ L +G CK  +V  A  +  EM   G +         N+    FT N  I+
Sbjct: 456 VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE--------LNI----FTYNSLIN 503

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK G++ + M     ++ +  +  V  + ++I   C+    + A  L  ++  K +  
Sbjct: 504 GLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP 563

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +V YN+L++     G+++    LL  M E     +  T+N+LM  +
Sbjct: 564 TIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQY 610



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 149/337 (44%), Gaps = 26/337 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +LI G C  G +++A +++++M   G   +  T   LI G  + G M     +H +
Sbjct: 391 VTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNK 450

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV           PNV  Y +L DGLCK   V    +L  EM  KG+  N          
Sbjct: 451 MVQKR------VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLING 504

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK   L +A R +  M + GL P ++TYT ++   C   +++ A +L   M  KG  P 
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+VL+NG+C +  VE            G K++   M   N+ P T T N  +   C 
Sbjct: 565 IVTYNVLMNGFCMSGRVE------------GGKRLLEWMLEKNIHPNTTTYNSLMKQYCI 612

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
             ++    E++  +           +N LI+G CK    + A    +++  K       +
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASS 672

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
           YN LI  L K+ +  +   L   M ++    + D +N
Sbjct: 673 YNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYN 709



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 153/346 (44%), Gaps = 32/346 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+   F +++ GFC +G++  A     +M   G   +  T   LI GL R G +    ++
Sbjct: 353 LDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERV 412

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM---EMKDKGINANTL-- 136
            QEM +   D   +       Y  LIDG CK   V +  + F+   +M  K +  N +  
Sbjct: 413 LQEMEDKGLDVDAV------TYTVLIDGYCK---VGKMTEAFLVHNKMVQKRVTPNVVTY 463

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                 LCK+  +  AN LL  M  +GL   IFTY  L+NG C  G +  A+     M  
Sbjct: 464 TALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDE 523

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  PDV++Y+ +I   C++  ++ A ++ +EM+  G K            P   T N+ 
Sbjct: 524 AGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIK------------PTIVTYNVL 571

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           ++G C +G V     L   +   N       +NSL++  C     +  +E++  +  + +
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEV 631

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V +   YNILI    K   +K+  Y    M E G  L   ++N L+
Sbjct: 632 VPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALI 677



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 51/226 (22%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN  T+NSLI G C  GN+  A + +  M   G +P+V T  T+I  L ++  ++    L
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            QEM++      GI KP +  Y  L++G C    V+  K L   M +K I+ NT      
Sbjct: 553 LQEMLDK-----GI-KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSL 606

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV------------------ 175
               C +  +     + + M+ + + P   TY  L+ G+C                    
Sbjct: 607 MKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGF 666

Query: 176 -----------------GKVNVAIALFDSMARKGFM--PDVFSYSV 202
                             K   A  LF+ M +      PDV+++ +
Sbjct: 667 RLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYI 712


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 158/342 (46%), Gaps = 45/342 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EG+IR A  +   +  +G RP+V + 
Sbjct: 115 KYFKLVWGFYEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSF 174

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L   M        G+ +P+V+ Y  LI+GLCK+         
Sbjct: 175 NTLMNGYIRLGDLDEGFRLKSAM-----HASGV-QPDVYTYSVLINGLCKE--------- 219

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L+ G+C   +V++A+
Sbjct: 220 ------------------SKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAM 261

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK------------P 309

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L    + +LI G C+ G +  A ++ 
Sbjct: 310 DKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVL 369

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
            ++    L  D   Y ++I+   K+G +   + LL  M+ +G
Sbjct: 370 REMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 157/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
               D G  Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 129 ----DCG--YPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 183 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 243 TFTTLIAGHCKNRRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  E A E   ++  +N+  D VAY 
Sbjct: 291 DLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 351 ALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKK 394



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 14/185 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C    +  A ++ K+M +    P++ T +TLI GL + G+    LK  
Sbjct: 240 NGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD----LKQA 295

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            ++++ M   G   KP+   Y +LIDG CK+  ++   +    M  + I  + +      
Sbjct: 296 HDLIDEMSMKG--LKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALI 353

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ + ++A ++L  M+  GL P   TYT ++N +C  G V     L   M R G +
Sbjct: 354 SGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHV 413

Query: 195 PDVFS 199
           P V S
Sbjct: 414 PSVVS 418


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 170/356 (47%), Gaps = 30/356 (8%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           Y P  D  F S +   C   N+ DAS  L+ K + FGCR      + L++ L   G ++ 
Sbjct: 179 YSP--DARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHD 236

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
            + L +  +        +Y P+V+ +  +I G+C+   V +  +L   M + G + +T+ 
Sbjct: 237 VVALFERWIQDR-----VYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVT 291

Query: 137 -------LCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                  LC+  ++   + +L  + + G+  P + T+T +++GYC  GK+  A+A+++ M
Sbjct: 292 HNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 351

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
              G MP+  +Y+VLINGY K  ++  A+ V            + +M      P+  T +
Sbjct: 352 VASGIMPNTVTYNVLINGYGKVGDLGSAVEV------------YQQMTRLRCPPDVVTFS 399

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             IDG C+ G + + + ++  +     +  V  F+ +I   CK    + A  L N+L+ +
Sbjct: 400 SLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLR 459

Query: 309 -NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            ++      YN +I  L K G++ + N +   MEE GC  D  T+  L+I +  K 
Sbjct: 460 PDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKS 515



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 30/346 (8%)

Query: 3   KVLGALMAFGSFIR-RCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           +V   +  F  +I+ R Y P  DV +FN +IKG C  G ++ A +LV++M  FGC P+  
Sbjct: 233 RVHDVVALFERWIQDRVYSP--DVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTV 290

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T + ++ GL RT  ++   + H+ +     D  G+  PNV  + S+I G CK   ++   
Sbjct: 291 THNIIVDGLCRTNEVS---RGHEVLRRLQRD--GVCMPNVVTFTSVISGYCKAGKLEDAM 345

Query: 121 DLFMEMKDKGINANTLLC--------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            ++ +M   GI  NT+          K   L  A  + + M +    P + T++ L++GY
Sbjct: 346 AVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 405

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  G+++ A+ ++  MA+    P+V+++S++I+  CK    +EA+             + 
Sbjct: 406 CRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIC------------LL 453

Query: 233 NEMKL-CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           NE+ L  ++ P+ F  N  ID LCK G V E   +   +E   C      +  LI G C 
Sbjct: 454 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCM 513

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
                 A   F+++       D +  N  I  L K G   + ++++
Sbjct: 514 KSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVM 559



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 131/315 (41%), Gaps = 25/315 (7%)

Query: 57  PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
           P+  +C  +I  L R+G     L+L  +M    G     Y P+      L+       L+
Sbjct: 145 PSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYG-----YSPDARFLSFLVSSCTCANLL 199

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQ-RGLNPVIFTYTP 167
           D +  L  +  + G              L  + ++ +   L E  +Q R  +P ++++  
Sbjct: 200 DASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNV 259

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           ++ G C VG+V  A+ L + M   G  PD  +++++++G C+   V     V R +  +G
Sbjct: 260 VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDG 319

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                        +P   T    I G CK G + + M ++  +  S        +N LI 
Sbjct: 320 V-----------CMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLIN 368

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G  K G    A E++ +++      DVV ++ LI    + GQ+     +   M ++    
Sbjct: 369 GYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQP 428

Query: 348 DVDTFNTLMISFLQK 362
           +V TF+ ++ S  ++
Sbjct: 429 NVYTFSIIIHSLCKQ 443


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 159/330 (48%), Gaps = 28/330 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PLN VT+  L+ G C EG + +A  + + M   G R N     TLI G     N    L 
Sbjct: 366 PLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALS 425

Query: 81  LHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-- 137
           L  EM + GM       + +V  YG+LI GLC  + +D+ K L  +M + G+  N ++  
Sbjct: 426 LLSEMKDKGM-------ELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYT 478

Query: 138 -----C-KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                C K  K  EA  LL+ MM  G  P I TY  L++G C  G ++ AI+ F+ M   
Sbjct: 479 NIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDL 538

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+V +Y+ L++G CKN  +++A+ +  EMI  G       M L NVV     C   +
Sbjct: 539 GLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKG-------MSLDNVV-----CTSLM 586

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           DG  K G++ +   L   +  S  +L +  +   + G C   + + A E+ +++    + 
Sbjct: 587 DGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGIT 646

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSME 341
            D V YN LI+   K G +++   L   ME
Sbjct: 647 PDAVVYNCLINKCQKLGNMEEAAILQNEME 676



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 165/342 (48%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  TFN +I   C EG++ +A  L+ +M   GC P+V T ++LI G  + G +    KL 
Sbjct: 193 NVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLV 252

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM  G G      +P+V  Y +L++  CK   +++    F EMK +G+ AN +      
Sbjct: 253 GEM-RGCG-----CRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFV 306

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   + EA +L   M  +G+ P   TYT L++G C  G+++ A+ L + M ++G  
Sbjct: 307 DAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVP 366

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +V +Y+VL++G CK   V EA +V R M   G +   NE+    ++   F        +
Sbjct: 367 LNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRA--NELLYTTLIHGHF--------V 416

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            KN      + L   ++    EL V ++ +LI G C     + A  L NK+    L  + 
Sbjct: 417 YKNSE--RALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNN 474

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V Y  ++ A  K  +  +   LL  M ++G   ++ T+  L+
Sbjct: 475 VIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALV 516



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 157/377 (41%), Gaps = 61/377 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF++ +  FC  G +R+A +L  +M   G +PN  T   L+ G  + G ++  L L 
Sbjct: 298 NVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLT 357

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EMV       G+   NV  Y  L+DGLCK+  V + +D+F  M+  GI AN LL     
Sbjct: 358 NEMVQQ-----GV-PLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLI 411

Query: 138 --------------------------------------CKKTKLVEANRLLELMMQRGLN 159
                                                 C   KL EA  LL  M + GL 
Sbjct: 412 HGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLK 471

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P    YT +++      K + AIAL   M   GF P++ +Y  L++G CK  +++EA++ 
Sbjct: 472 PNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISH 531

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                       FN+M    + P        +DGLCKNG + + + L   +      L  
Sbjct: 532 ------------FNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDN 579

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            +  SL+ G  K G  + A  L  K+    L  D+  Y   +        I++   +L  
Sbjct: 580 VVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSE 639

Query: 340 MEENGCALDVDTFNTLM 356
           M ENG   D   +N L+
Sbjct: 640 MIENGITPDAVVYNCLI 656



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 146/350 (41%), Gaps = 54/350 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A +A G   RR   P      ++L+      G + DA   + ++      PN  TC+ ++
Sbjct: 116 AALALGP--RRSALP---SVVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHIL 170

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             L R  +  L  +L          F  +  PNVF +  +ID                  
Sbjct: 171 LCLARERSSELAWRL----------FEQLPAPNVFTFNIMID------------------ 202

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                     LCK+  L EA  LL  M   G +P + TY  L++GY   G++     L  
Sbjct: 203 ---------FLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVG 253

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            M   G  PDV +Y+ L+N +CK   +E A +             F EMK   V+    T
Sbjct: 254 EMRGCGCRPDVVTYNALVNCFCKFGRMERAYSY------------FAEMKREGVMANVVT 301

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            + F+D  CKNG V E M+LF  + +   +     +  L+ G CK G  + A  L N++ 
Sbjct: 302 FSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMV 361

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            + +  +VV Y +L+  L KEG++ +   +   ME  G   +   + TL+
Sbjct: 362 QQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLI 411



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 57/119 (47%)

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P  FT NI ID LCK G + E   L   ++   C   V  +NSLI G  K G  E   +
Sbjct: 191 APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEK 250

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L  ++       DVV YN L++   K G++++       M+  G   +V TF+T + +F
Sbjct: 251 LVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAF 309


>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 393

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 161/347 (46%), Gaps = 48/347 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +N++I   C +  + D   L  +M      P+V T +TLI  L     + +  +    
Sbjct: 40  VMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRKEYGFS 99

Query: 85  MVNGMGDFGGIYK--------PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
           ++  M +  G+          PN+  + +L+DGLCKD  V +                  
Sbjct: 100 ILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKK------------------ 141

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
                    A  +L +M+++ + P I TY  L++GY LV +VN A  LF++++ +G  P+
Sbjct: 142 ---------ARNVLAIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPN 192

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V SY V+ING CKN  V+EA N            +F EM   N+VP+T   N  IDGLCK
Sbjct: 193 VRSYKVMINGLCKNKMVDEAAN------------LFKEMHSKNMVPDTVAYNSLIDGLCK 240

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +  + +V +    +        +  +NSL+ G CK    + A  L  K+  + +  ++  
Sbjct: 241 SRRIYDVWDFIGEMHDRGQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPNIYT 300

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y IL+  L K G+++    +   +   G  LD   + T+MI+ L KE
Sbjct: 301 YTILVDGLCKNGRLRDAQEVYQDLLNKGYQLDARIY-TVMINGLCKE 346



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 144/322 (44%), Gaps = 40/322 (12%)

Query: 25  VTFNSLIK--------------GFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           VT+N+LI               GF + G +++A  L+ +M +    PN+ T  TL+ GL 
Sbjct: 75  VTYNTLIYSLLNFVYIKIRKEYGFSILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLC 134

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G +     +   M+          +PN+  Y SL+DG    + V++ K LF  +  +G
Sbjct: 135 KDGEVKKARNVLAIMIKQR------VEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRG 188

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           +  N          LCK   + EA  L + M  + + P    Y  L++G C   ++    
Sbjct: 189 MTPNVRSYKVMINGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVW 248

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
                M  +G   ++ +Y+ L++G CKN  V++A+ +          KI N+     + P
Sbjct: 249 DFIGEMHDRGQPANIITYNSLLDGLCKNHQVDKAITL--------LTKIKNQ----GIRP 296

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
             +T  I +DGLCKNG + +  E++  L     +L   I+  +I G CK G  + A  L 
Sbjct: 297 NIYTYTILVDGLCKNGRLRDAQEVYQDLLNKGYQLDARIYTVMINGLCKEGFLDEALSLL 356

Query: 303 NKLSCKNLVADVVAYNILIHAL 324
           +K+       D V Y I I AL
Sbjct: 357 SKMEDNKCTPDGVTYEITIRAL 378



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 112/217 (51%), Gaps = 15/217 (6%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I++   P N VT+NSL+ G+ +   +  A QL   ++  G  PNV +   +I GL +   
Sbjct: 150 IKQRVEP-NIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKM 208

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++    L +EM            P+   Y SLIDGLCK R +    D   EM D+G  AN
Sbjct: 209 VDEAANLFKEM------HSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPAN 262

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +        LCK  ++ +A  LL  +  +G+ P I+TYT L++G C  G++  A  ++ 
Sbjct: 263 IITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEVYQ 322

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
            +  KG+  D   Y+V+ING CK   ++EA+++  +M
Sbjct: 323 DLLNKGYQLDARIYTVMINGLCKEGFLDEALSLLSKM 359



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 104/270 (38%), Gaps = 82/270 (30%)

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFM----------PDVFSYSVLINGYCKNFNVEEAMN 218
           + G CL G+V  A+   D +  KGF           PDV  Y+ +I+  CK+  V +  +
Sbjct: 1   MKGLCLNGEVRKALYFHDHVIAKGFHLNHIERLLVKPDVVMYNTIIDILCKDKLVSDGCD 60

Query: 219 VSREMI------------------LN----------GFK---------KIFNEMKLCNVV 241
           +  EMI                  LN          GF           + N+M    V 
Sbjct: 61  LYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRKEYGFSILGQMKEAVGLLNQMTSKTVT 120

Query: 242 PETFTCNIFIDGLCKNG------HVLEVM-----------------------------EL 266
           P   T    +DGLCK+G      +VL +M                             +L
Sbjct: 121 PNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQL 180

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
           F T+ +      V  +  +I G CK  + + A+ LF ++  KN+V D VAYN LI  L K
Sbjct: 181 FNTISLRGMTPNVRSYKVMINGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCK 240

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             +I      +  M + G   ++ T+N+L+
Sbjct: 241 SRRIYDVWDFIGEMHDRGQPANIITYNSLL 270



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 6/109 (5%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           +P N +T+NSL+ G C    +  A  L+ K+   G RPN+ T   L+ GL + G +    
Sbjct: 259 QPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQ 318

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           +++Q+++N        Y+ +   Y  +I+GLCK+  +D+   L  +M+D
Sbjct: 319 EVYQDLLNKG------YQLDARIYTVMINGLCKEGFLDEALSLLSKMED 361


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 169/369 (45%), Gaps = 36/369 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+   + SLI  +   G  RDA  + KKM   GC+P + T + +   L   G M +    
Sbjct: 215 LDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVI---LNVYGKMGMPWSK 271

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL 136
              +V+GM   G    P+ + Y +LI    +  L ++   +F EMK  G +      NTL
Sbjct: 272 ISGLVHGMKSSG--VAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTL 329

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L    K  +  EA  +L+ M   G +P I TY  L++ Y   G +  A+ L D M  KG 
Sbjct: 330 LDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGI 389

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
            PDVF+Y+ L++G+ K    E AM +  EM   G K                       K
Sbjct: 390 KPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMK 449

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +F E+++CN  P+  T N  +    +NG   EV  +F  ++ +      + FN+LI    
Sbjct: 450 VFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYS 509

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           + G F+ A  ++ ++    +  D+ +YN ++ AL + G  ++   +   M++  C  +  
Sbjct: 510 RCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNEL 569

Query: 351 TFNTLMISF 359
           T+ +L+ ++
Sbjct: 570 TYCSLLHAY 578



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 155/372 (41%), Gaps = 38/372 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VTFN+L+  +      ++A +++K+M   G  P++ T ++LI+   R G +   ++L 
Sbjct: 322 DKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELK 381

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
            +MV       GI KP+VF Y +L+ G  K  + +    +F EM+  G   N        
Sbjct: 382 DQMVEK-----GI-KPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALI 435

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            +   + +  E  ++ E +      P I T+  LL  +   G  +    +F  M R GF+
Sbjct: 436 KMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV 495

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
           P+  +++ LI+ Y +  + ++AM V + M+  G                        +K+
Sbjct: 496 PERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKV 555

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F EMK     P   T    +     +  +  +  L   +     E    +  +L+    K
Sbjct: 556 FAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSK 615

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
             +       F +L  K    D+   N +I   G+   + K N +L  M E+G +  + T
Sbjct: 616 CDLLMETEHAFEELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLAT 674

Query: 352 FNTLMISFLQKE 363
           +N+LM    + E
Sbjct: 675 YNSLMYMHSRSE 686



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 161/395 (40%), Gaps = 61/395 (15%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLI  +  +G +R+A +L  +M   G +P+V T  TL++G  + G     +++  E
Sbjct: 359 VTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGE 418

Query: 85  MVNG------------------MGDFGGIYK-----------PNVFCYGSLIDGLCKDRL 115
           M                      G F  + K           P++  + +L+    ++ +
Sbjct: 419 MRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGM 478

Query: 116 VDQTKDLFMEMKDKGI-----NANTLLCKKTK---LVEANRLLELMMQRGLNPVIFTYTP 167
             +   +F EMK  G        NTL+   ++     +A  + + M++ G+ P + +Y  
Sbjct: 479 DSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNA 538

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---- 223
           +L      G    +  +F  M      P+  +Y  L++ Y  +  +E    ++ E+    
Sbjct: 539 VLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGL 598

Query: 224 -------------------ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
                              +L   +  F E+K     P+  T N  I    +   V +  
Sbjct: 599 TEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKGS-PDLSTLNAMIAIYGRRQMVAKAN 657

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           E+   +  S     +  +NSL+    +   FE + E+  ++  K L  D+++YN +I A 
Sbjct: 658 EILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAY 717

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + G++K  + +   M+  G   DV T+NT + S+
Sbjct: 718 CRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASY 752



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 23/273 (8%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLCKKTKL----VEANRL 149
           +V+ Y SLI     +        +F +M+++G     I  N +L    K+     + + L
Sbjct: 216 DVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGL 275

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKV-NVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +  M   G+ P  +TY  L++  C  G +   A  +F+ M   GF PD  +++ L++ Y 
Sbjct: 276 VHGMKSSGVAPDDYTYNTLISC-CRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYG 334

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K+   +EAM V +EM  +GF             P   T N  I    ++G + E MEL  
Sbjct: 335 KSRRPKEAMEVLKEMEFSGFS------------PSIVTYNSLISAYARDGLLREAMELKD 382

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +     +  V  + +L+ G  K G+ E A  +F ++       ++  +N LI   G  G
Sbjct: 383 QMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRG 442

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +  +   +   +E   CA D+ T+NTL+  F Q
Sbjct: 443 RFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQ 475



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 152/346 (43%), Gaps = 33/346 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+L+  F   G   + S + K+M   G  P   T +TLI+   R G+    + +++ 
Sbjct: 464 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKR 523

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------L 137
           M+       G+  P++  Y +++  L +  L +Q++ +F EMKD     N L        
Sbjct: 524 MLEA-----GV-TPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHA 577

Query: 138 CKKTKLVEANRLLELMMQRGLN---PVIFTYTPLLNGYC-LVGKVNVAIALFDSMARKGF 193
              +K +E    L   +  GL    PV+     L+N  C L+ +   A   F+ + +KG 
Sbjct: 578 YANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHA---FEELKKKG- 633

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ + + +I  Y +           R+M+     +I N M      P   T N  +  
Sbjct: 634 SPDLSTLNAMIAIYGR-----------RQMVAKA-NEILNFMNESGFSPSLATYNSLMYM 681

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             ++ +     E+   +     +  +  +N++I   C+ G  + AS +F+ +    LV D
Sbjct: 682 HSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPD 741

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           V+ YN  + +   +   +    ++  M ++GC  + +T+N+++  +
Sbjct: 742 VITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGY 787



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 126/337 (37%), Gaps = 96/337 (28%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F    R  + P  D TFN+LI  +   G+ + A  + K+M   G  P++++ + ++  L 
Sbjct: 486 FKEMKRAGFVPERD-TFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALA 544

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD------------- 117
           R G    + K+  EM +G        KPN   Y SL+      + ++             
Sbjct: 545 RGGLWEQSEKVFAEMKDGRC------KPNELTYCSLLHAYANSKEIERMHTLAEEIYSGL 598

Query: 118 ----------------------QTKDLFMEMKDKG------INANTLLCKKTKLV-EANR 148
                                 +T+  F E+K KG      +NA   +  + ++V +AN 
Sbjct: 599 TEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKGSPDLSTLNAMIAIYGRRQMVAKANE 658

Query: 149 LLELMMQRGLNPVIFTYTPLLN-----------------------------------GYC 173
           +L  M + G +P + TY  L+                                     YC
Sbjct: 659 ILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYC 718

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G++  A  +F  M   G +PDV +Y+  +  Y  +   E+A+ V R MI +G K+  N
Sbjct: 719 RNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQN 778

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
                       T N  +DG CK+    + +    +L
Sbjct: 779 ------------TYNSIVDGYCKHSRRADAIMFVSSL 803


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 139/273 (50%), Gaps = 26/273 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+   FN LI  +  +  + +   +  KM   G  PN     T+I GL + G ++  +  
Sbjct: 180 LDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLN 239

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            ++M++      G+  PNV  Y SLI  LC     ++ ++L  E+ D+GIN N +     
Sbjct: 240 FEQMIDK-----GL-TPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTI 293

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK+ +++E+ +L +L+   G+NP + TY+ L++GYCL GK++ A+ L   M   G 
Sbjct: 294 LDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGL 353

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD  +YS LINGYCK   +E+A+ + +EM  NG            V P+  T NI + G
Sbjct: 354 KPDSVTYSTLINGYCKINRMEDALALFKEMESNG------------VNPDIITYNIILHG 401

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
           L +        EL+  +  S  +L +  +N ++
Sbjct: 402 LFRTRRTAAAKELYARITESGTQLELSTYNIIL 434



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 167/368 (45%), Gaps = 39/368 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+NS++ G+C  G    A  + +KM + G  P+V T ++L+  L + G      K+   M
Sbjct: 79  TYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSM 138

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLC- 138
           V  G+       KP++  YG+L+ G      + +  DL   M   G+       N L+C 
Sbjct: 139 VKRGL-------KPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICA 191

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             K+ K+ E   +   M Q+GL P    Y  +++G C +G+++ A+  F+ M  KG  P+
Sbjct: 192 YTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPN 251

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFN 233
           V  Y+ LI+  C     E+A  +  E++  G                        KK+F+
Sbjct: 252 VVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFD 311

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            +    V P+  T +  IDG C  G +   M+L   +     +     +++LI G CK  
Sbjct: 312 LLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKIN 371

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A  LF ++    +  D++ YNI++H L +  +      L   + E+G  L++ T+N
Sbjct: 372 RMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYN 431

Query: 354 TLMISFLQ 361
            +++ F +
Sbjct: 432 IILMDFAK 439



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 160/351 (45%), Gaps = 32/351 (9%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           RC  P + V++N++I G   EG++  A     +M      P+  T +++I  L +   M+
Sbjct: 6   RC--PPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMD 63

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
             +++   MV           PN F Y S++ G C     ++   +F +M   GI  + +
Sbjct: 64  RAMEVLTVMV----------MPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVV 113

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LCK  K  EA ++ + M++RGL P I TY  LL+GY   G +     L   M
Sbjct: 114 TYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALM 173

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            + G   D   +++LI  Y K   V+E + V            F++M+   + P      
Sbjct: 174 VQNGMQLDHHVFNILICAYTKQEKVDEVVLV------------FSKMRQQGLTPNAVNYR 221

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             IDGLCK G + + M  F  +        V ++ SLI   C +  +E A EL  ++  +
Sbjct: 222 TVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQ 281

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +  ++V +N ++ +L KEG++ +   L   +   G   DV T++TL+  +
Sbjct: 282 GINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGY 332



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 153/356 (42%), Gaps = 51/356 (14%)

Query: 10  AFGSFIRRCYRPLND--VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A G F + C   +    VT+NSL+   C  G   +A ++   M   G +P++TT  TL+ 
Sbjct: 96  AIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLH 155

Query: 68  GLRRTGNMNLTLKLHQEMV-NGMGDFGGIY----------------------------KP 98
           G    G +     L   MV NGM     ++                             P
Sbjct: 156 GYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTP 215

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLL 150
           N   Y ++IDGLCK   +D     F +M DKG+  N +        LC   K  +A  L+
Sbjct: 216 NAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELI 275

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
             ++ +G+NP I  +  +L+  C  G+V  +  LFD +   G  PDV +YS LI+GYC  
Sbjct: 276 FEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLA 335

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
             ++ AM +   M+  G K            P++ T +  I+G CK   + + + LF  +
Sbjct: 336 GKMDGAMKLLTGMVSVGLK------------PDSVTYSTLINGYCKINRMEDALALFKEM 383

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
           E +     +  +N ++ G  +      A EL+ +++      ++  YNI++    K
Sbjct: 384 ESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDFAK 439



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 16/204 (7%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + +Y  +++G    G V+ A   +  M  +   PD  +Y+ +I    K   ++ AM V
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
              M++                P  FT N  + G C +G   + + +F  +     E  V
Sbjct: 69  LTVMVM----------------PNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDV 112

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             +NSL+   CK G    A ++F+ +  + L  D+  Y  L+H    +G + + + LL  
Sbjct: 113 VTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLAL 172

Query: 340 MEENGCALDVDTFNTLMISFLQKE 363
           M +NG  LD   FN L+ ++ ++E
Sbjct: 173 MVQNGMQLDHHVFNILICAYTKQE 196


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 173/390 (44%), Gaps = 38/390 (9%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++  AL  F   + R   P + VT++ L+   C E   R A  L+ +M   GC P++ T 
Sbjct: 266 RIPDALAVFDDMLHRGCSP-SVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTY 324

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + LI  +   G+++  L +    ++ +   G   KP+   Y  ++  LC      + ++L
Sbjct: 325 NVLINAMCNEGDVDEALNI----LSNLPSHG--CKPDAVTYTPVLKSLCGSERWKEVEEL 378

Query: 123 FMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             EM       +        T LC++  +  A  +++ M + G    I TY+ +L+G C 
Sbjct: 379 LAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCD 438

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI---------- 224
           VG+V+ A+ L   +   G  PD  +Y+ ++ G C     E A  +  EM+          
Sbjct: 439 VGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVT 498

Query: 225 -------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                        ++   ++  +M      P+  T N  IDGLC    + + MEL   L+
Sbjct: 499 FNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQ 558

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
              C+  +  FN+L++G C    +E A +L   +   N   D + +N +I +L ++G + 
Sbjct: 559 SCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLT 618

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +    L  M ENGC  +  T++ ++ + L+
Sbjct: 619 QAIETLKIMAENGCVPNSSTYSIVVDALLK 648



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 62/361 (17%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V  N LIK  C +G + DA ++    A  G    V T +T++ G  R G +    +L   
Sbjct: 188 VPCNILIKRLCSDGRVSDAERV---FAALGPSATVVTYNTMVNGYCRAGRIEDARRL--- 241

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
            +NGM      + P+ F +  LI  LC                            + ++ 
Sbjct: 242 -INGMP-----FPPDTFTFNPLIRALCV---------------------------RGRIP 268

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +A  + + M+ RG +P + TY+ LL+  C       A+AL D M  KG  PD+ +Y+VLI
Sbjct: 269 DALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLI 328

Query: 205 NGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVV 241
           N  C   +V+EA+N+   +  +G K                       ++  EM   N  
Sbjct: 329 NAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCA 388

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P+  T N  +  LC+ G V   +E+   +    C   +  ++S++ G C  G  + A EL
Sbjct: 389 PDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVEL 448

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            ++L       D +AY  ++  L    Q ++   L+  M  + C  D  TFNT++ S  Q
Sbjct: 449 LSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQ 508

Query: 362 K 362
           K
Sbjct: 509 K 509



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 153/340 (45%), Gaps = 29/340 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+++ G+C  G I DA +L+  M      P+  T + LI  L   G +   L +  +
Sbjct: 220 VTYNTMVNGYCRAGRIEDARRLINGMPF---PPDTFTFNPLIRALCVRGRIPDALAVFDD 276

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M++          P+V  Y  L+D  CK+    Q   L  EM+ KG   + +        
Sbjct: 277 MLHRG------CSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINA 330

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +C +  + EA  +L  +   G  P   TYTP+L   C   +      L   M      PD
Sbjct: 331 MCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPD 390

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +++ ++   C+   V+ A+ V   M  +G             V +  T +  +DGLC 
Sbjct: 391 EVTFNTIVTSLCQQGLVDRAIEVVDHMSEHG------------CVADIVTYSSILDGLCD 438

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V + +EL   L+   C+     + ++++G C    +E A EL  ++ C +   D V 
Sbjct: 439 VGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVT 498

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +N ++ +L ++G + +   ++  M ENGC+ D+ T+N ++
Sbjct: 499 FNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCII 538



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 162/346 (46%), Gaps = 29/346 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+  ++K  C     ++  +L+ +M +  C P+  T +T++T L + G ++  +    E
Sbjct: 357 VTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAI----E 412

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           +V+ M + G +   ++  Y S++DGLC    VD   +L   +K  G   +T+        
Sbjct: 413 VVDHMSEHGCVA--DIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKG 470

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +   A  L+  M+     P   T+  ++   C  G V+ AI + + M+  G  PD
Sbjct: 471 LCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPD 530

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ +I+G C    +++AM            ++ ++++ C   P+  T N  + GLC 
Sbjct: 531 IVTYNCIIDGLCNESCIDDAM------------ELLSDLQSCGCKPDIVTFNTLLKGLCG 578

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
                +  +L   +  SNC      FN++I   C+ G+   A E    ++    V +   
Sbjct: 579 VDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSST 638

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           Y+I++ AL K G+ +    LL  M  NG   D+ T+NT+ IS L K
Sbjct: 639 YSIVVDALLKAGKAQAALELLSGM-TNGTP-DLITYNTV-ISNLTK 681



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 163/341 (47%), Gaps = 28/341 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++VTFN+++   C +G +  A ++V  M+  GC  ++ T  +++ GL   G ++  +   
Sbjct: 390 DEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAV--- 446

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-----KDKGINANTL- 136
            E+++ +  +G   KP+   Y +++ GLC     ++ ++L  EM         +  NT+ 
Sbjct: 447 -ELLSRLKSYG--CKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVV 503

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+K  +  A R++E M + G +P I TY  +++G C    ++ A+ L   +   G  
Sbjct: 504 ASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCK 563

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ +++ L+ G C     E+A            +++   M   N  P+  T N  I  L
Sbjct: 564 PDIVTFNTLLKGLCGVDRWEDA------------EQLMANMMRSNCPPDELTFNTVITSL 611

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + + +E    +  + C      ++ ++    K G  + A EL + ++  N   D+
Sbjct: 612 CQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMT--NGTPDL 669

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + YN +I  L K G++++   LL  M  NG   D  T+ +L
Sbjct: 670 ITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSL 710



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 159/337 (47%), Gaps = 32/337 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P ++VTFN+++   C +G +  A ++V++M+  GC P++ T + +I GL     ++  + 
Sbjct: 493 PPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAM- 551

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKD----KGINANT 135
              E+++ +   G   KP++  + +L+ GLC  DR  D  + +   M+       +  NT
Sbjct: 552 ---ELLSDLQSCG--CKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNT 606

Query: 136 L---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           +   LC+K  L +A   L++M + G  P   TY+ +++     GK   A+ L   M    
Sbjct: 607 VITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG- 665

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+ +Y+ +I+   K   +EEA+++ R M+ NG         LC   P+T T      
Sbjct: 666 -TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNG---------LC---PDTTTYRSLAY 712

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G+C+       + +   ++ +        +N ++ G C+    ++A + F  +     + 
Sbjct: 713 GVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMP 772

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           D   Y IL+ AL   G + +   LL S+    C+L V
Sbjct: 773 DESTYVILLEALAYGGLLDEAKRLLASL----CSLGV 805



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 106/229 (46%), Gaps = 20/229 (8%)

Query: 137 LCKKTKLVEANRLLELMMQRGLN--PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           L ++ ++ EA  L + M   G    P +     L+   C  G+V+ A  +F ++   G  
Sbjct: 160 LVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAAL---GPS 216

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
             V +Y+ ++NGYC+   +E+A            +++ N M      P+TFT N  I  L
Sbjct: 217 ATVVTYNTMVNGYCRAGRIEDA------------RRLINGMPF---PPDTFTFNPLIRAL 261

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G + + + +F  +    C   V  ++ L+   CK   +  A  L +++  K    D+
Sbjct: 262 CVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDI 321

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           V YN+LI+A+  EG + +   +L ++  +GC  D  T+  ++ S    E
Sbjct: 322 VTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSE 370


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 162/357 (45%), Gaps = 32/357 (8%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           ++   RP    +F+ +I G C  G +  A  L + M   GC+ NV   + LI  L  +  
Sbjct: 409 VKEMVRPXT-TSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNR 467

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG---- 130
           +     L +EM       G  ++P  F + S+   LC+   V    D+  EM+  G    
Sbjct: 468 LEECYLLLKEMK------GSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPW 521

Query: 131 INANTLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           I   TLL    CK+ +  EA   L  M++ G  P I  Y+  ++G+  +  V+ A+ +F 
Sbjct: 522 IKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFR 581

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            +  +G+ PDV +Y+ LING+CK   V EA ++  EM+  G            +VP   T
Sbjct: 582 DICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKG------------LVPSVVT 629

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N+ IDG CKNG + +       +     E  V  + +LI G C  G  + A  L+N++ 
Sbjct: 630 YNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMR 689

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT--FNTLMISFLQ 361
            K    + +++  LIH L K G     +  LL   E G     DT  +  L+ SF+ 
Sbjct: 690 GKGCSPNRISFIALIHGLCKCGW---PDAALLYFREMGERETPDTIVYVALITSFIS 743



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 138/319 (43%), Gaps = 30/319 (9%)

Query: 46  LVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS 105
           +VK+M     RP  T+   +I GL  TG ++L L L ++MV  +G      K NV  Y +
Sbjct: 408 MVKEMV----RPXTTSFSIVIDGLCNTGKLDLALSLFRDMVR-VG-----CKQNVLLYNN 457

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRG 157
           LID L     +++   L  EMK  G              LC++  +  A  ++  M   G
Sbjct: 458 LIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHG 517

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
             P I  YT L+   C   +   A      M R+GF+PD+ +YS  I+G+ K   V++A+
Sbjct: 518 HEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQAL 577

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            + R++   G+             P+    N  I+G CK   V E  ++   +       
Sbjct: 578 EIFRDICARGY------------CPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVP 625

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  +N LI G CK G  + A    +++  K    +V+ Y  LI  L   G+     +L 
Sbjct: 626 SVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLW 685

Query: 338 LSMEENGCALDVDTFNTLM 356
             M   GC+ +  +F  L+
Sbjct: 686 NEMRGKGCSPNRISFIALI 704



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 161/420 (38%), Gaps = 96/420 (22%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN+ TF  LI GF  +  +  A QL KKM   G  P+V+  D LI GL     +   L L
Sbjct: 261 LNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHL 320

Query: 82  HQEMVN-GMG-DFGGIYKPNVFC-------------------------YGSLIDGLCKDR 114
             EM   G+  D   + K   +C                         Y S+++GL   +
Sbjct: 321 LSEMKELGIDPDIQILSKLIPYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGK 380

Query: 115 LVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
            VD+   L   M       N          E N+    M++  + P   +++ +++G C 
Sbjct: 381 SVDKAYYLLXAMTGDNYTDN---------FEVNKF--FMVKEMVRPXTTSFSIVIDGLCN 429

Query: 175 VGKVNVAIALFDSMAR-----------------------------------KGFMPDVFS 199
            GK+++A++LF  M R                                    GF P  F+
Sbjct: 430 TGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFT 489

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL--------------CN------ 239
           ++ +    C+  +V  A+++ REM ++G +       L              CN      
Sbjct: 490 HNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMV 549

Query: 240 ---VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
               +P+    +  IDG  K   V + +E+F  +        V  +N+LI G CK     
Sbjct: 550 REGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVS 609

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A ++ +++  K LV  VV YN+LI    K G I +  + L  M       +V T+ TL+
Sbjct: 610 EAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLI 669



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 92/221 (41%), Gaps = 35/221 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F     R Y P + V +N+LI GFC    + +A  ++ +M   G  P+V T + LI
Sbjct: 576 ALEIFRDICARGYCP-DVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 634

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G+++        MV      G   +PNV  Y +LIDGLC     D    L+ EM
Sbjct: 635 DGWCKNGDIDQAFHCLSRMV------GKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEM 688

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
           + KG + N +                           ++  L++G C  G  + A+  F 
Sbjct: 689 RGKGCSPNRI---------------------------SFIALIHGLCKCGWPDAALLYFR 721

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
            M  +   PD   Y  LI  +  N N   A  + +EM+  G
Sbjct: 722 EMGERE-TPDTIVYVALITSFISNKNPTLAFEILKEMVAKG 761



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 136/312 (43%), Gaps = 43/312 (13%)

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
            + ++G+++L     +EM     D G  ++P+ +   S++   C  R  D+   +F E+ 
Sbjct: 168 AISKSGSIDLVEMRLKEMC----DSG--WEPDKYTLTSVLQAYCNSRKFDKALSVFNEIY 221

Query: 128 DKG-INANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
            +G ++ + L        K  ++ +A  L+E M   G+     T+  L++G+    +V+ 
Sbjct: 222 GRGWVDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDK 281

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A+ LF  M + GF PDV  Y  LI G C    +E+A++            + +EMK   +
Sbjct: 282 ALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALH------------LLSEMKELGI 329

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+    +  I    +   +  ++E    LE  + E  + ++NS++ G       + A  
Sbjct: 330 DPDIQILSKLIPYCSEEVDIYRLIE--ERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYY 387

Query: 301 LFNKLSCKN-----------LVADVV-----AYNILIHALGKEGQIKKENYLLLSMEENG 344
           L   ++  N           +V ++V     +++I+I  L   G++     L   M   G
Sbjct: 388 LLXAMTGDNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVG 447

Query: 345 CALDVDTFNTLM 356
           C  +V  +N L+
Sbjct: 448 CKQNVLLYNNLI 459


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 148/306 (48%), Gaps = 26/306 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           + ++I  +C  GN+R A++++ +    G  PN  T   LI G  + G M     L  +M 
Sbjct: 285 YTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADM- 343

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL---LC 138
              G   G+   N   + ++IDG C+  +VD    +   M+  G+       NTL   LC
Sbjct: 344 --QGQGVGL---NQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLC 398

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +  +L EA  LL +M++ G+ P   TYT L++ +C  G +  A  LF  MA KG  P V 
Sbjct: 399 RVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVV 458

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y+V+I+GY K  ++ EA    +EM   GF            VP+ +T    + G C NG
Sbjct: 459 TYNVMIDGYTKKGSIREAERFRKEMEKKGF------------VPDVYTYASLVHGHCVNG 506

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            V   ++LF  ++    E  V  + +LI G  K G  E A +L++ +    L+ D   Y+
Sbjct: 507 KVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYS 566

Query: 319 ILIHAL 324
            L+ +L
Sbjct: 567 ALVGSL 572



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 149/342 (43%), Gaps = 26/342 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  L+       +I     L  +M       +V     +I    R GNM    K+  E 
Sbjct: 249 TYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDEC 308

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
           V      G   +PN   YG LI+G CK   ++  + L  +M+ +G+  N ++        
Sbjct: 309 V------GNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGY 362

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+K  + +A ++   M + G+   I+TY  L  G C V +++ A  L   M   G +P+ 
Sbjct: 363 CRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNY 422

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LI+ +CK+ ++ EA            +++F EM      P   T N+ IDG  K 
Sbjct: 423 VTYTTLISIHCKDGDMVEA------------RRLFREMAEKGATPSVVTYNVMIDGYTKK 470

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + E       +E       V  + SL+ G C  G  ++A +LF ++  +    +VVAY
Sbjct: 471 GSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAY 530

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             LI  L KEG+ +    L   M + G   D   ++ L+ S 
Sbjct: 531 TALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 572



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 118/253 (46%), Gaps = 26/253 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ T+  LI GFC  G +  A  L+  M   G   N    +T+I G  R G ++  LK+ 
Sbjct: 316 NERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIK 375

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
             M   MG      + +++ Y +L  GLC+   +D+ K L   M + G+  N        
Sbjct: 376 AAM-EKMG-----VELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLI 429

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           ++ CK   +VEA RL   M ++G  P + TY  +++GY   G +  A      M +KGF+
Sbjct: 430 SIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFV 489

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV++Y+ L++G+C N  V+ A+            K+F EMK     P        I GL
Sbjct: 490 PDVYTYASLVHGHCVNGKVDVAL------------KLFEEMKQRGTEPNVVAYTALISGL 537

Query: 255 CKNGHVLEVMELF 267
            K G      +L+
Sbjct: 538 AKEGRSEAAFQLY 550



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 112/215 (52%), Gaps = 14/215 (6%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN + FN++I G+C +G + DA ++   M   G   ++ T +TL  GL R   ++    L
Sbjct: 350 LNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTL 409

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
              M+  MG       PN   Y +LI   CKD  + + + LF EM +KG   + +     
Sbjct: 410 LHIMIE-MG-----VVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVM 463

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                KK  + EA R  + M ++G  P ++TY  L++G+C+ GKV+VA+ LF+ M ++G 
Sbjct: 464 IDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGT 523

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
            P+V +Y+ LI+G  K    E A  +  +M+  G 
Sbjct: 524 EPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGL 558



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 126/288 (43%), Gaps = 31/288 (10%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRG 157
           ++DGLCK   VD  + L  +M   G++ N L          ++        +LE+M   G
Sbjct: 183 VVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEG 242

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           +   + TYT L++       ++   ALF+ M     + DV+ Y+ +IN YC+  N+  A 
Sbjct: 243 IEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAA 302

Query: 218 NVSRE--------------MILNGFKKIFN----EMKLCNVVPE-----TFTCNIFIDGL 254
            V  E              +++NGF KI      EM L ++  +         N  IDG 
Sbjct: 303 KVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGY 362

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G V + +++   +E    EL +  +N+L  G C+    + A  L + +    +V + 
Sbjct: 363 CRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNY 422

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V Y  LI    K+G + +   L   M E G    V T+N ++  + +K
Sbjct: 423 VTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKK 470


>gi|218194640|gb|EEC77067.1| hypothetical protein OsI_15461 [Oryza sativa Indica Group]
          Length = 548

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 143/296 (48%), Gaps = 32/296 (10%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---------LCKKTKLVEANRL 149
           +   YG LI G C    + + K+L  +M  KGI    +         LCK+ ++ E   +
Sbjct: 191 DTAVYGCLIQGQCNRGDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDI 250

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           ++L++  G  P + T+  L++GYCLVG +  A+ L DSM   G  PD+++Y+ L++GYCK
Sbjct: 251 VDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCK 310

Query: 210 NFNVEEAMNVSREM--------------ILNGF---------KKIFNEMKLCNVVPETFT 246
           +  +++A+ + R+M              IL+G          K++F+EM    +     T
Sbjct: 311 HGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVVAKEMFHEMIESGMAVSIHT 370

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
               + GLC+N    E   L   L   N +  +  FN +IR   K G  + A ELF  +S
Sbjct: 371 YATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRMQEAKELFAAIS 430

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              LV  ++ Y ++I  L KE   +  + L  SME++GC  D    N ++   L K
Sbjct: 431 TYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSGCTPDSCILNEIIRMLLNK 486



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 137/319 (42%), Gaps = 26/319 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F S+I   C EG + +   +V  +   G RPN+ T ++L+ G    GNM   + L    +
Sbjct: 231 FTSIINNLCKEGRVAEGKDIVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGL----L 286

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
           + M   G   +P+++ Y +L+DG CK   +D    LF +M  K +   ++        L 
Sbjct: 287 DSMESVG--VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLF 344

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +  + V A  +   M++ G+   I TY  +L G C     + A  L + +       D+ 
Sbjct: 345 QARRTVVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDIL 404

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++++I    K   ++EA            K++F  +    +VP   T  + I  L K  
Sbjct: 405 TFNIVIRAMFKVGRMQEA------------KELFAAISTYGLVPTILTYRVMITNLIKEE 452

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              +   LF ++E S C     I N +IR     G    A    +K+  K ++ +    +
Sbjct: 453 SFEDADNLFSSMEKSGCTPDSCILNEIIRMLLNKGEIAKAGHYLSKIDKKGILPEATTTS 512

Query: 319 ILIHALGKEGQIKKENYLL 337
           +LI+     G+ ++   LL
Sbjct: 513 LLIYLFSVNGKYREYIKLL 531



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 130/286 (45%), Gaps = 38/286 (13%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            I    RP N +TFNSL+ G+C+ GN+++A  L+  M + G  P++ T +TL+ G  + G
Sbjct: 254 IIHTGQRP-NLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHG 312

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            ++  L L ++M++       +       Y  ++ GL + R     K++F EM + G+  
Sbjct: 313 RIDDALTLFRDMLHKRVTLTSV------SYNIILHGLFQARRTVVAKEMFHEMIESGMAV 366

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +          LC+     EAN LLE +    +   I T+  ++     VG++  A  LF
Sbjct: 367 SIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRMQEAKELF 426

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------FKKIFNE 234
            +++  G +P + +Y V+I    K  + E+A N+   M  +G            + + N+
Sbjct: 427 AAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSGCTPDSCILNEIIRMLLNK 486

Query: 235 MKLCN------------VVPETFTCNIFIDGLCKNGHVLEVMELFP 268
            ++              ++PE  T ++ I     NG   E ++L P
Sbjct: 487 GEIAKAGHYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLLP 532



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 27/348 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-VTTCDTLITGLRRTGNMNLTL 79
           PL+   +  LI+G C  G++  A +L+  M + G  P  +    ++I  L + G     +
Sbjct: 189 PLDTAVYGCLIQGQCNRGDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGR----V 244

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----N 134
              +++V+ +   G   +PN+  + SL+DG C    + +   L   M+  G+       N
Sbjct: 245 AEGKDIVDLIIHTG--QRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYN 302

Query: 135 TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           TL+   CK  ++ +A  L   M+ + +     +Y  +L+G     +  VA  +F  M   
Sbjct: 303 TLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVVAKEMFHEMIES 362

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G    + +Y+ ++ G C+N   +EA      M+L   +K+F+     NV  +  T NI I
Sbjct: 363 GMAVSIHTYATVLGGLCRNNCTDEA-----NMLL---EKLFS----MNVKFDILTFNIVI 410

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             + K G + E  ELF  +        +  +  +I    K   FE A  LF+ +      
Sbjct: 411 RAMFKVGRMQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSGCT 470

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            D    N +I  L  +G+I K  + L  +++ G   +  T + L+  F
Sbjct: 471 PDSCILNEIIRMLLNKGEIAKAGHYLSKIDKKGILPEATTTSLLIYLF 518



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 13/216 (6%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS-Y 200
           +L +A    + M+  G+      Y  L+ G C  G +  A  L   M  KG  P     +
Sbjct: 172 RLDDAMEKFKHMIDIGVPLDTAVYGCLIQGQCNRGDLVKAKELISDMLSKGIPPPCIKFF 231

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + +IN  CK   V E  ++   +I  G +            P   T N  +DG C  G++
Sbjct: 232 TSIINNLCKEGRVAEGKDIVDLIIHTGQR------------PNLITFNSLVDGYCLVGNM 279

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            E + L  ++E    E  +  +N+L+ G CK G  + A  LF  +  K +    V+YNI+
Sbjct: 280 KEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNII 339

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +H L +  +      +   M E+G A+ + T+ T++
Sbjct: 340 LHGLFQARRTVVAKEMFHEMIESGMAVSIHTYATVL 375


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 166/354 (46%), Gaps = 25/354 (7%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R    ++ V++N ++ GF  +G +   + L+ +M   G   +  T +T++ GL R G ++
Sbjct: 96  RSSESVDTVSYNVVMSGFSEQGGLAPEA-LLAEMCKRGVPFDAVTVNTVLVGLCRDGRVD 154

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
               L + MV G    GGI   +V  + SL+DG CK   ++    +   MK +G+  + +
Sbjct: 155 RAAALAEVMVRG----GGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVV 210

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LC+  ++  A  +++ M + G+ P + TYT  +  YC    V+ A +L++ M
Sbjct: 211 GYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEM 270

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
            RKG +PDV + S L+ G CK+    EA              +F EM+     P   T  
Sbjct: 271 VRKGVLPDVVTLSALVGGLCKDGRFSEAY------------ALFREMEKIGAAPNHVTYC 318

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           + ID L K     E + L   +      + + ++ +L+   CK G  + A ++F      
Sbjct: 319 MLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSD 378

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N   + V Y +LI AL K G +     +L  MEE   + +V TF++++   +++
Sbjct: 379 NHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKR 432



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 170/386 (44%), Gaps = 38/386 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   +   +R+   P + VT ++L+ G C +G   +A  L ++M   G  PN  T   LI
Sbjct: 263 AFSLYEEMVRKGVLP-DVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLI 321

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             L +    N +L L  E+V+      G+   ++  Y +L+D LCK+  +D+ KD+F   
Sbjct: 322 DTLAKAQRGNESLSLLGEVVSR-----GVVM-DLIMYTALMDWLCKEGKIDEAKDMFRHA 375

Query: 127 -----KDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
                   G+    L   LCK   +  A ++L  M ++ ++P + T++ ++NG    G V
Sbjct: 376 LSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWV 435

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI-------------- 224
             A      M  +G  P+V +Y  +I+G  K    E A++V  EM+              
Sbjct: 436 GKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSL 495

Query: 225 LNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           +NG KK         +F EM    V+ +       IDGL K G++    ++   L   N 
Sbjct: 496 VNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNL 555

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
                ++N  I   C  G  + A     ++    L  D V YN +I A  +EG+  K   
Sbjct: 556 LPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALK 615

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQ 361
           LL  M+ +    ++ T++TL++   +
Sbjct: 616 LLNGMKRSSIKPNLITYSTLIVGLFE 641



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 156/340 (45%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +NSL+ G C  G +  A  +V  M   G  PNV T    I    R   ++    L++E
Sbjct: 210 VGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEE 269

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV       G+  P+V    +L+ GLCKD    +   LF EM+  G   N +        
Sbjct: 270 MVRK-----GVL-PDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDT 323

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K  +  E+  LL  ++ RG+   +  YT L++  C  GK++ A  +F         P+
Sbjct: 324 LAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPN 383

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+VLI+  CK  NV+            G +++ +EM+  ++ P   T +  I+GL K
Sbjct: 384 GVTYTVLIDALCKAGNVD------------GAEQVLSEMEEKSISPNVVTFSSIINGLVK 431

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V +  +    ++    +  V  + ++I G  K    E A ++++++ C+ +  +   
Sbjct: 432 RGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFI 491

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            + L++ L K G+I+K   L   M E G  LD   + TL+
Sbjct: 492 VDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLI 531



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 51/375 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + V +N  I   CM G  ++A   +++M + G +P+  T +T+I    R G     LKL 
Sbjct: 558 DAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKL- 616

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK-- 140
              +NGM       KPN+  Y +LI GL +   V++ K L  EM   G +  +L  ++  
Sbjct: 617 ---LNGMKRSS--IKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVL 671

Query: 141 ---TKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              ++   ++ +LE+   MM  GL   I  Y  L+   C  G    A+ + + M+ +G  
Sbjct: 672 QACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIA 731

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------I 231
           PD  +++ LI G+ K+ +++ A +   +M+ +G                          +
Sbjct: 732 PDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMV 791

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF-------VEIFNS 284
            NEMK   + P   T +I + G  K  + +E + L+       CE+        V  +N+
Sbjct: 792 LNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLY-------CEMVGKGFLPKVSTYNA 844

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           LI    K G+   A ELFN++  + ++     Y+IL+    K     +    L  M+E G
Sbjct: 845 LISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKG 904

Query: 345 CALDVDTFNTLMISF 359
            +    T +++  +F
Sbjct: 905 FSPSKGTLSSISRAF 919



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 149/370 (40%), Gaps = 37/370 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+  LI   C  GN+  A Q++ +M      PNV T  ++I GL + G +       
Sbjct: 383 NGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYM 442

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM     D      PNV  YG++IDG  K    +   D++ EM  +G+  N        
Sbjct: 443 REMKERGID------PNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLV 496

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L K  K+ +A  L   M +RG+      YT L++G    G +  A  +   +  K  +
Sbjct: 497 NGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLL 556

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           PD   Y+V IN  C     +EA +   EM   G K                       K+
Sbjct: 557 PDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKL 616

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            N MK  ++ P   T +  I GL + G V +   L   +  S           +++ C +
Sbjct: 617 LNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQ 676

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               ++  E+   +    L AD+  YN L+  L   G  +K   +L  M   G A D  T
Sbjct: 677 GRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTIT 736

Query: 352 FNTLMISFLQ 361
           FN L++   +
Sbjct: 737 FNALILGHFK 746



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 161/403 (39%), Gaps = 76/403 (18%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V GA         +   P N VTF+S+I G    G +  A+  +++M   G  PNV T  
Sbjct: 400 VDGAEQVLSEMEEKSISP-NVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYG 458

Query: 64  TLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           T+I G  +       L ++ EM+  G+       + N F   SL++GL K+  +++ + L
Sbjct: 459 TVIDGSFKCLGQEAALDVYHEMLCEGV-------EVNKFIVDSLVNGLKKNGKIEKAEAL 511

Query: 123 FMEMKDKGI-----NANTL--------------------------------------LCK 139
           F EM ++G+     N  TL                                      LC 
Sbjct: 512 FREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCM 571

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             K  EA   LE M   GL P   TY  ++      GK   A+ L + M R    P++ +
Sbjct: 572 LGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLIT 631

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           YS LI G  +   VE+A            K + NEM      P + T    +   C  G 
Sbjct: 632 YSTLIVGLFEAGAVEKA------------KYLLNEMSSSGFSPTSLTHRRVLQA-CSQGR 678

Query: 260 ----VLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
               +LE+ E      + N  L  +I  +N+L+R  C  G+   A  +  ++S + +  D
Sbjct: 679 RSDLILEIHEW-----MMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPD 733

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            + +N LI    K G +         M  +G + +V TFNTL+
Sbjct: 734 TITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLL 776



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 145/371 (39%), Gaps = 41/371 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N    +SL+ G    G I  A  L ++M   G   +     TLI GL +TGN+    K+
Sbjct: 487 VNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKV 546

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL 136
            QE+            P+   Y   I+ LC      + +    EM+  G+       NT+
Sbjct: 547 GQELTEKN------LLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTM 600

Query: 137 LCKKT---KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +  ++   K  +A +LL  M +  + P + TY+ L+ G    G V  A  L + M+  GF
Sbjct: 601 IAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGF 660

Query: 194 MPDVFSYSVLIN---------------------GYCKNFNVEEAMNVSREMILNGFKK-- 230
            P   ++  ++                      G C +  V   +   R +  NG  +  
Sbjct: 661 SPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTL--VRVLCYNGMTRKA 718

Query: 231 --IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
             +  EM    + P+T T N  I G  K+GH+      +  +        V  FN+L+ G
Sbjct: 719 MVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGG 778

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
               G    +  + N++  + +    + Y+IL+   GK+    +   L   M   G    
Sbjct: 779 LESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPK 838

Query: 349 VDTFNTLMISF 359
           V T+N L+  F
Sbjct: 839 VSTYNALISDF 849



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 16/177 (9%)

Query: 10  AFGSFIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           AF ++ +  Y  +  N  TFN+L+ G    G I ++  ++ +M   G  P+  T D L+T
Sbjct: 753 AFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVT 812

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G  +  N    ++L+ EMV      G  + P V  Y +LI    K  ++ Q K+LF EM+
Sbjct: 813 GYGKQSNKVEAVRLYCEMV------GKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQ 866

Query: 128 DKGI-----NANTLLCKKTKL---VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           ++G+       + L+   +KL    E  + L+ M ++G +P   T + +   +   G
Sbjct: 867 NRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPG 923



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 54/250 (21%)

Query: 24  DVT-FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           D+T +N+L++  C  G  R A  ++++M+  G  P+  T + LI G  ++G+++     +
Sbjct: 698 DITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTY 757

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M+     + GI  PNV  + +L+ GL     + ++  +  EMK +GI  + L      
Sbjct: 758 DQML-----YHGI-SPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILV 811

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA----- 189
               K++  VEA RL   M+ +G  P + TY  L++ +  VG ++ A  LF+ M      
Sbjct: 812 TGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVL 871

Query: 190 ------------------------------RKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
                                          KGF P   + S +   + K     EA   
Sbjct: 872 PTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPGMSWEA--- 928

Query: 220 SREMILNGFK 229
            R ++ N +K
Sbjct: 929 -RRLLKNLYK 937


>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Brachypodium distachyon]
          Length = 886

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 160/348 (45%), Gaps = 26/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ++VT  +L+ GFC    +  A ++   MA  G  P+   C  ++ GLR+ G +    +L 
Sbjct: 266 DEVTCRTLVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLA 325

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +    +G+   +  PN+F Y +L++ +CK+ +  +   L  EM DKG+  N +      
Sbjct: 326 CQ----LGELRMV--PNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILI 379

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+  + +A  +L+ M ++G+   ++ Y  L+N  C    +++A+     M   G  
Sbjct: 380 HSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLT 439

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  SYS +I G C+  ++  A+ + R+M   G            V   T+T    I+G 
Sbjct: 440 PNAASYSPVIAGLCRKGDLSGAVELHRKMAEKG------------VAWNTYTFTALINGF 487

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK   + E   LF  +  SN E     FN++I G C  G    A +L++++ C+ L  D 
Sbjct: 488 CKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDN 547

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             Y  LI  L       K    +  +E N   L+  +   L+  F ++
Sbjct: 548 YTYRSLISGLCLTDGASKAKEFVADLENNCSVLNKFSLTALLHGFCRE 595



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 164/342 (47%), Gaps = 27/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTFN++I+G+C+ G+IR A QL  +M   G  P+  T  +LI+GL  T   +   +  
Sbjct: 511 NEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFV 570

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL 137
            ++ N           N F   +L+ G C++  + +   ++ EM   G     I+   ++
Sbjct: 571 ADLENNCSVL------NKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIV 624

Query: 138 CKKTKLVEANR---LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K  ++ +   L   M ++G+ P    +T ++N Y   G +  A+  +D M   G +
Sbjct: 625 YAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMIADGHL 684

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+ L+N  CK++++  A  + +EM+ + F            +P ++T N F+D  
Sbjct: 685 PNTVTYTALVNNLCKSWHLSSAELLCKEMLASHF------------LPNSYTFNCFLDYF 732

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
              G++    +L+  +        V + N+LI+G CK G  + A +L ++ +      D 
Sbjct: 733 ATEGNLETAKDLYFAMLQGFLANIVSV-NTLIKGFCKVGQIQEAIDLISRSTENGFFPDC 791

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++Y+ +IH L K+G I +   L   M   G   D+  +N L+
Sbjct: 792 ISYSTVIHELCKKGDINEAIELWNEMLYKGVKPDIVAYNILI 833



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 142/316 (44%), Gaps = 26/316 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VT+  LI   C  G + DA  ++ +M   G R  V   ++LI    +  ++++ +   
Sbjct: 371 NEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFL 430

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EMV    + G    PN   Y  +I GLC+   +    +L  +M +KG+  NT       
Sbjct: 431 SEMV----EIG--LTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALI 484

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  K+ EA+RL   M +  L P   T+  ++ GYCLVG +  A  L+D M  +G  
Sbjct: 485 NGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLT 544

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD ++Y  LI+G C      +A     ++  N           C+V+   F+    + G 
Sbjct: 545 PDNYTYRSLISGLCLTDGASKAKEFVADLENN-----------CSVL-NKFSLTALLHGF 592

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + E   ++  + +   +L +  F  ++    K    E +  LF ++  K +  D 
Sbjct: 593 CREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEKGVRPDN 652

Query: 315 VAYNILIHALGKEGQI 330
           V +  +I+   KEG +
Sbjct: 653 VFHTCMINMYSKEGNM 668



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 154/350 (44%), Gaps = 29/350 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N  TF +LI GFC    + +AS+L  KM      PN  T + +I G    G++    +L
Sbjct: 475 WNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQL 534

Query: 82  HQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD--KGINANTL-- 136
           + +M+  G+        P+ + Y SLI GLC      + K+   ++++    +N  +L  
Sbjct: 535 YDQMMCRGL-------TPDNYTYRSLISGLCLTDGASKAKEFVADLENNCSVLNKFSLTA 587

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                C++ +L EA  +   M   G    + ++T ++           +  LF  M  KG
Sbjct: 588 LLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEKG 647

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD   ++ +IN Y K  N+ +A+N   EMI +G             +P T T    ++
Sbjct: 648 VRPDNVFHTCMINMYSKEGNMVQALNCWDEMIADGH------------LPNTVTYTALVN 695

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK+ H+     L   +  S+       FN  +      G  E A +L+  +  +  +A
Sbjct: 696 NLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAKDLYFAM-LQGFLA 754

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           ++V+ N LI    K GQI++   L+    ENG   D  +++T++    +K
Sbjct: 755 NIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKK 804



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 27/245 (11%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L K  +   A  L + M+  G+    + YT  +  YC V  ++ A  L   M  +G    
Sbjct: 172 LVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYCEVRNLDGAKGLVARMQDEGDKVS 231

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
              Y+VLI G CKN  V EA++V   M+  G                         ++  
Sbjct: 232 AVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRTLVYGFCRTEELDMALEMTG 291

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCK 291
           +M     VP    C+  +DGL K G V E   L    ++    +   IF  N+L+   CK
Sbjct: 292 DMARLGFVPSEANCSFMLDGLRKKGRVEEAFRL--ACQLGELRMVPNIFAYNALLNNMCK 349

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G+F  A  L N++S K L  + V Y ILIH+L K G +     +L  M E G  + V  
Sbjct: 350 NGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYP 409

Query: 352 FNTLM 356
           +N+L+
Sbjct: 410 YNSLI 414



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 57/290 (19%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG--------------------------- 54
           LN  +  +L+ GFC EG + +A  +  +MA +G                           
Sbjct: 580 LNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCVL 639

Query: 55  --------CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSL 106
                    RP+      +I    + GNM   L    EM+         + PN   Y +L
Sbjct: 640 FREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMI------ADGHLPNTVTYTAL 693

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGI--NANTLLC-----KKTKLVEANRLLELMMQRGLN 159
           ++ LCK   +   + L  EM       N+ T  C          +E  + L   M +G  
Sbjct: 694 VNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAKDLYFAMLQGFL 753

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
             I +   L+ G+C VG++  AI L       GF PD  SYS +I+  CK  ++ EA+ +
Sbjct: 754 ANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINEAIEL 813

Query: 220 SREMILNGFKK---IFNEM-KLCNVVPETFTC-NIFID----GLCKNGHV 260
             EM+  G K     +N + + CN+  E+  C  I+ID    G+  N H 
Sbjct: 814 WNEMLYKGVKPDIVAYNILIRWCNIHGESDKCLGIYIDMVKKGVQPNWHT 863


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 165/367 (44%), Gaps = 62/367 (16%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +++ TF  +I  F  +G    A    +++   G  PN+     +I GL + G++    ++
Sbjct: 238 VDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEM 297

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINANTL---- 136
            +EMV      G  +KPNV+ + SLIDGLCK    ++   LF+++ + +    N L    
Sbjct: 298 LEEMV------GKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTA 351

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                C++ KL  A  LL  M ++GL P   TYT L++G+C  G    A  L + M+ +G
Sbjct: 352 MISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEG 411

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F P++ +Y+ ++NG CK   V+EA  +  +   NG K            P+ FT NI + 
Sbjct: 412 FSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLK------------PDKFTYNILMS 459

Query: 253 GLCKNGHVLEVMELF---------PTLE--------------ISNCELFVE--------- 280
             CK  ++ + + LF         P +               +   E+F E         
Sbjct: 460 EHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIP 519

Query: 281 ---IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               + S+I G C+ G   +A + F++LS      D + Y  +I  L K+ +  +   L 
Sbjct: 520 TNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLY 579

Query: 338 LSMEENG 344
            SM E G
Sbjct: 580 DSMIEKG 586



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 153/336 (45%), Gaps = 37/336 (11%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   +     P N + F  +I+G C  G+I+ A +++++M   G +PNV T  +LI
Sbjct: 259 ALWYFRRLVDMGLEP-NLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLI 317

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G      +L  ++V         +KPNV  Y ++I G C++  +++ + L   M
Sbjct: 318 DGLCKKGWTEKAFRLFLKLVRSEN-----HKPNVLTYTAMISGYCREDKLNRAEMLLSRM 372

Query: 127 KDKGI--NANTLL------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K++G+  N NT        CK      A  L+ LM   G +P + TY  ++NG C  G+V
Sbjct: 373 KEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRV 432

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------- 230
             A  + +   + G  PD F+Y++L++ +CK  N+ +A+ +  +M+  G +         
Sbjct: 433 QEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTL 492

Query: 231 ---------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                           F E     ++P   T    I G C+ G++   M+ F  L    C
Sbjct: 493 IAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGC 552

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
                 + ++I G CK    + A  L++ +  K LV
Sbjct: 553 APDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLV 588



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 158/371 (42%), Gaps = 50/371 (13%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM-VNG 88
           +++ F   G +++A ++V +M   G  PN  T + +I      G +     L +EM V G
Sbjct: 141 MVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRG 200

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVD--------------------------QTKDL 122
           +      Y+  V  Y  + + L  D+ +                            T+ L
Sbjct: 201 VQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRAL 260

Query: 123 --FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
             F  + D G+  N +        LCK+  + +A  +LE M+ +G  P ++T+T L++G 
Sbjct: 261 WYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGL 320

Query: 173 CLVGKVNVAIALFDSMAR-KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           C  G    A  LF  + R +   P+V +Y+ +I+GYC            RE  LN  + +
Sbjct: 321 CKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYC------------REDKLNRAEML 368

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            + MK   +VP T T    IDG CK G+     +L   +        +  +N+++ G CK
Sbjct: 369 LSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCK 428

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  + A ++        L  D   YNIL+    K+  I++   L   M + G   D+ +
Sbjct: 429 RGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHS 488

Query: 352 FNTLMISFLQK 362
           + TL+  F ++
Sbjct: 489 YTTLIAVFCRE 499



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 144/329 (43%), Gaps = 58/329 (17%)

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--- 135
           LK   EMV  M + G +  PN      +I    +  LV+  + LF EM  +G+  ++   
Sbjct: 151 LKEAVEMVIEMHNQGLV--PNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPDSISY 208

Query: 136 -----LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                + CK   ++EA++ L +M++RG      T+T +++ +   G    A+  F  +  
Sbjct: 209 RVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVD 268

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  P++ +++ +I G CK  ++++A  +  EM+  G+K            P  +T    
Sbjct: 269 MGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWK------------PNVYTHTSL 316

Query: 251 IDGLCKNGHVLEVMELFPTL------------------------EISNCELFVE------ 280
           IDGLCK G   +   LF  L                        +++  E+ +       
Sbjct: 317 IDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQG 376

Query: 281 ------IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
                  + +LI G CK G FE A +L N +S +    ++  YN +++ L K G++++  
Sbjct: 377 LVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAY 436

Query: 335 YLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +L    +NG   D  T+N LM    ++E
Sbjct: 437 KMLEDGFQNGLKPDKFTYNILMSEHCKQE 465



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 51/231 (22%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+ +LI G C  GN   A  L+  M++ G  PN+ T + ++ GL + G +    K+ 
Sbjct: 380 NTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKML 439

Query: 83  QE-MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------- 134
           ++   NG+       KP+ F Y  L+   CK   + Q   LF +M   GI  +       
Sbjct: 440 EDGFQNGL-------KPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTL 492

Query: 135 -TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI----------- 182
             + C++ ++ E+    E  ++ G+ P   TYT ++ GYC  G + +A+           
Sbjct: 493 IAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGC 552

Query: 183 ------------------------ALFDSMARKGFMPDVFSYSVLINGYCK 209
                                   +L+DSM  KG +P   +   L   YCK
Sbjct: 553 APDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYCK 603


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 170/353 (48%), Gaps = 34/353 (9%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQ-LVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           D  F S + G C    + DA+  L+ K + FGCR      + L+  L   G     + L 
Sbjct: 10  DAGFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDAVALF 69

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +  +       G+Y P+V+ +  +I G+C+   + +  +L   M + G + +T+      
Sbjct: 70  ESWIQD-----GLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILV 124

Query: 137 --LCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             LC+  ++ + + +L  + + G+  P + TYT +++GYC  G++  A ++++ M + G 
Sbjct: 125 DGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGT 184

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+  +Y+VLINGY K  ++E A+ +  ++IL+            +  P+  T N  IDG
Sbjct: 185 RPNTVTYNVLINGYGKALDMESAVRMYWQLILH------------SCPPDVVTFNSLIDG 232

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C+ G + + M ++  +   + +  V  F+ +I   C       A  L  +L   N+ AD
Sbjct: 233 YCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLREL---NMRAD 289

Query: 314 VVA----YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +V     YN +I  L K G++ + N ++  MEE GC  D  T+  L+I    K
Sbjct: 290 IVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMK 342



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 159/340 (46%), Gaps = 24/340 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F S+I+      +  +FN +IKG C  GN++ A +LV++M  FGC P+  T + L+
Sbjct: 65  AVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILV 124

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL R   +N   K H+ +     D  G+  PNV  Y S+I G CK   +     ++ +M
Sbjct: 125 DGLCRVKQVN---KGHEVLRRLQRD--GVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDM 179

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G   NT+          K   +  A R+   ++     P + T+  L++GYC  G++
Sbjct: 180 LQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQL 239

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + A+ ++  M +    P+V+++S++I+  C      EA+++ RE+ +             
Sbjct: 240 DDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRA----------- 288

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
           ++VP+TF  N  ID LCK G V E   +   +E   C      +  LI G C  G    A
Sbjct: 289 DIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEA 348

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
             LF+K+       D +  N  I  + K G   + + ++L
Sbjct: 349 VTLFHKMVETGCRPDNITINSFISCVLKAGMPNEVHQIML 388


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 166/373 (44%), Gaps = 50/373 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG-LRRTGNMNLTLKLHQ 83
           VT+N + K  C EG +  A Q++ +M   G   + +  ++++   LR TG +++ L+L +
Sbjct: 357 VTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIR 416

Query: 84  EMV--------------------NGMGD---------FGGIYKPNVFCYGSLIDGLCKDR 114
           EMV                     G  +          G     N+    +LI GLC+  
Sbjct: 417 EMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGN 476

Query: 115 LVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYT 166
            + +   +   M D G+  + +         CK +K+ EA +L + M++RG  P +FT+ 
Sbjct: 477 NMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFN 536

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
             L  YC +GKV   + L D M  +G  PD+ +Y  +I+GYCK  +V +A     E+I N
Sbjct: 537 TFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKN 596

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
           G +            P     N  I G  +NG + + + +  T++ +  +     +NSL+
Sbjct: 597 GLR------------PNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLM 644

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
              C  G+ E A E+F +   KN+   V+ Y I+I    K G+I +       M      
Sbjct: 645 YWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIR 704

Query: 347 LDVDTFNTLMISF 359
            +  T+ TLM ++
Sbjct: 705 PNKMTYTTLMYAY 717



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 139/308 (45%), Gaps = 26/308 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N  T N+LI G C   N+++A++++K M   G   +  T + +I    +   M   ++L
Sbjct: 460 VNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQL 519

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             +M+         +KP++F + + +   C    V+    L  +MK +G+  + +     
Sbjct: 520 RDDMIKRG------FKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTI 573

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               CK   + +AN+ L  +++ GL P    Y  L+ GY   G ++ AI + D+M   G 
Sbjct: 574 IDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGI 633

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P   +Y+ L+   C    VEEA            K+IF +  L N+        I I G
Sbjct: 634 QPTPITYNSLMYWMCHAGLVEEA------------KEIFAQCILKNIELGVIGYTIIIQG 681

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK G + E +  F  +   +       + +L+   CK G  E A +LF+++    +V D
Sbjct: 682 FCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPD 741

Query: 314 VVAYNILI 321
            V+YN LI
Sbjct: 742 TVSYNTLI 749



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 129/274 (47%), Gaps = 29/274 (10%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            SK+  A+      I+R ++P +  TFN+ ++ +C  G + D   L+ +M + G +P++ 
Sbjct: 510 ASKMEEAIQLRDDMIKRGFKP-DLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIV 568

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           T  T+I G  +  +++   K   E++ NG+       +PN   Y +LI G  ++  +   
Sbjct: 569 TYGTIIDGYCKAKDVHKANKYLIELIKNGL-------RPNAVIYNALIGGYGRNGSISDA 621

Query: 120 KDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
             +   MK  GI    +        +C    + EA  +    + + +   +  YT ++ G
Sbjct: 622 IGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQG 681

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           +C +GK++ A+  F  M  +   P+  +Y+ L+  YCK  N EEA             K+
Sbjct: 682 FCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAF------------KL 729

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           F+EM    +VP+T + N  I G C+   + +++E
Sbjct: 730 FDEMVSSGIVPDTVSYNTLISGCCEVDSLDKIVE 763



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 154/366 (42%), Gaps = 62/366 (16%)

Query: 38  GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97
           G++  A+    +++T G  P++ TC+ L+  L   G ++L  K+  EM +     G    
Sbjct: 159 GSLSCAADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEMRD-----GNAVA 213

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+V+ Y  +I  LC+   +D    +  E++  GI    +        LC+  ++ EA +L
Sbjct: 214 PDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQL 273

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              M++  L P I T+  L+NG     +     A+   M   G  P+   Y+ LI  +C+
Sbjct: 274 KGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCR 333

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
             +  EA+ +  EM+  G K+               T N+    LCK G +    ++   
Sbjct: 334 EGHCSEALRLFDEMVSKGIKQT------------VVTYNLIAKALCKEGEMEHAEQILDE 381

Query: 270 LEISNCELFVEIFNSLI----RGC--------------------------------CKFG 293
           + ++   +   +FNS++    RG                                 CK G
Sbjct: 382 MLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRG 441

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A+E++  +  K L  ++   N LIH L +   +K+   +L +M ++G   D  T+N
Sbjct: 442 KHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYN 501

Query: 354 TLMISF 359
            +MI F
Sbjct: 502 -IMIQF 506



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 155/399 (38%), Gaps = 73/399 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N L+   C  G + +A QL  +M     RP++ T   LI GL R         + QE
Sbjct: 252 VTYNVLMDALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQE 311

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M  G G       PN   Y  LI   C++    +   LF EM  KGI    +        
Sbjct: 312 M-EGFG-----ITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKA 365

Query: 137 LCKKTKLVEAN------------------------------------RLLELMMQRGLNP 160
           LCK+ ++  A                                     RL+  M+ R L P
Sbjct: 366 LCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKP 425

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
                T  +   C  GK   A  ++  +  KG   ++ + + LI+G C+  N++EA  V 
Sbjct: 426 NDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVL 485

Query: 221 REMILNGFK-----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           + M+ +G +                       ++ ++M      P+ FT N F+   C  
Sbjct: 486 KAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNL 545

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V +++ L   ++    +  +  + ++I G CK      A++   +L    L  + V Y
Sbjct: 546 GKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIY 605

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N LI   G+ G I     +L +M+ NG      T+N+LM
Sbjct: 606 NALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLM 644



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 153/366 (41%), Gaps = 38/366 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  +IK  C  G I  A  ++ ++   G +P V T + L+  L R+G +    +L   M
Sbjct: 218 TYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRM 277

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
           V G        +P++  +G LI+GL + +   +   +  EM+  GI  N ++        
Sbjct: 278 VEGR------LRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWH 331

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C++    EA RL + M+ +G+   + TY  +    C  G++  A  + D M   G     
Sbjct: 332 CREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHC 391

Query: 198 FSYSVLINGYCKNF-NVEEAMNVSREMILNGFKKIFNEMKLC----------NVVPETF- 245
             ++ ++  + +    ++  + + REM+    K     M  C              E + 
Sbjct: 392 SLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWF 451

Query: 246 ------------TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                       T N  I GLC+  ++ E  ++   +  S  E     +N +I+ CCK  
Sbjct: 452 LVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKAS 511

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A +L + +  +    D+  +N  + A    G+++   +LL  M+  G   D+ T+ 
Sbjct: 512 KMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYG 571

Query: 354 TLMISF 359
           T++  +
Sbjct: 572 TIIDGY 577


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 166/340 (48%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V+FN+L+ GFC  G++  A      M  +G  P+V + + L+ GL   G+M   L    E
Sbjct: 271 VSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEAL----E 326

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TLL--- 137
             N M + G   +P++  Y  L +G     L+     +   M   G+N +    T+L   
Sbjct: 327 FTNDMENHG--VEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICG 384

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+   + E+ +L E M+ +GL   I TYT LL+  C  G+++ A+ L   M   G  PD
Sbjct: 385 HCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPD 444

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +YSVLI+G CK   VEEA+ +  EM     K+I+         P +F C+  I GL +
Sbjct: 445 LLTYSVLIHGLCKRGAVEEAIELYEEMC---SKRIY---------PNSFVCSAIISGLFE 492

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + E    F ++  S+    + ++N +I G  K G    A   + ++  K +   +V 
Sbjct: 493 KGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVT 552

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +N LI+   K+G++ +   LL +++ +G      T+ TLM
Sbjct: 553 FNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLM 592



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 170/389 (43%), Gaps = 60/389 (15%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ VT+  L+   C  G I +A  L+ +M   G +P++ T   LI GL + G +   ++L
Sbjct: 408 LSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIEL 467

Query: 82  HQEM---------------VNGMGDFGGIYKPNVF--------------CYGSLIDGLCK 112
           ++EM               ++G+ + G I +  ++               Y  +IDG  K
Sbjct: 468 YEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAK 527

Query: 113 DRLVDQTKDLFMEMKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFT 164
              + +    + ++ +KGI+      N+L+   CKK KL EA +LL+ +   GL P   T
Sbjct: 528 LGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVT 587

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           YT L+NGYC  G ++    +   M  K   P   +Y+V++ G CK   + E++ + + M 
Sbjct: 588 YTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMY 647

Query: 225 LNG--------------------FKKIF---NEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
             G                     +K F   N+M   ++ P   T N+ I+GLC  G++ 
Sbjct: 648 ARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLK 707

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           +   L  TL+  +  L    + ++I+  C  G  + A   F+++  +     +  Y+ +I
Sbjct: 708 DADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVI 767

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVD 350
           + L K   I    +    M  +G   D D
Sbjct: 768 NRLCKRNLITDAKFFFCMMLTHGIPPDQD 796



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 176/352 (50%), Gaps = 30/352 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N+ T   LI G C +  ++DA   +++       P+V + + L++G  + G++++   
Sbjct: 232 PQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKS 291

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN----TL 136
               M+     +G +  P+V+ Y  L+ GLC    +++  +   +M++ G+  +     +
Sbjct: 292 FFCMMIK----YGLL--PDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNI 345

Query: 137 LCKKTKLV----EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L    +++     A ++++ M+  GLNP + TYT L+ G+C +G +  +  L + M  +G
Sbjct: 346 LANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQG 405

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
               + +Y+VL++  CK+  ++EA+ +  EM + G K            P+  T ++ I 
Sbjct: 406 LKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLK------------PDLLTYSVLIH 453

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFEIASELFNKLSCKNL 310
           GLCK G V E +EL+   E+ +  ++   F  +++I G  + G    A   F+ ++  ++
Sbjct: 454 GLCKRGAVEEAIELYE--EMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDV 511

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             +++ YNI+I    K G I +       + E G +  + TFN+L+  F +K
Sbjct: 512 AEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKK 563



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 128/265 (48%), Gaps = 34/265 (12%)

Query: 99  NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLL 150
           ++  Y SL+  L   R  D   D++ E+K  G+  N          LC++++L +A   L
Sbjct: 202 SIATYNSLLYNL---RHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFL 258

Query: 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
                    P + ++  L++G+C +G V+VA + F  M + G +PDV+SY++L++G C  
Sbjct: 259 RETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVA 318

Query: 211 FNVEEAMNVSREM--------------ILNGFK---------KIFNEMKLCNVVPETFTC 247
            ++EEA+  + +M              + NGF+         K+   M L  + P+  T 
Sbjct: 319 GSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTY 378

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
            I I G C+ G++ E  +L   +     +L +  +  L+   CK G  + A  L +++  
Sbjct: 379 TILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEV 438

Query: 308 KNLVADVVAYNILIHALGKEGQIKK 332
             L  D++ Y++LIH L K G +++
Sbjct: 439 IGLKPDLLTYSVLIHGLCKRGAVEE 463



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 15/202 (7%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           +  +P   +T+  ++KG C EG + ++ QL+K M   G  P+  T +T+I    +  ++ 
Sbjct: 614 KAIKP-TQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQ 672

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +LH +M+          +P+   Y  LI+GLC    +     L + ++D+ I    +
Sbjct: 673 KAFQLHNQMLQHS------LQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKV 726

Query: 137 L--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                    C K  +  A      M++RG    I  Y+ ++N  C    +  A   F  M
Sbjct: 727 AYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMM 786

Query: 189 ARKGFMPDVFSYSVLINGYCKN 210
              G  PD     V++N + ++
Sbjct: 787 LTHGIPPDQDICLVMLNAFHRS 808


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 177/446 (39%), Gaps = 98/446 (21%)

Query: 12  GSFIRRCYRPL---NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           G  +RR +  L   N  TFN +I   C +G + +A  L  +M   GC P+V T ++LI G
Sbjct: 184 GGLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDG 243

Query: 69  LRRTGNMNLTLKLHQEM---------------VNGMGDFGGIYKP--------------N 99
             + G +     L  EM               +N    FG I K               N
Sbjct: 244 YGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMAN 303

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLE 151
           V    + +D  CK+ LV +   LF +M+ +G+  N           CK  +L +A  LL+
Sbjct: 304 VVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLD 363

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            M+ +GL P + TYT +++G C  GKV VA  +   M R G   +   Y+ LI+G+  N 
Sbjct: 364 EMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNK 423

Query: 212 NVEEAMNVSREMI-----------------------LNGFKKIFNEMKLCNVVPETF--- 245
           N E A+++  EM                        L+  K + ++M  C + P T    
Sbjct: 424 NSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYT 483

Query: 246 --------------------------------TCNIFIDGLCKNGHVLEVMELFPTLEIS 273
                                           T    IDGLCK G + E +  F  +   
Sbjct: 484 TIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMREL 543

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             +  V+++ +LI G CK G    A  L N++  K +  D V Y  LI    K+G ++  
Sbjct: 544 GLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGA 603

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
             L   M E G  LD+  +   +  F
Sbjct: 604 FALKAKMIETGLQLDLYCYTCFISGF 629



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 151/328 (46%), Gaps = 28/328 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+  ++ G C EG +  A  ++  M   G + N     TLI G     N    L L 
Sbjct: 373 NVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLL 432

Query: 83  QEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--- 138
            EM N GM       + +V  YG+LI GLCK + +D+ K L  +M D G+  NT++    
Sbjct: 433 NEMKNKGM-------ELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTI 485

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  K  EA  LL  +   GL P + TY  L++G C  G +  AI+ FD M   G 
Sbjct: 486 MDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGL 545

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V  Y+ LI+G+CK  ++ +A+++  EM+  G       M L  VV  +      IDG
Sbjct: 546 DPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKG-------MSLDKVVYTS-----LIDG 593

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             K G +     L   +  +  +L +  +   I G C   + + A  + +++    +  D
Sbjct: 594 HMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPD 653

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSME 341
             AYN LI    K G +++ + L   ME
Sbjct: 654 KTAYNCLIRKYQKLGNMEEASSLQNEME 681



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 155/380 (40%), Gaps = 61/380 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT ++ +  FC EG +R+A +L  +M   G  PN  T  +L+ G  + G ++  + L 
Sbjct: 303 NVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLL 362

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            EMV+      G+  PNV  Y  ++DGLCK+  V    D+   M+  G+ AN LL     
Sbjct: 363 DEMVHQ-----GLV-PNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLI 416

Query: 138 --------------------------------------CKKTKLVEANRLLELMMQRGLN 159
                                                 CK  KL EA  LL  M   GL 
Sbjct: 417 HGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLR 476

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P    YT +++ +   GK + A+AL   +   G  P+V +Y  LI+G CK  ++ EA++ 
Sbjct: 477 PNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAIS- 535

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                       F++M+   + P        IDG CK G + + + L   +      L  
Sbjct: 536 -----------HFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDK 584

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
            ++ SLI G  K G  + A  L  K+    L  D+  Y   I        +++   +L  
Sbjct: 585 VVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSE 644

Query: 340 MEENGCALDVDTFNTLMISF 359
           M   G   D   +N L+  +
Sbjct: 645 MIGTGITPDKTAYNCLIRKY 664



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 144/338 (42%), Gaps = 49/338 (14%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           +R      F++L+      G + DA + + ++      PN  TC+ ++  L R     L 
Sbjct: 128 HRSALPSVFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLV 187

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138
            +L          F  +  PNVF +  +ID LC                           
Sbjct: 188 RRL----------FEHLPAPNVFTFNIVIDFLC--------------------------- 210

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K+ +LVEA  L   M   G +P + TY  L++GY   G++     L   M + G   DV 
Sbjct: 211 KQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVV 270

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y+ LIN + K   +E+A +             F EMK   V+    T + F+D  CK G
Sbjct: 271 TYNALINCFSKFGWIEKAYS------------YFGEMKRLGVMANVVTLSTFVDAFCKEG 318

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            V E M+LF  + +         + SL+ G CK G  + A  L +++  + LV +VV Y 
Sbjct: 319 LVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYT 378

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +++  L KEG++   + +L  ME  G   +   + TL+
Sbjct: 379 VMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLI 416


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 178/420 (42%), Gaps = 75/420 (17%)

Query: 12  GSFIRRCYRPL---NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           G  +RR +  L   N  TFN +I   C EG + +A  L  +M   GC P+V T ++LI G
Sbjct: 173 GRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDG 232

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
             + G ++   +L +EM           K +V  Y +LI+  CK   ++     F  MK 
Sbjct: 233 YGKCGELDEVEQLVEEMRRSG------CKADVVTYNALINCFCKFGRMETAYGYFAAMKR 286

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +G+ AN +         CK+  + EA +L   M  RG+    FTYT L++G C  G+++ 
Sbjct: 287 EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDD 346

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
           AI L D M R+G   +V +Y+VL++G CK   V EA +V R M   G +           
Sbjct: 347 AIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIH 406

Query: 231 -------------IFNEMK-----------------LCNV------------------VP 242
                        + +EMK                 LCNV                   P
Sbjct: 407 GHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEP 466

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
                   +D   K+G V E + +   +  S  +  V  + +LI G CK G  + A   F
Sbjct: 467 NYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHF 526

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           NK+    L  +V AY  L+  L K G + +   L   M   G +LD   +  L+  +L++
Sbjct: 527 NKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQ 586



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 162/347 (46%), Gaps = 30/347 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF++ +  FC EG +R+A +L  +M   G   N  T   LI G  + G ++  + L 
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLL 351

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            EMV       G+   NV  Y  L+DGLCK+R V + +D+   M+  G+ AN LL   T 
Sbjct: 352 DEMVRQ-----GV-PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELL--YTT 403

Query: 143 LVEAN----------RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+  +           LL  M  +GL   I  Y  L+ G C V K++ A +L   M   G
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+   Y+ +++   K+  V EA+ + ++++ +GF+            P   T    ID
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQ------------PNVITYCALID 511

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK G + E +  F  +     +  V+ + +L+ G CK G    A +LFN++  K +  
Sbjct: 512 GLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSL 571

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           D V Y  L+    K+G +     L   M ++G  LD+  +   +  F
Sbjct: 572 DKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGF 618



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 153/330 (46%), Gaps = 26/330 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PLN VT+  L+ G C E  + +A  +++ M   G R N     TLI G     N    L 
Sbjct: 360 PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALG 419

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-- 138
           L  EM N   +       ++  YG+LI GLC    +D+ K L  +M + G+  N ++   
Sbjct: 420 LLSEMKNKGLEL------DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473

Query: 139 ------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K  K+ EA  +L+ ++  G  P + TY  L++G C  G ++ AI+ F+ M   G
Sbjct: 474 MMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLG 533

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+V +Y+ L++G CKN  + EA+ +  EM+  G       M L  VV   +T    +D
Sbjct: 534 LDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG-------MSLDKVV---YTA--LLD 581

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G  K G++ +   L   +  S  +L +  +   I G C   +   A E+F+++    +  
Sbjct: 582 GYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAP 641

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           D   YN LI    K G +++   L   ME 
Sbjct: 642 DRAVYNCLISKYQKLGNLEEAISLQDEMER 671



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 151/337 (44%), Gaps = 30/337 (8%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           ++L+      G + DA + V ++      PN  TC+ ++  L R  +  L  +L      
Sbjct: 126 DTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRL------ 179

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CK 139
               F  +  PNVF +  +ID LCK+  + + + LF  MK+ G     +  N+L+    K
Sbjct: 180 ----FEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGK 235

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             +L E  +L+E M + G    + TY  L+N +C  G++  A   F +M R+G M +V +
Sbjct: 236 CGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVT 295

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           +S  ++ +CK   V EAM            K+F +M++  +    FT    IDG CK G 
Sbjct: 296 FSTFVDAFCKEGLVREAM------------KLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + + + L   +      L V  +  L+ G CK      A ++   +    + A+ + Y  
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           LIH        +K   LL  M+  G  LD+  +  L+
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALI 440


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 178/420 (42%), Gaps = 75/420 (17%)

Query: 12  GSFIRRCYRPL---NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           G  +RR +  L   N  TFN +I   C EG + +A  L  +M   GC P+V T ++LI G
Sbjct: 173 GRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDG 232

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
             + G ++   +L +EM           K +V  Y +LI+  CK   ++     F  MK 
Sbjct: 233 YGKCGELDEVEQLVEEMRRSG------CKADVVTYNALINCFCKFGRMETAYGYFAAMKR 286

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +G+ AN +         CK+  + EA +L   M  RG+    FTYT L++G C  G+++ 
Sbjct: 287 EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDD 346

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
           AI L D M R+G   +V +Y+VL++G CK   V EA +V R M   G +           
Sbjct: 347 AIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIH 406

Query: 231 -------------IFNEMK-----------------LCNV------------------VP 242
                        + +EMK                 LCNV                   P
Sbjct: 407 GHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEP 466

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
                   +D   K+G V E + +   +  S  +  V  + +LI G CK G  + A   F
Sbjct: 467 NYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHF 526

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           NK+    L  +V AY  L+  L K G + +   L   M   G +LD   +  L+  +L++
Sbjct: 527 NKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQ 586



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 32/352 (9%)

Query: 10  AFGSF--IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A+G F  ++R     N VTF++ +  FC EG +R+A +L  +M   G   N  T   LI 
Sbjct: 277 AYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLID 336

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G  + G ++  + L  EMV       G+   NV  Y  L+DGLCK+R V + +D+   M+
Sbjct: 337 GTCKAGRLDDAIVLLDEMVRQ-----GV-PLNVVTYTVLVDGLCKERKVAEAEDVLRMME 390

Query: 128 DKGINANTLLCKKTKLVEAN----------RLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
             G+ AN LL   T L+  +           LL  M  +GL   I  Y  L+ G C V K
Sbjct: 391 KAGVRANELL--YTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHK 448

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           ++ A +L   M   G  P+   Y+ +++   K+  V EA+ + ++++ +GF+        
Sbjct: 449 LDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQ-------- 500

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
               P   T    IDGLCK G + E +  F  +     +  V+ + +L+ G CK G    
Sbjct: 501 ----PNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNE 556

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           A +LFN++  K +  D V Y  L+    K+G +     L   M ++G  LD+
Sbjct: 557 AVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDL 608



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 153/330 (46%), Gaps = 26/330 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PLN VT+  L+ G C E  + +A  +++ M   G R N     TLI G     N    L 
Sbjct: 360 PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALG 419

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-- 138
           L  EM N   +       ++  YG+LI GLC    +D+ K L  +M + G+  N ++   
Sbjct: 420 LLSEMKNKGLEL------DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473

Query: 139 ------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K  K+ EA  +L+ ++  G  P + TY  L++G C  G ++ AI+ F+ M   G
Sbjct: 474 MMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLG 533

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+V +Y+ L++G CKN  + EA+ +  EM+  G       M L  VV   +T    +D
Sbjct: 534 LDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG-------MSLDKVV---YTA--LLD 581

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G  K G++ +   L   +  S  +L +  +   I G C   +   A E+F+++    +  
Sbjct: 582 GYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAP 641

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           D   YN LI    K G +++   L   ME 
Sbjct: 642 DRAVYNCLISKYQKLGNLEEAISLQDEMER 671



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 151/337 (44%), Gaps = 30/337 (8%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           ++L+      G + DA + V ++      PN  TC+ ++  L R  +  L  +L      
Sbjct: 126 DTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRL------ 179

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CK 139
               F  +  PNVF +  +ID LCK+  + + + LF  MK+ G     +  N+L+    K
Sbjct: 180 ----FEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGK 235

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             +L E  +L+E M + G    + TY  L+N +C  G++  A   F +M R+G M +V +
Sbjct: 236 CGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVT 295

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           +S  ++ +CK   V EAM            K+F +M++  +    FT    IDG CK G 
Sbjct: 296 FSTFVDAFCKEGLVREAM------------KLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + + + L   +      L V  +  L+ G CK      A ++   +    + A+ + Y  
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           LIH        +K   LL  M+  G  LD+  +  L+
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALI 440


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 160/349 (45%), Gaps = 41/349 (11%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I R   PL+  TFN +++  C  G    A +L+++M +    PN  T +T+I G    G 
Sbjct: 107 IFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMPS----PNAVTYNTVIAGFCARGR 162

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-INA 133
           +   +++ +EM     + GGI  P+ + Y ++I G CK   V+    +F EM  +G +  
Sbjct: 163 VQAGIEIMREMR----ERGGI-APDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEP 217

Query: 134 NTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           N ++        C +  L  A R    M+ RG++  + TY   ++   + G+   A AL 
Sbjct: 218 NAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALV 277

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---------------- 229
           + M  KG  PD F+Y++LINGYCK    ++AM +   M+  G +                
Sbjct: 278 EEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMK 337

Query: 230 -------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                  ++FN+     + P+ F  N  I+  C  G +    E+   +E          +
Sbjct: 338 GMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTY 397

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
           N+L+RG C  G  + A  L  +++ + +  D+V+YN LI     +G IK
Sbjct: 398 NTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIK 446



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 166/387 (42%), Gaps = 62/387 (16%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRT 72
            +R+   P N VT+N++I GFC  G ++   +++++M   G   P+  T  T+I+G  + 
Sbjct: 138 LLRQMPSP-NAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKV 196

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
           G +    K+  EM+       G  +PN   Y +LI G C    ++       EM D+G++
Sbjct: 197 GKVEDATKVFDEMLTE-----GKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVS 251

Query: 133 ANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
                       L  + +  EA+ L+E M ++GL P  FTY  L+NGYC  GK   A+ +
Sbjct: 252 MTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKM 311

Query: 185 FDSMA-----------------------------------RKGFMPDVFSYSVLINGYCK 209
           F+ M                                    R+G  PD+F Y+ LIN +C 
Sbjct: 312 FEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCT 371

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
             +++ A             +I  EM+   + P+  T N  + GLC  G + E   L   
Sbjct: 372 GGDMDRAF------------EIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEE 419

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +     +  +  +N+LI G    G  + A ++ +++  K     ++ YN +I  L   GQ
Sbjct: 420 MTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQ 479

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
                 L+  M  NG   D  T+ +L+
Sbjct: 480 GGDAEDLVKEMVGNGITPDDSTYISLI 506



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 16/194 (8%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           T+  +L   C  GK   A+ L   M      P+  +Y+ +I G+C    V+  + + REM
Sbjct: 118 TFNIMLRHLCTAGKPVRALELLRQMPS----PNAVTYNTVIAGFCARGRVQAGIEIMREM 173

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT-LEISNCELFVEIF 282
              G            + P+ +T    I G CK G V +  ++F   L     E    ++
Sbjct: 174 RERG-----------GIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMY 222

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N+LI G C  G  E+A     ++  + +   V  YN+ +H L  EG+  + + L+  M E
Sbjct: 223 NALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGE 282

Query: 343 NGCALDVDTFNTLM 356
            G A D  T+N L+
Sbjct: 283 KGLAPDAFTYNILI 296



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 14/190 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ SLI    M+G +++  +L       G RP++   + LI      G+M+   ++  E
Sbjct: 325 VTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGE 384

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCK 139
           M            P+   Y +L+ GLC    +D+ + L  EM  +GI       NTL+  
Sbjct: 385 MEKKR------ITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISG 438

Query: 140 ---KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
              K  + +A ++ + MM +G NP + TY  ++ G CL G+   A  L   M   G  PD
Sbjct: 439 YSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPD 498

Query: 197 VFSYSVLING 206
             +Y  LI G
Sbjct: 499 DSTYISLIEG 508



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           +T+N++IKG C+ G   DA  LVK+M   G  P+ +T  +LI GL
Sbjct: 465 LTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGL 509


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 178/382 (46%), Gaps = 47/382 (12%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L D  FNSLI+ +   G  +++ Q+   M + G  P+V T ++L+  L + G  N+   +
Sbjct: 154 LEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSV 213

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-----DKGINANTL 136
             EM++  G       P+ + +  LI G CK+ +VD+    F EM         +  NTL
Sbjct: 214 FDEMLSTYG-----VTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTL 268

Query: 137 ---LCKKTKLVEANRLLELMMQRG--LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
              LC+  K+  A+ ++  M+++   LNP + TYT L+ GYC+  +++ A+ +F+ M  K
Sbjct: 269 VDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSK 328

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI------------------------LNG 227
           G  P+  +Y+ LI G C+   +++   +    +                        LN 
Sbjct: 329 GLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLND 388

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL---EI----SNCELFVE 280
             ++F +M + NV P++ T ++ I  LC+ G+     +LF  L   EI      C   V 
Sbjct: 389 ALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVA 448

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            + S+    C+ G    A  +F +L  K    D +++ ILI    +EG  +    LL+ M
Sbjct: 449 AYKSMFEFLCRNGKTAKAERVFRQL-MKRGTQDPLSFKILIKGHCREGTFEAGYELLVLM 507

Query: 341 EENGCALDVDTFNTLMISFLQK 362
                  D++T+ +L+   LQK
Sbjct: 508 LRRDFVPDLETYQSLIDGLLQK 529



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 160/353 (45%), Gaps = 33/353 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI+GFC    + +  +  K+M+ F C P++ T +TL+ GL R G +N+       +
Sbjct: 229 TFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIA----HNV 284

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           VNGM        P+V  Y +L+ G C    +D+   +F EM  KG+  N +        L
Sbjct: 285 VNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGL 344

Query: 138 CKKTKLVEANRLLE-LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           C+  K+ +  ++ E  +   G  P   T   L+N +C  G +N A+ +F+ M      PD
Sbjct: 345 CEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPD 404

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG--- 253
             +YSVLI   C+  N E A            +++F+E+    ++     C   +     
Sbjct: 405 SATYSVLIRNLCQRGNFERA------------EQLFDELSEKEILLRDDGCTPLVAAYKS 452

Query: 254 ----LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
               LC+NG   +   +F  L     +  +  F  LI+G C+ G FE   EL   +  ++
Sbjct: 453 MFEFLCRNGKTAKAERVFRQLMKRGTQDPLS-FKILIKGHCREGTFEAGYELLVLMLRRD 511

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            V D+  Y  LI  L ++G+       L  M ++    +  TF++++   L K
Sbjct: 512 FVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSILARLLAK 564



 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 14/186 (7%)

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLIN--GYCKNFNVEEAMNVSREMILNGFKKI 231
           L+   + A+  F+     GF  +  SY +++   G  +N NV      S +   NG  K+
Sbjct: 95  LIKTPSKALQFFNWAPELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRSNGTVKL 154

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                      E    N  I    K G   E +++F +++       V  FNSL+    K
Sbjct: 155 -----------EDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLK 203

Query: 292 FGIFEIASELFNK-LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
            G   +A  +F++ LS   +  D   +NILI    K   + +       M    C  D+ 
Sbjct: 204 RGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLV 263

Query: 351 TFNTLM 356
           T+NTL+
Sbjct: 264 TYNTLV 269


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 151/331 (45%), Gaps = 49/331 (14%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+  +     +  AS +  +M   GC PN  T   L+ GL + G +    +++
Sbjct: 357 NVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVY 416

Query: 83  QEMVNGMGDFGGIY----------KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
            +++    + G  +           PNV  YG+LIDGLCK                    
Sbjct: 417 TKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAH------------------ 458

Query: 133 ANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                    K+V+A  LL+ M+  G  P    Y  L++G+C VGK++ A  +F  M++ G
Sbjct: 459 ---------KVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCG 509

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           ++P V +Y+ LI+   K+  ++ AM            K+ ++M   +  P   T    ID
Sbjct: 510 YLPTVHTYTSLIDAMFKDRRLDLAM------------KVLSQMVESSCTPNVVTYTAMID 557

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLC+ G   + ++L   +E   C   V  + +LI G  K G  +++ +LF ++S K    
Sbjct: 558 GLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAP 617

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           + V Y +LI+     G + + + LL  M++ 
Sbjct: 618 NYVTYRVLINHCCAAGLLDEAHSLLSEMKQT 648



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 167/354 (47%), Gaps = 38/354 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI G C    + DA +L+  M + GC PN    D LI G  + G ++      
Sbjct: 443 NVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNA---- 498

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QE+   M   G  Y P V  Y SLID + KDR +D    +  +M +     N +      
Sbjct: 499 QEVFLRMSKCG--YLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMI 556

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +  +A +LL +M ++G +P + TYT L++G    GKV++++ LF  M+ KG  
Sbjct: 557 DGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCA 616

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIF-------N 233
           P+  +Y VLIN  C    ++EA ++  EM              ++ GF K F        
Sbjct: 617 PNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLE 676

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV---EIFNSLIRGCC 290
           E++    VP      + ID   K G + E +EL   +   +  L +   +++ SLI+  C
Sbjct: 677 ELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALC 736

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
                E A EL+++++ K +V ++  +  LI  L K  +  +   L  S+ + G
Sbjct: 737 LASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEG 790



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 159/382 (41%), Gaps = 53/382 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V   +  +  C  G    A Q++K M   G  P+ +T   +IT L     +     L
Sbjct: 251 LNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLL 310

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            QEM   +G       P+V+ Y  LID  CK  L++Q +  F EM+  G +AN +     
Sbjct: 311 FQEM-KSVG-----VNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTAL 364

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL--------- 184
                K  +L +A+ +   M+  G  P   TY+ L++G C  G++  A  +         
Sbjct: 365 LHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSD 424

Query: 185 -------FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG---------- 227
                  F+        P+V +Y  LI+G CK   V +A  +   M+ NG          
Sbjct: 425 NVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDA 484

Query: 228 -------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
                         +++F  M  C  +P   T    ID + K+  +   M++   +  S+
Sbjct: 485 LIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESS 544

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V  + ++I G C+ G  + A +L + +  K    +VV Y  LI  LGK G++    
Sbjct: 545 CTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSL 604

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            L + M   GCA +  T+  L+
Sbjct: 605 QLFIQMSTKGCAPNYVTYRVLI 626



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 140/371 (37%), Gaps = 63/371 (16%)

Query: 49  KMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG--------MGDFGGI----- 95
           ++  FG RP+  T + L+  L   G M++  ++ +EM           +G F        
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 96  -------------YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-----DKGINANTLL 137
                        +K +      +I GL +  L D+       M+        +   TLL
Sbjct: 90  RWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLL 149

Query: 138 C---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               KK +L    R++ +MM+ G NP    +  L++ YC       A  L   MA  G  
Sbjct: 150 TGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCP 209

Query: 195 PDVFSYSVLINGYCKNFNVEE------AMNVSREMI--------------------LNGF 228
           P   +Y++ I   C    +        A  V  EM+                    +  F
Sbjct: 210 PGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKF 269

Query: 229 KKIFNEMKLC---NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
              F  +K+      VP+T T +  I  LC+   V +   LF  ++       V  +  L
Sbjct: 270 DMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTIL 329

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I   CK G+ E A   F+++      A+VV Y  L+HA  K  Q+ + + +   M + GC
Sbjct: 330 IDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGC 389

Query: 346 ALDVDTFNTLM 356
             +  T++ L+
Sbjct: 390 PPNTITYSALV 400


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 155/335 (46%), Gaps = 45/335 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+  F  EG IR A  +   +  +G RP+V + +TL+ G  + G+++
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L   M        G+ +P+V+ Y  LI+GLCK+                       
Sbjct: 189 EGFRLKNAM-----QASGV-QPDVYTYSVLINGLCKE----------------------- 219

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
               +K+ +AN L + M+  GL P   T+T L++G+C  G+V++A+ ++  M  +   PD
Sbjct: 220 ----SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPD 275

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CK  ++++A ++  EM + G K            P+  T    IDG CK
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLK------------PDKITYTTLIDGSCK 323

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           Y ++I+   K+G +   + LL  M+ +G    V T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 162/365 (44%), Gaps = 27/365 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           A   F + +      ++D+  F+ LI  +   G +RDA +  +       R    TC  +
Sbjct: 48  ASAVFAAJLETKGTQISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKV 107

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I  L +     L    ++E +         Y  +++ +  L+    K+  +   + +F  
Sbjct: 108 IEHLMKLKYFKLVWGFYEESLECG------YPASLYFFNILMHSFVKEGEIRLAQSVFDA 161

Query: 126 MKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
           +   G+       NTL+    K   L E  RL   M   G+ P ++TY+ L+NG C   K
Sbjct: 162 ITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           ++ A  LFD M   G +P+  +++ LI+G+CKN  V+ AM            +I+ +M  
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAM------------EIYXQMLS 269

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
            ++ P+  T N  I GLCK G + +  +L   + +   +     + +LI G CK G  E 
Sbjct: 270 QSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLET 329

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           A E   ++  +N+  D VAY  LI  L +EG+      +L  M   G   ++ T+  ++ 
Sbjct: 330 AFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIIN 389

Query: 358 SFLQK 362
            F +K
Sbjct: 390 EFCKK 394


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 168/371 (45%), Gaps = 37/371 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I+G+C    + +A +L++ M + GC P+  +  T++  L +   +     L 
Sbjct: 311 NVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLM 370

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M    G       P+   Y +LI  L K    D+      + ++KG   + L      
Sbjct: 371 KKMAKEHG-----LVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIV 425

Query: 137 --LCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             LCK+ ++ EA  L+  M+ +G   P + TYT ++NG+C +G+V+ A  L   M   G 
Sbjct: 426 HALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGH 485

Query: 194 MPDVFSYSVLINGYC---KNFNVEEAMNVSRE-----------MILNGFKK--------- 230
            P+  SY+ L+NG C   K+    E MN+S E           +I++G ++         
Sbjct: 486 KPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACD 545

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +  EM L    P     N+ +  LC++G   E  +         C + V  F ++I G C
Sbjct: 546 VVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFC 605

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           +    + A  + + +   N  ADV  Y  L+  LGK+G+I +   L+  M   G      
Sbjct: 606 QNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPV 665

Query: 351 TFNTLMISFLQ 361
           T+ T++  + Q
Sbjct: 666 TYRTVIHRYCQ 676



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            F+ ++  +   G +RDA +++  M   G  PN+  C+T I    R   +   L+  + M
Sbjct: 244 AFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERM 303

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                   GI  PNV  Y  +I G C    V++  +L  +M  KG   + +        L
Sbjct: 304 -----QVVGIV-PNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYL 357

Query: 138 CKKTKLVEANRLLELMM-QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           CK+ ++VE   L++ M  + GL P   TY  L++        + A+        KGF  D
Sbjct: 358 CKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRID 417

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM---------------ILNGF---------KKIF 232
              YS +++  CK   + EA ++  EM               ++NGF         KK+ 
Sbjct: 418 KLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLL 477

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
             M      P T +    ++G+C+ G  LE  E+    E          ++ ++ G  + 
Sbjct: 478 QVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRRE 537

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G    A ++  ++  K      V  N+L+ +L ++G+  +    +      GCA++V  F
Sbjct: 538 GKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNF 597

Query: 353 NTLMISFLQKE 363
            T++  F Q +
Sbjct: 598 TTVIHGFCQND 608



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 139/293 (47%), Gaps = 28/293 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+ +++ GFC  G +  A +L++ M T G +PN  +   L+ G+ RTG    +L+
Sbjct: 451 PPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGK---SLE 507

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
             +EM+N   +    + PN   Y  ++ GL ++  + +  D+  EM  KG     +  N 
Sbjct: 508 A-REMMNMSEEH--WWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINL 564

Query: 136 L---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L   LC+  +  EA + +E  + +G    +  +T +++G+C   +++ A+++ D M    
Sbjct: 565 LLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLIN 624

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              DVF+Y+ L++   K   + EA  + ++M+  G            + P   T    I 
Sbjct: 625 KHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKG------------IDPTPVTYRTVIH 672

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
             C+ G V +++ +   + IS  +    I+N +I   C  G  E A  L  K+
Sbjct: 673 RYCQMGKVDDLVAILEKM-ISRQKCRT-IYNQVIEKLCVLGKLEEADTLLGKV 723



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 123/281 (43%), Gaps = 22/281 (7%)

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--------NANTLLCKK 140
             D    Y+ +   Y S+++ L K +L   ++ + + MK +GI               + 
Sbjct: 196 WADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRA 255

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            +L +A ++L LM + G+ P +      ++ +    ++  A+   + M   G +P+V +Y
Sbjct: 256 GQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTY 315

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + +I GYC    VEEA+ +  +M   G             +P+  +    +  LCK   +
Sbjct: 316 NCMIRGYCDLHRVEEAIELLEDMHSKG------------CLPDKVSYYTIMGYLCKEKRI 363

Query: 261 LEVMELFPTLEISNCELFVEI-FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +EV +L   +   +  +  ++ +N+LI    K    + A         K    D + Y+ 
Sbjct: 364 VEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSA 423

Query: 320 LIHALGKEGQIKKENYLLLSMEENG-CALDVDTFNTLMISF 359
           ++HAL KEG++ +   L+  M   G C  DV T+  ++  F
Sbjct: 424 IVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGF 464



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 142/352 (40%), Gaps = 64/352 (18%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T K L A           + P N +T++ ++ G   EG + +A  +V++M   G  P   
Sbjct: 502 TGKSLEAREMMNMSEEHWWSP-NSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPV 560

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT- 119
             + L+  L R G  +   K  +E +N           NV  + ++I G C++  +D   
Sbjct: 561 EINLLLQSLCRDGRTHEARKFMEECLNKGCAI------NVVNFTTVIHGFCQNDELDAAL 614

Query: 120 ---KDLFMEMKDKGINANTLLC----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
               D+++  K   +   T L     KK ++ EA  L++ M+ +G++P   TY  +++ Y
Sbjct: 615 SVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRY 674

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C +GKV+  +A+ + M  +     +  Y+ +I   C    +EEA  +  +++    +   
Sbjct: 675 CQMGKVDDLVAILEKMISRQKCRTI--YNQVIEKLCVLGKLEEADTLLGKVLRTASRS-- 730

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                     +  TC   ++G  K G                                  
Sbjct: 731 ----------DAKTCYALMEGYLKKG-------------------------------VPL 749

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             +++A  +FN    +NL+ DV     L   L  +G++ + + L+L + E G
Sbjct: 750 SAYKVACRMFN----RNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERG 797


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 176/406 (43%), Gaps = 79/406 (19%)

Query: 10  AFGSFIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A G F    +R L  + VT+NS+I G+   G + D     ++M +  C P+V T +TLI 
Sbjct: 152 ASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLIN 211

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
              + G +   L+  +EM        G+ KPNV  Y +L+D  CK+ ++ Q    +++M+
Sbjct: 212 CFCKFGKLPKGLEFFREMKQS-----GL-KPNVVSYSTLVDAFCKEDMMQQALKFYVDMR 265

Query: 128 DKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
             G+  N           CK   L +A RL + M Q G+   + TYT L++G C V ++ 
Sbjct: 266 RLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIK 325

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK--------- 230
            A  LF  M   G +P++ SY+ LI+G+ K  N++ A+ +  EM   G K          
Sbjct: 326 EAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFI 385

Query: 231 --------------IFNEMKLCNVVPETF------------------------------- 245
                         + NEM+   +   TF                               
Sbjct: 386 WSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIE 445

Query: 246 ----TCNIFIDGLCKNGHVLEVMELFPTLEISN---CELFVEIFNSLIRGCCKFGIFEIA 298
               T  + IDGLCKN  V + ++ F    ISN    +    I+ ++I G CK    E A
Sbjct: 446 VTAVTFCVLIDGLCKNKLVSKAIDYFG--RISNDFGLQANAAIYTAMIDGLCKEDQVEAA 503

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           + LF +++ K LV D  AY  LI    K+G + +   L   M E G
Sbjct: 504 TTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIG 549



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 147/341 (43%), Gaps = 26/341 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F++L      E    +A Q   KM      P   +C+ L+    R G  +   +  ++M+
Sbjct: 66  FDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMI 125

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
                 G   KP VF Y  +ID +CK+  ++    LF EMK +G+  +T+          
Sbjct: 126 ------GAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYG 179

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K  +L +     E M      P + TY  L+N +C  GK+   +  F  M + G  P+V 
Sbjct: 180 KVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVV 239

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           SYS L++ +CK   +++A+            K + +M+   +VP   T    +D  CK G
Sbjct: 240 SYSTLVDAFCKEDMMQQAL------------KFYVDMRRLGLVPNEHTYTSLVDAYCKIG 287

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
           ++ +   L   +     E  V  + +LI G C     + A ELF K+    ++ ++ +Y 
Sbjct: 288 NLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYT 347

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            LIH   K   + +   LL  M+  G   D+  + T + S 
Sbjct: 348 ALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSL 388



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 165/365 (45%), Gaps = 27/365 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F S ++RC       + N L+  F   G      +  K M   G +P V T + +I
Sbjct: 82  ALQCF-SKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMI 140

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             + + G++     L +EM      F G+  P+   Y S+IDG  K   +D T   F EM
Sbjct: 141 DCMCKEGDIEAASGLFEEM-----KFRGLI-PDTVTYNSMIDGYGKVGRLDDTVYFFEEM 194

Query: 127 KDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K        I  NTL+   CK  KL +       M Q GL P + +Y+ L++ +C    +
Sbjct: 195 KSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMM 254

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A+  +  M R G +P+  +Y+ L++ YCK  N+ +A  ++ EM   G +         
Sbjct: 255 QQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVE--------W 306

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
           NVV  T+T    IDGLC    + E  ELF  +  +     +  + +LI G  K    + A
Sbjct: 307 NVV--TYTA--LIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRA 362

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            EL +++  + +  D++ Y   I +L    +I+    ++  M+E G   +   + TLM +
Sbjct: 363 LELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDA 422

Query: 359 FLQKE 363
           + + E
Sbjct: 423 YFKSE 427


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 168/363 (46%), Gaps = 26/363 (7%)

Query: 6   GALMAFGSFIRRCYRPLNDVTF-NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           GAL            PL  ++  N L++     G   D  +    +A+ G RP+    + 
Sbjct: 110 GALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNK 169

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
            +      G++   +     M+  MG  G    PN F Y  +I G+ +        ++F 
Sbjct: 170 AVQACVAAGDLGEAVG----MLRRMGRDGAP-PPNAFSYNVVIAGMWRAGRGGDAVEVFD 224

Query: 125 EMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           EM ++      I  NT++    K   L    RL + M+  GL P   TY  LL+G C  G
Sbjct: 225 EMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAG 284

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           ++    AL D MA +  +PD F+YS+L +G  +N + +  +++  + + NG         
Sbjct: 285 RMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNG--------- 335

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              V    +TC+I ++GLCK+G V    E+  +L  +       I+N+LI G C+ G  E
Sbjct: 336 ---VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 392

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A   F ++  +++  D + YN LI+ L K  +I     LL+ M++NG    V+TFNTL+
Sbjct: 393 GAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 452

Query: 357 ISF 359
            ++
Sbjct: 453 DAY 455



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 162/381 (42%), Gaps = 38/381 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F     R   P N +T+N++I G    G++    +L  +M   G +PN  T + L+
Sbjct: 219 AVEVFDEMTERAVLP-NHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLL 277

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +GL R G M  T  L  EM +          P+ F Y  L DGL ++        LF + 
Sbjct: 278 SGLCRAGRMGETSALLDEMASQK------MVPDGFTYSILFDGLSRNGDSKAMLSLFGKY 331

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G+             LCK  K+  A  +L+ ++  GL P    Y  L+NGYC  G++
Sbjct: 332 LKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL 391

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------- 230
             A + F  M  +   PD  +Y+ LING CK   +  A ++  EM  NG           
Sbjct: 392 EGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 451

Query: 231 ---------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                          + +EM+   + P   +    ++  CKNG + E + +   +   + 
Sbjct: 452 IDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDV 511

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
               +++N++I    + G  + A  L  K+    +   +V YN+LI  L  + QI +   
Sbjct: 512 LPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEE 571

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           ++ S+  +    D  ++NTL+
Sbjct: 572 IINSLSNHRLIPDAVSYNTLI 592



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 166/362 (45%), Gaps = 32/362 (8%)

Query: 14  FIRRCYR----PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
            +RR  R    P N  ++N +I G    G   DA ++  +M      PN  T +T+I G 
Sbjct: 186 MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 245

Query: 70  RRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
            + G++    +L  +MV +G+       KPN   Y  L+ GLC+   + +T  L  EM  
Sbjct: 246 IKGGDLEAGFRLRDQMVCHGL-------KPNAITYNVLLSGLCRAGRMGETSALLDEMAS 298

Query: 129 K-----GINANTLLCKKTKLVEANRLLELM---MQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +     G   + L    ++  ++  +L L    ++ G+    +T + LLNG C  GKV++
Sbjct: 299 QKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSI 358

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A  +  S+   G +P    Y+ LINGYC+   +E A +             F +MK  ++
Sbjct: 359 AEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFST------------FGQMKSRHI 406

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T N  I+GLCK   +    +L   ++ +     VE FN+LI    + G  E    
Sbjct: 407 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 466

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           + +++    L  +VV+Y  +++A  K G+I +   +L  M       +   +N ++ +++
Sbjct: 467 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 526

Query: 361 QK 362
           + 
Sbjct: 527 EH 528



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 161/359 (44%), Gaps = 39/359 (10%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           L  FG +++     + D T + L+ G C +G +  A ++++ +   G  P     +TLI 
Sbjct: 325 LSLFGKYLKNGVT-IGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLIN 383

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G  +TG +        +M +         KP+   Y +LI+GLCK   +   +DL MEM+
Sbjct: 384 GYCQTGELEGAFSTFGQMKSRH------IKPDHITYNALINGLCKAERITNAQDLLMEMQ 437

Query: 128 DKGINA-----NTLLCKKTKLVEANR---LLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
           D G+N      NTL+    +  +  +   +L  M + GL P + +Y  ++N +C  GK+ 
Sbjct: 438 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 497

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------- 228
            A+A+ D M  K  +P+   Y+ +I+ Y ++   ++A  +  +M  NG            
Sbjct: 498 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 557

Query: 229 ------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
                       ++I N +    ++P+  + N  I   C  G++ + ++L   +     +
Sbjct: 558 KGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIK 617

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG-QIKKEN 334
             V  ++ LI G    G       L+ K+   N+V     +NI++ A  K G +IK E+
Sbjct: 618 STVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAED 676



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 134/298 (44%), Gaps = 40/298 (13%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T ++ GA   FG    R  +P + +T+N+LI G C    I +A  L+ +M   G  P V 
Sbjct: 388 TGELEGAFSTFGQMKSRHIKP-DHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVE 446

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           T +TLI    RTG +     +  EM  NG+       KPNV  YGS+++  CK+  + + 
Sbjct: 447 TFNTLIDAYGRTGQLEKCFIVLSEMQENGL-------KPNVVSYGSIVNAFCKNGKIPEA 499

Query: 120 KDLFMEM--KDKGINANTLLCKKTKLVEANR------LLELMMQRGLNPVIFTYTPLLNG 171
             +  +M  KD   NA          VE         L+E M   G++P I TY  L+ G
Sbjct: 500 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 559

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK- 230
            C   +++ A  + +S++    +PD  SY+ LI+  C   N+++A+++ + M   G K  
Sbjct: 560 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 619

Query: 231 ----------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
                                 ++ +M   NVVP     NI ++   K G+ ++  +L
Sbjct: 620 VRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDL 677



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 16/211 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++ S++  FC  G I +A  ++  M      PN    + +I      G  +    L 
Sbjct: 479 NVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILV 538

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-----GINANTL 136
           ++M  NG+        P++  Y  LI GLC    + + +++   + +       ++ NTL
Sbjct: 539 EKMKSNGI-------SPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTL 591

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   C +  + +A  L + M + G+   + TY  L++G    G++N    L+  M +   
Sbjct: 592 ISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 651

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           +P    +++++  Y K  N  +A ++ +EM+
Sbjct: 652 VPSNAIHNIMVEAYSKYGNEIKAEDLRKEML 682


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 170/370 (45%), Gaps = 38/370 (10%)

Query: 9   MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           M F  +     RP N VT+ +L+ GFC    + +A +L+  M+  GC PN    D LI G
Sbjct: 584 MYFKQYDDNSERP-NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDG 642

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L + G ++      QE+   M + G  +   ++ Y SLID   K +  D    +  +M +
Sbjct: 643 LCKVGKLDEA----QEVKTEMSEHG--FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE 696

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
                N +        LCK  K  EA +L+++M ++G  P + TYT +++G+ ++GK+  
Sbjct: 697 NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIET 756

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILN 226
            + L + M  KG  P+  +Y VLI+  CKN  ++ A N+  EM              ++ 
Sbjct: 757 CLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIE 816

Query: 227 GFKKIF-------NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL-- 277
           GF K F       +E+   +  P      + ID L K   +   + L   +   +  L  
Sbjct: 817 GFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVD 876

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
           +   +NSLI   C     E A +LF++++ K ++ ++ ++  LI  L +  +I +   LL
Sbjct: 877 YSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 936

Query: 338 LSMEENGCAL 347
             +    C L
Sbjct: 937 DFISHMVCPL 946



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 162/362 (44%), Gaps = 42/362 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN +  +S  +  C  G    A  ++++M   G  P+ +T   ++  L     M L   L
Sbjct: 405 LNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLL 464

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM  G     G+   +V+ Y  ++D  CK  L++Q +  F EM++ G   N +     
Sbjct: 465 FEEMKRG-----GLV-ADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTAL 518

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  K+  AN L E M+  G  P I TY+ L++G+C  G+V  A  +F+ M     
Sbjct: 519 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKD 578

Query: 194 MPDV----------------FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +PDV                 +Y  L++G+CK+  VEEA            +K+ + M +
Sbjct: 579 VPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEA------------RKLLDAMSM 626

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
               P     +  IDGLCK G + E  E+   +        +  ++SLI    K    ++
Sbjct: 627 EGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDL 686

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           AS++ +K+   +   +VV Y  +I  L K G+  +   L+  MEE GC  +V T+  ++ 
Sbjct: 687 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 746

Query: 358 SF 359
            F
Sbjct: 747 GF 748



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 141/332 (42%), Gaps = 51/332 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI  +     +  A++L + M + GC PN+ T   LI G  + G +    ++ 
Sbjct: 511 NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF 570

Query: 83  QEMVNGMGDFGGI-----------YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
           + M  G  D   +            +PNV  YG+L+DG CK   V+              
Sbjct: 571 ERMC-GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVE-------------- 615

Query: 132 NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                        EA +LL+ M   G  P    Y  L++G C VGK++ A  +   M+  
Sbjct: 616 -------------EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEH 662

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           GF   +++YS LI+ Y K         V R+ + +   K+ ++M   +  P        I
Sbjct: 663 GFPATLYTYSSLIDRYFK---------VKRQDLAS---KVLSKMLENSCAPNVVIYTEMI 710

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           DGLCK G   E  +L   +E   C+  V  + ++I G    G  E   EL  ++  K + 
Sbjct: 711 DGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVA 770

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            + V Y +LI    K G +   + LL  M++ 
Sbjct: 771 PNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT 802



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 154/373 (41%), Gaps = 48/373 (12%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            N L++  C  G+   A + + ++  F  RP+ +T + LI    +   ++    +H+EM 
Sbjct: 162 LNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMS 221

Query: 87  NGMGDFGGI--------------------------YKPNVFCYGSLIDGLCKDRLVDQTK 120
                  G                           + P+   Y  LI GLC+  L ++  
Sbjct: 222 LANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAM 281

Query: 121 DLFMEMKDKG-----INANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           D    M+        +  +TLLC    K +L    R+L +MM  G  P    +  L++ Y
Sbjct: 282 DFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAY 341

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  G  + A  L   M + G MP    Y++LI   C +   ++++N     +L+  +K +
Sbjct: 342 CTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD---KDSLNFD---LLDLAEKAY 395

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLE----VMELFPTLEISNCELFVEIFNSLIRG 288
           +EM    VV      + F   LC  G   +    + E+     I +   + ++ N L   
Sbjct: 396 SEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYL--- 452

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C     E+A  LF ++    LVADV  Y I++ +  K G I++       M E GC  +
Sbjct: 453 -CNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPN 511

Query: 349 VDTFNTLMISFLQ 361
           V T+  L+ ++L+
Sbjct: 512 VVTYTALIHAYLK 524


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 157/339 (46%), Gaps = 45/339 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EG+IR A  +   +  +G RP+V + 
Sbjct: 102 KYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSF 161

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+++   +L     N M   G   +P+V+ Y  LI+GLCK+         
Sbjct: 162 NTLMNGYIRLGDLDEGFRLK----NAMHASG--VQPDVYTYSVLINGLCKE--------- 206

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 207 ------------------SKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAM 248

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ L  G CK  ++++A ++  EM + G K            P
Sbjct: 249 EIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLK------------P 296

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +   N  L   ++ +LI G C+ G    A ++ 
Sbjct: 297 DKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKML 356

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
            ++    L  +   Y ++I+   K+G +   + LL  M+
Sbjct: 357 REMLSVGLKPNXGTYTMIINEFCKKGDVWTGSKLLKEMQ 395



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 154/344 (44%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +          +  C  ++  L +     L    ++E++
Sbjct: 56  FSGLITXYLESGFLRDAIECYRLTREHKFWVPLDXCRKVLEHLMKLKYFKLVWGFYKEIL 115

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 116 ECG------YPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 169

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +   L E  RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  
Sbjct: 170 RLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGV 229

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N    GLCK G
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLTYGLCKKG 277

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  E A E   ++  +N+  D V Y 
Sbjct: 278 DLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYT 337

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   +  T+  ++  F +K
Sbjct: 338 ALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKK 381


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 163/365 (44%), Gaps = 26/365 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K +G +    S + +     N  T+  LI+ +     I +A +L  +M   G  P+V   
Sbjct: 237 KDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIY 296

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            ++I    + GNM     L  EM            PN + YG+LI+G CK   +   + +
Sbjct: 297 TSIINWNCKFGNMKRAFVLFDEMTERR------LVPNAYTYGALINGACKAGEMKAAEMM 350

Query: 123 FMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             +M+ KG++ N ++        CKK  + EA RL  +M Q+G     FT   + +G+C 
Sbjct: 351 VNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCR 410

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
             +   A  L  +M  +G  P+V S+S+LI+ YCK  N  EA            +++F  
Sbjct: 411 SNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEA------------RRLFKV 458

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+     P   T N FI+  CK G + E  +L   ++          + SLI G    G 
Sbjct: 459 MEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGN 518

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A ELFN++    L  +VV Y ++I  L K+G+  +   L   M + G   D   +++
Sbjct: 519 VDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSS 578

Query: 355 LMISF 359
           L+ S 
Sbjct: 579 LIASL 583



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 166/344 (48%), Gaps = 34/344 (9%)

Query: 29  SLIKGFC-------MEGNIRDASQLVKKMA-TFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           S+++ FC       M+  + D+S  V   A   G   +  +C   +  L+R+GNM L ++
Sbjct: 115 SIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVE 174

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
             ++MV+      GI +  V  + +++DGLCK   V + K L  E+  KG     I  NT
Sbjct: 175 FLRQMVDS-----GI-EIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNT 228

Query: 136 LLCKKTKLVEA---NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           LL    ++ +    N +L LM +  ++  + TYT L+  Y    K+  A  LFD M +KG
Sbjct: 229 LLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKG 288

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PDV+ Y+ +IN  CK  N++ A              +F+EM    +VP  +T    I+
Sbjct: 289 IEPDVYIYTSIINWNCKFGNMKRAF------------VLFDEMTERRLVPNAYTYGALIN 336

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CK G +     +   ++    ++   IFN+L+ G CK G+ + A  L N +  K    
Sbjct: 337 GACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEI 396

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D    NI+     +  + ++   LLL+MEE G A +V +F+ L+
Sbjct: 397 DAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILI 440



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 164/372 (44%), Gaps = 44/372 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG---LRRTGNMNLTLKLH 82
           ++ +++ G C +G +  A  L+ ++   G +P+V T +TL+ G   ++  G +N  L L 
Sbjct: 190 SWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLM 249

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
           ++          +   NV  Y  LI+   +   +++ + LF EM  KGI  +  +     
Sbjct: 250 EK---------NVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSII 300

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   +  A  L + M +R L P  +TY  L+NG C  G++  A  + + M  KG  
Sbjct: 301 NWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVD 360

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
            +   ++ L++GYCK   ++EA+ +   M   GF                       K++
Sbjct: 361 VNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRL 420

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
              M+   V P   + +I ID  CK  +  E   LF  +E       V  +N+ I   CK
Sbjct: 421 LLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCK 480

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A +L N++  + L+ D   Y  LI      G + +   L   M + G   +V T
Sbjct: 481 KGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVT 540

Query: 352 FNTLMISFLQKE 363
           + T++IS L K+
Sbjct: 541 Y-TVIISGLSKD 551



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 159/351 (45%), Gaps = 39/351 (11%)

Query: 38  GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIY 96
           GN+    + +++M   G    V +   ++ GL + G +     L  E+V  G       +
Sbjct: 167 GNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKG-------F 219

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTLL----CKKTKLVEANR 148
           KP+V  Y +L++G  + + V    ++   M+    D  +   T+L     + +K+ EA +
Sbjct: 220 KPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEK 279

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L + M+++G+ P ++ YT ++N  C  G +  A  LFD M  +  +P+ ++Y  LING C
Sbjct: 280 LFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGAC 339

Query: 209 KNFNVEEAMNVSREMILNGF---KKIFN--------------EMKLCNVVPE------TF 245
           K   ++ A  +  +M   G    + IFN               ++L N++ +       F
Sbjct: 340 KAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAF 399

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           TCNI   G C++    E   L  T+E       V  F+ LI   CK   F  A  LF  +
Sbjct: 400 TCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVM 459

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             K     VV YN  I    K+G++++   L+  M+E G   D  T+ +L+
Sbjct: 460 EKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLI 510



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 133/295 (45%), Gaps = 27/295 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A + F     R   P N  T+ +LI G C  G ++ A  +V  M + G   N    +TL+
Sbjct: 312 AFVLFDEMTERRLVP-NAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLM 370

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G ++  L+L     N M   G  ++ + F    +  G C+    ++ K L + M
Sbjct: 371 DGYCKKGMIDEALRLQ----NIMQQKG--FEIDAFTCNIIASGFCRSNRREEAKRLLLTM 424

Query: 127 KDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           +++G+  N         + CK+    EA RL ++M ++G  P + TY   +  YC  GK+
Sbjct: 425 EERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKM 484

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A  L + M  +G MPD ++Y+ LI+G   + NV+ A+            ++FNEM   
Sbjct: 485 EEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRAL------------ELFNEMPQL 532

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            +     T  + I GL K+G   E  +L+  +          I++SLI    K G
Sbjct: 533 GLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVG 587


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 163/365 (44%), Gaps = 26/365 (7%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K +G +    S + +     N  T+  LI+ +     I +A +L  +M   G  P+V   
Sbjct: 241 KDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIY 300

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            ++I    + GNM     L  EM            PN + YG+LI+G CK   +   + +
Sbjct: 301 TSIINWNCKFGNMKRAFVLFDEMTERR------LVPNAYTYGALINGACKAGEMKAAEMM 354

Query: 123 FMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             +M+ KG++ N ++        CKK  + EA RL  +M Q+G     FT   + +G+C 
Sbjct: 355 VNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCR 414

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
             +   A  L  +M  +G  P+V S+S+LI+ YCK  N  EA            +++F  
Sbjct: 415 SNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEA------------RRLFKV 462

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+     P   T N FI+  CK G + E  +L   ++          + SLI G    G 
Sbjct: 463 MEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGN 522

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A ELFN++    L  +VV Y ++I  L K+G+  +   L   M + G   D   +++
Sbjct: 523 VDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSS 582

Query: 355 LMISF 359
           L+ S 
Sbjct: 583 LIASL 587



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 166/344 (48%), Gaps = 34/344 (9%)

Query: 29  SLIKGFC-------MEGNIRDASQLVKKMA-TFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           S+++ FC       M+  + D+S  V   A   G   +  +C   +  L+R+GNM L ++
Sbjct: 119 SIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVE 178

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
             ++MV+      GI +  V  + +++DGLCK   V + K L  E+  KG     I  NT
Sbjct: 179 FLRQMVDS-----GI-EIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNT 232

Query: 136 LLCKKTKLVEA---NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           LL    ++ +    N +L LM +  ++  + TYT L+  Y    K+  A  LFD M +KG
Sbjct: 233 LLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKG 292

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PDV+ Y+ +IN  CK  N++ A              +F+EM    +VP  +T    I+
Sbjct: 293 IEPDVYIYTSIINWNCKFGNMKRAF------------VLFDEMTERRLVPNAYTYGALIN 340

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G CK G +     +   ++    ++   IFN+L+ G CK G+ + A  L N +  K    
Sbjct: 341 GACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEI 400

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           D    NI+     +  + ++   LLL+MEE G A +V +F+ L+
Sbjct: 401 DAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILI 444



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 164/372 (44%), Gaps = 44/372 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG---LRRTGNMNLTLKLH 82
           ++ +++ G C +G +  A  L+ ++   G +P+V T +TL+ G   ++  G +N  L L 
Sbjct: 194 SWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLM 253

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
           ++          +   NV  Y  LI+   +   +++ + LF EM  KGI  +  +     
Sbjct: 254 EK---------NVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSII 304

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   +  A  L + M +R L P  +TY  L+NG C  G++  A  + + M  KG  
Sbjct: 305 NWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVD 364

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKI 231
            +   ++ L++GYCK   ++EA+ +   M   GF                       K++
Sbjct: 365 VNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRL 424

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
              M+   V P   + +I ID  CK  +  E   LF  +E       V  +N+ I   CK
Sbjct: 425 LLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCK 484

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G  E A +L N++  + L+ D   Y  LI      G + +   L   M + G   +V T
Sbjct: 485 KGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVT 544

Query: 352 FNTLMISFLQKE 363
           + T++IS L K+
Sbjct: 545 Y-TVIISGLSKD 555



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 159/351 (45%), Gaps = 39/351 (11%)

Query: 38  GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIY 96
           GN+    + +++M   G    V +   ++ GL + G +     L  E+V  G       +
Sbjct: 171 GNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKG-------F 223

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTLL----CKKTKLVEANR 148
           KP+V  Y +L++G  + + V    ++   M+    D  +   T+L     + +K+ EA +
Sbjct: 224 KPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEK 283

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L + M+++G+ P ++ YT ++N  C  G +  A  LFD M  +  +P+ ++Y  LING C
Sbjct: 284 LFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGAC 343

Query: 209 KNFNVEEAMNVSREMILNGF---KKIFN--------------EMKLCNVVPE------TF 245
           K   ++ A  +  +M   G    + IFN               ++L N++ +       F
Sbjct: 344 KAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAF 403

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           TCNI   G C++    E   L  T+E       V  F+ LI   CK   F  A  LF  +
Sbjct: 404 TCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVM 463

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             K     VV YN  I    K+G++++   L+  M+E G   D  T+ +L+
Sbjct: 464 EKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLI 514



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 133/295 (45%), Gaps = 27/295 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A + F     R   P N  T+ +LI G C  G ++ A  +V  M + G   N    +TL+
Sbjct: 316 AFVLFDEMTERRLVP-NAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLM 374

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G  + G ++  L+L     N M   G  ++ + F    +  G C+    ++ K L + M
Sbjct: 375 DGYCKKGMIDEALRLQ----NIMQQKG--FEIDAFTCNIIASGFCRSNRREEAKRLLLTM 428

Query: 127 KDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           +++G+  N         + CK+    EA RL ++M ++G  P + TY   +  YC  GK+
Sbjct: 429 EERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKM 488

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
             A  L + M  +G MPD ++Y+ LI+G   + NV+ A+            ++FNEM   
Sbjct: 489 EEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRAL------------ELFNEMPQL 536

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            +     T  + I GL K+G   E  +L+  +          I++SLI    K G
Sbjct: 537 GLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVG 591


>gi|297726211|ref|NP_001175469.1| Os08g0248500 [Oryza sativa Japonica Group]
 gi|255678284|dbj|BAH94197.1| Os08g0248500 [Oryza sativa Japonica Group]
          Length = 1487

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 23/224 (10%)

Query: 162  IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
            + TY+ L++GYCL GK++ A+ L   M   G  PD  +YS LINGYCK   +E A+++ R
Sbjct: 1207 VITYSTLIDGYCLAGKMDEAMKLLSDMVSVGLKPDTVTYSTLINGYCKISRMENALSLFR 1266

Query: 222  EMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            +M+ NG                        K+I+  +    +  E  TCNI + GLCKN 
Sbjct: 1267 QMVCNGVSPNIITYNIVLQGLFQTGQTRAAKEIYVRIIKRGIQLEISTCNIVLQGLCKNN 1326

Query: 259  HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
               E +++F  L + + +L    FN +I    + G  + + +LF  LS   L  DVV Y 
Sbjct: 1327 LTGEALQMFQNLCLMDVKLETRTFNIMIGSLLRSGRKDESKDLFAALSANGLAPDVVTYT 1386

Query: 319  ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            ++I  L ++G +++ + L LSME+NGC  +    N ++   LQK
Sbjct: 1387 LMIENLIEDGLLEESDNLFLSMEKNGCVPNSRMLNCIVRKLLQK 1430



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 113/245 (46%), Gaps = 28/245 (11%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            +T+++LI G+C+ G + +A +L+  M + G +P+  T  TLI G  +   M   L L ++
Sbjct: 1208 ITYSTLIDGYCLAGKMDEAMKLLSDMVSVGLKPDTVTYSTLINGYCKISRMENALSLFRQ 1267

Query: 85   MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN-----ANTL-- 136
            MV NG+        PN+  Y  ++ GL +       K++++ +  +GI       N +  
Sbjct: 1268 MVCNGV-------SPNIITYNIVLQGLFQTGQTRAAKEIYVRIIKRGIQLEISTCNIVLQ 1320

Query: 137  -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             LCK     EA ++ + +    +     T+  ++      G+ + +  LF +++  G  P
Sbjct: 1321 GLCKNNLTGEALQMFQNLCLMDVKLETRTFNIMIGSLLRSGRKDESKDLFAALSANGLAP 1380

Query: 196  DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
            DV +Y+++I    ++  +EE+ N+   M  NG             VP +   N  +  L 
Sbjct: 1381 DVVTYTLMIENLIEDGLLEESDNLFLSMEKNG------------CVPNSRMLNCIVRKLL 1428

Query: 256  KNGHV 260
            + G +
Sbjct: 1429 QKGEI 1433



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 32/179 (17%)

Query: 2    SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
            S++  AL  F   +     P N +T+N +++G    G  R A ++  ++   G +  ++T
Sbjct: 1256 SRMENALSLFRQMVCNGVSP-NIITYNIVLQGLFQTGQTRAAKEIYVRIIKRGIQLEIST 1314

Query: 62   CDTLITGLRRTGNMNLTLKLHQEMV--------------------NGMGD-----FGGI- 95
            C+ ++ GL +       L++ Q +                     +G  D     F  + 
Sbjct: 1315 CNIVLQGLCKNNLTGEALQMFQNLCLMDVKLETRTFNIMIGSLLRSGRKDESKDLFAALS 1374

Query: 96   ---YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTLLCKKTKLVEANRL 149
                 P+V  Y  +I+ L +D L++++ +LF+ M+  G   N+  L C   KL++   +
Sbjct: 1375 ANGLAPDVVTYTLMIENLIEDGLLEESDNLFLSMEKNGCVPNSRMLNCIVRKLLQKGEI 1433


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 151/344 (43%), Gaps = 27/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+LI   C      +A  L  +M   G RPN  T   LI    R G ++  L    EMV
Sbjct: 370 YNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMV 429

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
               D G   K +V+ Y SLI+G CK   +   +    EM +K +    +         C
Sbjct: 430 ----DTG--LKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYC 483

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
            K K+ +A RL   M  +G+ P I+T+T LL+G    G +  A+ LF+ MA     P+  
Sbjct: 484 SKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRV 543

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +Y+V+I GYC+  ++ +A    +EM   G            +VP+T++    I GLC  G
Sbjct: 544 TYNVMIEGYCEEGDMSKAFEFLKEMTEKG------------IVPDTYSYRPLIHGLCLTG 591

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
              E       L   NCEL    +  L+ G C+ G  E A  +  ++  + +  D+V Y 
Sbjct: 592 QASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYG 651

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +LI    K    K    LL  M + G   D D   T MI    K
Sbjct: 652 VLIDGSLKHKDRKLFFGLLKEMHDRGLKPD-DVIYTSMIDAKSK 694



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 164/378 (43%), Gaps = 49/378 (12%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V +N LI G C +  + +A  + K +A    +P+V T  TL+ GL +     + L++
Sbjct: 260 VNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEM 319

Query: 82  HQEM---------------VNGMGDFGGIYK--------------PNVFCYGSLIDGLCK 112
             EM               V G+   G I +              PN+F Y +LID LCK
Sbjct: 320 MDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCK 379

Query: 113 DRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFT 164
            R   + + LF  M   G+  N         + C++ KL  A   L  M+  GL   ++ 
Sbjct: 380 GRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYP 439

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  L+NG+C  G ++ A      M  K   P V +Y+ L+ GYC    + +A+       
Sbjct: 440 YNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKAL------- 492

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
                ++++EM    + P  +T    + GL + G + + ++LF  +   N +     +N 
Sbjct: 493 -----RLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNV 547

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           +I G C+ G    A E   +++ K +V D  +Y  LIH L   GQ  +    +  + +  
Sbjct: 548 MIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGN 607

Query: 345 CALDVDTFNTLMISFLQK 362
           C L+   +  L+  F ++
Sbjct: 608 CELNEICYTGLLHGFCRE 625



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 164/348 (47%), Gaps = 38/348 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I+G+C EG++  A + +K+M   G  P+  +   LI GL  TG  +      
Sbjct: 541 NRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA---- 596

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT- 141
           +  V+G+    G  + N  CY  L+ G C++  +++   +  EM  +G++ + L+C    
Sbjct: 597 KVFVDGL--HKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLD-LVCYGVL 653

Query: 142 ---KLVEANR-----LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               L   +R     LL+ M  RGL P    YT +++     G    A  ++D M  +G 
Sbjct: 654 IDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGC 713

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P+  +Y+ +ING CK   V EA            + + ++M+  + VP   T   F+D 
Sbjct: 714 VPNEVTYTAVINGLCKAGFVNEA------------EVLCSKMQPVSSVPNQVTYGCFLDI 761

Query: 254 LCKNGHVLEVMELFPTLEISNCELF-----VEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
           L K G V    ++   +E+ N  L         +N LIRG C+ G  E ASEL  ++   
Sbjct: 762 LTK-GEV----DMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGD 816

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +  D + Y  +I+ L +   +KK   L  SM E G   D   +NTL+
Sbjct: 817 GVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLI 864



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 157/362 (43%), Gaps = 38/362 (10%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMAT-FGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           F+ LI+ +     + D   + K M T     P V T   L+ GL +  +  L ++L  +M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           V+      GI +P+V+ Y  +I  LC+ + + + K++   M+  G + N +        L
Sbjct: 219 VSV-----GI-RPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGL 272

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CKK K+ EA  + + +  + L P + TY  L+ G C V +  + + + D M    F P  
Sbjct: 273 CKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSE 332

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNE 234
            + S L+ G  K   +EEA+N+ + ++  G                          +F+ 
Sbjct: 333 AAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDR 392

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M    + P   T +I ID  C+ G +   +     +  +  +L V  +NSLI G CKFG 
Sbjct: 393 MGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGD 452

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A     ++  K L   VV Y  L+     +G+I K   L   M   G A  + TF T
Sbjct: 453 ISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTT 512

Query: 355 LM 356
           L+
Sbjct: 513 LL 514



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 172/386 (44%), Gaps = 48/386 (12%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           A+  F   +    RP  DV  +  +I+  C   ++  A +++  M   GC  N+   + L
Sbjct: 211 AMELFNDMVSVGIRP--DVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVL 268

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I GL +   +   + + +++       G   KP+V  Y +L+ GLCK     Q  ++ +E
Sbjct: 269 IDGLCKKQKVWEAVGIKKDLA------GKDLKPDVVTYCTLVYGLCKV----QEFEIGLE 318

Query: 126 MKDKGI---------NANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           M D+ +           ++L   L K+ K+ EA  L++ ++  G++P +F Y  L++  C
Sbjct: 319 MMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLC 378

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-KIF 232
              K + A  LFD M + G  P+  +YS+LI+ +C+   ++ A++   EM+  G K  ++
Sbjct: 379 KGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVY 438

Query: 233 NEMKLCN----------------------VVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
               L N                      + P   T    + G C  G + + + L+  +
Sbjct: 439 PYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEM 498

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
                   +  F +L+ G  + G+   A +LFN+++  N+  + V YN++I    +EG +
Sbjct: 499 TGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDM 558

Query: 331 KKENYLLLSMEENGCALDVDTFNTLM 356
            K    L  M E G   D  ++  L+
Sbjct: 559 SKAFEFLKEMTEKGIVPDTYSYRPLI 584



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 15/220 (6%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R  +P +DV + S+I      G+ ++A  +   M   GC PN  T   +I GL + G +N
Sbjct: 676 RGLKP-DDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN 734

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
                 + + + M     +  PN   YG  +D L K  +  Q          KG+ ANT 
Sbjct: 735 EA----EVLCSKMQPVSSV--PNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTA 788

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                    C++ ++ EA+ L+  M+  G++P   TYT ++N  C    V  AI L++SM
Sbjct: 789 TYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSM 848

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
             KG  PD  +Y+ LI+G C    + +A  +  EM+  G 
Sbjct: 849 TEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGL 888



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 16/183 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG-NMNLTLKL 81
           N+VT+ ++I G C  G + +A  L  KM      PN  T    +  L +   +M   ++L
Sbjct: 716 NEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVEL 775

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           H  ++ G+         N   Y  LI G C+   +++  +L   M   G++ + +     
Sbjct: 776 HNAILKGL-------LANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTM 828

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++  + +A  L   M ++G+ P    Y  L++G C+ G++  A  L + M R+G 
Sbjct: 829 INELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGL 888

Query: 194 MPD 196
           +P+
Sbjct: 889 IPN 891



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 12/208 (5%)

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
           ++ +  L P + T + LL+G        +A+ LF+ M   G  PDV+ Y+ +I   C+  
Sbjct: 182 MITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELK 241

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
           ++  A  +   M   G           N+VP     N+ IDGLCK   V E + +   L 
Sbjct: 242 DLSRAKEMIAHMEATGCD--------VNIVPY----NVLIDGLCKKQKVWEAVGIKKDLA 289

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
             + +  V  + +L+ G CK   FEI  E+ +++ C        A + L+  L K G+I+
Sbjct: 290 GKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIE 349

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
           +   L+  + + G + ++  +N L+ S 
Sbjct: 350 EALNLVKRVVDFGVSPNLFVYNALIDSL 377


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 155/343 (45%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+NSLI G+C  GN+++A  L   +   G  P+V T + L+ G  R G++    +  QE
Sbjct: 373 ITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQE 432

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCK 139
           MV          +P+V  Y  L++G  K R +   ++ F EM  KG+       NT +  
Sbjct: 433 MVEQGC------QPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISA 486

Query: 140 KTKL---VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +  L    EA +L E+M+ RG++    TY   L+G C  G +  A  L+  M   G  PD
Sbjct: 487 ELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPD 546

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+ +C+   + EA            + IF+ M +  + P   T  +FI   C+
Sbjct: 547 CITYTCLIHAHCERGRLREA------------RDIFDGMLVSGLPPSAVTYTVFIHAYCR 594

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G++      F  +           +N LI   C+ G   +A + F+++  + L  +   
Sbjct: 595 RGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYT 654

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y +LI    KEG  ++   L   M ++G   D  T N L   F
Sbjct: 655 YTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGF 697



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 175/400 (43%), Gaps = 75/400 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATF--GCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           VT+N+L+  F  EG +  A++L+++M     GC P+  T + +I GL R G +    +L 
Sbjct: 232 VTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLV 291

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLL 137
             M           K + F +  LI G      V++   L +EM+++GI       NT++
Sbjct: 292 DRMRMSK-------KASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTII 344

Query: 138 CK--KTKLVEANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               ++  VEA R+  + M+  GL P + TY  L+NGYC  G +  A+ LF  + R G  
Sbjct: 345 HGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLA 404

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGFKKI--------- 231
           P V +Y++L++GYC+  ++EEA    +EM+              +NG +K+         
Sbjct: 405 PSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREF 464

Query: 232 FNEMKLCNVVP-----------------------------------ETFTCNIFIDGLCK 256
           F+EM    + P                                   +T T NIF+DGLCK
Sbjct: 465 FDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCK 524

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           +G++ +   L+  +     +     +  LI   C+ G    A ++F+ +    L    V 
Sbjct: 525 SGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVT 584

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y + IHA  + G +         M E G   +  T+N L+
Sbjct: 585 YTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLI 624



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 157/374 (41%), Gaps = 61/374 (16%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI G+   G++  A  L  +M   G  P V T +T+I G+ R+GN+        EM
Sbjct: 304 TFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEM 363

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
              MG       P++  Y SLI+G CK   + +   LF ++K  G+  + L         
Sbjct: 364 -RAMGLL-----PDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGY 417

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+   L EA R  + M+++G  P + TYT L+NG   V  + +    FD M  KG  PD 
Sbjct: 418 CRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDC 477

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           F+Y+  I+      +  EA  ++  MI  G               +T T NIF+DGLCK+
Sbjct: 478 FAYNTRISAELILGSTSEAFQLTEVMISRGISS------------DTVTYNIFLDGLCKS 525

Query: 258 G-----HVL------------------------------EVMELFPTLEISNCELFVEIF 282
           G     +VL                              E  ++F  + +S        +
Sbjct: 526 GNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTY 585

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
              I   C+ G    A   F K+  + +  + V YN+LIHAL + G+          M E
Sbjct: 586 TVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLE 645

Query: 343 NGCALDVDTFNTLM 356
            G + +  T+  L+
Sbjct: 646 RGLSPNKYTYTLLI 659



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 117/251 (46%), Gaps = 30/251 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            +N+ I    + G+  +A QL + M + G   +  T +  + GL ++GN+     L  +M
Sbjct: 479 AYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKM 538

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           V +G+       +P+   Y  LI   C+   + + +D+F  M   G+  + +        
Sbjct: 539 VSDGL-------QPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHA 591

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C++  L  A    + M++ G+ P   TY  L++  C +G+ N+A   F  M  +G  P+
Sbjct: 592 YCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPN 651

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL-- 254
            ++Y++LI+G CK  N EEA+            ++++EM    + P+  T N    G   
Sbjct: 652 KYTYTLLIDGNCKEGNWEEAI------------RLYSEMHQHGIHPDHCTHNALFKGFDE 699

Query: 255 CKNGHVLEVME 265
            ++ H ++ ME
Sbjct: 700 GQSKHAIQYME 710



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+   I  +C  GN+  A    +KM   G RPN  T + LI  L R G  NL  +
Sbjct: 579 PPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQ 638

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
              EM+  G+        PN + Y  LIDG CK+   ++   L+ EM   GI+ +
Sbjct: 639 HFHEMLERGL-------SPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPD 686


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 159/343 (46%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N +I  FC  G +  A ++ +++    C P V T   LI      G +++ +KL  E
Sbjct: 174 VTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDE 233

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M++      G+ +P+   Y ++I G+CK+ +VD+  +L   +  +G   + +        
Sbjct: 234 MLS-----KGL-EPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRT 287

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L  + K  E  +L+  M+  G  P + T++ L+   C  GKV  A+ L  SM  KG  PD
Sbjct: 288 LLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPD 347

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            + Y  LI G+C+   ++ A      MI +G             +P+    N  + GLC+
Sbjct: 348 AYCYDPLIAGFCREGRLDLATEFLEYMISDG------------CLPDIVNYNTIMAGLCR 395

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G   + +E+F  L+   C   V  +N+L       G    A E+  KL  + +  D + 
Sbjct: 396 TGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEIT 455

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           YN LI  L ++G + +   LL+ M+      +V ++N +++  
Sbjct: 456 YNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGL 498



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 153/339 (45%), Gaps = 46/339 (13%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           +V    L+   C  G   ++   ++ M   G  P+V  C  LI G   + N+    ++  
Sbjct: 69  EVHLMKLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRV-M 127

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143
           E++   G      KP+VF Y +LI G                     I AN       +L
Sbjct: 128 EILERYG------KPDVFAYNALISGF--------------------IKAN-------QL 154

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
             ANR+L+ M  RG  P + TY  ++  +C  GK+++A+ +F+ + +    P V +Y++L
Sbjct: 155 ENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTIL 214

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I     +  ++ AM +  EM+  G +            P+T T N  I G+CK   V + 
Sbjct: 215 IEATILDGGIDVAMKLLDEMLSKGLE------------PDTLTYNAIIRGMCKEMMVDKA 262

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
            EL  +L    C+  +  +N L+R     G +    +L +++       +VV ++ILI  
Sbjct: 263 FELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGT 322

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           L ++G++++   LL SM+E G   D   ++ L+  F ++
Sbjct: 323 LCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCRE 361



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +++T+NSLI   C +G + +A +L+  M +   RPNV + + ++ GL +    N  +   
Sbjct: 452 DEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAI--- 508

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGL 110
            E++  M + G   +PN   Y  LI+G+
Sbjct: 509 -EVLAAMTEKG--CQPNETTYILLIEGI 533



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR----RTGN 74
           YRP N V++N ++ G C      DA +++  M   GC+PN TT   LI G+     R   
Sbjct: 484 YRP-NVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEA 542

Query: 75  MNLTLKLH 82
           M L   LH
Sbjct: 543 MELANSLH 550


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 170/370 (45%), Gaps = 38/370 (10%)

Query: 9   MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           M F  +     RP N VT+ +L+ GFC    + +A +L+  M+  GC PN    D LI G
Sbjct: 625 MYFKQYDDNSERP-NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDG 683

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L + G ++      QE+   M + G  +   ++ Y SLID   K +  D    +  +M +
Sbjct: 684 LCKVGKLDEA----QEVKTEMSEHG--FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE 737

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
                N +        LCK  K  EA +L+++M ++G  P + TYT +++G+ ++GK+  
Sbjct: 738 NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIET 797

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILN 226
            + L + M  KG  P+  +Y VLI+  CKN  ++ A N+  EM              ++ 
Sbjct: 798 CLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIE 857

Query: 227 GFKKIF-------NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL-- 277
           GF K F       +E+   +  P      + ID L K   +   + L   +   +  L  
Sbjct: 858 GFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVD 917

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
           +   +NSLI   C     E A +LF++++ K ++ ++ ++  LI  L +  +I +   LL
Sbjct: 918 YSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 977

Query: 338 LSMEENGCAL 347
             +    C L
Sbjct: 978 DFISHMVCPL 987



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 162/362 (44%), Gaps = 42/362 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN +  +S  +  C  G    A  ++++M   G  P+ +T   ++  L     M L   L
Sbjct: 446 LNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLL 505

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM  G     G+   +V+ Y  ++D  CK  L++Q +  F EM++ G   N +     
Sbjct: 506 FEEMKRG-----GLV-ADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTAL 559

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  K+  AN L E M+  G  P I TY+ L++G+C  G+V  A  +F+ M     
Sbjct: 560 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKD 619

Query: 194 MPDV----------------FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +PDV                 +Y  L++G+CK+  VEEA            +K+ + M +
Sbjct: 620 VPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEA------------RKLLDAMSM 667

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
               P     +  IDGLCK G + E  E+   +        +  ++SLI    K    ++
Sbjct: 668 EGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDL 727

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           AS++ +K+   +   +VV Y  +I  L K G+  +   L+  MEE GC  +V T+  ++ 
Sbjct: 728 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787

Query: 358 SF 359
            F
Sbjct: 788 GF 789



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 141/332 (42%), Gaps = 51/332 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI  +     +  A++L + M + GC PN+ T   LI G  + G +    ++ 
Sbjct: 552 NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF 611

Query: 83  QEMVNGMGDFGGI-----------YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
           + M  G  D   +            +PNV  YG+L+DG CK   V+              
Sbjct: 612 ERMC-GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVE-------------- 656

Query: 132 NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                        EA +LL+ M   G  P    Y  L++G C VGK++ A  +   M+  
Sbjct: 657 -------------EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEH 703

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           GF   +++YS LI+ Y K         V R+ + +   K+ ++M   +  P        I
Sbjct: 704 GFPATLYTYSSLIDRYFK---------VKRQDLAS---KVLSKMLENSCAPNVVIYTEMI 751

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           DGLCK G   E  +L   +E   C+  V  + ++I G    G  E   EL  ++  K + 
Sbjct: 752 DGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVA 811

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            + V Y +LI    K G +   + LL  M++ 
Sbjct: 812 PNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT 843



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 154/373 (41%), Gaps = 48/373 (12%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            N L++  C  G+   A + + ++  F  RP+ +T + LI    +   ++    +H+EM 
Sbjct: 203 LNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMS 262

Query: 87  NGMGDFGGI--------------------------YKPNVFCYGSLIDGLCKDRLVDQTK 120
                  G                           + P+   Y  LI GLC+  L ++  
Sbjct: 263 LANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAM 322

Query: 121 DLFMEMKDKG-----INANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           D    M+        +  +TLLC    K +L    R+L +MM  G  P    +  L++ Y
Sbjct: 323 DFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAY 382

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  G  + A  L   M + G MP    Y++LI   C +   ++++N     +L+  +K +
Sbjct: 383 CTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD---KDSLNCD---LLDLAEKAY 436

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLE----VMELFPTLEISNCELFVEIFNSLIRG 288
           +EM    VV      + F   LC  G   +    + E+     I +   + ++ N L   
Sbjct: 437 SEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYL--- 493

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C     E+A  LF ++    LVADV  Y I++ +  K G I++       M E GC  +
Sbjct: 494 -CNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPN 552

Query: 349 VDTFNTLMISFLQ 361
           V T+  L+ ++L+
Sbjct: 553 VVTYTALIHAYLK 565


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 157/342 (45%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + SLI+ F M G   D  ++ K+M   GC+P++T  +T +  + + G++     + 
Sbjct: 495 NPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIF 554

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++ + G G     + P+V  Y  LI GL K     +T  +F  MK +G   +        
Sbjct: 555 ED-IKGYG-----FLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVV 608

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  KL +A  +LE M  + + P + TY  +++G   + +++ A  LF+    KG  
Sbjct: 609 DGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIE 668

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +V  YS LI+G+ K   ++EA  +  EM+  G            + P  +T N  +D L
Sbjct: 669 LNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKG------------LTPNVYTWNSLMDAL 716

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K   + E +  F +++   C      ++ LI G C+   +  A   + ++  + LV +V
Sbjct: 717 VKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNV 776

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V Y  +I  L K G I     L    + NG   D  +FN L+
Sbjct: 777 VTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALI 818



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 158/355 (44%), Gaps = 38/355 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N +I   CM G + +A  +  +M   G  PN+ T + ++  L +           
Sbjct: 390 NSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAY--- 446

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            EM       G    PN   Y SLIDGL K   VD    LF  M D G NAN ++   T 
Sbjct: 447 -EMFETASQRGC--NPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVY--TS 501

Query: 143 LV----------EANRLLELMMQRGLNPVIFTYTPLLNGY--CL--VGKVNVAIALFDSM 188
           L+          + +++ + M +RG  P +     LLN Y  C+   G V    A+F+ +
Sbjct: 502 LIRNFFMHGRKEDGHKIFKEMNRRGCQPDL----TLLNTYMDCVFKAGDVEKGRAIFEDI 557

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
              GF+PDV SYS+LI+G  K     E               IF+ MK      +    N
Sbjct: 558 KGYGFLPDVRSYSILIHGLTKAGQARET------------SSIFHAMKQQGFALDARAYN 605

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             +DG CK+G + +  E+   +++      V  + S+I G  K    + A  LF +   K
Sbjct: 606 AVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSK 665

Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            +  +V+ Y+ LI   GK G+I +   +L  M + G   +V T+N+LM + ++ E
Sbjct: 666 GIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAE 720



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 139/314 (44%), Gaps = 27/314 (8%)

Query: 22  LNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           L DV +++ LI G    G  R+ S +   M   G   +    + ++ G  ++G ++   +
Sbjct: 563 LPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYE 622

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-- 138
           + +EM            P V  YGS+IDGL K   +D+   LF E K KGI  N ++   
Sbjct: 623 VLEEMKVKR------VPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSS 676

Query: 139 ------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K  ++ EA  +LE MM++GL P ++T+  L++      ++N A+  F SM    
Sbjct: 677 LIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMK 736

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+ ++YS+LING C+     +A    +EM   G            +VP   T    I 
Sbjct: 737 CSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQG------------LVPNVVTYTTMIA 784

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GL K G++ +   LF   + +        FN+LI G         A  +F +   K    
Sbjct: 785 GLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRI 844

Query: 313 DVVAYNILIHALGK 326
           +V A   L+ AL K
Sbjct: 845 NVKACISLLDALNK 858



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 146/339 (43%), Gaps = 29/339 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM- 85
           F +L++    EG +  A  LV ++      P++   +  I    + GN+++  K   E+ 
Sbjct: 220 FTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELK 279

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-----GINANTLLC-- 138
             G+       KP+   Y S+I  LCK   + + ++LF +M+ +         NT++   
Sbjct: 280 SQGL-------KPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGY 332

Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
               +   A +LL+ + +RG  P + ++  +L       KV+ A+ LF++M +K   P+ 
Sbjct: 333 GSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAM-KKDAEPNS 391

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+++I+  C    VEEA              I +EM+   + P   T NI +D LCK 
Sbjct: 392 STYNIIIDMLCMAGKVEEAY------------MIRDEMEHAGLFPNLLTVNIMVDRLCKA 439

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
                  E+F T     C      + SLI G  K G  + A  LF  +      A+ V Y
Sbjct: 440 KKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVY 499

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             LI      G+ +  + +   M   GC  D+   NT M
Sbjct: 500 TSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYM 538



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 165/400 (41%), Gaps = 63/400 (15%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V GAL         C  P + V +N  I  F   GN+  A +   ++ + G +P+  + 
Sbjct: 232 RVEGALALVDEVKGSCLEP-DIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSY 290

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            ++I  L + G ++   +L  +M            P  + Y ++I G       +    L
Sbjct: 291 TSMIWVLCKAGRLSEAEELFGQMETERA------VPCAYAYNTMIMGYGSAGQFENAYKL 344

Query: 123 FMEMKDKG-----INANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
             ++K++G     ++ N++L    KK K+ EA  L E  M++   P   TY  +++  C+
Sbjct: 345 LDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFE-AMKKDAEPNSSTYNIIIDMLCM 403

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            GKV  A  + D M   G  P++ + +++++  CK    E A  +       G       
Sbjct: 404 AGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRG------- 456

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI-------- 286
              CN  P + T    IDGL K G+V +   LF  +  +       ++ SLI        
Sbjct: 457 ---CN--PNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGR 511

Query: 287 -------------RGC------------CKF--GIFEIASELFNKLSCKNLVADVVAYNI 319
                        RGC            C F  G  E    +F  +     + DV +Y+I
Sbjct: 512 KEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSI 571

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           LIH L K GQ ++ + +  +M++ G ALD   +N ++  F
Sbjct: 572 LIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGF 611



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 115/255 (45%), Gaps = 21/255 (8%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD----KGINANTLLCKK-TKLVEANRLLEL 152
           PN  C   L+  L + R +D  + +   M+        +A T+L     +  +  R LEL
Sbjct: 146 PNPAC-ADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALEL 204

Query: 153 MMQR---GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           + Q    G    +  +T L+      G+V  A+AL D +      PD+  Y+V I+ + K
Sbjct: 205 LRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGK 264

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
             NV+ A             K F+E+K   + P+  +    I  LCK G + E  ELF  
Sbjct: 265 AGNVDMAW------------KFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQ 312

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +E          +N++I G    G FE A +L ++L  +  +  VV++N ++  LGK+ +
Sbjct: 313 METERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRK 372

Query: 330 IKKENYLLLSMEENG 344
           + +   L  +M+++ 
Sbjct: 373 VDEALTLFEAMKKDA 387



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 12/222 (5%)

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           + L +  +L +A R++  M +    P    YT L+       +   A+ L   M   G+ 
Sbjct: 155 SALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYE 214

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
             V  ++ L+    +   VE A+             + +E+K   + P+    N+ ID  
Sbjct: 215 VGVPLFTTLVRALAREGRVEGAL------------ALVDEVKGSCLEPDIVLYNVCIDCF 262

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K G+V    + F  L+    +     + S+I   CK G    A ELF ++  +  V   
Sbjct: 263 GKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCA 322

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            AYN +I   G  GQ +    LL  ++E GC   V +FN+++
Sbjct: 323 YAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSIL 364



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 12/192 (6%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L++      +++ A  +  +M R  F P   +Y+VLI    +    E A+ + R+M   G
Sbjct: 153 LVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVG 212

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
           ++          V    FT    +  L + G V   + L   ++ S  E  + ++N  I 
Sbjct: 213 YE----------VGVPLFTT--LVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCID 260

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
              K G  ++A + F++L  + L  D V+Y  +I  L K G++ +   L   ME      
Sbjct: 261 CFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVP 320

Query: 348 DVDTFNTLMISF 359
               +NT+++ +
Sbjct: 321 CAYAYNTMIMGY 332


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 151/330 (45%), Gaps = 26/330 (7%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           + P +  +FN LI+G C  G +  A +L  +M  FGC P+V T +TLI G  R   ++  
Sbjct: 232 HGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRG 291

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
             L +E+++          P+V  Y S+I G CK   +++   LF  M   GI  N    
Sbjct: 292 HDLLKELLS-----KNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTF 346

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                   K   +V A  + E M+  G  P I T+T L++G+C  GKV  ++ L+  +  
Sbjct: 347 NILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNA 406

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           +   P+ +++++L N  CK   + EA          GF     ++K  ++V + F  N  
Sbjct: 407 RNLSPNEYTFAILTNALCKENRLHEA---------RGF---LRDLKWRHIVAQPFMYNPV 454

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           IDG CK G+V E   +   +E   C+     +  LI G C  G    A  +FN++     
Sbjct: 455 IDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGC 514

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSM 340
             D +    LI  L K G +  E Y ++ +
Sbjct: 515 APDSITMTSLISCLLKAG-MPNEAYRIMQI 543



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 133/279 (47%), Gaps = 22/279 (7%)

Query: 94  GIYKPNVFC-YGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLCKKTKLVEAN 147
           G++ P   C +  LI GLC+   VD+  +LF EM+  G     I  NTL+    ++ E +
Sbjct: 230 GLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVD 289

Query: 148 R----LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           R    L EL+ +  L+P + TYT +++GYC +GK+  A  LF++M   G  P+ F++++L
Sbjct: 290 RGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNIL 349

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           ING+ K  ++  A N+  EM+L G              P+  T    IDG C+ G V   
Sbjct: 350 INGFGKVGDMVSAENMYEEMLLLG------------CPPDIITFTSLIDGHCRTGKVERS 397

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           ++L+  L   N       F  L    CK      A      L  +++VA    YN +I  
Sbjct: 398 LKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDG 457

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             K G + + N +L  MEE  C  D  T+  L+I    K
Sbjct: 458 FCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMK 496



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 92/215 (42%), Gaps = 19/215 (8%)

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK--NFNVEEAMNVSR 221
           TY+ LL     +G    A A++D M   G  PD      L++       FN+        
Sbjct: 139 TYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFNIARTWVDGV 198

Query: 222 EMILNGFKKIFNEMKLCNVVPETF--------------TC--NIFIDGLCKNGHVLEVME 265
           E  L  + K+ N++   N V E                +C  NI I GLC+ G V +  E
Sbjct: 199 EFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFE 258

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN-LVADVVAYNILIHAL 324
           LF  +    C   V  +N+LI G C+    +   +L  +L  KN L  DVV Y  +I   
Sbjct: 259 LFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGY 318

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            K G+++K + L  +M  +G   +  TFN L+  F
Sbjct: 319 CKLGKMEKASILFNNMISSGIKPNAFTFNILINGF 353


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 162/355 (45%), Gaps = 38/355 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI G C      DA Q VK+M   GC P++ T ++LI GL     M+    + 
Sbjct: 79  NVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVL 138

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QE++   G       P+V  Y + I GLCK   +D+  ++  EM   GI+ + +      
Sbjct: 139 QELMIESGRI-----PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSII 193

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  ++ +A ++ + M++RG  P   TY+ +L+      +++    + + M + G  
Sbjct: 194 SGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHY 253

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-----------------------FKKI 231
               +Y+ LI+   +  ++E A     + +  G                        K I
Sbjct: 254 ALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNI 313

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF-PTLEISNCELFVEIFNSLIRGCC 290
              M     +P   + N  IDGLCK+G+V +  +L    L+   C+  V  FN+LI G C
Sbjct: 314 LLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFC 373

Query: 291 KFGIFEIASELFNKLSCKNL-VADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           K G    A +L  ++  KN+ V DVV YN +I    K G +K+   LL  M+  G
Sbjct: 374 KAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 161/346 (46%), Gaps = 28/346 (8%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R +R L+   +N+LI G C     R A +L+  MA  G   +V T  TLI GL ++G+++
Sbjct: 4   RHFR-LDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLD 62

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----I 131
                 Q ++  M D G    PNV  Y +LIDGLCK R           M   G     +
Sbjct: 63  AA----QALLQKMADAG--CAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLV 116

Query: 132 NANTL---LCKKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
             N+L   LC   ++ +A  +L ELM++ G  P + TY   ++G C  GK++  + + + 
Sbjct: 117 TYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEE 176

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M R G  PDV ++  +I+G CK   +++A  V + M+  G             VP++ T 
Sbjct: 177 MDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERG------------CVPDSLTY 224

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           +I +D L +   +  V E+   +  S        +  LI    + G  E AS  + +   
Sbjct: 225 SIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAME 284

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
              V +V  +N  I AL + G+      +LL M E+G   ++ ++N
Sbjct: 285 AGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYN 330



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 24/193 (12%)

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------------------- 228
           MA + F  D   Y+ LI G CK      A+ +   M  NG+                   
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 229 ----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
               + +  +M      P   T    IDGLCK     + ++    +  S CE  +  +NS
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 285 LIRGCCKFGIFEIASELFNKLSCKN-LVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           LI G C     + A  +  +L  ++  + DVV YN  I  L K G++ K   +L  M+  
Sbjct: 121 LIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRG 180

Query: 344 GCALDVDTFNTLM 356
           G + DV TF +++
Sbjct: 181 GISPDVVTFCSII 193


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 162/381 (42%), Gaps = 38/381 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F     R   P N +T+N++I G    G++    +L  +M   G +PN  T + L+
Sbjct: 82  AVEVFDEMTERAVLP-NHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLL 140

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +GL R G M  T  L  EM +          P+ F Y  L DGL ++        LF + 
Sbjct: 141 SGLCRAGRMGETSALLDEMASQK------MVPDGFTYSILFDGLSRNGDSKAMLSLFGKY 194

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G+             LCK  K+  A  +L+ ++  GL P    Y  L+NGYC  G++
Sbjct: 195 LKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL 254

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------- 230
             A + F  M  +   PD  +Y+ LING CK   +  A ++  EM  NG           
Sbjct: 255 EGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 314

Query: 231 ---------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                          + +EM+   + P   +    ++  CKNG + E + +   +   + 
Sbjct: 315 IDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDV 374

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
               +++N++I    + G  + A  L  K+    +   +V YN+LI  L  + QI +   
Sbjct: 375 LPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEE 434

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           ++ S+  +    D  ++NTL+
Sbjct: 435 IINSLSNHRLIPDAVSYNTLI 455



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 156/330 (47%), Gaps = 25/330 (7%)

Query: 38  GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97
           G   D  +    +A+ G RP+    +  +      G++   + + + M        G   
Sbjct: 6   GRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRM-----GRDGAPP 60

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRL 149
           PN F Y  +I G+ +        ++F EM ++      I  NT++    K   L    RL
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 120

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            + M+  GL P   TY  LL+G C  G++    AL D MA +  +PD F+YS+L +G  +
Sbjct: 121 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 180

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           N + +  +++  + + NG            V    +TC+I ++GLCK+G V    E+  +
Sbjct: 181 NGDSKAMLSLFGKYLKNG------------VTIGDYTCSILLNGLCKDGKVSIAEEVLQS 228

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           L  +       I+N+LI G C+ G  E A   F ++  +++  D + YN LI+ L K  +
Sbjct: 229 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 288

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
           I     LL+ M++NG    V+TFNTL+ ++
Sbjct: 289 ITNAQDLLMEMQDNGVNPTVETFNTLIDAY 318



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 166/362 (45%), Gaps = 32/362 (8%)

Query: 14  FIRRCYR----PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
            +RR  R    P N  ++N +I G    G   DA ++  +M      PN  T +T+I G 
Sbjct: 49  MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 108

Query: 70  RRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
            + G++    +L  +MV +G+       KPN   Y  L+ GLC+   + +T  L  EM  
Sbjct: 109 IKGGDLEAGFRLRDQMVCHGL-------KPNAITYNVLLSGLCRAGRMGETSALLDEMAS 161

Query: 129 K-----GINANTLLCKKTKLVEANRLLELM---MQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +     G   + L    ++  ++  +L L    ++ G+    +T + LLNG C  GKV++
Sbjct: 162 QKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSI 221

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A  +  S+   G +P    Y+ LINGYC+   +E A +             F +MK  ++
Sbjct: 222 AEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFST------------FGQMKSRHI 269

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T N  I+GLCK   +    +L   ++ +     VE FN+LI    + G  E    
Sbjct: 270 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 329

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           + +++    L  +VV+Y  +++A  K G+I +   +L  M       +   +N ++ +++
Sbjct: 330 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 389

Query: 361 QK 362
           + 
Sbjct: 390 EH 391



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 161/359 (44%), Gaps = 39/359 (10%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           L  FG +++     + D T + L+ G C +G +  A ++++ +   G  P     +TLI 
Sbjct: 188 LSLFGKYLKNGV-TIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLIN 246

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G  +TG +        +M +         KP+   Y +LI+GLCK   +   +DL MEM+
Sbjct: 247 GYCQTGELEGAFSTFGQMKSRH------IKPDHITYNALINGLCKAERITNAQDLLMEMQ 300

Query: 128 DKGINA-----NTLLCKKTKLVEANR---LLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
           D G+N      NTL+    +  +  +   +L  M + GL P + +Y  ++N +C  GK+ 
Sbjct: 301 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 360

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------- 228
            A+A+ D M  K  +P+   Y+ +I+ Y ++   ++A  +  +M  NG            
Sbjct: 361 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 420

Query: 229 ------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
                       ++I N +    ++P+  + N  I   C  G++ + ++L   +     +
Sbjct: 421 KGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIK 480

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG-QIKKEN 334
             V  ++ LI G    G       L+ K+   N+V     +NI++ A  K G +IK E+
Sbjct: 481 STVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAED 539



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 134/298 (44%), Gaps = 40/298 (13%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T ++ GA   FG    R  +P + +T+N+LI G C    I +A  L+ +M   G  P V 
Sbjct: 251 TGELEGAFSTFGQMKSRHIKP-DHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVE 309

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           T +TLI    RTG +     +  EM  NG+       KPNV  YGS+++  CK+  + + 
Sbjct: 310 TFNTLIDAYGRTGQLEKCFIVLSEMQENGL-------KPNVVSYGSIVNAFCKNGKIPEA 362

Query: 120 KDLFMEM--KDKGINANTLLCKKTKLVEANR------LLELMMQRGLNPVIFTYTPLLNG 171
             +  +M  KD   NA          VE         L+E M   G++P I TY  L+ G
Sbjct: 363 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 422

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK- 230
            C   +++ A  + +S++    +PD  SY+ LI+  C   N+++A+++ + M   G K  
Sbjct: 423 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 482

Query: 231 ----------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
                                 ++ +M   NVVP     NI ++   K G+ ++  +L
Sbjct: 483 VRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDL 540



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 16/211 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++ S++  FC  G I +A  ++  M      PN    + +I      G  +    L 
Sbjct: 342 NVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILV 401

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-----GINANTL 136
           ++M  NG+        P++  Y  LI GLC    + + +++   + +       ++ NTL
Sbjct: 402 EKMKSNGI-------SPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTL 454

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   C +  + +A  L + M + G+   + TY  L++G    G++N    L+  M +   
Sbjct: 455 ISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 514

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           +P    +++++  Y K  N  +A ++ +EM+
Sbjct: 515 VPSNAIHNIMVEAYSKYGNEIKAEDLRKEML 545


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 168/384 (43%), Gaps = 49/384 (12%)

Query: 16  RRCYR---PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           RR  R   P    TF    +  C  G  RDA  L++ MA  GC P+     T+I  L   
Sbjct: 169 RRMLRDRVPPTTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQ 228

Query: 73  GNMNLTLKLHQEM---------------VNGMGDFGGIYK--------------PNVFCY 103
           G +     L  EM               V G+   G + +              P+V  Y
Sbjct: 229 GGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTY 288

Query: 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINA-NTLL---CKKTKLVEANRLLELMMQRGLN 159
           G L+ GLC+ R  D+   +   + +  +   NT++     + KL  A  L E+M  +G  
Sbjct: 289 GFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCP 348

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + TY  L++G C +G+   A+ + D M  KG  P++ +YS L++ +C+N   ++A  +
Sbjct: 349 PDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAM 408

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
             +M   GF               +   N  I  L K+G + E M L   ++   C+  +
Sbjct: 409 LDQMSAKGFSM------------NSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDI 456

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             +N++I   C     + A  +F  L  + +VA+ + YN LIHAL   G+ ++   L   
Sbjct: 457 CTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANE 516

Query: 340 MEENGCALDVDTFNTLMISFLQKE 363
           M  +GC LDV ++N L I  L KE
Sbjct: 517 MVLHGCPLDVVSYNGL-IKALCKE 539



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 178/374 (47%), Gaps = 41/374 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V  N++I+G   EG +  A++L + M + GC P+V T + L+ GL + G     +++
Sbjct: 314 VNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRM 373

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------ 135
             EM     +  G   PN+  Y +L+   C++ + D  + +  +M  KG + N+      
Sbjct: 374 LDEM-----EEKGC-APNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGI 427

Query: 136 --LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L K  KL EA RL++ M  +G  P I TY  ++   C   +++ A  +F ++  +G 
Sbjct: 428 IYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGV 487

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMIL----------NGFKK------------- 230
           + +  +Y+ LI+    +   +E + ++ EM+L          NG  K             
Sbjct: 488 VANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMM 547

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRG 288
           +  EM    + P  F+ N+ I+ LCK G V + +EL  + E+ N  L  +I  +N+LI G
Sbjct: 548 LLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALEL--SKEMLNQGLTPDIVTYNTLING 605

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            CK G    A  L  KL  +N+  D+V YNILI    K   +   + LL      G   +
Sbjct: 606 LCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPN 665

Query: 349 VDTFNTLMISFLQK 362
             T+  ++ +F+++
Sbjct: 666 ERTWGMMVQNFVRQ 679



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 166/362 (45%), Gaps = 41/362 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN ++ G C  G++R+A++LV +M   GC P+V T   L+ GL RT   +    +    
Sbjct: 252 TFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAM---- 307

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                  G + + NV    ++I G   +  + +  +L+  M  KG   +          L
Sbjct: 308 ------LGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGL 361

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK  +   A R+L+ M ++G  P I TY+ LL+ +C  G  + A A+ D M+ KGF  + 
Sbjct: 362 CKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNS 421

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM--KLCN------------- 239
             Y+ +I    K+  ++EAM + +EM   G K     +N +   LCN             
Sbjct: 422 QGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGN 481

Query: 240 -----VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                VV    T N  I  L  +G   E + L   + +  C L V  +N LI+  CK G 
Sbjct: 482 LLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGN 541

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + +  L  ++  K +  +  +YN+LI+ L K G+++    L   M   G   D+ T+NT
Sbjct: 542 VDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNT 601

Query: 355 LM 356
           L+
Sbjct: 602 LI 603



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 101/234 (43%), Gaps = 27/234 (11%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           L   M++  + P  FT+       C +G+   A+AL   MAR G +PD   Y  +I+   
Sbjct: 167 LYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALV 226

Query: 209 KNFNVEEAMNVSREMILNG-----------------------FKKIFNEMKLCNVVPETF 245
               V EA  +  EM+L G                         ++ + M +    P   
Sbjct: 227 AQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVV 286

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T    + GLC+     E   +   +     E+ V + N++IRGC   G    A+EL+  +
Sbjct: 287 TYGFLLRGLCRTRQADEAYAMLGRVP----EVNVVMLNTVIRGCLAEGKLARATELYEMM 342

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             K    DV  YNIL+H L K G+      +L  MEE GCA ++ T++TL+ SF
Sbjct: 343 GSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSF 396



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 33/190 (17%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL+ V++N LIK  C EGN+  +  L+++M T G +PN  + + LI  L + G +   L+
Sbjct: 523 PLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALE 582

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           L +EM+N      G+  P++  Y +LI+GLCK   V  T                     
Sbjct: 583 LSKEMLN-----QGL-TPDIVTYNTLINGLCK---VGWTH-------------------- 613

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                A  LLE +    ++P I TY  L++ +C V  ++ A  L D     G +P+  ++
Sbjct: 614 ----AALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTW 669

Query: 201 SVLINGYCKN 210
            +++  + + 
Sbjct: 670 GMMVQNFVRQ 679


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ S+I G+C  G +  A ++ K M   GC PN  T  +LI GL +        KLH
Sbjct: 457 NVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDK------KLH 510

Query: 83  QEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT----- 135
           + M  +  M + G    P V  Y +LI G CK    D    LF  M+  G+  +      
Sbjct: 511 KAMALITKMQEDG--ITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNV 568

Query: 136 ---LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  +  EA   L   +++G+     TYT L++G+   G  + A  L + M  +G
Sbjct: 569 LTDALCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEG 625

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              D+++YSVL+   CK   + EA+++  +M ++G K        CN+V  T    I I 
Sbjct: 626 CKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVK--------CNIVAYT----IIIS 673

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            + K G       LF  +  S  +     +   I   CK G  E A  L  ++    +  
Sbjct: 674 EMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTP 733

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           DVV YNI I+  G  G I +    L  M +  C  +  T+  L+  FL+
Sbjct: 734 DVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLK 782



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 155/373 (41%), Gaps = 38/373 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R     ++  T N+L+ G+C   ++R A  L+  M   GCR N  +   LI GL    
Sbjct: 204 LLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEAR 263

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            +   L L   MV+           N+  Y  LI GLCK+  +   + L  EM  +G+  
Sbjct: 264 CVREALVLVFMMVHDGCSL------NLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVP 317

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +           CK  ++ +A  +  LM Q G NP  +TY  L+ G C  GK++ A  L 
Sbjct: 318 SVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAEELL 376

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------------- 224
           +    +GF P V +++ LINGYCK   +++A+ V   MI                     
Sbjct: 377 NGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKK 436

Query: 225 --LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
             L   K+  NEM    + P   T    IDG CK G V   +E+F  +E   C      +
Sbjct: 437 CRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTY 496

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
            SLI G  +      A  L  K+    +   V+ Y  LI    K+ +      L   ME+
Sbjct: 497 GSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQ 556

Query: 343 NGCALDVDTFNTL 355
           NG   D   +N L
Sbjct: 557 NGLTPDEQAYNVL 569



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 158/347 (45%), Gaps = 32/347 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N++I G+C  G ++DA  +   M   GC P+  T ++LI GL         L   +E+
Sbjct: 321 TYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGL-----CGGKLDEAEEL 375

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ---------TKDLFMEMKDKGINANTL 136
           +NG    G  + P V  + +LI+G CK   +D          + +  ++++  G+  N L
Sbjct: 376 LNGAIARG--FTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVL 433

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           + KK +L EA   L  M   GL P + TYT +++GYC VG V  A+ +F  M  +G  P+
Sbjct: 434 I-KKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPN 492

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            ++Y  LI G  ++  + +AM +  +M  +G            + P   T    I G CK
Sbjct: 493 AWTYGSLIYGLIQDKKLHKAMALITKMQEDG------------ITPGVITYTTLIQGQCK 540

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
                    LF  +E +      + +N L    CK G    A E ++ L  K +V   V 
Sbjct: 541 KHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSG---RAEEAYSFLVRKGVVLTKVT 597

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y  L+    K G       L+  M   GC  D+ T++ L+ +  +++
Sbjct: 598 YTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQK 644



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 167/367 (45%), Gaps = 35/367 (9%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I R + P   +TF +LI G+C    I DA ++   M +  C+ ++     LI  L +   
Sbjct: 380 IARGFTP-TVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIK--- 435

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
               LK  +E +N M  F     PNV  Y S+IDG CK  +V    ++F  M+ +G + N
Sbjct: 436 -KCRLKEAKETLNEM--FANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPN 492

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                     L +  KL +A  L+  M + G+ P + TYT L+ G C   + + A  LF+
Sbjct: 493 AWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFE 552

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMN-----------VSREMILNGFKKIFNE- 234
            M + G  PD  +Y+VL +  CK+   EEA +           V+   +++GF K  N  
Sbjct: 553 MMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTD 612

Query: 235 ------MKLCN--VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
                  K+ N     + +T ++ +  LCK   + E + +   + +S  +  +  +  +I
Sbjct: 613 FAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIII 672

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
               K G  + A  LFN++           Y + I +  K G+I++  +L+  ME +G  
Sbjct: 673 SEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVT 732

Query: 347 LDVDTFN 353
            DV T+N
Sbjct: 733 PDVVTYN 739



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 157/337 (46%), Gaps = 46/337 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N++I  +C +G++  A +    +   G + +  TC+ L+ G  RT ++     L 
Sbjct: 178 DTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLL 237

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             M+  MG      + N + Y  LI GLC+ R                       C +  
Sbjct: 238 M-MMPLMG-----CRRNEYSYTILIQGLCEAR-----------------------CVREA 268

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           LV    L+ +M+  G +  + TYT L+ G C  G+++ A  L D M  +G +P V++Y+ 
Sbjct: 269 LV----LVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNA 324

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           +I+GYCK+  +++A+ +   M  NG          CN  P+ +T N  I GLC  G + E
Sbjct: 325 MIDGYCKSGRMKDALGIKALMEQNG----------CN--PDDWTYNSLIYGLC-GGKLDE 371

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             EL            V  F +LI G CK    + A  + + +   N   D+ AY +LI+
Sbjct: 372 AEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLIN 431

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            L K+ ++K+    L  M  NG A +V T+ +++  +
Sbjct: 432 VLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGY 468



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 167/397 (42%), Gaps = 55/397 (13%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           SF+ R    L  VT+ SL+ GF   GN   A+ L++KM   GC+ ++ T   L+  L + 
Sbjct: 584 SFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQ 643

Query: 73  GNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
             +N  L +  +M V+G+       K N+  Y  +I  + K+   D  K LF EM   G 
Sbjct: 644 KKLNEALSILDQMTVSGV-------KCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGH 696

Query: 132 NAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
             +        +  CK  ++ EA  L+  M + G+ P + TY   +NG   +G ++ A +
Sbjct: 697 KPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFS 756

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCK----NFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
               M      P+ ++Y +L+  + K    N +  +   +   + LN   ++   M    
Sbjct: 757 TLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMMKHG 816

Query: 240 VVPETFTCNIFIDGLCKNGHVLEV---------MELFPTLEIS--------NCELF---- 278
           + P   T +  I G CK   + E           ++ P  EI         + +LF    
Sbjct: 817 LNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAV 876

Query: 279 --------------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                         +E ++ LI G C  G ++ A  LF  L   +   + VA+ IL   L
Sbjct: 877 SFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGL 936

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            K G +   + LL +M+   C +D ++++ L  S  +
Sbjct: 937 LKAGHVDFCSQLLAAMDNRHCRIDSESYSMLTDSIRE 973



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 40/78 (51%)

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N  +R   +F + E   +L++ L  + L+ D V YN +I A  K+G +   +     + 
Sbjct: 147 YNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLR 206

Query: 342 ENGCALDVDTFNTLMISF 359
           E+G  +D  T N L++ +
Sbjct: 207 ESGMQMDTYTCNALLLGY 224


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 156/344 (45%), Gaps = 34/344 (9%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCM-EGNIRDASQLVKKMATFGCRPNVTTCD 63
           L   M+F  ++R      + V+ N LIK  C   G I  A ++ ++M   GC P+  T  
Sbjct: 136 LKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYG 195

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           TLI GL + G      +L +EM     D  G   P+V  Y  L+ GLC+   VD+   LF
Sbjct: 196 TLINGLCKLGKTFEAKELFKEM-----DTKGC-SPSVVTYSCLMHGLCQAGNVDEAMGLF 249

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            +MK K I  N          LCK    +EA  LLE+M+++   P + TY+ L+NG C  
Sbjct: 250 DKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKE 309

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           GK+  A+   D M  +G  PD   Y  +ING+C     +EA     EM+L          
Sbjct: 310 GKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLG--------- 360

Query: 236 KLCNVVPETFTC-------NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
               + P   T        N+ + GLC NG++    +L+  +      +    F+SL++ 
Sbjct: 361 ---QISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKC 417

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
            CK G    A+ +F+++     V D   ++ ++       ++++
Sbjct: 418 FCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDRRKVRE 461



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 165/357 (46%), Gaps = 34/357 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           + +  F S+ +G+       DA ++  KM  FGC+P   +  ++   L     + + +  
Sbjct: 83  ITEEIFLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSF 142

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR-LVDQTKDLFMEMKDKGINANTL---- 136
           ++ M   MG    +   NV     LI  LCK+   +D   ++F EM  +G + ++     
Sbjct: 143 YKYMRE-MGVRQSVVSLNV-----LIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGT 196

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  K  EA  L + M  +G +P + TY+ L++G C  G V+ A+ LFD M +K 
Sbjct: 197 LINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKA 256

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P+VF+YS L++G CKN    EAM +   M+    K            P   T +  I+
Sbjct: 257 IEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHK------------PNMVTYSTLIN 304

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCK G + E +E    +++   +    ++  +I G C    F+ A+   +++    +  
Sbjct: 305 GLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISP 364

Query: 313 DVVAY-------NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + V +       N+++  L   G + +   L + M   G ++D  TF++L+  F +K
Sbjct: 365 NRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKK 421



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 24/226 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F    ++   P N  T++SL+ G C  G   +A +L++ M     +PN+ T  TLI
Sbjct: 245 AMGLFDKMKKKAIEP-NVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLI 303

Query: 67  TGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            GL + G +   ++    M + G+       KP+   YG +I+G C  R   +      E
Sbjct: 304 NGLCKEGKLAEAVETLDRMKLQGL-------KPDAGLYGKIINGFCNIRKFQEAATYLDE 356

Query: 126 MKDKGINANTL---------------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
           M    I+ N +               LC    L  + +L   M  RG++    T+  L+ 
Sbjct: 357 MVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVK 416

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
            +C  G ++ A  +FD M   G +PD   +S ++ G+     V EA
Sbjct: 417 CFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDRRKVREA 462


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 168/348 (48%), Gaps = 29/348 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTF+ L++ FC  G +  A Q++++M+  GC  N T C+ +I  + + G ++   +  
Sbjct: 284 NEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF- 342

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------- 135
              +N MG +G    P+   Y +++ GLC+    +  K+L  EM  K    N        
Sbjct: 343 ---LNNMGSYG--CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFI 397

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            +LC+K  + +A  L+E M + G    I TY  L+NG+C+ G+V+ A+ LF SM  K   
Sbjct: 398 CILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK--- 454

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  +Y+ L+ G C         N  R   L+   ++  EM   +  P   T N+ +   
Sbjct: 455 PNTITYTTLLTGLC---------NAER---LDAAAELLAEMLQKDCAPNVVTFNVLVSFF 502

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G + E +EL   +    C   +  +N+L+ G       E A EL + L    +  D+
Sbjct: 503 CQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDI 562

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V Y+ +I  L +E ++++   +   +++ G       +N ++++  ++
Sbjct: 563 VTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKR 610



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 166/368 (45%), Gaps = 30/368 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V  AL      + R  +P + VT+  L++  C       A +++ +M   GC PN+ T 
Sbjct: 160 RVGEALSLLDDMLHRGCQP-SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTY 218

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + +I G+ R G ++      +E +N +  +G  ++P+   Y +++ GLC  +  +  ++L
Sbjct: 219 NVIINGMCREGRVDDA----REFLNRLSSYG--FQPDTVSYTTVLKGLCAAKRWEDVEEL 272

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EM +K    N +         C+   +  A ++LE M   G          ++N  C 
Sbjct: 273 FAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK 332

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G+V+ A    ++M   G  PD  SY+ ++ G C+    E+A            K++  E
Sbjct: 333 QGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDA------------KELLKE 380

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M   N  P   T N FI  LC+ G + +   L   +    CE+ +  +N+L+ G C  G 
Sbjct: 381 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR 440

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A ELF  + CK    + + Y  L+  L    ++     LL  M +  CA +V TFN 
Sbjct: 441 VDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 497

Query: 355 LMISFLQK 362
           L+  F QK
Sbjct: 498 LVSFFCQK 505



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 156/361 (43%), Gaps = 40/361 (11%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89
           LI+  C  G   DA+++++     G   +V   +TL+ G  R G ++   +L   M    
Sbjct: 84  LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP--- 140

Query: 90  GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKT 141
                   P+ + Y  +I GLC    V +   L  +M  +G   + +        +CK T
Sbjct: 141 ------VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKST 194

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
              +A  +L+ M  +G  P I TY  ++NG C  G+V+ A    + ++  GF PD  SY+
Sbjct: 195 GFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYT 254

Query: 202 VLINGYCKNFNVEEAMNVSREMI-----------------------LNGFKKIFNEMKLC 238
            ++ G C     E+   +  EM+                       +    ++  +M   
Sbjct: 255 TVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGH 314

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
                T  CNI I+ +CK G V +  +    +    C      + ++++G C+   +E A
Sbjct: 315 GCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDA 374

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            EL  ++  KN   + V +N  I  L ++G I++   L+  M E+GC +++ T+N L+  
Sbjct: 375 KELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNG 434

Query: 359 F 359
           F
Sbjct: 435 F 435



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 157/342 (45%), Gaps = 25/342 (7%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N+ ++      ++ +A++LV +  + G  P+V  C  LI  L R G  +   ++ +    
Sbjct: 47  NARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLR---- 102

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------LCKKT 141
              +  G    +VF Y +L+ G C+   +D  + L   M     +A T       LC + 
Sbjct: 103 -AAERSGT-AVDVFAYNTLVAGYCRYGQLDAARRLIASMP-VAPDAYTYTPIIRGLCDRG 159

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           ++ EA  LL+ M+ RG  P + TYT LL   C       A+ + D M  KG  P++ +Y+
Sbjct: 160 RVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYN 219

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
           V+ING C+   V++A      +   GF+            P+T +    + GLC      
Sbjct: 220 VIINGMCREGRVDDAREFLNRLSSYGFQ------------PDTVSYTTVLKGLCAAKRWE 267

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           +V ELF  +   NC      F+ L+R  C+ G+ E A ++  ++S     A+    NI+I
Sbjct: 268 DVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVI 327

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + + K+G++      L +M   GC+ D  ++ T++    + E
Sbjct: 328 NTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAE 369



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 166/371 (44%), Gaps = 39/371 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I G C EG + DA + + +++++G +P+  +  T++ GL          +L 
Sbjct: 214 NIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELF 273

Query: 83  QEMV--NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-- 138
            EM+  N M        PN   +  L+   C+  +V++   +  +M   G  ANT LC  
Sbjct: 274 AEMMEKNCM--------PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNI 325

Query: 139 ------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K+ ++ +A + L  M   G +P   +YT +L G C   +   A  L   M RK 
Sbjct: 326 VINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKN 385

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---KKIFNEM 235
             P+  +++  I   C+   +E+A  +  +M              ++NGF    ++ + +
Sbjct: 386 CPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSAL 445

Query: 236 KLCNVVP---ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           +L   +P    T T    + GLC    +    EL   +   +C   V  FN L+   C+ 
Sbjct: 446 ELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQK 505

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G+ + A EL  ++       +++ YN L+  +  +   ++   LL  +  NG + D+ T+
Sbjct: 506 GLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTY 565

Query: 353 NTLMISFLQKE 363
           +++ I  L +E
Sbjct: 566 SSI-IGVLSRE 575



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 144/322 (44%), Gaps = 38/322 (11%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N+VTFN+ I   C +G I  A+ L+++M+  GC  N+ T + L+ G    G ++  L+
Sbjct: 387 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------ 134
           L   M           KPN   Y +L+ GLC    +D   +L  EM  K    N      
Sbjct: 447 LFYSMP---------CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 497

Query: 135 --TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             +  C+K  + EA  L+E MM+ G  P + TY  LL+G         A+ L   +   G
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNG 557

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+ +YS +I    +   VEEA+            K+F+ ++   + P+    N  + 
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAI------------KMFHIVQDLGMRPKAVIYNKILL 605

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK  +    ++ F  +  + C      + +LI G        +A+E F K + ++L+ 
Sbjct: 606 ALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEG--------LANEDFLKET-RDLLR 656

Query: 313 DVVAYNILIHALGKEGQIKKEN 334
           ++ +  +L   L +E + K  N
Sbjct: 657 ELCSRGVLNKNLLEEWRPKFSN 678



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 146/327 (44%), Gaps = 23/327 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + +++ +++KG C      DA +L+K+M    C PN  T +T I  L + G +     L 
Sbjct: 354 DTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLI 413

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANTLL--- 137
           ++M     +       N+  Y +L++G C    VD   +LF  M  K   I   TLL   
Sbjct: 414 EQMSEHGCEV------NIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGL 467

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +L  A  LL  M+Q+   P + T+  L++ +C  G ++ AI L + M   G  P++
Sbjct: 468 CNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNL 527

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ L++G   + N EEA+ +   ++ NG            V P+  T +  I  L + 
Sbjct: 528 ITYNTLLDGITNDCNSEEALELLHGLVSNG------------VSPDIVTYSSIIGVLSRE 575

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V E +++F  ++         I+N ++   CK    + A + F  +     + + + Y
Sbjct: 576 DRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 635

Query: 318 NILIHALGKEGQIKKENYLLLSMEENG 344
             LI  L  E  +K+   LL  +   G
Sbjct: 636 ITLIEGLANEDFLKETRDLLRELCSRG 662


>gi|15219046|ref|NP_175671.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207557|sp|Q9SSR4.1|PPR77_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52620
 gi|5903044|gb|AAD55603.1|AC008016_13 Contains 3 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332194709|gb|AEE32830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 162/347 (46%), Gaps = 27/347 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            T+N LI   C EG    A   + + +  G  PN  +   LI    ++   ++  KL  +
Sbjct: 346 ATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQ 405

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M           KP++  YG LI GL     +D   ++ +++ D+G++ +          
Sbjct: 406 MAERGC------KPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSG 459

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  + + A  L   M+ R + P  + Y  L++G+   G  + A  +F     KG   D
Sbjct: 460 LCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVD 519

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V  ++ +I G+C++  ++EA+               N M   ++VP+ FT +  IDG  K
Sbjct: 520 VVHHNAMIKGFCRSGMLDEAL------------ACMNRMNEEHLVPDKFTYSTIIDGYVK 567

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              +   +++F  +E + C+  V  + SLI G C  G F++A E F ++  ++LV +VV 
Sbjct: 568 QQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVT 627

Query: 317 YNILIHALGKEGQ-IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           Y  LI +L KE   ++K  Y    M  N C  +  TFN L+  F++K
Sbjct: 628 YTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKK 674



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 173/397 (43%), Gaps = 74/397 (18%)

Query: 30  LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM-NLTLKLHQEMVNG 88
           L+KG C EG +    +L++     GC PN+   +T+I G  + G++ N  L   +  + G
Sbjct: 211 LVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKG 270

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------------ 136
                  + P +  +G++I+G CK+     +  L  E+K++G+  +              
Sbjct: 271 -------FMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRH 323

Query: 137 -------------------------------LCKKTKLVEANRLLELMMQRGLNPVIFTY 165
                                          LCK+ K   A   L+   ++GL P   +Y
Sbjct: 324 GYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSY 383

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
            PL+  YC   + ++A  L   MA +G  PD+ +Y +LI+G   + ++++A+N+  ++I 
Sbjct: 384 APLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLID 443

Query: 226 NGF-----------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
            G                        K +F+EM   N++P+ +     IDG  ++G   E
Sbjct: 444 RGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDE 503

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             ++F        ++ V   N++I+G C+ G+ + A    N+++ ++LV D   Y+ +I 
Sbjct: 504 ARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIID 563

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
              K+  +     +   ME+N C  +V T+ +L+  F
Sbjct: 564 GYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGF 600



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 171/383 (44%), Gaps = 52/383 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N++++  LI+ +C       AS+L+ +MA  GC+P++ T   LI GL  +G+M+  + + 
Sbjct: 379 NNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMK 438

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            ++++      G+  P+   Y  L+ GLCK       K LF EM D+ I  +  +     
Sbjct: 439 VKLIDR-----GV-SPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLI 492

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               +     EA ++  L +++G+   +  +  ++ G+C  G ++ A+A  + M  +  +
Sbjct: 493 DGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLV 552

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKI 231
           PD F+YS +I+GY K  ++  A+ + R M              ++NGF         ++ 
Sbjct: 553 PDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEET 612

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCC 290
           F EM+L ++VP   T    I  L K    LE    +  L ++N  +  E+ FN L++G  
Sbjct: 613 FKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFV 672

Query: 291 K--------------FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
           K               G   + SE F+++          AYN  +  L   G +K     
Sbjct: 673 KKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMF 732

Query: 337 LLSMEENGCALDVDTFNTLMISF 359
              M + G + D  +F  ++  F
Sbjct: 733 QDKMVKKGFSPDPVSFAAILHGF 755



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 35/314 (11%)

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK---------------PNVFCYGSLIDGL 110
           + G  R  N+ LT +    +++   + G + K               P+V    SL+  L
Sbjct: 121 VLGNLRNENVKLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVPDVIACNSLLSLL 180

Query: 111 CKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVI 162
            K R +   + ++ EM D+G + +          +C + K+    +L+E    +G  P I
Sbjct: 181 VKSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGRWGKGCIPNI 240

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
             Y  ++ GYC +G +  A  +F  +  KGFMP + ++  +ING+CK     E   V+ +
Sbjct: 241 VFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCK-----EGDFVASD 295

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
            +L       +E+K   +    +  N  ID   ++G+ ++  E    +  ++C+  V  +
Sbjct: 296 RLL-------SEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATY 348

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N LI   CK G  E+A    ++ S K L+ + ++Y  LI A  K  +    + LLL M E
Sbjct: 349 NILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAE 408

Query: 343 NGCALDVDTFNTLM 356
            GC  D+ T+  L+
Sbjct: 409 RGCKPDIVTYGILI 422



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 97/253 (38%), Gaps = 64/253 (25%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V  N++IKGFC  G + +A   + +M      P+  T  T+I G  +  +M   +K+ + 
Sbjct: 521 VHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRY 580

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M           KPNV  Y SLI+G C        ++ F EM+ + +  N +        
Sbjct: 581 MEKNKC------KPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRS 634

Query: 137 LCKKTKLVE-ANRLLELMMQRGLNPVIFTYTPLLNGY----------------------- 172
           L K++  +E A    ELMM     P   T+  LL G+                       
Sbjct: 635 LAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSSLF 694

Query: 173 --------------------------CLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
                                     C+ G V  A    D M +KGF PD  S++ +++G
Sbjct: 695 SEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSFAAILHG 754

Query: 207 YCKNFNVEEAMNV 219
           +C   N ++  N+
Sbjct: 755 FCVVGNSKQWRNM 767


>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
 gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
          Length = 871

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 171/408 (41%), Gaps = 80/408 (19%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V  N+++ GFC EG + +A +LV++M   G  PNV T +  I+ L + G +    ++
Sbjct: 210 MNLVVCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARISALCKAGRVLDAYRI 269

Query: 82  HQEMVNGMGDFGGIYKPNV---------FCYGSLID------------------------ 108
             +M        G+ +P+          FC   ++D                        
Sbjct: 270 FNDMQEKWER--GLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRW 327

Query: 109 --GLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGL 158
             GL ++ +V + ++L  EM  +G+  N+         LCK+ K  +  ++ + +    +
Sbjct: 328 LSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVM 387

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P + TYT LL+ YC  G    A  + D MA+KG  P+ F+Y+VL+    K   + EA  
Sbjct: 388 TPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAER 447

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL-------- 270
           +   M   G+              +T +CNI IDGLC+N  +   M++   +        
Sbjct: 448 LLERMSEKGYSL------------DTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLAL 495

Query: 271 ---------------EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
                              C      +++L+   CK G F+ A +   ++  K++  D V
Sbjct: 496 GRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSV 555

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
            Y+  IH   K G+      +L  ME+ GC     T+N L+  F +K 
Sbjct: 556 LYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGFREKH 603



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 161/363 (44%), Gaps = 45/363 (12%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM- 85
           +N L+     E        L K +   G  P+V T + L+  L   G M L  ++   M 
Sbjct: 118 YNRLLLAALQEARFDLVESLYKDLLLSGAAPDVFTRNILLQALCAAGRMELARRVFDAMP 177

Query: 86  --------------------VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
                               ++ +G    +   N+    +++ G C++  VD+ + L   
Sbjct: 178 ERNEFSFGILARGYCRAGRSMDALGVLDSMPTMNLVVCNTVVAGFCREGQVDEAERLVER 237

Query: 126 MKDKGINAN--------TLLCKKTKLVEANRLLELM---MQRGL-NPVIFTYTPLLNGYC 173
           M+D+G+  N        + LCK  ++++A R+   M    +RGL  P   T+  +L+G+C
Sbjct: 238 MRDEGLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFC 297

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
             G V+ A  L D M   GF+  V SY+  ++G  +N  V EA  + REM   G      
Sbjct: 298 EAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLREMAHEG------ 351

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                 V P ++T NI +DGLCK G   +V ++   ++       V  + SL+   C  G
Sbjct: 352 ------VQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEG 405

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A+ + ++++ K    +   YN+L+ +L K G+I +   LL  M E G +LD  + N
Sbjct: 406 NAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCN 465

Query: 354 TLM 356
            ++
Sbjct: 466 III 468



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 171/384 (44%), Gaps = 32/384 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPL---NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV 59
           +VL A   F     +  R L   + VTF+ ++ GFC  G + +A  LV  M   G    V
Sbjct: 262 RVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRV 321

Query: 60  TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL---V 116
            + +  ++GL R G +    +L +EM +      G+ +PN + Y  ++DGLCK+     V
Sbjct: 322 ESYNRWLSGLVRNGMVGEAQELLREMAHE-----GV-QPNSYTYNIIVDGLCKEGKAFDV 375

Query: 117 DQTKDLFME--MKDKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
            + +D      M    +   +LL   C +     ANR+L+ M Q+G  P  FTY  LL  
Sbjct: 376 RKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQS 435

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG---- 227
               G++  A  L + M+ KG+  D  S +++I+G C+N  ++ AM++   M   G    
Sbjct: 436 LWKAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLAL 495

Query: 228 ---------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                         +  K C  +P+  T +  +  LCK G   E  +    +   +    
Sbjct: 496 GRLGYSFLSLLTDSSSSKRC--LPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPD 553

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
             ++++ I G CK G   +A ++   +  K        YN+LI    ++    +   L+ 
Sbjct: 554 SVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLIS 613

Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
            M+  G   +V T+N+L+ SF ++
Sbjct: 614 EMKGKGICPNVMTYNSLIKSFCER 637



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 157/387 (40%), Gaps = 91/387 (23%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L++     G I +A +L+++M+  G   +  +C+ +I GL R   +++ +   
Sbjct: 425 NSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAM--- 481

Query: 83  QEMVNGMGDFGGI------YK---------------PNVFCYGSLIDGLCKDRLVDQTKD 121
            ++V+GM + G +      Y                P+   Y +L+  LCK+   D+ K 
Sbjct: 482 -DIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEGRFDEAKK 540

Query: 122 LFMEMKDKGINANTLL--------CK--KTKLV--------------------------- 144
             +EM  K I+ +++L        CK  KT L                            
Sbjct: 541 KLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGFR 600

Query: 145 ------EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
                 E  +L+  M  +G+ P + TY  L+  +C  G VN A+ L D M +   +P++ 
Sbjct: 601 EKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDEMLQNEIVPNIT 660

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           S+ +LI  +CK  +   A            +++F+   L     +    ++    L   G
Sbjct: 661 SFELLIKAFCKTSDFSAA------------QRVFD-ASLSTCGQKEVLYSLMCTQLSTYG 707

Query: 259 HVLEVMELFPTLEISNCELFVEI----FNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
             LE M +  T+     EL + I    +  +I G CK    +    L   L  K    D 
Sbjct: 708 RWLEAMNILETV----LELRISIHRFPYKQIIEGLCKVDEVDHGHRLLKLLMVKGYSFDP 763

Query: 315 VAYNILIHALGKEGQIKKENYLLLSME 341
            A+  +I AL + G  KK++  +LS +
Sbjct: 764 AAFMPVIDALSERG--KKQHVDMLSQK 788



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 21/210 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N LI GF  + N  +  +L+ +M   G  PNV T ++LI      G +N  + L  EM
Sbjct: 591 TYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDEM 650

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-------NTLLC 138
           +           PN+  +  LI   CK       + +F    D  ++         +L+C
Sbjct: 651 LQNE------IVPNITSFELLIKAFCKTSDFSAAQRVF----DASLSTCGQKEVLYSLMC 700

Query: 139 KK----TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            +     + +EA  +LE +++  ++   F Y  ++ G C V +V+    L   +  KG+ 
Sbjct: 701 TQLSTYGRWLEAMNILETVLELRISIHRFPYKQIIEGLCKVDEVDHGHRLLKLLMVKGYS 760

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
            D  ++  +I+   +    +    +S++M+
Sbjct: 761 FDPAAFMPVIDALSERGKKQHVDMLSQKMM 790


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 167/360 (46%), Gaps = 38/360 (10%)

Query: 9   MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           M F  +     RP N VT+ +L+ GFC    + +A +L+  M+  GC PN    D LI G
Sbjct: 625 MYFKQYDDNSERP-NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDG 683

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L + G ++      QE+   M + G  +   ++ Y SLID   K +  D    +  +M +
Sbjct: 684 LCKVGKLDEA----QEVKTEMSEHG--FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE 737

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
                N +        LCK  K  EA +L+++M ++G  P + TYT +++G+ ++GK+  
Sbjct: 738 NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIET 797

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILN 226
            + L + M  KG  P+  +Y VLI+  CKN  ++ A N+  EM              ++ 
Sbjct: 798 CLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIE 857

Query: 227 GFKKIF-------NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL-- 277
           GF K F       +E+   +  P      + ID L K   +   + L   +   +  L  
Sbjct: 858 GFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVD 917

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
           +   +NSLI   C     E A +LF++++ K ++ ++ ++  LI  L +  +I +   LL
Sbjct: 918 YSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 977



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 162/362 (44%), Gaps = 42/362 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN +  +S  +  C  G    A  ++++M   G  P+ +T   ++  L     M L   L
Sbjct: 446 LNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLL 505

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            +EM  G     G+   +V+ Y  ++D  CK  L++Q +  F EM++ G   N +     
Sbjct: 506 FEEMKRG-----GLV-ADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTAL 559

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  K+  AN L E M+  G  P I TY+ L++G+C  G+V  A  +F+ M     
Sbjct: 560 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKD 619

Query: 194 MPDV----------------FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
           +PDV                 +Y  L++G+CK+  VEEA            +K+ + M +
Sbjct: 620 VPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEA------------RKLLDAMSM 667

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
               P     +  IDGLCK G + E  E+   +        +  ++SLI    K    ++
Sbjct: 668 EGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDL 727

Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           AS++ +K+   +   +VV Y  +I  L K G+  +   L+  MEE GC  +V T+  ++ 
Sbjct: 728 ASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787

Query: 358 SF 359
            F
Sbjct: 788 GF 789



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 142/341 (41%), Gaps = 40/341 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  ++  FC  G I  A +   +M   GC PNV T   LI    +   ++   +L + M
Sbjct: 520 TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 579

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           ++     G +  PN+  Y +LIDG CK   V++   +F  M           C    + +
Sbjct: 580 LSE----GCL--PNIVTYSALIDGHCKAGQVEKACQIFERM-----------CGSKDVPD 622

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
            +   +        P + TY  LL+G+C   +V  A  L D+M+ +G  P+   Y  LI+
Sbjct: 623 VDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALID 682

Query: 206 GYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMKLCNVVP 242
           G CK   ++EA  V  EM  +GF                        K+ ++M   +  P
Sbjct: 683 GLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAP 742

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
                   IDGLCK G   E  +L   +E   C+  V  + ++I G    G  E   EL 
Sbjct: 743 NVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELL 802

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
            ++  K +  + V Y +LI    K G +   + LL  M++ 
Sbjct: 803 ERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT 843



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 154/373 (41%), Gaps = 48/373 (12%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            N L++  C  G+   A + + ++  F  RP+ +T + LI    +   ++    +H+EM 
Sbjct: 203 LNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMS 262

Query: 87  NGMGDFGGI--------------------------YKPNVFCYGSLIDGLCKDRLVDQTK 120
                  G                           + P+   Y  LI GLC+  L ++  
Sbjct: 263 LANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAM 322

Query: 121 DLFMEMKDKG-----INANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           D    M+        +  +TLLC    K +L    R+L +MM  G  P    +  L++ Y
Sbjct: 323 DFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAY 382

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  G  + A  L   M + G MP    Y++LI   C +   ++++N     +L+  +K +
Sbjct: 383 CTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGD---KDSLNCD---LLDLAEKAY 436

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLE----VMELFPTLEISNCELFVEIFNSLIRG 288
           +EM    VV      + F   LC  G   +    + E+     I +   + ++ N L   
Sbjct: 437 SEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYL--- 493

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C     E+A  LF ++    LVADV  Y I++ +  K G I++       M E GC  +
Sbjct: 494 -CNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPN 552

Query: 349 VDTFNTLMISFLQ 361
           V T+  L+ ++L+
Sbjct: 553 VVTYTALIHAYLK 565


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 27/333 (8%)

Query: 35  CMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGG 94
           C  GN  ++  L++ M   G  P+V  C  LI G         TL+   + V  M     
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGF-------FTLRNVPKAVRVMEILEK 148

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEA 146
             +P+VF Y +LI+G CK   +D    +   M+ K  + +T+        LC + KL  A
Sbjct: 149 FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 208

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
            ++L+ ++     P + TYT L+    L G V+ A+ L D M  +G  PD+F+Y+ +I G
Sbjct: 209 LKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRG 268

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            CK   V+ A  + R +          E+K C   P+  + NI +  L   G   E  +L
Sbjct: 269 MCKEGMVDRAFEMIRNL----------ELKGCE--PDVISYNILLRALLNQGKWEEGEKL 316

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +    C+  V  ++ LI   C+ G  E A  L   +  K L  D  +Y+ LI A  +
Sbjct: 317 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 376

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           EG++      L +M  +GC  D+  +NT++ + 
Sbjct: 377 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATL 409



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 169/378 (44%), Gaps = 63/378 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N +I   C  G +  A +++ ++ +  C+P V T   LI      G ++  LKL 
Sbjct: 188 DTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLL 247

Query: 83  QEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------- 134
            EM++ G+       KP++F Y ++I G+CK+ +VD+  ++   ++ KG   +       
Sbjct: 248 DEMLSRGL-------KPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNIL 300

Query: 135 ------------------------------------TLLCKKTKLVEANRLLELMMQRGL 158
                                               T LC+  K+ EA  LL+LM ++GL
Sbjct: 301 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 360

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P  ++Y PL+  +C  G+++VAI   ++M   G +PD+ +Y+ ++   CKN   ++A+ 
Sbjct: 361 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL- 419

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                      +IF ++      P + + N     L  +G  +  + +   +  +  +  
Sbjct: 420 -----------EIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPD 468

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
              +NS+I   C+ G+ + A EL   +        VV YNI++    K  +I+    +L 
Sbjct: 469 EITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLD 528

Query: 339 SMEENGCALDVDTFNTLM 356
           SM  NGC  +  T+  L+
Sbjct: 529 SMVGNGCRPNETTYTVLI 546



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 109/233 (46%), Gaps = 20/233 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +++ LI  FC EG +  A + ++ M + GC P++   +T++  L + G  +  L    E+
Sbjct: 366 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL----EI 421

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
              +G+ G    PN   Y ++   L       +   + +EM   GI+ + +        L
Sbjct: 422 FGKLGEVG--CSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCL 479

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C++  + +A  LL  M     +P + TY  +L G+C   ++  AI + DSM   G  P+ 
Sbjct: 480 CREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNE 539

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMI-LNG-----FKKIFNEMKLCNVVPET 244
            +Y+VLI G        EAM ++ +++ +N      FK++     L NV+  +
Sbjct: 540 TTYTVLIEGIGFAGYRAEAMELANDLVRINAISEYSFKRLHRTFPLLNVLQRS 592



 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R C    + VT+N ++ GFC    I DA  ++  M   GCRPN TT   LI G+   G 
Sbjct: 495 MRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGY 554

Query: 75  MNLTLKLHQEMV 86
               ++L  ++V
Sbjct: 555 RAEAMELANDLV 566


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 164/366 (44%), Gaps = 38/366 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LNDVTFN +I     EG++ +A +LV  M     + +  T + LIT L   G +     L
Sbjct: 272 LNDVTFNVVISFLAREGHLENAVKLVDSM-RLSKKASSFTYNPLITALLERGFVRKAEAL 330

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
             EM N      GI  P V  Y ++I GL K    +  +  F EM+  G     I  N+L
Sbjct: 331 QMEMENE-----GIM-PTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSL 384

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   CK   L EA  LL  + + GL P + TY  L++GYC +G +  A  L + M  +G 
Sbjct: 385 LNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGC 444

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--------KIFNEMKLCN------ 239
            PDV +Y++L+NG  K  N+  A     EM+  G +        +I  E+ L +      
Sbjct: 445 FPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQ 504

Query: 240 ---------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
                    + P+T T N+ IDGLCK G++ +   L   +     +     +  LI   C
Sbjct: 505 LREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHC 564

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           + G+   A +L N +    L   VV Y IL+H   + G +         M + G   +  
Sbjct: 565 ERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEI 624

Query: 351 TFNTLM 356
           T+N L+
Sbjct: 625 TYNVLI 630



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 152/343 (44%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+NSL+  +C  GN+++A  L+  +   G  P V T +TLI G  R G++    +L +E
Sbjct: 379 ITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEE 438

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCK 139
           MV   G F     P+V  Y  L++G  K R +   ++ F EM  KG+       NT +C 
Sbjct: 439 MVE-QGCF-----PDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICA 492

Query: 140 KTKLVE---ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           +  L     A +L E+MM +G+ P   TY  +++G C  G +  A  L   M   G  PD
Sbjct: 493 ELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPD 552

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LI+ +C+   + EA            +K+ N M    + P   T  I +   C+
Sbjct: 553 CITYTCLIHAHCERGLLREA------------RKLLNGMVSDGLQPSVVTYTILVHTCCR 600

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G++      F  +     E     +N LI   C  G   +A   F+++  + L  +   
Sbjct: 601 RGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYT 660

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           Y +LI    +EG       L   M +NG   D  T N L   F
Sbjct: 661 YTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF 703



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 133/332 (40%), Gaps = 88/332 (26%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL   G   R    P   +T+N+LI G+C  G++ +A +L ++M   GC P+V T   L+
Sbjct: 397 ALWLLGDLRRAGLAP-TVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILM 455

Query: 67  TGLRRTGNMNLTLKLHQEMVN-GMGD-----------------------------FGGIY 96
            G R+  N+ +  +   EM++ G+                                 GIY
Sbjct: 456 NGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIY 515

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANR 148
            P+   Y  +IDGLCK   +   K L  +M   G+  + +         C++  L EA +
Sbjct: 516 -PDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARK 574

Query: 149 LLELMMQRGLNPVIFTYT----------------------------P-------LLNGYC 173
           LL  M+  GL P + TYT                            P       L++  C
Sbjct: 575 LLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALC 634

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
           + G+  +A   F  M  +G  P+ ++Y++LI+G C+  N  +A+ +  EM  NG      
Sbjct: 635 MTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNG------ 688

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
                 + P+  T N    G    GH+   +E
Sbjct: 689 ------IPPDYCTHNALFKGF-DEGHMYHAIE 713



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 128/311 (41%), Gaps = 29/311 (9%)

Query: 54  GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
           G  P+V  C+ ++  LR     +    ++ EM+          +P +  Y +L+D   K+
Sbjct: 197 GVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLR------VEPTIVTYNTLLDSFLKE 250

Query: 114 RLVDQTKDLFMEMKDKG-------INAN---TLLCKKTKLVEANRLLELMMQRGLNPVIF 163
              D+   L  EM+ +G       +  N   + L ++  L  A +L++  M+       F
Sbjct: 251 GRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVD-SMRLSKKASSF 309

Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
           TY PL+      G V  A AL   M  +G MP V +Y+ +I+G  K    E A       
Sbjct: 310 TYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAA------- 362

Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                +  F EM+   ++P+  T N  ++  CK G++ E + L   L  +     V  +N
Sbjct: 363 -----QVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYN 417

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           +LI G C+ G    A  L  ++  +    DV  Y IL++   K   +         M   
Sbjct: 418 TLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSK 477

Query: 344 GCALDVDTFNT 354
           G   D   +NT
Sbjct: 478 GLQPDCFAYNT 488



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 15/209 (7%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK--GFMPDVFSYSVLINGYCKN 210
           M+Q  + P I TY  LL+ +   G+ + A  L   M  +  GF  +  +++V+I+   + 
Sbjct: 228 MLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLARE 287

Query: 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
            ++E A+            K+ + M+L      +FT N  I  L + G V +   L   +
Sbjct: 288 GHLENAV------------KLVDSMRLSKKA-SSFTYNPLITALLERGFVRKAEALQMEM 334

Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           E       V  +N++I G  K    E A   F ++    L+ DV+ YN L++   K G +
Sbjct: 335 ENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNL 394

Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISF 359
           K+  +LL  +   G A  V T+NTL+  +
Sbjct: 395 KEALWLLGDLRRAGLAPTVLTYNTLIDGY 423



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 7/139 (5%)

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE--IFNSLI 286
           + ++ EM    V P   T N  +D   K G   E   L   +E       +    FN +I
Sbjct: 222 RAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVI 281

Query: 287 RGCCKFGIFEIASELFN--KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
               + G  E A +L +  +LS K   A    YN LI AL + G ++K   L + ME  G
Sbjct: 282 SFLAREGHLENAVKLVDSMRLSKK---ASSFTYNPLITALLERGFVRKAEALQMEMENEG 338

Query: 345 CALDVDTFNTLMISFLQKE 363
               V T+N ++   L+ E
Sbjct: 339 IMPTVVTYNAIIHGLLKCE 357


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 145/321 (45%), Gaps = 26/321 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N ++ G C EG + DA + +K + + GC PN  + + ++ GL          KL  E
Sbjct: 227 ITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAE 286

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M          Y PNV  +  LI  LC+  LV+   ++  ++   G   N+L        
Sbjct: 287 MSQKG------YPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHA 340

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+  A   +ELM+ RG  P I +Y  LL   C  G+V+ A+ L   +  KG  P 
Sbjct: 341 FCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPV 400

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + SY+ +I+G  K    +EA+ +  EM+  G +            P+  T +    GLC+
Sbjct: 401 LISYNTVIDGLTKAGKTKEALELLNEMVTKGLQ------------PDIITYSTISSGLCR 448

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E +  F  ++         ++N+++ G CK      A +LF  +     + +   
Sbjct: 449 EDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNEST 508

Query: 317 YNILIHALGKEGQIKKENYLL 337
           Y ILI  L  EG +K+   LL
Sbjct: 509 YTILIEGLTYEGLVKEARELL 529



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 157/350 (44%), Gaps = 28/350 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  T+N+LI+G C  G   +A  ++  M   GC P+V T   L+    +       +KL 
Sbjct: 155 DSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLL 214

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM   G         P++  Y  +++G+C++  VD   +    +   G   NT+     
Sbjct: 215 DEMRAKGCA-------PDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIV 267

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC   +  +A +L+  M Q+G  P + T+  L++  C  G V  A+ + D + + G 
Sbjct: 268 LKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGC 327

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+  SY+ +++ +CK   ++ AM     M+  G              P+  + N  +  
Sbjct: 328 TPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRG------------CYPDIVSYNTLLTA 375

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LC+ G V   +EL   L+   C   +  +N++I G  K G  + A EL N++  K L  D
Sbjct: 376 LCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPD 435

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           ++ Y+ +   L +E +I++       +++ G   +   +N +++   ++ 
Sbjct: 436 IITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRR 485



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 164/365 (44%), Gaps = 28/365 (7%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL+     +RR   P + VT+  L++  C     + A +L+ +M   GC P++ T + ++
Sbjct: 175 ALVVLDDMLRRGCVP-DVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVV 233

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            G+ + G ++  +    E +  +   G   +PN   Y  ++ GLC     +  + L  EM
Sbjct: 234 NGICQEGRVDDAI----EFLKSLPSHG--CEPNTVSYNIVLKGLCTAERWEDAEKLMAEM 287

Query: 127 KDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
             KG   N        + LC++  +  A  +L+ + + G  P   +Y P+L+ +C   K+
Sbjct: 288 SQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKM 347

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
           + A+A  + M  +G  PD+ SY+ L+   C+   V+ A+            ++ +++K  
Sbjct: 348 DRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAV------------ELLHQLKDK 395

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P   + N  IDGL K G   E +EL   +     +  +  ++++  G C+    E A
Sbjct: 396 GCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEA 455

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
              F K+    +  + V YN ++  L K  +      L + M  NGC  +  T+ T++I 
Sbjct: 456 IRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTY-TILIE 514

Query: 359 FLQKE 363
            L  E
Sbjct: 515 GLTYE 519



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 149/336 (44%), Gaps = 34/336 (10%)

Query: 29  SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
           +LIK  C  G   +A +++       C P+V   + ++ G   TG ++   +L  +M   
Sbjct: 99  ALIKKLCASGRTAEARRVLA-----ACEPDVMAYNAMVAGYCVTGQLDAARRLVADMP-- 151

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----INANTLL----CKK 140
                   +P+ + Y +LI GLC          +  +M  +G    +   T+L    CK+
Sbjct: 152 -------MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKR 204

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
           +   +A +LL+ M  +G  P I TY  ++NG C  G+V+ AI    S+   G  P+  SY
Sbjct: 205 SGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSY 264

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           ++++ G C     E+A  +  EM   G+             P   T N+ I  LC+ G V
Sbjct: 265 NIVLKGLCTAERWEDAEKLMAEMSQKGYP------------PNVVTFNMLISFLCRRGLV 312

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
              ME+   +    C      +N ++   CK    + A      +  +    D+V+YN L
Sbjct: 313 EPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTL 372

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + AL + G++     LL  +++ GC   + ++NT++
Sbjct: 373 LTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVI 408



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 146/336 (43%), Gaps = 53/336 (15%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N  ++G    G++ +A +LV+ M+          C  LI  L  +G      ++      
Sbjct: 63  NDRLRGLVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASGRTAEARRVLAAC-- 120

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEAN 147
                    +P+V  Y +++ G C    +D  + L  +M                     
Sbjct: 121 ---------EPDVMAYNAMVAGYCVTGQLDAARRLVADMP-------------------- 151

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
                     + P  +TY  L+ G C  G+   A+ + D M R+G +PDV +Y++L+   
Sbjct: 152 ----------MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEAT 201

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK    ++AM            K+ +EM+     P+  T N+ ++G+C+ G V + +E  
Sbjct: 202 CKRSGYKQAM------------KLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFL 249

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
            +L    CE     +N +++G C    +E A +L  ++S K    +VV +N+LI  L + 
Sbjct: 250 KSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRR 309

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           G ++    +L  + + GC  +  ++N ++ +F +++
Sbjct: 310 GLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQK 345



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 154/342 (45%), Gaps = 35/342 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL---RRTGNMNLTLKL 81
           + +N+++ G+C+ G +  A +LV  M      P+  T +TLI GL    RTGN  + L  
Sbjct: 125 MAYNAMVAGYCVTGQLDAARRLVADMPM---EPDSYTYNTLIRGLCGRGRTGNALVVL-- 179

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
                + M   G +  P+V  Y  L++  CK     Q   L  EM+ KG   + +     
Sbjct: 180 -----DDMLRRGCV--PDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVV 232

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              +C++ ++ +A   L+ +   G  P   +Y  +L G C   +   A  L   M++KG+
Sbjct: 233 VNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGY 292

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V ++++LI+  C+   VE AM V             +++      P + + N  +  
Sbjct: 293 PPNVVTFNMLISFLCRRGLVEPAMEV------------LDQIPKYGCTPNSLSYNPILHA 340

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            CK   +   M     +    C   +  +N+L+   C+ G  + A EL ++L  K     
Sbjct: 341 FCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPV 400

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           +++YN +I  L K G+ K+   LL  M   G   D+ T++T+
Sbjct: 401 LISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTI 442



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 14/213 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++N ++  FC +  +  A   V+ M + GC P++ + +TL+T L R G ++  +   
Sbjct: 330 NSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAV--- 386

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            E+++ + D G    P +  Y ++IDGL K     +  +L  EM  KG+  + +      
Sbjct: 387 -ELLHQLKDKG--CTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTIS 443

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ ++ EA R    +   G+ P    Y  +L G C   + + AI LF  M   G M
Sbjct: 444 SGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCM 503

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           P+  +Y++LI G      V+EA  +  E+   G
Sbjct: 504 PNESTYTILIEGLTYEGLVKEARELLGELCSRG 536



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T++++  G C E  I +A +   K+   G RPN    + ++ GL +    +  + L   
Sbjct: 437 ITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIY 496

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139
           M+ NG         PN   Y  LI+GL  + LV + ++L  E+  +G+ +  L+ K
Sbjct: 497 MISNGC-------MPNESTYTILIEGLTYEGLVKEARELLGELCSRGVVSKGLINK 545


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 162/381 (42%), Gaps = 38/381 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F     R   P N +T+N++I G    G++    +L  +M   G +PN  T + L+
Sbjct: 34  AVEVFDEMTERAVLP-NHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLL 92

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +GL R G M  T  L  EM +          P+ F Y  L DGL ++        LF + 
Sbjct: 93  SGLCRAGRMGETSALLDEMASQK------MVPDGFTYSILFDGLSRNGDSKAMLSLFGKY 146

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G+             LCK  K+  A  +L+ ++  GL P    Y  L+NGYC  G++
Sbjct: 147 LKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL 206

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------- 230
             A + F  M  +   PD  +Y+ LING CK   +  A ++  EM  NG           
Sbjct: 207 EGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 266

Query: 231 ---------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                          + +EM+   + P   +    ++  CKNG + E + +   +   + 
Sbjct: 267 IDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDV 326

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
               +++N++I    + G  + A  L  K+    +   +V YN+LI  L  + QI +   
Sbjct: 327 LPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEE 386

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           ++ S+  +    D  ++NTL+
Sbjct: 387 IINSLSNHRLIPDAVSYNTLI 407



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 137/274 (50%), Gaps = 20/274 (7%)

Query: 94  GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVE 145
           G   PN F Y  +I G+ +        ++F EM ++      I  NT++    K   L  
Sbjct: 9   GAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEA 68

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
             RL + M+  GL P   TY  LL+G C  G++    AL D MA +  +PD F+YS+L +
Sbjct: 69  GFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 128

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G  +N + +  +++  + + NG            V    +TC+I ++GLCK+G V    E
Sbjct: 129 GLSRNGDSKAMLSLFGKYLKNG------------VTIGDYTCSILLNGLCKDGKVSIAEE 176

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +  +L  +       I+N+LI G C+ G  E A   F ++  +++  D + YN LI+ L 
Sbjct: 177 VLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLC 236

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           K  +I     LL+ M++NG    V+TFNTL+ ++
Sbjct: 237 KAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 270



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 166/362 (45%), Gaps = 32/362 (8%)

Query: 14  FIRRCYR----PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
            +RR  R    P N  ++N +I G    G   DA ++  +M      PN  T +T+I G 
Sbjct: 1   MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 60

Query: 70  RRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
            + G++    +L  +MV +G+       KPN   Y  L+ GLC+   + +T  L  EM  
Sbjct: 61  IKGGDLEAGFRLRDQMVCHGL-------KPNAITYNVLLSGLCRAGRMGETSALLDEMAS 113

Query: 129 K-----GINANTLLCKKTKLVEANRLLELM---MQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +     G   + L    ++  ++  +L L    ++ G+    +T + LLNG C  GKV++
Sbjct: 114 QKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSI 173

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A  +  S+   G +P    Y+ LINGYC+   +E A +             F +MK  ++
Sbjct: 174 AEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFST------------FGQMKSRHI 221

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T N  I+GLCK   +    +L   ++ +     VE FN+LI    + G  E    
Sbjct: 222 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 281

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           + +++    L  +VV+Y  +++A  K G+I +   +L  M       +   +N ++ +++
Sbjct: 282 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 341

Query: 361 QK 362
           + 
Sbjct: 342 EH 343



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 161/359 (44%), Gaps = 39/359 (10%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           L  FG +++     + D T + L+ G C +G +  A ++++ +   G  P     +TLI 
Sbjct: 140 LSLFGKYLKNGVT-IGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLIN 198

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           G  +TG +        +M +         KP+   Y +LI+GLCK   +   +DL MEM+
Sbjct: 199 GYCQTGELEGAFSTFGQMKSRH------IKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 128 DKGINA-----NTLLCKKTKLVEANR---LLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
           D G+N      NTL+    +  +  +   +L  M + GL P + +Y  ++N +C  GK+ 
Sbjct: 253 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 312

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------- 228
            A+A+ D M  K  +P+   Y+ +I+ Y ++   ++A  +  +M  NG            
Sbjct: 313 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 372

Query: 229 ------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
                       ++I N +    ++P+  + N  I   C  G++ + ++L   +     +
Sbjct: 373 KGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIK 432

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG-QIKKEN 334
             V  ++ LI G    G       L+ K+   N+V     +NI++ A  K G +IK E+
Sbjct: 433 STVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAED 491



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 141/313 (45%), Gaps = 30/313 (9%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T ++ GA   FG    R  +P + +T+N+LI G C    I +A  L+ +M   G  P V 
Sbjct: 203 TGELEGAFSTFGQMKSRHIKP-DHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVE 261

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           T +TLI    RTG +     +  EM  NG+       KPNV  YGS+++  CK+  + + 
Sbjct: 262 TFNTLIDAYGRTGQLEKCFIVLSEMQENGL-------KPNVVSYGSIVNAFCKNGKIPEA 314

Query: 120 KDLFMEM--KDKGINANTLLCKKTKLVEANR------LLELMMQRGLNPVIFTYTPLLNG 171
             +  +M  KD   NA          VE         L+E M   G++P I TY  L+ G
Sbjct: 315 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 374

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
            C   +++ A  + +S++    +PD  SY+ LI+  C   N+++A+++ + M   G K  
Sbjct: 375 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 434

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                         T +  I GL   G + E+  L+  +  +N      I N ++    K
Sbjct: 435 VR------------TYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSK 482

Query: 292 FGIFEIASELFNK 304
           +G  EI +E   K
Sbjct: 483 YG-NEIKAEDLRK 494



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 16/211 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++ S++  FC  G I +A  ++  M      PN    + +I      G  +    L 
Sbjct: 294 NVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILV 353

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-----GINANTL 136
           ++M  NG+        P++  Y  LI GLC    + + +++   + +       ++ NTL
Sbjct: 354 EKMKSNGI-------SPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTL 406

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   C +  + +A  L + M + G+   + TY  L++G    G++N    L+  M +   
Sbjct: 407 ISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 466

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           +P    +++++  Y K  N  +A ++ +EM+
Sbjct: 467 VPSNAIHNIMVEAYSKYGNEIKAEDLRKEML 497


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 175/391 (44%), Gaps = 58/391 (14%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM-- 75
           CY   + + FNSL+  +C  G+   A +L+KKM   G +P     + LI G+  T ++  
Sbjct: 7   CYP--SPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPS 64

Query: 76  ----NLTLKLHQEMVNG------------------MGDFGGIYK-----------PNVFC 102
                L  + + EM+                    +G F   Y            P+   
Sbjct: 65  MEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSST 124

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL---CKKTKLVEANRLLELMM 154
           Y  +I  LC    V++   LF EMK  GI  +     TLL   CK   + +A    + M 
Sbjct: 125 YSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQ 184

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           Q G  P + TYT L++ Y    K++ A  +F+ M   G +P++ +Y+ LI+G+CK    E
Sbjct: 185 QDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETE 244

Query: 215 EAMNVSREMILNG---------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           +A  +   M  +          F+ + +E+K  NVV    T    +DGLCK   V E  +
Sbjct: 245 KACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVV----TYGALVDGLCKAHKVKEARD 300

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L  T+ +  CE    I+++LI G CK G  + A E+F K+       +V  Y+ LI  L 
Sbjct: 301 LLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLF 360

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           K+ ++     +L  M EN CA +V  +  ++
Sbjct: 361 KDKRLDLALKVLTKMLENSCAPNVVIYTEMV 391



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 160/364 (43%), Gaps = 45/364 (12%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN V   +  +  C  G    A  ++++M + G  P+ +T   +I  L     +    +L
Sbjct: 85  LNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQL 144

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            QEM  NG+        P+V+ Y +L+D  CK  L++Q ++ F EM+  G   N +    
Sbjct: 145 FQEMKRNGI-------TPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTA 197

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 K  KL  AN + E+M+  G  P I TYT L++G+C  G+   A  ++  M    
Sbjct: 198 LIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDK 257

Query: 193 F-----------------MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
                              P+V +Y  L++G CK   V+EA ++   M L G +      
Sbjct: 258 VDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCE------ 311

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                 P     +  IDG CK G + E  E+F  +    C   V  ++SLI    K    
Sbjct: 312 ------PNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRL 365

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           ++A ++  K+   +   +VV Y  ++  L K G+  +   L+L MEE GC  +V T+  +
Sbjct: 366 DLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAM 425

Query: 356 MISF 359
           +  F
Sbjct: 426 IDGF 429



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 160/359 (44%), Gaps = 46/359 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+ G C    +++A  L++ M+  GC PN    D LI G  + G ++      
Sbjct: 278 NVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEA---- 333

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QE+   M   G    PNV+ Y SLID L KD+ +D    +  +M +     N +      
Sbjct: 334 QEVFTKM--LGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMV 391

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  K  EA RL+ +M ++G  P + TYT +++G+   G+V+  + L   M  KG  
Sbjct: 392 DGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCA 451

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIF-------N 233
           P+  +Y VLIN  C    +++A  +  EM              ++ GF   F        
Sbjct: 452 PNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLA 511

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHV---LEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           E+     VP      + ID   K G +   LE+ E   +   +    +V +  SL   C 
Sbjct: 512 ELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQNTYVSLIESLTLAC- 570

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
                + A +L++ ++ +  V ++     LI  L + G+ ++     L + ++ C +D+
Sbjct: 571 ---KVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEA----LQLSDSICQMDI 622



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 29/234 (12%)

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
           +M+  G  P    +  L++ YC  G    A  L   M   G+ P    Y++LI G C   
Sbjct: 1   MMITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTE 60

Query: 212 NV---------EEAMNVSREM--ILN---------------GFKKIFN---EMKLCNVVP 242
           ++         E A N   EM  +LN                F+K +N   EM     +P
Sbjct: 61  DLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIP 120

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           ++ T +  I  LC    V +  +LF  ++ +     V  + +L+   CK G+ E A   F
Sbjct: 121 DSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWF 180

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +++       +VV Y  LIHA  K  ++ + N +   M  NGC  ++ T+  L+
Sbjct: 181 DEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALI 234


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 155/334 (46%), Gaps = 45/334 (13%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C  P +   FN L+  FC EG IR A  +   +  +G RP+V + +TL+ G  + G+++ 
Sbjct: 130 CGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDE 189

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137
             +L   M        G++ P+V+ Y  LI+GLCK+  +D   +LF EM B G+  N + 
Sbjct: 190 GFRLKSVM-----QASGVH-PDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXV- 242

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
                                     T+T L++G+C  G+V++A+ ++  M  +  +PD+
Sbjct: 243 --------------------------TFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDL 276

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LI G CK  ++++A ++  EM + G K            P+  T    IDG CK 
Sbjct: 277 ITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK------------PDKITYTTLIDGXCKE 324

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G +    E    +   N       + +LI G C+ G    A ++  ++    L  ++  Y
Sbjct: 325 GDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            ++I+   K+G +   + LL  M+  G   +V T
Sbjct: 385 TMIINEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 155/338 (45%), Gaps = 26/338 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  +I  L +     L    ++E +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L E  RL  +M   G++P ++TY+ L+NG C   K++ A  LFD M   G +P+  
Sbjct: 183 KIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + R+M+              +++P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYRQMLSQ------------SLLPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D VAY 
Sbjct: 291 DLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            LI  L +EG+      +L  M   G   ++ T+  ++
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMII 388


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 162/347 (46%), Gaps = 29/347 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMAT--FGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           T+N+L+  FC  G +  A  L+K M     GC PN  T + +I GL R G +    +L  
Sbjct: 231 TYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVD 290

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLLC 138
            M           K + F Y  LI GL     V++   L +EM+++GI       NTL+ 
Sbjct: 291 IMRLSK-------KASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLID 343

Query: 139 K--KTKLVEANRL-LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
              KT   EA ++  + M  +GL P + TY  L+NGYC  G +  A+ LF  + R G  P
Sbjct: 344 GLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGP 403

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
            V +Y++LI+GYC+  ++E            G +++  EM   + +P+  T  I ++G C
Sbjct: 404 TVLTYNILIDGYCRLGDLE------------GARRLKEEMTEEDCLPDVCTYTILMNGSC 451

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
              ++  V   F  +     E     +N+ I      G    A +L  ++  + + +D V
Sbjct: 452 MVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTV 511

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            YN+LI  L K G +K    L + M  +G  LD  T+  L+ +  ++
Sbjct: 512 TYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCER 558



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 148/351 (42%), Gaps = 28/351 (7%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I R  +  +  T+N LI G      +  A  L+ +M   G  P V T +TLI GL +TGN
Sbjct: 291 IMRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGN 350

Query: 75  MNLT-LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
                +K  +    G+        P++  Y SLI+G CK   + Q   LF ++K  G+  
Sbjct: 351 AEAAQVKFDEMRAKGL-------LPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGP 403

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
             L         C+   L  A RL E M +    P + TYT L+NG C+V  + +    F
Sbjct: 404 TVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFF 463

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           D M  KG  PD F+Y+  I+       +  A  +  EM+L G               +T 
Sbjct: 464 DEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISS------------DTV 511

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T N+ IDGLCK G + +   L+  +      L    +  LI   C+ G    A  +F+ +
Sbjct: 512 TYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGM 571

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               L   VV Y I IH   + G +         M E G   +  T+N LM
Sbjct: 572 VASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLM 622



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 145/353 (41%), Gaps = 62/353 (17%)

Query: 48  KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107
           ++MA  G  P V  C+ ++  LR     +    ++ +M+  +G      +P++F Y +L+
Sbjct: 183 QEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQ-LG-----VEPSIFTYNTLL 236

Query: 108 DGLCKDRLVDQTKDLF--MEMKDKGINANTL--------LCKKTKLVEANRLLELMM--- 154
           D  CK   +DQ   L   ME +  G   N +        L +K +L +A +L+++M    
Sbjct: 237 DSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSK 296

Query: 155 -------------------------------QRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
                                            G+ P + TY  L++G    G    A  
Sbjct: 297 KASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQV 356

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
            FD M  KG +PD+ +Y+ LINGYCK  N+++A+             +F ++K   + P 
Sbjct: 357 KFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALC------------LFGDLKRAGLGPT 404

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T NI IDG C+ G +     L   +   +C   V  +  L+ G C      +    F+
Sbjct: 405 VLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFD 464

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++  K L  D  AYN  I A    G I     L   M   G + D  T+N L+
Sbjct: 465 EMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLI 517



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 128/298 (42%), Gaps = 50/298 (16%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  FG   R    P   +T+N LI G+C  G++  A +L ++M    C P+V T   L+
Sbjct: 389 ALCLFGDLKRAGLGP-TVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILM 447

Query: 67  TGLRRTGNMNLTLKLHQEMVN------------------GMGDFGGIYK----------- 97
            G     N+ +      EM++                   +G     ++           
Sbjct: 448 NGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGIS 507

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRL 149
            +   Y  LIDGLCK   +     L+M+M   G+  + +         C++ +L+EA  +
Sbjct: 508 SDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNI 567

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            + M+  GL+P + TYT  ++ YC  G + +A   F  M  +G  P+  +Y+VL++  C+
Sbjct: 568 FDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCR 627

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
               E A     EM+  G            +VP  +T  + IDG CK G+ +  + L+
Sbjct: 628 MGRTESAYQHFHEMLERG------------LVPNKYTYTLLIDGSCKEGNWVHAIRLY 673



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 14/193 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N LI G C  G+++DA  L  KM T G R +  T   LI      G     L   
Sbjct: 509 DTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGR----LIEA 564

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           + + +GM   G    P+V  Y   I   C+   +      F +M ++G+  N +      
Sbjct: 565 KNIFDGMVASG--LSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLM 622

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +   A +    M++RGL P  +TYT L++G C  G    AI L+  M +KG  
Sbjct: 623 HALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIH 682

Query: 195 PDVFSYSVLINGY 207
           PD  +++ L  G+
Sbjct: 683 PDHCTHNALFKGF 695


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 155/335 (46%), Gaps = 45/335 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+  F  EG IR A  +   +  +  RP+V + +TL+ G  + G+++
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L     N M   G   +P+V+ Y  LI+GLCK+                       
Sbjct: 189 EGFRLK----NAMQASG--VQPDVYTYSVLINGLCKE----------------------- 219

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
               +K+ +AN L + M+  GL P   T+T L++G+C  G+V++A+ ++  M  +   PD
Sbjct: 220 ----SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CK  ++++A ++  EM + G K            P+  T    IDG CK
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK------------PDKITYTTLIDGNCK 323

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           Y ++I+   K+G +   + LL  M+ +GC   V T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 155/341 (45%), Gaps = 20/341 (5%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L    ++E +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTLL---CKKT 141
              G    +Y  N+  +  + +G  + RL     D      ++   ++ NTL+    K  
Sbjct: 129 E-CGYPASLYFFNILMHSFVKEG--EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLG 185

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
            L E  RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M   G +P+  +++
Sbjct: 186 DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFT 245

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G + 
Sbjct: 246 TLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKGDLK 293

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D VAY  LI
Sbjct: 294 QAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALI 353

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             L +EG+      +L  M   G   ++ T+  ++  F +K
Sbjct: 354 SGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 13/218 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + + +  L P + ++  L+NGY  +G ++    L ++M   G  PDV++YSVLIN
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G CK   +++A  +  EM+ NG            +VP   T    IDG CKNG V   ME
Sbjct: 215 GLCKESKMDDANELFDEMLDNG------------LVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           ++  +   +    +  +N+LI G CK G  + A +L +++S K L  D + Y  LI    
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNC 322

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           KEG ++        M +    LD D   T +IS L +E
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLD-DVAYTALISGLCQE 359


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 157/361 (43%), Gaps = 42/361 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+  LI  FC  G I  A     +M + GC PNV T   L+    ++  +     +   M
Sbjct: 489 TYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRM 548

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT---------------KDLFMEMKDKG 130
           V      G    PN   Y +LIDGLCK   + +                 D + E KD  
Sbjct: 549 V------GDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTD 602

Query: 131 -INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
            I+ N +        LCK  K+ +A+ LL+ M+  G  P    Y  L++G+C VG+++ A
Sbjct: 603 TISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSA 662

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             +F  M + G++P V +Y+ LI+   K+  ++ AM V  +M+ +           CN  
Sbjct: 663 QEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS----------CN-- 710

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P   T    +DGLCK G   + + L   +E   C   V  + +LI G  K G  +   EL
Sbjct: 711 PNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLEL 770

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           F ++  K    + V Y ILI+     G +   + LL  M++      +  + T +  F +
Sbjct: 771 FMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSK 830

Query: 362 K 362
           +
Sbjct: 831 R 831



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 149/334 (44%), Gaps = 38/334 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+ G C    + DA  L+  M   GC PN    D L+ G  + G ++      
Sbjct: 607 NVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSA---- 662

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QE+   M   G  Y P+V  Y SLID + KD  +D    +  +M     N N +      
Sbjct: 663 QEVFLRMTKCG--YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMV 720

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  +  +A  LL LM ++G +P + TYT L++G    GKV+  + LF  M  KG  
Sbjct: 721 DGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCA 780

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIF-------N 233
           P+  +Y +LIN  C    +++A  +  EM               + GF K F        
Sbjct: 781 PNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLE 840

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT-LEISNCELFV--EIFNSLIRGCC 290
           EM+  +  P      + ID   K G +   +EL    +E+S+       ++  SLI+  C
Sbjct: 841 EMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALC 900

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                E A  L++++  + +V D+ A+  L+  L
Sbjct: 901 LSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGL 934



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 160/383 (41%), Gaps = 59/383 (15%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT---GLRRTGN---MNLTLK 80
           FNSL+  +C   +   A +L  +M T GC P     +  I    G     N   ++L  K
Sbjct: 344 FNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEK 403

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------ 134
           +++EM+        I   N          LC     ++   +  EM  KG   +      
Sbjct: 404 VYEEMLVASCVLNKINTAN------FARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTK 457

Query: 135 --TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             T LC+  ++ +A  L + M + G+NP ++TYT L++ +C  G +  A + FD M   G
Sbjct: 458 VITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAG 517

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGFKKIFNEMKLC 238
             P+V +Y+ L++ Y K+  + +A ++   M+              ++G  K     K C
Sbjct: 518 CSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKAC 577

Query: 239 NVV-------------------------PETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
            V                          P   T    ++GLCK   V +  +L   +  +
Sbjct: 578 EVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAA 637

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
            CE    ++++L+ G CK G  + A E+F +++    +  V  Y  LI  + K+G++   
Sbjct: 638 GCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLA 697

Query: 334 NYLLLSMEENGCALDVDTFNTLM 356
             +L  M ++ C  +V T+  ++
Sbjct: 698 MKVLSQMLKDSCNPNVVTYTAMV 720



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 148/352 (42%), Gaps = 45/352 (12%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            N L++  C++G   +A + + ++  FG RP+  T + L+  L   G + +  ++ +EM 
Sbjct: 172 LNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEM- 230

Query: 87  NGMGDFGGIYKPNVFC-----YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK- 140
                       + FC      GS    LCK+       DL +E +D     +T+LC + 
Sbjct: 231 ----------SASGFCMDRSTVGSFAQALCKEGRWGDALDL-LERED--FKLDTVLCTQM 277

Query: 141 -TKLVEAN------RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
            + L+EA+        L  M      P + TY  LL G+    ++     + + M  +G 
Sbjct: 278 ISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGC 337

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P    ++ L++ YC   +   A             K+FN M  C   P     NIFI  
Sbjct: 338 NPSPSLFNSLVHTYCNAEDYAYAY------------KLFNRMNTCGCPPGYVVYNIFIGS 385

Query: 254 LC-----KNGHVLEVME-LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           +C      N  +L++ E ++  + +++C L      +  R  C  G FE A ++  ++  
Sbjct: 386 ICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMR 445

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           K  V D   Y  +I  L +  ++ K   L   M++ G   DV T+  L+ SF
Sbjct: 446 KGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSF 497



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 90/242 (37%), Gaps = 52/242 (21%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +++ G C  G    A  L+  M   GC PNV T   LI GL + G ++  L+L 
Sbjct: 712 NVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELF 771

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA------NT 135
            +M   G         PN   Y  LI+  C   L+D    L  EMK             T
Sbjct: 772 MQMKTKGCA-------PNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTT 824

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTY------------------------------ 165
           +     + + +  LLE M      P+   Y                              
Sbjct: 825 VQGFSKRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSL 884

Query: 166 --------TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
                   T L+   CL  +V  A+AL+  M R+G +PD+ ++  L+ G  +     EA+
Sbjct: 885 NMASKDMHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEAL 944

Query: 218 NV 219
            +
Sbjct: 945 QL 946



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 15/191 (7%)

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           CL G    A+     +   G+ P   +Y+ L+        VE A  V +EM  +GF    
Sbjct: 180 CLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGF---- 235

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                     +  T   F   LCK G   + ++L   LE  + +L   +   +I G  + 
Sbjct: 236 --------CMDRSTVGSFAQALCKEGRWGDALDL---LEREDFKLDTVLCTQMISGLMEA 284

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
            +F  A    +++ C + + +VV Y  L+    K+ Q+     ++  M   GC      F
Sbjct: 285 SLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLF 344

Query: 353 NTLMISFLQKE 363
           N+L+ ++   E
Sbjct: 345 NSLVHTYCNAE 355


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 160/351 (45%), Gaps = 54/351 (15%)

Query: 3   KVLGALMAFGSF---------IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF 53
           KVL  LM F  F         +  C  P +   FN L++ FC EG +R A  +   +  +
Sbjct: 106 KVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKW 165

Query: 54  GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
           G RP+V + +TLI G  + G+++   +L   M           +P+V+ Y  LI+GLCK+
Sbjct: 166 GLRPSVVSFNTLINGYIKLGDLDEGFRLKSAM------HASGAQPDVYTYSILINGLCKE 219

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
             +D+  +LF EM D G+  N +                           T+T L++G+C
Sbjct: 220 GKLDEANELFNEMLDNGLVPNGV---------------------------TFTTLIHGHC 252

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
              KV++A+ ++  M  +G  PD+ +Y+ LI G CK   +++  ++  EMI+NG K    
Sbjct: 253 KNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLK---- 308

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+  +    IDG CK G +   +EL   +   +  L    + +LI   C+ G
Sbjct: 309 --------PDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREG 360

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
               A ++  ++    L  D   Y ++I+   K+   K  + LL  M+ +G
Sbjct: 361 RASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDG 411



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 158/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ L+  +   G +RDA Q  +       R    TC  ++  L       L    ++E++
Sbjct: 69  FSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L E  RL   M   G  P ++TY+ L+NG C  GK++ A  LF+ M   G +P+  
Sbjct: 183 KLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+  G              P+  T N  I GLCK G
Sbjct: 243 TFTTLIHGHCKNEKVDLAMEIYKQMLSQGLS------------PDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +V +L   + ++  +     + +LI G CK G  EIA EL NK+  +++  D VAY 
Sbjct: 291 ELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 351 ALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKK 394



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 16/186 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C    +  A ++ K+M + G  P++ T +TLI GL + G +     L 
Sbjct: 240 NGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLI 299

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM+ NG+       KP+   Y +LIDG CK+  ++   +L  +M  + I  + +     
Sbjct: 300 DEMIMNGL-------KPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTAL 352

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ +  +A ++L  M+  GL P   TYT ++N +C       A  L   M R G 
Sbjct: 353 ISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGP 412

Query: 194 MPDVFS 199
           +P V +
Sbjct: 413 LPGVVT 418


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 166/360 (46%), Gaps = 39/360 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N + +  ++ G C      D  +L+  M   GC P+  TC+ L+ G  + G ++    
Sbjct: 233 PPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFA 292

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--- 137
           L Q +    G   GI       Y SLIDGL + +  D+ ++   +M   GI  + +L   
Sbjct: 293 LLQ-LFEKEGYVLGIKG-----YSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTI 346

Query: 138 -----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                C+   +  A  +L  M QRGL+P  + Y  L+ G+C VG ++ A +L   +++  
Sbjct: 347 LIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKND 406

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P   +Y++LI G C+N  ++EA            ++IFN+M+     P   T N  ID
Sbjct: 407 CFPTSCTYTILICGMCRNGLLDEA------------RQIFNQMENLGCSPSIMTFNALID 454

Query: 253 GLCKNGHVLEVMELFPTLEI-SNCELFVEI------------FNSLIRGCCKFGIFEIAS 299
           GLCK G + E   LF  +EI  N  LF+ +              +++   C+ G+   A 
Sbjct: 455 GLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAY 514

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +L  +L+   +V D++ YN+LI+   K   I     L   ++  G + D  T+ TL+  F
Sbjct: 515 KLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGF 574



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 177/413 (42%), Gaps = 85/413 (20%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TF+ LI  +   G    A +   KM  FGC+P+V T ++++  + +     L L ++ +M
Sbjct: 133 TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQM 192

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           +         Y PN   +  L++GLCK+   D    +F EM  KGI  NT+        L
Sbjct: 193 LKLN------YNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGL 246

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM--- 194
           C+  +  + +RLL  M   G  P   T   LL+G+C +G+++ A AL     ++G++   
Sbjct: 247 CQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGI 306

Query: 195 --------------------------------PDVFSYSVLINGYCKNFNVEEAMNVSRE 222
                                           PDV  Y++LI G+C+   V+ A+N+  +
Sbjct: 307 KGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLND 366

Query: 223 M--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           M              ++ GF         + +  E+   +  P + T  I I G+C+NG 
Sbjct: 367 MTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGL 426

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC------------ 307
           + E  ++F  +E   C   +  FN+LI G CK G  E A  LF K+              
Sbjct: 427 LDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQ 486

Query: 308 -KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             + V D  +   ++  L + G I K   LL+ + ++G   D+ T+N L+  F
Sbjct: 487 GADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGF 539



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 159/359 (44%), Gaps = 56/359 (15%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+LIKGFC  G +  A  L  +++   C P   T   LI G+ R G     L   +++ 
Sbjct: 379 YNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNG----LLDEARQIF 434

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK---------------DKGI 131
           N M + G    P++  + +LIDGLCK   +++ + LF +M+               D+ +
Sbjct: 435 NQMENLGC--SPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVM 492

Query: 132 NANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +  +L      LC+   +++A +LL  +   G+ P I TY  L+NG+C    +N A  LF
Sbjct: 493 DTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLF 552

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
             +  KG  PD  +Y  LI+G+ +    E+A  V  +M+ NG          C      +
Sbjct: 553 RELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNG----------CTPSSAVY 602

Query: 246 TCNIFIDGLCKNGHV-------LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            C   +   C+ G +       L+ +   P+ E    +L  E F          G  E A
Sbjct: 603 KC--LMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEK--------GELEKA 652

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
                +++ K    ++  Y I +  L +  + ++   + L ++E  C +DV+  + +M+
Sbjct: 653 VRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKE--CQMDVNPPSCVML 709



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 112/262 (42%), Gaps = 20/262 (7%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKTKLVEANRLLEL---MMQRG 157
           +ID L KD   D    +  E+K+  I       + L+    K   A + +E    M   G
Sbjct: 102 VIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFG 161

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
             P +FTY  +L+         +A+A+++ M +  + P+  ++ +L+NG CKN   ++A+
Sbjct: 162 CKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDAL 221

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
                       K+F+EM    + P T    I + GLC+     +V  L  T+++S C  
Sbjct: 222 ------------KMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCP 269

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
                N+L+ G CK G  + A  L      +  V  +  Y+ LI  L +  +  +     
Sbjct: 270 DSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWC 329

Query: 338 LSMEENGCALDVDTFNTLMISF 359
             M + G   DV  +  L+  F
Sbjct: 330 RKMFKAGIEPDVVLYTILIRGF 351



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 131/321 (40%), Gaps = 79/321 (24%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           R ++  +  ++++  C  G I  A +L+ ++A  G  P++ T + LI G  +  N+N   
Sbjct: 490 RVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAF 549

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139
           KL +E+        G + P+   YG+LIDG  +   VD+ +D F                
Sbjct: 550 KLFREL-----QLKG-HSPDSVTYGTLIDGFHR---VDREEDAF---------------- 584

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR--------- 190
                   R+L+ M++ G  P    Y  L+   C  GK++VA +L+    R         
Sbjct: 585 --------RVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDET 636

Query: 191 ---------KGFMP----------------DVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
                    KG +                 ++  Y++ + G C+    EEA+        
Sbjct: 637 LKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEAL-------- 688

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
               KIF  +K C +     +C + I+GLCK+G++   +++F         L   I N L
Sbjct: 689 ----KIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQL 744

Query: 286 IRGCCKFGIFEIASELFNKLS 306
           +R        + A +L N+++
Sbjct: 745 LRSLILQDKMKHALDLLNRMN 765



 Score = 38.5 bits (88), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T N+ ID L K+       ++   L+ SN ++    F+ LI    K G+ E A E F K+
Sbjct: 98  THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKM 157

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
                  DV  YN ++H +     ++KE +LL
Sbjct: 158 KDFGCKPDVFTYNSILHVM-----VQKEVFLL 184


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 147/320 (45%), Gaps = 26/320 (8%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           R +  L+  TFN LI+G C  G++ +A +L+  M +FGC P++ T + L+ GL R   ++
Sbjct: 206 RSHSCLDAFTFNILIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVD 265

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
               L +E+          + PNV  Y ++I G C+   +D+   LF EM   G   N  
Sbjct: 266 RARDLLEEVC-----LKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVF 320

Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                     K   +  A  + + ++  G  P + T T L+NGYC  G VN  + L+  M
Sbjct: 321 TFSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREM 380

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
             +    ++++YSVLI+  CK+  ++EA N+ R             +K  ++VP  F  N
Sbjct: 381 NARNIPANLYTYSVLISALCKSNRLQEARNLLR------------ILKQSDIVPLAFVYN 428

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             IDG CK+G++ E   +   +E   C+     F  LI G C  G    A  +F K+   
Sbjct: 429 PVIDGYCKSGNIDEANAIVAEME-EKCKPDKLTFTILIIGHCMKGRTPEAIGIFYKMLAS 487

Query: 309 NLVADVVAYNILIHALGKEG 328
               D +    L   L K G
Sbjct: 488 GCTPDDITIRTLSSCLLKSG 507



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 148/338 (43%), Gaps = 45/338 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           + +N+ +        + DA  L +++       +  T + LI GL   G+++       E
Sbjct: 179 IVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAF----E 234

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           ++  MG FG    P++  Y  L+ GLC+   VD+ +DL  E           +C K +  
Sbjct: 235 LLGDMGSFGC--SPDIVTYNILLHGLCRIDQVDRARDLLEE-----------VCLKCEFA 281

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
                          P + +YT +++GYC + K++ A +LF  M R G  P+VF++S L+
Sbjct: 282 ---------------PNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALV 326

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           +G+ K  ++  A+ + ++++ +G              P   T    I+G C+ G V   +
Sbjct: 327 DGFVKAGDMASALGMHKKILFHG------------CAPNVITLTSLINGYCRAGWVNHGL 374

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           +L+  +   N    +  ++ LI   CK    + A  L   L   ++V     YN +I   
Sbjct: 375 DLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGY 434

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            K G I + N ++  MEE  C  D  TF  L+I    K
Sbjct: 435 CKSGNIDEANAIVAEMEEK-CKPDKLTFTILIIGHCMK 471



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 112/263 (42%), Gaps = 51/263 (19%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
           +C    N V++ ++I G+C    + +AS L  +M   G +PNV T   L+ G  + G+M 
Sbjct: 277 KCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMA 336

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-- 134
             L +H++++     F G   PNV    SLI+G C+   V+   DL+ EM  + I AN  
Sbjct: 337 SALGMHKKIL-----FHGC-APNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLY 390

Query: 135 ------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTP--------------------- 167
                 + LCK  +L EA  LL ++ Q  + P+ F Y P                     
Sbjct: 391 TYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEM 450

Query: 168 -------------LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
                        L+ G+C+ G+   AI +F  M   G  PD  +   L +   K+    
Sbjct: 451 EEKCKPDKLTFTILIIGHCMKGRTPEAIGIFYKMLASGCTPDDITIRTLSSCLLKSGMPG 510

Query: 215 EAMNVSREMILNG---FKKIFNE 234
           EA  +   +  N     KK ++E
Sbjct: 511 EAARIKETLFENQESILKKSYHE 533



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 32/227 (14%)

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
           +TY  LL   C  G  N A  L+DSM   G +PD    S L+     +F + +  +VS+E
Sbjct: 109 WTYNMLLRSLCQAGLHNSAKLLYDSMRSDGQLPD----SRLLGFLVSSFALADRFDVSKE 164

Query: 223 M--------------ILNGFKKI-------------FNEMKLCNVVPETFTCNIFIDGLC 255
           +              + N F  I             F E+   +   + FT NI I GLC
Sbjct: 165 LLAEAQCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLC 224

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-NLVADV 314
             G V E  EL   +    C   +  +N L+ G C+    + A +L  ++  K     +V
Sbjct: 225 TAGDVDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNV 284

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           V+Y  +I    +  ++ + + L   M  +G   +V TF+ L+  F++
Sbjct: 285 VSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVK 331


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 191/452 (42%), Gaps = 98/452 (21%)

Query: 9   MAFGSFIRRCYR--PLNDVTFNSLIKGFCMEGNIRDA----------------------- 43
           +AFG F R        N VT+++LI G C EG + +A                       
Sbjct: 251 LAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPI 310

Query: 44  ------------SQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV----- 86
                        +LV +M   GCRPNV T   LI+GL R G + + + L+ +M+     
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370

Query: 87  ------NGM-------GDFGGIYK-----------PNVFCYGSLIDGLCKDRLVDQTKDL 122
                 N +       G F    K            N   Y  +I GLC    +++   L
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430

Query: 123 FMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F +M   G     +  NTL+     K  +  A RLL+LM + G  P  +TY  L++G+  
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM----------- 223
            GK+  A   F  M   G  P+  SY+ LI+G+ K+  V+ A+++ + M           
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550

Query: 224 ---ILNGFKK--IFNEM-KLCN------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
              ++NG  K   F+E  K+C+      ++P   T    IDGLC+NG      ++F  +E
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 610

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
              C   +  ++SLI G C+ G  + A  L  ++  K L  D V +  LI      G+I 
Sbjct: 611 KRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRID 670

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               LL  M + GC  +  T++ L+   LQKE
Sbjct: 671 HAFLLLRRMVDMGCKPNYRTYSVLLKG-LQKE 701



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 158/328 (48%), Gaps = 26/328 (7%)

Query: 40  IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99
           +  A  L K+M   G +P++ T +TLI  L + G +     +  ++      F     P+
Sbjct: 179 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI------FQYDLSPD 232

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           VF Y SLI G C++R +D    +F  M  +G + N++        LC + ++ EA  +LE
Sbjct: 233 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLE 292

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            M+++G+ P ++TYT  +   C +     AI L   M ++G  P+V +Y+ LI+G  +  
Sbjct: 293 EMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLG 352

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            +E A+ +  +M+  G            +VP T T N  I+ LC  G     +++F  +E
Sbjct: 353 KLEVAIGLYHKMLKEG------------LVPNTVTYNALINELCVGGRFSTALKIFHWME 400

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
                   + +N +I+G C  G  E A  LF K+     +  VV YN LI+    +G + 
Sbjct: 401 GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVN 460

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
               LL  M+ENGC  D  T+N L+  F
Sbjct: 461 NAARLLDLMKENGCEPDEWTYNELVSGF 488



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 141/279 (50%), Gaps = 25/279 (8%)

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL---L 137
           ++GMG    +Y  N     +L+  L K  +V+  ++L+ +M + GI       NTL   L
Sbjct: 154 ISGMGFGFSLYSCN-----TLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINIL 208

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            KK K+ EA  +L  + Q  L+P +FTYT L+ G+C    +++A  +FD M ++G  P+ 
Sbjct: 209 SKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNS 268

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +YS LING C    V+EA+++  EMI  G +            P  +T  + I  LC  
Sbjct: 269 VTYSTLINGLCNEGRVDEALDMLEEMIEKGIE------------PTVYTYTLPITALCAI 316

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
            H  E +EL   ++   C   V+ + +LI G  + G  E+A  L++K+  + LV + V Y
Sbjct: 317 EHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTY 376

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N LI+ L   G+      +   ME +G   +  T+N ++
Sbjct: 377 NALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEII 415


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 151/321 (47%), Gaps = 26/321 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N L+ G C EG + +A + +  M ++G +PNV T + ++  +  TG      KL  E
Sbjct: 52  VTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTE 111

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV           P+V  +  LI+ LC+  L+ +  D+  +M   G   N+L        
Sbjct: 112 MVRKG------CSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHG 165

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+  A + LE+M+ RG  P I TY  +L   C  GKV+ A+ L + ++ KG  P 
Sbjct: 166 FCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPV 225

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ +I+G  K    ++A+ +  EM   G K            P+  T +  I GL +
Sbjct: 226 LITYNTVIDGLSKVGKTDQAVELLHEMRGKGLK------------PDVITYSSLIAGLSR 273

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V E ++ F  +E    +     +NS++ G CK    + A +    +  K      V+
Sbjct: 274 EGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVS 333

Query: 317 YNILIHALGKEGQIKKENYLL 337
           Y ILI  +  EG  K+   LL
Sbjct: 334 YTILIEGIANEGLAKEALELL 354



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 146/317 (46%), Gaps = 26/317 (8%)

Query: 55  CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR 114
           C P+V T   LI        +   +KL  EM    G  G   KP+V  Y  L++G+CK+ 
Sbjct: 12  CYPDVITYTILIEATCAESGVGQAMKLLDEM----GSRG--CKPDVVTYNVLVNGMCKEG 65

Query: 115 LVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
            +D+       M   G   N +        +C   + ++A +LL  M+++G +P + T+ 
Sbjct: 66  RLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFN 125

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            L+N  C  G +  AI + + M   G  P+  SY+ L++G+CK   ++ A+     M+  
Sbjct: 126 ILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSR 185

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
           G              P+  T N  +  LCK+G V   +EL   L    C   +  +N++I
Sbjct: 186 G------------CYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVI 233

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
            G  K G  + A EL +++  K L  DV+ Y+ LI  L +EG++++       +E  G  
Sbjct: 234 DGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVK 293

Query: 347 LDVDTFNTLMISFLQKE 363
            +  T+N++M    + +
Sbjct: 294 PNAFTYNSIMFGLCKAQ 310



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 153/329 (46%), Gaps = 35/329 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K L ++ ++GS      +P N +T N +++  C  G   DA +L+ +M   GC P+V T 
Sbjct: 72  KFLNSMPSYGS------QP-NVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTF 124

Query: 63  DTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
           + LI  L R G +   + + ++M  +G         PN   Y  L+ G CK++ +D+   
Sbjct: 125 NILINFLCRKGLLGRAIDILEKMPTHGC-------TPNSLSYNPLLHGFCKEKKMDRAIQ 177

Query: 122 LFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
               M  +G     +  NT+L   CK  K+  A  LL  +  +G +PV+ TY  +++G  
Sbjct: 178 YLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLS 237

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
            VGK + A+ L   M  KG  PDV +YS LI G  +   VEEA+            K F+
Sbjct: 238 KVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAI------------KFFH 285

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +++   V P  FT N  + GLCK       ++    +    C+     +  LI G    G
Sbjct: 286 DVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEG 345

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIH 322
           + + A EL N+L  + +V    A  +++ 
Sbjct: 346 LAKEALELLNELCSRGVVKKSSAEQVVVR 374



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 12/212 (5%)

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            +L+  +++   P + TYT L+   C    V  A+ L D M  +G  PDV +Y+VL+NG 
Sbjct: 2   EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGM 61

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           CK   ++EA+            K  N M      P   T NI +  +C  G  ++  +L 
Sbjct: 62  CKEGRLDEAI------------KFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLL 109

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +    C   V  FN LI   C+ G+   A ++  K+       + ++YN L+H   KE
Sbjct: 110 TEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKE 169

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            ++ +    L  M   GC  D+ T+NT++ + 
Sbjct: 170 KKMDRAIQYLEIMVSRGCYPDIVTYNTMLTAL 201



 Score = 37.4 bits (85), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 43/96 (44%)

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           ME+        C   V  +  LI   C       A +L +++  +    DVV YN+L++ 
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + KEG++ +    L SM   G   +V T N ++ S 
Sbjct: 61  MCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSM 96


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 150/333 (45%), Gaps = 27/333 (8%)

Query: 35  CMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGG 94
           C  GN  ++  L++ M   G  P+V  C  LI G         TL+   + V  M     
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGF-------FTLRNIPKAVRVMEILEK 152

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEA 146
             +P+VF Y +LI+G CK   +D    +   M+ K  + +T+        LC + KL  A
Sbjct: 153 FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 212

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
            ++L  ++     P + TYT L+    L G V+ A+ L D M  +G  PD+F+Y+ +I G
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            CK   V+ A  + R + L G +            P+  + NI +  L   G   E  +L
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGSE------------PDVISYNILLRALLNQGKWEEGEKL 320

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +    C+  V  ++ LI   C+ G  E A  L   +  K L  D  +Y+ LI A  +
Sbjct: 321 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 380

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           EG++      L +M  +GC  D+  +NT++ + 
Sbjct: 381 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATL 413



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 169/378 (44%), Gaps = 63/378 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N +I   C  G +  A +++ ++ +  C+P V T   LI      G ++  LKL 
Sbjct: 192 DTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLM 251

Query: 83  QEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------- 134
            EM++ G+       KP++F Y ++I G+CK+ +VD+  ++   ++ KG   +       
Sbjct: 252 DEMLSRGL-------KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNIL 304

Query: 135 ------------------------------------TLLCKKTKLVEANRLLELMMQRGL 158
                                               T LC+  K+ EA  LL+LM ++GL
Sbjct: 305 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P  ++Y PL+  +C  G+++VAI   ++M   G +PD+ +Y+ ++   CKN   ++A+ 
Sbjct: 365 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL- 423

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
                      +IF ++      P + + N     L  +G  +  + +   +  +  +  
Sbjct: 424 -----------EIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPD 472

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
              +NS+I   C+ G+ + A EL   +        VV YNI++    K  +I+    +L 
Sbjct: 473 EITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLE 532

Query: 339 SMEENGCALDVDTFNTLM 356
           SM  NGC  +  T+  L+
Sbjct: 533 SMVGNGCRPNETTYTVLI 550



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 20/233 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +++ LI  FC EG +  A + ++ M + GC P++   +T++  L + G  +  L    E+
Sbjct: 370 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL----EI 425

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
              +G+ G    PN   Y ++   L       +   + +EM   GI+ + +        L
Sbjct: 426 FGKLGEVGC--SPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C++  + EA  LL  M     +P + TY  +L G+C   ++  AI + +SM   G  P+ 
Sbjct: 484 CREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNE 543

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMIL------NGFKKIFNEMKLCNVVPET 244
            +Y+VLI G        EAM ++ +++         FK++     L NV+  +
Sbjct: 544 TTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRLHRTFPLLNVLQRS 596



 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R C    + VT+N ++ GFC    I DA  +++ M   GCRPN TT   LI G+   G 
Sbjct: 499 MRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGY 558

Query: 75  MNLTLKLHQEMV 86
               ++L  ++V
Sbjct: 559 RAEAMELANDLV 570


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 172/373 (46%), Gaps = 37/373 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I+G+C    + +A +L+  M + GC P+  +  T++  L +   +       
Sbjct: 314 NVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEV---- 369

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++++  M    G+ +  V  Y +LI  L K    D+      + ++KG   + +      
Sbjct: 370 RDLMKKMAKEHGLVRDQV-TYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIV 428

Query: 137 --LCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
             LCK+ ++ EA  L+  M+ +G   P + TYT ++NG+C +G+V+ A  L   M   G+
Sbjct: 429 HALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGY 488

Query: 194 MPDVFSYSVLINGYC---KNFNVEEAMNVSRE-----------MILNGFKK--------- 230
            P+  SY+ L+NG C   K+    E MN+S E           ++++G +K         
Sbjct: 489 KPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACD 548

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           +  EM L    P     N+ +  LC++G   E  +         C + V  F ++I G C
Sbjct: 549 VVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFC 608

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           +    + A  + + +   N  ADV  Y  L+ ALGK+G+I +   L+  M   G      
Sbjct: 609 QNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPV 668

Query: 351 TFNTLMISFLQKE 363
           T+ T++  + Q E
Sbjct: 669 TYRTVIHRYCQME 681



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 152/371 (40%), Gaps = 39/371 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            F  ++  +   G +RDA +++  M   G  PN+  C+T I    R   +   L+  + M
Sbjct: 247 AFLRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERM 306

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                   GI  PNV  Y  +I G C    V++  +L  +M  KG   + +        L
Sbjct: 307 -----QVVGIV-PNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYL 360

Query: 138 CKKTKLVEANRLLELMM-QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           CK+ ++VE   L++ M  + GL     TY  L++        + A+        KGF  D
Sbjct: 361 CKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRID 420

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM---------------ILNGF---------KKIF 232
              YS +++  CK   + EA ++  EM               ++NGF         KK+ 
Sbjct: 421 KVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLL 480

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
             M      P T +    ++GLC+ G  LE  E+    E          ++ L+ G  K 
Sbjct: 481 QIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKE 540

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G    A ++  ++  K      V  N+L+ +L ++G+  +    +      GCA++V  F
Sbjct: 541 GKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNF 600

Query: 353 NTLMISFLQKE 363
            T++  F Q +
Sbjct: 601 TTVIHGFCQND 611



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 139/294 (47%), Gaps = 30/294 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+ +++ GFC  G +  A +L++ M T G +PN  +   L+ GL RTG    +L+
Sbjct: 454 PPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGK---SLE 510

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
             +EM+N   +    + PN   Y  L+ GL K+  + +  D+  EM  KG     +  N 
Sbjct: 511 A-REMMNMSEE--QWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINL 567

Query: 136 L---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L   LC+  +  EA + +E  + +G    +  +T +++G+C   +++ A+++ D M    
Sbjct: 568 LLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLIN 627

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              DVF+Y+ L++   K   + EA  + ++M+  G            + P   T    I 
Sbjct: 628 KHADVFTYTTLVDALGKKGRIAEATELMKKMLHKG------------IDPTPVTYRTVIH 675

Query: 253 GLCKNGHVLEVMELFPTLEI-SNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
             C+   V +++ +   + +   C+    I+N +I   C  G  E A +L  K+
Sbjct: 676 RYCQMEKVDDLVAILEKMILRQKCKT---IYNQVIEKLCGLGKLEEADKLLGKV 726



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 123/281 (43%), Gaps = 22/281 (7%)

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--------NANTLLCKK 140
             D    Y+ +   Y S+++ L K ++    + + + MK +GI               + 
Sbjct: 199 WADRQWRYRHDPMVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRA 258

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            +L +A ++L LM + G+ P +      ++ +    ++  A+   + M   G +P+V +Y
Sbjct: 259 GQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTY 318

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + +I GYC    VEEA+            ++ ++M     +P+  +    +  LCK   +
Sbjct: 319 NCMIRGYCDLHRVEEAI------------ELLDDMPSKGCLPDKVSYYTIMGYLCKEKRI 366

Query: 261 LEVMELFPTLEISNCELFVEI-FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           +EV +L   +   +  +  ++ +N+LI    K    + A         K    D V Y+ 
Sbjct: 367 VEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSA 426

Query: 320 LIHALGKEGQIKKENYLLLSMEENG-CALDVDTFNTLMISF 359
           ++HAL KEG++ +   L+  M   G C  DV T+  ++  F
Sbjct: 427 IVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGF 467



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 12/182 (6%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V F ++I GFC    +  A  ++  M       +V T  TL+  L + G +    +L
Sbjct: 595 INVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATEL 654

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK----DRLVDQTKDLFMEMKDKGINANTL- 136
            ++M++   D      P    Y ++I   C+    D LV   + + +  K K I    + 
Sbjct: 655 MKKMLHKGID------PTPVTYRTVIHRYCQMEKVDDLVAILEKMILRQKCKTIYNQVIE 708

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LC   KL EA++LL  +++        T   L+ GY  +G   +A  +   M  +  +P
Sbjct: 709 KLCGLGKLEEADKLLGKVLRTASRSDAKTCYALMEGYLKIGVPLLAYKVACRMFNRNLIP 768

Query: 196 DV 197
           DV
Sbjct: 769 DV 770


>gi|413936859|gb|AFW71410.1| hypothetical protein ZEAMMB73_528560 [Zea mays]
          Length = 671

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 165/371 (44%), Gaps = 64/371 (17%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            IR    P N+VTF + I+ FC  G +  A +L+++M  +GC P+V    TL+ G    G
Sbjct: 242 MIRNSCHP-NEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHG 300

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            ++  LKL   M         + +PN  CY + + GLC     ++  +L  EM       
Sbjct: 301 RVDEALKLLNTM---------LCRPNTVCYNAALKGLCIAGRWEEVGELIAEM------- 344

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                               +++   P   T++ L+N  C    V  A+ + + M + G+
Sbjct: 345 --------------------VRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGY 384

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGFKKIFNEMKL-- 237
           MPDV SY+ +I+ +      ++A+ + + M+              L   K+ ++ ++L  
Sbjct: 385 MPDVVSYNTIISCFSDQARADDALKLLKSMLCKPDTISFNAVLKCLCKAKRWYDAVELVA 444

Query: 238 ------CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                 C +   TF  NI ID LC+NG V + +E+F  +    C   +  ++SLI G  +
Sbjct: 445 KMLKKDCRINEMTF--NILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSE 502

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G+ E+A +LF  + C+   AD+ +YN  +  L    +      L+  M    C  +  T
Sbjct: 503 QGLDEMAFDLFRSMPCR---ADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVT 559

Query: 352 FNTLMISFLQK 362
           FN L+ S  QK
Sbjct: 560 FNILISSLCQK 570



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 154/354 (43%), Gaps = 63/354 (17%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +VL AL A G+         + V+ N+L+ G+C +G++ DA ++V+     G   NV T 
Sbjct: 137 RVLEALKASGA--------ADAVSHNTLVAGYCRDGSLGDAERVVEAARASGT-ANVVTY 187

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
             LI G  R+G +   L+L   M            P+ + Y +++ GLC  +  +Q ++L
Sbjct: 188 TALIDGYCRSGRLADALRLIASMP---------VAPDTYTYNTVLKGLCCAKQWEQAEEL 238

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
             EM                           ++   +P   T+   +  +C  G ++ A+
Sbjct: 239 MREM---------------------------IRNSCHPNEVTFATQIRAFCQNGLLDRAV 271

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            L + M + G  PDV  YS L+NG+ ++  V+EA+            K+ N M LC   P
Sbjct: 272 ELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEAL------------KLLNTM-LCR--P 316

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
            T   N  + GLC  G   EV EL   +   +C      F++LI   C+  + E A E+ 
Sbjct: 317 NTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVL 376

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ++     + DVV+YN +I     + +      LL SM    C  D  +FN ++
Sbjct: 377 EQMQKYGYMPDVVSYNTIISCFSDQARADDALKLLKSML---CKPDTISFNAVL 427



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 153/349 (43%), Gaps = 30/349 (8%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N V +N+ +KG C+ G   +  +L+ +M    C PN  T  TLI  L      N  +
Sbjct: 315 RP-NTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDATFSTLINSL----CQNRLV 369

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANTLL 137
           +   E++  M  +G  Y P+V  Y ++I         D    L   M  K   I+ N +L
Sbjct: 370 EYAVEVLEQMQKYG--YMPDVVSYNTIISCFSDQARADDALKLLKSMLCKPDTISFNAVL 427

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  +  +A  L+  M+++       T+  L++  C  G+V  AI +F+ M +   M
Sbjct: 428 KCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCM 487

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ +YS LING+ +    E A ++ R M                   + F+ N  + GL
Sbjct: 488 PDIVTYSSLINGFSEQGLDEMAFDLFRSMPCRA---------------DIFSYNATLKGL 532

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C      +  EL   +   +C      FN LI   C+ G+   A +++ ++    +  D+
Sbjct: 533 CMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQMPKYGITPDI 592

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             YN LI+   ++G++      L +M    C  D  ++N+++    + E
Sbjct: 593 FTYNALINGYSEQGRLDDALKFLSTMP---CEPDTISYNSILKGLCRAE 638



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 153/348 (43%), Gaps = 49/348 (14%)

Query: 4   VLGALMAFGSFIRRCYR---PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + G     G  I    R   P ND TF++LI   C    +  A +++++M  +G  P+V 
Sbjct: 330 IAGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVV 389

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           + +T+I+        +  LKL + M         + KP+   + +++  LCK +      
Sbjct: 390 SYNTIISCFSDQARADDALKLLKSM---------LCKPDTISFNAVLKCLCKAKRWYDAV 440

Query: 121 DLFMEM--KDKGINANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L  +M  KD  IN  T       LC+  ++ +A  + ELM +    P I TY+ L+NG+
Sbjct: 441 ELVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGF 500

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI-------- 224
              G   +A  LF SM  +    D+FSY+  + G C     ++A  +  +M+        
Sbjct: 501 SEQGLDEMAFDLFRSMPCRA---DIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNE 557

Query: 225 ---------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                          +N    ++ +M    + P+ FT N  I+G  + G + + ++   T
Sbjct: 558 VTFNILISSLCQKGLVNRAIDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFLST 617

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           +    CE     +NS+++G C+   ++ A +L  ++  KN   + V +
Sbjct: 618 MP---CEPDTISYNSILKGLCRAERWKDAEKLVTEMLRKNCTPNEVTF 662



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
           P   +CNI I  LC    + +   +   L+ S     V   N+L+ G C+ G    A  +
Sbjct: 114 PAVISCNILIKKLCARRRLADAERVLEALKASGAADAVS-HNTLVAGYCRDGSLGDAERV 172

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                     A+VV Y  LI    + G++     L+ SM     A D  T+NT++
Sbjct: 173 VEAARASG-TANVVTYTALIDGYCRSGRLADALRLIASMP---VAPDTYTYNTVL 223


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 151/333 (45%), Gaps = 27/333 (8%)

Query: 35  CMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGG 94
           C  GN  ++  L++ M   G  P+V  C  LI G         TL+   + V  M     
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGF-------FTLRNIPKAVRVMEILEK 152

Query: 95  IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEA 146
             +P+VF Y +LI+G CK   +D    +   M+ K  + +T+        LC + KL  A
Sbjct: 153 FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 212

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
            ++L  ++     P + TYT L+    L G V+ A+ L D M  +G  PD+F+Y+ +I G
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            CK   V+ A  + R +          E+K C   P+  + NI +  L   G   E  +L
Sbjct: 273 MCKEGMVDRAFEMVRNL----------ELKGCE--PDVISYNILLRALLNQGKWEEGEKL 320

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +    C+  V  ++ LI   C+ G  E A  L   +  K L  D  +Y+ LI A  +
Sbjct: 321 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 380

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           EG++      L +M  +GC  D+  +NT++ + 
Sbjct: 381 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATL 413



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 169/377 (44%), Gaps = 61/377 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N +I   C  G +  A +++ ++ +  C+P V T   LI      G ++  LKL 
Sbjct: 192 DTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLM 251

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
            EM++      G+ KP++F Y ++I G+CK+ +VD+  ++   ++ KG   +        
Sbjct: 252 DEMLSR-----GL-KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305

Query: 135 -----------------------------------TLLCKKTKLVEANRLLELMMQRGLN 159
                                              T LC+  K+ EA  LL+LM ++GL 
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLT 365

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P  ++Y PL+  +C  G+++VAI   ++M   G +PD+ +Y+ ++   CKN   ++A+  
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL-- 423

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                     +IF ++      P + + N     L  +G  +  + +   +  +  +   
Sbjct: 424 ----------EIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDE 473

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
             +NS+I   C+ G+ + A EL   +        VV YNI++    K  +I+    +L S
Sbjct: 474 ITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLES 533

Query: 340 MEENGCALDVDTFNTLM 356
           M  NGC  +  T+  L+
Sbjct: 534 MVGNGCRPNETTYTVLI 550



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 20/233 (8%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           +++ LI  FC EG +  A + ++ M + GC P++   +T++  L + G  +  L    E+
Sbjct: 370 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL----EI 425

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
              +G+ G    PN   Y ++   L       +   + +EM   GI+ + +        L
Sbjct: 426 FGKLGEVGC--SPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C++  + EA  LL  M     +P + TY  +L G+C   ++  AI + +SM   G  P+ 
Sbjct: 484 CREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNE 543

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMIL------NGFKKIFNEMKLCNVVPET 244
            +Y+VLI G        EAM ++ +++         FK++     L NV+  +
Sbjct: 544 TTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRLHRTFPLLNVLQRS 596



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +R C    + VT+N ++ GFC    I DA  +++ M   GCRPN TT   LI G+   G 
Sbjct: 499 MRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGY 558

Query: 75  MNLTLKLHQEMV 86
               ++L  ++V
Sbjct: 559 RAEAMELANDLV 570


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 154/348 (44%), Gaps = 61/348 (17%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   +   I+  C E  + +A ++ + M   G  PN+ T   +I G  +TGN+     L+
Sbjct: 267 NVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLY 326

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
           +E++           PNV  +G+L+DG CK R +   + LF+ M   G++ N  +     
Sbjct: 327 KEILVAE------LLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLI 380

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK   ++EA  LL  M    L+P +FTYT L+NG C   ++  A  LF  M  +   
Sbjct: 381 HGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIF 440

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P   +Y+ LI+G+CK +N+E+A+++  EM  +G            V P   T +  IDG 
Sbjct: 441 PSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSG------------VEPNIITFSTLIDGY 488

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK  ++   M L+                           FE        ++ K +V DV
Sbjct: 489 CKVRNIKAAMGLY---------------------------FE--------MTIKGIVPDV 513

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V Y  LI A  KE  +K+   L   M E G   +  TF  L+  F ++
Sbjct: 514 VTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKE 561



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 148/353 (41%), Gaps = 59/353 (16%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  F   G   DA  + ++M    C P+   C  ++ GL R    +     +Q M+
Sbjct: 169 FSLLIMEFLEMGLFEDALWVSREMR---CSPDSKACLAILNGLVRRRRFDSVWVDYQLMI 225

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
           +      G+  P+V  Y  L     K          F   K+K                 
Sbjct: 226 SR-----GLV-PDVHIYSVLFQCCFKQG--------FPSKKEK----------------- 254

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
             LL+ M   G+ P ++ YT  +   C   K+  A  +F+ M   G +P++++YS +I+G
Sbjct: 255 --LLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDG 312

Query: 207 YCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMKLCNVVPE 243
           YCK  N+ +A  + +E+              +++GF         + +F  M    V P 
Sbjct: 313 YCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPN 372

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
            +  N  I G CK+G++LE M L   +E  N    V  +  LI G C       A+ LF 
Sbjct: 373 LYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQ 432

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++  + +    V YN LIH   KE  I+K   L   M  +G   ++ TF+TL+
Sbjct: 433 RMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLI 485



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 24/222 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+NSLI GFC E NI  A  L  +M + G  PN+ T  TLI G  +  N+   + L+
Sbjct: 442 SSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLY 501

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--TLLCKK 140
            EM        GI  P+V  Y +LID   K+  + +   L+ +M + GI+ N  T  C  
Sbjct: 502 FEMT-----IKGIV-PDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLV 555

Query: 141 TKLVEANRLLELM---------------MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
               +  RL + +               +QR     +  +T L+ G C  G +  A   F
Sbjct: 556 DGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYV-GFTCLIEGLCQNGYILRASRFF 614

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
             M   G  PD++SY  ++  + +   + + M +  +MI  G
Sbjct: 615 SDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHCDMIKTG 656


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 167/354 (47%), Gaps = 38/354 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +LI G C    + DA +L+  M++ GC PN    D LI G  + G ++      
Sbjct: 610 NVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNA---- 665

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           QE+   M   G  Y P V  Y SLID + KDR +D    +  +M +     N +      
Sbjct: 666 QEVFFRMSKCG--YLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMI 723

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +  +A +LL +M +RG NP + TYT L++G    GKV++++ LF  M  +G  
Sbjct: 724 DGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCA 783

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIF-------N 233
           P+  +Y VLIN  C    ++EA ++  EM              ++ GF K F        
Sbjct: 784 PNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLE 843

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV---EIFNSLIRGCC 290
           E++   +V       + ID   K G + + +EL   +   +  L +   + + SLI+  C
Sbjct: 844 ELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALC 903

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
                E A EL+++++ K +V ++ A+  LI  L K  +  +   L  SM + G
Sbjct: 904 LASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEG 957



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 156/348 (44%), Gaps = 49/348 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +L+  +     +  AS +  +M   GC PN  T   L+ GL + G      +++ +
Sbjct: 526 VTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAK 585

Query: 85  MVNGMGDFGGIY----------KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           M+    + G  +           PNV  YG+LIDGLCK                      
Sbjct: 586 MIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAH-------------------- 625

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
                  K+V+A  LL++M   G  P    Y  L++G+C VGK++ A  +F  M++ G++
Sbjct: 626 -------KVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYL 678

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P V +Y+ LI+   K+  ++ A+            K+ ++M   +  P   T    IDGL
Sbjct: 679 PTVHTYTSLIDAMFKDRRLDLAI------------KVLSQMLESSCTPNVVTYTAMIDGL 726

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C+ G   + ++L   +E   C   V  + SLI G  K G  +++ +LF ++  +    + 
Sbjct: 727 CRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNY 786

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V Y +LI+     G + + + LL  M++      V  + +++  F +K
Sbjct: 787 VTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKK 834



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 161/387 (41%), Gaps = 59/387 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG------LRRTGNMN 76
           N   FNSL+  +C   +   A +L+ +MA  GC P     +  I        L     + 
Sbjct: 343 NPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLA 402

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT- 135
           L  K+++EM   +     + K N   +   + G+ K    D+   +   M  KG   +T 
Sbjct: 403 LAEKVYEEM---LASSCVLNKVNTANFARCLCGMGK---FDKAFQIIKLMMRKGFVPDTS 456

Query: 136 -------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
                   LC+  K+ +A  L + M   G+ P ++TYT L++ +C VG +  A + FD M
Sbjct: 457 TYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEM 516

Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGFKKIFNE 234
              G  P V +Y+ L++ Y K   V +A ++   M+              ++G  K    
Sbjct: 517 ESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGES 576

Query: 235 MKLCNV-------------------------VPETFTCNIFIDGLCKNGHVLEVMELFPT 269
            K C V                          P   T    IDGLCK   V++  EL   
Sbjct: 577 QKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDV 636

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +  + CE    I+++LI G CK G  + A E+F ++S    +  V  Y  LI A+ K+ +
Sbjct: 637 MSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRR 696

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
           +     +L  M E+ C  +V T+  ++
Sbjct: 697 LDLAIKVLSQMLESSCTPNVVTYTAMI 723



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 148/393 (37%), Gaps = 63/393 (16%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            N +++  C  G    A + + ++  FG RP+  T + L+  L   G M++  ++ +EM 
Sbjct: 175 LNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMS 234

Query: 87  N--------GMGDFGGI------------------YKPNVFCYGSLIDGLCKDRLVDQTK 120
                     +G F                     +K +      +I GL +  L D+  
Sbjct: 235 ELGFCTDKFTVGCFAQALCKEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAI 294

Query: 121 DLFMEMK-----DKGINANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
                M+        +   TLL    KK +L    R++ +MM  G NP    +  L++ Y
Sbjct: 295 SFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSY 354

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE------AMNVSREMILN 226
           C       A  L + MA  G  P    Y++ I   C    +        A  V  EM+ +
Sbjct: 355 CNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLAS 414

Query: 227 G--------------------FKKIFNEMKLC---NVVPETFTCNIFIDGLCKNGHVLEV 263
                                F K F  +KL      VP+T T +  I  LC+   V + 
Sbjct: 415 SCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKA 474

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
             LF  ++       V  +  LI   CK G+ E A   F+++        VV Y  L+HA
Sbjct: 475 FLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHA 534

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             K  Q+ + + +   M + GCA +  T++ L+
Sbjct: 535 YLKTKQVPQASDIFHRMVDAGCAPNTITYSALV 567


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 168/373 (45%), Gaps = 39/373 (10%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           VL +    G  I R +  +++ T + +++ FC +G +  A    ++    G RPN+    
Sbjct: 218 VLESDRWLGGMIERGF-VVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFT 276

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            +I GL + G++    ++ +EMV      G  +KPNV+ + +LIDGLCK    ++   LF
Sbjct: 277 CMIEGLCKRGSVKQAFEMLEEMV------GRGWKPNVYTHTALIDGLCKKGWTEKAFRLF 330

Query: 124 MEM-KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           +++ + +    N L         C+  K+  A  LL  M ++GL P   TYT L++G+C 
Sbjct: 331 LKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCK 390

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---- 230
            G    A  L + M  +GF P+V +Y+ +++G CK   V+EA  V +    NG       
Sbjct: 391 AGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVT 450

Query: 231 -------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
                              +FN+M    + P+  +    I   C+   + E    F    
Sbjct: 451 YTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAV 510

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
                   + + S+I G C+ G   +A + F+++S     +D + Y  LI  L K+ ++ 
Sbjct: 511 RFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLD 570

Query: 332 KENYLLLSMEENG 344
           +   L  +M E G
Sbjct: 571 EARCLYDAMIEKG 583



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 152/339 (44%), Gaps = 37/339 (10%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           V  AL  F  F     RP N + F  +I+G C  G+++ A +++++M   G +PNV T  
Sbjct: 253 VTRALWYFRRFCEMGLRP-NLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHT 311

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            LI GL + G      +L  ++V         +KPNV  Y ++I G C+D  +++ + L 
Sbjct: 312 ALIDGLCKKGWTEKAFRLFLKLVRSEN-----HKPNVLTYTAMISGYCRDEKMNRAEMLL 366

Query: 124 MEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
             MK++G+  NT          CK      A  L+ +M + G +P + TY  +++G C  
Sbjct: 367 SRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKK 426

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK----- 230
           G+V  A  +  S  R G   D  +Y++LI+ +CK   +++A+ +  +M+ +G +      
Sbjct: 427 GRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSY 486

Query: 231 ------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                              F E     +VP   T    I G C+ G++   ++ F  +  
Sbjct: 487 TTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSD 546

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             C      + +LI G CK    + A  L++ +  K L 
Sbjct: 547 HGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLT 585



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 157/347 (45%), Gaps = 27/347 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T N ++K     G +  A  L  +M   G +PN  +   ++ G  + GN+  +       
Sbjct: 169 TLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLES----DRW 224

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
           + GM + G +          ++   C+   V +    F    + G+  N +        L
Sbjct: 225 LGGMIERGFVVDNATLSL--IVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGL 282

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR-KGFMPD 196
           CK+  + +A  +LE M+ RG  P ++T+T L++G C  G    A  LF  + R +   P+
Sbjct: 283 CKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPN 342

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V +Y+ +I+GYC++    E MN + EM+L+        MK   + P T T    IDG CK
Sbjct: 343 VLTYTAMISGYCRD----EKMNRA-EMLLS-------RMKEQGLAPNTNTYTTLIDGHCK 390

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G+     EL   +        V  +N+++ G CK G  + A ++        L AD V 
Sbjct: 391 AGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVT 450

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y ILI    K+ +IK+   L   M ++G   D+ ++ TL+  F +++
Sbjct: 451 YTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREK 497



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 32/243 (13%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           ++ EA  ++  M  +GL P   T   ++     +G V  A  LFD M  +G  P+  SY 
Sbjct: 147 RVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYR 206

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE------------------ 243
           V++ GYCK  NV E+      MI  GF  + +   L  +V E                  
Sbjct: 207 VMVVGYCKLGNVLESDRWLGGMIERGF--VVDNATLSLIVREFCEKGFVTRALWYFRRFC 264

Query: 244 ---------TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                     FTC   I+GLCK G V +  E+   +     +  V    +LI G CK G 
Sbjct: 265 EMGLRPNLINFTC--MIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGW 322

Query: 295 FEIASELFNKL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
            E A  LF KL   +N   +V+ Y  +I    ++ ++ +   LL  M+E G A + +T+ 
Sbjct: 323 TEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYT 382

Query: 354 TLM 356
           TL+
Sbjct: 383 TLI 385



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 104/281 (37%), Gaps = 84/281 (29%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   +R      N +T+ ++I G+C +  +  A  L+ +M   G  PN  T  TLI
Sbjct: 326 AFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLI 385

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-------------- 112
            G  + GN         E++N M + G  + PNV  Y +++DGLCK              
Sbjct: 386 DGHCKAGNFERAY----ELMNVMNEEG--FSPNVCTYNAIVDGLCKKGRVQEAYKVLKSG 439

Query: 113 -------DRL--------------VDQTKDLFMEMKDKGINAN--------TLLCKKTKL 143
                  D++              + Q   LF +M   GI  +         + C++ ++
Sbjct: 440 FRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRM 499

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA-------------------- 183
            E+    E  ++ GL P   TYT ++ GYC  G + +A+                     
Sbjct: 500 KESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGAL 559

Query: 184 ---------------LFDSMARKGFMPDVFSYSVLINGYCK 209
                          L+D+M  KG  P   +   L   YCK
Sbjct: 560 ISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCK 600


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 171/381 (44%), Gaps = 40/381 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F  +++    P N + F+SLI G C  G+I+ A +++++M   G +PNV T   LI
Sbjct: 282 AFWYFKKWVQMGLNP-NLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALI 340

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
            GL + G      +L  ++V         YKPNV+ Y  +I+G CK+  +++ + L + M
Sbjct: 341 DGLCKKGWTEKAFRLFLKLVRSDN-----YKPNVYTYTCMINGYCKEEKLNRAEMLLIRM 395

Query: 127 KDKGI--NANTLLC------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
           K++G+  N NT  C      K      A  L++LM + G  P IFTY  +++G C  G+ 
Sbjct: 396 KEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRF 455

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK--------- 229
             A  L     + G   D  +Y++LI+ +C+  + ++A+ +   M   G +         
Sbjct: 456 PEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVL 515

Query: 230 --------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                         K+F E     ++P   T    I G C++GH+   ++ F  +    C
Sbjct: 516 IATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGC 575

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           +     + +LI G C     + A +L+  +    L    V    L +   K+G       
Sbjct: 576 KPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMI 635

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           +L  +E+    L + T NTL+
Sbjct: 636 ILERLEKK---LWIRTVNTLI 653



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 160/362 (44%), Gaps = 39/362 (10%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I R Y  +++ T   +I  F  +G +  A    KK    G  PN+    +LI GL + G+
Sbjct: 255 IERGY-AVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGS 313

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-KDKGINA 133
           +    ++ +EMV         +KPNV+ + +LIDGLCK    ++   LF+++ +      
Sbjct: 314 IKQAFEMLEEMVRKG------WKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKP 367

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           N           CK+ KL  A  LL  M ++GL P   TYT L++G+C  G    A  L 
Sbjct: 368 NVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELM 427

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---------------- 229
           D M ++GF P++F+Y+ +I+G CK     EA  + R  + +G                  
Sbjct: 428 DLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQ 487

Query: 230 -------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                   IF+ M    + P+  T N+ I   C+   V E  +LF            E +
Sbjct: 488 TDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETY 547

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
            S+I G C+ G    A + F+K+       D + Y  LI  L  E ++ +   L  +M +
Sbjct: 548 TSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMID 607

Query: 343 NG 344
           NG
Sbjct: 608 NG 609



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 158/358 (44%), Gaps = 47/358 (13%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A   F   + R   P +  ++  ++ G+C  G I D  + +K M   G   +  TC  +I
Sbjct: 212 AEKVFDEMLDRAVVP-DSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMI 270

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +     G +N      ++ V  MG       PN+  + SLI+GLCK   + Q        
Sbjct: 271 STFSEKGFVNRAFWYFKKWVQ-MG-----LNPNLINFSSLINGLCKIGSIKQ-------- 316

Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                              A  +LE M+++G  P ++T+T L++G C  G    A  LF 
Sbjct: 317 -------------------AFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFL 357

Query: 187 SMARK-GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
            + R   + P+V++Y+ +INGYCK    EE +N +  +++         MK   +VP T 
Sbjct: 358 KLVRSDNYKPNVYTYTCMINGYCK----EEKLNRAEMLLI--------RMKEQGLVPNTN 405

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
           T    IDG CK G+     EL   +        +  +N++I G CK G F  A +L  + 
Sbjct: 406 TYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRG 465

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               L AD V Y ILI    ++   K+   +   M + G   D+ T+N L+ +F +++
Sbjct: 466 LKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQK 523



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 23/293 (7%)

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
           LK    MV  M + G + K  +  +  +ID       VD  + +F EM D+ +  ++   
Sbjct: 174 LKEAVNMVIEMQNHGLVLKARILNF--VIDVALALGFVDYAEKVFDEMLDRAVVPDSTSY 231

Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
                  C+  ++ + +R L+ M++RG      T T +++ +   G VN A   F    +
Sbjct: 232 KLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQ 291

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  P++ ++S LING CK  ++++A  +  EM+  G+K            P  +T    
Sbjct: 292 MGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWK------------PNVYTHTAL 339

Query: 251 IDGLCKNGHVLEVMELFPTLEIS-NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           IDGLCK G   +   LF  L  S N +  V  +  +I G CK      A  L  ++  + 
Sbjct: 340 IDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQG 399

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           LV +   Y  LI    K G   +   L+  M + G   ++ T+N ++    +K
Sbjct: 400 LVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKK 452


>gi|293333312|ref|NP_001168014.1| uncharacterized protein LOC100381738 [Zea mays]
 gi|223945505|gb|ACN26836.1| unknown [Zea mays]
          Length = 462

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 164/370 (44%), Gaps = 64/370 (17%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           IR    P N+VTF + I+ FC  G +  A +L+++M  +GC P+V    TL+ G    G 
Sbjct: 34  IRNSCHP-NEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHGR 92

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           ++  LKL   M         + +PN  CY + + GLC                       
Sbjct: 93  VDEALKLLNTM---------LCRPNTVCYNAALKGLCI---------------------- 121

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
                  +  E   L+  M+++   P   T++ L+N  C    V  A+ + + M + G+M
Sbjct: 122 -----AGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYM 176

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGFKKIFNEMKL--- 237
           PDV SY+ +I+ +      ++A+ + + M+              L   K+ ++ ++L   
Sbjct: 177 PDVVSYNTIISCFSDQARADDALKLLKSMLCKPDTISFNAVLKCLCKAKRWYDAVELVAK 236

Query: 238 -----CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
                C +   TF  NI ID LC+NG V + +E+F  +    C   +  ++SLI G  + 
Sbjct: 237 MLKKDCRINEMTF--NILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQ 294

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G+ E+A +LF  + C+   AD+ +YN  +  L    +      L+  M    C  +  TF
Sbjct: 295 GLDEMAFDLFRSMPCR---ADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTF 351

Query: 353 NTLMISFLQK 362
           N L+ S  QK
Sbjct: 352 NILISSLCQK 361



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 154/349 (44%), Gaps = 30/349 (8%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N V +N+ +KG C+ G   +  +L+ +M    C PN  T  TLI  L +    N  +
Sbjct: 106 RP-NTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQ----NRLV 160

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANTLL 137
           +   E++  M  +G  Y P+V  Y ++I         D    L   M  K   I+ N +L
Sbjct: 161 EYAVEVLEQMQKYG--YMPDVVSYNTIISCFSDQARADDALKLLKSMLCKPDTISFNAVL 218

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CK  +  +A  L+  M+++       T+  L++  C  G+V  AI +F+ M +   M
Sbjct: 219 KCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCM 278

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ +YS LING+ +    E A ++ R M                   + F+ N  + GL
Sbjct: 279 PDIVTYSSLINGFSEQGLDEMAFDLFRSMPCRA---------------DIFSYNATLKGL 323

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C      +  EL   +   +C      FN LI   C+ G+   A +++ ++    +  D+
Sbjct: 324 CMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQMPKYGITPDI 383

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             YN LI+   ++G++      L +M    C  D  ++N+++    + E
Sbjct: 384 FTYNALINGYSEQGRLDDALKFLSTM---PCEPDTISYNSILKGLCRAE 429



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 153/348 (43%), Gaps = 49/348 (14%)

Query: 4   VLGALMAFGSFIRRCYR---PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           + G     G  I    R   P ND TF++LI   C    +  A +++++M  +G  P+V 
Sbjct: 121 IAGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVV 180

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           + +T+I+        +  LKL + M         + KP+   + +++  LCK +      
Sbjct: 181 SYNTIISCFSDQARADDALKLLKSM---------LCKPDTISFNAVLKCLCKAKRWYDAV 231

Query: 121 DLFMEM--KDKGINANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           +L  +M  KD  IN  T       LC+  ++ +A  + ELM +    P I TY+ L+NG+
Sbjct: 232 ELVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGF 291

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI-------- 224
              G   +A  LF SM  +    D+FSY+  + G C     ++A  +  +M+        
Sbjct: 292 SEQGLDEMAFDLFRSMPCRA---DIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNE 348

Query: 225 ---------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
                          +N    ++ +M    + P+ FT N  I+G  + G + + ++   T
Sbjct: 349 VTFNILISSLCQKGLVNRAIDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFLST 408

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           +    CE     +NS+++G C+   ++ A +L  ++  KN   + V +
Sbjct: 409 MP---CEPDTISYNSILKGLCRAERWKDAEKLVTEMLRKNCTPNEVTF 453



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 18/220 (8%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC   +  +A  L+  M++   +P   T+   +  +C  G ++ A+ L + M + G  PD
Sbjct: 17  LCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPD 76

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V  YS L+NG+ ++  V+EA+            K+ N M LC   P T   N  + GLC 
Sbjct: 77  VIIYSTLVNGFSEHGRVDEAL------------KLLNTM-LCR--PNTVCYNAALKGLCI 121

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G   EV EL   +   +C      F++LI   C+  + E A E+  ++     + DVV+
Sbjct: 122 AGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVS 181

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           YN +I     + +      LL SM    C  D  +FN ++
Sbjct: 182 YNTIISCFSDQARADDALKLLKSM---LCKPDTISFNAVL 218



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 49/101 (48%)

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           V P+T+T N  + GLC      +  EL   +  ++C      F + IR  C+ G+ + A 
Sbjct: 3   VAPDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAV 62

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
           EL  ++       DV+ Y+ L++   + G++ +   LL +M
Sbjct: 63  ELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTM 103


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 161/381 (42%), Gaps = 38/381 (9%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  F     R   P N +T+N++I G    G++     L  +M   G +PN  T + L+
Sbjct: 215 AVEVFDEMTERAVLP-NHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLL 273

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +GL R G M  T  L  EM +          P+ F Y  L DGL ++        LF + 
Sbjct: 274 SGLCRAGRMGETSALLDEMASQK------MVPDGFTYSILFDGLSRNGDSKAMLSLFGKS 327

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
              G+             LCK  K+  A  +L+ ++  GL P    Y  L+NGYC  G++
Sbjct: 328 LKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL 387

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------- 230
             A + F  M  +   PD  +Y+ LING CK   +  A ++  EM  NG           
Sbjct: 388 EGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 447

Query: 231 ---------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
                          + +EM+   + P   +    ++  CKNG + E + +   +   + 
Sbjct: 448 IDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDV 507

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
               +++N++I    + G  + A  L  K+    +   +V YN+LI  L  + QI +   
Sbjct: 508 LPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEE 567

Query: 336 LLLSMEENGCALDVDTFNTLM 356
           ++ S+  +    D  ++NTL+
Sbjct: 568 IINSLSNHRLIPDAVSYNTLI 588



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 167/363 (46%), Gaps = 26/363 (7%)

Query: 6   GALMAFGSFIRRCYRPLNDVTF-NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
           GAL            PL  ++  N L++     G   D  +    +A+ G RP+    + 
Sbjct: 106 GALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNK 165

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
            +      G++   +     M+  MG  G    PN F Y  +I G+ +        ++F 
Sbjct: 166 AVQACVAAGDLGEAVG----MLRRMGRDGAP-PPNAFSYNVVIAGMWRAGRGGDAVEVFD 220

Query: 125 EMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           EM ++      I  NT++    K   L     L + M+  GL P   TY  LL+G C  G
Sbjct: 221 EMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAG 280

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
           ++    AL D MA +  +PD F+YS+L +G  +N + +  +++  + + NG         
Sbjct: 281 RMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNG--------- 331

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              V    +TC+I ++GLCK+G V    E+  +L  +       I+N+LI G C+ G  E
Sbjct: 332 ---VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 388

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A   F ++  +++  D + YN LI+ L K  +I     LL+ M++NG    V+TFNTL+
Sbjct: 389 GAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 448

Query: 357 ISF 359
            ++
Sbjct: 449 DAY 451



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 165/362 (45%), Gaps = 32/362 (8%)

Query: 14  FIRRCYR----PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
            +RR  R    P N  ++N +I G    G   DA ++  +M      PN  T +T+I G 
Sbjct: 182 MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 241

Query: 70  RRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
            + G++     L  +MV +G+       KPN   Y  L+ GLC+   + +T  L  EM  
Sbjct: 242 IKGGDLEAGFSLRDQMVCHGL-------KPNAITYNVLLSGLCRAGRMGETSALLDEMAS 294

Query: 129 K-----GINANTLLCKKTKLVEANRLLELM---MQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +     G   + L    ++  ++  +L L    ++ G+    +T + LLNG C  GKV++
Sbjct: 295 QKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSI 354

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           A  +  S+   G +P    Y+ LINGYC+   +E A +             F +MK  ++
Sbjct: 355 AEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFST------------FGQMKSRHI 402

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T N  I+GLCK   +    +L   ++ +     VE FN+LI    + G  E    
Sbjct: 403 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 462

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           + +++    L  +VV+Y  +++A  K G+I +   +L  M       +   +N ++ +++
Sbjct: 463 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 522

Query: 361 QK 362
           + 
Sbjct: 523 EH 524



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 155/345 (44%), Gaps = 38/345 (11%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           + D T + L+ G C +G +  A ++++ +   G  P     +TLI G  +TG +      
Sbjct: 334 IGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFST 393

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL 136
             +M +         KP+   Y +LI+GLCK   +   +DL MEM+D G+N      NTL
Sbjct: 394 FGQMKSRH------IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 447

Query: 137 LCKKTKLVEANR---LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +    +  +  +   +L  M + GL P + +Y  ++N +C  GK+  A+A+ D M  K  
Sbjct: 448 IDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDV 507

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KK 230
           +P+   Y+ +I+ Y ++   ++A  +  +M  NG                        ++
Sbjct: 508 LPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEE 567

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
           I N +    ++P+  + N  I   C  G++ + ++L   +     +  V  ++ LI G  
Sbjct: 568 IINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLG 627

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG-QIKKEN 334
             G       L+ K+   N+V     +NI++ A  K G +IK E+
Sbjct: 628 GAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAED 672



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 142/313 (45%), Gaps = 30/313 (9%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T ++ GA   FG    R  +P + +T+N+LI G C    I +A  L+ +M   G  P V 
Sbjct: 384 TGELEGAFSTFGQMKSRHIKP-DHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVE 442

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           T +TLI    RTG +     +  EM  NG+       KPNV  YGS+++  CK+  + + 
Sbjct: 443 TFNTLIDAYGRTGQLEKCFIVLSEMQENGL-------KPNVVSYGSIVNAFCKNGKIPEA 495

Query: 120 KDLFMEM--KDKGINANTLLCKKTKLVEANR------LLELMMQRGLNPVIFTYTPLLNG 171
             +  +M  KD   NA          VE         L+E M   G++P I TY  L+ G
Sbjct: 496 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 555

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
            C   +++ A  + +S++    +PD  SY+ LI+  C   N+++A+++ + M   G K  
Sbjct: 556 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 615

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                         T +  I GL   G ++E+  L+  +  +N      I N ++    K
Sbjct: 616 VR------------TYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSK 663

Query: 292 FGIFEIASELFNK 304
           +G  EI +E   K
Sbjct: 664 YG-NEIKAEDLRK 675



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 16/211 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++ S++  FC  G I +A  ++  M      PN    + +I      G  +    L 
Sbjct: 475 NVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILV 534

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-----GINANTL 136
           ++M  NG+        P++  Y  LI GLC    + + +++   + +       ++ NTL
Sbjct: 535 EKMKSNGI-------SPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTL 587

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   C +  + +A  L + M + G+   + TY  L++G    G++     L+  M +   
Sbjct: 588 ISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNV 647

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           +P    +++++  Y K  N  +A ++ +EM+
Sbjct: 648 VPSNAIHNIMVEAYSKYGNEIKAEDLRKEML 678


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 149/311 (47%), Gaps = 26/311 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V++N LIKG    G I +A+ + + M   G   + TT    I GL   G +N  L +
Sbjct: 357 VNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGV 416

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--- 138
            QE+ +  G        +V+ Y S+ID LCK R +++  +L  EM   G+  N+ +C   
Sbjct: 417 MQEVESKGGHL------DVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNAL 470

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                + ++L +A+ L+  M + G  P + +Y  L+ G C  GK   A A    M   G 
Sbjct: 471 IGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGL 530

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ +YS+L+ G C++  +E A+ +  + + +G +            P+    NI I G
Sbjct: 531 KPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLE------------PDVMMHNILIHG 578

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LC  G + + M +   +E  NC   +  +N+L+ G  K      A+ ++  +    L  D
Sbjct: 579 LCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPD 638

Query: 314 VVAYNILIHAL 324
           +++YN ++  L
Sbjct: 639 IISYNTILKGL 649



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 191/428 (44%), Gaps = 75/428 (17%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVT-FNSLIKGFCMEGNIRDASQLVKKM-ATFGCRPN 58
           T K+  AL  F     R   P  DVT +N LI GF  E + + A QL  K+       PN
Sbjct: 197 TGKLDDALELFDEMSERRVAP--DVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPN 254

Query: 59  VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ 118
           V T + +I+GL + G ++  LK+   M     +       +++ Y SLI GLC +  VD+
Sbjct: 255 VKTHNIMISGLSKCGRVDDCLKIWDRMKQNERE------KDLYTYSSLIHGLCDEGNVDK 308

Query: 119 TKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQR-GLNPVIF------ 163
            + +F E+ ++      +  NT+L   C+  K+ E+  L  +M QR  +N V +      
Sbjct: 309 AESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRNSVNIVSYNILIKG 368

Query: 164 ---------------------------TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
                                      TY   ++G C+ G VN A+ +   +  KG   D
Sbjct: 369 LLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLD 428

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------KIFNEMKLCNV----- 240
           V++Y+ +I+  CK   +EEA N+ +EM  +G +            +  + +L +      
Sbjct: 429 VYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMR 488

Query: 241 -------VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                  +P   + NI I GLC+ G   E       +  +  +  ++ ++ L+ G C+  
Sbjct: 489 GMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDR 548

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E+A EL+++     L  DV+ +NILIH L   G++     ++ +ME   C  ++ T+N
Sbjct: 549 KIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYN 608

Query: 354 TLMISFLQ 361
           TLM  + +
Sbjct: 609 TLMEGYFK 616



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 161/367 (43%), Gaps = 48/367 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++SLI G C EGN+  A  +  ++       +V T +T++ G  R G +  +L+L + M
Sbjct: 292 TYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIM 351

Query: 86  --------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLCKDRLVD 117
                         + G+ + G I              Y  +   YG  I GLC +  V+
Sbjct: 352 EQRNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVN 411

Query: 118 QTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           +   +  E++ KG + +          LCKK +L EA+ L++ M + G+         L+
Sbjct: 412 KALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALI 471

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
            G     +++ A  L   M + G +P V SY++LI G C+     EA    +EM+ NG K
Sbjct: 472 GGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLK 531

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                       P+  T +I + GLC++  +   +EL+     S  E  V + N LI G 
Sbjct: 532 ------------PDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGL 579

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C  G  + A  +   +  +N  A++V YN L+    K     +   +   M + G   D+
Sbjct: 580 CSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDI 639

Query: 350 DTFNTLM 356
            ++NT++
Sbjct: 640 ISYNTIL 646



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 137/273 (50%), Gaps = 20/273 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANR 148
           +P +  Y +L++   + +   + + LF   +  G+  N         + CKK +  +A  
Sbjct: 111 EPGIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARG 170

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
            L  M + G  P +F+Y+ ++N     GK++ A+ LFD M+ +   PDV  Y++LI+G+ 
Sbjct: 171 FLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFL 230

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K  + + AM +  +++ +            +V P   T NI I GL K G V + ++++ 
Sbjct: 231 KEKDHKMAMQLWDKLLEDS-----------SVYPNVKTHNIMISGLSKCGRVDDCLKIWD 279

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            ++ +  E  +  ++SLI G C  G  + A  +FN+L  +    DVV YN ++    + G
Sbjct: 280 RMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCG 339

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           +IK+   L   ME+   ++++ ++N L+   L+
Sbjct: 340 KIKESLELWRIMEQRN-SVNIVSYNILIKGLLE 371



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 147/331 (44%), Gaps = 45/331 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N LIK  C +     A   +  M   G +P+V +  T+I  L +TG ++  L+L  EM
Sbjct: 151 TYNVLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEM 210

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
                       P+V CY  LIDG  K++       + M++ DK                
Sbjct: 211 SERR------VAPDVTCYNILIDGFLKEK----DHKMAMQLWDK---------------- 244

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
                 L+    + P + T+  +++G    G+V+  + ++D M +     D+++YS LI+
Sbjct: 245 ------LLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIH 298

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G C   NV++A            + +FNE+       +  T N  + G C+ G + E +E
Sbjct: 299 GLCDEGNVDKA------------ESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLE 346

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           L+  +E  N    V  +N LI+G  + G  + A+ ++  +  K   AD   Y I IH L 
Sbjct: 347 LWRIMEQRNSVNIVS-YNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLC 405

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             G + K   ++  +E  G  LDV  + +++
Sbjct: 406 VNGYVNKALGVMQEVESKGGHLDVYAYASII 436


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 149/321 (46%), Gaps = 26/321 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N ++ G C EG + DA + ++ + ++G  PN  + + ++ GL          KL +E
Sbjct: 17  ITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEKLMEE 76

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M +          PNV  +  LI  LC+  LV+   ++  ++   G   N+L        
Sbjct: 77  MAHKG------CPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHA 130

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+ +A   +ELM+ RG  P I +Y  LL   C  G+V+VAI L   +  KG  P 
Sbjct: 131 FCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPV 190

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + SY+ +I+G  K    +EA+ +  EMI  G +            P+  T      GLC+
Sbjct: 191 LISYNTVIDGLTKAGKTKEALELLDEMISKGLQ------------PDIITYTTIASGLCR 238

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
              + E +  F  ++       V ++N+++ G CK      A +LF+ +     + +   
Sbjct: 239 EDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNEST 298

Query: 317 YNILIHALGKEGQIKKENYLL 337
           Y IL+  L  EG +K+   LL
Sbjct: 299 YTILVEGLAYEGLVKEARDLL 319



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 143/320 (44%), Gaps = 26/320 (8%)

Query: 45  QLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYG 104
           +L+ +M   GC P++ T + ++ G+ + G ++  +    E +  +  +GG  +PN   Y 
Sbjct: 2   KLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAM----EFLENLPSYGG--EPNTVSYN 55

Query: 105 SLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQR 156
            ++ GL      +  + L  EM  KG   N        + LC++  +  A  +LE + + 
Sbjct: 56  IVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKY 115

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G  P   +Y PLL+ +C   K++ A+A  + M  +G  PD+ SY+ L+   C+N  V+ A
Sbjct: 116 GCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVA 175

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
           ++            + +++K     P   + N  IDGL K G   E +EL   +     +
Sbjct: 176 ID------------LLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQ 223

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             +  + ++  G C+    E A   F K+    +   VV YN ++  L K  +      L
Sbjct: 224 PDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDL 283

Query: 337 LLSMEENGCALDVDTFNTLM 356
              M  NGC  +  T+  L+
Sbjct: 284 FSYMISNGCMPNESTYTILV 303



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 122/258 (47%), Gaps = 26/258 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VTFN LI   C  G +  A ++++++  +GC PN  + + L+    +   M+  + 
Sbjct: 83  PPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMA 142

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANT 135
             + MV+      G Y P++  Y +L+  LC++  VD   DL  ++K KG     I+ NT
Sbjct: 143 FVELMVS-----RGCY-PDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNT 196

Query: 136 L---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           +   L K  K  EA  LL+ M+ +GL P I TYT + +G C   K+  AI  F  +   G
Sbjct: 197 VIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMG 256

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             P V  Y+ ++ G CK      A+++   MI NG             +P   T  I ++
Sbjct: 257 IRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNG------------CMPNESTYTILVE 304

Query: 253 GLCKNGHVLEVMELFPTL 270
           GL   G V E  +L   L
Sbjct: 305 GLAYEGLVKEARDLLGQL 322



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 126/273 (46%), Gaps = 20/273 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P++  Y  +++G+C++  VD   +    +   G   NT+        L    +  +A +L
Sbjct: 14  PDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEKL 73

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           +E M  +G  P + T+  L++  C  G V  A+ + + + + G  P+  SY+ L++ +CK
Sbjct: 74  MEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCK 133

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
              +++AM     M+  G              P+  + N  +  LC+NG V   ++L   
Sbjct: 134 QKKMDKAMAFVELMVSRG------------CYPDIVSYNTLLTALCRNGEVDVAIDLLHQ 181

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           L+   C   +  +N++I G  K G  + A EL +++  K L  D++ Y  +   L +E +
Sbjct: 182 LKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDK 241

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           I++       +++ G    V  +N +++   ++
Sbjct: 242 IEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKR 274



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 16/214 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL- 81
           N +++N L+  FC +  +  A   V+ M + GC P++ + +TL+T L R G +++ + L 
Sbjct: 120 NSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLL 179

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
           HQ  + G G       P +  Y ++IDGL K     +  +L  EM  KG+  + +     
Sbjct: 180 HQ--LKGKG-----CSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTI 232

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ K+ EA R    +   G+ P +  Y  +L G C   + + AI LF  M   G 
Sbjct: 233 ASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGC 292

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           MP+  +Y++L+ G      V+EA ++  ++   G
Sbjct: 293 MPNESTYTILVEGLAYEGLVKEARDLLGQLCSRG 326



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 18/207 (8%)

Query: 2   SKVLGALMAFGSFI--RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV 59
            K +   MAF   +  R CY  +  V++N+L+   C  G +  A  L+ ++   GC P +
Sbjct: 134 QKKMDKAMAFVELMVSRGCYPDI--VSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVL 191

Query: 60  TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
            + +T+I GL + G     L+L  EM++      G+ +P++  Y ++  GLC++  +++ 
Sbjct: 192 ISYNTVIDGLTKAGKTKEALELLDEMISK-----GL-QPDIITYTTIASGLCREDKIEEA 245

Query: 120 KDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
              F +++D GI    +L        CK+ +   A  L   M+  G  P   TYT L+ G
Sbjct: 246 IRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEG 305

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVF 198
               G V  A  L   +  +G +   F
Sbjct: 306 LAYEGLVKEARDLLGQLCSRGVVNKKF 332



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 69/134 (51%)

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
           K+ +EM+     P+  T N+ ++G+C+ G V + ME    L     E     +N +++G 
Sbjct: 2   KLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGL 61

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
                +E A +L  +++ K    +VV +N+LI  L + G ++    +L  + + GC  + 
Sbjct: 62  FTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNS 121

Query: 350 DTFNTLMISFLQKE 363
            ++N L+ +F +++
Sbjct: 122 LSYNPLLHAFCKQK 135



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           M+L   +    C   +  +N ++ G C+ G  + A E    L       + V+YNI++  
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           L    + +    L+  M   GC  +V TFN ++ISFL
Sbjct: 61  LFTAERWEDAEKLMEEMAHKGCPPNVVTFN-MLISFL 96


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 176/375 (46%), Gaps = 37/375 (9%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +VL AL A GS        L+    N +I   C +G + +  ++++K+  FGC  ++ + 
Sbjct: 172 RVLEALHAKGST-------LDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSY 224

Query: 63  DTLITGL---RRTGN----MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL 115
           + ++ GL   +R G+    M+  +K+H E ++ M   G    P++  Y ++IDG+CK+  
Sbjct: 225 NAVLKGLCAAKRWGDVEELMDEMVKVH-EALSQMAQHG--CTPDIRMYATIIDGICKEGH 281

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
            +   ++   M   G+  N +        +C   +  +A  LL  M Q+       T+  
Sbjct: 282 HEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNI 341

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           L++ +C  G V+  I L + M   G MPDV +Y+ +ING+CK   ++EA+          
Sbjct: 342 LVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAV---------- 391

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
              +   M  C   P T +  I + GLC     ++  EL   +    C      FN++I 
Sbjct: 392 --MLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIIN 449

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
             CK G+ E A EL  ++       D+++Y+ +I  LGK G+ ++   LL  M   G   
Sbjct: 450 FLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITP 509

Query: 348 DVDTFNTLMISFLQK 362
           +V T++++  +  ++
Sbjct: 510 NVITYSSMAFALARE 524



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 165/373 (44%), Gaps = 47/373 (12%)

Query: 25  VTFNSLIKGFCMEGNIRDASQL----------VKKMATFGCRPNVTTCDTLITGLRRTGN 74
           V++N+++KG C      D  +L          + +MA  GC P++    T+I G+ + G+
Sbjct: 222 VSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGH 281

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG---- 130
                ++  E+++ M  +G   KPNV CY +++ G+C     ++ ++L  EM  K     
Sbjct: 282 H----EVANEILSRMPSYG--LKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLD 335

Query: 131 -INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +  N L+   C+   +     LLE M++ G  P + TYT ++NG+C  G ++ A+ L  
Sbjct: 336 DVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 395

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-------FKKIFN------ 233
           +M   G  P+  SY++++ G C      +A  +   MI  G       F  I N      
Sbjct: 396 NMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKG 455

Query: 234 ----------EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
                     +M +    P+  + +  IDGL K G   E +EL   +        V  ++
Sbjct: 456 LVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYS 515

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           S+     + G  +   ++F+ +    + +D V YN +I +L K  +       L  M  N
Sbjct: 516 SMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSN 575

Query: 344 GCALDVDTFNTLM 356
           GC  +  T+  L+
Sbjct: 576 GCMPNESTYTALI 588



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 152/350 (43%), Gaps = 53/350 (15%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL----RRTGNMNLTLKLH 82
           + ++I G C EG+   A++++ +M ++G +PNV   +T++ G+    R      L  +++
Sbjct: 269 YATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMY 328

Query: 83  Q---------------------------EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL 115
           Q                           E++  M + G +  P+V  Y ++I+G CK+ L
Sbjct: 329 QKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCM--PDVITYTTVINGFCKEGL 386

Query: 116 VDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
           +D+   L   M   G   NT+        LC   + V+A  L+  M+Q+G  P   T+  
Sbjct: 387 IDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNT 446

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           ++N  C  G V  AI L   M   G  PD+ SYS +I+G  K    EEA+ +   MI  G
Sbjct: 447 IINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKG 506

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                       + P   T +     L + G + +V+++F  ++ +       ++N++I 
Sbjct: 507 ------------ITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVIS 554

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
             CK    ++A +    +     + +   Y  LI  L  EG + +   LL
Sbjct: 555 SLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLL 604



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 140/300 (46%), Gaps = 28/300 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PL+DVTFN L+  FC  G +    +L+++M   GC P+V T  T+I G  + G ++  + 
Sbjct: 333 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVM 392

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL--- 136
           L + M +         KPN   Y  ++ GLC  +R VD  ++L   M  +G   N +   
Sbjct: 393 LLKNMPSCG------CKPNTISYTIVLKGLCSTERWVD-AEELMSRMIQQGCLPNPVTFN 445

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCKK  + +A  LL+ M+  G NP + +Y+ +++G    GK   A+ L + M  K
Sbjct: 446 TIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINK 505

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+V +YS +            A  ++RE  ++   ++F+ ++   +  +    N  I
Sbjct: 506 GITPNVITYSSM------------AFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVI 553

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
             LCK       ++    +  + C      + +LI+G    G+   A +L ++L  +  V
Sbjct: 554 SSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSELCSRRAV 613



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 144/347 (41%), Gaps = 28/347 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            ++LI+  C+ G   DA   V+ +   G    V   + ++ G  R G +    +L   + 
Sbjct: 55  LSALIRSLCVAGRTADA---VRALDAAGNAAGVVDYNAMVAGYCRVGQVEAARRLAAAVP 111

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------C 138
                      PN + Y  ++ GLC    +     +  EM  +       +        C
Sbjct: 112 ---------VPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESAC 162

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +      A R+LE +  +G          ++N  C  G V+  + +   +   G   D+ 
Sbjct: 163 RSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIV 222

Query: 199 SYSVLINGYC---KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           SY+ ++ G C   +  +VEE M+   EM+     +  ++M      P+       IDG+C
Sbjct: 223 SYNAVLKGLCAAKRWGDVEELMD---EMV--KVHEALSQMAQHGCTPDIRMYATIIDGIC 277

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K GH     E+   +     +  V  +N++++G C    +E A EL  ++  KN   D V
Sbjct: 278 KEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDV 337

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            +NIL+    + G + +   LL  M E+GC  DV T+ T++  F ++
Sbjct: 338 TFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKE 384


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 159/328 (48%), Gaps = 28/328 (8%)

Query: 43  ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVF 101
           A    K M   G  P+V T + +I  L R G++     L +EM   G+       +P++ 
Sbjct: 235 ALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGL-------RPDIV 287

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELM 153
            Y SLIDG  K  ++     +F EMKD G     I  N+L+   CK  ++ +A   L  M
Sbjct: 288 TYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGM 347

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
            QRGL P + TY+ L++ +C  G +  A   F  M R G  P+ F+Y+ LI+  CK  ++
Sbjct: 348 KQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDL 407

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
            EA  +  EM   G           N+V  T+T    +DGLC++G + E  ELF  L  +
Sbjct: 408 NEAFKLESEMQQAGVN--------LNIV--TYTA--LLDGLCEDGRMREAEELFGALLKA 455

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
              L  +I+ SL  G  K  + E A ++  +++ KNL  D++ Y   I  L ++ +I+  
Sbjct: 456 GWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDS 515

Query: 334 NYLLLSMEENGCALDVDTFNTLMISFLQ 361
             ++  M + G   +   + TL+ ++ +
Sbjct: 516 MAVIREMMDCGLTANSYIYTTLIDAYFK 543



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 143/302 (47%), Gaps = 26/302 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN VT+ +L+ G C +G +R+A +L   +   G   N     +L  G  +   M   + +
Sbjct: 424 LNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDI 483

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--- 138
            +EM           KP++  YG+ I GLC+   ++ +  +  EM D G+ AN+ +    
Sbjct: 484 LEEMNKKN------LKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTL 537

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  K  EA  LL+ M   G+   + TY  L++G C +G V  A+  FD M R G 
Sbjct: 538 IDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGL 597

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P++  Y+ LI+G CKN  +EEA            K +FNEM    + P+       IDG
Sbjct: 598 QPNIMIYTALIDGLCKNDCLEEA------------KNLFNEMLDKGISPDKLVYTSLIDG 645

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             K+G+  E + L   +     EL +  + SLI G  ++G  ++A  L +++  K ++ D
Sbjct: 646 NMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPD 705

Query: 314 VV 315
            V
Sbjct: 706 QV 707



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 163/367 (44%), Gaps = 39/367 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+NSLI  FC    I  A + +  M   G +PNV T  TLI    + G +    K   +
Sbjct: 322 ITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVD 381

Query: 85  MVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           M+  G+       +PN F Y SLID  CK   +++   L  EM+  G+N N +       
Sbjct: 382 MIRVGL-------QPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLD 434

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LC+  ++ EA  L   +++ G       YT L +GY     +  A+ + + M +K   P
Sbjct: 435 GLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKP 494

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIFNEMKLCNVV 241
           D+  Y   I G C+   +E++M V REM              +++ + K+    +  N++
Sbjct: 495 DLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLL 554

Query: 242 PE---------TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            E           T  + IDGLCK G V + +  F  +  +  +  + I+ +LI G CK 
Sbjct: 555 QEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKN 614

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              E A  LFN++  K +  D + Y  LI    K G   +   L   M E G  LD+  +
Sbjct: 615 DCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAY 674

Query: 353 NTLMISF 359
            +L+  F
Sbjct: 675 TSLIWGF 681



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 167/393 (42%), Gaps = 64/393 (16%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N +I     EG++  A  L ++M   G RP++ T ++LI G  + G +   + + +EM
Sbjct: 253 TYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEM 312

Query: 86  -------------------------------VNGMGDFGGIYKPNVFCYGSLIDGLCKDR 114
                                          ++GM   G   +PNV  Y +LID  CK  
Sbjct: 313 KDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRG--LQPNVVTYSTLIDAFCKAG 370

Query: 115 LVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYT 166
           ++ +    F++M   G+  N           CK   L EA +L   M Q G+N  I TYT
Sbjct: 371 MLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYT 430

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--- 223
            LL+G C  G++  A  LF ++ + G+  +   Y+ L +GY K   +E+AM++  EM   
Sbjct: 431 ALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKK 490

Query: 224 ------ILNGFK--------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
                 +L G K               +  EM  C +   ++     ID   K G   E 
Sbjct: 491 NLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEA 550

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           + L   ++    ++ V  +  LI G CK G+ + A   F+ ++   L  +++ Y  LI  
Sbjct: 551 VNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDG 610

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           L K   +++   L   M + G + D   + +L+
Sbjct: 611 LCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLI 643



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 157/370 (42%), Gaps = 50/370 (13%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           +R  +P N VT+++LI  FC  G + +A++    M   G +PN  T  +LI    + G++
Sbjct: 349 QRGLQP-NVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDL 407

Query: 76  NLTLKLHQEM---------------VNGMGD----------FGGIYKP----NVFCYGSL 106
           N   KL  EM               ++G+ +          FG + K     N   Y SL
Sbjct: 408 NEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSL 467

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGL 158
             G  K +++++  D+  EM  K +  + LL        C++ ++ ++  ++  MM  GL
Sbjct: 468 FHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGL 527

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
               + YT L++ Y  VGK   A+ L   M   G    V +Y VLI+G CK   V++A+ 
Sbjct: 528 TANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVR 587

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
               M  NG +            P        IDGLCKN  + E   LF  +        
Sbjct: 588 YFDHMTRNGLQ------------PNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPD 635

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
             ++ SLI G  K G    A  L N++    +  D+ AY  LI    + GQ++    LL 
Sbjct: 636 KLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLD 695

Query: 339 SMEENGCALD 348
            M   G   D
Sbjct: 696 EMLRKGIIPD 705



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 150/340 (44%), Gaps = 49/340 (14%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           D  FN L+      G + +A Q   KM  F   P V +C+ L+  L ++    L L   +
Sbjct: 185 DTLFNVLVD----LGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFK 240

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143
           +MV       G+  P+VF Y  +I  L ++  ++  + LF EMK K              
Sbjct: 241 DMV-----VAGL-SPSVFTYNMVIGCLAREGDLEAARSLFEEMKAK-------------- 280

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
                        GL P I TY  L++GY  VG +  A+++F+ M   G  PDV +Y+ L
Sbjct: 281 -------------GLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSL 327

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           IN +CK   + +A        L+G       MK   + P   T +  ID  CK G +LE 
Sbjct: 328 INCFCKFERIPQAFEY-----LHG-------MKQRGLQPNVVTYSTLIDAFCKAGMLLEA 375

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
            + F  +     +     + SLI   CK G    A +L +++    +  ++V Y  L+  
Sbjct: 376 NKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDG 435

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           L ++G++++   L  ++ + G  L+   + +L   +++ +
Sbjct: 436 LCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAK 475



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 51/224 (22%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   + +LI  +   G   +A  L+++M   G +  V T   LI GL + G +   ++  
Sbjct: 530 NSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYF 589

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             M  NG+       +PN+  Y +LIDGLCK+  +++ K+LF EM DKGI+ + L     
Sbjct: 590 DHMTRNGL-------QPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSL 642

Query: 137 ----------------------------LCKKTKLVE----------ANRLLELMMQRGL 158
                                       LC  T L+           A  LL+ M+++G+
Sbjct: 643 IDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGI 702

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
            P       LL  Y  +G +N A+AL D MAR+G +      +V
Sbjct: 703 IPDQVLCICLLRKYYELGDINEALALHDDMARRGLISGTIDITV 746


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 167/370 (45%), Gaps = 30/370 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A       I+R + P ++ T   ++   C  G +  A    +KM   G +PN+   
Sbjct: 255 KIQEADRWLSGMIQRGFIP-DNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINF 313

Query: 63  DTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +LI GL + G++    ++ +EMV NG       +KPNV+ + +LIDGLCK    ++   
Sbjct: 314 TSLIDGLCKKGSIKQAFEMLEEMVRNG-------WKPNVYTHTALIDGLCKRGWTEKAFR 366

Query: 122 LFMEMKDKGI---NANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           LF+++    I   N +T        CK+ KL  A  L   M ++GL P + TYT L+NG+
Sbjct: 367 LFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGH 426

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  G  + A  L + M  +GF P++++Y+ +I+  CK     EA             ++ 
Sbjct: 427 CKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAY------------ELL 474

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           N+   C +  +  T  I I   CK   + + +  F  +  +  E  + + N LI   C+ 
Sbjct: 475 NKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQ 534

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              + +  LF  +    LV     Y  +I    KEG          +M+ +GC  D  T+
Sbjct: 535 KKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTY 594

Query: 353 NTLMISFLQK 362
            +L+    +K
Sbjct: 595 GSLISGLCKK 604



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 149/354 (42%), Gaps = 65/354 (18%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N  T+ S+I G+C E  +  A  L  +M   G  PNV T  TLI G  + GN +  
Sbjct: 377 YKP-NVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRA 435

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL---------------- 122
                E++N M D G  ++PN++ Y ++ID LCK     +  +L                
Sbjct: 436 Y----ELMNLMDDEG--FRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTY 489

Query: 123 -------------------FMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQ 155
                              F  M   G  A+  L        C++ K+ E+ RL +L++ 
Sbjct: 490 TILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVS 549

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
            GL P   TYT +++GYC  G  ++A+  F +M R G +PD F+Y  LI+G CK   V+E
Sbjct: 550 LGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDE 609

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A  +   MI  G              P   T        CK       M +   LE  + 
Sbjct: 610 ACKLYEAMIDRGLS------------PPEVTRVTLAYEYCKRNDSASAMIV---LEPLDK 654

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +L++    +L+R  C      +A+  F KL  K+  AD V       A  + G+
Sbjct: 655 KLWIRTVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSESGK 708



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 151/342 (44%), Gaps = 46/342 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  +F  ++ G   +G I++A + +  M   G  P+  TC  +++ L   G +N  +   
Sbjct: 239 DSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYF 298

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
           ++M+    D G  +KPN+  + SLIDGLCK                           K  
Sbjct: 299 RKMI----DLG--FKPNLINFTSLIDGLCK---------------------------KGS 325

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-FMPDVFSYS 201
           + +A  +LE M++ G  P ++T+T L++G C  G    A  LF  + R   + P+V +Y+
Sbjct: 326 IKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYT 385

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            +I GYCK            E  LN  + +F+ MK   + P   T    I+G CK G+  
Sbjct: 386 SMIGGYCK------------EDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFD 433

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
              EL   ++       +  +N++I   CK      A EL NK     L AD V Y ILI
Sbjct: 434 RAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILI 493

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               K+  IK+       M + G   D+   N L+ +F +++
Sbjct: 494 QEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQK 535



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 130/259 (50%), Gaps = 25/259 (9%)

Query: 115 LVDQTKDLFMEMKDKGINANT-------LLC-KKTKLVEANRLLELMMQRGLNPVIFTYT 166
           L+D  +++F EM  +G+  ++       + C +  K+ EA+R L  M+QRG  P   T T
Sbjct: 220 LIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCT 279

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            +L+  C  G VN AI  F  M   GF P++ +++ LI+G CK  ++++A  +  EM+ N
Sbjct: 280 LILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRN 339

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF---VEIFN 283
           G+K            P  +T    IDGLCK G   +   LF  L++   +++   V  + 
Sbjct: 340 GWK------------PNVYTHTALIDGLCKRGWTEKAFRLF--LKLVRSDIYKPNVHTYT 385

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           S+I G CK      A  LF+++  + L  +V  Y  LI+   K G   +   L+  M++ 
Sbjct: 386 SMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDE 445

Query: 344 GCALDVDTFNTLMISFLQK 362
           G   ++ T+N ++ S  +K
Sbjct: 446 GFRPNIYTYNAVIDSLCKK 464



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 24/239 (10%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           +L EA  ++  M  +GL+P   T   +L      G ++ A  +FD M+ +G  PD  S+ 
Sbjct: 185 RLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFK 244

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGF---------------------KKIFNEMKLCNV 240
           +++ G  ++  ++EA      MI  GF                     + I+   K+ ++
Sbjct: 245 LMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDL 304

Query: 241 --VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P        IDGLCK G + +  E+   +  +  +  V    +LI G CK G  E A
Sbjct: 305 GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKA 364

Query: 299 SELFNKLSCKNLV-ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             LF KL   ++   +V  Y  +I    KE ++ +   L   M+E G   +V+T+ TL+
Sbjct: 365 FRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLI 423


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 154/349 (44%), Gaps = 33/349 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + S+I G+C  G +  A ++ + M   GCRPN  T  +LI GL +        KLH
Sbjct: 368 NVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQ------KLH 421

Query: 83  QEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT----- 135
           + M  +  M + G    P V  Y +LI G CK    D    LF  M+  G+  +      
Sbjct: 422 KAMALITKMQEDG--ITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNV 479

Query: 136 ---LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  +  EA   L   +++G+     TYT L++G+   G  + A  L + M  +G
Sbjct: 480 LTHALCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEG 536

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              D ++YSVL+   CK   + EA+++  +M L+G K        CN+V  T    I I 
Sbjct: 537 CKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVK--------CNIVAYT----IIIS 584

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            + K G       +F  +  S  +     +   I   CK G  E A  L  ++    +  
Sbjct: 585 EMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAP 644

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           DVV YN+ I+  G  G + +    L  M +  C  +  T+  L+  FL+
Sbjct: 645 DVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLK 693



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 163/360 (45%), Gaps = 34/360 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TF ++I G+C    I DA ++   M +  C+ ++     LI  L +        K  +E
Sbjct: 300 ITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIK----KCRFKEAKE 355

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            V+ M  F     PNV  Y S+IDG CK   V    ++F  M+ +G   N          
Sbjct: 356 TVSEM--FANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYG 413

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           L +  KL +A  L+  M + G+ P + TYT L+ G C   + + A  LF+ M + G  PD
Sbjct: 414 LIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPD 473

Query: 197 VFSYSVLINGYCKNFNVEEAMN-----------VSREMILNGFKKIFNE-------MKLC 238
             +Y+VL +  CK+   EEA +           V+   +++GF K  N         K+ 
Sbjct: 474 EQAYNVLTHALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMV 533

Query: 239 N--VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
           N     +++T ++ +  LCK   + E + +   + +S  +  +  +  +I    K G  +
Sbjct: 534 NEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHD 593

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            A  +FN++           Y + I +  K GQI++  +L+  ME +G A DV T+N  +
Sbjct: 594 HAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFI 653



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 153/347 (44%), Gaps = 32/347 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N++I G+C  G ++DA  +   M   GC P+  T + LI GL           L+  +
Sbjct: 232 TYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCGEKPDEAEELLNDAI 291

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ---------TKDLFMEMKDKGINANTL 136
           V G       + P V  + ++I+G CK   +D          + +  ++++  G+  N L
Sbjct: 292 VRG-------FTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVL 344

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           + KK +  EA   +  M   GL P +  YT +++GYC VGKV  A+ +F  M  +G  P+
Sbjct: 345 I-KKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPN 403

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
            ++YS LI G  ++  + +AM +  +M  +G            + P   T    I G CK
Sbjct: 404 AWTYSSLIYGLIQDQKLHKAMALITKMQEDG------------ITPGVITYTTLIQGQCK 451

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
                    LF  +E +      + +N L    CK G    A E ++ L  K +V   V 
Sbjct: 452 KHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSG---RAEEAYSFLVRKGVVLTKVT 508

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           Y  L+    K G       L+  M   GC  D  T++ L+ +  +++
Sbjct: 509 YTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQK 555



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 147/341 (43%), Gaps = 27/341 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ ++  LI+G C    +R+A  L+  M   GC  N+ T   LI GL + G ++   ++ 
Sbjct: 159 NEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVL 218

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM        G+  P+V+ Y ++IDG CK   +     +   M+  G N +        
Sbjct: 219 EEM-----PLRGVV-PSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILI 272

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC + K  EA  LL   + RG  P + T+T ++NGYC   +++ A+ +  SM      
Sbjct: 273 YGLCGE-KPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCK 331

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            D+ +Y VLIN   K    +EA     EM  NG            + P        IDG 
Sbjct: 332 LDLQAYGVLINVLIKKCRFKEAKETVSEMFANG------------LAPNVVIYTSIIDGY 379

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G V   +E+F  +E   C      ++SLI G  +      A  L  K+    +   V
Sbjct: 380 CKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGV 439

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           + Y  LI    K+ +      L   ME+NG   D   +N L
Sbjct: 440 ITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVL 480



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 146/346 (42%), Gaps = 23/346 (6%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           SF+ R    L  VT+ SL+ GF   GN   A+ L++KM   GC+ +  T   L+  L + 
Sbjct: 495 SFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQ 554

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
             +N  L +  +M        G+ K N+  Y  +I  + K+   D  K +F EM   G  
Sbjct: 555 KKLNEALSILDQMT-----LSGV-KCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHK 608

Query: 133 AN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
            +        +  CK  ++ EA  L+  M + G+ P + TY   +NG   +G ++ A + 
Sbjct: 609 PSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFST 668

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----KIFNEMKLCN 239
              M      P+ ++Y +L+  + K  ++ +A  V    + N  +     ++   M    
Sbjct: 669 LKRMIDASCEPNYWTYWILLKHFLK-MSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHG 727

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
           + P   T +  I G CK   + E   LF  +   +     EI+  LI+ CC   +F  A 
Sbjct: 728 LNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAV 787

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL---LLSMEE 342
                +        + +Y+ LI  L  EG   K   L   LL ME+
Sbjct: 788 SFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDLLGMED 833



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 119/249 (47%), Gaps = 22/249 (8%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+   + EA  LL +M+Q G +  + TYT L+ G C  G+++ A  + + M  +G +P 
Sbjct: 170 LCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPS 229

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNG----------------------FKKIFNE 234
           V++Y+ +I+GYCK+  +++A+ +   M  NG                       +++ N+
Sbjct: 230 VWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCGEKPDEAEELLND 289

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
             +    P   T    I+G CK   + + + +  ++  SNC+L ++ +  LI    K   
Sbjct: 290 AIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCR 349

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           F+ A E  +++    L  +VV Y  +I    K G++     +   ME  GC  +  T+++
Sbjct: 350 FKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSS 409

Query: 355 LMISFLQKE 363
           L+   +Q +
Sbjct: 410 LIYGLIQDQ 418



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 137/344 (39%), Gaps = 66/344 (19%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   I   ++P +  T+   I  +C  G I +A  L+ +M   G  P+V T +  I G  
Sbjct: 599 FNEMISSGHKP-SATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCG 657

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
             G M+      + M++   +      PN + Y  L+    K  LVD          D  
Sbjct: 658 HMGYMDRAFSTLKRMIDASCE------PNYWTYWILLKHFLKMSLVDA------HYVDTS 705

Query: 131 INANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
              N +     +L    +LLE M++ GLNP   TY+ ++ G+C   ++  A  LFD M  
Sbjct: 706 GMWNWI-----ELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRG 760

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
           K   P+   Y++LI   C      +A++   +MI  GF+                     
Sbjct: 761 KDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQ--------------------- 799

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF-NKLSCKN 309
                            P LE          ++ LI G C  G ++ A  LF + L  ++
Sbjct: 800 -----------------PHLE---------SYHYLIVGLCDEGDYDKAKSLFCDLLGMED 833

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
              + VA+ IL   L K G +   + LL +ME   C +D +T++
Sbjct: 834 YNHNEVAWKILNDGLLKAGHVDFCSQLLSAMENRHCQIDSETYS 877



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 13/220 (5%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L +A  LL +M   G     ++YT L+ G C    V  A+ L   M + G   ++ +Y++
Sbjct: 141 LRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTL 200

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI G CK            E  ++G +++  EM L  VVP  +T N  IDG CK+G + +
Sbjct: 201 LIKGLCK------------EGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKD 248

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
            + +   +E + C      +N LI G C     E A EL N    +     V+ +  +I+
Sbjct: 249 ALGIKALMERNGCNPDDWTYNILIYGLCGEKPDE-AEELLNDAIVRGFTPTVITFTNIIN 307

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
              K  +I     +  SM  + C LD+  +  L+   ++K
Sbjct: 308 GYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKK 347


>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
          Length = 595

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 155/342 (45%), Gaps = 24/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N L   FC  G+I  A ++V +M   G  PNV T +T+I GL R G +   L+  
Sbjct: 239 NAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEFF 298

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--CKK 140
           +E      +  G    N   Y +L         VD   +LF EM D G   + ++     
Sbjct: 299 REKRTVWPEARG----NAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMI 354

Query: 141 TKLVEANRLLEL------MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           + L +A RLL+       M + G       Y  L+ G+C   K++ A  L + M   G  
Sbjct: 355 SGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQ 414

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV++Y+ L++G CK  +      +   MI +G +            P   T    + G 
Sbjct: 415 PDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQ------------PSVVTFGTLVHGY 462

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G   E + +F +++ +  +    I+N+LI   CK    ++A +LF+++  KN+ A+V
Sbjct: 463 CKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANV 522

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             YN L+  L  +   +K   L+  M E  C  +  T + LM
Sbjct: 523 TTYNALLKGLQDKKMAEKAFELMDRMREERCTPNYVTVDVLM 564



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 169/416 (40%), Gaps = 79/416 (18%)

Query: 21  PLNDVT-FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           P  D++ FNSL+      GN+R  ++L   M     +P+V T   L+ GL ++G++   L
Sbjct: 127 PAPDISIFNSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDAL 186

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGI-----NA 133
           K+    ++ M   G    P++    +++DGLCK  RL  Q   +F++ + + +     NA
Sbjct: 187 KV----LDRMSSPGSDVCPDIAILNTVVDGLCKIGRL--QQAIIFVDERMRHVHGCAPNA 240

Query: 134 NT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK---------- 177
            T        C+   +  A +++  M + G+ P + T   ++ G C VG+          
Sbjct: 241 VTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEFFRE 300

Query: 178 ---------------------------VNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210
                                      V++A+ LF  MA  G  PD   Y  +I+G  + 
Sbjct: 301 KRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQA 360

Query: 211 FNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFTC 247
             + +A   +  M   GFK                       ++  EMK   + P+ +T 
Sbjct: 361 GRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTY 420

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
           N  + GLCK G    V EL   +    C+  V  F +L+ G CK G  + A  +F  +  
Sbjct: 421 NTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDE 480

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             +  + V YN LI  L K  ++     L   M E     +V T+N L+     K+
Sbjct: 481 ARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQDKK 536



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 167/396 (42%), Gaps = 47/396 (11%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T   L +L +  +  R    P + +  + L++ F        A  L   +A+    P+++
Sbjct: 77  TPASLASLHSLAA--RHRIPPPSALLLSKLVRRFSSPAEA--AGFLRDSLASGAPAPDIS 132

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
             ++L+T L R GN    L+   E+   M D     KP+V  YG L++GLCK   V    
Sbjct: 133 IFNSLLTALGRAGN----LRGMTELFTSMRD--ASVKPDVVTYGILLNGLCKSGHVGDAL 186

Query: 121 DLFMEMKDKGINA-------NTL---LCKKTKLVEANRLLELMMQ--RGLNPVIFTYTPL 168
            +   M   G +        NT+   LCK  +L +A   ++  M+   G  P   TY  L
Sbjct: 187 KVLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVTYNCL 246

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE------ 222
            + +C VG + +A  +   M ++G  P+V + + +I G C+   V  A+   RE      
Sbjct: 247 ADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEFFREKRTVWP 306

Query: 223 ----------MILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
                      + + F          ++F+EM      P+       I GL + G +L+ 
Sbjct: 307 EARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDA 366

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
                +++ +  +L  + +N LI G C+      A EL  ++    L  DV  YN L+  
Sbjct: 367 CTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSG 426

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L K G     + LL  M ++GC   V TF TL+  +
Sbjct: 427 LCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGY 462



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 45/237 (18%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+   +N LI GFC +  + +A +L+++M   G +P+V T +TL++GL + G+ +     
Sbjct: 380 LDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAV--- 436

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
             E++  M D G   +P+V  +G+L+ G CK    D+   +F  M +  I  NT++    
Sbjct: 437 -DELLGHMIDDG--CQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVI---- 489

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                                  Y  L++  C   +V+VAI LFD M  K    +V +Y+
Sbjct: 490 -----------------------YNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYN 526

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
            L+ G       E+A             ++ + M+     P   T ++ ++ L + G
Sbjct: 527 ALLKGLQDKKMAEKAF------------ELMDRMREERCTPNYVTVDVLMEWLPEIG 571


>gi|255554881|ref|XP_002518478.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542323|gb|EEF43865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 177/388 (45%), Gaps = 60/388 (15%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C    + VT+NS + GFC  GN+  A +  K+M      PNV T  TL+ G  R G++  
Sbjct: 230 CSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTYATLVDGYTRVGSLEN 289

Query: 78  TLKLHQEMVN-GM-----------------GDFGG------------IYKPNVFCYGSLI 107
             +L  E+V  G+                 GD  G            IY P+ F Y  +I
Sbjct: 290 AFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIY-PDQFTYSIVI 348

Query: 108 DGLCKDRLVDQTKD-----LFMEMKDKGINANTL---LCKKTKLVEANRLLELMMQRGLN 159
           +GLC++  +++        L M +     + N +   LC+   L  A +LL  M  RGL 
Sbjct: 349 EGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANMYVRGLV 408

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P + T+  L++ +C  GKV  AI +++ M + G  P++  Y+ +ING+ K  + + A+  
Sbjct: 409 PDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDPAI-- 466

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
              ++++  ++    M L +VV    T N  I G C  G + +   LF  +  S      
Sbjct: 467 ---LLIDTLRR----MGLFDVV----TYNTLIHGYCNCGKIDQAFALFSEMRNSGILASH 515

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK----EGQIKKENY 335
             +N+LI   CK G    A EL   +  + L+ D V Y ILI +  K    E  I+  +Y
Sbjct: 516 VTYNTLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILITSFSKKCSPEEVIELHDY 575

Query: 336 LLLSMEENGCALDVDTFNTLMISFLQKE 363
           ++L     G   D  T+ T++I  LQ+E
Sbjct: 576 MVLK----GVVPDRQTYQTMVIPLLQEE 599



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 168/365 (46%), Gaps = 35/365 (9%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN +I     EG + +A  ++ +    G  PNV T + +I G  + G M+L LKL ++M
Sbjct: 165 TFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNVVTFNMIIDGAIKMGAMDLALKLVRKM 224

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLLCKK 140
              M   G   KP+   Y S ++G CK   +   ++   EM  K I  N     TL+   
Sbjct: 225 -EVMS--GCSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTYATLVDGY 281

Query: 141 TK---LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           T+   L  A RL + ++++GL P    Y  +++   + G +  A  L   M  K   PD 
Sbjct: 282 TRVGSLENAFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQ 341

Query: 198 FSYSVLINGYCKNFNVEEA---------MNVSREMI--------------LNGFKKIFNE 234
           F+YS++I G C+N  + EA         M++ R+                L G K++   
Sbjct: 342 FTYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLAN 401

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M +  +VP+  T    ID  CK+G V   ++++  +  +  +  + I+NS+I G  K G 
Sbjct: 402 MYVRGLVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGS 461

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           F+ A  L + L    L  DVV YN LIH     G+I +   L   M  +G      T+NT
Sbjct: 462 FDPAILLIDTLRRMGLF-DVVTYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHVTYNT 520

Query: 355 LMISF 359
           L+ S 
Sbjct: 521 LINSL 525



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 108/226 (47%), Gaps = 12/226 (5%)

Query: 134 NTLLCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           N  L    KL + NR  ++   M+  G    + T+  ++      G++  A+++     +
Sbjct: 132 NNFLSHLLKLNDVNRFWKMYKEMVSYGYIENVNTFNLIIYALGKEGRLVEAVSVIYRSLK 191

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
            G  P+V +++++I+G  K   ++ A+ + R+M +         M  C+V P++ T N F
Sbjct: 192 TGIWPNVVTFNMIIDGAIKMGAMDLALKLVRKMEV---------MSGCSVKPDSVTYNSF 242

Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           ++G CK G++    E    +     E  V  + +L+ G  + G  E A  L ++L  K L
Sbjct: 243 VNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTYATLVDGYTRVGSLENAFRLCDELVEKGL 302

Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           + + V YN +IH L  EG ++  + LL  M +     D  T++ ++
Sbjct: 303 LPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSIVI 348


>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 567

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 152/347 (43%), Gaps = 27/347 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+N+L+KG CM GN+  + Q + ++   G  PN  T  +L+    +   +N  ++
Sbjct: 164 PANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMR 223

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  E++   G      +PN+  Y  L+ GLCK+  +++   LF  +  KG + N +    
Sbjct: 224 LLDEIIAKGG------QPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNI 277

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC + +  EAN LL  M  R  +P I TY  L+      GK+  A+ + D M    
Sbjct: 278 LLRSLCYEGRWEEANELLAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGP 337

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F P   SY+ +I   CK   VE  +N   +MI             C+    TF     I 
Sbjct: 338 FKPTATSYNPIIARLCKEGKVEAVVNCLDQMIFG----------RCSPNEGTFNA---IA 384

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LC  G V E   L  +L         + +  ++   CK G    A  L  +++      
Sbjct: 385 VLCYEGKVQEAFSLIQSLGNKQNSSIHDYYKGVVSCLCKKGNTYPAFLLLYEMTKYGFTP 444

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           D   Y+ LI  L  EG + +   +   +EE+    D+D FN L++ F
Sbjct: 445 DSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALILGF 491



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 145/326 (44%), Gaps = 26/326 (7%)

Query: 40  IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99
           I DA   ++ +   G +P+V     L+  L ++  M   +++ + M++      GI  P+
Sbjct: 78  ISDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISC-----GII-PD 131

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
              Y  L++ LCK   V     L  +M+D G  ANT+        LC    L ++ + L+
Sbjct: 132 AASYTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLD 191

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            +MQ+GL P  FTY+ LL        VN A+ L D +  KG  P++ SY+VL+ G CK  
Sbjct: 192 RLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEG 251

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            +EEA+ + + +   GF             P   + NI +  LC  G   E  EL   + 
Sbjct: 252 RIEEAIRLFKNLPSKGFS------------PNVVSYNILLRSLCYEGRWEEANELLAEMN 299

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
                  +  +N LI      G  E A ++ +++          +YN +I  L KEG+++
Sbjct: 300 GRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVE 359

Query: 332 KENYLLLSMEENGCALDVDTFNTLMI 357
                L  M    C+ +  TFN + +
Sbjct: 360 AVVNCLDQMIFGRCSPNEGTFNAIAV 385



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 23/273 (8%)

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           L   ++    KD  + + +     N    +  ++ +A   LE +++ G  P +   T LL
Sbjct: 45  LASTQITISPKDSVITLPNWRSGKNDQRNRDMRISDAFFHLEHIVKNGHKPDVVQATQLL 104

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
              C   K+  AI + + M   G +PD  SY+ L+N  CK  NV  AM +  +M  +G+ 
Sbjct: 105 YDLCKSNKMKKAIRVMEMMISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSGYP 164

Query: 230 -----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
                                  +  + +    +VP  FT +  ++   K   V E M L
Sbjct: 165 ANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRL 224

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +     +  +  +N L+ G CK G  E A  LF  L  K    +VV+YNIL+ +L  
Sbjct: 225 LDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCY 284

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           EG+ ++ N LL  M     +  + T+N L+ S 
Sbjct: 285 EGRWEEANELLAEMNGRERSPSIVTYNILIGSL 317



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 124/294 (42%), Gaps = 61/294 (20%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++  A+  F +   + + P N V++N L++  C EG   +A++L+ +M      P++ T 
Sbjct: 252 RIEEAIRLFKNLPSKGFSP-NVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTY 310

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + LI  L   G +   L++  EM+  MG F    KP    Y  +I  LCK+  V+   + 
Sbjct: 311 NILIGSLAFHGKIEQALQVIDEMM--MGPF----KPTATSYNPIIARLCKEGKVEAVVNC 364

Query: 123 FMEM-------KDKGINANTLLCKKTKLVEANRLLEL----------------------- 152
             +M        +   NA  +LC + K+ EA  L++                        
Sbjct: 365 LDQMIFGRCSPNEGTFNAIAVLCYEGKVQEAFSLIQSLGNKQNSSIHDYYKGVVSCLCKK 424

Query: 153 ------------MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                       M + G  P  +TY+ L+ G C+ G +  A+ +F  +    + PD+ ++
Sbjct: 425 GNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDIDNF 484

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           + LI G+CK+   + ++ V   MI  G+             P   T  I ++G+
Sbjct: 485 NALILGFCKSHRTDLSLEVFEMMIEKGY------------TPSETTYTILVEGI 526


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 150/317 (47%), Gaps = 45/317 (14%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P +   FN L+  FC E +IR A  +   +  +G RP+V + +TL+ G  R G+++   +
Sbjct: 121 PASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140
           L   M        G+ +P+V+ Y  LI+GLCK+  +D                       
Sbjct: 181 LKSAM-----HASGV-QPDVYTYSVLINGLCKESKMD----------------------- 211

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
               +AN L + M+ +GL P   T+T L++G+C  G+V++A+ ++  M  +  +PD+ +Y
Sbjct: 212 ----DANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITY 267

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + LI G CK  ++++A ++  EM + G K            P+  T    IDG CK G +
Sbjct: 268 NTLIYGLCKKGDLKQAHDLIDEMSMKGLK------------PDKITYTALIDGCCKEGDL 315

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
               E    +   N  L    + +LI G C+ G    A ++  ++    L  D   Y ++
Sbjct: 316 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMI 375

Query: 321 IHALGKEGQIKKENYLL 337
           I+   K+G + K + LL
Sbjct: 376 INEFCKKGDVWKGSKLL 392



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 150/359 (41%), Gaps = 56/359 (15%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 57  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 116

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
                    Y  +++ +  L+   CK+R +   + +F                       
Sbjct: 117 ESG------YPASLYFFNILMHRFCKERDIRVAQSVF----------------------- 147

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
               + + + GL P + +Y  L+NGY  +G ++    L  +M   G  PDV++YSVLING
Sbjct: 148 ----DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLING 203

Query: 207 YCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPE 243
            CK   +++A  +  EM++ G                         +I+ +M   +++P+
Sbjct: 204 LCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPD 263

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
             T N  I GLCK G + +  +L   + +   +     + +LI GCCK G  + A E   
Sbjct: 264 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRK 323

Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           ++  +N+  D VAY  LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 324 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 382



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 14/205 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI G C E  + DA++L  +M   G  PN  T  TLI G  + G ++L L+++++M
Sbjct: 196 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQM 255

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
           ++          P++  Y +LI GLCK   + Q  DL  EM  KG+  + +         
Sbjct: 256 LSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGC 309

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+  L  A    + M+Q  +      YT L++G C  G+   A  +   M   G  PD 
Sbjct: 310 CKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDA 369

Query: 198 FSYSVLINGYCKNFNVEEAMNVSRE 222
            +Y+++IN +CK  +V +   + +E
Sbjct: 370 RTYTMIINEFCKKGDVWKGSKLLKE 394



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+DV + +LI G C EG   DA +++++M + G +P+  T   +I    + G++    KL
Sbjct: 332 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKL 391

Query: 82  HQE 84
            +E
Sbjct: 392 LKE 394



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 31/221 (14%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM-P 195
           LC    L EA  L+++++ R                   GK + +      +  KG    
Sbjct: 11  LCTHQMLSEAKSLIQVVVSRK------------------GKGSASAVFAVILETKGTQRS 52

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D++ +S LI  Y ++  + +A+   R    + F   F+            TC   ++ L 
Sbjct: 53  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFD------------TCRKVLEHLM 100

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K  +   V   +  +  S     +  FN L+   CK     +A  +F+ ++   L   VV
Sbjct: 101 KLKYFKLVWGFYKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVV 160

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +YN L++   + G + +   L  +M  +G   DV T++ L+
Sbjct: 161 SYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLI 201


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 164/368 (44%), Gaps = 36/368 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V++N LIKG+C    I DA +L+ +M   GC P+  +  T++  L +   +    +L + 
Sbjct: 303 VSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLMEN 362

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV           P+   Y +LI  L K    D       E ++KG + + +        
Sbjct: 363 MVQNSNLI-----PDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDS 417

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   + +A  L+  M  +G NP + TYT +++G+C VGK++ A  +   M + G  P+
Sbjct: 418 FCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPN 477

Query: 197 VFSYSVLINGYC---KNFNVEEAMNVSRE-----------MILNGFKK---------IFN 233
             +Y+VL+NG C   K+    E +NVS E            +++G ++         +  
Sbjct: 478 TVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTR 537

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM     +P     N+ I  LC+N +V+   +         C + V  F S+I G C+ G
Sbjct: 538 EMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIG 597

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A  +   +   N   D + Y  L  ALGK+ ++ + + L++ M   G      T+ 
Sbjct: 598 DLDAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYR 657

Query: 354 TLMISFLQ 361
            ++  F Q
Sbjct: 658 AVIHRFCQ 665



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 159/368 (43%), Gaps = 38/368 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            F+ ++  +   G +R+A +++  M   G  P+++ C+T I  L +   +   L+  + M
Sbjct: 234 AFSYVMVSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERM 293

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
                   GI +P++  Y  LI G C    +D   +L  EM  KG   +          L
Sbjct: 294 -----KVAGI-EPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFL 347

Query: 138 CKKTKLVEANRLLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           CK  K+ E  RL+E M+Q   L P   TY  L+      G  + A+        KGF  D
Sbjct: 348 CKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHID 407

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFN 233
              YS +++ +CKN N+++A ++  +M              I++GF         KK+  
Sbjct: 408 KVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQ 467

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           +M      P T T  + ++GLC NG  LE  E+    E          +++++ G  + G
Sbjct: 468 QMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREG 527

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
               A +L  ++  K  + + V  N+LI +L +   +      L      GCA++V  F 
Sbjct: 528 KLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFT 587

Query: 354 TLMISFLQ 361
           +++  F Q
Sbjct: 588 SVIYGFCQ 595



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 145/339 (42%), Gaps = 51/339 (15%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++ V +++++  FC   NI  A  LV  M + GC P+V T   +I G  R G ++   K+
Sbjct: 406 IDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKM 465

Query: 82  HQEM---------------VNGMGDFG--------------GIYKPNVFCYGSLIDGLCK 112
            Q+M               +NG+   G                + PN   Y +++ GL +
Sbjct: 466 LQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRR 525

Query: 113 DRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFT 164
           +  + +  DL  EM +KG   N +        LC+   +V A + LE  + +G    +  
Sbjct: 526 EGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVN 585

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           +T ++ G+C +G ++ A+++ + M      PD  +Y+ L +   K   ++EA  +  +M+
Sbjct: 586 FTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELIVKML 645

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
             G            + P   T    I   C+ G V ++M+L   +     + F  ++N 
Sbjct: 646 GKG------------IDPTPVTYRAVIHRFCQWGRVDDMMKLLEKMIAR--QPFKTVYNQ 691

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           +I   C FG  E A +L  K+       D    +ILI +
Sbjct: 692 VIEKLCYFGNREEAEKLLGKVLRTASKLDAKTCHILIES 730



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 18/224 (8%)

Query: 140 KTKLVE-ANRLLELMMQRGL--NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           KT+L + A R+L LM +RG+  +P  F+Y  ++  Y   G +  A+ +   M + G  PD
Sbjct: 209 KTRLCQGARRILRLMTRRGIERSPEAFSY--VMVSYSRAGMLRNALRILTLMQKAGVEPD 266

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           +   +  I    K   +E+A+            +    MK+  + P+  + N  I G C 
Sbjct: 267 LSICNTAIYVLVKGNKLEKAL------------RFLERMKVAGIEPDIVSYNCLIKGYCD 314

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK-FGIFEIASELFNKLSCKNLVADVV 315
              + + +EL   +    C      + +++   CK   + E+   + N +   NL+ D V
Sbjct: 315 VHRIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQV 374

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            YN LI+AL K G        L   EE G  +D   ++ ++ SF
Sbjct: 375 TYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSF 418


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 168/368 (45%), Gaps = 30/368 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           +V  AL      +RR  +P + VT+  L++  C       A +++ +M   GC PN+ T 
Sbjct: 152 RVGDALSLLDDMLRRECQP-SVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTY 210

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + +I G+ R   ++      ++++N +  +G  ++P+   Y +++ GLC  +  +  + L
Sbjct: 211 NVIINGMCREDRVDDA----RQILNRLSSYG--FQPDTVSYTTVLKGLCAAKRWEDVEVL 264

Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
           F EM +     N +         C+   +  A  +L+ M + G          ++N  C 
Sbjct: 265 FCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICK 324

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G+V+ A    ++M   G  PD  SY+ ++ G C+    E+A            K++ NE
Sbjct: 325 QGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDA------------KELLNE 372

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M   N  P   T N FI  LC+ G + + + L   +    C + +  +N+L+ G C  G 
Sbjct: 373 MVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGR 432

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            + A ELFN L C+    + + Y  L+  L    ++     LL  M +N C L+V TFN 
Sbjct: 433 VDSALELFNSLPCE---PNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNV 489

Query: 355 LMISFLQK 362
           L+  F QK
Sbjct: 490 LVSFFCQK 497



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 156/347 (44%), Gaps = 29/347 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P++   +N+L+ G+C  G +  A +L+  M      P+  T   LI GL   G +   L 
Sbjct: 102 PVDVFAYNTLVAGYCRYGRLDAARRLIASMPV---PPDAYTYTPLIRGLCDRGRVGDALS 158

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  +M+          +P+V  Y  L++ +CK     Q   +  EM+ KG   N +    
Sbjct: 159 LLDDMLRRE------CQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNV 212

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               +C++ ++ +A ++L  +   G  P   +YT +L G C   +      LF  M    
Sbjct: 213 IINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENN 272

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
            +P+  ++ +L+  +C+   VE A+ V   M  +G                T  CNI I+
Sbjct: 273 CVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHG------------CTANTTLCNIVIN 320

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            +CK G V +  E    +    C      + ++++G C+ G +E A EL N++  KN   
Sbjct: 321 SICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPP 380

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           + V +N  I  L ++G I +   L+  M E GC++ + T+N L+  F
Sbjct: 381 NEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGF 427



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 170/372 (45%), Gaps = 41/372 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTF+ L++ FC  G +  A +++ +M+  GC  N T C+ +I  + + G ++      
Sbjct: 276 NEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAF--- 332

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------- 135
            E +N MG +G    P+   Y +++ GLC+    +  K+L  EM  K    N        
Sbjct: 333 -EFLNNMGSYG--CSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFI 389

Query: 136 -LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            +LC+K  + +A  L+E M + G +  I TY  L+NG+C+ G+V+ A+ LF+S+  +   
Sbjct: 390 CILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCE--- 446

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILN-------------------GFKK----I 231
           P+  +Y+ L+ G C    ++ A  +  EM+ N                   GF +    +
Sbjct: 447 PNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIEL 506

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
             +M      P   T N  +DG+ ++ +  E +EL   L      L    ++S++    +
Sbjct: 507 VQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSR 566

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
               E A ++F+ +    +    V YN ++ AL K  +  +       M  N C  +  T
Sbjct: 567 EDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNEST 626

Query: 352 FNTLMISFLQKE 363
           +  ++I  L +E
Sbjct: 627 Y-VILIEGLARE 637



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 155/364 (42%), Gaps = 36/364 (9%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           +S ++      ++ +A++LV++  + G  P+V  C  LI  L R G  +   ++ +    
Sbjct: 39  SSRLRRLIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLR-TAE 97

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------LCKKT 141
           G G        +VF Y +L+ G C+   +D  + L   M     +A T       LC + 
Sbjct: 98  GSG-----APVDVFAYNTLVAGYCRYGRLDAARRLIASMPVPP-DAYTYTPLIRGLCDRG 151

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           ++ +A  LL+ M++R   P + TYT LL   C       A+ + D M  KG  P++ +Y+
Sbjct: 152 RVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYN 211

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLC 238
           V+ING C+   V++A  +   +   GF+                        +F EM   
Sbjct: 212 VIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVEN 271

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
           N VP   T ++ +   C+ G V   +E+   +    C     + N +I   CK G  + A
Sbjct: 272 NCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDA 331

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
            E  N +       D ++Y  ++  L + G+ +    LL  M    C  +  TFNT +  
Sbjct: 332 FEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICI 391

Query: 359 FLQK 362
             QK
Sbjct: 392 LCQK 395



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 168/369 (45%), Gaps = 35/369 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+N +I G C E  + DA Q++ +++++G +P+  +  T++ GL           L 
Sbjct: 206 NIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLF 265

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC---- 138
            EMV           PN   +  L+   C+  +V++  ++   M + G  ANT LC    
Sbjct: 266 CEMVENN------CVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVI 319

Query: 139 ----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K+ ++ +A   L  M   G +P   +YT +L G C  G+   A  L + M RK   
Sbjct: 320 NSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCP 379

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---KKIFNEMKL 237
           P+  +++  I   C+   +++A+ +  +M              ++NGF    ++ + ++L
Sbjct: 380 PNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALEL 439

Query: 238 CNVVP---ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
            N +P    T T    + GLC    +    EL   +  ++C L V  FN L+   C+ G 
Sbjct: 440 FNSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGF 499

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
            E A EL  ++       +++ +N L+  + ++   ++   LL  +   G +LD  T+++
Sbjct: 500 VEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSS 559

Query: 355 LMISFLQKE 363
           + +  L +E
Sbjct: 560 I-VDVLSRE 567



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 147/327 (44%), Gaps = 23/327 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + +++ +++KG C  G   DA +L+ +M    C PN  T +T I  L + G ++  + L 
Sbjct: 346 DTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLI 405

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTLL--- 137
           ++M       G      +  Y +L++G C    VD   +LF  +  +   I   TLL   
Sbjct: 406 EQMPEYGCSVG------IVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITYTTLLTGL 459

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C   +L  A  LL  MMQ      + T+  L++ +C  G V  AI L   M   G  P++
Sbjct: 460 CHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNL 519

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +++ L++G  ++ N EEA+ +   ++  G               +T T +  +D L + 
Sbjct: 520 ITFNTLLDGITEDCNSEEALELLHGLVSKGISL------------DTITYSSIVDVLSRE 567

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             + E +++F  ++         ++N ++   CK    + A + F  +   + + +   Y
Sbjct: 568 DRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTY 627

Query: 318 NILIHALGKEGQIKKENYLLLSMEENG 344
            ILI  L +EG +K+  Y+L  +   G
Sbjct: 628 VILIEGLAREGLLKEARYVLSELCSRG 654



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 131/300 (43%), Gaps = 29/300 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N+VTFN+ I   C +G I  A  L+++M  +GC   + T + L+ G    G ++  L+
Sbjct: 379 PPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALE 438

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------ 134
           L   +           +PN   Y +L+ GLC    +D   +L  EM       N      
Sbjct: 439 LFNSLP---------CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNV 489

Query: 135 --TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             +  C+K  + EA  L++ MM+ G  P + T+  LL+G         A+ L   +  KG
Sbjct: 490 LVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKG 549

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              D  +YS +++   +   +EEA+            ++F+ ++   + P+    N  + 
Sbjct: 550 ISLDTITYSSIVDVLSREDRIEEAV------------QMFHAVQDMGMRPKAVMYNKILS 597

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK       ++ F  +  ++C      +  LI G  + G+ + A  + ++L  + +++
Sbjct: 598 ALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARYVLSELCSRGVLS 657



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ +T++S++     E  I +A Q+   +   G RP     + +++ L +    +  +  
Sbjct: 552 LDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDF 611

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137
              MV+          PN   Y  LI+GL ++ L+ + + +  E+  +G+ + +L+
Sbjct: 612 FAHMVSNS------CMPNESTYVILIEGLAREGLLKEARYVLSELCSRGVLSKSLI 661


>gi|224115398|ref|XP_002317023.1| predicted protein [Populus trichocarpa]
 gi|222860088|gb|EEE97635.1| predicted protein [Populus trichocarpa]
          Length = 455

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 152/347 (43%), Gaps = 27/347 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+NSL++G CM GN+  + QL+ K+   G  PN  T   L+    +   +N  +K
Sbjct: 52  PTNTVTYNSLVRGLCMHGNLNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMK 111

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  E++         ++PN+  Y  L+ GLCK+   ++    F ++  KG N N +    
Sbjct: 112 LLDEII------AKGWQPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNI 165

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC + +  EAN+LL  M     +P + TY  L+      G++  A  + D M R  
Sbjct: 166 ILRSLCHEGRWEEANQLLAEMDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRAS 225

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F P   +Y+ +I   CK   ++  +    +MI +           CN    TF     I 
Sbjct: 226 FKPSATTYNPIIAHLCKEGKLDLVIKCLDQMIHHR----------CNPNEGTFNA---IA 272

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK G V E   +   L         + +  +I   C+ G    A +L  +++    V 
Sbjct: 273 VLCKQGRVPEAFSIIQNLGNKQRSSTHDFYKGVITSLCRKGNTYPAFQLLYEMTKFGFVP 332

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           D   Y+ LI  L  EG + +   +   +EEN     +D FN L++ F
Sbjct: 333 DPYTYSSLIRGLCIEGMLDEALEIFRLLEENDYRPILDNFNALILGF 379



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 118/268 (44%), Gaps = 20/268 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
           P+   Y  L++ LCK   +     L  +M++ G   NT+        LC    L ++ +L
Sbjct: 18  PDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSLVRGLCMHGNLNQSLQL 77

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
           L+ +M +GL P  FTY+ LL        VN A+ L D +  KG+ P++ SY+VL+ G CK
Sbjct: 78  LDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKGWQPNLVSYNVLLTGLCK 137

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
               EEA+   R++   GF             P   + NI +  LC  G   E  +L   
Sbjct: 138 EGRTEEAIRFFRDLPSKGFN------------PNVVSYNIILRSLCHEGRWEEANQLLAE 185

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           ++       +  +N LI      G  E A E+ +++   +       YN +I  L KEG+
Sbjct: 186 MDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRASFKPSATTYNPIIAHLCKEGK 245

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMI 357
           +      L  M  + C  +  TFN + +
Sbjct: 246 LDLVIKCLDQMIHHRCNPNEGTFNAIAV 273



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 107/215 (49%), Gaps = 12/215 (5%)

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           +A R++E+M++ G+ P   +YT L+N  C  G +  A+ L + M   G+  +  +Y+ L+
Sbjct: 3   KATRVMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSLV 62

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
            G C + N+ +++ +  +++  G            +VP  FT +  ++   K   V E M
Sbjct: 63  RGLCMHGNLNQSLQLLDKLMWKG------------LVPNEFTYSFLLEAAYKERGVNEAM 110

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           +L   +     +  +  +N L+ G CK G  E A   F  L  K    +VV+YNI++ +L
Sbjct: 111 KLLDEIIAKGWQPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSL 170

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             EG+ ++ N LL  M+    +  + T+N L+ S 
Sbjct: 171 CHEGRWEEANQLLAEMDSEERSPSLVTYNILIGSL 205



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 27/239 (11%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N LI      G I  A +++ +M     +P+ TT + +I  L + G ++L +K   +
Sbjct: 196 VTYNILIGSLAFHGRIEHAFEVLDEMVRASFKPSATTYNPIIAHLCKEGKLDLVIKCLDQ 255

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TL 136
           M++   +      PN   + + I  LCK   V +   +   + +K  ++         T 
Sbjct: 256 MIHHRCN------PNEGTFNA-IAVLCKQGRVPEAFSIIQNLGNKQRSSTHDFYKGVITS 308

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC+K     A +LL  M + G  P  +TY+ L+ G C+ G ++ A+ +F  +    + P 
Sbjct: 309 LCRKGNTYPAFQLLYEMTKFGFVPDPYTYSSLIRGLCIEGMLDEALEIFRLLEENDYRPI 368

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           + +++ LI G+CK+   + ++++   M+  G+             P   T  I ++G+ 
Sbjct: 369 LDNFNALILGFCKSGRTDLSLDILEMMVEKGY------------TPNETTYTIIVEGIA 415


>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
          Length = 667

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 164/368 (44%), Gaps = 40/368 (10%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L   T++  I   C    I    +L+  M  FGC P++  C+  +  L +   ++  LK 
Sbjct: 229 LTSFTYSRWISALCQSERIELVERLLADMDKFGCFPDIWACNIYVDCLCKHNRLHDALKT 288

Query: 82  HQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
            + M + G         P+V  Y +++  LC ++   +  +L+ EM  +G+  + +    
Sbjct: 289 LENMWIRGTN-------PDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPDIVACGV 341

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  K+ EA  L   M+   L   +  Y  L++G+   G +N A  +   M   G
Sbjct: 342 LIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMRTNG 401

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREM----ILNGFKKIFNEM--KLCNVVP---- 242
             PDV +Y++ +N YC    ++EA  +  EM    I+N  +  +N+M   LC        
Sbjct: 402 CEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSGIVNPDRYSYNQMLKGLCKAHQLDRA 461

Query: 243 --------------ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                         +  +CNI ID  CK   V   ++LF  +     +     + +LI G
Sbjct: 462 FGFVSDHMEVGGFCDIVSCNILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLING 521

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
               G + +A E+F ++    +V +V  YNI++H L K GQ ++   + L M +   + D
Sbjct: 522 LYGVGYYYLAEEIFEQMLKARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPD 581

Query: 349 VDTFNTLM 356
           + TFNTL+
Sbjct: 582 IITFNTLI 589



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 147/346 (42%), Gaps = 60/346 (17%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN   +N+LI GF   G+I  A +++  M T GC P+V T +  +     TG +    KL
Sbjct: 369 LNVCIYNALISGFLRSGSINKAFKIISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKL 428

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
            +EM     +  GI  P+ + Y  ++ GLCK   +D+      +  + G     ++ N L
Sbjct: 429 IEEM-----EMSGIVNPDRYSYNQMLKGLCKAHQLDRAFGFVSDHMEVGGFCDIVSCNIL 483

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +   CK  K+  A +L + M  +G+     TY  L+NG   VG   +A  +F+ M +   
Sbjct: 484 IDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYYYLAEEIFEQMLKARV 543

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
           +P+V  Y+++++  CK    E+A            +KIF +M    V P+  T N  I  
Sbjct: 544 VPNVNLYNIMLHNLCKAGQFEQA------------QKIFLQMIQKEVSPDIITFNTLIYW 591

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           L K    +E +                                   +LF  ++ + +  D
Sbjct: 592 LGKCSRAIEAI-----------------------------------DLFRDMTARGIEPD 616

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            + +  LI  L +EG+  +   +   M ENG  LD D  + L+  F
Sbjct: 617 SLTFRYLISGLLEEGKATQAYEVWEYMLENGIILDRDVSDRLISMF 662



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 140/310 (45%), Gaps = 28/310 (9%)

Query: 44  SQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFC 102
           S+ ++++ + G   + +    L++G  R G  +  +    EMV +G  +FG  Y   +  
Sbjct: 146 SEFLERVRSQGVALHRSLYRILLSGYVRAGKFDSVIHTFDEMVTSGCREFGVDYNRFI-- 203

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMM 154
            G L+   C D LV++   + +   DKG    +         LC+  ++    RLL  M 
Sbjct: 204 -GVLVKNCCFD-LVEKYYSVAL---DKGFCLTSFTYSRWISALCQSERIELVERLLADMD 258

Query: 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214
           + G  P I+     ++  C   +++ A+   ++M  +G  PDV +Y+ ++   C N    
Sbjct: 259 KFGCFPDIWACNIYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFA 318

Query: 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
           EA+ +  EM+  G K            P+   C + I GLCK+  V E  EL   +   N
Sbjct: 319 EAVELWEEMVRRGLK------------PDIVACGVLIFGLCKSDKVDEAFELALRMLSLN 366

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
            EL V I+N+LI G  + G    A ++ + +       DVV YNI ++     G IK+  
Sbjct: 367 LELNVCIYNALISGFLRSGSINKAFKIISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAE 426

Query: 335 YLLLSMEENG 344
            L+  ME +G
Sbjct: 427 KLIEEMEMSG 436



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 98/250 (39%), Gaps = 47/250 (18%)

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR---------------- 190
           +  LE +  +G+      Y  LL+GY   GK +  I  FD M                  
Sbjct: 146 SEFLERVRSQGVALHRSLYRILLSGYVRAGKFDSVIHTFDEMVTSGCREFGVDYNRFIGV 205

Query: 191 -------------------KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
                              KGF    F+YS  I+  C++  +E              +++
Sbjct: 206 LVKNCCFDLVEKYYSVALDKGFCLTSFTYSRWISALCQSERIELV------------ERL 253

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
             +M      P+ + CNI++D LCK+  + + ++    + I      V  + +++   C 
Sbjct: 254 LADMDKFGCFPDIWACNIYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCD 313

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
              F  A EL+ ++  + L  D+VA  +LI  L K  ++ +   L L M      L+V  
Sbjct: 314 NKQFAEAVELWEEMVRRGLKPDIVACGVLIFGLCKSDKVDEAFELALRMLSLNLELNVCI 373

Query: 352 FNTLMISFLQ 361
           +N L+  FL+
Sbjct: 374 YNALISGFLR 383


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 162/344 (47%), Gaps = 29/344 (8%)

Query: 12  GSFIRRCYRPL---NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
           G  +RR +  L   N  TFN +I   C EG + +A  L  +M   GC P+V T ++LI G
Sbjct: 173 GRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDG 232

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
             + G ++   +L +EM           K +V  Y +LI+  CK   ++     F  MK 
Sbjct: 233 YGKCGELDEVEQLVEEMRRSG------CKADVVTYNALINCFCKFGRMETAYGYFAAMKR 286

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +G+ AN +         CK+  + EA +L   M  RG+    FTYT L++G C  G+++ 
Sbjct: 287 EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDD 346

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           AI L D M R+G   +V +Y+VL++G CK   V EA +V R M   G +   NE+     
Sbjct: 347 AIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRA--NEL----- 399

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
                     I G   N +  + + L   ++    EL + ++ +LI+G C     + A  
Sbjct: 400 -----LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKS 454

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           L  K+    L  + + Y  ++ A  K G++ +   +L  + ++G
Sbjct: 455 LLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSG 498



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 151/337 (44%), Gaps = 30/337 (8%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           ++L+      G + DA + V ++      PN  TC+ ++  L R  +  L  +L      
Sbjct: 126 DTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRL------ 179

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CK 139
               F  +  PNVF +  +ID LCK+  + + + LF  MK+ G     +  N+L+    K
Sbjct: 180 ----FEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGK 235

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
             +L E  +L+E M + G    + TY  L+N +C  G++  A   F +M R+G M +V +
Sbjct: 236 CGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVT 295

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           +S  ++ +CK   V EAM            K+F +M++  +    FT    IDG CK G 
Sbjct: 296 FSTFVDAFCKEGLVREAM------------KLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + + + L   +      L V  +  L+ G CK      A ++   +    + A+ + Y  
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           LIH        +K   LL  M+  G  LD+  +  L+
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALI 440



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 148/319 (46%), Gaps = 28/319 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF++ +  FC EG +R+A +L  +M   G   N  T   LI G  + G ++  + L 
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLL 351

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
            EMV       G+   NV  Y  L+DGLCK+R V + +D+   M+  G+ AN LL   T 
Sbjct: 352 DEMVRQ-----GV-PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELL--YTT 403

Query: 143 LVEAN----------RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           L+  +           LL  M  +GL   I  Y  L+ G C V K++ A +L   M   G
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----------KIFNEMKLCNVVP 242
             P+   Y+ +++   K+  V EA+ + ++++ +GF+          ++FNEM    +  
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSL 523

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +       +DG  K G++ +   L   +  S  +L +  +   I G C   +   A E+F
Sbjct: 524 DKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVF 583

Query: 303 NKLSCKNLVADVVAYNILI 321
           +++    +  D   YN LI
Sbjct: 584 SEMIGHGIAPDRAVYNCLI 602



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 107/246 (43%), Gaps = 39/246 (15%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           PLN VT+  L+ G C E  + +A  +++ M   G R N     TLI G     N    L 
Sbjct: 360 PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALG 419

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-- 138
           L  EM N   +       ++  YG+LI GLC    +D+ K L  +M + G+  N ++   
Sbjct: 420 LLSEMKNKGLEL------DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473

Query: 139 ------KKTKLVEANRLLELMMQRGLNP---------VIF-------------TYTPLLN 170
                 K  K+ EA  +L+ ++  G  P          +F              YT LL+
Sbjct: 474 MMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLD 533

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-- 228
           GY   G ++ A AL   M   G   D+F Y+  I+G+C    + EA  V  EMI +G   
Sbjct: 534 GYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAP 593

Query: 229 -KKIFN 233
            + ++N
Sbjct: 594 DRAVYN 599



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 4/131 (3%)

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
           +++F ++      P  FT NI ID LCK G + E   LF  ++   C   V  FNSLI G
Sbjct: 177 RRLFEQLP----APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDG 232

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K G  +   +L  ++      ADVV YN LI+   K G+++       +M+  G   +
Sbjct: 233 YGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMAN 292

Query: 349 VDTFNTLMISF 359
           V TF+T + +F
Sbjct: 293 VVTFSTFVDAF 303


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 160/351 (45%), Gaps = 54/351 (15%)

Query: 3   KVLGALMAFGSF---------IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF 53
           KVL  LM F  F         +  C  P +   FN L++ FC EG +R A  +   +  +
Sbjct: 106 KVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKW 165

Query: 54  GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113
           G RP+V + +TLI G  + G+++   +L   M           +P+V+ Y  LI+GLCK+
Sbjct: 166 GLRPSVVSFNTLINGYIKLGDLDEGFRLKSAM------HASGAQPDVYTYSILINGLCKE 219

Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
             +D+  +LF EM D G+  N +                           T+T L++G+C
Sbjct: 220 GKLDEANELFNEMLDNGLVPNGV---------------------------TFTTLIHGHC 252

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
              KV++A+ ++  M  +G  PD+ +Y+ LI G CK   +++  ++  EMI+NG K    
Sbjct: 253 KNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLK---- 308

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
                   P+  +    IDG CK G +   +EL   +   +  L    + +LI   C+ G
Sbjct: 309 --------PDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREG 360

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
               A ++  ++    L  D   Y ++I+   K+   K  + LL  M+ +G
Sbjct: 361 RAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDG 411



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 158/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ L+  +   G +RDA Q  +       R    TC  ++  L       L    ++E++
Sbjct: 69  FSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L E  RL   M   G  P ++TY+ L+NG C  GK++ A  LF+ M   G +P+  
Sbjct: 183 KLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+  G              P+  T N  I GLCK G
Sbjct: 243 TFTTLIHGHCKNEKVDLAMEIYKQMLSQGLS------------PDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +V +L   + ++  +     + +LI G CK G  EIA EL NK+  +++  D VAY 
Sbjct: 291 ELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   D  T+  ++  F +K
Sbjct: 351 ALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKK 394



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 16/186 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C    +  A ++ K+M + G  P++ T +TLI GL + G +     L 
Sbjct: 240 NGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLI 299

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM+ NG+       KP+   Y +LIDG CK+  ++   +L  +M  + I  + +     
Sbjct: 300 DEMIMNGL-------KPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTAL 352

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ +  +A ++L  M+  GL P   TYT ++N +C       A  L   M R G 
Sbjct: 353 ISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGP 412

Query: 194 MPDVFS 199
           +P V +
Sbjct: 413 VPGVVT 418



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 14/231 (6%)

Query: 136 LLCKKTKLVEANRLLELMMQR-GLNPVIFTYTPLLNGY-CLVGKVNVAIALFDSMARKGF 193
           LLC    L+EA  L+++++ R G +     +  +L      +    V   L  +    GF
Sbjct: 22  LLCTHQMLIEAKSLIQVVVSRKGKDSASDVFEAILETKGTQISDFYVFSGLMIAYLESGF 81

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSRE-----MILNGFKKIFN---EMKLCNVVPETF 245
           + D      L     K   +    +  R+     M    FK +++   E+  C      +
Sbjct: 82  VRDAVQCFRLT----KQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLY 137

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
             NI +   CK G +     +F  +        V  FN+LI G  K G  +    L + +
Sbjct: 138 FFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAM 197

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                  DV  Y+ILI+ L KEG++ + N L   M +NG   +  TF TL+
Sbjct: 198 HASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLI 248


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 162/343 (47%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+  LI   C  G + +A +L  KM   G +P+     TL+      G+++ T K    
Sbjct: 298 VTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLD-TFKEFWS 356

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLLC- 138
            +   G     Y P+V  +  L+D LCK R  D+    F  M+ +GI       NTL+C 
Sbjct: 357 QMEADG-----YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICG 411

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             +  ++ +A +LL  M   G+ P  +TY   ++ +   G+   A+  F+ M  KG +P+
Sbjct: 412 LLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPN 471

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + + +  +    +   + EA            K +FN ++   + P++ T N+ +    K
Sbjct: 472 IVACNASLYSLAEMGRLREA------------KTMFNGLRENGLAPDSVTYNMMMKCYSK 519

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V E + L   +  + CE  V + NSLI    K G  + A ++F+++    L   VV 
Sbjct: 520 VGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVT 579

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           YN L+  LGKEG+++K   L  SM E  C+ +  +FNTL+  F
Sbjct: 580 YNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCF 622



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 148/327 (45%), Gaps = 26/327 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF  L+   C   +  +A      M   G  PN+ T +TLI GL R G +   LKL   
Sbjct: 368 VTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL--- 424

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT--- 141
            +  M   G   +P  + Y   ID   K     +  + F +MK KGI  N + C  +   
Sbjct: 425 -LGTMESVG--VQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYS 481

Query: 142 -----KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
                +L EA  +   + + GL P   TY  ++  Y  VG+V+ A+ L   M R G  PD
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPD 541

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V   + LI+   K   V+EA             ++F+ MK   + P   T N  + GL K
Sbjct: 542 VIVVNSLIDSLYKAGRVDEAW------------QMFDRMKDMKLSPTVVTYNTLLSGLGK 589

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V + +ELF ++    C      FN+L+   CK    E+A ++F+K++  +   DV+ 
Sbjct: 590 EGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT 649

Query: 317 YNILIHALGKEGQIKKENYLLLSMEEN 343
           YN +I+ L KE ++    +    ++++
Sbjct: 650 YNTVIYGLIKENKVNHAFWFFHQLKKS 676



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 15/229 (6%)

Query: 7    ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
            AL  F   +   +RP    T+  LI G    G + +A +L ++M+ +GC+PN    + LI
Sbjct: 877  ALDFFYDLVSSDFRP-TPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILI 935

Query: 67   TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             G  + G+     +L + MVN      GI +P++  Y  L+D LC    VD+    F E+
Sbjct: 936  NGYGKIGDTETACQLFKRMVNE-----GI-RPDLKSYTILVDCLCLAGRVDEALYYFNEL 989

Query: 127  KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            K  G++ + +        L K  ++ EA  L   M  RG+ P ++TY  L+    L G V
Sbjct: 990  KSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMV 1049

Query: 179  NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
              A  +++ +   G  PDVF+Y+ LI GY  + N E A  V + M+++G
Sbjct: 1050 EQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDG 1098



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 162/374 (43%), Gaps = 61/374 (16%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ ++ K   + G +R  + ++ KM   G   N  + + LI  L ++G     L++++ M
Sbjct: 159 TYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRM 218

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LL 137
           V+      G+ KP++  Y +L+  L K R  +    L  EM+D G+  N         +L
Sbjct: 219 VSE-----GL-KPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVL 272

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF------------ 185
            +  K+ EA  +   M   G  P + TYT L++  C  G++  A  LF            
Sbjct: 273 GRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQ 332

Query: 186 -----------------------DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
                                    M   G+MPDV ++++L++  CK  + +EA      
Sbjct: 333 VIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFAT--- 389

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                    F+ M+   ++P   T N  I GL + G + + ++L  T+E    +     +
Sbjct: 390 ---------FDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTY 440

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           N  I    K G    A E F K+  K +V ++VA N  +++L + G++++   +   + E
Sbjct: 441 NIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRE 500

Query: 343 NGCALDVDTFNTLM 356
           NG A D  T+N +M
Sbjct: 501 NGLAPDSVTYNMMM 514



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 151/357 (42%), Gaps = 45/357 (12%)

Query: 3    KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            + L A   F  F ++        ++N LI           A  L K M   GC P+  T 
Sbjct: 767  RELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTF 826

Query: 63   DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            + L+    ++G +    +L++EM++         KP+   Y  +I  L K   +D+  D 
Sbjct: 827  NMLLAVHGKSGKITELFELYKEMISRRC------KPDAITYNIVISSLAKSNNLDKALDF 880

Query: 123  FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
            F ++                           +     P   TY PL++G   VG++  A+
Sbjct: 881  FYDL---------------------------VSSDFRPTPRTYGPLIDGLAKVGRLEEAM 913

Query: 183  ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
             LF+ M+  G  P+   +++LINGY K  + E A  +        FK++ NE     + P
Sbjct: 914  RLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL--------FKRMVNE----GIRP 961

Query: 243  ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
            +  +  I +D LC  G V E +  F  L+ +  +     +N +I G  K    E A  L+
Sbjct: 962  DLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALY 1021

Query: 303  NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            N++  + +V D+  YN L+  LG  G +++   +   ++  G   DV T+N L+  +
Sbjct: 1022 NEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGY 1078



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 170/415 (40%), Gaps = 62/415 (14%)

Query: 3    KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            +V  A+  F S I +   P N ++FN+L+  FC    +  A ++  KM    C+P+V T 
Sbjct: 592  RVQKAIELFESMIEKKCSP-NTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTY 650

Query: 63   DTLITGLRRTGNMN--------LTLKLHQEMVN------------GMGDFGGI------- 95
            +T+I GL +   +N        L   +H + V              +GD   I       
Sbjct: 651  NTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQ 710

Query: 96   --YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVE 145
              ++ N   +  L+ G   +  +D+      E+   GI            +LCK  + + 
Sbjct: 711  VRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELY 770

Query: 146  ANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
            A ++ +   ++ G++P + +Y  L+     V     A  LF  M   G  PD F++++L+
Sbjct: 771  AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 205  NGYCKNFNVEEAMNVSREMI-----------------------LNGFKKIFNEMKLCNVV 241
              + K+  + E   + +EMI                       L+     F ++   +  
Sbjct: 831  AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890

Query: 242  PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
            P   T    IDGL K G + E M LF  +    C+    IFN LI G  K G  E A +L
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 302  FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            F ++  + +  D+ +Y IL+  L   G++ +  Y    ++  G   D   +N ++
Sbjct: 951  FKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRII 1005



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 23/238 (9%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           K+ +   + E M ++ +   + TY  +     + G +     + + M + GF+ + +SY+
Sbjct: 137 KVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYN 196

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLC 238
            LI+   ++    EA+ V R M+  G K                        +  EM+  
Sbjct: 197 GLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDL 256

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            + P  +T  I I  L + G + E  E+F  ++   C   +  +  LI   C  G  E A
Sbjct: 257 GLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENA 316

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ELF K+       D V Y  L+      G +         ME +G   DV TF  L+
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILV 374


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 146/318 (45%), Gaps = 29/318 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   F  LI  F   G + +A ++  K+  F   P V  C+ L+ GL +  + ++  +L+
Sbjct: 118 NPSVFGVLIIAFSEVGLVDEALRVYLKVGAF---PAVQACNALLNGLLKKSSFDIMWELY 174

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
             MV+          P V  Y  L+D  C+   V + K L  EM  KGI    +      
Sbjct: 175 NNMVSRR------LFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLI 228

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC ++KL+EA  +   M   G+ P ++TY  L++GYC    V  A+ L+  M   G  
Sbjct: 229 HGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQ 288

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+V ++ +LI+  CK           RE++    ++ F +M    VVP     N  IDG 
Sbjct: 289 PNVVTFGILIDALCK----------VRELL--AARRFFVQMAKFGVVPNVVVFNSLIDGY 336

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K G+  E  +L   +E       V  ++ LI+  C+ G  E A ++  ++  + + A+ 
Sbjct: 337 SKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANS 396

Query: 315 VAYNILIHALGKEGQIKK 332
           V YN LI    KEG ++K
Sbjct: 397 VVYNSLIDGYCKEGNMEK 414



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 21/271 (7%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           VL A       +++   P   V + +LI G C E  + +A  + ++M   G  PN+ T +
Sbjct: 202 VLRAKSLISEMVKKGIEP-TVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYN 260

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            L+ G  +T N+   L L+Q    GM D G   +PNV  +G LID LCK R +   +  F
Sbjct: 261 VLMDGYCKTANVKQALHLYQ----GMLDDG--LQPNVVTFGILIDALCKVRELLAARRFF 314

Query: 124 MEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
           ++M   G+  N ++         K     EA  LL  M +  ++P +FTY+ L+   C +
Sbjct: 315 VQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRL 374

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           G V  A  +   M ++G   +   Y+ LI+GYCK  N+E+A+ + +        K F++M
Sbjct: 375 GTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKA------TKFFSDM 428

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           +   + P+     + + G     H+ +VM L
Sbjct: 429 RRNGLRPDALAYAVMLQGHLNAKHMADVMML 459



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 104/237 (43%), Gaps = 21/237 (8%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           T+ V  AL  +   +    +P N VTF  LI   C    +  A +   +MA FG  PNV 
Sbjct: 269 TANVKQALHLYQGMLDDGLQP-NVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVV 327

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
             ++LI G  + GN +    L  EM            P+VF Y  LI   C+   V++  
Sbjct: 328 VFNSLIDGYSKAGNCSEATDLLLEMEKFK------ISPDVFTYSILIKNACRLGTVEEAD 381

Query: 121 DLFMEMKDKGINANTLL--------CKK------TKLVEANRLLELMMQRGLNPVIFTYT 166
           D+   M+ +G+ AN+++        CK+       ++ +A +    M + GL P    Y 
Sbjct: 382 DILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYA 441

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
            +L G+     +   + L   M + G +P+  +  V+  GY  N  ++ A+  SR++
Sbjct: 442 VMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVVRRGYQDNGYLKSALWCSRDL 498


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 165/366 (45%), Gaps = 37/366 (10%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N+LI G+C  GN   + ++ ++M      P++ T +TL+ GL + G     ++  + 
Sbjct: 250 ITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAG----MVEDAEN 305

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           ++  M D G  + P+ F +  L DG   +   +    ++    D G+  N          
Sbjct: 306 VLKEMKDLG--FVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNA 363

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK+ K+ +A  +L   M +GL P    Y  +++GYC  G +  A    ++M ++G  PD
Sbjct: 364 LCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPD 423

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNG--------------------FKKIFN--- 233
             +Y+ LI  +C+   +E A     +M L G                    F K F+   
Sbjct: 424 HLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILK 483

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
           EM+    +P   +    I+ LCK   +LE   +   +E       V I+N LI GCC  G
Sbjct: 484 EMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKG 543

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             E A     ++  K +  ++V YN LI  L   G++ +   LLL +   G   DV T+N
Sbjct: 544 KIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYN 603

Query: 354 TLMISF 359
           +L+  +
Sbjct: 604 SLISGY 609



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 171/366 (46%), Gaps = 66/366 (18%)

Query: 4   VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
           ++GA M   +  ++  +P + + +N LI+ FC  G + +A + V KM   G  P+V T +
Sbjct: 405 LVGARMKIEAMEKQGMKP-DHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYN 463

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
            LI G  R    +    + +EM     D G +  PNV  YG+LI+ LCK   + + + + 
Sbjct: 464 ILIGGYGRKYEFDKCFDILKEM----EDNGTM--PNVVSYGTLINCLCKGSKLLEAQIVK 517

Query: 124 MEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            +M+D+G++    +        C K K+ +A R  + M+++G+   + TY  L++G  + 
Sbjct: 518 RDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMT 577

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           GK++ A  L   ++RKG  PDVF+Y+ LI+GY    NV+  + +  EM  +G K      
Sbjct: 578 GKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIK------ 631

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
                                           PTL         + ++ LI  C K GI 
Sbjct: 632 --------------------------------PTL---------KTYHLLISLCTKEGI- 649

Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
           E+   LF ++S K    D++ YN ++H     G ++K   L   M E    LD  T+N+L
Sbjct: 650 ELTERLFGEMSLK---PDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSL 706

Query: 356 MISFLQ 361
           ++  L+
Sbjct: 707 ILGQLK 712



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 126/273 (46%), Gaps = 20/273 (7%)

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRL 149
           P+VF Y  LIDGLCK + ++  + LF EM  +      I  NTL+   CK     ++ ++
Sbjct: 212 PSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKV 271

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
            E M    + P + T+  LL G    G V  A  +   M   GF+PD F++S+L +GY  
Sbjct: 272 RERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSS 331

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           N   E A+ V    + +G K               +TC+I ++ LCK G + +  E+   
Sbjct: 332 NEKAEAALGVYETAVDSGVKM------------NAYTCSILLNALCKEGKIEKAEEILGR 379

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
                      I+N++I G C+ G    A      +  + +  D +AYN LI    + G+
Sbjct: 380 EMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGE 439

Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           ++     +  M+  G +  V+T+N L+  + +K
Sbjct: 440 MENAEKEVNKMKLKGVSPSVETYNILIGGYGRK 472



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 142/328 (43%), Gaps = 26/328 (7%)

Query: 40  IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99
           I +A+ L   +   G  P+  +   L+  L +T    +T+ +   ++    DF    +P+
Sbjct: 125 ISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILES--DF----RPS 178

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
            F YG  I    K   V +  +LF  MK   I  +          LCK  ++ +A +L +
Sbjct: 179 KFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFD 238

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            M+ R L P + TY  L++GYC  G    +  + + M      P + +++ L+ G  K  
Sbjct: 239 EMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAG 298

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            VE+A NV +EM   GF            VP+ FT +I  DG   N      + ++ T  
Sbjct: 299 MVEDAENVLKEMKDLGF------------VPDAFTFSILFDGYSSNEKAEAALGVYETAV 346

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
            S  ++     + L+   CK G  E A E+  +   K LV + V YN +I    ++G + 
Sbjct: 347 DSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLV 406

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
                + +ME+ G   D   +N L+  F
Sbjct: 407 GARMKIEAMEKQGMKPDHLAYNCLIRRF 434



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 47/242 (19%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN VT+N+LI G  M G + +A  L+ +++  G +P+V T ++LI+G    GN+   + L
Sbjct: 562 LNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIAL 621

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK-------------- 127
           ++EM        GI KP +  Y  LI  LC    ++ T+ LF EM               
Sbjct: 622 YEEMKRS-----GI-KPTLKTYHLLI-SLCTKEGIELTERLFGEMSLKPDLLVYNGVLHC 674

Query: 128 -------DKGINANTLLCKKT-------------------KLVEANRLLELMMQRGLNPV 161
                  +K  N    + +K+                   KL E   L++ M  R + P 
Sbjct: 675 YAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPE 734

Query: 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
             TY  ++ G+C V     A   +  M  KGF+ DV   + L++G  + +  +EA  V  
Sbjct: 735 ADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVIS 794

Query: 222 EM 223
           EM
Sbjct: 795 EM 796



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 13/230 (5%)

Query: 135 TLLCKKTKLV-EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           ++L  ++K++ EA  L   +   G+ P   + T LL+      +  V I +F ++    F
Sbjct: 116 SVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDF 175

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P  F Y   I    K  +V + +            ++FN MK   + P  F  N+ IDG
Sbjct: 176 RPSKFMYGKAIQAAVKLSDVGKGL------------ELFNRMKHDRIYPSVFIYNVLIDG 223

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
           LCK   + +  +LF  +        +  +N+LI G CK G  E + ++  ++   ++   
Sbjct: 224 LCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPS 283

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           ++ +N L+  L K G ++    +L  M++ G   D  TF+ L   +   E
Sbjct: 284 LITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNE 333


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 159/360 (44%), Gaps = 26/360 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            ++V  AL       +     L+     +L+   C  G++ +A ++   M   G  PN  
Sbjct: 15  AAEVRSALAVLARGTKSGDAALDVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEV 74

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
           T   LI G    G+  +   L  EM        G+ +PN++ Y  LI   C+       +
Sbjct: 75  TYTALINGYFVRGHREMGFALFAEMRRD-----GV-EPNLYTYNCLIGEWCRTGEFKSAR 128

Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            LF EM  KG+  N +        LC+ +KL +A +L E M + G+ P I T+  L++GY
Sbjct: 129 LLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGY 188

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
              GK+  A+  F+ M   G  P V +Y+ LI G+C+  ++  A+            + F
Sbjct: 189 GKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAV------------RAF 236

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            +MK   + P   T  I I    K   +     +   +E +  E+ V+ +  L+   C  
Sbjct: 237 LDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCME 296

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G    A +LF  +  K +  + V Y+++I+  G+EG   K   L++ M +NG   +V ++
Sbjct: 297 GKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASY 356



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 12/225 (5%)

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C+   + EA R+ ++M + G+ P   TYT L+NGY + G   +  ALF  M R G  P++
Sbjct: 49  CQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNL 108

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
           ++Y+ LI  +C+    + A            + +F+EM +  VV    + NI I GLC++
Sbjct: 109 YTYNCLIGEWCRTGEFKSA------------RLLFDEMPVKGVVHNVVSYNILIAGLCRH 156

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             + + ++LF  +        +  FN LI G  K G    A   FN++    L   VV Y
Sbjct: 157 SKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTY 216

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           N LI    +   I +     L M+E G A    T+  L+ +F ++
Sbjct: 217 NELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKE 261



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 117/257 (45%), Gaps = 26/257 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++N LI G C    ++DA QL + M   G RP++ T + LI G  + G M   L   
Sbjct: 142 NVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFF 201

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            +M        G+  P+V  Y  LI G C+ R + +    F++MK++G+    +      
Sbjct: 202 NQM-----KAAGL-PPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILI 255

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K+ ++  A  +L  M + GL   + +Y  LL+  C+ GK+  A  LF SM  KG  
Sbjct: 256 AAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVK 315

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+   Y ++I GY +  +  +A+ +  EM  NG            ++P   +  + I  L
Sbjct: 316 PNSVLYDMMIYGYGREGSSYKALRLIMEMRKNG------------LIPNVASYCLTIRLL 363

Query: 255 CKNGHVLEVMELFPTLE 271
           C  G   E   L   +E
Sbjct: 364 CNEGKCQEAEALIDDME 380



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 12/194 (6%)

Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225
           T L++  C  G V  A  +FD M R G  P+  +Y+ LINGY         +   REM  
Sbjct: 42  TALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYF--------VRGHREM-- 91

Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285
            GF  +F EM+   V P  +T N  I   C+ G       LF  + +      V  +N L
Sbjct: 92  -GF-ALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNIL 149

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G C+    + A +LF  +  + +   +V +N+LI   GK G++    +    M+  G 
Sbjct: 150 IAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGL 209

Query: 346 ALDVDTFNTLMISF 359
              V T+N L+  F
Sbjct: 210 PPSVVTYNELICGF 223



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 173 CLVGKVNVAIALFDSMARKGFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           C+  +V  A+A+     + G    DV + + L++  C++ +V EA            +++
Sbjct: 13  CVAAEVRSALAVLARGTKSGDAALDVAACTALVHVCCQSGDVAEA------------RRV 60

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
           F+ M    V P   T    I+G    GH      LF  +     E  +  +N LI   C+
Sbjct: 61  FDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCR 120

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G F+ A  LF+++  K +V +VV+YNILI  L +  ++K    L  +M   G    + T
Sbjct: 121 TGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVT 180

Query: 352 FNTLMISF 359
           FN L+  +
Sbjct: 181 FNLLIDGY 188



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 14/181 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + VT+N LI GFC   +I  A +    M   G  P   T   LI    +   M+    
Sbjct: 210 PPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFM 269

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC-- 138
           +  EM     +  G+ + +V  YG L+  LC +  +   + LF  M  KG+  N++L   
Sbjct: 270 MLSEM-----EKAGL-EVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDM 323

Query: 139 ------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                 ++    +A RL+  M + GL P + +Y   +   C  GK   A AL D M   G
Sbjct: 324 MIYGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLLCNEGKCQEAEALIDDMEHAG 383

Query: 193 F 193
            
Sbjct: 384 L 384



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           ++  L+   CMEG +  A +L + M   G +PN    D +I G  R G+    L+L  EM
Sbjct: 285 SYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEM 344

Query: 86  V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139
             NG+        PNV  Y   I  LC +    + + L  +M+  G+  +  +C+
Sbjct: 345 RKNGL-------IPNVASYCLTIRLLCNEGKCQEAEALIDDMEHAGLQTSETICR 392


>gi|302791145|ref|XP_002977339.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
 gi|300154709|gb|EFJ21343.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
          Length = 336

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 165/344 (47%), Gaps = 47/344 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           V +N++  GF   G + + ++++ KM  +    N+ T +TL+T     GN+   +++  E
Sbjct: 3   VCWNAIATGFSQCGLLDETTKILDKMPAW----NLATWNTLLTSHSLQGNLTGAIRVFHE 58

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----INA-NTL--- 136
           M +          PN+  Y SLI GLC    VD T  L  EM   G    IN  NTL   
Sbjct: 59  MPDK-------NLPNMVTYNSLIHGLCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDG 111

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  ++ EANRL   M  +  NP + TY+ L+ G+C + ++N+A  LFD M ++  +PD
Sbjct: 112 LCKTGRVPEANRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPD 171

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMI--------------LNGFKKIFNEMKLCNVV- 241
           V ++  L+ GYC    V++A  +  EM+              ++ F K+   ++   V+ 
Sbjct: 172 VVTFPTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDDFCKVKRMVEAHRVLK 231

Query: 242 ------------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
                        + F   + +DGLC+ G +   +EL   ++ S      +I+ +LIRG 
Sbjct: 232 RMAKGGSNKNCKADMFAYRMMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGL 291

Query: 290 CKFGIFEIASELFNKLS-CKNLVADVVAYNILIHALGKEGQIKK 332
           C+      A E+  +++  +    +  AY  +I  L +EG+ +K
Sbjct: 292 CQGKELRKAMEVLEEMTLSRKGRPNAKAYKAVIQELAREGRHEK 335



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 17/217 (7%)

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           L E  ++L+ M    L     T+  LL  + L G +  AI +F  M  K  +P++ +Y+ 
Sbjct: 18  LDETTKILDKMPAWNL----ATWNTLLTSHSLQGNLTGAIRVFHEMPDKN-LPNMVTYNS 72

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           LI+G C    V+  + +  EM   G             +P+  T N  IDGLCK G V E
Sbjct: 73  LIHGLCMTNGVDSTLLLMEEMTATG------------CLPDINTYNTLIDGLCKTGRVPE 120

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
              LF  ++   C   V  ++ LI G CK     +A  LF+ +  +  + DVV +  L+ 
Sbjct: 121 ANRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVE 180

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
                G +     LL  M  + C+ DV T+ +L+  F
Sbjct: 181 GYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDDF 217


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 149/340 (43%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN++I   C +G +++A  ++  +  +   PN  T  +LI G  R  N++L   +   
Sbjct: 203 LTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDR 262

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV    D      PN   Y +LI+GLC +  +++  D+  EM  KGI             
Sbjct: 263 MVKDGCD------PNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVS 316

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC      EA  LL  M +RG  P I T+T L++G    GK  +AI L+  M   G +P 
Sbjct: 317 LCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPT 376

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LIN  C     E A  + + M+ +G             +P T T N  I   C 
Sbjct: 377 TVTYNALINQLCVEGRFETAFTIFKWMLSHG------------SLPSTQTYNEIIKCFCL 424

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + + M +F  +  +     V  +N+LI G CK G    A  L   +    L  D   
Sbjct: 425 MGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWT 484

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y  LI    + G+++    L   M E+G + +  T+  ++
Sbjct: 485 YTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 171/379 (45%), Gaps = 40/379 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A++ F   ++    P N +T+N+LI G+C +GN+ +A +L++ M   G +P+  T   LI
Sbjct: 431 AMVIFDKMLKAGSSP-NVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELI 489

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +G  R G +     L      GM + G    PN   Y ++IDG      VD    LF +M
Sbjct: 490 SGFSRGGKLEHATSL----FYGMMEHG--ISPNHVTYTAIIDGYFNLAKVDDALALFWKM 543

Query: 127 KDKG--INANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            + G   ++ T         K   + EA      M+++GL P + TYT  ++G C  G+ 
Sbjct: 544 VESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRT 603

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA---------------MNV-SRE 222
            +A  +F  M ++ + P++++YS LI G C+    E+A                NV +  
Sbjct: 604 GLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYT 663

Query: 223 MILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
            ++ G           ++   M+   + P        + G CKN  V   + +F +++  
Sbjct: 664 TLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTL 723

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             +L +  + +LI   CK    E A  +F  +  K+  +D VA+ +L+  L KEG+    
Sbjct: 724 GFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLC 783

Query: 334 NYLLLSMEENGCALDVDTF 352
             LL  ME   C L+  T+
Sbjct: 784 LKLLHVMESRNCTLNFQTY 802



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 145/303 (47%), Gaps = 25/303 (8%)

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           +I   R  G +    +   E +N   DFG      +  + +L+  L K  +VD  +D+++
Sbjct: 137 MIKSCRNEGEVKRVTQFLSE-INSKYDFGY----TLCSFTTLLIQLGKFDMVDLARDMYI 191

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           +M + GI  + L        LCKK ++ EA  ++  + +    P  FTYT L+ G+C   
Sbjct: 192 KMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNH 251

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
            +++A A+FD M + G  P+  +YS LING C    +EEAM++  EM+  G         
Sbjct: 252 NLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG--------- 302

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              + P  +T  I +  LC  G   E +EL   ++   C   ++ F +LI G  + G FE
Sbjct: 303 ---IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           IA  L++K+    LV   V YN LI+ L  EG+ +    +   M  +G      T+N ++
Sbjct: 360 IAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419

Query: 357 ISF 359
             F
Sbjct: 420 KCF 422



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 151/326 (46%), Gaps = 28/326 (8%)

Query: 43  ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGD-FGGIYKPNVF 101
           A  +  KM   G RP++ T +T+I  L + G +       QE    M   F     PN F
Sbjct: 186 ARDMYIKMLNSGIRPSLLTFNTMINILCKKGRV-------QEAKLIMSHIFRYDAYPNAF 238

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
            Y SLI G C++  +D    +F  M   G + N++        LC + +L EA  +LE M
Sbjct: 239 TYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEM 298

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           +Q+G+ P ++TYT  L   C  G  + A+ L   M ++G +P++ +++ LI+G  ++   
Sbjct: 299 VQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKF 358

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           E A+ +  +M+ +G            +VP T T N  I+ LC  G       +F  +   
Sbjct: 359 EIAIGLYHKMLADG------------LVPTTVTYNALINQLCVEGRFETAFTIFKWMLSH 406

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
                 + +N +I+  C  G  + A  +F+K+       +V+ YN LI+   K+G +   
Sbjct: 407 GSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNA 466

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
             LL  M+ NG   D  T+  L+  F
Sbjct: 467 MRLLEIMKGNGLKPDAWTYTELISGF 492



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 170/402 (42%), Gaps = 74/402 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+++LI G C EG + +A  ++++M   G  P V T    +  L   G  +  +   
Sbjct: 271 NSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAV--- 327

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            E++  M   G +  PN+  + +LI GL +D   +    L+ +M   G+   T+      
Sbjct: 328 -ELLGKMKKRGCV--PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALI 384

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC + +   A  + + M+  G  P   TY  ++  +CL+G +  A+ +FD M + G  
Sbjct: 385 NQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS 444

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           P+V +Y+ LI GYCK  N+  AM +   M  NG K                        +
Sbjct: 445 PNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSL 504

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF-----------------------P 268
           F  M    + P   T    IDG      V + + LF                        
Sbjct: 505 FYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK 564

Query: 269 TLEISNCELF------------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           T  IS  E F            V  + S I G C+ G   +A ++F+++  +N   ++  
Sbjct: 565 TNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYT 624

Query: 317 YNILIHALGKEGQIK-KENY-LLLSMEENGCALDVDTFNTLM 356
           Y+ LI+ L +EG+ +  E Y LL  +   GC  +VDT+ TL+
Sbjct: 625 YSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLV 666



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 137/314 (43%), Gaps = 33/314 (10%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +KV  AL  F   +     P +  T+N +I GF    +I +A     KM   G  PNV T
Sbjct: 531 AKVDDALALFWKMVESGNLP-SSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVIT 589

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK- 120
             + I GL R G   L  K+  EM          Y PN++ Y SLI GLC++   +  + 
Sbjct: 590 YTSFIDGLCRNGRTGLAFKIFHEMEKRN------YFPNLYTYSSLIYGLCQEGRAEDAEM 643

Query: 121 -DLFMEMKDKGINAN-----TL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
            +L   +   G   N     TL   LC + +  EA++L+  M ++GL P    Y  LL G
Sbjct: 644 YNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIG 703

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
            C   KV  A+ +F SM   GF   +  Y  LI   CK   +EEA  + + M+    +K 
Sbjct: 704 ECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTML----EKH 759

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC-- 289
           +N         +     + +DGL K G     ++L   +E  NC L  + +  L R    
Sbjct: 760 WNS--------DEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSA 811

Query: 290 --CKFGIFEIASEL 301
             C   I +I+ +L
Sbjct: 812 LDCAIKIPQISQQL 825


>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 598

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 171/360 (47%), Gaps = 45/360 (12%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +KV+ A++ F   IR  Y+P+   T N L++G C  G I +A +L+  + +FGC P+V T
Sbjct: 155 NKVVDAVVLFRELIRLRYKPVT-YTVNILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVIT 213

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +TLI GL R   ++    L +E+        G + P+V  Y ++I G CK         
Sbjct: 214 YNTLIHGLCRINEVDRARSLLKEVC-----LNGEFAPDVVSYTTIISGYCK--------- 259

Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
                              +K+ E N L   M++ G  P  FT+  L+ G+  +G +  A
Sbjct: 260 ------------------FSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGDMASA 301

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
           +AL++ M  +G +PDV +++ LINGY +   V +AM+            ++++M   N+ 
Sbjct: 302 LALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMD------------MWHKMNDKNIG 349

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
              +T ++ + GLC N  + +  ++   L  S+      I+N +I G CK G  + A+++
Sbjct: 350 ATLYTFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKI 409

Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             ++       D + + ILI     +G++ +   +   M   GCA D  T N L    L+
Sbjct: 410 VAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGIFHKMLAVGCAPDEITVNNLRSCLLK 469



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 146/342 (42%), Gaps = 46/342 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V +N L      +  + DA  L +++     +P   T + L+ GL R G ++   +L
Sbjct: 139 VNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGLCRAGEIDEAFRL 198

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
               +N +  FG +  P+V  Y +LI GL                           C+  
Sbjct: 199 ----LNDLRSFGCL--PDVITYNTLIHGL---------------------------CRIN 225

Query: 142 KLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
           ++  A  LL E+ +     P + +YT +++GYC   K+     LF  M R G  P+ F++
Sbjct: 226 EVDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTF 285

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           + LI G+ K  ++  A+ +  +M++ G             VP+  T    I+G  + G V
Sbjct: 286 NALIGGFGKLGDMASALALYEKMLVQG------------CVPDVATFTSLINGYFRLGQV 333

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
            + M+++  +   N    +  F+ L+ G C       A ++   L+  ++V     YN +
Sbjct: 334 HQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPV 393

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           I    K G + + N ++  ME N C  D  TF  L+I    K
Sbjct: 394 IDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMK 435


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 178/375 (47%), Gaps = 40/375 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           KV  AL  F   +++  +P N  T+N +I   CM G + +A ++  +M   G  PN+ + 
Sbjct: 366 KVDEALTLF-DVMKKDAKP-NISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSV 423

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           + ++  L +   +    ++  E  +  G       PN   Y SLIDGL K   +D    L
Sbjct: 424 NIMVDRLCKANQLEEAHRIF-ESASERG-----CNPNSVTYCSLIDGLGKKGKIDDAYRL 477

Query: 123 FMEMKDKGINANTLLCKKTKLV----------EANRLLELMMQRGLNPVIFTYTPLLNGY 172
           F +M D G +AN ++   T L+          + +++ + M++RG  P +     LLN Y
Sbjct: 478 FEKMLDAGHDANPIIY--TSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDL----TLLNTY 531

Query: 173 --CL--VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
             C+   G+V    A+F+ M   GF+PDV SYS+LI+G  K     E  N+ + M   GF
Sbjct: 532 MDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGF 591

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
                         +    N  +DGLCK+G V +  E+   +++ +    V  + S++ G
Sbjct: 592 AL------------DARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDG 639

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
             K    + A  LF +   K +  +V+ Y+ LI   GK G+I +   +L  M + G   +
Sbjct: 640 LAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 699

Query: 349 VDTFNTLMISFLQKE 363
           V T+N+LM + ++ E
Sbjct: 700 VYTWNSLMDALVKTE 714



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 158/342 (46%), Gaps = 26/342 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + + SLI+ F M G   D  ++ K+M   G RP++T  +T +  + + G +     + 
Sbjct: 489 NPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIF 548

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M +    FG  + P+V  Y  LI GL K     +T ++F  M  +G   +        
Sbjct: 549 EDMKS----FG--FLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVV 602

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK  K+ +A  +LE M  + ++P + TY  +++G   + +++ A  LF+    KG  
Sbjct: 603 DGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIE 662

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
            +V  YS LI+G+ K   ++EA  +  EM+  G            + P  +T N  +D L
Sbjct: 663 LNVILYSSLIDGFGKVGRIDEAYLILEEMMKKG------------LTPNVYTWNSLMDAL 710

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K   + E +  F +++   C      ++ LI G C+   +  A   + ++  + L+ +V
Sbjct: 711 VKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNV 770

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           V Y  +I  L K G I     L    + NG   D  +FN L+
Sbjct: 771 VTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALI 812



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 146/362 (40%), Gaps = 87/362 (24%)

Query: 11  FGSFIRRCYRPLNDVTF-NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           +   IRR  RP  D+T  N+ +      G +     + + M +FG  P+V +   LI GL
Sbjct: 513 YKEMIRRGGRP--DLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGL 570

Query: 70  RRTGNMNLTLKLHQEM---------------VNGMGDFGGIYK--------------PNV 100
            + G    T  + Q M               V+G+   G + K              P V
Sbjct: 571 TKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTV 630

Query: 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--------KKTKLVEANRLLEL 152
             YGS++DGL K   +D+   LF E K KGI  N +L         K  ++ EA  +LE 
Sbjct: 631 ATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEE 690

Query: 153 MMQRGLNPVIFT-----------------------------------YTPLLNGYCLVGK 177
           MM++GL P ++T                                   Y+ L+NG C V K
Sbjct: 691 MMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQK 750

Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
            N A   +  M ++G +P+V +Y+ +I+G  K  N+ +A +            +F   K 
Sbjct: 751 YNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYS------------LFERFKT 798

Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
              +P++ + N  I+G+      +E  ++F    +  C L V+   SL+    K    E 
Sbjct: 799 NGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDALNKTECLEQ 858

Query: 298 AS 299
           A+
Sbjct: 859 AA 860



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 150/339 (44%), Gaps = 29/339 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM- 85
           F +L++    EG +  A  LV ++      P++   +  I    + G++++  K   E+ 
Sbjct: 214 FTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELK 273

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-----GINANTLLC-- 138
            +G+       +P+   Y S++  LCK   + + ++LF +M+ +         NT++   
Sbjct: 274 AHGL-------RPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGY 326

Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
               +  +A +LLE + +RG  P + ++  +L       KV+ A+ LFD M +K   P++
Sbjct: 327 GSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVM-KKDAKPNI 385

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+++I+  C    V EA             KI +EM+L  + P   + NI +D LCK 
Sbjct: 386 STYNIIIDMLCMAGRVNEAY------------KIRDEMELAGLFPNLLSVNIMVDRLCKA 433

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             + E   +F +     C      + SLI G  K G  + A  LF K+      A+ + Y
Sbjct: 434 NQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIY 493

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             LI      G+ +  + +   M   G   D+   NT M
Sbjct: 494 TSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYM 532



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 159/382 (41%), Gaps = 63/382 (16%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C  P + V +N  I  F   G++  A +   ++   G RP+  +  +++  L + G +  
Sbjct: 241 CLEP-DIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGE 299

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----IN 132
             +L  +M     D      P  + Y ++I G       D    L   ++++G     ++
Sbjct: 300 AEELFGQM-EAERDV-----PCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVS 353

Query: 133 ANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
            N++L    KK K+ EA  L ++M ++   P I TY  +++  C+ G+VN A  + D M 
Sbjct: 354 FNSILTCLGKKRKVDEALTLFDVM-KKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEME 412

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
             G  P++ S +++++  CK   +EEA  +       G          CN  P + T   
Sbjct: 413 LAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERG----------CN--PNSVTYCS 460

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG--------------------- 288
            IDGL K G + +   LF  +  +  +    I+ SLIR                      
Sbjct: 461 LIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRG 520

Query: 289 -------------CC-KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
                        C  K G  E    +F  +     + DV +Y+ILIH L K GQ ++ +
Sbjct: 521 GRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETS 580

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            +  +M + G ALD   +N ++
Sbjct: 581 NIFQAMSQQGFALDARAYNAVV 602



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 48/337 (14%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           +PL    +N+++    +  ++    +++++M+  G       C  L+  L R+  +    
Sbjct: 104 QPLPPDAYNAVLP--FLSHDLAALEKVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAF 161

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139
           ++    +  M      ++P    Y  LI  L + R  ++  +L  +M+D G   +  L  
Sbjct: 162 RV----IGAMRHLK--FRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPL-- 213

Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
                                    +T L+      G++  A+AL D +      PD+  
Sbjct: 214 -------------------------FTTLVRALAREGQMEPALALVDEVKGSCLEPDIVL 248

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           Y+V I+ + K  +V+ A             K F+E+K   + P+  +    +  LCK G 
Sbjct: 249 YNVCIDCFGKAGSVDMAW------------KFFHELKAHGLRPDDVSYTSMVWVLCKAGR 296

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + E  ELF  +E          +N++I G      F+ A +L  +L  +  +  VV++N 
Sbjct: 297 LGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNS 356

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           ++  LGK+ ++  E   L  + +     ++ T+N ++
Sbjct: 357 ILTCLGKKRKV-DEALTLFDVMKKDAKPNISTYNIII 392



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 1/133 (0%)

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
           ++   M+     P      + I  L +       +EL   ++    E+ V +F +L+R  
Sbjct: 162 RVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRAL 221

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
            + G  E A  L +++    L  D+V YN+ I   GK G +         ++ +G   D 
Sbjct: 222 AREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPD- 280

Query: 350 DTFNTLMISFLQK 362
           D   T M+  L K
Sbjct: 281 DVSYTSMVWVLCK 293


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 156/344 (45%), Gaps = 27/344 (7%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           D     L+   C  G   ++   ++ + + G +P+V  C  LI G   + N+   +++  
Sbjct: 62  DAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRV-M 120

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           E++   GD      P+V+ Y ++I G  K   +D    +F  M+ +G + + +       
Sbjct: 121 EILETYGD------PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIG 174

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            LC + KL  A  +++ +++ G  P + TYT L+    L G++N A+ LFD +  +G  P
Sbjct: 175 SLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRP 234

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D+++Y+ +I G CK    + A++  R +   G          CN  P+  + NI +    
Sbjct: 235 DLYTYNAIIRGICKEGMEDRALDFVRHLSARG----------CN--PDVVSYNILLRSFL 282

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
                 +   L   + +S CE  V   + LI   C+ G    A  +   +  K L  D  
Sbjct: 283 NKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSY 342

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +Y+ LI A  KEG++      L  M  +GC  D+  +NT++ + 
Sbjct: 343 SYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATL 386



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 174/366 (47%), Gaps = 29/366 (7%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
            +++  A   F     R + P + VT+N +I   C  G +  A +++ ++   GC+P+V 
Sbjct: 144 ANQIDSANQVFDRMRSRGFSP-DVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVI 202

Query: 61  TCDTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           T   LI      G +N  L+L  E+V+ G+       +P+++ Y ++I G+CK+ + D+ 
Sbjct: 203 TYTILIEATILEGRINEALELFDELVSRGL-------RPDLYTYNAIIRGICKEGMEDRA 255

Query: 120 KDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
            D    +  +G N + +           K++  +  RL++ M+  G  P + T++ L++ 
Sbjct: 256 LDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISS 315

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
           +C  G+V  A+ + + M  KG  PD +SY  LI+ +CK   ++ A+    +M+ +G    
Sbjct: 316 FCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDG---- 371

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
                    +P+    N  +  LCK G     +++F  L+   C   V  +N++      
Sbjct: 372 --------CLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWS 423

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A E+ +++  K +  D + YN LI  L ++G + +   LL+ ME       V +
Sbjct: 424 CGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVIS 483

Query: 352 FNTLMI 357
           FN +++
Sbjct: 484 FNIVLL 489



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 25/295 (8%)

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGS----LIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           K H   V    +F   + PN+    +    L++  C+    +++      +  KG   + 
Sbjct: 38  KTHLRNVTSSAEFRQPHFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDV 97

Query: 136 LLCKK--------TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
           +LC K          L +A R++E++   G +P +++Y  +++G+    +++ A  +FD 
Sbjct: 98  VLCTKLIKGFFNSRNLKKAMRVMEILETYG-DPDVYSYNAMISGFSKANQIDSANQVFDR 156

Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
           M  +GF PDV +Y+++I   C    +E A  V  E++ +G K            P   T 
Sbjct: 157 MRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCK------------PSVITY 204

Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
            I I+     G + E +ELF  L        +  +N++IRG CK G+ + A +    LS 
Sbjct: 205 TILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSA 264

Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           +    DVV+YNIL+ +   + + +    L+  M  +GC  +V T + L+ SF ++
Sbjct: 265 RGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCRE 319



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 122/256 (47%), Gaps = 26/256 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT + LI  FC EG +R+A  +++ M   G  P+  + D LI+   + G ++L ++  
Sbjct: 305 NVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYL 364

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL- 136
           ++MV+     G +  P++  Y +++  LCK    D   D+F ++ + G        NT+ 
Sbjct: 365 EKMVSD----GCL--PDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMF 418

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L      ++A  ++  M+++G++P   TY  L++  C  G V+ AI L   M    F 
Sbjct: 419 SALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQ 478

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P V S+++++ G CK   V E + +   M+  G             +P   +  + I+G+
Sbjct: 479 PTVISFNIVLLGMCKAHRVFEGIELLITMVEKG------------CLPNETSYVLLIEGI 526

Query: 255 CKNGHVLEVMELFPTL 270
              G   E MEL  +L
Sbjct: 527 AYAGWRAEAMELANSL 542


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 178/404 (44%), Gaps = 73/404 (18%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSLI G+   G + ++  L ++M   GC P+V T + LI    +   M        E
Sbjct: 288 VTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHE 347

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           M N      G+ KPNV  Y +LID LCK+ ++ Q     ++M+  G++ N          
Sbjct: 348 MKN-----SGL-KPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDA 401

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK   L +A +L + M+Q  +   + TYT LL+G C  G++  A  LF +M + G  P+
Sbjct: 402 NCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPN 461

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSR---------EMILNGF--------------KKIFN 233
           + +Y+ L++G+ KN  VE A+ + +         +++L G               + + +
Sbjct: 462 LKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMS 521

Query: 234 EMKLCNVVPETFTCNI-----------------------------------FIDGLCKNG 258
           EMK C +   +    I                                    IDGLCK G
Sbjct: 522 EMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKG 581

Query: 259 HVLEVMELFPTLEISNCEL-FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
            V E ++ F  +   N +   V +  +LI G CK    E A +LF+++  KN+V D +AY
Sbjct: 582 LVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAY 641

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             LI    K    ++   +   M E G  LD+  + +L+    Q
Sbjct: 642 TALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQ 685



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 138/303 (45%), Gaps = 27/303 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            N VT+ +L+ G C EG + +A  L + M   G  PN+ T   L+ G  +        ++
Sbjct: 425 FNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNK------RV 478

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--- 138
              +           KP++  YG++I GLC    +++ + +  EMK  GI AN+++    
Sbjct: 479 ENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIR 538

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K  K VEA  LL+ M   G+   I T+  L++G C  G V  AI  F  MA    
Sbjct: 539 MDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNL 598

Query: 194 MP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
            P +V   + LI+G CKN  +E A            KK+F+EM+  N+VP+       ID
Sbjct: 599 QPNNVAVCTALIDGLCKNNYIEAA------------KKLFDEMQDKNMVPDKIAYTALID 646

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           G  K+    E + +   +     EL +  + SL+ G  +  + + A    N++  K +V 
Sbjct: 647 GNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVP 706

Query: 313 DVV 315
           D +
Sbjct: 707 DEI 709



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 144/330 (43%), Gaps = 45/330 (13%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F++L   F   G + +A Q   +M  F   P   +C+  +  L +TG  +L+ K  ++MV
Sbjct: 185 FDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDMV 244

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
                  GI + +VF Y  +I  +CK+  +   K LF +MK                   
Sbjct: 245 G-----AGIAQ-SVFTYNIMIGYMCKEGDMVTAKSLFHQMK------------------- 279

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
                   Q GL P I TY  L++GY  +G ++ +  LF+ M   G  PDV +Y+ LIN 
Sbjct: 280 --------QMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINC 331

Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
           +CK   + +A +   EM  +G K            P   T +  ID LCK   + + ++ 
Sbjct: 332 FCKYEQMPKAFHFLHEMKNSGLK------------PNVVTYSTLIDALCKEHMLQQAIKF 379

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +           + SLI   CK G    A +L +++    +  +VV Y  L+  L K
Sbjct: 380 LLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCK 439

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           EG++ +   L  +M + G   ++ T+  L+
Sbjct: 440 EGRMMEAEDLFRAMIKAGVTPNLKTYTALV 469



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 26/345 (7%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N +I   C EG++  A  L  +M   G  P++ T ++LI G  + G ++ +  L +EM
Sbjct: 254 TYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEM 313

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
                D G   +P+V  Y +LI+  CK   + +      EMK+ G+  N +        L
Sbjct: 314 ----KDVGC--EPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDAL 367

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+  L +A + L  M + GL+P  FTYT L++  C  G ++ A+ L D M +     +V
Sbjct: 368 CKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNV 427

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ L++G CK   + EA ++ R MI  G            V P   T    + G  KN
Sbjct: 428 VTYTTLLDGLCKEGRMMEAEDLFRAMIKAG------------VTPNLKTYTALVHGHIKN 475

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V   +EL   ++    +  + ++ ++I G C     E    + +++    + A+ V Y
Sbjct: 476 KRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIY 535

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            I + A  K G+  +   LL  M + G  + + TF  L+    +K
Sbjct: 536 TIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKK 580



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 19/223 (8%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           S ++ C    N V +   +  +   G   +A  L+++M   G    + T   LI GL + 
Sbjct: 521 SEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKK 580

Query: 73  GNMNLTLKLHQEMVN---GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
           G       L +E ++    M DF  +   NV    +LIDGLCK+  ++  K LF EM+DK
Sbjct: 581 G-------LVEEAIDYFARMADFN-LQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDK 632

Query: 130 GINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
            +  + +          K     EA  +   M + G+   +  YT L+ G      V  A
Sbjct: 633 NMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQA 692

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
               + M  KG +PD      L+  Y +  +++EA+ +  E++
Sbjct: 693 RMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDELL 735



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 98/239 (41%), Gaps = 28/239 (11%)

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGK---VNVAIALFDSMARKG--FMPDVFSYSVL 203
           L+EL     L    F +     G+CL  +   + V I  +  M      F+ ++ S   +
Sbjct: 102 LVELKQDPKLALKFFRWAKTKFGFCLTTESYCLLVHILFYARMYFDANFFLKELISSRRI 161

Query: 204 INGYCKNFNVEEAMNVSREMILNGFK-------------------KIFNEMKLCNVVPET 244
           + G    F+V E +  +R + + GF                    + F+ M    V P+ 
Sbjct: 162 LPG----FDVFEVLWSTRNVCVPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKA 217

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            +CN F+  L K G      + F  +  +     V  +N +I   CK G    A  LF++
Sbjct: 218 RSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQ 277

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +    L  D+V YN LI   GK G + +   L   M++ GC  DV T+N L+  F + E
Sbjct: 278 MKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYE 336


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 170/382 (44%), Gaps = 72/382 (18%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           +RR     N++T+N+LI GF  EG I  A+++  +M+ F   PN  T +TLI G   TGN
Sbjct: 271 MRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGN 330

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
           +   L+L   MV+      G+ +PN   YG+L++GL K+        +   M+  G+  +
Sbjct: 331 IGEALRLMDVMVSH-----GL-RPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVS 384

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
            +        LCK   L EA +LL+ M++  +NP + T++ L+NG+  VGK+N A  +  
Sbjct: 385 HISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMC 444

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMN---------------------------- 218
            M + G +P+   YS LI  YCK   ++EA+N                            
Sbjct: 445 KMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYG 504

Query: 219 ---------------------VSREMILNGFK---------KIFNEMKLCNVVPETFTCN 248
                                V+ + I+NG+           +F++M      P  FT  
Sbjct: 505 KLEEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYG 564

Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
             + GLC  GH+ E ++ F  L      +   IFN+ +   C+ G    A  L N++   
Sbjct: 565 GLLKGLCIGGHINEALKFFHRLRCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTN 624

Query: 309 NLVADVVAYNILIHALGKEGQI 330
           + + D   Y  LI  L K+G+I
Sbjct: 625 DFLPDNFTYTNLIAGLCKKGKI 646



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 160/366 (43%), Gaps = 36/366 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +++V FN+ +   C  GN+ DA  L+ +M T    P+  T   LI GL + G +   L  
Sbjct: 593 VDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAAL-- 650

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
              +++G     G+  PN   Y SL+DGL K         +F EM +K +  +T+     
Sbjct: 651 ---LLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVI 707

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                +K K  + N +L  M  + L   + TY  LL+GY     +     L+  M R GF
Sbjct: 708 IDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGF 767

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG--------------------FKKIFN 233
           +PD FS+  LI GYC++ + + A+ + R + L G                     KK F 
Sbjct: 768 LPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFE 827

Query: 234 EMKLCN---VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
            +K  N   V+P   T N   +GL +     +   +   L  S      + + +LI G C
Sbjct: 828 LVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITLINGMC 887

Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
           + G  + A +L +++    + +  VA + ++  L    +I+   ++L  M E      V 
Sbjct: 888 RVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQIIPTVA 947

Query: 351 TFNTLM 356
           TF TLM
Sbjct: 948 TFTTLM 953



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 145/338 (42%), Gaps = 44/338 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T N L+  FC  G + +A   +  M+  G  PN  T D +I G   +G+      +  +M
Sbjct: 492 TCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKM 551

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
            N  G F     P++F YG L+ GLC    +++    F  ++          C       
Sbjct: 552 -NSFGHF-----PSLFTYGGLLKGLCIGGHINEALKFFHRLR----------C------- 588

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
                   +   ++ VIF     L   C  G ++ AIAL + M    F+PD F+Y+ LI 
Sbjct: 589 --------IPNAVDNVIFNTK--LTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIA 638

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G CK   +  A+ +S + I  G         L +  P  +T    +DGL K+GH    + 
Sbjct: 639 GLCKKGKIVAALLLSGKAIEKG---------LLSPNPAVYTS--LVDGLLKHGHARAALY 687

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           +F  +   + E     FN +I    + G     +++ + +  KNL  ++  YNIL+H   
Sbjct: 688 IFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILLHGYA 747

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           K   + +   L   M  +G   D  ++++L++ + Q +
Sbjct: 748 KRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSK 785



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 149/359 (41%), Gaps = 58/359 (16%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
            TFN L+   C  G  ++A  L++KM   G  P   T +TL+    + G      K   +
Sbjct: 176 ATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGR----YKAASQ 231

Query: 85  MVNGMGDFG-GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143
           +++ M   G G+   +V  Y   ID LC+D                           ++ 
Sbjct: 232 LIDCMASKGIGV---DVCTYNVFIDNLCRD---------------------------SRS 261

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            +   LL+ M +  + P   TY  L++G+   GK+ VA  +FD M+    +P+  +Y+ L
Sbjct: 262 AKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTL 321

Query: 204 INGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNV 240
           I G+C   N+ EA+ +   M+ +G +                        I   M++  V
Sbjct: 322 IAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGV 381

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
                +    IDGLCKNG + E ++L   +   +    V  F+ LI G  + G    A E
Sbjct: 382 RVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKE 441

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           +  K+    LV + + Y+ LI+   K G +K+       M  +G   D  T N L+ +F
Sbjct: 442 IMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATF 500



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 123/258 (47%), Gaps = 26/258 (10%)

Query: 22   LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
            ++  TFN LI  FC    ++ A +LVK+M  F   PNV T + L  GL RT + +   ++
Sbjct: 804  IDRFTFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRV 863

Query: 82   HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             Q ++      G +  P    Y +LI+G+C+   +     L  EMK  GI+++ +     
Sbjct: 864  LQVLLES----GSV--PTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAI 917

Query: 137  ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
               L    K+  A  +L+LM++  + P + T+T L++ YC    V  A+ L   M     
Sbjct: 918  VRGLANSKKIENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIMEHCHV 977

Query: 194  MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
              DV +Y+VLI+G C N ++E A             K++ EMK  ++ P T    + ID 
Sbjct: 978  KLDVVAYNVLISGLCANGDIEAAF------------KLYEEMKQRDLWPNTSIYIVLIDS 1025

Query: 254  LCKNGHVLEVMELFPTLE 271
             C   + +E  +L   ++
Sbjct: 1026 FCAGNYQIESEKLLRDIQ 1043



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 153/363 (42%), Gaps = 39/363 (10%)

Query: 6    GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
             AL  F   + +   P + V FN +I  +  +G     + ++  M +     N+ T + L
Sbjct: 684  AALYIFEEMLNKDVEP-DTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNIL 742

Query: 66   ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            + G  +   M     L+++M+         + P+ F + SLI G C+ +  D    +   
Sbjct: 743  LHGYAKRHAMARCFMLYKDMIRHG------FLPDKFSWHSLILGYCQSKSFDVAIKILRW 796

Query: 126  MKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
            +  +G   +        T  C++ ++ +A  L++ M Q  + P + TY  L NG      
Sbjct: 797  ITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSD 856

Query: 178  VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM-------------- 223
             + A  +   +   G +P    Y  LING C+  N++ AM +  EM              
Sbjct: 857  FHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSA 916

Query: 224  ILNGF---KKIFNEMKLCN------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274
            I+ G    KKI N + + +      ++P   T    +   CK  +V + +EL   +E  +
Sbjct: 917  IVRGLANSKKIENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIMEHCH 976

Query: 275  CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL-GKEGQIKKE 333
             +L V  +N LI G C  G  E A +L+ ++  ++L  +   Y +LI +      QI+ E
Sbjct: 977  VKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSFCAGNYQIESE 1036

Query: 334  NYL 336
              L
Sbjct: 1037 KLL 1039



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 24/244 (9%)

Query: 137 LCKKTKLV-EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
           +C + ++V +A +   LM  RGLNP ++T   +L       KV++  + F  M  KG  P
Sbjct: 114 VCLRNRMVGDAVQTFYLMGFRGLNPSVYTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICP 173

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIF 232
           DV ++++L+N  C+    + A  + R+M              +LN +          ++ 
Sbjct: 174 DVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLI 233

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           + M    +  +  T N+FID LC++    +   L   +  +        +N+LI G  + 
Sbjct: 234 DCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVRE 293

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G  E+A+++F+++S  NL+ + + YN LI      G I +   L+  M  +G   +  T+
Sbjct: 294 GKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTY 353

Query: 353 NTLM 356
             L+
Sbjct: 354 GALL 357



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 16/205 (7%)

Query: 159 NPVIFTYTPLLNGYCLVGK-VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           NP +F    LL   CL  + V  A+  F  M  +G  P V++ ++++    K        
Sbjct: 104 NPAVF---DLLIRVCLRNRMVGDAVQTFYLMGFRGLNPSVYTCNMVLGSLVK-------- 152

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
               E  ++ F   F  M    + P+  T NI ++ LC+ G       L   +E S    
Sbjct: 153 ----EQKVDMFWSFFKGMLAKGICPDVATFNILLNALCERGKFKNAGFLLRKMEESGVYP 208

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
               +N+L+   CK G ++ AS+L + ++ K +  DV  YN+ I  L ++ +  K   LL
Sbjct: 209 TAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLL 268

Query: 338 LSMEENGCALDVDTFNTLMISFLQK 362
             M  N    +  T+NTL+  F+++
Sbjct: 269 KRMRRNMVYPNEITYNTLISGFVRE 293



 Score = 45.1 bits (105), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 25   VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
             TF +L+  +C E N+  A +L   M     + +V   + LI+GL   G++    KL++E
Sbjct: 947  ATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAFKLYEE 1006

Query: 85   MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
            M     D      PN   Y  LID  C      +++ L  +++D+
Sbjct: 1007 M--KQRDLW----PNTSIYIVLIDSFCAGNYQIESEKLLRDIQDR 1045


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 138/295 (46%), Gaps = 20/295 (6%)

Query: 5   LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCM-EGNIRDASQLVKKMATFGCRPNVTTCD 63
           L +   F   +R+   P    + N LIK FC   G +  A  L + M+  GC P+  T  
Sbjct: 165 LKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYG 224

Query: 64  TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
           TLI GL R  ++    +L QEM     +  G   P+V  Y S+I GLC+   VD+   L 
Sbjct: 225 TLINGLCRFRSIVEAKELLQEM-----ETKGC-SPSVVTYTSIIHGLCQLNNVDEAMRLL 278

Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
            +MKDK I  N           CK      A  +LELM+Q+ L P + +Y+ LLNG C  
Sbjct: 279 EDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNE 338

Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235
           GK+N A+ +FD M  +GF PD   Y  ++N  C     +EA N   EM+L G K      
Sbjct: 339 GKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITW 398

Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
            L        T N  I GLC   +     +L+ ++      + V+ FNSL++  C
Sbjct: 399 SL-----HVRTHNRVIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFC 448



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 155/346 (44%), Gaps = 53/346 (15%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL-RRTGNMNLTLKLHQE 84
           ++ S++     E  ++ A +  + M   G  P VT+ + LI    + +G M+  + L + 
Sbjct: 151 SYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRT 210

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M N   +      P+ + YG+LI+GLC+ R                            +V
Sbjct: 211 MSNHGCE------PDSYTYGTLINGLCRFR---------------------------SIV 237

Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
           EA  LL+ M  +G +P + TYT +++G C +  V+ A+ L + M  K   P+VF+YS L+
Sbjct: 238 EAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLM 297

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           +G+CK  +   A ++   MI    +            P   + +  ++GLC  G + E +
Sbjct: 298 DGFCKTGHSSRARDILELMIQKRLR------------PNMISYSTLLNGLCNEGKINEAL 345

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY------- 317
           E+F  +++   +    ++  ++   C    F+ A+   +++    +  + + +       
Sbjct: 346 EIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRTH 405

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           N +IH L       +   L LS+   G ++ VDTFN+L+  F  K+
Sbjct: 406 NRVIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCNKK 451



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 14/230 (6%)

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKG-INANTLLCKKTKLVEANRLLELMMQRGLNPV 161
           YG +   L   R+  + +D   +  +K  I+   +L ++ +L  A R    M + G+ P 
Sbjct: 124 YGRIHKPLDSIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPT 183

Query: 162 IFTYTPLLNGYCL-VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
           + +   L+  +C   G ++ A+ LF +M+  G  PD ++Y  LING C+  ++ EA    
Sbjct: 184 VTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEA---- 239

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                   K++  EM+     P   T    I GLC+  +V E M L   ++  N E  V 
Sbjct: 240 --------KELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVF 291

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
            ++SL+ G CK G    A ++   +  K L  ++++Y+ L++ L  EG+I
Sbjct: 292 TYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKI 341



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 21/218 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ S+I G C   N+ +A +L++ M      PNV T  +L+ G  +TG+ +    + + 
Sbjct: 256 VTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILEL 315

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------L 136
           M+          +PN+  Y +L++GLC +  +++  ++F  MK +G   +          
Sbjct: 316 MIQKR------LRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNC 369

Query: 137 LCKKTKLVEANRLLELMMQRGLNP-------VIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
           LC  ++  EA   L+ M+  G+ P        + T+  +++G C +   N A  L+ S+ 
Sbjct: 370 LCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVL 429

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
            +G    V +++ L+  +C   ++ +   +  EM++NG
Sbjct: 430 TRGISITVDTFNSLLKCFCNKKDLPKTSRILDEMVING 467



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 13/216 (6%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           K +++ R+   M      P   +Y  +L       ++  A   +  M + G  P V S +
Sbjct: 129 KPLDSIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLN 188

Query: 202 VLINGYCKNF-NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260
           VLI  +CKN   +++AM++ R M  +G +            P+++T    I+GLC+   +
Sbjct: 189 VLIKAFCKNSGTMDKAMHLFRTMSNHGCE------------PDSYTYGTLINGLCRFRSI 236

Query: 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320
           +E  EL   +E   C   V  + S+I G C+    + A  L   +  KN+  +V  Y+ L
Sbjct: 237 VEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSL 296

Query: 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           +    K G   +   +L  M +     ++ +++TL+
Sbjct: 297 MDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLL 332



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 99/234 (42%), Gaps = 21/234 (8%)

Query: 134 NTLLCKKTKLVEAN--RLLELMMQRGLNPVIFTYTPLL----NGYCLVGKVNVAIALFDS 187
           NT     +KL+ AN  RL E ++ R     I     +L      Y  + K   +I +F  
Sbjct: 80  NTFSLMISKLISANQFRLAETLLDRMKEEKIDVTEDILLSICRAYGRIHKPLDSIRVFHK 139

Query: 188 MARKGFMPDVFSY-SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
           M      P   SY SVL            A+ V    + + F+  + +M+   + P   +
Sbjct: 140 MQDFHCKPTEKSYISVL------------AILVEENQLKSAFR-FYRDMRKMGIPPTVTS 186

Query: 247 CNIFIDGLCKN-GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
            N+ I   CKN G + + M LF T+    CE     + +LI G C+F     A EL  ++
Sbjct: 187 LNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEM 246

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             K     VV Y  +IH L +   + +   LL  M++     +V T+++LM  F
Sbjct: 247 ETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGF 300


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 162/343 (47%), Gaps = 26/343 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+  LI   C  G + +A +L  KM   G +P+     TL+      G+++ T K    
Sbjct: 298 VTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLD-TFKEFWS 356

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTLLC- 138
            +   G     Y P+V  +  L+D LCK R  D+    F  M+ +GI       NTL+C 
Sbjct: 357 QMEADG-----YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICG 411

Query: 139 --KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
             +  ++ +A +LL+ M   G+ P  +TY   ++ +   G+   A+  F+ M  KG +P+
Sbjct: 412 LLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPN 471

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + + +  +    +   + EA            K +FN ++   + P++ T N+ +    K
Sbjct: 472 IVACNASLYSLAEMGRLREA------------KTMFNGLRENGLAPDSVTYNMMMKCYSK 519

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V E + L   +  + CE  V + NSLI    K G  + A ++F+++    L   VV 
Sbjct: 520 VGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVT 579

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           YN L+  LGKEG+++K   L  SM    C+ +  +FNTL+  F
Sbjct: 580 YNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCF 622



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 150/327 (45%), Gaps = 26/327 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTF  L+   C   +  +A      M   G  PN+ T +TLI GL R G +   LKL   
Sbjct: 368 VTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL--- 424

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT--- 141
            ++ M   G   +P  + Y + ID   K     +  + F +MK KGI  N + C  +   
Sbjct: 425 -LDTMESVG--VQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYS 481

Query: 142 -----KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
                +L EA  +   + + GL P   TY  ++  Y  VG+V+ A+ L   M R G  PD
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPD 541

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           V   + LI+   K   V+EA             ++F+ MK   + P   T N  + GL K
Sbjct: 542 VIVVNSLIDSLYKAGRVDEAW------------QMFDRMKDMKLSPTVVTYNTLLSGLGK 589

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V + +ELF ++    C      FN+L+   CK    E+A ++F+K++  +   DV+ 
Sbjct: 590 EGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT 649

Query: 317 YNILIHALGKEGQIKKENYLLLSMEEN 343
           YN +I+ L KE ++    +    ++++
Sbjct: 650 YNTVIYGLIKENKVNHAFWFFHQLKKS 676



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 15/229 (6%)

Query: 7    ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
            AL  F   +   +RP    T+  LI G    G + +A +L ++M+ +GC+PN    + LI
Sbjct: 877  ALDFFYDLVSSDFRP-TPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILI 935

Query: 67   TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
             G  + G+     +L + MVN      GI +P++  Y  L+D LC    VD+    F E+
Sbjct: 936  NGYGKIGDTETACQLFKRMVNE-----GI-RPDLKSYTILVDCLCLAGRVDEALYYFNEL 989

Query: 127  KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            K  G++ + +        L K  ++ EA  L   M  RG+ P ++TY  L+    L G V
Sbjct: 990  KSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMV 1049

Query: 179  NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
              A  +++ +   G  PDVF+Y+ LI GY  + N E A  V + M+++G
Sbjct: 1050 EQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDG 1098



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 162/374 (43%), Gaps = 61/374 (16%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ ++ K   + G +R  + ++ KM   G   N  + + LI  L ++G     L++++ M
Sbjct: 159 TYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRM 218

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LL 137
           V+      G+ KP++  Y +L+  L K R  +    L  EM+D G+  N         +L
Sbjct: 219 VSE-----GL-KPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVL 272

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF------------ 185
            +  K+ EA  +   M   G  P + TYT L++  C  G++  A  LF            
Sbjct: 273 GRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQ 332

Query: 186 -----------------------DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
                                    M   G+MPDV ++++L++  CK  + +EA      
Sbjct: 333 VIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFAT--- 389

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
                    F+ M+   ++P   T N  I GL + G + + ++L  T+E    +     +
Sbjct: 390 ---------FDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTY 440

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
            + I    K G    A E F K+  K +V ++VA N  +++L + G++++   +   + E
Sbjct: 441 ITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRE 500

Query: 343 NGCALDVDTFNTLM 356
           NG A D  T+N +M
Sbjct: 501 NGLAPDSVTYNMMM 514



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 151/357 (42%), Gaps = 45/357 (12%)

Query: 3    KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            + L A   F  F ++        ++N LI           A  L K M   GC P+  T 
Sbjct: 767  RELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTF 826

Query: 63   DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
            + L+    ++G +    +L++EM++         KP+   Y  +I  L K   +D+  D 
Sbjct: 827  NMLLAVHGKSGKITELFELYKEMISRRC------KPDAITYNIVISSLAKSNNLDKALDF 880

Query: 123  FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
            F ++                           +     P   TY PL++G   VG++  A+
Sbjct: 881  FYDL---------------------------VSSDFRPTPRTYGPLIDGLAKVGRLEEAM 913

Query: 183  ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
             LF+ M+  G  P+   +++LINGY K  + E A  +        FK++ NE     + P
Sbjct: 914  RLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL--------FKRMVNE----GIRP 961

Query: 243  ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
            +  +  I +D LC  G V E +  F  L+ +  +     +N +I G  K    E A  L+
Sbjct: 962  DLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALY 1021

Query: 303  NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            N++  + +V D+  YN L+  LG  G +++   +   ++  G   DV T+N L+  +
Sbjct: 1022 NEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGY 1078



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 170/415 (40%), Gaps = 62/415 (14%)

Query: 3    KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            +V  A+  F S I +   P N ++FN+L+  FC    +  A ++  KM    C+P+V T 
Sbjct: 592  RVQKAIELFESMIXKKCSP-NTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTY 650

Query: 63   DTLITGLRRTGNMN--------LTLKLHQEMVN------------GMGDFGGI------- 95
            +T+I GL +   +N        L   +H + V              +GD   I       
Sbjct: 651  NTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQ 710

Query: 96   --YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVE 145
              ++ N   +  L+ G   +  +D+      E+   GI            +LCK  + + 
Sbjct: 711  VRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELY 770

Query: 146  ANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
            A ++ +   ++ G++P + +Y  L+     V     A  LF  M   G  PD F++++L+
Sbjct: 771  AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 205  NGYCKNFNVEEAMNVSREMI-----------------------LNGFKKIFNEMKLCNVV 241
              + K+  + E   + +EMI                       L+     F ++   +  
Sbjct: 831  AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890

Query: 242  PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
            P   T    IDGL K G + E M LF  +    C+    IFN LI G  K G  E A +L
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 302  FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            F ++  + +  D+ +Y IL+  L   G++ +  Y    ++  G   D   +N ++
Sbjct: 951  FKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRII 1005



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 23/238 (9%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           K+ +   + E M ++ +   + TY  +     + G +     + + M + GF+ + +SY+
Sbjct: 137 KVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYN 196

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNEMKLC 238
            LI+   ++    EA+ V R M+  G K                        +  EM+  
Sbjct: 197 GLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDL 256

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
            + P  +T  I I  L + G + E  E+F  ++   C   +  +  LI   C  G  E A
Sbjct: 257 GLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENA 316

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            ELF K+       D V Y  L+      G +         ME +G   DV TF  L+
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILV 374


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 163/336 (48%), Gaps = 45/336 (13%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N +I   C EG++  A  L ++M   G  P++ T +TLI G  + G ++ ++ L +EM
Sbjct: 134 TYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEM 193

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
                 F G  +P+V  Y +LI+  CK + + +  + F EMKDK                
Sbjct: 194 -----KFMGC-EPDVITYNALINSFCKFKGMLRAFEFFREMKDKD--------------- 232

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
                       L P + +Y+ L++  C  G + +AI  F  M R G +P+ F+YS LI+
Sbjct: 233 ------------LKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLID 280

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
             CK  N+ EA  ++ EM+         E    N+V    T    +DGLC+ G + E  E
Sbjct: 281 ANCKAGNLGEAFMLADEML--------QEHVDLNIV----TYTTLLDGLCEEGMMNEAEE 328

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           LF  +  +     ++ + +LI G  K    + A ELFN++  K++  D++ +  ++  L 
Sbjct: 329 LFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLC 388

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            E ++++   ++  M+E+G   +   + TLM ++ +
Sbjct: 389 SESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFK 424



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 143/300 (47%), Gaps = 26/300 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN VT+ +L+ G C EG + +A +L + M   G  PN+     LI G  +  +M+  ++L
Sbjct: 305 LNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMEL 364

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC--- 138
             EM           KP++  +G+++ GLC +  +++ K +  EMK+ GI AN ++    
Sbjct: 365 FNEMRE------KDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTL 418

Query: 139 -----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
                K     EA  LLE M   G    + T+  L++G C  G V  AI  F  M     
Sbjct: 419 MDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDL 478

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V  Y+ LI+G CKN  + +A            KK+F+EM+  N++P+       IDG
Sbjct: 479 QPNVAVYTALIDGLCKNNCIGDA------------KKLFDEMQDKNMIPDKIAYTAMIDG 526

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
             K+G+  E + +   +     EL +  + SL+ G  + G  + A +   ++  K ++ D
Sbjct: 527 NLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPD 586



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 154/336 (45%), Gaps = 30/336 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ T++SLI   C  GN+ +A  L  +M       N+ T  TL+ GL   G MN      
Sbjct: 271 NEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEA---- 326

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +E+   MG  G    PN+  Y +LI G  K R +D+  +LF EM++K I  + L      
Sbjct: 327 EELFRAMGKAG--VTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIV 384

Query: 137 --LCKKTKLVEANRLLELMMQRGL--NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
             LC ++KL E   ++  M + G+  NPVI  YT L++ Y   G    AI L + M   G
Sbjct: 385 WGLCSESKLEECKIIMTEMKESGIGANPVI--YTTLMDAYFKAGNRTEAINLLEEMRDLG 442

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
               V ++  LI+G CK   V+EA+              F  M   ++ P        ID
Sbjct: 443 TEVTVVTFCALIDGLCKRGLVQEAI------------YYFGRMPDHDLQPNVAVYTALID 490

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
           GLCKN  + +  +LF  ++  N       + ++I G  K G F+ A  + NK+    +  
Sbjct: 491 GLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIEL 550

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
           D+ AY  L+  L + GQ+++    L  M   G   D
Sbjct: 551 DLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPD 586



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 12/182 (6%)

Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
            G+ +++   F  M   G  P VF+Y+++I   CK  ++  A            + +F +
Sbjct: 110 AGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTA------------RSLFEQ 157

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           MK   + P+  T N  IDG  K G + E + LF  ++   CE  V  +N+LI   CKF  
Sbjct: 158 MKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKG 217

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
              A E F ++  K+L  +V++Y+ LI AL KEG ++      + M   G   +  T+++
Sbjct: 218 MLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSS 277

Query: 355 LM 356
           L+
Sbjct: 278 LI 279


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 148/316 (46%), Gaps = 26/316 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N LI G C EG + +A + +  M ++GC+PNV T + ++  +  TG      KL  +
Sbjct: 118 VTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSD 177

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           M+           P+V  +  LI+ LC+  L+ +  D+  +M   G   N+L        
Sbjct: 178 MLRKGCS------PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHG 231

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK+ K+  A   L++M+ RG  P I TY  LL   C  GKV+VA+ + + ++ KG  P 
Sbjct: 232 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 291

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ +I+G  K    E A+            K+ +EM+   + P+  T +  + GL +
Sbjct: 292 LITYNTVIDGLSKVGKTERAI------------KLLDEMRRKGLKPDIITYSSLVSGLSR 339

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G V E ++ F  LE          +NS++ G CK    + A +    +  K        
Sbjct: 340 EGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEAT 399

Query: 317 YNILIHALGKEGQIKK 332
           Y ILI  +  EG  K+
Sbjct: 400 YTILIEGIAYEGLAKE 415



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 149/312 (47%), Gaps = 32/312 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +T N +++  C  G   DA +L+  M   GC P+V T + LI  L R G +   + + 
Sbjct: 151 NVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDIL 210

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
           ++M ++G         PN   Y  L+ G CK++ +D+  +    M  +G     +  NTL
Sbjct: 211 EKMPMHGC-------TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTL 263

Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           L   CK  K+  A  +L  +  +G +PV+ TY  +++G   VGK   AI L D M RKG 
Sbjct: 264 LTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL 323

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD+ +YS L++G  +   V+EA+            K F++++   + P   T N  + G
Sbjct: 324 KPDIITYSSLVSGLSREGKVDEAI------------KFFHDLEGLGIRPNAITYNSIMLG 371

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV-- 311
           LCK+      ++    +    C+     +  LI G    G+ + A +L N+L  + LV  
Sbjct: 372 LCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKK 431

Query: 312 --ADVVAYNILI 321
             A+ VA  +L+
Sbjct: 432 SSAEQVAAPVLL 443



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 129/269 (47%), Gaps = 20/269 (7%)

Query: 97  KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
           KP+V  Y  LI+G+CK+  +D+       M   G   N +        +C   + ++A +
Sbjct: 114 KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEK 173

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           LL  M+++G +P + T+  L+N  C  G +  AI + + M   G  P+  SY+ L++G+C
Sbjct: 174 LLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFC 233

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K   ++ A+     M+  G              P+  T N  +  LCK+G V   +E+  
Sbjct: 234 KEKKMDRAIEYLDIMVSRG------------CYPDIVTYNTLLTALCKDGKVDVAVEILN 281

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            L    C   +  +N++I G  K G  E A +L +++  K L  D++ Y+ L+  L +EG
Sbjct: 282 QLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREG 341

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMI 357
           ++ +       +E  G   +  T+N++M+
Sbjct: 342 KVDEAIKFFHDLEGLGIRPNAITYNSIML 370



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 153/339 (45%), Gaps = 28/339 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+  ++  C E  +  A +L+ +M   G +P+V T + LI G+ + G ++  +K     +
Sbjct: 85  FSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF----L 140

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL--------L 137
           N M  +G   +PNV  +  ++  +C   R +D  K L  +M  KG + + +        L
Sbjct: 141 NNMPSYGC--QPNVITHNIILRSMCSTGRWMDAEK-LLSDMLRKGCSPSVVTFNILINFL 197

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           C++  L  A  +LE M   G  P   +Y PLL+G+C   K++ AI   D M  +G  PD+
Sbjct: 198 CRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDI 257

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ L+   CK+  V+ A+            +I N++      P   T N  IDGL K 
Sbjct: 258 VTYNTLLTALCKDGKVDVAV------------EILNQLSSKGCSPVLITYNTVIDGLSKV 305

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G     ++L   +     +  +  ++SL+ G  + G  + A + F+ L    +  + + Y
Sbjct: 306 GKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITY 365

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N ++  L K  Q  +    L  M    C     T+  L+
Sbjct: 366 NSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILI 404



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 123/265 (46%), Gaps = 21/265 (7%)

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGL 158
           +   CK+  V Q   L  EM++KG   + +        +CK+ +L EA + L  M   G 
Sbjct: 89  VQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGC 148

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P + T+  +L   C  G+   A  L   M RKG  P V ++++LIN  C+   +  A++
Sbjct: 149 QPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAID 208

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
           +  +M ++G              P + + N  + G CK   +   +E    +    C   
Sbjct: 209 ILEKMPMHG------------CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 256

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+L+   CK G  ++A E+ N+LS K     ++ YN +I  L K G+ ++   LL 
Sbjct: 257 IVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLD 316

Query: 339 SMEENGCALDVDTFNTLMISFLQKE 363
            M   G   D+ T+++L +S L +E
Sbjct: 317 EMRRKGLKPDIITYSSL-VSGLSRE 340



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 12/164 (7%)

Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
           +S  +   CK   V +AM            K+ +EM+     P+  T N+ I+G+CK G 
Sbjct: 85  FSFYVQTTCKESGVGQAM------------KLLDEMRNKGSKPDVVTYNVLINGICKEGR 132

Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
           + E ++    +    C+  V   N ++R  C  G +  A +L + +  K     VV +NI
Sbjct: 133 LDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNI 192

Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           LI+ L ++G + +   +L  M  +GC  +  ++N L+  F +++
Sbjct: 193 LINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEK 236


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 154/373 (41%), Gaps = 38/373 (10%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
            +R     ++  T N+L+ G+C   ++R A  L+  M   GCR N  +   LI GL    
Sbjct: 204 LLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEAR 263

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
            +   L L   MV            N+  Y  LI GLCK+  +   + L  EM  +G+  
Sbjct: 264 CVREALVLVFMMVQDGCSL------NLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVP 317

Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
           +           CK  ++ +A  +  LM Q G NP  +TY  L+ G C  GK++ A  L 
Sbjct: 318 SVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAEELL 376

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI--------------------- 224
           +    +GF P V +++ LINGYCK   +++A+ V   MI                     
Sbjct: 377 NGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKK 436

Query: 225 --LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
             L   K+  NEM    + P        IDG CK G V   +E+F  +E   C      +
Sbjct: 437 CRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTY 496

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
            SLI G  +      A  L  K+    +   V+AY  LI    K+ +      L   ME+
Sbjct: 497 GSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEK 556

Query: 343 NGCALDVDTFNTL 355
           NG   D   +N L
Sbjct: 557 NGLTPDEQAYNVL 569



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 154/349 (44%), Gaps = 33/349 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V + S+I G+C  G +  A ++ K M   GC PN  T  +LI GL +        KLH
Sbjct: 457 NVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDK------KLH 510

Query: 83  QEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT----- 135
           + M  +  M + G    P V  Y +LI G CK    D    LF  M+  G+  +      
Sbjct: 511 KAMALITKMQEDG--ITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNV 568

Query: 136 ---LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LCK  +  EA   L   +++G+     TYT L++G+   G  + A  L + M  +G
Sbjct: 569 LTDALCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEG 625

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              D+++YSVL+   CK   + EA+++  +M ++G K        CN+V  T    I I 
Sbjct: 626 CKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVK--------CNIVAYT----IIIS 673

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            + K G       LF  +  S  +     +   I   CK G  E A  L  ++    +  
Sbjct: 674 EMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTP 733

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
           DVV Y+I I+  G  G + +    L  M +  C  +  T+  L+  FL+
Sbjct: 734 DVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLK 782



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 166/367 (45%), Gaps = 35/367 (9%)

Query: 15  IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
           I R + P   +TF +LI G+C    I DA ++   M +  C+ ++     LI  L +   
Sbjct: 380 IARGFTP-TVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIK--- 435

Query: 75  MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
               LK  +E +N M  F     PNV  Y S+IDG CK  +V    ++F  M+ +G + N
Sbjct: 436 -KCRLKEAKETLNEM--FANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPN 492

Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
                     L +  KL +A  L+  M + G+ P +  YT L+ G C   + + A  LF+
Sbjct: 493 AWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFE 552

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMN-----------VSREMILNGFKKIFNE- 234
            M + G  PD  +Y+VL +  CK+   EEA +           V+   +++GF K  N  
Sbjct: 553 MMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTD 612

Query: 235 ------MKLCN--VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
                  K+ N     + +T ++ +  LCK   + E + +   + +S  +  +  +  +I
Sbjct: 613 FAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIII 672

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
               K G  + A  LFN++           Y + I +  K GQI++  +L+  ME +G  
Sbjct: 673 SEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVT 732

Query: 347 LDVDTFN 353
            DV T++
Sbjct: 733 PDVVTYH 739



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 173/370 (46%), Gaps = 44/370 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N++I G+C  G ++DA  +   M   GC P+  T ++LI GL         L   +E+
Sbjct: 321 TYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGL-----CGGKLDEAEEL 375

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ---------TKDLFMEMKDKGINANTL 136
           +NG    G  + P V  + +LI+G CK   +D          + +  ++++  G+  N L
Sbjct: 376 LNGAIARG--FTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVL 433

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           + KK +L EA   L  M   GL P +  YT +++GYC VG V  A+ +F  M  +G  P+
Sbjct: 434 I-KKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPN 492

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFN 233
            ++Y  LI G  ++  + +AM +  +M  +G                         ++F 
Sbjct: 493 AWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFE 552

Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
            M+   + P+    N+  D LCK+G   E    +  L      L    + SL+ G  K G
Sbjct: 553 MMEKNGLTPDEQAYNVLTDALCKSGRAEEA---YSFLVRKGVVLTKVTYTSLVDGFSKAG 609

Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
             + A+ L  K+  +   AD+  Y++L+ AL K+ ++ +   +L  M  +G   ++  + 
Sbjct: 610 NTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAY- 668

Query: 354 TLMISFLQKE 363
           T++IS + KE
Sbjct: 669 TIIISEMIKE 678



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 155/337 (45%), Gaps = 46/337 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           + VT+N++I  +C +G++  A +    +   G + +  TC+ L+ G  RT ++     L 
Sbjct: 178 DTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLL 237

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             M+  MG      + N + Y  LI GL + R                       C +  
Sbjct: 238 M-MMPLMG-----CRRNEYSYTILIQGLYEAR-----------------------CVREA 268

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
           LV    L+ +M+Q G +  +  YT L+ G C  G+++ A  L D M  +G +P V++Y+ 
Sbjct: 269 LV----LVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNA 324

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
           +I+GYCK+  +++A+ +   M  NG          CN  P+ +T N  I GLC  G + E
Sbjct: 325 MIDGYCKSGRMKDALGIKALMEQNG----------CN--PDDWTYNSLIYGLC-GGKLDE 371

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
             EL            V  F +LI G CK    + A  + + +   N   D+ AY +LI+
Sbjct: 372 AEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLIN 431

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            L K+ ++K+    L  M  NG A +V  + +++  +
Sbjct: 432 VLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGY 468



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 166/397 (41%), Gaps = 55/397 (13%)

Query: 13  SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72
           SF+ R    L  VT+ SL+ GF   GN   A+ L++KM   GC+ ++ T   L+  L + 
Sbjct: 584 SFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQ 643

Query: 73  GNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
             +N  L +  +M V+G+       K N+  Y  +I  + K+   D  K LF EM   G 
Sbjct: 644 KKLNEALSILDQMTVSGV-------KCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGH 696

Query: 132 NAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
             +        +  CK  ++ EA  L+  M + G+ P + TY   +NG   +G ++ A +
Sbjct: 697 KPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFS 756

Query: 184 LFDSMARKGFMPDVFSYSVLINGYCK----NFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
               M      P+ ++Y +L+  + K    N +  +   +   + LN   ++   M    
Sbjct: 757 TLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKHG 816

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELF---------PTLEIS--------NCELF---- 278
           + P   T +  I G CK   + E   L          P  EI         + +LF    
Sbjct: 817 LNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKDV 876

Query: 279 --------------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                         +E ++ LI G C  G ++ A  LF  L   +   + VA+ IL   L
Sbjct: 877 SFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGL 936

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
            K G +   + LL +M+   C +D ++++ L  S  +
Sbjct: 937 LKAGHVDFCSQLLAAMDNRHCRIDSESYSMLTDSIRE 973



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 12/209 (5%)

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
           +L   ++Q GL P   TY  ++  YC  G + +A   F  +   G   D ++ + L+ GY
Sbjct: 165 KLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGY 224

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
           C+  ++ +A  +   M L G ++  NE          ++  I I GL +   V E + L 
Sbjct: 225 CRTSDLRKACWLLMMMPLMGCRR--NE----------YSYTILIQGLYEARCVREALVLV 272

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
             +    C L + ++  LI+G CK G    A  L +++  + +V  V  YN +I    K 
Sbjct: 273 FMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKS 332

Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLM 356
           G++K    +   ME+NGC  D  T+N+L+
Sbjct: 333 GRMKDALGIKALMEQNGCNPDDWTYNSLI 361



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 40/78 (51%)

Query: 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           +N  +R   +F + E   +L++ L  + L+ D V YN +I A  K+G +   +     + 
Sbjct: 147 YNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLR 206

Query: 342 ENGCALDVDTFNTLMISF 359
           E+G  +D  T N L++ +
Sbjct: 207 ESGMQMDTYTCNALLLGY 224


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 151/345 (43%), Gaps = 52/345 (15%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           TFN LI+GFC    + +  +  K+M+ F C P+V T +TL+ GL R G + +   + + M
Sbjct: 170 TFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGM 229

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
           V  M D      P+V  Y +L+ G C  + +D                           E
Sbjct: 230 VKKMKDLS----PDVVTYTTLVRGYCMKQEID---------------------------E 258

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN-VAIALFDSMARKGFMPDVFSYSVLI 204
           A  + E M+ RGL P   TY  L+ G C V K + +   L  ++  +GF+PD  +Y+ L+
Sbjct: 259 ALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLM 318

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
           N  C   N +EA+            K+F +MK   V P++ T ++ I  LC+ G      
Sbjct: 319 NAQCDAGNFDEAL------------KMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAE 366

Query: 265 ELFPTLEISN-------CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           +LF  L   +       C   V  +N +    CK G    A  +F +L  K    D  +Y
Sbjct: 367 QLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKG-TQDPPSY 425

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             LI    KEG  +    LLL M       D +T+  L+  FLQK
Sbjct: 426 KTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQK 470



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 171/347 (49%), Gaps = 34/347 (9%)

Query: 28  NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           N+L++ +   G   +A +L   M + G  P+V T ++L+  L + G  N+   +  EM  
Sbjct: 101 NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCG 160

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM-----KDKGINANTL---LCK 139
             G       P+ + +  LI G CK+ +VD+    F EM     +   +  NTL   LC+
Sbjct: 161 TYG-----VTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCR 215

Query: 140 KTKLVEANRLLELMMQ--RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
             K+  A+ +++ M++  + L+P + TYT L+ GYC+  +++ A+ +F+ M  +G  P+ 
Sbjct: 216 AGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPND 275

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LI G C+   V++   +    IL G       +     VP+T T N  ++  C  
Sbjct: 276 ITYNTLIKGLCE---VQKFDKIKE--ILGG------AVGGRGFVPDTCTYNTLMNAQCDA 324

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD---- 313
           G+  E +++F  ++    +     ++ LIR  C+ G FE A +LF+KLS ++++      
Sbjct: 325 GNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGC 384

Query: 314 ---VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
              V AYN +   L K G+  K   +   + + G   D  ++ TL+I
Sbjct: 385 TPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQ-DPPSYKTLII 430



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 36/262 (13%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ +L++G+CM+  I +A  + ++M + G +PN  T +TLI GL      +   ++   
Sbjct: 241 VTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGG 300

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
            V G G     + P+   Y +L++  C     D+   +F +MK+  +  ++         
Sbjct: 301 AVGGRG-----FVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRN 355

Query: 137 LCKKTKLVEANRLLE-------LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
           LC++     A +L +       L+   G  P++  Y P+ +  C  GK + A  +F  + 
Sbjct: 356 LCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLM 415

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249
           +KG   D  SY  LI G+CK    E            G+K +   ++  + VP+  T  +
Sbjct: 416 KKG-TQDPPSYKTLIIGHCKEGTFEA-----------GYKLLLFMLRR-DYVPDFETYVL 462

Query: 250 FIDGLCKNGHVLEVMELFPTLE 271
            I+G  + G   E +  + TLE
Sbjct: 463 LINGFLQKG---EPILAYKTLE 481



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 120/280 (42%), Gaps = 21/280 (7%)

Query: 93  GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLV 144
           G +   + FC  +L+       L ++   LF  MK  G++ + +        L K+ +  
Sbjct: 91  GSVKIEDRFC-NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTN 149

Query: 145 EANRLLELMM-QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            A+ + + M    G+ P  +T+  L+ G+C    V+     F  M+R    PDV +Y+ L
Sbjct: 150 MAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTL 209

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           ++G C+   V  A NV + M+           K+ ++ P+  T    + G C    + E 
Sbjct: 210 VDGLCRAGKVRIAHNVVKGMV----------KKMKDLSPDVVTYTTLVRGYCMKQEIDEA 259

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF-NKLSCKNLVADVVAYNILIH 322
           + +F  +     +     +N+LI+G C+   F+   E+    +  +  V D   YN L++
Sbjct: 260 LVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMN 319

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           A    G   +   +   M+E     D  T++ L+ +  Q+
Sbjct: 320 AQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQR 359



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 147/376 (39%), Gaps = 78/376 (20%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCM------------------------------ 36
           AL+ F   + R  +P ND+T+N+LIKG C                               
Sbjct: 259 ALVVFEEMVSRGLKP-NDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTL 317

Query: 37  ------EGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG-- 88
                  GN  +A ++ KKM     +P+  T   LI  L + G+     +L  ++ +   
Sbjct: 318 MNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDI 377

Query: 89  -MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI----NANTLL---CKK 140
            + D G    P V  Y  + D LCK+    + + +F ++  KG     +  TL+   CK+
Sbjct: 378 LLRDDGCT--PLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDPPSYKTLIIGHCKE 435

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
                  +LL  M++R   P   TY  L+NG+   G+  +A    + M +  ++P    +
Sbjct: 436 GTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVF 495

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFN--------------EMKLCNVVPETFT 246
             +++   KN    E+ +    MI    ++  N               +K   +V   + 
Sbjct: 496 HSILSELLKNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIKAFQIVELLYD 555

Query: 247 CNIFIDG------LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK-------FG 293
               +D       +C+NG +L+  ++          + + + N +I G CK       FG
Sbjct: 556 NGYMVDMEELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLCKMKRPLEAFG 615

Query: 294 IFEIASELFN--KLSC 307
           ++ +  E  N  +LSC
Sbjct: 616 LYYMLVEKSNHQQLSC 631


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 158/328 (48%), Gaps = 26/328 (7%)

Query: 40  IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99
           +  A  L K+M   G +P++ T +TLI  L + G +     +  ++      F     P+
Sbjct: 221 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI------FQYDLSPD 274

Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
           VF Y SLI G C++R +D    +F  M  +G + N++        LC + ++ EA  +LE
Sbjct: 275 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLE 334

Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
            M+++G+ P ++TYT  +   C +     AI L   M ++G  P+V +Y+ LI+G  +  
Sbjct: 335 EMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLG 394

Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
            +E A+ +  +M+  G            +VP T T N  I+ LC  G     +++F  +E
Sbjct: 395 KLEVAIGLYHKMLKEG------------LVPNTVTYNALINELCVGGRFSTALKIFHWME 442

Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
                   + +N +I+G C  G  E A  LF K+     +  VV YN LI+    +G + 
Sbjct: 443 GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVN 502

Query: 332 KENYLLLSMEENGCALDVDTFNTLMISF 359
               LL  M+ENGC  D  T+N L+  F
Sbjct: 503 NAARLLDLMKENGCEPDEWTYNELVSGF 530



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 167/367 (45%), Gaps = 52/367 (14%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+N+LI G+  +GN+ +A++L+  M   GC P+  T + L++G  + G +       QE
Sbjct: 486 VTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQE 545

Query: 85  MVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------- 136
           MV  G+        PN   Y +LIDG  KD  VD    L   M++ G N N         
Sbjct: 546 MVECGLN-------PNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVIN 598

Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
            L K+ +  EA ++ + M ++GL P + TYT L++G C  G+   A  +F  M ++  +P
Sbjct: 599 GLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLP 658

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           ++++YS LI G C+    +EA     E++L        EM+   + P+  T    IDG  
Sbjct: 659 NLYTYSSLIYGLCQEGKADEA-----EILL-------KEMERKGLAPDEVTFTSLIDGFV 706

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI--------------------- 294
             G +     L   +    C+     ++ L++G  K  +                     
Sbjct: 707 VLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEK 766

Query: 295 ---FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
              FEI S L  ++S       +  Y+ L+  L ++G+  +   L+  M+E G   D + 
Sbjct: 767 DVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREI 826

Query: 352 FNTLMIS 358
           + +L+I+
Sbjct: 827 YYSLLIA 833



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 170/385 (44%), Gaps = 61/385 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++ +LI G   +G +  A  L+++M   GC PNV + + +I GL +    +      
Sbjct: 554 NPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEA---- 609

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +++ + M + G +  PNV  Y +LIDGLC++        +F +M+ +    N        
Sbjct: 610 EKICDKMAEQGLL--PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLI 667

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ K  EA  LL+ M ++GL P   T+T L++G+ ++G+++ A  L   M   G  
Sbjct: 668 YGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCK 727

Query: 195 PDVFSYSVLINGYCKN-FNVEEAMNVSREMILN--------GFKKIFN---EMKLCNVVP 242
           P+  +YSVL+ G  K    +EE + V  E + +         F+ + N    M      P
Sbjct: 728 PNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEP 787

Query: 243 ETFTCNIFIDGLCKNGHVLEVMEL-----------------------------------F 267
              T +  + GLC+ G   E  +L                                   F
Sbjct: 788 TLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIF 847

Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
            ++E    +L + I+ +LI   CK G  E A  LF+ +  K   AD + + +L+  L KE
Sbjct: 848 HSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKE 907

Query: 328 GQIKKENYLLLSMEENGCALDVDTF 352
           G++     LL  ME      ++ T+
Sbjct: 908 GELDLCMKLLHIMESKNFTPNIQTY 932



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 141/279 (50%), Gaps = 25/279 (8%)

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTL---L 137
           ++GMG    +Y  N     +L+  L K  +V+  ++L+ +M + GI       NTL   L
Sbjct: 196 ISGMGFGFSLYSCN-----TLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINIL 250

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            KK K+ EA  +L  + Q  L+P +FTYT L+ G+C    +++A  +FD M ++G  P+ 
Sbjct: 251 SKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNS 310

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +YS LING C    V+EA+++  EMI  G +            P  +T  + I  LC  
Sbjct: 311 VTYSTLINGLCNEGRVDEALDMLEEMIEKGIE------------PTVYTYTLPITALCAI 358

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
            H  E +EL   ++   C   V+ + +LI G  + G  E+A  L++K+  + LV + V Y
Sbjct: 359 EHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTY 418

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           N LI+ L   G+      +   ME +G   +  T+N ++
Sbjct: 419 NALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEII 457



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 23/314 (7%)

Query: 16  RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
           R+C    N  T++SLI G C EG   +A  L+K+M   G  P+  T  +LI G    G +
Sbjct: 654 RKCLP--NLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRI 711

Query: 76  NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
           +    L + MV    D G   KPN   Y  L+ GL K+ L+ + K   + ++ + + + +
Sbjct: 712 DHAFLLLRRMV----DVGC--KPNYRTYSVLLKGLQKECLLLEEK---VAVQHEAVYSFS 762

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
              K       + LL  M + G  P + TY+ L++G C  G+   A  L   M  +GF P
Sbjct: 763 PHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCP 822

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D   Y  L+  +CKN  V+ A+ +   +   GF       +L   +     C      LC
Sbjct: 823 DREIYYSLLIAHCKNLEVDHALKIFHSIEAKGF-------QLHLSIYRALIC-----ALC 870

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G V E   LF  +          ++  L+ G  K G  ++  +L + +  KN   ++ 
Sbjct: 871 KAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQ 930

Query: 316 AYNILIHALGKEGQ 329
            Y IL   L + G+
Sbjct: 931 TYVILGRELSRIGK 944


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 158/318 (49%), Gaps = 26/318 (8%)

Query: 47  VKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSL 106
           +++M  FG  P+      +I G  R G M+  L++  EMV G G       P+V  Y +L
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMV-GCGCL-----PDVVTYNTL 57

Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL---CKKTKLVEANRLLELMMQRGL 158
           ++GLCK+R +   + L  EM+++G+  +     TL+   C + KL +A +L + M+ + L
Sbjct: 58  LNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRL 117

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
            P I TY  L++G C  G ++ A  L+D M  +   P+  +YS+LI+ +C+   VE+A  
Sbjct: 118 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 177

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
              EMI  G            ++P   T N  I G C++G+V +  +    + ++     
Sbjct: 178 FLDEMINKG------------ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 225

Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
           +  +N+LI G  K      A +L N +  + +  DVV YN+LI+     G +++  ++  
Sbjct: 226 LITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFE 285

Query: 339 SMEENGCALDVDTFNTLM 356
            M   G   D  T+ +++
Sbjct: 286 KMCAKGIEPDRYTYMSMI 303



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 161/344 (46%), Gaps = 33/344 (9%)

Query: 17  RCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL---RRT 72
           RC+  + D V +  +I GFC  G + DA ++  +M   GC P+V T +TL+ GL   RR 
Sbjct: 8   RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERR- 66

Query: 73  GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132
                 L   + ++N M + G    P++  + +LI G C +  +D+   LF  M ++ + 
Sbjct: 67  ------LLDAEGLLNEMRERG--VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLR 118

Query: 133 A-----NTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184
                 NTL   +C++  L +AN L + M  R + P   TY+ L++ +C  G+V  A   
Sbjct: 119 PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGF 178

Query: 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244
            D M  KG +P++ +Y+ +I GYC++ NV +     ++M++N             V P+ 
Sbjct: 179 LDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN------------KVSPDL 226

Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
            T N  I G  K   + +  +L   +E    +  V  +N LI G    G  + A  +F K
Sbjct: 227 ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK 286

Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
           +  K +  D   Y  +I+     G  K+   L   M + G A D
Sbjct: 287 MCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 330



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 15/235 (6%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
            K+  AL  F + + +  RP + VT+N+LI G C +G++  A+ L   M +    PN  T
Sbjct: 100 GKLDKALQLFDTMLNQRLRP-DIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVT 158

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
              LI      G +        EM+N      GI  PN+  Y S+I G C+   V + + 
Sbjct: 159 YSILIDSHCEKGQVEDAFGFLDEMINK-----GIL-PNIMTYNSIIKGYCRSGNVSKGQK 212

Query: 122 LFMEM-----KDKGINANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
              +M         I  NTL+    K+ K+ +A +LL +M +  + P + TY  L+NG+ 
Sbjct: 213 FLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFS 272

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           + G V  A  +F+ M  KG  PD ++Y  +ING+    N +EA  +  EM+  GF
Sbjct: 273 VHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGF 327



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 116/229 (50%), Gaps = 16/229 (6%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            C+   + +A R+ + M+  G  P + TY  LLNG C   ++  A  L + M  +G  PD
Sbjct: 26  FCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPD 85

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +++ LI+GYC    +++A+            ++F+ M    + P+  T N  IDG+C+
Sbjct: 86  LCTFTTLIHGYCIEGKLDKAL------------QLFDTMLNQRLRPDIVTYNTLIDGMCR 133

Query: 257 NGHVLEVMELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            G + +  +L+   ++ + E+F     ++ LI   C+ G  E A    +++  K ++ ++
Sbjct: 134 QGDLDKANDLWD--DMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNI 191

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + YN +I    + G + K    L  M  N  + D+ T+NTL+  +++++
Sbjct: 192 MTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKED 240



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 12/171 (7%)

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G +PD   Y+++I G+C+   + +A+ V  EM+             C  +P+  T N  +
Sbjct: 11  GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVG------------CGCLPDVVTYNTLL 58

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           +GLCK   +L+   L   +        +  F +LI G C  G  + A +LF+ +  + L 
Sbjct: 59  NGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLR 118

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            D+V YN LI  + ++G + K N L   M       +  T++ L+ S  +K
Sbjct: 119 PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 169


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 149/340 (43%), Gaps = 26/340 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +TFN++I   C +G +++A  ++  +  +   PN  T  +LI G  R  N++L   +   
Sbjct: 203 LTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDR 262

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
           MV    D      PN   Y +LI+GLC +  +++  D+  EM  KGI             
Sbjct: 263 MVKDGCD------PNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVS 316

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC      EA  LL  M +RG  P I T+T L++G    GK  +AI L+  M   G +P 
Sbjct: 317 LCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPT 376

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +Y+ LIN  C     E A  + + M+ +G             +P T T N  I   C 
Sbjct: 377 TVTYNALINQLCVEGRFETAFTIFKWMLSHG------------SLPSTQTYNEIIKCFCL 424

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G + + M +F  +  +     V  +N+LI G CK G    A  L   +    L  D   
Sbjct: 425 MGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWT 484

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           Y  LI    + G+++    L   M E+G + +  T+  ++
Sbjct: 485 YTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 145/303 (47%), Gaps = 25/303 (8%)

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
           +I   R  G +    +   E +N   DFG      +  + +L+  L K  +VD  +D+++
Sbjct: 137 MIKSCRNEGEVKRVTQFLSE-INSKYDFGY----TLCSFTTLLIQLGKFDMVDLARDMYI 191

Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
           +M + GI  + L        LCKK ++ EA  ++  + +    P  FTYT L+ G+C   
Sbjct: 192 KMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNH 251

Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
            +++A A+FD M + G  P+  +YS LING C    +EEAM++  EM+  G         
Sbjct: 252 NLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG--------- 302

Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
              + P  +T  I +  LC  G   E +EL   ++   C   ++ F +LI G  + G FE
Sbjct: 303 ---IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359

Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           IA  L++K+    LV   V YN LI+ L  EG+ +    +   M  +G      T+N ++
Sbjct: 360 IAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419

Query: 357 ISF 359
             F
Sbjct: 420 KCF 422



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 170/379 (44%), Gaps = 40/379 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A++ F   ++    P N +T+N+LI G+C +GN+ +A +L++ M   G +P+  T   LI
Sbjct: 431 AMVIFDKMLKAGSSP-NVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELI 489

Query: 67  TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
           +G  R G +     L      GM + G    PN   Y ++IDG      VD    LF +M
Sbjct: 490 SGFSRGGKLEHATSL----FYGMMEHG--ISPNHVTYTAIIDGYFNLAKVDDALALFWKM 543

Query: 127 KDKG--INANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            + G   ++ T         K   + EA      M+++GL P + TYT  ++G C  G+ 
Sbjct: 544 VESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRT 603

Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA---------------MNV-SRE 222
            +A  +F  M ++ + P++++YS LI G C+    E+A                NV +  
Sbjct: 604 GLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYT 663

Query: 223 MILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
            ++ G           ++   M+   + P        + G CKN  V   + +F +++  
Sbjct: 664 TLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTL 723

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
             +L +  + +LI   CK    E A  +F  +  K+  +D V + +L+  L KEG+    
Sbjct: 724 GFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLC 783

Query: 334 NYLLLSMEENGCALDVDTF 352
             LL  ME   C L+  T+
Sbjct: 784 LKLLHVMESRNCTLNFQTY 802



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 151/326 (46%), Gaps = 28/326 (8%)

Query: 43  ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGD-FGGIYKPNVF 101
           A  +  KM   G RP++ T +T+I  L + G +       QE    M   F     PN F
Sbjct: 186 ARDMYIKMLNSGIRPSLLTFNTMINILCKKGRV-------QEAKLIMSHIFRYDAYPNAF 238

Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
            Y SLI G C++  +D    +F  M   G + N++        LC + +L EA  +LE M
Sbjct: 239 TYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEM 298

Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
           +Q+G+ P ++TYT  L   C  G  + A+ L   M ++G +P++ +++ LI+G  ++   
Sbjct: 299 VQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKF 358

Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
           E A+ +  +M+ +G            +VP T T N  I+ LC  G       +F  +   
Sbjct: 359 EIAIGLYHKMLADG------------LVPTTVTYNALINQLCVEGRFETAFTIFKWMLSH 406

Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
                 + +N +I+  C  G  + A  +F+K+       +V+ YN LI+   K+G +   
Sbjct: 407 GSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNA 466

Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
             LL  M+ NG   D  T+  L+  F
Sbjct: 467 MRLLEIMKGNGLKPDAWTYTELISGF 492



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 170/402 (42%), Gaps = 74/402 (18%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+++LI G C EG + +A  ++++M   G  P V T    +  L   G  +  +   
Sbjct: 271 NSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAV--- 327

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            E++  M   G +  PN+  + +LI GL +D   +    L+ +M   G+   T+      
Sbjct: 328 -ELLGKMKKRGCV--PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALI 384

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC + +   A  + + M+  G  P   TY  ++  +CL+G +  A+ +FD M + G  
Sbjct: 385 NQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS 444

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
           P+V +Y+ LI GYCK  N+  AM +   M  NG K                        +
Sbjct: 445 PNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSL 504

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF-----------------------P 268
           F  M    + P   T    IDG      V + + LF                        
Sbjct: 505 FYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK 564

Query: 269 TLEISNCELF------------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
           T  IS  E F            V  + S I G C+ G   +A ++F+++  +N   ++  
Sbjct: 565 TNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYT 624

Query: 317 YNILIHALGKEGQIK-KENY-LLLSMEENGCALDVDTFNTLM 356
           Y+ LI+ L +EG+ +  E Y LL  +   GC  +VDT+ TL+
Sbjct: 625 YSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLV 666



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 137/314 (43%), Gaps = 33/314 (10%)

Query: 2   SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           +KV  AL  F   +     P +  T+N +I GF    +I +A     KM   G  PNV T
Sbjct: 531 AKVDDALALFWKMVESGNLP-SSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVIT 589

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK- 120
             + I GL R G   L  K+  EM          Y PN++ Y SLI GLC++   +  + 
Sbjct: 590 YTSFIDGLCRNGRTGLAFKIFHEMEKRN------YFPNLYTYSSLIYGLCQEGRAEDAEM 643

Query: 121 -DLFMEMKDKGINAN-----TL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
            +L   +   G   N     TL   LC + +  EA++L+  M ++GL P    Y  LL G
Sbjct: 644 YNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIG 703

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
            C   KV  A+ +F SM   GF   +  Y  LI   CK   +EEA  + + M+    +K 
Sbjct: 704 ECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTML----EKH 759

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC-- 289
           +N         +     + +DGL K G     ++L   +E  NC L  + +  L R    
Sbjct: 760 WNS--------DEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSA 811

Query: 290 --CKFGIFEIASEL 301
             C   I +I+ +L
Sbjct: 812 LDCAIKIPQISQQL 825


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 155/335 (46%), Gaps = 45/335 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+  F  EG IR A  +   +  +G RP+V + +TL+ G  + G+++
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L     N M   G   +P+V+ Y  LI+GLCK+                       
Sbjct: 189 EGFRLK----NAMQASG--VQPDVYTYSVLINGLCKE----------------------- 219

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
               +K+ +AN L + M+  GL P   T+T L++G+C  G+V +A+ ++  M  +   PD
Sbjct: 220 ----SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPD 275

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CK  ++++A ++  EM + G K            P+  T    IDG CK
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK------------PDKITYTTLIDGSCK 323

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +   +E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  
Sbjct: 324 EGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           Y ++I+   K+G +   + LL  M+ +G    V T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 154/345 (44%), Gaps = 28/345 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L    ++E +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 87  N-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
             G       Y  +++ +  L+    K+  +   + +F  +   G+       NTL+   
Sbjct: 129 ECG-------YPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K   L E  RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M   G +P+ 
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNG 241

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +++ LI+G+CKN  V  AM + ++M+              ++ P+  T N  I GLCK 
Sbjct: 242 VTFTTLIDGHCKNGRVVLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKK 289

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D VAY
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAY 349

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             LI  L +EG+      +L  M   G   ++ T+  ++  F +K
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 110/218 (50%), Gaps = 13/218 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + + + GL P + ++  L+NGY  +G ++    L ++M   G  PDV++YSVLIN
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G CK   +++A  +  EM+ NG            +VP   T    IDG CKNG V+  ME
Sbjct: 215 GLCKESKMDDANELFDEMLDNG------------LVPNGVTFTTLIDGHCKNGRVVLAME 262

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           ++  +   +    +  +N+LI G CK G  + A +L +++S K L  D + Y  LI    
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSC 322

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           KEG ++        M +    LD D   T +IS L +E
Sbjct: 323 KEGDLETALEYRKRMIKENIRLD-DVAYTALISGLCQE 359


>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
 gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
          Length = 798

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 157/357 (43%), Gaps = 41/357 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+N L+ G C  G   DA +L  +M   G  PNV T   L++ +   G     LK  
Sbjct: 208 NRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSMCNAGQ----LKEA 263

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG---INANTLLCK 139
           + ++N M D G    P+   Y + + GLCK   VD+  +    ++  G   +      C 
Sbjct: 264 ENLLNSMEDKGC--PPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFVLGLKGYSCL 321

Query: 140 KTKLVEANRL-------LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
              L  A R        +E++ Q   +P I  YT ++ G    G+++ A A FD M  K 
Sbjct: 322 IDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKR 381

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F PD F Y+ L+   C + +            L+G + + +EM   NVV +T T  I I 
Sbjct: 382 FTPDTFCYNTLLKALCDSGD------------LDGARSLMSEMAQNNVVLDTNTHTIMIH 429

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC----- 307
           GLCK   V E M++F  +    C   V  +N LI G  +    E A  LF K+       
Sbjct: 430 GLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNNPS 489

Query: 308 --------KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
                    N V D  +   L+ ++ + GQ+ K   LL  + ++G   DV T+NTL+
Sbjct: 490 LFLRLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTLL 546



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 166/393 (42%), Gaps = 41/393 (10%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           AL  F   ++R   P N  T   L+   C  G +++A  L+  M   GC P+  T +  +
Sbjct: 228 ALKLFDEMLQRGITP-NVKTHTILLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFL 286

Query: 67  TGL----------------RRTGNMNLTLKLHQEMVNGMGDFG---------------GI 95
           +GL                RRTG   L LK +  +++G+   G                 
Sbjct: 287 SGLCKAGRVDEAIERLEALRRTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQAD 346

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEAN 147
           + P++  Y  +I G  +   +D     F EMK+K    +T         LC    L  A 
Sbjct: 347 FSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGAR 406

Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
            L+  M Q  +     T+T +++G C    V+ A+ +FD M   G  P V +Y+VLI+G 
Sbjct: 407 SLMSEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGL 466

Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKL-CNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
            +   +EEA  +  +M +     +F  + L  N V ++ +    +D +C++G VL+  +L
Sbjct: 467 YRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKL 526

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +  S     V  +N+L+ G CK    + A  LF +L  K    D + Y  LI +L +
Sbjct: 527 LRGIMDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFSLDEITYGTLIDSLLR 586

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             +      L   +   G    +  +N++M S 
Sbjct: 587 AHRYNDAMTLFQDILHIGGTPSLSIYNSIMRSL 619



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 149/353 (42%), Gaps = 43/353 (12%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKM-ATFGCRPNVTTCDTLITGLRRTGNM-NLTLKLH 82
             F +LI      G   +A     +M   FGCRP     + ++  L  +G +  L L L+
Sbjct: 138 AAFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVPLALALY 197

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
             MV      G +  PN   Y  L+DGLCK         LF EM  +GI  N        
Sbjct: 198 NRMVAA----GCL--PNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILL 251

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-F 193
           + +C   +L EA  LL  M  +G  P   TY   L+G C  G+V+ AI   +++ R G F
Sbjct: 252 SSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTF 311

Query: 194 MPDVFSYSVLING------YCKNFN----VEEAMNVSREMIL---------------NGF 228
           +  +  YS LI+G      Y + F     V E  + S +++L               + F
Sbjct: 312 VLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAF 371

Query: 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
              F+EMK     P+TF  N  +  LC +G +     L   +  +N  L       +I G
Sbjct: 372 A-FFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHG 430

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
            CK  + + A ++F+ +        V+ YN+LI  L +  ++++   L   ME
Sbjct: 431 LCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKME 483



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 119/256 (46%), Gaps = 32/256 (12%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           +N+L+K  C  G++  A  L+ +MA      +  T   +I GL +   ++  +    ++ 
Sbjct: 389 YNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAM----QVF 444

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK---------DKGINANTL- 136
           +GM + G    P V  Y  LIDGL +   +++ + LF +M+            + AN + 
Sbjct: 445 DGMVEVGC--HPTVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVK 502

Query: 137 -----------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
                      +C+  ++++A +LL  +M  G+ P + TY  LLNG C V  ++ A+ LF
Sbjct: 503 DSESLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLCKVRNLDGALRLF 562

Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---KIFNEM--KLCNV 240
             +  KGF  D  +Y  LI+   +     +AM + ++++  G      I+N +   LC +
Sbjct: 563 RELQVKGFSLDEITYGTLIDSLLRAHRYNDAMTLFQDILHIGGTPSLSIYNSIMRSLCRM 622

Query: 241 VPETFTCNIFIDGLCK 256
              +   N + D L K
Sbjct: 623 NKLSQAINFWFDHLLK 638


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG-NMNLTL 79
           PL+   + SLI         ++A    ++M   G +P++ T + +I    + G +    L
Sbjct: 114 PLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENIL 173

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INAN 134
           +L +EM        GI +P+ + Y + I       L ++  +LF +MK        +  N
Sbjct: 174 ELFEEM-----KAQGI-QPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYN 227

Query: 135 TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
            LL    K     EA  +L+ M   G  P I TY  LL+ +   G  N A  + DSM  K
Sbjct: 228 ALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSK 287

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PDVF+Y+ L++ Y +   VE+AM            +I+N+M+  N  P +FT N  I
Sbjct: 288 GIEPDVFTYTSLLSAYSRAGKVEQAM------------EIYNQMRTSNCTPNSFTFNALI 335

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
               KN +  E+M +F  ++    E  +  +NSL+    K G++    ++F  +      
Sbjct: 336 GMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFE 395

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            D   +NILI A G+ G   +   +   M + GC  D+ TFNTL+ +  ++
Sbjct: 396 PDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALARE 446



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 155/363 (42%), Gaps = 70/363 (19%)

Query: 23  NDVTFNSLIKGFCMEGNI-RDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++ T+N+ I   C  G++  +A++L  +M +  C P+  T + L+    + G  N    +
Sbjct: 187 DEYTYNTAITA-CASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANV 245

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
            +EM +     G +  PN+  Y  L+    +  L +       EMKD             
Sbjct: 246 LKEMESA----GCL--PNIVTYNELLSAFGRAGLCNAAA----EMKDS------------ 283

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
                      M+ +G+ P +FTYT LL+ Y   GKV  A+ +++ M      P+ F+++
Sbjct: 284 -----------MVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFN 332

Query: 202 VLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFNEMKLC 238
            LI  + KN N  E M +  +M              +L  F K         +F  MK  
Sbjct: 333 ALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKA 392

Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P+  T NI I+   + G   + + ++  +  + C   +  FN+L+    + G +E A
Sbjct: 393 GFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHA 452

Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
             + ++L+  +   + +AY  ++HA    G+++K    L  M        VDT +T+ + 
Sbjct: 453 ELILDELNRSSYKPNDIAYASMLHAYANGGELEK----LKEM--------VDTLHTIYVP 500

Query: 359 FLQ 361
           F +
Sbjct: 501 FTK 503



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 143/365 (39%), Gaps = 41/365 (11%)

Query: 29  SLIKGFCMEGNIRDASQLVKKM-ATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
           S++KG   EG    A ++   M  +   RP+  T   ++  L R   +    +L + +  
Sbjct: 51  SIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLRE 110

Query: 88  GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCK 139
                   Y  +V+ Y SLI  L ++R   +    F +MK+ G   +         L  K
Sbjct: 111 EG------YPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGK 164

Query: 140 KTKLVE-ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV-NVAIALFDSMARKGFMPDV 197
           K +  E    L E M  +G+ P  +TY   +   C  G +   A  LF  M      PD 
Sbjct: 165 KGRSWENILELFEEMKAQGIQPDEYTYNTAITA-CASGSLCEEATELFTQMKSSNCTPDR 223

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM----------ILNGFKKIFNEMKLCNVV------ 241
            +Y+ L++ Y K     EA NV +EM            N     F    LCN        
Sbjct: 224 VTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDS 283

Query: 242 -------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
                  P+ FT    +    + G V + ME++  +  SNC      FN+LI    K   
Sbjct: 284 MVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKN 343

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           F     +F  +    +  D+V +N L+ A GK G   +   +   M++ G   D  TFN 
Sbjct: 344 FSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNI 403

Query: 355 LMISF 359
           L+ ++
Sbjct: 404 LIEAY 408



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 137/366 (37%), Gaps = 74/366 (20%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           L  F    +  + P +  TFN LI+ +   G+   A  +   M   GC P++ T +TL+ 
Sbjct: 383 LKVFRGMKKAGFEP-DKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLA 441

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFG-GIYKPNVFCYGSLIDGLC--------------- 111
            L R G        H E++  + +     YKPN   Y S++                   
Sbjct: 442 ALAREGRWE-----HAELI--LDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTL 494

Query: 112 --------------------KDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKL 143
                               K  LVD+ +D F+ M+  G  ++T        +  KK  +
Sbjct: 495 HTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMM 554

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
            +A     L+   GL P + TY  L+  Y   G      A        G  PD+ SY+ +
Sbjct: 555 DKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTV 614

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           I  Y K+  +  A  +  EM+ NG +            P++FT N F+      G   E 
Sbjct: 615 IFSYSKHGQLSSATRIFHEMVSNGIQ------------PDSFTYNTFVGCYVNGGMFPEA 662

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL----------FNKLSCKNLVAD 313
           + +   +  + C+     + +L+   CK G FE    +          F+K + + + A 
Sbjct: 663 LSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEVERILKFIKSSDPNFSKAAYRRIAAR 722

Query: 314 VVAYNI 319
           V  Y++
Sbjct: 723 VDDYDL 728



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 144/362 (39%), Gaps = 37/362 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+ SL+  +   G +  A ++  +M T  C PN  T + LI    +  N +  + + ++M
Sbjct: 295 TYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDM 354

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKK 140
                   G+ +P++  + SL+    K+ +  +   +F  MK  G        N L+   
Sbjct: 355 -----QACGV-EPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAY 408

Query: 141 TKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            +   +++ L +   M+Q G  P + T+  LL      G+   A  + D + R  + P+ 
Sbjct: 409 GRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPND 468

Query: 198 FSYSVLINGYCKNFNVEE--AMNVSREMILNGFKKI---------------------FNE 234
            +Y+ +++ Y     +E+   M  +   I   F KI                     F  
Sbjct: 469 IAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLA 528

Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
           M+    + +T T N  I    K G + +  + F  L  +  E  V  +N L+    + G+
Sbjct: 529 MRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGM 588

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
           +        +        D+V+YN +I +  K GQ+     +   M  NG   D  T+NT
Sbjct: 589 YRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNT 648

Query: 355 LM 356
            +
Sbjct: 649 FV 650


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 166/374 (44%), Gaps = 40/374 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P     FN L++     G +  A  +  +M   G +P V T +TL++G+ +  ++N    
Sbjct: 111 PPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLN---- 166

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--- 137
            +   + G+    GI  P+V+ YG+ I GLCK   +    ++F EM ++G+N NT++   
Sbjct: 167 -NANALRGLMAKAGI-APDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTT 224

Query: 138 -----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                CK+  +     L   M  RG+   +  Y  L+NG+C V  +  A  + + M + G
Sbjct: 225 LIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDG 284

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK-------- 230
             PD  +Y+ LI+G CK   ++ AM + +EM              +++G  K        
Sbjct: 285 LKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAE 344

Query: 231 -IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            I  EM    + P+  T  + ID  CKNG V    +    ++       +  +N ++ G 
Sbjct: 345 RILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGF 404

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C  G  + A  L N +    +  + + YNIL+    K G+++    L       G   D 
Sbjct: 405 CSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEEL---KSAKGMVSDF 461

Query: 350 DTFNTLMISFLQKE 363
             + +L+  F++K+
Sbjct: 462 GVYTSLINEFVKKK 475



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 12/204 (5%)

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           ++  G+ P    +  L+      GK+  A  +FD M R+G  P V +++ L++G CK  +
Sbjct: 105 LLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASD 164

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
                       LN    +   M    + P+ +T   FI GLCK G + + ME+F  +  
Sbjct: 165 ------------LNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCE 212

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
                   +  +LI   CK G      EL  +++ + + AD+VAYN L++   +   +K 
Sbjct: 213 RGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKA 272

Query: 333 ENYLLLSMEENGCALDVDTFNTLM 356
            N ++  M ++G   D  T+ TL+
Sbjct: 273 ANDIVEEMRKDGLKPDKVTYTTLI 296


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 166/370 (44%), Gaps = 30/370 (8%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  A       I+R + P ++ T   ++   C  G +  A    +KM   G +PN+   
Sbjct: 232 KIQEADRWLTGMIQRGFIP-DNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINF 290

Query: 63  DTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
            +LI GL + G++    ++ +EMV NG       +KPNV+ + +LIDGLCK    ++   
Sbjct: 291 TSLIDGLCKKGSIKQAFEMLEEMVRNG-------WKPNVYTHTALIDGLCKRGWTEKAFR 343

Query: 122 LFMEMKDKGI---NANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
           LF+++        N +T        CK+ KL  A  L   M ++GL P + TYT L+NG+
Sbjct: 344 LFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGH 403

Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
           C  G    A  L + M  +GFMP++++Y+  I+  CK     EA             ++ 
Sbjct: 404 CKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAY------------ELL 451

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           N+   C +  +  T  I I   CK   + + +  F  +  +  E  + + N LI   C+ 
Sbjct: 452 NKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQ 511

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              + +  LF  +    L+     Y  +I    KEG I        +M+ +GC  D  T+
Sbjct: 512 KKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTY 571

Query: 353 NTLMISFLQK 362
            +L+    +K
Sbjct: 572 GSLISGLCKK 581



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 147/354 (41%), Gaps = 65/354 (18%)

Query: 19  YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
           Y+P N  T+ S+I G+C E  +  A  L  +M   G  PNV T  TLI G  + G+    
Sbjct: 354 YKP-NVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRA 412

Query: 79  LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL---------------- 122
                E++N MGD G  + PN++ Y + ID LCK     +  +L                
Sbjct: 413 Y----ELMNLMGDEG--FMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTY 466

Query: 123 -------------------FMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQ 155
                              F  M   G  A+  L        C++ K+ E+ RL +L++ 
Sbjct: 467 TILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVS 526

Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
            GL P   TYT +++ YC  G +++A+  F +M R G +PD F+Y  LI+G CK   V+E
Sbjct: 527 LGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDE 586

Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
           A  +   MI  G              P   T        CK       M L   LE  + 
Sbjct: 587 ACKLYEAMIDRGLS------------PPEVTRVTLAYEYCKRNDSANAMIL---LEPLDK 631

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
           +L++    +L+R  C      +A+  F KL  K+  AD V       A  + G+
Sbjct: 632 KLWIRTVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSESGK 685



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 147/342 (42%), Gaps = 46/342 (13%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           +  ++  ++ G   +G I++A + +  M   G  P+  TC  ++T L   G +N  +   
Sbjct: 216 DSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYF 275

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
           ++M+    D G  +KPN+  + SLIDGLCK                           K  
Sbjct: 276 RKMI----DLG--FKPNLINFTSLIDGLCK---------------------------KGS 302

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-FMPDVFSYS 201
           + +A  +LE M++ G  P ++T+T L++G C  G    A  LF  + R   + P+V +Y+
Sbjct: 303 IKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYT 362

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            +I GYCK            E  LN  + +F+ MK   + P   T    I+G CK G   
Sbjct: 363 SMIGGYCK------------EDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFG 410

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
              EL   +        +  +N+ I   CK      A EL NK     L AD V Y ILI
Sbjct: 411 RAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILI 470

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
               K+  I +       M + G   D+   N L+ +F +++
Sbjct: 471 QEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQK 512



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 123/257 (47%), Gaps = 21/257 (8%)

Query: 115 LVDQTKDLFMEMKDKGINANTLLCK--------KTKLVEANRLLELMMQRGLNPVIFTYT 166
           L++  +++F EM  +G+  ++   K          K+ EA+R L  M+QRG  P   T T
Sbjct: 197 LIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCT 256

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            +L   C  G VN AI  F  M   GF P++ +++ LI+G CK  ++++A  +  EM+ N
Sbjct: 257 LILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRN 316

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC-ELFVEIFNSL 285
           G+K            P  +T    IDGLCK G   +   LF  L  S+  +  V  + S+
Sbjct: 317 GWK------------PNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSM 364

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
           I G CK      A  LF+++  + L  +V  Y  LI+   K G   +   L+  M + G 
Sbjct: 365 IGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGF 424

Query: 346 ALDVDTFNTLMISFLQK 362
             ++ T+N  + S  +K
Sbjct: 425 MPNIYTYNAAIDSLCKK 441



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 24/239 (10%)

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
           +L EA  ++  M  +GL P   T   +L     +G +  A  +FD M+ +G +PD  SY 
Sbjct: 162 RLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYK 221

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGF---------------------KKIFNEMKLCNV 240
           +++ G  ++  ++EA      MI  GF                     + I+   K+ ++
Sbjct: 222 LMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDL 281

Query: 241 --VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
              P        IDGLCK G + +  E+   +  +  +  V    +LI G CK G  E A
Sbjct: 282 GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKA 341

Query: 299 SELFNKL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
             LF KL        +V  Y  +I    KE ++ +   L   M+E G   +V+T+ TL+
Sbjct: 342 FRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLI 400


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 174/372 (46%), Gaps = 43/372 (11%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG---LRRTGNMNLTLKLH 82
           TFN +I G C  G +R A  + K M  +G  P+V T +TLI G     R G M     L 
Sbjct: 190 TFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLL 249

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           +EM     +  GI  PNV  +  LI+G CK+  +     +F EM+  GI AN +      
Sbjct: 250 KEM-----NQAGI-SPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLV 303

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC++ K+ ++ +L+E M + GL   + T   +LNG+C  G +  A    D MA+KG  
Sbjct: 304 SGLCREGKVEDSMKLVEEMEELGLA-TLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMK 362

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKI 231
           P+V +Y+ LI+GY +   ++EA      M              ++ GF           +
Sbjct: 363 PNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGL 422

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            +EMK   V  +  T N+ I  LC  G V + ++L   +     E     +N++I G C+
Sbjct: 423 LDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCE 482

Query: 292 FGIFEIASELFNKLS-CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
            G  + A ++  ++  CK   A+VV  N+ +    K G++ + N +L  M E G   +  
Sbjct: 483 KGDAKGAHDIRIRMEKCKKR-ANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRI 541

Query: 351 TFNTLMISFLQK 362
           T+  +    ++K
Sbjct: 542 TYEIINSGMIEK 553



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 125/302 (41%), Gaps = 63/302 (20%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTFN LI G+C E NI  A ++ ++M   G   N+ T  +L++GL R G +  ++KL 
Sbjct: 260 NVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLV 319

Query: 83  QEM------------------------------VNGMGDFGGIYKPNVFCYGSLIDGLCK 112
           +EM                              V+GM   G   KPNV  Y +LIDG  +
Sbjct: 320 EEMEELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKG--MKPNVVTYNTLIDGYQR 377

Query: 113 DRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFT 164
              + +       M  KGI+ +        T     T     + LL+ M + G+   + T
Sbjct: 378 LGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVT 437

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM- 223
           Y  L+   C  G+V  A+ L D M   G  P   +Y+ +ING+C+  + + A ++   M 
Sbjct: 438 YNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRME 497

Query: 224 ---------ILNGFKKIF-------------NEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
                      N F K F             NEM    +VP   T  I   G+ + G+V 
Sbjct: 498 KCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGMIEKGYVP 557

Query: 262 EV 263
           ++
Sbjct: 558 DI 559



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 27/228 (11%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           ++P  FT+  +++G C  G++  A  +   M   G MP V +Y+ LI+GY K     +  
Sbjct: 184 VSPDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMY 243

Query: 218 NVS---REM--------------ILNGF---------KKIFNEMKLCNVVPETFTCNIFI 251
           +V    +EM              ++NG+          K+F EM+   +     T    +
Sbjct: 244 HVDMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLV 303

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
            GLC+ G V + M+L   +E           NS++ G CK G+   A    + ++ K + 
Sbjct: 304 SGLCREGKVEDSMKLVEEMEELGLATL-PTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMK 362

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +VV YN LI    + G++K+      +M   G + DV T+N L+  F
Sbjct: 363 PNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGF 410



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 55/246 (22%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T NS++ GFC +G + +A   V  MA  G +PNV T +TLI G +R G M       +E 
Sbjct: 332 TLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKM-------KEA 384

Query: 86  VNGMGDFGGI-YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
               G   G    P+V  Y  LI G            L  EMK+ G+ A+ +        
Sbjct: 385 TAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGA 444

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC----------------------- 173
           LC K ++ +A +LL+ M++ GL P   TY  ++NG+C                       
Sbjct: 445 LCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKRAN 504

Query: 174 ------------LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE----AM 217
                        +GK++ A  + + M  KG +P+  +Y ++ +G  +   V +    A 
Sbjct: 505 VVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGMIEKGYVPDIRGYAA 564

Query: 218 NVSREM 223
           +VS+ +
Sbjct: 565 DVSKNL 570



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 16/206 (7%)

Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
           P  F+   LL       +V++A   F +  R+   PD F+++++I+G CK   + +A +V
Sbjct: 151 PSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAGDV 210

Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK---NGHVLEVMELFPTLEISNCE 276
           ++            +M+   ++P   T N  IDG  K    G +  V  L   +  +   
Sbjct: 211 AK------------DMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGIS 258

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             V  FN LI G CK      A ++F ++    + A++V Y  L+  L +EG+++    L
Sbjct: 259 PNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKL 318

Query: 337 LLSMEENGCALDVDTFNTLMISFLQK 362
           +  MEE G A  + T N+++  F +K
Sbjct: 319 VEEMEELGLA-TLPTLNSVLNGFCKK 343


>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
 gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
          Length = 607

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 161/366 (43%), Gaps = 57/366 (15%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL--- 79
           N VT+N L    C  G+I  A Q+V++M   G  PNV T +T++ GL R G +   L   
Sbjct: 239 NTVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGAALDFF 298

Query: 80  ------------------------------KLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109
                                          L  E+ + M D G  Y P+   Y ++I G
Sbjct: 299 REKRTTWLEARGNAVTYSTLVSAFLHCNNVALAMELFHEMADQG--YPPDAVMYFTMISG 356

Query: 110 LCK-DRLVDQTKDLFMEMKDKGIN-----ANTLL---CKKTKLVEANRLLELMMQRGLNP 160
           L +  RLVD   ++   MK  G        N L+   C+K +L EA++L E M   GL P
Sbjct: 357 LTQAGRLVDAC-NIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQP 415

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            ++TY  LL+  C  G  +    L  +M   G  P V ++  L++GYCK    +EA+   
Sbjct: 416 DVYTYNTLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEAL--- 472

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                    KIF  M    + P T   N  ID LCK+  V   ++LF  +  +N    V 
Sbjct: 473 ---------KIFRSMGEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVT 523

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            +N+L++G     + E A EL +++  +    D V  ++L+  L + G+ ++    +   
Sbjct: 524 TYNALLKGLQDKNMPEKAFELMDQMKEERCTPDYVTMDVLMEWLPEIGETERLKCFMEQR 583

Query: 341 EENGCA 346
           +E G A
Sbjct: 584 DEKGGA 589



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 150/350 (42%), Gaps = 30/350 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLV--KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           V  N+++ G C  G ++DA   V  +     GC PN  T + L     R G++++  ++ 
Sbjct: 204 VILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPNTVTYNCLADACCRVGDIDMACQIV 263

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
           + M     +  G+  PNV    +++ GLC+   V    D F E +   + A       + 
Sbjct: 264 ERM-----EKEGV-TPNVITMNTIVGGLCRVGRVGAALDFFREKRTTWLEARGNAVTYST 317

Query: 143 LVEA----------NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           LV A            L   M  +G  P    Y  +++G    G++  A  +  SM + G
Sbjct: 318 LVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMKKAG 377

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F  D  +Y++LI G+C+   + EA             ++F EMK   + P+ +T N  + 
Sbjct: 378 FKLDRKAYNILIGGFCRKKRLHEA------------HQLFEEMKGAGLQPDVYTYNTLLS 425

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LCK G    V EL   +    C+  V  F +L+ G CK G  + A ++F  +    +  
Sbjct: 426 CLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQP 485

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           + V YN LI  L K  ++     L   M EN    +V T+N L+     K
Sbjct: 486 NTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGLQDK 535



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 14/191 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+   +N LI GFC +  + +A QL ++M   G +P+V T +TL++ L + G+ +     
Sbjct: 380 LDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDFSAV--- 436

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             E++  M D G   +P+V  +G+L+ G CK    D+   +F  M +  I  NT+     
Sbjct: 437 -DELLGNMIDDG--CQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTL 493

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++  A +L + M +  +   + TY  LL G         A  L D M  +  
Sbjct: 494 IDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAFELMDQMKEERC 553

Query: 194 MPDVFSYSVLI 204
            PD  +  VL+
Sbjct: 554 TPDYVTMDVLM 564



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 102/240 (42%), Gaps = 29/240 (12%)

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLN-PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
           + LL + +   +A   L   +  G   P + T+  LL+     G +     LF SM    
Sbjct: 102 SKLLARFSSPADAASFLRDSLAAGAPAPDVSTFNSLLSALGRAGNLRGMTELFTSMREAS 161

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PD+ +Y +L+N  CK   V +A+ V   M   G           +V  +    N  +D
Sbjct: 162 VKPDIVTYGILLNRLCKAGLVGDALKVLDRMSSPG----------SDVCADIVILNTVVD 211

Query: 253 GLCKNGHVLEVMELFPT--LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
           GLCK G + + +        ++  C      +N L   CC+ G  ++A ++  ++  + +
Sbjct: 212 GLCKIGRLQDAIVFVDERMRQVHGCAPNTVTYNCLADACCRVGDIDMACQIVERMEKEGV 271

Query: 311 VADVVAYNILIHALGKEGQI---------KKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
             +V+  N ++  L + G++         K+  +L    E  G A+   T++TL+ +FL 
Sbjct: 272 TPNVITMNTIVGGLCRVGRVGAALDFFREKRTTWL----EARGNAV---TYSTLVSAFLH 324


>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic [Vitis vinifera]
 gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
          Length = 567

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 154/345 (44%), Gaps = 27/345 (7%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+NSL++G CM GN+  + Q++ K    G  PNV T   L+    +    +  ++
Sbjct: 164 PTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIR 223

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L  E+V   G      KPN+  Y  L+ GLCK+   ++    F ++  KG + N +    
Sbjct: 224 LLDEIVAKGG------KPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNI 277

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC + +  +A  LL  M     +P I T+  L+    L G+ + A+ + D M+R  
Sbjct: 278 LLRSLCYEGRWEKAKELLAEMDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRAR 337

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
           F     SY+ +I   CK   V+  +    +M+           + CN  P   T N  I 
Sbjct: 338 FKATAASYNPIIARLCKEGKVDLVVKCLDQMMY----------RRCN--PNEGTYNA-IA 384

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
            LC+ G V E   +  +L         + +  +I   C+ G    A +L  +++    V 
Sbjct: 385 VLCEEGKVQEAFSIIQSLGNKQNSSTHDFYKGVISSLCRKGNTYPAFQLLYEMTKYGFVP 444

Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
           D   Y+ LI  L  EG + +   +   MEEN C  DVD FN L++
Sbjct: 445 DSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALIL 489



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 140/329 (42%), Gaps = 45/329 (13%)

Query: 29  SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
            L+   C    +R A+++++ M   G  P+  +C  L+  L + GN+   ++L    V  
Sbjct: 102 QLMYELCKSNKMRKATKVMELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQL----VEK 157

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANR 148
           M ++G  Y  N   Y SL+ GLC                   ++ N        L ++ +
Sbjct: 158 MEEYG--YPTNTVTYNSLVRGLC-------------------MHGN--------LSQSLQ 188

Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
           +L+  M++GL P +FTY+ LL         + AI L D +  KG  P++ SY+VL+ G C
Sbjct: 189 ILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVSYNVLLTGLC 248

Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           K    EEAM   R++   GF             P   + NI +  LC  G   +  EL  
Sbjct: 249 KEGRTEEAMQFFRDLPSKGFS------------PNVVSYNILLRSLCYEGRWEKAKELLA 296

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            ++       +  FN LI      G  + A E+ + +S     A   +YN +I  L KEG
Sbjct: 297 EMDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCKEG 356

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMI 357
           ++      L  M    C  +  T+N + +
Sbjct: 357 KVDLVVKCLDQMMYRRCNPNEGTYNAIAV 385



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 137/317 (43%), Gaps = 27/317 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V++N L+ G C EG   +A Q  + + + G  PNV + + L+  L   G      +L 
Sbjct: 236 NLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELL 295

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            EM       GG   P++  +  LI  L      DQ  ++  +M      A         
Sbjct: 296 AEMD------GGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPII 349

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LCK+ K+    + L+ MM R  NP   TY  +    C  GKV  A ++  S+  K   
Sbjct: 350 ARLCKEGKVDLVVKCLDQMMYRRCNPNEGTYNAIAV-LCEEGKVQEAFSIIQSLGNKQNS 408

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
                Y  +I+  C+  N   A  +  EM   GF            VP+++T +  I GL
Sbjct: 409 STHDFYKGVISSLCRKGNTYPAFQLLYEMTKYGF------------VPDSYTYSSLIRGL 456

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C  G + E ME+F  +E + C   V+ FN+LI G CK    +++  +F  +  K  + + 
Sbjct: 457 CSEGMLDEAMEIFSIMEENYCRPDVDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMPNE 516

Query: 315 VAYNILIHALGKEGQIK 331
             Y I++  +  + +++
Sbjct: 517 TTYTIIVEGIAHQEEME 533



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 110/273 (40%), Gaps = 23/273 (8%)

Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
           L   ++    KD    + +     N    +  +L +A   LE M+ +G  P     T L+
Sbjct: 45  LASTQITISPKDNVFTLPNWRSGKNDPRTRDLRLNDAFLYLEYMIGKGHKPDGGQATQLM 104

Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
              C   K+  A  + + M   G  PD  S + L+N  CK  NV  AM +  +M   G+ 
Sbjct: 105 YELCKSNKMRKATKVMELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYGYP 164

Query: 230 -----------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
                                  +I ++     +VP  FT +  ++   K     E + L
Sbjct: 165 TNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRL 224

Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
              +     +  +  +N L+ G CK G  E A + F  L  K    +VV+YNIL+ +L  
Sbjct: 225 LDEIVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCY 284

Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           EG+ +K   LL  M+    +  + TFN L+ S 
Sbjct: 285 EGRWEKAKELLAEMDGGERSPSIVTFNILIGSL 317


>gi|449488446|ref|XP_004158042.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11710, mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 176/370 (47%), Gaps = 40/370 (10%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ-- 83
           TFN +I   C E  + +A  +V  M      PNV T + +I    + G M+L LKL +  
Sbjct: 216 TFNLIIYALCNECKLLEAIYVVYLMLKIEIWPNVVTFNMIIDKANKMGEMDLALKLTRNT 275

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL- 137
           E+++     GG   PN+  Y  +I+G CK R ++  K++  EM   GI  N     TL+ 
Sbjct: 276 EVIS-----GGSVSPNIVAYNCIINGFCKIRRLESAKNVLGEMIKLGIYFNERTYATLID 330

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
              +K  L  A RL + M++  L P  F Y  L+    + G++  A  L   M  +  +P
Sbjct: 331 GYARKGSLDVAFRLCDEMVEMRLIPDTFVYNSLIYWLYMEGELEEASFLLSDMINRRILP 390

Query: 196 DVFSYSVLINGYCKNFNVEEAMN-----VSREMILNGF------------------KKIF 232
           D F+YS+L  G C + ++ +A+      V R ++ + F                  K++ 
Sbjct: 391 DEFTYSILTKGLCVSGHLNKALRVHYYIVERSLVRDAFTYNILINYMFQSRNIAGAKQLL 450

Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           + M +  + P+  T    +DG CK G +   ++++     ++ +  + ++NS++ G CK 
Sbjct: 451 SSMIVGGIKPDMVTYGTPVDGHCKEGKIEAAVQIYDKTVKADGKSNLVVYNSILDGLCKQ 510

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
           G    A  L +KL  +N   D V YN L+H     G+I+K   L L M   G  +++ ++
Sbjct: 511 GSIYAAKLLVDKLQ-QNGFLDPVTYNTLLHGFCVNGEIEKAFALFLEMINVGSLVNIVSY 569

Query: 353 NTLMISFLQK 362
           N +MI FL K
Sbjct: 570 N-IMIHFLCK 578



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 101/209 (48%), Gaps = 13/209 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T+N LI       NI  A QL+  M   G +P++ T  T + G  + G +   ++++ + 
Sbjct: 429 TYNILINYMFQSRNIAGAKQLLSSMIVGGIKPDMVTYGTPVDGHCKEGKIEAAVQIYDKT 488

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----INANTLL---C 138
           V   G      K N+  Y S++DGLCK   +   K L  +++  G    +  NTLL   C
Sbjct: 489 VKADG------KSNLVVYNSILDGLCKQGSIYAAKLLVDKLQQNGFLDPVTYNTLLHGFC 542

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
              ++ +A  L   M+  G    I +Y  +++  C +G +  A+ L  +M+ +G +PD+ 
Sbjct: 543 VNGEIEKAFALFLEMINVGSLVNIVSYNIMIHFLCKMGLIQQAMELMRAMSSQGIIPDLI 602

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +Y+ LI  + +    ++ + +   M+L G
Sbjct: 603 TYTTLITNFVEICGSKDVIELHDYMVLKG 631



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 24/217 (11%)

Query: 1   TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
           +  + GA     S I    +P + VT+ + + G C EG I  A Q+  K      + N+ 
Sbjct: 440 SRNIAGAKQLLSSMIVGGIKP-DMVTYGTPVDGHCKEGKIEAAVQIYDKTVKADGKSNLV 498

Query: 61  TCDTLITGLRRTGNMN----LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116
             ++++ GL + G++     L  KL Q   NG  D           Y +L+ G C +  +
Sbjct: 499 VYNSILDGLCKQGSIYAAKLLVDKLQQ---NGFLD--------PVTYNTLLHGFCVNGEI 547

Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
           ++   LF+EM + G   N +        LCK   + +A  L+  M  +G+ P + TYT L
Sbjct: 548 EKAFALFLEMINVGSLVNIVSYNIMIHFLCKMGLIQQAMELMRAMSSQGIIPDLITYTTL 607

Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           +  +  +      I L D M  KG +PD  +Y   ++
Sbjct: 608 ITNFVEICGSKDVIELHDYMVLKGAVPDRKTYRSFVS 644


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 155/339 (45%), Gaps = 45/339 (13%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K    +  F   I  C  P +   FN L+  FC EG+I  A  +   +  +G RP+V + 
Sbjct: 104 KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSF 163

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
           +TL+ G  R G+M+   +L     N M   G   +P+V+ Y  LI+GLCK+         
Sbjct: 164 NTLMNGYIRLGDMDEGFRLK----NAMHASG--VQPDVYTYSVLINGLCKE--------- 208

Query: 123 FMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
                             +K+ +AN + + M+ +GL P   T+T L++G+C  G+V++A+
Sbjct: 209 ------------------SKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAM 250

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
            ++  M  +   PD+ +Y+ LI G CK  ++++A ++  EM + G K            P
Sbjct: 251 EIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK------------P 298

Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
           +  T    IDG CK G +    E    +      L    + +LI G C+   +  A ++ 
Sbjct: 299 DKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVL 358

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
            ++    L  D   Y ++I+   K+G +   + LL  M+
Sbjct: 359 REMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 397



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 154/344 (44%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +            TC  ++  L +     L    ++E++
Sbjct: 58  FSGLITAYLESGFLRDAXECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 117

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLCKKT 141
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 118 ECG------YPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYI 171

Query: 142 KL---VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           +L    E  RL   M   G+ P ++TY+ L+NG C   K++ A  +FD M  KG +P+  
Sbjct: 172 RLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGV 231

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G
Sbjct: 232 TFTTLIDGHCKNGRVDLAMEIYKQMLSQ------------SLXPDLITYNTLIYGLCKKG 279

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI GCCK G  E A E   ++  + +  D VAY 
Sbjct: 280 DLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYT 339

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +E +      +L  M   G   D  T+  ++  F +K
Sbjct: 340 ALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKK 383


>gi|242061542|ref|XP_002452060.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
 gi|241931891|gb|EES05036.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
          Length = 674

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 156/360 (43%), Gaps = 59/360 (16%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+VTF + I+ FC  G +  A +L+++M  +GC P+V    TL+ G    G ++  LKL 
Sbjct: 253 NEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKLL 312

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
             M         + +PN  CY + + GLC     D+  +L  E                 
Sbjct: 313 STM---------LCRPNTVCYNAALKGLCIAGRWDEVGELIAE----------------- 346

Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                     M+++   P   T++ L+N  C       AI + + M + G+MPDV SY+ 
Sbjct: 347 ----------MVRKDCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSYNT 396

Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF----------------- 245
           +I+ + +    ++A+ +   M+       FN +  C    E +                 
Sbjct: 397 IISCFSEQACADDALKLLNSMLCKPDTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHT 456

Query: 246 ---TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
              T NI ID LC+NG V + +E+F  +    C   +  ++SLI G  + G+ ++A +LF
Sbjct: 457 NEMTFNILIDSLCQNGQVKDAIEMFELMPKYRCTPDIVTYSSLINGFSEQGLDKVAFDLF 516

Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             + C+   AD+ +YN  +  L    +      L+  M    C  +  TFN L+ S  QK
Sbjct: 517 RSMPCR---ADIFSYNATLKGLCMAARWDDAGELIADMVTKDCLPNEVTFNILINSLCQK 573



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 156/348 (44%), Gaps = 31/348 (8%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P   +T N LIK  C    + DA ++++ + T G    V+  +TL+ G  R G++     
Sbjct: 116 PPAVITCNILIKKLCARRRLADAERVLEALKTSGAADAVSH-NTLVAGYCRDGSL----- 169

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLF-MEMKDKGINANTLL- 137
              E V       G    NV  Y +LIDG C+  RL D  + +  M +       NT+L 
Sbjct: 170 WDAERVLEAARASG--AANVVTYTALIDGYCRSGRLTDALRLIASMPVAPDTYTYNTVLK 227

Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
             C   +  EA  L+  M++   +P   T+   +  +C  G ++ A+ L + M + G MP
Sbjct: 228 GLCFAKQWEEAEELMREMIRNNCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCMP 287

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           DV  YS L+NG+ ++  V++A+            K+ + M LC   P T   N  + GLC
Sbjct: 288 DVVIYSTLVNGFSEHGRVDDAL------------KLLSTM-LCR--PNTVCYNAALKGLC 332

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
             G   EV EL   +   +C      F++LI   C+  + E A E+  ++     + DVV
Sbjct: 333 IAGRWDEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVV 392

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +YN +I    ++        LL SM    C  D  +FN ++    + E
Sbjct: 393 SYNTIISCFSEQACADDALKLLNSML---CKPDTISFNAVLKCLCRAE 437



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 152/349 (43%), Gaps = 30/349 (8%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP N V +N+ +KG C+ G   +  +L+ +M    C PN  T  TLI  L +    N   
Sbjct: 318 RP-NTVCYNAALKGLCIAGRWDEVGELIAEMVRKDCPPNDATFSTLINSLCQ----NRLA 372

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM--KDKGINANTLL 137
           +   E++  M  +G  Y P+V  Y ++I    +    D    L   M  K   I+ N +L
Sbjct: 373 EYAIEVLEQMQKYG--YMPDVVSYNTIISCFSEQACADDALKLLNSMLCKPDTISFNAVL 430

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+  +  +A  L+  M++   +    T+  L++  C  G+V  AI +F+ M +    
Sbjct: 431 KCLCRAERWYDAAELMAKMLKEDCHTNEMTFNILIDSLCQNGQVKDAIEMFELMPKYRCT 490

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD+ +YS LING+ +    + A ++ R M                   + F+ N  + GL
Sbjct: 491 PDIVTYSSLINGFSEQGLDKVAFDLFRSMPCRA---------------DIFSYNATLKGL 535

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           C      +  EL   +   +C      FN LI   C+ G+   A E++ ++    +  D+
Sbjct: 536 CMAARWDDAGELIADMVTKDCLPNEVTFNILINSLCQKGLVNRAIEVYEQMPKYGITPDI 595

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             YN LI+   ++G +      L +M    C  D  ++N+++    + E
Sbjct: 596 FTYNALINGYSEQGCLDDALKFLSTMP---CEPDTISYNSILKGLCRAE 641



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 154/343 (44%), Gaps = 41/343 (11%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P ND TF++LI   C       A +++++M  +G  P+V + +T+I+        +  LK
Sbjct: 353 PPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSYNTIISCFSEQACADDALK 412

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           L   M         + KP+   + +++  LC+        +L  +M  +  + N +    
Sbjct: 413 LLNSM---------LCKPDTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHTNEMTFNI 463

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC+  ++ +A  + ELM +    P I TY+ L+NG+   G   VA  LF SM  + 
Sbjct: 464 LIDSLCQNGQVKDAIEMFELMPKYRCTPDIVTYSSLINGFSEQGLDKVAFDLFRSMPCRA 523

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
              D+FSY+  + G C     ++A  +  +M+              + +P   T NI I+
Sbjct: 524 ---DIFSYNATLKGLCMAARWDDAGELIADMVTK------------DCLPNEVTFNILIN 568

Query: 253 GLCKNGHV---LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
            LC+ G V   +EV E  P   I+  ++F   +N+LI G  + G  + A +  + + C+ 
Sbjct: 569 SLCQKGLVNRAIEVYEQMPKYGITP-DIFT--YNALINGYSEQGCLDDALKFLSTMPCE- 624

Query: 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
              D ++YN ++  L +  + K    L+  M    C  +  TF
Sbjct: 625 --PDTISYNSILKGLCRAERWKDAEKLVTEMLRKNCTPNEVTF 665


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 156/329 (47%), Gaps = 47/329 (14%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+  F  EG IR A  +   +  +  RP+V + +TL+ G  + G+++
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 77  LTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
              +L   M V+G+       +P+V+ Y  LI+GLCK+                      
Sbjct: 189 EGFRLKNAMQVSGV-------QPDVYTYSVLINGLCKE---------------------- 219

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
                +K+ +AN L + M+ +GL P   T+T L++G+C  G+V++A+ ++  M  +   P
Sbjct: 220 -----SKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
           D+ +Y+ LI G CK  ++++A ++  EMI+ G            + P+  T    IDG C
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG------------LXPDKITYTTLIDGNC 322

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G +    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++ 
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIG 382

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENG 344
            Y ++I+   K+G +   + LL  M+ +G
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 155/341 (45%), Gaps = 20/341 (5%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L    ++E +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTLL---CKKT 141
              G    +Y  N+  +  + +G  + RL     D      ++   ++ NTL+    K  
Sbjct: 129 E-CGYPASLYFFNILMHSFVKEG--EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLG 185

Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
            L E  RL   M   G+ P ++TY+ L+NG C   K++ A  LFD M  KG +P+  +++
Sbjct: 186 DLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFT 245

Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
            LI+G+CKN  V+ AM + ++M+              ++ P+  T N  I GLCK G + 
Sbjct: 246 TLIDGHCKNGRVDLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKKGDLK 293

Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
           +  +L   + +         + +LI G CK G  E A E   ++  +N+  D VAY  LI
Sbjct: 294 QAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALI 353

Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             L +EG+      +L  M   G   ++ T+  ++  F +K
Sbjct: 354 SGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKK 394



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 106/218 (48%), Gaps = 13/218 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + + +  L P + ++  L+NGY  +G ++    L ++M   G  PDV++YSVLIN
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLIN 214

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G CK   +++A              +F+EM    +VP   T    IDG CKNG V   ME
Sbjct: 215 GLCKESKMDDA------------NXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           ++  +   +    +  +N+LI G CK G  + A +L +++  K L  D + Y  LI    
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNC 322

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           KEG ++        M +    LD D   T +IS L +E
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLD-DVAYTALISGLCQE 359



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T++ LI G C E  + DA+ L  +M   G  PN  T  TLI G  + G ++L ++++++M
Sbjct: 208 TYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
           ++          P++  Y +LI GLCK   + Q +DL  EM  KG     I   TL+   
Sbjct: 268 LSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGN 321

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+  L  A    + M++  +      YT L++G C  G+   A  +   M   G  P++
Sbjct: 322 CKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEI 381

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
            +Y+++IN +CK  +V     + +EM  +G+
Sbjct: 382 GTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 16/186 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ K+M +    P++ T +TLI GL + G++     L 
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 83  QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM+  G+        P+   Y +LIDG CK+  ++   +    M  + I  + +     
Sbjct: 300 DEMIMKGL-------XPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTAL 352

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ + V+A ++L  M+  GL P I TYT ++N +C  G V     L   M R G+
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412

Query: 194 MPDVFS 199
           MP V +
Sbjct: 413 MPSVVT 418



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 16/231 (6%)

Query: 137 LCKKTKLVEANRLLELMMQR---GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           LC +  L EA  L+++++ R   G    +F       G      + V   L  +    GF
Sbjct: 23  LCTQQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKG-TQRSDIYVFSGLITAYLESGF 81

Query: 194 MPDVFSYSVLINGY--------CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
           + D      L   +        C+   +E  M +    ++ GF   + E   C      +
Sbjct: 82  LRDAIECYRLTKEHKFRVPFDTCRKV-LEHLMKLKYFKLVWGF---YEESLECGYPASLY 137

Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
             NI +    K G +     +F  +   +    V  FN+L+ G  K G  +    L N +
Sbjct: 138 FFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAM 197

Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
               +  DV  Y++LI+ L KE ++   N L   M + G   +  TF TL+
Sbjct: 198 QVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLI 248


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 158/348 (45%), Gaps = 27/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N  T+  LI+ +   G I +A ++ +KM   G   ++    ++I+   + GNM     L 
Sbjct: 284 NAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALF 343

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL----- 137
            E+ N  G        N   YG+LI G C    +D  + L  EM+ +G++ N ++     
Sbjct: 344 DEL-NERGLVA-----NAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLI 397

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              CKK  + EA R+ ++M ++G    IFTY  +  G C + +   A     +M  KG  
Sbjct: 398 NGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVD 457

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           P+  S++++I+ +CK  N+ EA            +++F +MK     P   T N  IDG 
Sbjct: 458 PNAVSFTIMIDIHCKEGNLVEA------------ERVFQDMKKKGEKPNVVTYNTLIDGY 505

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            K G + E   L   +E       +  + +L+ G C FG  E A  L N++  K L   +
Sbjct: 506 SKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISI 565

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
           V Y  +I  L KEG+ ++   L   M   G   D D   T +++ L K
Sbjct: 566 VTYTAIISGLSKEGRSEEAFRLYDEMMAAGLTPD-DRVYTSLVANLHK 612



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 154/356 (43%), Gaps = 61/356 (17%)

Query: 50  MATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109
           M   G + +  +C   +  L+R+  M ++L   ++MV    D        V+    +IDG
Sbjct: 171 MVHNGLKIDDRSCIVCLLALKRSDQMVMSLGFFKKMVEFKVDV------TVYSMTIVIDG 224

Query: 110 LCKDRLVDQTKDLFMEMKDKGINAN----------------------------------- 134
           LCK   V++ KDL +EM  KGI  N                                   
Sbjct: 225 LCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYN 284

Query: 135 ----TLLCK----KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
               TLL +      K+ EA ++ E M++RG+   I  +T +++  C +G +  A ALFD
Sbjct: 285 AATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFD 344

Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246
            +  +G + +  +Y  LI+G C +  ++ A     EM++N  +    +M L         
Sbjct: 345 ELNERGLVANAHTYGALIHGTCNSGQLDAA-----EMLVNEMQSQGLDMNLV-------I 392

Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
            N  I+G CK G + E + +   +E    E  +  +N++  G CK    E A      + 
Sbjct: 393 FNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMV 452

Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            K +  + V++ I+I    KEG + +   +   M++ G   +V T+NTL+  + +K
Sbjct: 453 EKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKK 508



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 20/218 (9%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V FN+LI G+C +G I +A ++   M   G   ++ T +T+  GL +       L  
Sbjct: 388 MNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCK-------LNR 440

Query: 82  HQEMVNGMGDFGGIYK---PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INA 133
           H+E    +  F  + K   PN   +  +ID  CK+  + + + +F +MK KG     +  
Sbjct: 441 HEEAKRWL--FTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTY 498

Query: 134 NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
           NTL+    KK KL EA RL + M   G+   I+TYT L++G C+ GKV  A+ L + + R
Sbjct: 499 NTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCR 558

Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
           KG    + +Y+ +I+G  K    EEA  +  EM+  G 
Sbjct: 559 KGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAGL 596


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 160/354 (45%), Gaps = 46/354 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           ND  F  LIK +   G    A +    M  F C P+V T + ++  L +   + L L ++
Sbjct: 126 NDAFF-VLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVY 184

Query: 83  QEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
             M  +N +        PNV  +  LIDGLCK   V     LF EM  +GI  +      
Sbjct: 185 TRMMKLNCL--------PNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCV 236

Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
               LC+  ++ +A RL + M   G+ P   T   LLNG+C++ +V+ A +L     + G
Sbjct: 237 VISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDG 296

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK----------------------- 229
           ++ DV  YS LI G  +    E+   + R+MI +  K                       
Sbjct: 297 YVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDAL 356

Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF--VEIFNSLIR 287
           ++ NEM    VVP+T   N+ I G C  G + E   L   LEIS  + F  V+ ++ LI 
Sbjct: 357 ELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSL--QLEISRHDCFPNVKTYSILIS 414

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341
           G C+ G+   A E+FN++         V +N LI  L K GQ++K + L   ME
Sbjct: 415 GMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKME 468



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 183/465 (39%), Gaps = 123/465 (26%)

Query: 7   ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
           A+  FGS   R +    DV T+N ++     +  +  A  +  +M    C PNV T   L
Sbjct: 145 AMETFGSM--RDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSIL 202

Query: 66  ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
           I GL ++GN+   L L  EM        GI  P+ F Y  +I GLC+ + VD    LF +
Sbjct: 203 IDGLCKSGNVKDALHLFDEMTQR-----GIL-PDAFTYCVVISGLCRSKRVDDAYRLFDK 256

Query: 126 MKDKGINA-----NTLL---CKKTKLVEANRLLEL------------------------- 152
           MKD G+       N LL   C   ++ EA  LL L                         
Sbjct: 257 MKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKR 316

Query: 153 ----------MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
                     M++  + P ++ YT ++ G    GKV  A+ L + M   G +PD   Y+V
Sbjct: 317 YEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNV 376

Query: 203 LINGYCKNFNVEEA----MNVSRE---------------MILNGF----KKIFNEMKLCN 239
           LI G+C    + EA    + +SR                M  NG     ++IFNEM+   
Sbjct: 377 LIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLG 436

Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-NCELFVEI----------------- 281
             P   T N  IDGLCK G + +   LF  +EI  N  LF+ +                 
Sbjct: 437 CYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMV 496

Query: 282 ------------------------------FNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
                                         +N L+ G CK G F  A +LF ++  K L 
Sbjct: 497 EQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLS 556

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            D V Y  LI+ L +  + +    +   ME+NGC  D   + T+M
Sbjct: 557 PDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMM 601



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 121/253 (47%), Gaps = 20/253 (7%)

Query: 115 LVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYT 166
           L D+  + F  M+D     +         +L +K  L+ A  +   MM+    P + T++
Sbjct: 141 LTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFS 200

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            L++G C  G V  A+ LFD M ++G +PD F+Y V+I+G C++  V++A          
Sbjct: 201 ILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAY--------- 251

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
              ++F++MK   V P+  TCN  ++G C    V E   L    E     L V  ++ LI
Sbjct: 252 ---RLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLI 308

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
           RG  +   +E    L+ K+   N+  DV  Y I++  L + G+++    LL  M E+G  
Sbjct: 309 RGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVV 368

Query: 347 LDVDTFNTLMISF 359
            D   +N L+  F
Sbjct: 369 PDTVCYNVLIKGF 381



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 20/229 (8%)

Query: 14  FIRRCYRP---LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F+R    P   L+  +   +++  C  G I  A +++ ++A  G  P + T + L+ G  
Sbjct: 476 FLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFC 535

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + GN N   KL +EM      F G+  P+   YG+LI+GL + +  +    +F +M+  G
Sbjct: 536 KLGNFNGAYKLFREM-----QFKGL-SPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNG 589

Query: 131 INAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
              +        T +C++ +L  A  L  L   R +          + GY    +V  A+
Sbjct: 590 CTPDAAVYRTMMTWMCRRMELPRAFSLW-LKYLRNIRSQEDEAIKAIEGYFEKQEVEKAV 648

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
                M  K    D+  Y++ + G C+   V EA+ +   +IL  +K +
Sbjct: 649 RGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIF--LILEEYKVV 695


>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
 gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
          Length = 438

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 151/330 (45%), Gaps = 25/330 (7%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ I++ +R +  +TF  L+KG C +    DA  +V ++M    C P+V +C  L+ G
Sbjct: 117 ALGNVIKKGFR-VEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKG 175

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L   M +   D GG   P+V  Y ++I+G  K+   D+    + EM D
Sbjct: 176 LCDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLD 232

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           + I+ N +        LCK   + +A  +L  M++ G+ P   TY  +L+GYC  G+   
Sbjct: 233 RRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE 292

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           AI     M   G  P+V +Y  L+N  CKN    EA            +KIF+ M    +
Sbjct: 293 AIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEA------------RKIFDSMTKRGL 340

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            P+  T    + G    G ++E+  L   +  +  +    +FN LI    K    + A  
Sbjct: 341 EPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAML 400

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQI 330
           +F+K+    L  +VV Y  +I  L K G +
Sbjct: 401 VFSKMRQHGLNPNVVCYGTVIDVLCKSGSV 430



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 114/256 (44%), Gaps = 28/256 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++ ++I GF  EG+   A     +M      PNV T  ++I  L +   M+  ++
Sbjct: 201 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAME 260

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +   MV NG+        P+   Y S++ G C      +      +M+  G+  N +   
Sbjct: 261 VLNTMVKNGV-------MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYR 313

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +  EA ++ + M +RGL P I TY  LL GY   G +    AL D M R 
Sbjct: 314 SLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRN 373

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  PD   +++LI  Y K   V++AM V            F++M+   + P        I
Sbjct: 374 GIQPDHHVFNILICAYAKQEKVDQAMLV------------FSKMRQHGLNPNVVCYGTVI 421

Query: 252 DGLCKNGHVLEVMELF 267
           D LCK+G V + M  F
Sbjct: 422 DVLCKSGSVDDAMLYF 437



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 155/377 (41%), Gaps = 55/377 (14%)

Query: 8   LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGC---RPNVTTCDT 64
           L  +G+ I    R L DV  +S             A  L  +MA  G     P++ T   
Sbjct: 51  LRGWGASIYSFNRTLTDVARDSPAA----------AVSLFNRMARAGADEVTPDLCTYSI 100

Query: 65  LITGLRRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVFCYGSLIDGLCKDRLVDQTK 120
           LI    R G ++L          G    G +    ++     +  L+ GLC D+      
Sbjct: 101 LIGCCCRAGRLDL----------GFAALGNVIKKGFRVEAITFAPLLKGLCADKRTSDAM 150

Query: 121 DLFME-------MKDKGINANTLL----CKKTKLVEANRLLELMMQR---GLNPVIFTYT 166
           D+ +        M D  + + T+L    C + +  EA  LL +M      G  P + +YT
Sbjct: 151 DIVLRRMTELSCMPD--VFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT 208

Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
            ++NG+   G  + A + +  M  +   P+V +YS +I   CK   +++AM V   M+ N
Sbjct: 209 TVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKN 268

Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
           G            V+P+  T N  + G C +G   E +     +     E  V  + SL+
Sbjct: 269 G------------VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLM 316

Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
              CK G    A ++F+ ++ + L  D+  Y  L+     +G + + + LL  M  NG  
Sbjct: 317 NYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQ 376

Query: 347 LDVDTFNTLMISFLQKE 363
            D   FN L+ ++ ++E
Sbjct: 377 PDHHVFNILICAYAKQE 393



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 16/171 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+NS++ G+C  G  ++A   +KKM + G  PNV T  +L+  L + G      K+   
Sbjct: 275 MTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDS 334

Query: 85  MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLLC 138
           M   G+       +P++  Y +L+ G      + +   L   M   GI       N L+C
Sbjct: 335 MTKRGL-------EPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILIC 387

Query: 139 ---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
              K+ K+ +A  +   M Q GLNP +  Y  +++  C  G V+ A+  F+
Sbjct: 388 AYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFE 438


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 145/313 (46%), Gaps = 31/313 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN+LI G C  G + +A Q++ +M   G   N+ T +TLI GL   G     + + Q 
Sbjct: 90  VTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQG 149

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANTL------- 136
           M            P+   Y ++I G CK   +D+      EMK + G + +T        
Sbjct: 150 MTT---------TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILIN 200

Query: 137 -LCKKTKLVEANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            LCK + L +A+ LL+ M+ R      +  +  L++GYC    ++ A  L  SM   G  
Sbjct: 201 GLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCA 260

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV +YS +I+G C+  +V++   +  +M+  G K            P+  T  + + GL
Sbjct: 261 PDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCK------------PDVVTYTVLVTGL 308

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G ++E   L   +    C      ++ +  G CK    ++A++L   +  K  V DV
Sbjct: 309 CKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDV 368

Query: 315 VAYNILIHALGKE 327
           VA+  L+ ++ K 
Sbjct: 369 VAFETLLLSVKKR 381



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 170/371 (45%), Gaps = 37/371 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKM-ATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++ T+  L++  C+ G ++ A  L+++M    G  P  +  +  +  L ++G +   +  
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAM-- 74

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TL 136
             E+V  M D  G  KP+V  + +LI GLCK   +D+ + +  EM+  G  AN     TL
Sbjct: 75  --EVVKNMKD--GACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTL 130

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM-ARKGFMP 195
           +   +    +   + +M      P   TY  +++G+C  G+++ A    + M  R G  P
Sbjct: 131 INGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSP 190

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMI------------------------LNGFKKI 231
           D F+YS+LING CK+ N+ +A  + +EMI                        L+  +++
Sbjct: 191 DTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRAREL 250

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            + M      P+  T +  IDGLC+ G V +   L   +    C+  V  +  L+ G CK
Sbjct: 251 LSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCK 310

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A  L  ++       + V Y+++   L K  ++   N LL S+ + G   DV  
Sbjct: 311 AGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVA 370

Query: 352 FNTLMISFLQK 362
           F TL++S  ++
Sbjct: 371 FETLLLSVKKR 381



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 6/127 (4%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT++++I G C  G++     L++KM + GC+P+V T   L+TGL + G M    +L + 
Sbjct: 264 VTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKR 323

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M+           PN   Y  + DGLCK   +D   DL   ++DKG   + +  +   L 
Sbjct: 324 MLEDG------CTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLLLS 377

Query: 145 EANRLLE 151
              RLL+
Sbjct: 378 VKKRLLD 384


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 163/374 (43%), Gaps = 40/374 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P     FN L++     G +  A  +  +M   G  P V T +TL++G+ +  ++N    
Sbjct: 241 PPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANA 300

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--- 137
           L   M        G+  P+V+ YG+ + GLCK   +    ++F EM+++G+N NT++   
Sbjct: 301 LRGLMAK-----AGV-APDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTT 354

Query: 138 -----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                CK+  +     L   M  RG+   +  Y  L NG C V  +  A  + + M   G
Sbjct: 355 LIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNG 414

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK-------- 230
             PD  +Y+ LI+G+CK   ++ AM + +EM              +++G  K        
Sbjct: 415 LKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSE 474

Query: 231 -IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            I  EM    + P+  T  + ID  CKN  V    +L   ++    +  V  +N ++ G 
Sbjct: 475 RILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGF 534

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C  G  + A  L N +    +  D + YNIL+    K G+++    L       G   D 
Sbjct: 535 CILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDAEEL---KSAKGMVSDF 591

Query: 350 DTFNTLMISFLQKE 363
             + +L+  F++K+
Sbjct: 592 GLYTSLINEFVKKK 605



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 12/224 (5%)

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
           L+ +   + EA      ++  G+ P    +  L+      GK+  A  +FD M R+G  P
Sbjct: 218 LMNRLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPP 277

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
            V +++ L++G CK  +            LN    +   M    V P+ +T   F+ GLC
Sbjct: 278 TVVTFNTLMSGMCKASD------------LNSANALRGLMAKAGVAPDVYTYGAFMQGLC 325

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G + + +E+F  +          +F +LI   CK G      EL  +++ + +  D+V
Sbjct: 326 KAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLV 385

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           AYN L + L +   +K  N ++  M  NG   D  T+ TL+  F
Sbjct: 386 AYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGF 429


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 153/335 (45%), Gaps = 45/335 (13%)

Query: 17  RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76
            C  P +   FN L+  F  EG IR A  +   +  +G RP+V + +TL+ G  + G+++
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 77  LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
              +L   M        G+ +P+V+ Y  LI+GLCK+                       
Sbjct: 189 EGFRLKNAM-----QASGV-QPDVYTYSVLINGLCKE----------------------- 219

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
               +K+ +AN L E M+  GL P   T+T L++G+C  G+V +A+ ++  M  +   PD
Sbjct: 220 ----SKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPD 275

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +Y+ LI G CK  ++++A ++  EM + G K            P+  T    IDG CK
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK------------PDKITYTTLIDGSCK 323

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
            G +         +   N  L    + +LI G C+ G    A ++  ++    L  ++  
Sbjct: 324 EGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
           Y ++I+   K+G +   + LL  M+ +G    V T
Sbjct: 384 YTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 13/218 (5%)

Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
           A  + + + + GL P + ++  L+NGY  +G ++    L ++M   G  PDV++YSVLIN
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
           G CK   +E+A  +  EM+ NG            +VP   T    IDG CKNG V   ME
Sbjct: 215 GLCKESKMEDANELFEEMLDNG------------LVPNGVTFTTLIDGHCKNGRVXLAME 262

Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
           ++  +   +    +  +N+LI G CK G  + A +L +++S K L  D + Y  LI    
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSC 322

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           KEG ++        M +    LD D   T +IS L +E
Sbjct: 323 KEGDLETAXXYRKRMIKENIRLD-DVAYTALISGLCQE 359



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 152/345 (44%), Gaps = 28/345 (8%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  ++  L +     L    ++E +
Sbjct: 69  FSGLIIAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 87  N-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
             G       Y  +++ +  L+    K+  +   + +F  +   G+       NTL+   
Sbjct: 129 ECG-------YPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            K   L E  RL   M   G+ P ++TY+ L+NG C   K+  A  LF+ M   G +P+ 
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNG 241

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +++ LI+G+CKN  V  AM + ++M+              ++ P+  T N  I GLCK 
Sbjct: 242 VTFTTLIDGHCKNGRVXLAMEIYKQMLSQ------------SLSPDLITYNTLIYGLCKK 289

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G + +  +L   + +   +     + +LI G CK G  E A     ++  +N+  D VAY
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAY 349

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             LI  L +EG+      +L  M   G   ++ T+  ++  F +K
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 170/385 (44%), Gaps = 45/385 (11%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
           KV  + + F    R    P  DV T+  LI  FC  G I  A     +M + GC PNV T
Sbjct: 467 KVEKSFLLFQEMKRAGVNP--DVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVT 524

Query: 62  CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK--------- 112
              L+    ++  +     +   MV+        Y PN   Y +LIDGLCK         
Sbjct: 525 YTALLHAYLKSKQLIQAHDIFHRMVDA-----ACY-PNAVTYSALIDGLCKAGEIQKACE 578

Query: 113 --DRLVDQT----KDLFMEMKDK-GINANTL--------LCKKTKLVEANRLLELMMQRG 157
             ++L+  +     D + E  D   I  N +        LCK  K+ +A+ LL+ M+  G
Sbjct: 579 VYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAG 638

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
             P    Y  L++G+C +GK++ A  +F  M + G++P V +Y+ LI+   K+  ++ AM
Sbjct: 639 CEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAM 698

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
            V  EM+ +           CN  P   T    IDGL K G + + + L   +E   C  
Sbjct: 699 KVLSEMLNDS----------CN--PNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSP 746

Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
            V  + +LI G  K G  + + +LF +++ K    + V Y +LI+     G + + + LL
Sbjct: 747 NVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLL 806

Query: 338 LSMEENGCALDVDTFNTLMISFLQK 362
             M+       +  ++  +  F +K
Sbjct: 807 DEMKHTHWPKHLQGYHCAVQGFSKK 831



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 152/339 (44%), Gaps = 38/339 (11%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C    N VT+ +LI G C    + DA +L+  M   GC PN    D LI G  + G ++ 
Sbjct: 602 CTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDN 661

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
                QE+   M   G  Y P+V  Y SLID + KD  +D    +  EM +   N N + 
Sbjct: 662 A----QEVFLRMTKCG--YLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVT 715

Query: 137 -------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
                  L K  ++ +A  LL LM ++G +P + TYT L++G    GK + ++ LF  M 
Sbjct: 716 YTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMN 775

Query: 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKKIF--- 232
            KG  P+  +Y VLIN  C    ++EA  +  EM               + GF K F   
Sbjct: 776 SKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIAS 835

Query: 233 ----NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL-EISNCELFVE--IFNSL 285
                EM+    VP      + ID   K G +   +EL   L E+S+        ++ SL
Sbjct: 836 LGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASL 895

Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
           I+  C     E A  L+ +++ K +V D++ +  L+  L
Sbjct: 896 IQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGL 934



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 161/363 (44%), Gaps = 40/363 (11%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ +L+ GF  +       +++  M T GC PN +  ++L+ G    G+     KL 
Sbjct: 305 NVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLF 364

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLI--DGLCKDRLVDQTKDLFMEM--------KDKGIN 132
             M    G   G    N+F  GS+   + L    L+D  + ++ EM        K    N
Sbjct: 365 NRMTT-CGSPPGYVAYNIF-IGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTAN 422

Query: 133 ANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
            +  LC   K  +A ++L+ MM++G  P   TYT ++   C   KV  +  LF  M R G
Sbjct: 423 FSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAG 482

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
             PDV++Y++LI+ +CK   +E+A            +  F+EM+     P   T    + 
Sbjct: 483 VNPDVYTYTILIDSFCKAGLIEQA------------RSWFDEMRSVGCSPNVVTYTALLH 530

Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL--SCKNL 310
              K+  +++  ++F  +  + C      +++LI G CK G  + A E++ KL  +  N+
Sbjct: 531 AYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNV 590

Query: 311 VAD--------------VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
            +D              VV Y  LI  L K  ++   + LL +M   GC  +   ++ L+
Sbjct: 591 ESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALI 650

Query: 357 ISF 359
             F
Sbjct: 651 DGF 653



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 151/394 (38%), Gaps = 65/394 (16%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
            N L++  C  G   +A + + ++  FG RP+  T + L+  L   G + +  ++ +EM 
Sbjct: 172 LNVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMS 231

Query: 87  --------NGMGDFG------GIYK-------------PNVFCYGSLIDGLCKDRLVDQT 119
                   + +G F       G +                V C   +I GL +  L ++ 
Sbjct: 232 ASGFCMDRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLC-TQMISGLMEASLFNEA 290

Query: 120 KDLFMEMK-----DKGINANTLLC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
                 M+        +   TLL    KK +     R++ +MM  G NP    +  L++G
Sbjct: 291 MSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHG 350

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA------MNVSREMI- 224
           YC  G    A  LF+ M   G  P   +Y++ I   C    +  A        V  EM+ 
Sbjct: 351 YCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLA 410

Query: 225 -------------------LNGFKKIFN---EMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
                              +  F+K F    EM     VP+T T    I  LC+   V +
Sbjct: 411 ASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEK 470

Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
              LF  ++ +     V  +  LI   CK G+ E A   F+++       +VV Y  L+H
Sbjct: 471 SFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLH 530

Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           A  K  Q+ + + +   M +  C  +  T++ L+
Sbjct: 531 AYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALI 564



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 93/241 (38%), Gaps = 50/241 (20%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VT+ ++I G    G I  A  L+  M   GC PNV T   LI GL +TG  + +LKL 
Sbjct: 712 NVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLF 771

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--NANTLLCK- 139
           ++M N  G       PN   Y  LI+  C   L+D+   L  EMK      +     C  
Sbjct: 772 KQM-NSKG-----CAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAV 825

Query: 140 ---KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY------------------------ 172
                K + +  LLE M      P+   Y  L++ +                        
Sbjct: 826 QGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLN 885

Query: 173 --------------CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
                         CL  +V  A  L+  M RKG +PD+  +  L+ G  +    +EA+ 
Sbjct: 886 MTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQ 945

Query: 219 V 219
           +
Sbjct: 946 L 946



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 35/76 (46%)

Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
           E+   + N L+R CC+ G+++ A E   +L         V YN L+  L   GQ++    
Sbjct: 166 EVLRRLLNVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFR 225

Query: 336 LLLSMEENGCALDVDT 351
           +   M  +G  +D  T
Sbjct: 226 VQKEMSASGFCMDRST 241


>gi|359495888|ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Vitis vinifera]
          Length = 580

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 169/369 (45%), Gaps = 38/369 (10%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           K+  AL      I++   P + +T N L+ G C  G++  A  LV++M   G  PN  T 
Sbjct: 146 KLRAALWLRNKMIQKGVIP-DVLTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPNCATF 204

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
           +T I G     N++  L L   M N G+G       PN   Y  LI  LCK  L+   + 
Sbjct: 205 NTFIKGYCLNNNVDKALYLFSTMANSGIG-------PNKVTYNILIHALCKKGLLKDARK 257

Query: 122 LFMEMKD-------KGINANTLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
           L  ++ D         I  +T+      KK  +V+A    + M+QRG    +  Y  L++
Sbjct: 258 LLEKILDDDCGKETSDIITSTIFMDGCLKKGDMVQALVHWDEMLQRGTQIDVVAYNVLIH 317

Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
           G+CL+  +N A   F  M ++G +PD+F+Y+ LI+G+CK  N++EA              
Sbjct: 318 GFCLIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFCKIGNLDEAC------------Y 365

Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE---IFNSLIR 287
           I   M      P+  +  + I GLC +G V+   + F    + N  L V    I+N +I 
Sbjct: 366 IHGVMSKMGAAPDLISYKMIIQGLCIHGDVIRANQ-FLVCMLEN--LMVPEPLIWNVVID 422

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
           G  + G    A  + +++    +  +V  YN LIHA  K G I   + +   M  NG   
Sbjct: 423 GHGRHGDLSNALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVDAHSIKKEMLLNGIYP 482

Query: 348 DVDTFNTLM 356
           DV T+N L+
Sbjct: 483 DVVTYNLLI 491



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 64/348 (18%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGC---RPNVTTCD 63
           AL  F +       P N VT+N LI   C +G ++DA +L++K+    C     ++ T  
Sbjct: 220 ALYLFSTMANSGIGP-NKVTYNILIHALCKKGLLKDARKLLEKILDDDCGKETSDIITST 278

Query: 64  TLITGLRRTGNMNLTLKLHQEM---------------VNG---MGDFGGIYK-------- 97
             + G  + G+M   L    EM               ++G   + D    Y+        
Sbjct: 279 IFMDGCLKKGDMVQALVHWDEMLQRGTQIDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKR 338

Query: 98  ---PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEA 146
              P++F Y +LI G CK   +D+   +   M   G   + +        LC    ++ A
Sbjct: 339 GLLPDIFTYNTLISGFCKIGNLDEACYIHGVMSKMGAAPDLISYKMIIQGLCIHGDVIRA 398

Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
           N+ L  M++  + P    +  +++G+   G ++ A+++ D M   G  P+VF+Y+ LI+ 
Sbjct: 399 NQFLVCMLENLMVPEPLIWNVVIDGHGRHGDLSNALSIRDQMVSFGIPPNVFTYNALIHA 458

Query: 207 YCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPE 243
             K  N+ +A ++ +EM+LNG                         ++++EM      P+
Sbjct: 459 QIKGGNIVDAHSIKKEMLLNGIYPDVVTYNLLIGAACNFGRIHFALRLYDEMLRRGYEPD 518

Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
             T    I G C  GHV+E  EL   L+ S   +    F  LI+  C+
Sbjct: 519 IITYTELIRGFCIRGHVMEAEELLAKLQRSGLSIDHAPFQILIQKYCR 566



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 15/195 (7%)

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           ++   CL GK+  A+ L + M +KG +PDV +++ L+NG CK  ++E+A N+ REM+  G
Sbjct: 137 MIRNLCLEGKLRAALWLRNKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIG 196

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
                         P   T N FI G C N +V + + LF T+  S        +N LI 
Sbjct: 197 PS------------PNCATFNTFIKGYCLNNNVDKALYLFSTMANSGIGPNKVTYNILIH 244

Query: 288 GCCKFGIFEIASELFNKL---SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
             CK G+ + A +L  K+    C    +D++   I +    K+G + +       M + G
Sbjct: 245 ALCKKGLLKDARKLLEKILDDDCGKETSDIITSTIFMDGCLKKGDMVQALVHWDEMLQRG 304

Query: 345 CALDVDTFNTLMISF 359
             +DV  +N L+  F
Sbjct: 305 TQIDVVAYNVLIHGF 319



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 15/226 (6%)

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LC + KL  A  L   M+Q+G+ P + T+  L+NG C  G +  A  L   M   G  P+
Sbjct: 141 LCLEGKLRAALWLRNKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPN 200

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
             +++  I GYC N NV++A+             +F+ M    + P   T NI I  LCK
Sbjct: 201 CATFNTFIKGYCLNNNVDKAL------------YLFSTMANSGIGPNKVTYNILIHALCK 248

Query: 257 NGHVLEVMELFPTLEISNC-ELFVEIFNSLI--RGCCKFGIFEIASELFNKLSCKNLVAD 313
            G + +  +L   +   +C +   +I  S I   GC K G    A   ++++  +    D
Sbjct: 249 KGLLKDARKLLEKILDDDCGKETSDIITSTIFMDGCLKKGDMVQALVHWDEMLQRGTQID 308

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           VVAYN+LIH       +         M + G   D+ T+NTL+  F
Sbjct: 309 VVAYNVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGF 354



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
           ++IR  C  G    A  L NK+  K ++ DV+ +N L++ L K G ++K + L+  M E 
Sbjct: 136 AMIRNLCLEGKLRAALWLRNKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEI 195

Query: 344 GCALDVDTFNTLMISF 359
           G + +  TFNT +  +
Sbjct: 196 GPSPNCATFNTFIKGY 211


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 150/345 (43%), Gaps = 35/345 (10%)

Query: 9   MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDAS-QLVKKMATFGCRPNVTTCDTLIT 67
           + F  ++R    P +  + N LIK  C      DA+ ++ ++M   GC P+  T  TLI 
Sbjct: 140 LRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLIN 199

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
           GL R G +    +L +EM            P V  Y SLI GLC+ + +D    L  EM 
Sbjct: 200 GLCRLGKIGEAKELFKEMETKACS------PTVVTYTSLIHGLCQSKDLDSAIRLLEEMA 253

Query: 128 DKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
            KGI  N           CK      A  LL++M+ R   P + TY+ L++G C  GK+ 
Sbjct: 254 SKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQ 313

Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
            A+ + D M  +G  PD   Y  +I+G+C      EA N   EM+L G            
Sbjct: 314 EAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGG------------ 361

Query: 240 VVPETFTC-------NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
           + P   T        NI + GLC   H     +L+ ++      +  + F+SL+   C  
Sbjct: 362 ISPNRLTWSLHVRIHNIVVQGLCTE-HPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNK 420

Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
           G    A+ L +++     + D V +N ++ A     ++++   L+
Sbjct: 421 GDLHKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRESAELV 465



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 153/337 (45%), Gaps = 35/337 (10%)

Query: 42  DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
           DA ++ +KM  + C P+  +  T+   L     + L L+ ++ M   MG       P+V 
Sbjct: 103 DAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYM-REMG-----IPPSVA 156

Query: 102 CYGSLIDGLCKDR-LVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLEL 152
               LI  LCK+   +D    +F EM ++G   ++         LC+  K+ EA  L + 
Sbjct: 157 SLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKE 216

Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
           M  +  +P + TYT L++G C    ++ AI L + MA KG  P+VF+YS L++G+CK+  
Sbjct: 217 METKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGC 276

Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
              A+ +   M+                +P   T +  + GLCK G + E +E+   +++
Sbjct: 277 SSRALELLDMMVSRRH------------LPNMITYSTLVHGLCKEGKLQEAVEILDRMKL 324

Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD-------VVAYNILIHALG 325
                   ++  +I G C    F  A+   +++    +  +       V  +NI++  L 
Sbjct: 325 QGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLC 384

Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            E    +   L LSM   G ++D  TF++L+  F  K
Sbjct: 385 TE-HPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNK 420



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 14/259 (5%)

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKG-INANTLLCKKTKLVEANRLLELMMQRGLNPV 161
           YG +   L   R+  + K+   E   K  I    +L  + +L  A R    M + G+ P 
Sbjct: 95  YGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPS 154

Query: 162 IFTYTPLLNGYCL-VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
           + +   L+   C   G ++ A+ +F  M  +G  PD ++Y  LING C+   + EA    
Sbjct: 155 VASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEA---- 210

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
                   K++F EM+     P   T    I GLC++  +   + L   +     +  V 
Sbjct: 211 --------KELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVF 262

Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
            ++SL+ G CK G    A EL + +  +  + +++ Y+ L+H L KEG++++   +L  M
Sbjct: 263 TYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRM 322

Query: 341 EENGCALDVDTFNTLMISF 359
           +  G   D   +  ++  F
Sbjct: 323 KLQGLRPDAGLYGKIISGF 341



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 110/256 (42%), Gaps = 55/256 (21%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+ SLI G C   ++  A +L+++MA+ G +PNV T  +L+ G  ++G  +  L+L   
Sbjct: 227 VTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDM 286

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------- 137
           MV+        + PN+  Y +L+ GLCK+  + +  ++   MK +G+  +  L       
Sbjct: 287 MVSRR------HLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISG 340

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYT------------------------------ 166
            C   K  EA   L+ M+  G++P   T++                              
Sbjct: 341 FCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRT 400

Query: 167 -----------PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
                       L+N +C  G ++ A  L D M   G +PD  +++ ++  +     V E
Sbjct: 401 RGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRE 460

Query: 216 AMNVSREMILNGFKKI 231
           +  + +  ++   +K+
Sbjct: 461 SAELVQVELMVEHRKM 476


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 156/331 (47%), Gaps = 26/331 (7%)

Query: 10  AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
           A G+ I++ +R ++ + F  L+KG C +    DA  +V ++M   GC PNV + + L+ G
Sbjct: 113 ALGNVIKKGFR-VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 69  LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
           L         L+L Q M     D GG   P+V  Y ++I+G  K+  +D+    + EM D
Sbjct: 172 LCDENRSQEALELLQMMP----DDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD 227

Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
           +GI  N +        LCK   + +A  +L  M++ G+ P   TY  +++GYC  G+   
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240
           AI     M   G  PDV +Y+ L++  CKN    EA            +K+F+ M    +
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEA------------RKMFDSMTKRGL 335

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
            PE  T    + G    G ++E+  L   +  +       +F+ LI    K G  + A  
Sbjct: 336 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAML 395

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
           +F+K+  + L  D V Y  +I  L K G+++
Sbjct: 396 VFSKMRQQGLNPDTVTYGTVIGILCKSGRVE 426



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 132/293 (45%), Gaps = 28/293 (9%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P + V++ ++I GF  EG++  A     +M   G  PNV T  ++I  L +   M+  ++
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 81  LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
           +   MV NG+        PN   Y S++ G C      +      +M   G+  + +   
Sbjct: 256 VLTSMVKNGV-------MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYN 308

Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
                LCK  +  EA ++ + M +RGL P I TY  LL GY   G +     L D M R 
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
           G  P+ + +S+LI  Y K   V++AM V            F++M+   + P+T T    I
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLV------------FSKMRQQGLNPDTVTYGTVI 416

Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
             LCK+G V + M  F  +          ++NSLI   C F  ++ A + F K
Sbjct: 417 GILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYFLK 469



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 23/278 (8%)

Query: 96  YKPNVFCYGSLIDGLCKDRLVDQTKDLFME-MKDKGINANTL--------LCKKTKLVEA 146
           ++ +   +  L+ GLC D+      D+ +  M   G   N          LC + +  EA
Sbjct: 122 FRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEA 181

Query: 147 NRLLELMMQRGLN--PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
             LL++M   G +  P + +YT ++NG+   G ++ A   +  M  +G +P+V +YS +I
Sbjct: 182 LELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSII 241

Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
              CK   +++AM V   M+ NG            V+P   T N  + G C +G   E +
Sbjct: 242 AALCKAQAMDKAMEVLTSMVKNG------------VMPNCRTYNSIVHGYCSSGQPKEAI 289

Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
                +     E  V  +NSL+   CK G    A ++F+ ++ + L  ++  Y  L+   
Sbjct: 290 GFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             +G + + + LL  M  NG   +   F+ L+ ++ ++
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 15/205 (7%)

Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
           + P + TY  L+   C  G++++  A   ++ +KGF  D  +++ L+ G C +    +AM
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC---KNGHVLEVMELFPTLEISN 274
           ++           +   M     +P  F+ NI + GLC   ++   LE++++ P  +  +
Sbjct: 147 DI-----------VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD-DGGD 194

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V  + ++I G  K G  + A   ++++  + ++ +VV Y+ +I AL K   + K  
Sbjct: 195 CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 335 YLLLSMEENGCALDVDTFNTLMISF 359
            +L SM +NG   +  T+N+++  +
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGY 279



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 14/183 (7%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT+NSL+   C  G   +A ++   M   G +P +TT  TL+ G    G +     L   
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------L 136
           MV       GI+ PN + +  LI    K   VDQ   +F +M+ +G+N +T        +
Sbjct: 365 MVRN-----GIH-PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGI 418

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
           LCK  ++ +A R  E M+   L+P    Y  L++  C+  K + A   F     + F+  
Sbjct: 419 LCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYFLKCWIEAFVWT 478

Query: 197 VFS 199
           +FS
Sbjct: 479 LFS 481


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 156/317 (49%), Gaps = 31/317 (9%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM- 85
           ++S+I  +C  GN+R AS++  +    G  PN  T   LI G  + G M     L  +M 
Sbjct: 175 YSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQ 234

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN-----ANTLLC-- 138
           V G+G        N   + ++IDG C+  +VD+  ++ M M+  GI       NTL C  
Sbjct: 235 VRGVG-------INQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGL 287

Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            +  ++ EA  LL +M+++G+ P   +YT L++ +C  G +  A  LF  MA  G  P +
Sbjct: 288 RRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSL 347

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+V+++GY K  ++ EA            ++  NEM+   +VP+ ++    + G C N
Sbjct: 348 VTYNVMMDGYIKKGSIREA------------ERFKNEMEKKGLVPDIYSYAALVHGHCVN 395

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V   + LF  ++    +  +  + +LI G  K G  E A +L++ +    L  D   Y
Sbjct: 396 GKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALY 455

Query: 318 NILIHALGKEGQIKKEN 334
           + L+ +L  +   KK+N
Sbjct: 456 SALVGSLHTD---KKQN 469



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 121/256 (47%), Gaps = 26/256 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ T+ +LI GFC  G +  A  LV  M   G   N    +T+I G  R   ++  L++ 
Sbjct: 206 NEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEI- 264

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
           + ++  MG      + +V+ Y +L  GL +   +D+ K+L   M +KG+  N        
Sbjct: 265 KMIMEKMG-----IELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLI 319

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           ++ C +  +VEA RL   M   G  P + TY  +++GY   G +  A    + M +KG +
Sbjct: 320 SIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLV 379

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD++SY+ L++G+C N  V+ A+            ++F EMK     P        I GL
Sbjct: 380 PDIYSYAALVHGHCVNGKVDVAL------------RLFEEMKQRGSKPNLVAYTALISGL 427

Query: 255 CKNGHVLEVMELFPTL 270
            K G   E  +L+  +
Sbjct: 428 AKEGRSEEAFQLYDNM 443



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 163/375 (43%), Gaps = 49/375 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR----------- 70
           +N + +NSL+  +  E +    ++++K M   G  P V T   L+ GL            
Sbjct: 100 VNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAV 159

Query: 71  ----RTGNMNLTLKLHQEMVNGMGDFGGIYK--------------PNVFCYGSLIDGLCK 112
               ++ N++  +  +  ++N     G + +              PN   YG+LI+G CK
Sbjct: 160 FEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCK 219

Query: 113 DRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFT 164
              ++  + L  +M+ +G+  N ++        C+K  + +A  +  +M + G+   ++T
Sbjct: 220 IGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYT 279

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  L  G     +++ A  L   M  KG  P+  SY+ LI+ +C   ++ EA  + REM 
Sbjct: 280 YNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMA 339

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
            NG +            P   T N+ +DG  K G + E       +E       +  + +
Sbjct: 340 GNGAE------------PSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAA 387

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           L+ G C  G  ++A  LF ++  +    ++VAY  LI  L KEG+ ++   L  +M  +G
Sbjct: 388 LVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDG 447

Query: 345 CALDVDTFNTLMISF 359
              D   ++ L+ S 
Sbjct: 448 LTPDDALYSALVGSL 462



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 148/345 (42%), Gaps = 45/345 (13%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C   +  ++ + ++ G+C  G +  A QL+ +M   G + N    ++L+    R  + + 
Sbjct: 61  CPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDR 120

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137
             ++ + M N      GI +P V  Y  L+DGL   R + + + +F EMK K ++ +   
Sbjct: 121 VAEMLKVMENE-----GI-EPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGD--- 171

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
                                   ++ Y+ ++N YC  G V  A  +FD     G  P+ 
Sbjct: 172 ------------------------VYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNE 207

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y  LING+CK   +E A     EM++        +M++  V       N  IDG C+ 
Sbjct: 208 HTYGALINGFCKIGQMEAA-----EMLVT-------DMQVRGVGINQIVFNTMIDGYCRK 255

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V + +E+   +E    EL V  +N+L  G  +    + A  L   +  K +  + V+Y
Sbjct: 256 NMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSY 315

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             LI     EG + +   L   M  NG    + T+N +M  +++K
Sbjct: 316 TTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKK 360


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 165/370 (44%), Gaps = 30/370 (8%)

Query: 3    KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
            K+  A       I+R + P N  T   ++   C  G +  A    +KM   G +PN+   
Sbjct: 833  KIQEADRWLTGMIQRGFIPDN-ATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINF 891

Query: 63   DTLITGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             +LI GL + G++    ++ +EMV NG       +KPNV+ + +LIDGLCK    ++   
Sbjct: 892  TSLIDGLCKKGSIKQAFEMLEEMVRNG-------WKPNVYTHTALIDGLCKRGWTEKAFR 944

Query: 122  LFMEMKDKGI---NANTL------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
            LF+++        N +T        CK+ KL  A  L   M ++GL P + TYT L+NG+
Sbjct: 945  LFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGH 1004

Query: 173  CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
            C  G    A  L + M  +GFMP++++Y+  I+  CK     EA             ++ 
Sbjct: 1005 CKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAY------------ELL 1052

Query: 233  NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
            N+   C +  +  T  I I   CK   + + +  F  +  +  E  + + N LI   C+ 
Sbjct: 1053 NKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQ 1112

Query: 293  GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
               + +  LF  +    L+     Y  +I    KEG I        +M+ +GC  D  T+
Sbjct: 1113 KKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTY 1172

Query: 353  NTLMISFLQK 362
             +L+    +K
Sbjct: 1173 GSLISGLCKK 1182



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 147/354 (41%), Gaps = 65/354 (18%)

Query: 19   YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
            Y+P N  T+ S+I G+C E  +  A  L  +M   G  PNV T  TLI G  + G+    
Sbjct: 955  YKP-NVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRA 1013

Query: 79   LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL---------------- 122
                 E++N MGD G  + PN++ Y + ID LCK     +  +L                
Sbjct: 1014 Y----ELMNLMGDEG--FMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTY 1067

Query: 123  -------------------FMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQ 155
                               F  M   G  A+  L        C++ K+ E+ RL +L++ 
Sbjct: 1068 TILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVS 1127

Query: 156  RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
             GL P   TYT +++ YC  G +++A+  F +M R G +PD F+Y  LI+G CK   V+E
Sbjct: 1128 LGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDE 1187

Query: 216  AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
            A  +   MI  G              P   T        CK       M L   LE  + 
Sbjct: 1188 ACKLYEAMIDRGLS------------PPEVTRVTLAYEYCKRNDSANAMIL---LEPLDK 1232

Query: 276  ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
            +L++    +L+R  C      +A+  F KL  K+  AD V       A  + G+
Sbjct: 1233 KLWIRTVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSESGK 1286



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 146/339 (43%), Gaps = 46/339 (13%)

Query: 26   TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
            ++  ++ G   +G I++A + +  M   G  P+  TC  ++T L   G +N  +   ++M
Sbjct: 820  SYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKM 879

Query: 86   VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
            +    D G  +KPN+  + SLIDGLCK                           K  + +
Sbjct: 880  I----DLG--FKPNLINFTSLIDGLCK---------------------------KGSIKQ 906

Query: 146  ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-FMPDVFSYSVLI 204
            A  +LE M++ G  P ++T+T L++G C  G    A  LF  + R   + P+V +Y+ +I
Sbjct: 907  AFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMI 966

Query: 205  NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
             GYCK            E  LN  + +F+ MK   + P   T    I+G CK G      
Sbjct: 967  GGYCK------------EDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAY 1014

Query: 265  ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
            EL   +        +  +N+ I   CK      A EL NK     L AD V Y ILI   
Sbjct: 1015 ELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQ 1074

Query: 325  GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
             K+  I +       M + G   D+   N L+ +F +++
Sbjct: 1075 CKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQK 1113



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 123/257 (47%), Gaps = 21/257 (8%)

Query: 115  LVDQTKDLFMEMKDKGINANTLLCK--------KTKLVEANRLLELMMQRGLNPVIFTYT 166
            L++  +++F EM  +G+  ++   K          K+ EA+R L  M+QRG  P   T T
Sbjct: 798  LIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCT 857

Query: 167  PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
             +L   C  G VN AI  F  M   GF P++ +++ LI+G CK  ++++A  +  EM+ N
Sbjct: 858  LILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRN 917

Query: 227  GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC-ELFVEIFNSL 285
            G+K            P  +T    IDGLCK G   +   LF  L  S+  +  V  + S+
Sbjct: 918  GWK------------PNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSM 965

Query: 286  IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
            I G CK      A  LF+++  + L  +V  Y  LI+   K G   +   L+  M + G 
Sbjct: 966  IGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGF 1025

Query: 346  ALDVDTFNTLMISFLQK 362
              ++ T+N  + S  +K
Sbjct: 1026 MPNIYTYNAAIDSLCKK 1042



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 24/239 (10%)

Query: 142  KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
            +L EA  ++  M  +GL P   T   +L     +G +  A  +FD M+ +G +PD  SY 
Sbjct: 763  RLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYK 822

Query: 202  VLINGYCKNFNVEEAMNVSREMILNGF---------------------KKIFNEMKLCNV 240
            +++ G  ++  ++EA      MI  GF                     + I+   K+ ++
Sbjct: 823  LMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDL 882

Query: 241  --VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
               P        IDGLCK G + +  E+   +  +  +  V    +LI G CK G  E A
Sbjct: 883  GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKA 942

Query: 299  SELFNKL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
              LF KL        +V  Y  +I    KE ++ +   L   M+E G   +V+T+ TL+
Sbjct: 943  FRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLI 1001


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 157/345 (45%), Gaps = 26/345 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V +++LI GF  +GN  +A ++VK+M+  G +PN  T D LI GL + G M    ++ 
Sbjct: 347 NVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRIL 406

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
           ++M   +G     Y  +   Y  +I+G  +    ++   L  EM+  GI+ N        
Sbjct: 407 KQMTK-IG-----YMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIII 460

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             LC+  +   A+ LLE M+  GL P  F Y PL++GYC  G  ++A      M R+   
Sbjct: 461 NGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLT 520

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD++ Y+ LI G      ++EA+    EM+  GF+            P  FT    I G 
Sbjct: 521 PDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQ------------PNDFTYGGLIHGY 568

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
              G++ +  +L   +  S       I+  ++ G  K    E  S     +  K L+ D 
Sbjct: 569 SMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDN 628

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
             Y I+IH L   G ++    +L  +E+NG   D   + +L+  F
Sbjct: 629 RLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGF 673



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 160/348 (45%), Gaps = 27/348 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N   +  LI G+C EG+   A + +KKM      P++   ++LI GL   G M+  ++ +
Sbjct: 487 NAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYY 546

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC---- 138
            EM+         ++PN F YG LI G      +++ + L  +M + G+N N  +     
Sbjct: 547 DEMLEKG------FQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQIL 600

Query: 139 ----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
               K   L + +  L+ M+++GL P    Y  +++     G +  A+++   + + G +
Sbjct: 601 EGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLV 660

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD   Y  LI+G+CK  ++E+A+ +  EM   G +            P     N  IDG 
Sbjct: 661 PDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIE------------PGISCYNALIDGF 708

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK+  +     +F ++           + +LI G CK G    A +L+N++  + +  D 
Sbjct: 709 CKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDA 768

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             Y++L       G +++  ++   M   G A+ + +FNTL+  F ++
Sbjct: 769 FVYSVLAAGCSNSGDLQQALFITEEMIARGYAI-ISSFNTLVHGFCKR 815



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 143/331 (43%), Gaps = 26/331 (7%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           LN VT+N+LI G C  G I +A    K+M  +G  P+  T   +I GL + G  +    L
Sbjct: 276 LNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCL 335

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
             EM        G+  PNV  Y +LIDG  +    D+   +  EM   G+  N +     
Sbjct: 336 LDEM-----SCAGLM-PNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNL 389

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LCK  ++  A+R+L+ M + G      TY  ++ G+        A  L + M + G 
Sbjct: 390 IRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGI 449

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P+V++YS++ING C+    E A  +  +MI +G K            P  F     I G
Sbjct: 450 SPNVYTYSIIINGLCQIGESERASGLLEQMIADGLK------------PNAFVYAPLISG 497

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
            C+ G      E    +   N    +  +NSLI G    G  + A E ++++  K    +
Sbjct: 498 YCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPN 557

Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENG 344
              Y  LIH     G ++K   LL  M  +G
Sbjct: 558 DFTYGGLIHGYSMAGNLEKAEQLLHQMLNSG 588



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 161/371 (43%), Gaps = 40/371 (10%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP   V  + L+  +   G +RD +++V  M   G  P++  C+ L+  L R   ++L  
Sbjct: 172 RP---VVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLW 228

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INAN 134
           K     V G  +  GI  P+V+ Y +LI+  CK R ++  K +  EM++ G     +  N
Sbjct: 229 K-----VRGFMEGAGI-SPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYN 282

Query: 135 TL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           TL   LC+   + EA    + M   GL P  FTY  ++NG C  G+ + A  L D M+  
Sbjct: 283 TLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCA 342

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---------------------- 229
           G MP+V  YS LI+G+ +  N +EA  + +EM   G +                      
Sbjct: 343 GLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRA 402

Query: 230 -KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
            +I  +M     + +T T N+ I+G  +  +  E   L   +        V  ++ +I G
Sbjct: 403 SRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIING 462

Query: 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
            C+ G  E AS L  ++    L  +   Y  LI    +EG        L  M       D
Sbjct: 463 LCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPD 522

Query: 349 VDTFNTLMISF 359
           +  +N+L+I  
Sbjct: 523 LYCYNSLIIGL 533



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 151/340 (44%), Gaps = 51/340 (15%)

Query: 7   ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
           A+  +   + + ++P ND T+  LI G+ M GN+  A QL+ +M   G  PN      ++
Sbjct: 542 AIEYYDEMLEKGFQP-NDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQIL 600

Query: 67  TGLRRTGNM---NLTLK------------LHQEMVNGMGDFGGIYK-------------- 97
            G  ++ N+   + TLK            L+  +++ +   G +                
Sbjct: 601 EGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLV 660

Query: 98  PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---CKKTKLVEANRL 149
           P+   YGSLI G CK   +++   L  EM  KGI       N L+   CK   +  A  +
Sbjct: 661 PDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNI 720

Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
              ++ +GL P   TYT L++GYC  G +  AI L++ M  +G  PD F YSVL  G   
Sbjct: 721 FNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSN 780

Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
           + ++++A+ ++ EMI  G+  I            +F  N  + G CK G + E ++    
Sbjct: 781 SGDLQQALFITEEMIARGYAII-----------SSF--NTLVHGFCKRGKLQETVKFLHV 827

Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309
           +   +    +    +++ G  + G    A  +F +L  KN
Sbjct: 828 MMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKN 867



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 125/267 (46%), Gaps = 22/267 (8%)

Query: 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC---------KKTKLVEANRLLELMMQR 156
           L+D   K   V    ++ + MKD G+ A +L C         +   L    ++   M   
Sbjct: 179 LVDTYKKTGRVRDGAEVVLLMKDLGL-APSLRCCNGLLKDLLRADALDLLWKVRGFMEGA 237

Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
           G++P ++TY+ L+  YC V  +  A  + + M   G   +V +Y+ LI G C+   +EEA
Sbjct: 238 GISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEA 297

Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
                     G+KK   EM+   +VP+ FT    I+GLCK G   +   L   +  +   
Sbjct: 298 F---------GYKK---EMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLM 345

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
             V ++++LI G  + G  + A ++  ++S   +  + + Y+ LI  L K G++ + + +
Sbjct: 346 PNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRI 405

Query: 337 LLSMEENGCALDVDTFNTLMISFLQKE 363
           L  M + G   D  T+N ++   L++ 
Sbjct: 406 LKQMTKIGYMADTMTYNLVIEGHLRQH 432



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 36/200 (18%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P N VT+ +LI G+C  G+IRDA  L  +M T G  P+      L  G   +G++   L 
Sbjct: 730 PPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALF 789

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
           + +EM+             +  + +L+ G CK   + +T      M DK I  + L    
Sbjct: 790 ITEEMIARGYAI-------ISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVEN 842

Query: 137 ----LCKKTKLVEANRL-LEL-------------------MMQRGLNPVIFTYTPLLNGY 172
               L +  KL EA+ + +EL                   M+ +GL P+   +  ++  +
Sbjct: 843 IVIGLGEAGKLSEAHTIFVELQQKNASHRDTDHLSSLFTDMINQGLVPLDVIHN-MIQSH 901

Query: 173 CLVGKVNVAIALFDSMARKG 192
           C  G ++ A+ L D++  KG
Sbjct: 902 CKQGYLDKALMLHDALVAKG 921


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 156/317 (49%), Gaps = 31/317 (9%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM- 85
           ++S+I  +C  GN+R AS++  +    G  PN  T   LI G  + G M     L  +M 
Sbjct: 251 YSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQ 310

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN-----ANTLLC-- 138
           V G+G        N   + ++IDG C+  +VD+  ++ M M+  GI       NTL C  
Sbjct: 311 VRGVG-------INQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGL 363

Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
            +  ++ EA  LL +M+++G+ P   +YT L++ +C  G +  A  LF  MA  G  P +
Sbjct: 364 RRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSL 423

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+V+++GY K  ++ EA            ++  NEM+   +VP+ ++    + G C N
Sbjct: 424 VTYNVMMDGYIKKGSIREA------------ERFKNEMEKKGLVPDIYSYAALVHGHCVN 471

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G V   + LF  ++    +  +  + +LI G  K G  E A +L++ +    L  D   Y
Sbjct: 472 GKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALY 531

Query: 318 NILIHALGKEGQIKKEN 334
           + L+ +L  +   KK+N
Sbjct: 532 SALVGSLHTD---KKQN 545



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 120/253 (47%), Gaps = 26/253 (10%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N+ T+ +LI GFC  G +  A  LV  M   G   N    +T+I G  R   ++  L++ 
Sbjct: 282 NEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEI- 340

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
           + ++  MG      + +V+ Y +L  GL +   +D+ K+L   M +KG+  N        
Sbjct: 341 KMIMEKMG-----IELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLI 395

Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
           ++ C +  +VEA RL   M   G  P + TY  +++GY   G +  A    + M +KG +
Sbjct: 396 SIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLV 455

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PD++SY+ L++G+C N  V+ A+            ++F EMK     P        I GL
Sbjct: 456 PDIYSYAALVHGHCVNGKVDVAL------------RLFEEMKQRGSKPNLVAYTALISGL 503

Query: 255 CKNGHVLEVMELF 267
            K G   E  +L+
Sbjct: 504 AKEGRSEEAFQLY 516



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 163/375 (43%), Gaps = 49/375 (13%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR----------- 70
           +N + +NSL+  +  E +    ++++K M   G  P V T   L+ GL            
Sbjct: 176 VNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAV 235

Query: 71  ----RTGNMNLTLKLHQEMVNGMGDFGGIYK--------------PNVFCYGSLIDGLCK 112
               ++ N++  +  +  ++N     G + +              PN   YG+LI+G CK
Sbjct: 236 FEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCK 295

Query: 113 DRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFT 164
              ++  + L  +M+ +G+  N ++        C+K  + +A  +  +M + G+   ++T
Sbjct: 296 IGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYT 355

Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
           Y  L  G     +++ A  L   M  KG  P+  SY+ LI+ +C   ++ EA  + REM 
Sbjct: 356 YNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMA 415

Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
            NG +            P   T N+ +DG  K G + E       +E       +  + +
Sbjct: 416 GNGAE------------PSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAA 463

Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
           L+ G C  G  ++A  LF ++  +    ++VAY  LI  L KEG+ ++   L  +M  +G
Sbjct: 464 LVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDG 523

Query: 345 CALDVDTFNTLMISF 359
              D   ++ L+ S 
Sbjct: 524 LTPDDALYSALVGSL 538



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 148/345 (42%), Gaps = 45/345 (13%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C   +  ++ + ++ G+C  G +  A QL+ +M   G + N    ++L+    R  + + 
Sbjct: 137 CPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDR 196

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137
             ++ + M N      GI +P V  Y  L+DGL   R + + + +F EMK K ++ +   
Sbjct: 197 VAEMLKVMENE-----GI-EPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGD--- 247

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
                                   ++ Y+ ++N YC  G V  A  +FD     G  P+ 
Sbjct: 248 ------------------------VYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNE 283

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y  LING+CK   +E A     EM++        +M++  V       N  IDG C+ 
Sbjct: 284 HTYGALINGFCKIGQMEAA-----EMLVT-------DMQVRGVGINQIVFNTMIDGYCRK 331

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
             V + +E+   +E    EL V  +N+L  G  +    + A  L   +  K +  + V+Y
Sbjct: 332 NMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSY 391

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
             LI     EG + +   L   M  NG    + T+N +M  +++K
Sbjct: 392 TTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKK 436


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 166/374 (44%), Gaps = 40/374 (10%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P     FN L++     G +  A  +  +M   G +P V T +TL++G+ +  ++N    
Sbjct: 239 PPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLN---- 294

Query: 81  LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--- 137
            +   + G+    GI  P+V+ YG+ I GLCK   +    ++F EM ++G+N NT++   
Sbjct: 295 -NANALRGLMAKAGI-APDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTT 352

Query: 138 -----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
                CK+  +     L   M  RG+   +  Y  L+NG+C V  +  A  + + M + G
Sbjct: 353 LIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDG 412

Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK-------- 230
             PD  +Y+ LI+G CK   ++ AM + +EM              +++G  K        
Sbjct: 413 LKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAE 472

Query: 231 -IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
            I  EM    + P+  T  + ID  CKNG V    +    ++       +  +N ++ G 
Sbjct: 473 RILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGF 532

Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
           C  G  + A  L N +    +  + + YNIL+    K G+++    L       G   D 
Sbjct: 533 CSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEEL---KSAKGMVSDF 589

Query: 350 DTFNTLMISFLQKE 363
             + +L+  F++K+
Sbjct: 590 GVYTSLINEFVKKK 603



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 12/221 (5%)

Query: 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
           L+ +   + EA      ++  G+ P    +  L+      GK+  A  +FD M R+G  P
Sbjct: 216 LMNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQP 275

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
            V +++ L++G CK  ++  A         N  + +   M    + P+ +T   FI GLC
Sbjct: 276 TVVTFNTLMSGMCKASDLNNA---------NALRGL---MAKAGIAPDVYTYGAFIQGLC 323

Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
           K G + + ME+F  +          +  +LI   CK G      EL  +++ + + AD+V
Sbjct: 324 KTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLV 383

Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           AYN L++   +   +K  N ++  M ++G   D  T+ TL+
Sbjct: 384 AYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLI 424


>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
          Length = 642

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 169/406 (41%), Gaps = 76/406 (18%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           +N V  N+++ GFC EG + +A +LV++M   G  PNV T ++ I+ L + G +    ++
Sbjct: 205 MNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRI 264

Query: 82  HQEM-------------------VNGMGDFG--------------GIYKPNVFCYGSLID 108
            ++M                   ++G  D G              G +   V  Y   + 
Sbjct: 265 FKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLS 324

Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNP 160
           GL ++  V +  +L  EM  + I+ N+         LCK+ K  +A R+   +    ++P
Sbjct: 325 GLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSP 384

Query: 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220
            + TYT LL+ YC  G +  A  + D MA+KG  P+ F+Y+VL+    +     EA  + 
Sbjct: 385 DVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLL 444

Query: 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
             M   G+              +T  CNI IDGLC+N  +   M +   +          
Sbjct: 445 ERMSEKGYSL------------DTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGSTALGR 492

Query: 281 IFNS-----------------------LIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           + NS                       LI   CK G F+ A +   ++  K++  D V Y
Sbjct: 493 LGNSFLSVVSDSSISQRCLPDRITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIY 552

Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           +  IH   K G+      +L  ME+ GC     T+N L+  F +K 
Sbjct: 553 DTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKH 598



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 169/362 (46%), Gaps = 26/362 (7%)

Query: 20  RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
           RP + VTF+ ++ GFC  G + +A  LV  M   G    V + +  ++GL R G +    
Sbjct: 278 RP-DQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAH 336

Query: 80  KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTK-DLFME---MKDKGINAN 134
           +L +EM +          PN + Y  ++ GLCK+ +  D  + + F+    M    +   
Sbjct: 337 ELLREMAHER------IHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYT 390

Query: 135 TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
           +LL   C K  +  ANR+L+ M Q+G  P  FTY  LL      G+   A  L + M+ K
Sbjct: 391 SLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEK 450

Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM----------ILNGFKKIFNEMKLCN-V 240
           G+  D    +++I+G C+N  ++ AM +   M          + N F  + ++  +    
Sbjct: 451 GYSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRC 510

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           +P+  T +I I  LCK G   E  +    + + +      I+++ I G CK G   +A +
Sbjct: 511 LPDRITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIK 570

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           +   +  K        YN+LI    ++ +  +   L+  MEE G + +V T+N+L+ SF 
Sbjct: 571 VLRDMEKKGCNPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVSPNVLTYNSLIKSFC 630

Query: 361 QK 362
           Q+
Sbjct: 631 QQ 632



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 160/369 (43%), Gaps = 45/369 (12%)

Query: 21  PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
           P     +N LI     E  +     L K +   G +P+V T + L+  L   G M L  +
Sbjct: 107 PPPTPVYNRLILTALRESRLDLVEALYKDLLLAGAQPDVFTRNLLLRALCDAGRMELAQR 166

Query: 81  LHQEM---------------------VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
           + + M                     V+ +    G+   N+    +++ G CK+ LV++ 
Sbjct: 167 VFEAMPVRNEFSFGILARGYCRAGRSVDALKVLDGMPSMNLVVCNTVVAGFCKEGLVEEA 226

Query: 120 KDLFMEMKDKGINAN--------TLLCKKTKLVEANRLLELM---MQRGL-NPVIFTYTP 167
           + L   M+ +G+  N        + LCK  ++++A R+ + M    Q GL  P   T+  
Sbjct: 227 ERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDWQHGLPRPDQVTFDV 286

Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
           +L+G+C  G V+ A  L D M   GF+  V SY+  ++G  +N  V EA  + REM    
Sbjct: 287 MLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAHELLREM---A 343

Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
            ++I          P ++T NI + GLCK G   +   +   +        V  + SL+ 
Sbjct: 344 HERIH---------PNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLH 394

Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
             C  G    A+ + ++++ K    +   YN+L+ +L + G+  +   LL  M E G +L
Sbjct: 395 AYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEKGYSL 454

Query: 348 DVDTFNTLM 356
           D    N ++
Sbjct: 455 DTAGCNIII 463



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 127/282 (45%), Gaps = 22/282 (7%)

Query: 14  FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
           FIR      + VT+ SL+  +C +GNI  A++++ +MA  GC PN  T + L+  L R G
Sbjct: 376 FIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAG 435

Query: 74  NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
                    + ++  M + G  Y  +      +IDGLC++  +D    +   M ++G  A
Sbjct: 436 RTTEA----ERLLERMSEKG--YSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGSTA 489

Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              L      V ++  +    QR L P   TY+ L++  C  G+ + A      M  K  
Sbjct: 490 LGRLGNSFLSVVSDSSIS---QRCL-PDRITYSILISALCKEGRFDEAKKKLLEMIVKDI 545

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            PD   Y   I+GYCK+     A+ V R+M          E K CN  P T T N+ I G
Sbjct: 546 SPDSVIYDTFIHGYCKHGKTSLAIKVLRDM----------EKKGCN--PSTRTYNLLIRG 593

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
             +     E+M+L   +E       V  +NSLI+  C+ G+ 
Sbjct: 594 FEEKHKSDEIMKLMSEMEEKGVSPNVLTYNSLIKSFCQQGML 635


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 145/313 (46%), Gaps = 31/313 (9%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VTFN+LI G C  G + +A Q++ +M   G   N+ T +TLI GL   G     + + Q 
Sbjct: 90  VTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQG 149

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANTL------- 136
           M            P+   Y ++I G CK   +D+      EMK + G + +T        
Sbjct: 150 MTT---------TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILIN 200

Query: 137 -LCKKTKLVEANRLLELMMQR-GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
            LCK + L +A+ LL+ M+ R      +  +  L++GYC    ++ A  L  SM   G  
Sbjct: 201 GLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCA 260

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV +YS +I+G C+  +V++   +  +M+  G K            P+  T  + + GL
Sbjct: 261 PDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCK------------PDVVTYTVLVTGL 308

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
           CK G ++E   L   +    C      ++ +  G CK    ++A++L   +  K  + DV
Sbjct: 309 CKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDV 368

Query: 315 VAYNILIHALGKE 327
           VA+  L+ ++ K 
Sbjct: 369 VAFEALLLSVKKR 381



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 169/371 (45%), Gaps = 37/371 (9%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKM-ATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           ++ T+  L++  C+ G ++ A  L+++M    G  P  +  +  +  L ++G +   +  
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAM-- 74

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TL 136
             E+V  M D  G  KP+V  + +LI GLCK   +D+ + +  EM+  G  AN     TL
Sbjct: 75  --EVVKNMKD--GACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTL 130

Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM-ARKGFMP 195
           +   +    +   + +M      P   TY  +++G+C  G+++ A    + M  R G  P
Sbjct: 131 INGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSP 190

Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMI------------------------LNGFKKI 231
           D F+YS+LING CK+ N+ +A  + +EMI                        L+  +++
Sbjct: 191 DTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRAREL 250

Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
            + M      P+  T +  IDGLC+ G V +   L   +    C+  V  +  L+ G CK
Sbjct: 251 LSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCK 310

Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
            G    A  L  ++       + V Y+++   L K  ++   N LL S+ + G   DV  
Sbjct: 311 AGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVA 370

Query: 352 FNTLMISFLQK 362
           F  L++S  ++
Sbjct: 371 FEALLLSVKKR 381



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 6/127 (4%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           VT++++I G C  G++     L++KM + GC+P+V T   L+TGL + G M    +L + 
Sbjct: 264 VTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKR 323

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144
           M+           PN   Y  + DGLCK   +D   DL   ++DKG   + +  +   L 
Sbjct: 324 MLEDG------CTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALLLS 377

Query: 145 EANRLLE 151
              RLL+
Sbjct: 378 VKKRLLD 384


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 142/306 (46%), Gaps = 26/306 (8%)

Query: 25  VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
           +T+N LI G C  G   DA +L+  M   GC P+V T + LI  L R G +   +    +
Sbjct: 155 ITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAI----D 210

Query: 85  MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
           ++  M   G    PN   Y  L+ G CK++ +++  +   +M  +G     +  NTLL  
Sbjct: 211 VLEKMPKHG--CTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTA 268

Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
            CK  K+  A  LL  +  +G +PV+ TY  +++G   VGK + A  L D M  KG  PD
Sbjct: 269 LCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPD 328

Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
           + +YS L+ G  +   V+EA+            K F+++++  V P   T N  + GLCK
Sbjct: 329 IITYSSLVGGLSREGKVDEAI------------KFFHDLEVLGVKPNAITYNAIMLGLCK 376

Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
                  ++    +    C+     +  LI G    G+ + A EL N+L  + +V    A
Sbjct: 377 ARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGVVKKSSA 436

Query: 317 YNILIH 322
             + + 
Sbjct: 437 EKVAVR 442



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 148/336 (44%), Gaps = 45/336 (13%)

Query: 24  DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
           ++  N+ +      G + +  + ++ M   G  P++  C +LI G  + G      ++  
Sbjct: 84  EIESNNNLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRI-M 142

Query: 84  EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143
           E++    D G +  P+V  Y  LI G+C                              + 
Sbjct: 143 EIIE---DSGAV--PDVITYNVLISGMCS---------------------------TGRW 170

Query: 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL 203
           ++A +LL  M++RG +P + T+  L+N  C  G +  AI + + M + G  P+  SY+ L
Sbjct: 171 MDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPL 230

Query: 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
           ++G+CK   +E A+    +M   G              P+  T N  +  LCK+G V   
Sbjct: 231 LHGFCKEKKMERAIEYLGKMTSRG------------CYPDIVTYNTLLTALCKDGKVDAA 278

Query: 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323
           +EL   L    C   +  +N++I G  K G  + A++L +++  K L  D++ Y+ L+  
Sbjct: 279 VELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGG 338

Query: 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
           L +EG++ +       +E  G   +  T+N +M+  
Sbjct: 339 LSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGL 374



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 14/216 (6%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N +++N L+ GFC E  +  A + + KM + GC P++ T +TL+T L + G ++  +   
Sbjct: 223 NSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAV--- 279

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
            E++N +   G    P +  Y ++IDGL K    DQ   L  EM+ KG+  + +      
Sbjct: 280 -ELLNQLSSKG--CSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLV 336

Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
             L ++ K+ EA +    +   G+ P   TY  ++ G C   K + AI     M ++G  
Sbjct: 337 GGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCK 396

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
           P   SY++LI G       +EA+ +  E+ L G  K
Sbjct: 397 PTEASYTILIEGLAYEGLAKEALELLNELCLRGVVK 432



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 59/123 (47%)

Query: 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300
           +P+   C   I G CK G   +   +   +E S     V  +N LI G C  G +  A +
Sbjct: 116 IPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEK 175

Query: 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
           L   +  +     VV +NILI+ L ++G + +   +L  M ++GC  +  ++N L+  F 
Sbjct: 176 LLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFC 235

Query: 361 QKE 363
           +++
Sbjct: 236 KEK 238


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 164/349 (46%), Gaps = 26/349 (7%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N V+ + LIKGFC  G I +A  L  ++   G  P++ T   LI G  ++GN+     L+
Sbjct: 411 NVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLY 470

Query: 83  QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL 137
           ++M+    +      P+   Y  LI+GLCK  LV      F +  ++G++ N     TLL
Sbjct: 471 EDMIKKRCE------PDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLL 524

Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
              C+   +V A ++  LM    +     TYT L+ G    G+V+ A+ LF  M +K F 
Sbjct: 525 DSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFK 584

Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
           PDV +Y  LI+G CK       +             IF+ M    V P+    N+ I+  
Sbjct: 585 PDVITYCTLIDGLCKLKKSSAGLC------------IFDFMCKNAVAPDIAIYNVLINMH 632

Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
            + GH+   + LF  +     +  V  FN++I   C F   + A +LF K++ + L  + 
Sbjct: 633 SREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNA 692

Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
           + + ILI A  +EG++     +   M E G   ++ T++ L+  + + +
Sbjct: 693 ITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQ 741



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 176/378 (46%), Gaps = 40/378 (10%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
           F   +R   +P N VTF++LI  +C EGN+  A  L   MA  G  P++     LI GL 
Sbjct: 295 FNMVVRIGPKP-NVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLF 353

Query: 71  RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
           + G     L+  Q ++    D G   K +V  + S +D   K   + +   ++  M ++G
Sbjct: 354 KAGR----LEDGQRLLLVALDKG--IKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEG 407

Query: 131 INANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
           I+ N +         C+  +++EA  L   +++ G  P I TY+ L+ G+C  G +    
Sbjct: 408 ISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGF 467

Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN-----VSREMILNGFK-------- 229
            L++ M +K   PD   YSVLING CK   V +A+      V+R +  N F         
Sbjct: 468 YLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSF 527

Query: 230 ----------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
                     K++  M + N+  +T T  I I G  + G V E + LF  +   + +  V
Sbjct: 528 CRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDV 587

Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA-DVVAYNILIHALGKEGQIKKENYLLL 338
             + +LI G CK         +F+   CKN VA D+  YN+LI+   +EG ++    L +
Sbjct: 588 ITYCTLIDGLCKLKKSSAGLCIFD-FMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFV 646

Query: 339 SMEENGCALDVDTFNTLM 356
            + E G   DV TFNT++
Sbjct: 647 HVVERGPKPDVFTFNTMI 664



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 163/345 (47%), Gaps = 30/345 (8%)

Query: 22  LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
           L+ +T N ++KG  M+ +I  A      +   G +PNV T  TLI    + GN++    L
Sbjct: 270 LDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVL 329

Query: 82  HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
              M       G    P++  Y  LIDGL K   ++  + L +   DKGI  + +     
Sbjct: 330 FDVMA------GNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSA 383

Query: 137 LCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
           +    K+ +  R++++   M+  G++P + + + L+ G+C  G++  A  LF  + + GF
Sbjct: 384 MDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGF 443

Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
            P + +YS LI G+CK+ N+ +   +  +MI           K C   P+T   ++ I+G
Sbjct: 444 EPSILTYSALIAGFCKSGNLRDGFYLYEDMI----------KKRCE--PDTIVYSVLING 491

Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFEIASELFNKLSCKNLV 311
           LCK G V + +  F   +  N  L   +F  N+L+   C+      A +++  +   N+ 
Sbjct: 492 LCKQGLVGDALRFF--FQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIK 549

Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
           AD V Y ILI    + G++ +   L   M +     DV T+ TL+
Sbjct: 550 ADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLI 594



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 172/398 (43%), Gaps = 76/398 (19%)

Query: 3   KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
           ++L A   F   ++  + P + +T+++LI GFC  GN+RD   L + M    C P+    
Sbjct: 427 RILEACGLFVQILKLGFEP-SILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVY 485

Query: 63  DTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
             LI GL + G +   L+   + VN G+        PNVF   +L+D  C+ + +     
Sbjct: 486 SVLINGLCKQGLVGDALRFFFQAVNRGLS-------PNVFTLNTLLDSFCRLKCIVGAMK 538

Query: 122 LFMEMKDKGINANT----LLCKKT----KLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
           ++  M    I A+T    +L K      ++ EA  L   M+++   P + TY  L++G C
Sbjct: 539 VYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLC 598

Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK--- 230
            + K +  + +FD M +    PD+  Y+VLIN + +  ++E A+ +   ++  G K    
Sbjct: 599 KLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVF 658

Query: 231 IFNEMKLC--------------------NVVPETFTCNIFIDGLCKNGHVLEVMELF--- 267
            FN M  C                     + P   T  I ID  C+ G + + M +F   
Sbjct: 659 TFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKM 718

Query: 268 ------PTLEISNC----------------ELFVEI-----------FNSLIRGCCKFGI 294
                 P L   +C                +L+ E+           ++ LI G CK G+
Sbjct: 719 LEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGL 778

Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
            + AS  F     K+L+ DV+AY ILI    K G++ +
Sbjct: 779 MKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTE 816



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 139/331 (41%), Gaps = 65/331 (19%)

Query: 94  GIY-KPNV--FCYGSLIDGLCKDRLVDQTKDLFMEMKDK--------------------- 129
           GI+  PNV     GSLID  C + +VD+  +L   M+++                     
Sbjct: 197 GIFVSPNVVYLLLGSLIDSHCVEVIVDKYGELCSAMREQPFSVYEFVMNRFMNKGEVEMG 256

Query: 130 ----------GINANTLLCKK--------TKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
                     G   + + C K          +  A+    ++++ G  P + T++ L++ 
Sbjct: 257 LRFHKALVQGGFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFSTLIDA 316

Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE-------AMNVSREMI 224
           YC  G ++ A  LFD MA  G  PD+  YS+LI+G  K   +E+       A++   ++ 
Sbjct: 317 YCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLD 376

Query: 225 LNGFK----------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
           + GF                 +I+  M    + P   +C+I I G C+NG +LE   LF 
Sbjct: 377 VVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFV 436

Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
            +     E  +  +++LI G CK G       L+  +  K    D + Y++LI+ L K+G
Sbjct: 437 QILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQG 496

Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISF 359
            +             G + +V T NTL+ SF
Sbjct: 497 LVGDALRFFFQAVNRGLSPNVFTLNTLLDSF 527



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 94/200 (47%), Gaps = 17/200 (8%)

Query: 10  AFGSFIRRCYR-PLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
           A G F+    R P  DV TFN++I  +C    + DA QL  KM +   RPN  T   LI 
Sbjct: 641 ALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILID 700

Query: 68  GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR-LVDQTKDLFMEM 126
              R G M+  + +  +M+    +      PN+  Y  LI G  K + +++    L+ EM
Sbjct: 701 AFCREGRMDDAMLMFSKMLEEGPE------PNLVTYSCLIHGYFKSQSMMESGLKLYNEM 754

Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
            +  I  N +        LCK+  + EA+      + + L P +  YT L+ GYC VG++
Sbjct: 755 LENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRL 814

Query: 179 NVAIALFDSMARKGFMPDVF 198
             A+ L+D+M      PD F
Sbjct: 815 TEAMMLYDNMLLNRLTPDRF 834



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 107/259 (41%), Gaps = 39/259 (15%)

Query: 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVI 162
           YG LI+  C+  + D++ D+FM +  KGI  +                        N V 
Sbjct: 170 YGFLIESYCRKGMFDKSVDIFMHVCVKGIFVSP-----------------------NVVY 206

Query: 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222
                L++ +C+   V+    L  +M  + F      Y  ++N +     VE  +   + 
Sbjct: 207 LLLGSLIDSHCVEVIVDKYGELCSAMREQPFS----VYEFVMNRFMNKGEVEMGLRFHKA 262

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282
           ++  GF              +  TCN  + G+     +    + F  +     +  V  F
Sbjct: 263 LVQGGFGL------------DIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTF 310

Query: 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
           ++LI   CK G  + A  LF+ ++   +  D++ Y+ILI  L K G+++    LLL   +
Sbjct: 311 STLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALD 370

Query: 343 NGCALDVDTFNTLMISFLQ 361
            G  LDV  F++ M ++++
Sbjct: 371 KGIKLDVVGFSSAMDAYVK 389


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 152/327 (46%), Gaps = 45/327 (13%)

Query: 18  CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
           C  P +   FN L+  FC EG IR A  +   +  +G RP+V + +TL+ G  + G+++ 
Sbjct: 130 CGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDE 189

Query: 78  TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137
             +L   M        G+ +P+V+ +  LI+GLCK+  +D   +LF EM B G+  N + 
Sbjct: 190 GFRLKSVM-----QASGV-QPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGV- 242

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
                                     T+T L++G+C  G+V++A+ ++  M  +  +PD+
Sbjct: 243 --------------------------TFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDL 276

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
            +Y+ LI G CK  ++++  ++  EM + G K            P+  T    IDG CK 
Sbjct: 277 ITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLK------------PDKITYTTLIDGNCKE 324

Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
           G +    E    +   N  L    + +LI G C+ G    A ++  ++    L  ++  Y
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384

Query: 318 NILIHALGKEGQIKKENYLLLSMEENG 344
            ++I+   K+G +   + LL  M+  G
Sbjct: 385 TMIINEFCKKGDVWTGSKLLKEMQRXG 411



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 27  FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
           F+ LI  +   G +RDA +  +       R    TC  +I  L +     L    ++E +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESL 128

Query: 87  NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---C 138
                    Y  +++ +  L+   CK+  +   + +F  +   G+       NTL+    
Sbjct: 129 ECG------YPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYI 182

Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
           K   L E  RL  +M   G+ P ++T++ L+NG C   K++ A  LFD M   G +P+  
Sbjct: 183 KIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGV 242

Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258
           +++ LI+G+CKN  V+ AM + R+M+              +++P+  T N  I GLCK G
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYRQMLSQ------------SLLPDLITYNTLIYGLCKKG 290

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
            + +  +L   + +   +     + +LI G CK G  E A E   ++  +N+  D  AY 
Sbjct: 291 DLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYT 350

Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
            LI  L +EG+      +L  M   G   ++ T+  ++  F +K
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 14/211 (6%)

Query: 26  TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
           T + LI G C E  + DA++L  +M   G  PN  T  TLI G  + G ++L ++++++M
Sbjct: 208 THSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQM 267

Query: 86  VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------- 137
           ++          P++  Y +LI GLCK   + Q  DL  EM  KG+  + +         
Sbjct: 268 LSQS------LLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGN 321

Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
           CK+  L  A    + M++  +      YT L++G C  G+   A  +   M   G  P++
Sbjct: 322 CKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEI 381

Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
            +Y+++IN +CK  +V     + +EM   G+
Sbjct: 382 GTYTMIINEFCKKGDVWTGSKLLKEMQRXGY 412



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 16/183 (8%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N VTF +LI G C  G +  A ++ ++M +    P++ T +TLI GL + G++     L 
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLI 299

Query: 83  QEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
            EM + G+       KP+   Y +LIDG CK+  ++   +    M  + I  +       
Sbjct: 300 DEMSMKGL-------KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTAL 352

Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
              LC++ + V+A ++L  M+  GL P I TYT ++N +C  G V     L   M R G+
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGY 412

Query: 194 MPD 196
            P+
Sbjct: 413 XPN 415


>gi|242049502|ref|XP_002462495.1| hypothetical protein SORBIDRAFT_02g026770 [Sorghum bicolor]
 gi|241925872|gb|EER99016.1| hypothetical protein SORBIDRAFT_02g026770 [Sorghum bicolor]
          Length = 294

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 134/288 (46%), Gaps = 46/288 (15%)

Query: 50  MATFG--CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107
           MA  G  C PNV    T+I G  + GN+N    L  EMV       GI  PN+  Y S++
Sbjct: 1   MAETGAVCSPNVVAYSTVIDGFFKEGNVNKACDLFNEMVQR-----GI-SPNLVTYNSVV 54

Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINANTL---------------------------LCKK 140
             LCK R VD+ + +   M  KG+  + +                           LCK 
Sbjct: 55  HALCKARAVDRAEAILRPMVGKGVRPDRMTYNNLIYVDSSMGQWKEAVRSCSIINNLCKV 114

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
            ++VEA  + +L +  G++P +  Y  L++GYCLV K+  A+ +FD+M   G  P+V +Y
Sbjct: 115 GRVVEAQDIFDLTVSIGVHPNVMVYNTLMDGYCLVHKMKKALKVFDAMVSVGIEPNVVTY 174

Query: 201 SVLINGYCKNFNVEEAMNVSREMILNGF-----------KKIFNEMKLCNVVPETFTCNI 249
           S L+NGYCK   + E +++  EM+  G            K +F  +    +VP   T N+
Sbjct: 175 STLVNGYCKIGRINEGLSLFTEMLHKGIEPSAISRVKEAKGLFASISGSGLVPSVVTYNV 234

Query: 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
            +  L K G V E   +F  +E S C+    + N +++   K  + ++
Sbjct: 235 MMTNLIKEGLVEEADRMFSFMENSGCDPNSRLLNHVVKDLMKIPLRDL 282



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 127/286 (44%), Gaps = 55/286 (19%)

Query: 89  MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKK 140
           M + G +  PNV  Y ++IDG  K+  V++  DLF EM  +GI+ N +        LCK 
Sbjct: 1   MAETGAVCSPNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKA 60

Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPL-------------------LNGYCLVGKVNVA 181
             +  A  +L  M+ +G+ P   TY  L                   +N  C VG+V  A
Sbjct: 61  RAVDRAEAILRPMVGKGVRPDRMTYNNLIYVDSSMGQWKEAVRSCSIINNLCKVGRVVEA 120

Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
             +FD     G  P+V  Y+ L++GYC    +++A+            K+F+ M    + 
Sbjct: 121 QDIFDLTVSIGVHPNVMVYNTLMDGYCLVHKMKKAL------------KVFDAMVSVGIE 168

Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI--AS 299
           P   T +  ++G CK G + E + LF  +              L +G     I  +  A 
Sbjct: 169 PNVVTYSTLVNGYCKIGRINEGLSLFTEM--------------LHKGIEPSAISRVKEAK 214

Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345
            LF  +S   LV  VV YN+++  L KEG +++ + +   ME +GC
Sbjct: 215 GLFASISGSGLVPSVVTYNVMMTNLIKEGLVEEADRMFSFMENSGC 260



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 17/132 (12%)

Query: 23  NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
           N + +N+L+ G+C+   ++ A ++   M + G  PNV T  TL+ G  + G +N  L L 
Sbjct: 135 NVMVYNTLMDGYCLVHKMKKALKVFDAMVSVGIEPNVVTYSTLVNGYCKIGRINEGLSLF 194

Query: 83  QEMVN-------------GMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFME 125
            EM++               G F  I      P+V  Y  ++  L K+ LV++   +F  
Sbjct: 195 TEMLHKGIEPSAISRVKEAKGLFASISGSGLVPSVVTYNVMMTNLIKEGLVEEADRMFSF 254

Query: 126 MKDKGINANTLL 137
           M++ G + N+ L
Sbjct: 255 MENSGCDPNSRL 266



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 32/200 (16%)

Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
           +P +  Y+ +++G+   G VN A  LF+ M ++G  P++ +Y+ +++  CK   V+ A  
Sbjct: 9   SPNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKARAVDRAEA 68

Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCN--IFIDGLCKNGHVLEVMELFPTLEISNCE 276
           + R M+  G +            P+  T N  I++D     G   E         + +C 
Sbjct: 69  ILRPMVGKGVR------------PDRMTYNNLIYVDS--SMGQWKEA--------VRSC- 105

Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
                  S+I   CK G    A ++F+      +  +V+ YN L+       ++KK   +
Sbjct: 106 -------SIINNLCKVGRVVEAQDIFDLTVSIGVHPNVMVYNTLMDGYCLVHKMKKALKV 158

Query: 337 LLSMEENGCALDVDTFNTLM 356
             +M   G   +V T++TL+
Sbjct: 159 FDAMVSVGIEPNVVTYSTLV 178



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%)

Query: 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334
           C   V  ++++I G  K G    A +LFN++  + +  ++V YN ++HAL K   + +  
Sbjct: 8   CSPNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKARAVDRAE 67

Query: 335 YLLLSMEENGCALDVDTFNTLM 356
            +L  M   G   D  T+N L+
Sbjct: 68  AILRPMVGKGVRPDRMTYNNLI 89


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.326    0.141    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,278,967,940
Number of Sequences: 23463169
Number of extensions: 212009501
Number of successful extensions: 775361
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5013
Number of HSP's successfully gapped in prelim test: 5306
Number of HSP's that attempted gapping in prelim test: 586742
Number of HSP's gapped (non-prelim): 63075
length of query: 363
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 219
effective length of database: 8,980,499,031
effective search space: 1966729287789
effective search space used: 1966729287789
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)