BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044256
         (363 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AWD|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis
 pdb|2AWD|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis
 pdb|2F02|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis In
           Complex With Atp
 pdb|2F02|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis In
           Complex With Atp
          Length = 323

 Score = 31.2 bits (69), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 13/73 (17%)

Query: 224 ILNGFKKIF--NEMKLCNVVPETFTC-------NIFIDGLCKNGHVLEVMELFPTLEISN 274
           +L GF   F  NE+K  N+ P+ FT        +I I      G+  E++E  PT+    
Sbjct: 60  VLGGFHGAFIANELKKANI-PQAFTSIKEETRDSIAI---LHEGNQTEILEAGPTVSPEE 115

Query: 275 CELFVEIFNSLIR 287
              F+E F+ LI+
Sbjct: 116 ISNFLENFDQLIK 128


>pdb|2R4G|A Chain A, The High Resolution Structure Of The Rna-Binding Domain Of
           Telomerase
          Length = 267

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 11  FGSFIRRCYRPLNDVTFNSLIKGFC-MEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
           F  F  +  +  +++ FN L+K FC +  N +     VK++     + N  +C+ L   L
Sbjct: 55  FLEFTEKIVQNFHNINFNYLLKKFCKLPENYQSLKSQVKQIVQSENKANQQSCENLFNSL 114

Query: 70  RRT 72
             T
Sbjct: 115 YDT 117


>pdb|3IH5|A Chain A, Crystal Structure Of Electron Transfer Flavoprotein Alpha-
           Subunit From Bacteroides Thetaiotaomicron
 pdb|3IH5|B Chain B, Crystal Structure Of Electron Transfer Flavoprotein Alpha-
           Subunit From Bacteroides Thetaiotaomicron
 pdb|3IH5|C Chain C, Crystal Structure Of Electron Transfer Flavoprotein Alpha-
           Subunit From Bacteroides Thetaiotaomicron
 pdb|3IH5|D Chain D, Crystal Structure Of Electron Transfer Flavoprotein Alpha-
           Subunit From Bacteroides Thetaiotaomicron
          Length = 217

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC---KNLVADVV 315
           HV +   L+P   + +  + V +F       C  G   I  +L  ++S      L AD  
Sbjct: 64  HVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLXGATVIGRDLGPRVSSALTSGLTADCT 123

Query: 316 AYNILIHALGKEGQIKK 332
           +  I  H   KEG++ K
Sbjct: 124 SLEIGDHEDKKEGKVYK 140


>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
           Calpastatin
 pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
          Length = 714

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 7/43 (16%)

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIF-------IDGLCKNG 258
           M  + F + ++ +++CN+ P+T TC+ +       +DG  + G
Sbjct: 326 MSFSDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGNWRRG 368


>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
          Length = 700

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 7/43 (16%)

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIF-------IDGLCKNG 258
           M  + F + ++ +++CN+ P+T TC+ +       +DG  + G
Sbjct: 326 MSFSDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGNWRRG 368


>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
           Thr
          Length = 700

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 7/43 (16%)

Query: 223 MILNGFKKIFNEMKLCNVVPETFTCNIF-------IDGLCKNG 258
           M  + F + ++ +++CN+ P+T TC+ +       +DG  + G
Sbjct: 326 MSFSDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGNWRRG 368


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,164,999
Number of Sequences: 62578
Number of extensions: 408192
Number of successful extensions: 1128
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1124
Number of HSP's gapped (non-prelim): 10
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)