BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044256
(363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 206 bits (525), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 135/424 (31%), Positives = 215/424 (50%), Gaps = 79/424 (18%)
Query: 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
VLG +M G Y P + TFN+LIKG +EG + +A LV +M GC+P+V T +
Sbjct: 145 VLGKVMKLG------YEP-DTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYN 197
Query: 64 TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
+++ G+ R+G+ +L L L ++M K +VF Y ++ID LC+D +D LF
Sbjct: 198 SIVNGICRSGDTSLALDLLRKMEERN------VKADVFTYSTIIDSLCRDGCIDAAISLF 251
Query: 124 MEMKDKGINANTL--------LCK-----------------------------------K 140
EM+ KGI ++ + LCK +
Sbjct: 252 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311
Query: 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY 200
KL EAN L + M+ RG++P I TY L++GYC+ +++ A + D M R PD+ ++
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371
Query: 201 SVLINGYCKNFNVEEAMNVSR--------------EMILNGF---------KKIFNEMKL 237
+ LI GYC V++ M V R +++ GF +++F EM
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS 431
Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
V+P+ T I +DGLC NG + + +E+F L+ S +L + ++ ++I G CK G E
Sbjct: 432 HGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVED 491
Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357
A LF L CK + +V+ Y ++I L K+G + + N LL MEE+G A + T+NTL+
Sbjct: 492 AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIR 551
Query: 358 SFLQ 361
+ L+
Sbjct: 552 AHLR 555
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 160/355 (45%), Gaps = 52/355 (14%)
Query: 8 LMAFGSFIRRCYRPLNDVT-----FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
L SF C R + ++ F ++ ++ DA L ++M P++
Sbjct: 32 LCTISSFFSSCERDFSSISNGNVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDF 91
Query: 63 DTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
+ + RT NL L +++ +NG+ N++ +I+ C+
Sbjct: 92 SRFFSAIARTKQFNLVLDFCKQLELNGIAH-------NIYTLNIMINCFCR--------- 135
Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
C KT A +L +M+ G P T+ L+ G L GKV+ A
Sbjct: 136 ----------------CCKTCF--AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177
Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
+ L D M G PDV +Y+ ++NG C++ + A+++ R+M E + NV
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKM----------EER--NVK 225
Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
+ FT + ID LC++G + + LF +E + V +NSL+RG CK G + + L
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 285
Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
+ + +V +V+ +N+L+ KEG++++ N L M G + ++ T+NTLM
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLM 340
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 14/221 (6%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
VTF SLIKG+CM + D ++ + ++ G N T L+ G ++G + L +L QE
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGINANTL---- 136
MV+ G+ P+V YG L+DGLC + +++ ++F +++ D GI T
Sbjct: 429 MVSH-----GVL-PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
+CK K+ +A L + +G+ P + TYT +++G C G ++ A L M G P+
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
+Y+ LI + ++ ++ + + EM GF + +K+
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 21/280 (7%)
Query: 91 DFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLLCKKTKLVE 145
DF I NV C+ + D D LF EM ++ + + +
Sbjct: 45 DFSSISNGNV-CFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQ 103
Query: 146 ANRLLELMMQRGLNPV---IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
N +L+ Q LN + I+T ++N +C K A ++ + + G+ PD +++
Sbjct: 104 FNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNT 163
Query: 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
LI G V EA+ + M+ NG + P+ T N ++G+C++G
Sbjct: 164 LIKGLFLEGKVSEAVVLVDRMVENGCQ------------PDVVTYNSIVNGICRSGDTSL 211
Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
++L +E N + V ++++I C+ G + A LF ++ K + + VV YN L+
Sbjct: 212 ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271
Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
L K G+ LL M +V TFN L+ F+++
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
KV A F S + +P N +T+ +I G C +G++ +A+ L++KM G PN T
Sbjct: 488 KVEDAWNLFCSLPCKGVKP-NVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546
Query: 63 DTLITGLRRTGNMNLTLKLHQEM 85
+TLI R G++ + KL +EM
Sbjct: 547 NTLIRAHLRDGDLTASAKLIEEM 569
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 201 bits (510), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 132/427 (30%), Positives = 214/427 (50%), Gaps = 73/427 (17%)
Query: 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
+ ++ A+ + Y+P + TF +LI G + +A LV +M GC+P++
Sbjct: 166 SKRISDAVALVDQMVEMGYKP-DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV 224
Query: 61 TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
T T++ GL + G+++L L L ++M G + +V Y ++IDGLCK + +D
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKMEKGK------IEADVVIYNTIIDGLCKYKHMDDAL 278
Query: 121 DLFMEMKDKGI---------------------NANTLLC--------------------- 138
+LF EM +KGI +A+ LL
Sbjct: 279 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 338
Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
K+ KLVEA +L + M++R ++P IFTY+ L+NG+C+ +++ A +F+ M K P+V
Sbjct: 339 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 398
Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNE 234
+YS LI G+CK VEE M + REM +++GF + +F +
Sbjct: 399 VTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 458
Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
M V P T NI +DGLCKNG + + M +F L+ S E + +N +I G CK G
Sbjct: 459 MVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 518
Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
E ELF LS K + +V+AYN +I ++G ++ + LL M+E+G + T+NT
Sbjct: 519 VEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNT 578
Query: 355 LMISFLQ 361
L+ + L+
Sbjct: 579 LIRARLR 585
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 170/391 (43%), Gaps = 40/391 (10%)
Query: 3 KVLGALMAFGSFIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
KV A+ FG ++ RP V FN L+ L ++M T G ++ T
Sbjct: 63 KVDDAVDLFGDMVKS--RPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYT 120
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
I R ++L L + +M+ +G Y+P++ SL++G C + +
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMK-LG-----YEPDIVTLSSLLNGYCHSKRISDAVA 174
Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
L +M + G +T L K EA L++ M+QRG P + TY ++NG C
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLC 234
Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---- 229
G +++A++L M + DV Y+ +I+G CK ++++A+N+ EM G +
Sbjct: 235 KRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVF 294
Query: 230 -------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
++ ++M + P T + ID K G ++E +L+ +
Sbjct: 295 TYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 354
Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
+ + + ++SLI G C + A +F + K+ +VV Y+ LI K ++
Sbjct: 355 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRV 414
Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
++ L M + G + T+ TL+ F Q
Sbjct: 415 EEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 445
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 136/283 (48%), Gaps = 24/283 (8%)
Query: 92 FGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCK 139
FG + K P++ + L+ + K + L +M+ GI+ + C+
Sbjct: 71 FGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCR 130
Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
+++L A +L MM+ G P I T + LLNGYC +++ A+AL D M G+ PD F+
Sbjct: 131 RSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFT 190
Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
++ LI+G + EA+ + +M+ G + P+ T ++GLCK G
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQ------------PDLVTYGTVVNGLCKRGD 238
Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
+ + L +E E V I+N++I G CK+ + A LF ++ K + DV Y+
Sbjct: 239 IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSS 298
Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
LI L G+ + LL M E +V TF+ L+ +F+++
Sbjct: 299 LISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 341
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N VT+ +LI GF + +A + K+M + G PN+ T + L+ GL + G + + +
Sbjct: 432 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF 491
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
+ + +P+++ Y +I+G+CK V+ +LF + KG++ N +
Sbjct: 492 EYLQRS------TMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMI 545
Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
C+K EA+ LL+ M + G P TY L+ G + L M GF
Sbjct: 546 SGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFA 605
Query: 195 PDVFSYSVLIN 205
D + ++ N
Sbjct: 606 GDASTIGLVTN 616
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
K+ A++ F R P + T+N +I+G C G + D +L ++ G PNV
Sbjct: 483 KLAKAMVVFEYLQRSTMEP-DIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAY 541
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
+T+I+G R G+ ++ M + G + PN Y +LI +D + + +L
Sbjct: 542 NTMISGFCRKGSKEEA----DSLLKKMKEDGPL--PNSGTYNTLIRARLRDGDREASAEL 595
Query: 123 FMEMKDKGINANT 135
EM+ G +
Sbjct: 596 IKEMRSCGFAGDA 608
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 198/409 (48%), Gaps = 73/409 (17%)
Query: 19 YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
Y+P N VTFN+LI G + +A L+ +M GC+P++ T ++ GL + G+ +L
Sbjct: 182 YQP-NTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 79 LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
L +M G +P V Y ++IDGLCK + +D +LF EM+ KGI N +
Sbjct: 241 FNLLNKMEQGK------LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294
Query: 137 ------LC-----------------------------------KKTKLVEANRLLELMMQ 155
LC K+ KLVEA +L + M++
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354
Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
R ++P I TY+ L+NG+C+ +++ A +F+ M K PDV +Y+ LI G+CK VEE
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEE 414
Query: 216 AMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFID 252
M V REM G ++IF EM V P T N +D
Sbjct: 415 GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLD 474
Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
GLCKNG + + M +F L+ S E + +N +I G CK G E +LF LS K +
Sbjct: 475 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKP 534
Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
DVVAYN +I ++G ++ + L M+E+G + +NTL+ + L+
Sbjct: 535 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR 583
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 20/273 (7%)
Query: 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
P++ + L+ + K D L +M++ GI N C++++L A +
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
L MM+ G P I T + LLNGYC +++ A+AL D M G+ P+ +++ LI+G
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
+ EAM + M+ G + P+ T + ++GLCK G L
Sbjct: 199 HNKASEAMALIDRMVAKGCQ------------PDLVTYGVVVNGLCKRGDTDLAFNLLNK 246
Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
+E E V I+N++I G CK+ + A LF ++ K + +VV Y+ LI L G+
Sbjct: 247 MEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 306
Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
+ LL M E DV TF+ L+ +F+++
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKE 339
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 132/426 (30%), Positives = 207/426 (48%), Gaps = 75/426 (17%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
++ A+ + Y+P + VTF +L+ G +A LV++M GC+P++ T
Sbjct: 150 RISEAVALVDQMVEMGYQP-DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 208
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
+I GL + G +L L L +M G + +V Y ++ID LCK R VD +L
Sbjct: 209 GAVINGLCKRGEPDLALNLLNKMEKGK------IEADVVIYSTVIDSLCKYRHVDDALNL 262
Query: 123 FMEMKDKGI---------------------NANTLL----------------------CK 139
F EM +KGI +A+ LL K
Sbjct: 263 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAK 322
Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
+ KL+EA +L + M+QR ++P I TY L+NG+C+ +++ A +F M K +PDV +
Sbjct: 323 EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVT 382
Query: 200 YSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMK 236
Y+ LING+CK V + M + R+M +++GF + +F +M
Sbjct: 383 YNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMV 442
Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
V P T N +DGLCKNG + + M +F L+ S E + +N + G CK G E
Sbjct: 443 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVE 502
Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY-LLLSMEENGCALDVDTFNTL 355
+LF LS K + DV+AYN +I K+G +K+E Y L + M+E+G D T+NTL
Sbjct: 503 DGWDLFCSLSLKGVKPDVIAYNTMISGFCKKG-LKEEAYTLFIKMKEDGPLPDSGTYNTL 561
Query: 356 MISFLQ 361
+ + L+
Sbjct: 562 IRAHLR 567
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 24/294 (8%)
Query: 81 LHQEMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL 136
LH ++ + FG + K P++ + L+ + K + D +M+ G++ N
Sbjct: 42 LHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLY 101
Query: 137 --------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
LC++++L A +L MM+ G P I T LLNG+C +++ A+AL D M
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161
Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
G+ PD +++ L++G ++ EA+ + M++ G + P+ T
Sbjct: 162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQ------------PDLVTYG 209
Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
I+GLCK G + L +E E V I++++I CK+ + A LF ++ K
Sbjct: 210 AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK 269
Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
+ DV Y+ LI L G+ + LL M E +V TFN+L+ +F ++
Sbjct: 270 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKE 323
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 14/191 (7%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N VT+ +LI GF + +A + K+M + G PN+ T +TL+ GL + G + + +
Sbjct: 414 NTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 473
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
+ + +P+++ Y + +G+CK V+ DLF + KG+ + +
Sbjct: 474 EYLQKSK------MEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMI 527
Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
CKK EA L M + G P TY L+ + G + L M F
Sbjct: 528 SGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFA 587
Query: 195 PDVFSYSVLIN 205
D +Y ++ +
Sbjct: 588 GDASTYGLVTD 598
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 188 bits (478), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 204/425 (48%), Gaps = 73/425 (17%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
++ A+ + YRP + +TF +LI G + +A LV +M GC+PN+ T
Sbjct: 170 RISDAVALVDQMVEMGYRP-DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 228
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
++ GL + G+ +L L L +M + +V + ++ID LCK R VD +L
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKME------AAKIEADVVIFNTIIDSLCKYRHVDDALNL 282
Query: 123 FMEMKDKGINANTL--------LC-----------------------------------K 139
F EM+ KGI N + LC K
Sbjct: 283 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342
Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
+ K VEA +L + M++R ++P IFTY L+NG+C+ +++ A +F+ M K PDV +
Sbjct: 343 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVT 402
Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMK 236
Y+ LI G+CK+ VE+ + REM G +K+F +M
Sbjct: 403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
V P+ T +I +DGLC NG + + +E+F ++ S +L + I+ ++I G CK G +
Sbjct: 463 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 522
Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
+LF LS K + +VV YN +I L + +++ LL M+E+G + T+NTL+
Sbjct: 523 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLI 582
Query: 357 ISFLQ 361
+ L+
Sbjct: 583 RAHLR 587
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 143/295 (48%), Gaps = 25/295 (8%)
Query: 81 LHQ-EMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD----KGI 131
LH ++ + +G FGG+ K P++ + L+ + K + D L +M+ G+
Sbjct: 61 LHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGL 120
Query: 132 NANTLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
+L C+++++ A LL MM+ G P I T + LLNGYC +++ A+AL D
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180
Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
M G+ PD +++ LI+G + EA+ + M+ G + P T
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ------------PNLVTY 228
Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
+ ++GLCK G + L +E + E V IFN++I CK+ + A LF ++
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
K + +VV Y+ LI L G+ + LL M E ++ TFN L+ +F+++
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 343
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 159/366 (43%), Gaps = 29/366 (7%)
Query: 3 KVLGALMAFGSFIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
K+ A+ FG ++ RPL V FN L+ L +KM + T
Sbjct: 65 KLDDAIGLFGGMVKS--RPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYT 122
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
+ LI R ++L L L +M+ +G Y+P++ SL++G C + +
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMK-LG-----YEPSIVTLSSLLNGYCHGKRISDAVA 176
Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
L +M + G +T+ L K EA L++ M+QRG P + TY ++NG C
Sbjct: 177 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 236
Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
G ++A+ L + M DV ++ +I+ CK +V++A+N +F
Sbjct: 237 KRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN------------LFK 284
Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
EM+ + P T + I LC G + +L + + FN+LI K G
Sbjct: 285 EMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 344
Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
F A +L++ + +++ D+ YN L++ ++ K + M C DV T+N
Sbjct: 345 KFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYN 404
Query: 354 TLMISF 359
TL+ F
Sbjct: 405 TLIKGF 410
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
VT+N+LIKGFC + D ++L ++M+ G + T TLI GL G+ + K+ ++
Sbjct: 401 VTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 460
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
MV+ G+ P++ Y L+DGLC + +++ ++F M+ I +
Sbjct: 461 MVSD-----GV-PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 514
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
+CK K+ + L + +G+ P + TY +++G C + A AL M G +P+
Sbjct: 515 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 574
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM 223
+Y+ LI + ++ + + + REM
Sbjct: 575 SGTYNTLIRAHLRDGDKAASAELIREM 601
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N VT+N++I G C + +++A L+KKM G PN T +TLI R G+ + +L
Sbjct: 539 NVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELI 598
Query: 83 QEM 85
+EM
Sbjct: 599 REM 601
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 187 bits (476), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 123/425 (28%), Positives = 204/425 (48%), Gaps = 73/425 (17%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
++ A+ + YRP + +TF +LI G + +A LV +M GC+PN+ T
Sbjct: 95 RISDAVALVDQMVEMGYRP-DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 153
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
++ GL + G+++L L +M + +V + ++ID LCK R VD +L
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKME------AAKIEADVVIFNTIIDSLCKYRHVDDALNL 207
Query: 123 FMEMKDKGINANTL--------LC-----------------------------------K 139
F EM+ KGI N + LC K
Sbjct: 208 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 267
Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
+ K VEA +L + M++R ++P IFTY L+NG+C+ +++ A +F+ M K PD+ +
Sbjct: 268 EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDT 327
Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFNEMK 236
Y+ LI G+CK+ VE+ + REM G +K+F +M
Sbjct: 328 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387
Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
V P+ T +I +DGLC NG + + +E+F ++ S +L + I+ ++I G CK G +
Sbjct: 388 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 447
Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
+LF LS K + +VV YN +I L + +++ LL M+E+G D T+NTL+
Sbjct: 448 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLI 507
Query: 357 ISFLQ 361
+ L+
Sbjct: 508 RAHLR 512
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 132/273 (48%), Gaps = 20/273 (7%)
Query: 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
P++F + L+ + K + D L +M+ GI+ N C+++++ A L
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
L MM+ G P I T + LLNGYC +++ A+AL D M G+ PD +++ LI+G
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
+ EA+ + M+ G + P T + ++GLCK G + L
Sbjct: 128 HNKASEAVALVDRMVQRGCQ------------PNLVTYGVVVNGLCKRGDIDLAFNLLNK 175
Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
+E + E V IFN++I CK+ + A LF ++ K + +VV Y+ LI L G+
Sbjct: 176 MEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR 235
Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
+ LL M E ++ TFN L+ +F+++
Sbjct: 236 WSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 268
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 153/349 (43%), Gaps = 27/349 (7%)
Query: 20 RPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
RPL + FN L+ L +KM G N+ T + LI R ++L
Sbjct: 5 RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 64
Query: 79 LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
L L +M+ +G Y+P++ SL++G C + + L +M + G +T+
Sbjct: 65 LALLGKMMK-LG-----YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITF 118
Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
L K EA L++ M+QRG P + TY ++NG C G +++A L + M
Sbjct: 119 TTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA 178
Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
DV ++ +I+ CK +V++A+N +F EM+ + P T +
Sbjct: 179 AKIEADVVIFNTIIDSLCKYRHVDDALN------------LFKEMETKGIRPNVVTYSSL 226
Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
I LC G + +L + + FN+LI K G F A +L + + +++
Sbjct: 227 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286
Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
D+ YN LI+ ++ K + M C D+DT+NTL+ F
Sbjct: 287 DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGF 335
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 16/216 (7%)
Query: 16 RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
+ C+ L+ T+N+LIKGFC + D ++L ++M+ G + T TLI GL G+
Sbjct: 319 KDCFPDLD--TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 376
Query: 76 NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
+ K+ ++MV+ G+ P++ Y L+DGLC + +++ ++F M+ I +
Sbjct: 377 DNAQKVFKQMVSD-----GV-PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 430
Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
+CK K+ + L + +G+ P + TY +++G C + A AL
Sbjct: 431 YIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 490
Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
M G +PD +Y+ LI + ++ + + + REM
Sbjct: 491 MKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 526
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/426 (29%), Positives = 207/426 (48%), Gaps = 73/426 (17%)
Query: 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
+++ A+ G + Y+P + TFN+LI G +A LV +M GC+P++ T
Sbjct: 165 NRISDAVSLVGQMVEMGYQP-DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVT 223
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
++ GL + G+++L L L ++M G +P V Y ++ID LC + V+ +
Sbjct: 224 YGIVVNGLCKRGDIDLALSLLKKMEQGK------IEPGVVIYNTIIDALCNYKNVNDALN 277
Query: 122 LFMEMKDKGINANTL--------LC----------------------------------- 138
LF EM +KGI N + LC
Sbjct: 278 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 337
Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
K+ KLVEA +L + M++R ++P IFTY+ L+NG+C+ +++ A +F+ M K P+V
Sbjct: 338 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 397
Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEM 235
+Y+ LI G+CK V+E M + REM +++GF + +F +M
Sbjct: 398 TYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQM 457
Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
V+P+ T +I +DGLC NG V + +F L+ S E + +N +I G CK G
Sbjct: 458 VSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKV 517
Query: 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355
E +LF LS K + +VV Y ++ ++G ++ + L M+E G D T+NTL
Sbjct: 518 EDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTL 577
Query: 356 MISFLQ 361
+ + L+
Sbjct: 578 IRAHLR 583
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 165/344 (47%), Gaps = 27/344 (7%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
AL F + RP N VT+NSLI+ C G DAS+L+ M PNV T LI
Sbjct: 275 ALNLFTEMDNKGIRP-NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 333
Query: 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
+ G + KL+ EM+ D P++F Y SLI+G C +D+ K +F M
Sbjct: 334 DAFVKEGKLVEAEKLYDEMIKRSID------PDIFTYSSLINGFCMHDRLDEAKHMFELM 387
Query: 127 KDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
K + NTL+ CK ++ E L M QRGL TYT L++G+ +
Sbjct: 388 ISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQAREC 447
Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
+ A +F M G +PD+ +YS+L++G C N VE A+ V F ++
Sbjct: 448 DNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVV------------FEYLQRS 495
Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
+ P+ +T NI I+G+CK G V + +LF +L + + V + +++ G C+ G+ E A
Sbjct: 496 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 555
Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
LF ++ + + D YN LI A ++G L+ M
Sbjct: 556 DALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 135/283 (47%), Gaps = 24/283 (8%)
Query: 92 FGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCK 139
FG + K P++ + L+ + K D L +M++ GI+ N C+
Sbjct: 69 FGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCR 128
Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
+++L A +L MM+ G P I T LLNG+C +++ A++L M G+ PD F+
Sbjct: 129 RSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFT 188
Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
++ LI+G ++ EA+ + M++ G + P+ T I ++GLCK G
Sbjct: 189 FNTLIHGLFRHNRASEAVALVDRMVVKGCQ------------PDLVTYGIVVNGLCKRGD 236
Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
+ + L +E E V I+N++I C + A LF ++ K + +VV YN
Sbjct: 237 IDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296
Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
LI L G+ + LL M E +V TF+ L+ +F+++
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 339
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 23/238 (9%)
Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
KL +A L M++ P I ++ LL+ + K ++ I+L + M G ++++YS
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 202 VLINGYCKNFNVEEAMNVSREM--------------ILNGF---KKIFNEMKLCNVV--- 241
+LIN +C+ + A+ V +M +LNGF +I + + L +
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 242 ---PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
P++FT N I GL ++ E + L + + C+ + + ++ G CK G ++A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
L K+ + VV YN +I AL + L M+ G +V T+N+L+
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 14/191 (7%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N VT+ +LI GF +A + K+M + G P++ T L+ GL G + L +
Sbjct: 430 NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVF 489
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
+ + +P+++ Y +I+G+CK V+ DLF + KG+ N +
Sbjct: 490 EYLQRSK------MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 543
Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
C+K EA+ L M + G P TY L+ + G + L M F+
Sbjct: 544 SGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFV 603
Query: 195 PDVFSYSVLIN 205
D + ++ N
Sbjct: 604 GDASTIGLVTN 614
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 200/453 (44%), Gaps = 96/453 (21%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
K+L A G + Y P + +TF++L+ GFC+EG + +A LV +M RP++ T
Sbjct: 120 KLLFAFSVLGRAWKLGYEP-DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTV 178
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKP----------------------- 98
TLI GL G ++ L L MV G Y P
Sbjct: 179 STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE 238
Query: 99 -----NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC------- 138
+V Y +ID LCKD D LF EM+ KGI A+ + LC
Sbjct: 239 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDD 298
Query: 139 ----------------------------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
K+ KL+EA L M+ RG+ P TY L++
Sbjct: 299 GAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 358
Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI------ 224
G+C ++ A +FD M KG PD+ +YS+LIN YCK V++ M + RE+
Sbjct: 359 GFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIP 418
Query: 225 -----------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
LN K++F EM V P T I +DGLC NG + + +E+F
Sbjct: 419 NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 478
Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
++ S L + I+N +I G C + A LF LS K + DVV YN++I L K+
Sbjct: 479 EKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 538
Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
G + + + L M+E+GC D T+N L+ + L
Sbjct: 539 GSLSEADMLFRKMKEDGCTPDDFTYNILIRAHL 571
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 140/297 (47%), Gaps = 31/297 (10%)
Query: 96 YKPNVFCYGSLIDGLCKDRLVDQTK---DLFMEMKDKG--INANTL---LCKKTKLVEAN 147
Y+P+ + +L++G C + V + D +EMK + + +TL LC K ++ EA
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 195
Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
L++ M++ G P TY P+LN C G +A+ LF M + V YS++I+
Sbjct: 196 VLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSL 255
Query: 208 CKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPET 244
CK+ + ++A+++ EM + G K K+ EM N++P+
Sbjct: 256 CKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV 315
Query: 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
T + ID K G +LE EL+ + +NSLI G CK A+++F+
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375
Query: 305 LSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
+ K D+V Y+ILI++ K ++ L + G + T+NTL++ F Q
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 432
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 23/245 (9%)
Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
C+K KL+ A +L + G P T++ L+NG+CL G+V+ A+AL D M PD+
Sbjct: 116 CRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDL 175
Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------------IFNE 234
+ S LING C V EA+ + M+ GF+ +F +
Sbjct: 176 VTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRK 235
Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
M+ N+ +I ID LCK+G + + LF +E+ + V ++SLI G C G
Sbjct: 236 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295
Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
++ +++ ++ +N++ DVV ++ LI KEG++ + L M G A D T+N+
Sbjct: 296 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 355
Query: 355 LMISF 359
L+ F
Sbjct: 356 LIDGF 360
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 115/221 (52%), Gaps = 14/221 (6%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
VT++ LI +C + D +L +++++ G PN T +TL+ G ++G +N +L QE
Sbjct: 386 VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE 445
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK----GINANTL---- 136
MV+ G+ P+V YG L+DGLC + +++ ++F +M+ GI +
Sbjct: 446 MVSR-----GV-PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 499
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
+C +K+ +A L + +G+ P + TY ++ G C G ++ A LF M G PD
Sbjct: 500 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPD 559
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
F+Y++LI + + ++ + EM + GF + +K+
Sbjct: 560 DFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKM 600
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 14/191 (7%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N +T+N+L+ GFC G + A +L ++M + G P+V T L+ GL G +N L++
Sbjct: 419 NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 478
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
++M G + Y +I G+C VD LF + DKG+ + +
Sbjct: 479 EKMQKSRMTLG------IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 532
Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
LCKK L EA+ L M + G P FTY L+ + + ++ L + M GF
Sbjct: 533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFS 592
Query: 195 PDVFSYSVLIN 205
D + ++I+
Sbjct: 593 ADSSTIKMVID 603
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 12/200 (6%)
Query: 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216
G+ ++T T ++N YC K+ A ++ + G+ PD ++S L+NG+C V EA
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 159
Query: 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
+ + M+ EMK P+ T + I+GLC G V E + L + +
Sbjct: 160 VALVDRMV---------EMK---QRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQ 207
Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
+ ++ CK G +A +LF K+ +N+ A VV Y+I+I +L K+G L
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267
Query: 337 LLSMEENGCALDVDTFNTLM 356
ME G DV T+++L+
Sbjct: 268 FNEMEMKGIKADVVTYSSLI 287
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 201/409 (49%), Gaps = 73/409 (17%)
Query: 19 YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
Y+P N VTFN+LI G + +A L+ +M GC+P++ T T++ GL + G+++L
Sbjct: 181 YQP-NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 79 LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
L L ++M G + +V Y ++ID LC + V+ +LF EM +KGI N +
Sbjct: 240 LSLLKKMEKGK------IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 293
Query: 137 ------LC-----------------------------------KKTKLVEANRLLELMMQ 155
LC K+ KLVEA +L + M++
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 353
Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
R ++P IFTY+ L+NG+C+ +++ A +F+ M K P+V +Y+ LI G+CK VEE
Sbjct: 354 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEE 413
Query: 216 AMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFID 252
M + REM G +KIF +M V P+ T +I +D
Sbjct: 414 GMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLD 473
Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
GLCK G + + + +F L+ S E + +N +I G CK G E +LF LS K +
Sbjct: 474 GLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 533
Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
+V+ Y +I ++G ++ + L M+E+G + T+NTL+ + L+
Sbjct: 534 NVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 582
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 170/393 (43%), Gaps = 44/393 (11%)
Query: 3 KVLGALMAFGSFIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
K+ A+ FG ++ RPL V FN L+ L ++M ++ +
Sbjct: 60 KLDDAVDLFGEMVQS--RPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 117
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR------- 114
+ LI R + L L + +M+ +G Y+P++ SL++G C +
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMK-LG-----YEPDIVTLSSLLNGYCHGKRISEAVA 171
Query: 115 LVDQTKDLFMEMKDKGINANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
LVDQ ME + + NTL L K EA L++ M+ RG P +FTY ++NG
Sbjct: 172 LVDQM--FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNG 229
Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-- 229
C G +++A++L M + DV Y+ +I+ C NV +A+N+ EM G +
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 289
Query: 230 ---------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
++ ++M + P T + ID K G ++E +L+
Sbjct: 290 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349
Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
+ + + + ++SLI G C + A +F + K+ +VV YN LI K
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409
Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
++++ L M + G + T+NTL+ Q
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 12/225 (5%)
Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
C++++L A +L MM+ G P I T + LLNGYC +++ A+AL D M + P+
Sbjct: 126 CRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNT 185
Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
+++ LI+G + EA+ + M+ G + P+ FT ++GLCK
Sbjct: 186 VTFNTLIHGLFLHNKASEAVALIDRMVARGCQ------------PDLFTYGTVVNGLCKR 233
Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
G + + L +E E V I+ ++I C + A LF ++ K + +VV Y
Sbjct: 234 GDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 293
Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
N LI L G+ + LL M E +V TF+ L+ +F+++
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 338
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 37/220 (16%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N VT+N+LIKGFC + + +L ++M+ G N T +TLI GL + G+ ++ K+
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453
Query: 83 QEMV---------------NGMGDFGGIYK--------------PNVFCYGSLIDGLCKD 113
++MV +G+ +G + K P+++ Y +I+G+CK
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA 513
Query: 114 RLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTY 165
V+ DLF + KG+ N ++ C+K EA+ L M + G P TY
Sbjct: 514 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTY 573
Query: 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
L+ G + L M GF+ D + S++IN
Sbjct: 574 NTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 197/415 (47%), Gaps = 73/415 (17%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
++ A+ + YRP + +TF +LI G + +A LV +M GC+PN+ T
Sbjct: 170 RISDAVALVDQMVEMGYRP-DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 228
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
++ GL + G+++L L +M + NV Y ++ID LCK R D +L
Sbjct: 229 GVVVNGLCKRGDIDLAFNLLNKME------AAKIEANVVIYSTVIDSLCKYRHEDDALNL 282
Query: 123 FMEMKDKGINANTL--------LC-----------------------------------K 139
F EM++KG+ N + LC K
Sbjct: 283 FTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK 342
Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
+ KLVEA +L + M++R ++P IFTY+ L+NG+C+ +++ A +F+ M K P+V +
Sbjct: 343 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 402
Query: 200 YSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEMK 236
Y+ LING+CK ++E + + REM +++GF + +F +M
Sbjct: 403 YNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 462
Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
V P T N +DGLCKNG + + M +F L+ S E + +N +I G CK G E
Sbjct: 463 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 522
Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
+LF LS K + DV+ YN +I ++G ++ + L M E+G D T
Sbjct: 523 DGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 169/363 (46%), Gaps = 27/363 (7%)
Query: 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
S++ AL G ++ Y P + VT +SL+ G+C I DA LV +M G RP+ T
Sbjct: 134 SQISLALALLGKMMKLGYEP-SIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 192
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
TLI GL + + L MV +PN+ YG +++GLCK +D +
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRGC------QPNLVTYGVVVNGLCKRGDIDLAFN 246
Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
L +M+ I AN + LCK +A L M +G+ P + TY+ L++ C
Sbjct: 247 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 306
Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
+ + A L M + P+V +++ LI+ + K + EA +K+++
Sbjct: 307 NYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEA------------EKLYD 354
Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
EM ++ P+ FT + I+G C + + E +F + +C V +N+LI G CK
Sbjct: 355 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAK 414
Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
+ ELF ++S + LV + V Y LIH + + M +G ++ T+N
Sbjct: 415 RIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYN 474
Query: 354 TLM 356
TL+
Sbjct: 475 TLL 477
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 169/391 (43%), Gaps = 40/391 (10%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
K+ A+ FG ++ RPL + FN L+ L +KM G N+ T
Sbjct: 65 KLDDAIGLFGGMVKS--RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYT 122
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
+ LI R ++L L L +M+ +G Y+P++ SL++G C + +
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMK-LG-----YEPSIVTLSSLLNGYCHGKRISDAVA 176
Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
L +M + G +T+ L K EA L++ M+QRG P + TY ++NG C
Sbjct: 177 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 236
Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK---- 229
G +++A L + M +V YS +I+ CK + ++A+N+ EM G +
Sbjct: 237 KRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVI 296
Query: 230 -------------------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
++ ++M + P T N ID K G ++E +L+ +
Sbjct: 297 TYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM 356
Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
+ + + ++SLI G C + A +F + K+ +VV YN LI+ K +I
Sbjct: 357 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRI 416
Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
+ L M + G + T+ TL+ F Q
Sbjct: 417 DEGVELFREMSQRGLVGNTVTYTTLIHGFFQ 447
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 143/295 (48%), Gaps = 25/295 (8%)
Query: 81 LHQ-EMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
LH ++ + +G FGG+ K P++F + L+ + K + D L +M+ GI+ N
Sbjct: 61 LHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNL 120
Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
C+++++ A LL MM+ G P I T + LLNGYC +++ A+AL D
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180
Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
M G+ PD +++ LI+G + EA+ + M+ G + P T
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ------------PNLVTY 228
Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
+ ++GLCK G + L +E + E V I++++I CK+ + A LF ++
Sbjct: 229 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 288
Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
K + +V+ Y+ LI L + + LL M E +V TFN L+ +F+++
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKE 343
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 182/369 (49%), Gaps = 38/369 (10%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
AL G ++ Y P + VT SL+ GFC + DA LV KM G +P++ + +I
Sbjct: 139 ALSILGKMLKLGYEP-DRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAII 197
Query: 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
L +T +N +E+ + GI +PNV Y +L++GLC L +M
Sbjct: 198 DSLCKTKRVNDAFDFFKEI-----ERKGI-RPNVVTYTALVNGLCNSSRWSDAARLLSDM 251
Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
K I N + K K++EA L E M++ ++P I TY+ L+NG CL ++
Sbjct: 252 IKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI 311
Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
+ A +FD M KG + DV SY+ LING+CK VE+ M + REM +
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371
Query: 225 LNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
+ GF ++ F++M + P+ +T NI + GLC NG + + + +F ++
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431
Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
+L + + ++IRG CK G E A LF LS K L D+V Y ++ L +G + +
Sbjct: 432 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 491
Query: 336 LLLSMEENG 344
L M++ G
Sbjct: 492 LYTKMKQEG 500
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 156/335 (46%), Gaps = 46/335 (13%)
Query: 23 NDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
ND+ TFN +I FC + A ++ KM G P+ T +L+ G R ++ + L
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177
Query: 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
+MV + G YKP++ Y ++ID LCK + V+ D F E++ KGI
Sbjct: 178 VDKMV----EIG--YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIR--------- 222
Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
P + TYT L+NG C + + A L M +K P+V +YS
Sbjct: 223 ------------------PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 264
Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
L++ + KN V EA K++F EM ++ P+ T + I+GLC + +
Sbjct: 265 ALLDAFVKNGKVLEA------------KELFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312
Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
E ++F + C V +N+LI G CK E +LF ++S + LV++ V YN LI
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372
Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
+ G + K M+ G + D+ T+N L+
Sbjct: 373 QGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILL 407
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 15/236 (6%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
KVL A F +R P + VT++SLI G C+ I +A+Q+ M + GC +V +
Sbjct: 275 KVLEAKELFEEMVRMSIDP-DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSY 333
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
+TLI G + + +KL +EM G+ N Y +LI G + VD+ ++
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQR-----GLV-SNTVTYNTLIQGFFQAGDVDKAQEF 387
Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
F +M GI+ + LC +L +A + E M +R ++ I TYT ++ G C
Sbjct: 388 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 447
Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
GKV A +LF S++ KG PD+ +Y+ +++G C + E + +M G K
Sbjct: 448 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMK 503
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N VT+N+LI+GF G++ A + +M FG P++ T + L+ GL G + L +
Sbjct: 364 NTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIF 423
Query: 83 QEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLCKD 113
++M + GM G + KP++ Y +++ GLC
Sbjct: 424 EDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK 483
Query: 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIF 163
L+ + + L+ +MK +G+ N + + L++ M+ G P +
Sbjct: 484 GLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLL 533
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 125/372 (33%), Positives = 186/372 (50%), Gaps = 47/372 (12%)
Query: 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
V+G +M FG Y P + VT +SLI GFC + DA LV KM G RP+V +
Sbjct: 126 VVGKMMKFG------YEP-DVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 178
Query: 64 TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
T+I G + G +N ++L M + G+ + + Y SL+ GLC L
Sbjct: 179 TIIDGSCKIGLVNDAVELFDRM-----ERDGV-RADAVTYNSLVAGLCCSGRWSDAARLM 232
Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
+M + I N + K+ K EA +L E M +R ++P +FTY L+NG C+
Sbjct: 233 RDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMH 292
Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------------ 223
G+V+ A + D M KG +PDV +Y+ LING+CK+ V+E + REM
Sbjct: 293 GRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITY 352
Query: 224 --ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
I+ G+ ++IF+ M + P T +I + GLC N V + + LF ++
Sbjct: 353 NTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQK 409
Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
S EL + +N +I G CK G E A +LF LSCK L DVV+Y +I ++ Q K
Sbjct: 410 SEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDK 469
Query: 333 ENYLLLSMEENG 344
+ L M+E+G
Sbjct: 470 SDLLYRKMQEDG 481
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 151/332 (45%), Gaps = 28/332 (8%)
Query: 39 NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYK 97
N+ + L KM P++ +++ + ++ N +L + L M V G+G
Sbjct: 49 NLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGH------ 102
Query: 98 PNVFCYGSLIDGLCK-DRLVDQTKDLFMEMK----DKGINANTLL---CKKTKLVEANRL 149
+++ Y +I+ LC+ R V + MK + ++L+ C+ ++ +A L
Sbjct: 103 -DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDL 161
Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
+ M + G P + Y +++G C +G VN A+ LFD M R G D +Y+ L+ G C
Sbjct: 162 VSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCC 221
Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
+ +A + R+M++ ++VP T ID K G E M+L+
Sbjct: 222 SGRWSDAARLMRDMVMR------------DIVPNVITFTAVIDVFVKEGKFSEAMKLYEE 269
Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
+ + V +NSLI G C G + A ++ + + K + DVV YN LI+ K +
Sbjct: 270 MTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKR 329
Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
+ + L M + G D T+NT++ + Q
Sbjct: 330 VDEGTKLFREMAQRGLVGDTITYNTIIQGYFQ 361
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 20/274 (7%)
Query: 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
P++ + ++ + K + D LF M+ GI + LC+ ++ V A +
Sbjct: 67 PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126
Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
+ MM+ G P + T + L+NG+C +V AI L M GF PDV Y+ +I+G CK
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 186
Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
V +A+ ++F+ M+ V + T N + GLC +G + L
Sbjct: 187 IGLVNDAV------------ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRD 234
Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
+ + + V F ++I K G F A +L+ +++ + + DV YN LI+ L G+
Sbjct: 235 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGR 294
Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
+ + +L M GC DV T+NTL+ F + +
Sbjct: 295 VDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSK 328
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 37/224 (16%)
Query: 7 ALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
A+ + RRC P DV T+NSLI G CM G + +A Q++ M T GC P+V T +TL
Sbjct: 263 AMKLYEEMTRRCVDP--DVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTL 320
Query: 66 ITGLRRTGNMNLTLKLHQEMVNG--MGD-------FGGIY-----------------KPN 99
I G ++ ++ KL +EM +GD G + +PN
Sbjct: 321 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPN 380
Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLE 151
+ Y L+ GLC + V++ LF M+ I + +CK + +A L
Sbjct: 381 IRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFR 440
Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
+ +GL P + +YT +++G+C + + + L+ M G +P
Sbjct: 441 SLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 12/210 (5%)
Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
M+Q P I ++ +L+ ++ I+LF M G D++SY+++IN C+
Sbjct: 60 MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 119
Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
A++V +M+ G++ P+ T + I+G C+ V + ++L +E
Sbjct: 120 FVIALSVVGKMMKFGYE------------PDVVTVSSLINGFCQGNRVFDAIDLVSKMEE 167
Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
V I+N++I G CK G+ A ELF+++ + AD V YN L+ L G+
Sbjct: 168 MGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSD 227
Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQK 362
L+ M +V TF ++ F+++
Sbjct: 228 AARLMRDMVMRDIVPNVITFTAVIDVFVKE 257
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 136/449 (30%), Positives = 202/449 (44%), Gaps = 96/449 (21%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
A G ++ Y P + V FN+L+ G C+E + +A +LV +M G +P + T +TL+
Sbjct: 142 AFSTMGKIMKLGYEP-DTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLV 200
Query: 67 TGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKP--NVFC--------------------- 102
GL G ++ + L MV G Y P NV C
Sbjct: 201 NGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 260
Query: 103 -----YGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--------------- 137
Y +IDGLCKD +D +LF EM+ KG A NTL+
Sbjct: 261 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKL 320
Query: 138 -----------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
K+ KL EA++LL+ MMQRG+ P TY L++G+C
Sbjct: 321 LRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380
Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------ 228
++ AI + D M KG PD+ ++++LINGYCK +++ + + REM L G
Sbjct: 381 ENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVT 440
Query: 229 -----------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
KK+F EM V P+ + I +DGLC NG + + +E+F +E
Sbjct: 441 YNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIE 500
Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
S EL + I+ +I G C + A +LF L K + D AYNI+I L ++ +
Sbjct: 501 KSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLS 560
Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFL 360
K + L M E G A D T+N L+ + L
Sbjct: 561 KADILFRKMTEEGHAPDELTYNILIRAHL 589
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 157/326 (48%), Gaps = 26/326 (7%)
Query: 42 DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
DA L + M P V + L + + +T L L L ++M + GI +++
Sbjct: 71 DAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQM-----ESKGIAH-SIY 124
Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
+I+ C+ R + ++ G +T+ LC + ++ EA L++ M
Sbjct: 125 TLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRM 184
Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
++ G P + T L+NG CL GKV+ A+ L D M GF P+ +Y ++N CK+
Sbjct: 185 VEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQT 244
Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
AM + R+M + N+ + +I IDGLCK+G + LF +EI
Sbjct: 245 ALAMELLRKM------------EERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK 292
Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
+ + +N+LI G C G ++ ++L + + + +VV +++LI + KEG++++
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREA 352
Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
+ LL M + G A + T+N+L+ F
Sbjct: 353 DQLLKEMMQRGIAPNTITYNSLIDGF 378
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 14/221 (6%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
+TFN LI G+C I D +L ++M+ G N T +TL+ G ++G + + KL QE
Sbjct: 404 MTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQE 463
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK------DKGINANTL-- 136
MV+ +P++ Y L+DGLC + +++ ++F +++ D GI +
Sbjct: 464 MVSRR------VRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHG 517
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
+C +K+ +A L + +G+ Y +++ C ++ A LF M +G PD
Sbjct: 518 MCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPD 577
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
+Y++LI + + + A + EM +GF + +K+
Sbjct: 578 ELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKM 618
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N VT+N+L++GFC G + A +L ++M + RP++ + L+ GL G + L++
Sbjct: 437 NTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEI- 495
Query: 83 QEMVNGMGDFGGIYKP----NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN---- 134
FG I K ++ Y +I G+C VD DLF + KG+ +
Sbjct: 496 ---------FGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAY 546
Query: 135 ----TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
+ LC+K L +A+ L M + G P TY L+ + A L + M
Sbjct: 547 NIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKS 606
Query: 191 KGFMPDVFSYSVLIN 205
GF DV + ++IN
Sbjct: 607 SGFPADVSTVKMVIN 621
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 23/241 (9%)
Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
K +A L M+Q P + + L + + + +AL M KG +++ S
Sbjct: 68 KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127
Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKK---IFN--------EMKLCNVV--------- 241
++IN +C+ + A + +++ G++ IFN E ++ +
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187
Query: 242 ---PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
P T N ++GLC NG V + + L + + + + ++ CK G +A
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247
Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358
EL K+ +N+ D V Y+I+I L K+G + L ME G D+ T+NTL+
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGG 307
Query: 359 F 359
F
Sbjct: 308 F 308
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 181 bits (458), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 199/449 (44%), Gaps = 96/449 (21%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
A A G I+ Y P N +TF++LI G C+EG + +A +LV +M G +P++ T +TL+
Sbjct: 142 AFSAMGKIIKLGYEP-NTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLV 200
Query: 67 TGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKP--NVFC--------------------- 102
GL +G + L +MV G Y P NV C
Sbjct: 201 NGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 260
Query: 103 -----YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------------------- 136
Y +IDGLCK +D +LF EM+ KGI N +
Sbjct: 261 LDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKL 320
Query: 137 ----------------------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
K+ KL EA L + M+ RG+ P TYT L++G+C
Sbjct: 321 LRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK 380
Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------ 228
++ A + D M KG P++ ++++LINGYCK +++ + + R+M L G
Sbjct: 381 ENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVT 440
Query: 229 -----------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
K++F EM V P T I +DGLC NG + +E+F +E
Sbjct: 441 YNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIE 500
Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
S EL + I+N +I G C + A +LF L K + V YNI+I L K+G +
Sbjct: 501 KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLS 560
Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFL 360
+ L MEE+G A D T+N L+ + L
Sbjct: 561 EAELLFRKMEEDGHAPDGWTYNILIRAHL 589
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Query: 42 DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101
DA L + M P V L + + +T +L L L ++M + GI N++
Sbjct: 71 DAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM-----ELKGIAH-NLY 124
Query: 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELM 153
+I+ C+ R + ++ G NT+ LC + ++ EA L++ M
Sbjct: 125 TLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 184
Query: 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213
++ G P + T L+NG CL GK A+ L D M G P+ +Y ++N CK+
Sbjct: 185 VEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQT 244
Query: 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
AM + R+M + N+ + +I IDGLCK+G + LF +E+
Sbjct: 245 ALAMELLRKM------------EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMK 292
Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
+ +N LI G C G ++ ++L + + + +VV +++LI + KEG++++
Sbjct: 293 GITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREA 352
Query: 334 NYLLLSMEENGCALDVDTFNTLMISF 359
L M G A D T+ +L+ F
Sbjct: 353 EELHKEMIHRGIAPDTITYTSLIDGF 378
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 37/217 (17%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
TFN LI G+C I D +L +KM+ G + T +TLI G G +N+ +L QEM
Sbjct: 405 TFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM 464
Query: 86 V---------------NGMGDFGGIYKP--------------NVFCYGSLIDGLCKDRLV 116
V +G+ D G K ++ Y +I G+C V
Sbjct: 465 VSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 524
Query: 117 DQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
D DLF + KG+ LCKK L EA L M + G P +TY L
Sbjct: 525 DDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNIL 584
Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
+ + G ++ L + + R GF D + ++I+
Sbjct: 585 IRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 621
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 131/449 (29%), Positives = 204/449 (45%), Gaps = 96/449 (21%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
A A G I+ Y P + VTF++LI G C+EG + +A +LV +M G +P + T + L+
Sbjct: 126 AFSAMGKIIKLGYEP-DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALV 184
Query: 67 TGLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKP--NVFC--------------------- 102
GL G ++ + L MV G Y P V C
Sbjct: 185 NGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIK 244
Query: 103 -----YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL-------------------- 137
Y +IDGLCKD +D +LF EM+ KG A+ ++
Sbjct: 245 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKL 304
Query: 138 -----------------------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
K+ KL EA L + M+QRG++P TYT L++G+C
Sbjct: 305 LRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364
Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------ 228
+++ A + D M KG P++ ++++LINGYCK +++ + + R+M L G
Sbjct: 365 ENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVT 424
Query: 229 -----------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
K++F EM V P+ + I +DGLC NG + +E+F +E
Sbjct: 425 YNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484
Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
S EL + I+N +I G C + A +LF L K + DV YNI+I L K+G +
Sbjct: 485 KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLS 544
Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFL 360
+ + L MEE+G + + T+N L+ + L
Sbjct: 545 EADLLFRKMEEDGHSPNGCTYNILIRAHL 573
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 162/343 (47%), Gaps = 26/343 (7%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
V++ ++ ++ DA L ++M RP + L + + RT +L L L ++
Sbjct: 38 VSYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQ 97
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
M + GI N++ +I+ C+ R + ++ G +T+
Sbjct: 98 M-----ELKGIAH-NLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLING 151
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
LC + ++ EA L++ M++ G P + T L+NG CL GKV+ A+ L D M GF P+
Sbjct: 152 LCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
+Y ++ CK+ AM + R+M E K + + +I IDGLCK
Sbjct: 212 EVTYGPVLKVMCKSGQTALAMELLRKM---------EERK---IKLDAVKYSIIIDGLCK 259
Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
+G + LF +EI + + I+ +LIRG C G ++ ++L + + + DVVA
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319
Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
++ LI KEG++++ L M + G + D T+ +L+ F
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 26/237 (10%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
TFN LI G+C I D +L +KM+ G + T +TLI G G + + +L QEM
Sbjct: 389 TFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM 448
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK------DKGINANTL--L 137
V+ +P++ Y L+DGLC + ++ ++F +++ D GI + +
Sbjct: 449 VSRR------VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502
Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
C +K+ +A L + +G+ P + TY ++ G C G ++ A LF M G P+
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNG 562
Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
+Y++LI + + ++ K+ E+K C + T + +D L
Sbjct: 563 CTYNILIRAHLGEGDATKS------------AKLIEEIKRCGFSVDASTVKMVVDML 607
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 178 bits (451), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/392 (29%), Positives = 199/392 (50%), Gaps = 39/392 (9%)
Query: 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
+++ A+ + Y+P + VTF +L+ G +A LV++M GC+P++ T
Sbjct: 159 NRISEAVALVDQMVEMGYQP-DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVT 217
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
+I GL + G +L L L +M G + +V Y ++IDGLCK + +D D
Sbjct: 218 YGAVINGLCKRGEPDLALNLLNKMEKGK------IEADVVIYNTIIDGLCKYKHMDDAFD 271
Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
LF +M+ KGI + LC + +A+RLL M+++ +NP + + L++ +
Sbjct: 272 LFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV 331
Query: 174 LVGKVNVAIALFDSMAR-KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------- 223
GK+ A L+D M + K PDV +Y+ LI G+CK VEE M V REM
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 391
Query: 224 -----ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
+++GF + +F +M V P+ T NI +DGLC NG+V + +F
Sbjct: 392 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEY 451
Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
++ + +L + + ++I CK G E +LF LS K + +VV Y ++ ++G
Sbjct: 452 MQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGL 511
Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
++ + L + M+E+G + T+NTL+ + L+
Sbjct: 512 KEEADALFVEMKEDGPLPNSGTYNTLIRARLR 543
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 147/301 (48%), Gaps = 26/301 (8%)
Query: 76 NLTLKLHQEMV--NGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129
NL+ K+ Q++ + +G FG + K P++ + L+ + K D L +M++
Sbjct: 45 NLSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNL 104
Query: 130 GINAN--------TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
GI+ N C++++L A +L MM+ G P I T LLNG+C +++ A
Sbjct: 105 GISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEA 164
Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
+AL D M G+ PD +++ L++G ++ EA+ + M++ G +
Sbjct: 165 VALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQ------------ 212
Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
P+ T I+GLCK G + L +E E V I+N++I G CK+ + A +L
Sbjct: 213 PDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDL 272
Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
FNK+ K + DV YN LI L G+ + LL M E D+ FN L+ +F++
Sbjct: 273 FNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVK 332
Query: 362 K 362
+
Sbjct: 333 E 333
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 14/191 (7%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N VT+ +LI GF + +A + K+M + G P++ T + L+ GL GN+ L +
Sbjct: 390 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVF 449
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
+ M K ++ Y ++I+ LCK V+ DLF + KG+ N +
Sbjct: 450 EYMQKR------DMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 503
Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
C+K EA+ L M + G P TY L+ G + L M GF
Sbjct: 504 SGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFA 563
Query: 195 PDVFSYSVLIN 205
D ++ ++ N
Sbjct: 564 GDASTFGLVTN 574
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/427 (29%), Positives = 203/427 (47%), Gaps = 76/427 (17%)
Query: 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
+ ++ A+ + Y+P + TF +LI G + +A LV +M GC+P++
Sbjct: 166 SKRISDAVALVDQMVEMGYKP-DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV 224
Query: 61 TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
T T++ GL + G+++L L L +M K NV + ++ID LCK R V+
Sbjct: 225 TYGTVVNGLCKRGDIDLALNLLNKME------AARIKANVVIFNTIIDSLCKYRHVEVAV 278
Query: 121 DLFMEMKDKGINANTL--------LC---------------------------------- 138
DLF EM+ KGI N + LC
Sbjct: 279 DLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAF 338
Query: 139 -KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
K+ KLVEA +L E M+QR ++P TY L+NG+C+ +++ A +F M K +P++
Sbjct: 339 FKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNI 398
Query: 198 FSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNE 234
+Y+ LING+CK VE+ + + REM I+ GF + +F +
Sbjct: 399 QTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQ 458
Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
M V + T +I + GLC G + + +F L+ S EL + I+N++I G CK G
Sbjct: 459 MVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGK 518
Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
A +LF LS K DVV YN +I L + +++ + L M+E+G + T+NT
Sbjct: 519 VGEAWDLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNT 575
Query: 355 LMISFLQ 361
L+ + L+
Sbjct: 576 LIRANLR 582
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 158/358 (44%), Gaps = 48/358 (13%)
Query: 3 KVLGALMAFGSFIRRCYRPLND-VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
KV A+ FG ++ RP V FN L+ L ++M T G ++ T
Sbjct: 63 KVDDAVDLFGDMVKS--RPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYT 120
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
I R ++L L + +M+ +G Y+P++ SL++G C +
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMK-LG-----YEPDIVTLSSLLNGYCHSK------- 167
Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
++ +A L++ M++ G P FT+T L++G L K + A
Sbjct: 168 --------------------RISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207
Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241
+AL D M ++G PD+ +Y ++NG CK +++ A+N + N+M+ +
Sbjct: 208 VALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALN------------LLNKMEAARIK 255
Query: 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301
N ID LCK HV ++LF +E V +NSLI C +G + AS L
Sbjct: 256 ANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRL 315
Query: 302 FNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
+ + K + +VV +N LI A KEG++ + L M + D T+N L+ F
Sbjct: 316 LSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGF 373
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 140/283 (49%), Gaps = 24/283 (8%)
Query: 92 FGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCK 139
FG + K P++ + L+ + K + L +M+ GI+ + C+
Sbjct: 71 FGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCR 130
Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
+++L A +L MM+ G P I T + LLNGYC +++ A+AL D M G+ PD F+
Sbjct: 131 RSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFT 190
Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
++ LI+G + EA+ + +M+ G + P+ T ++GLCK G
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQ------------PDLVTYGTVVNGLCKRGD 238
Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
+ + L +E + + V IFN++I CK+ E+A +LF ++ K + +VV YN
Sbjct: 239 IDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNS 298
Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
LI+ L G+ + LL +M E +V TFN L+ +F ++
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKE 341
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 183/344 (53%), Gaps = 30/344 (8%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N +++N +I G C EG +++ S ++ +M G + T +TLI G + GN + L +H
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333
Query: 83 QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TL 136
EM+ +G+ P+V Y SLI +CK +++ + +M+ +G+ N TL
Sbjct: 334 AEMLRHGL-------TPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTL 386
Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
+ +K + EA R+L M G +P + TY L+NG+C+ GK+ AIA+ + M KG
Sbjct: 387 VDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGL 446
Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
PDV SYS +++G+C++++V+EA+ V REM+ G K P+T T + I G
Sbjct: 447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIK------------PDTITYSSLIQG 494
Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
C+ E +L+ + + +LI C G E A +L N++ K ++ D
Sbjct: 495 FCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPD 554
Query: 314 VVAYNILIHALGKEGQIKKENYLLLSM-EENGCALDVDTFNTLM 356
VV Y++LI+ L K+ + ++ LLL + E DV T++TL+
Sbjct: 555 VVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDV-TYHTLI 597
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 110/413 (26%), Positives = 181/413 (43%), Gaps = 102/413 (24%)
Query: 16 RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
RR Y L++VT+N+LIKG+C EGN A + +M G P+V T +LI + + GNM
Sbjct: 303 RRGY-SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNM 361
Query: 76 NLTLKLHQEM---------------VNGMGDFGGI--------------YKPNVFCYGSL 106
N ++ +M V+G G + + P+V Y +L
Sbjct: 362 NRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNAL 421
Query: 107 IDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGL 158
I+G C ++ + +MK+KG++ + + C+ + EA R+ M+++G+
Sbjct: 422 INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481
Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
P TY+ L+ G+C + A L++ M R G PD F+Y+ LIN YC ++E+A+
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541
Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL------------ 266
+ EM+ G V+P+ T ++ I+GL K E L
Sbjct: 542 LHNEMVEKG------------VLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPS 589
Query: 267 ---FPTLEISNCE-LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
+ TL I NC + + SLI+G C G+ A ++F + KN D AYNI+IH
Sbjct: 590 DVTYHTL-IENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIH 648
Query: 323 -----------------------------------ALGKEGQIKKENYLLLSM 340
AL KEG++ + N +++ +
Sbjct: 649 GHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHV 701
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 12/217 (5%)
Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
A + + M++ ++P +FTY L+ G+C G ++VA+ LFD M KG +P+V +Y+ LI+
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248
Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
GYCK +++ + R M L G + P + N+ I+GLC+ G + EV
Sbjct: 249 GYCKLRKIDDGFKLLRSMALKGLE------------PNLISYNVVINGLCREGRMKEVSF 296
Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
+ + L +N+LI+G CK G F A + ++ L V+ Y LIH++
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMC 356
Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
K G + + L M G + T+ TL+ F QK
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 153/342 (44%), Gaps = 27/342 (7%)
Query: 27 FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG-LRRTGNMNLTLKLHQEM 85
F+ ++K + I A +V G P V + + ++ +R N++ + +EM
Sbjct: 137 FDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEM 196
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
+ PNVF Y LI G C +D LF +M+ KG + NTL+
Sbjct: 197 LESQ------VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGY 250
Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
CK K+ + +LL M +GL P + +Y ++NG C G++ + M R+G+ D
Sbjct: 251 CKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE 310
Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
+Y+ LI GYCK N +A+ + EM+ +G + P T I +CK
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHG------------LTPSVITYTSLIHSMCKA 358
Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
G++ ME + + + +L+ G + G A + +++ VV Y
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418
Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
N LI+ G+++ +L M+E G + DV +++T++ F
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGF 460
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 52/231 (22%)
Query: 21 PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN---- 76
P ++ T+ +LI +CMEG++ A QL +M G P+V T LI GL +
Sbjct: 517 PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKR 576
Query: 77 LTLKL-HQEMV------------------------------NGM---------GDFGGIY 96
L LKL ++E V GM G +
Sbjct: 577 LLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNH 636
Query: 97 KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANR 148
KP+ Y +I G C+ + + L+ EM G +T+ L K+ K+ E N
Sbjct: 637 KPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNS 696
Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
++ +++ L+ G ++V + + MA+ GF+P+ S
Sbjct: 697 VIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 169 bits (427), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 118/394 (29%), Positives = 178/394 (45%), Gaps = 68/394 (17%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
+TFN+LI G C+EG + +A+ LV KM G +V T T++ G+ + G+ L L +
Sbjct: 227 ITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSK 286
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
M KP+V Y ++ID LCKD + LF EM +KGI N
Sbjct: 287 MEETH------IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
C + +A RLL M++R +NP + T+ L++ GK+ A L D M + PD
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 400
Query: 197 VFSYSVLINGYCKN--------------------FN-----------VEEAMNVSREMI- 224
+Y+ +I G+CK+ FN V+E M + RE+
Sbjct: 401 TVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISR 460
Query: 225 ----------------------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262
LN + +F EM V P+T TCNI + G C+N + E
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEE 520
Query: 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322
+ELF +++S +L +N +I G CK + A +LF L + DV YN++I
Sbjct: 521 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 580
Query: 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
+ I N L M++NG D T+NTL+
Sbjct: 581 GFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLI 614
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 167/358 (46%), Gaps = 25/358 (6%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
A F + + P N T+N +I GFC G DA +L++ M P+V T + LI
Sbjct: 315 AQYLFSEMLEKGIAP-NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373
Query: 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
+ + G + KL EM++ I+ P+ Y S+I G CK D K +F M
Sbjct: 374 SASVKEGKLFEAEKLCDEMLHRC-----IF-PDTVTYNSMIYGFCKHNRFDDAKHMFDLM 427
Query: 127 KDKGI-NANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
+ NT++ C+ ++ E +LL + +RGL TY L++G+C V +N A
Sbjct: 428 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 487
Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
LF M G PD + ++L+ G+C+N +EEA+ ++F +++ +
Sbjct: 488 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEAL------------ELFEVIQMSKIDL 535
Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
+T NI I G+CK V E +LF +L I E V+ +N +I G C A+ LF
Sbjct: 536 DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLF 595
Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
+K+ D YN LI K G+I K L+ M NG D F M++ L
Sbjct: 596 HKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNG--FSGDAFTIKMVADL 651
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 152/345 (44%), Gaps = 67/345 (19%)
Query: 15 IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
IRR PLN +FN LIK FC D +L ++TFG L + G
Sbjct: 134 IRRI--PLNIYSFNILIKCFC------DCHKLSFSLSTFG-------------KLTKLG- 171
Query: 75 MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
++P+V + +L+ GLC + + + LF M + G
Sbjct: 172 ---------------------FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG---- 206
Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
+EA L + M++ GL PV+ T+ L+NG CL G+V A AL + M KG
Sbjct: 207 --------FLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLH 258
Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
DV +Y ++NG CK + + A+N + ++M+ ++ P+ + ID L
Sbjct: 259 IDVVTYGTIVNGMCKMGDTKSALN------------LLSKMEETHIKPDVVIYSAIIDRL 306
Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
CK+GH + LF + V +N +I G C FG + A L + + + DV
Sbjct: 307 CKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDV 366
Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
+ +N LI A KEG++ + L M D T+N+++ F
Sbjct: 367 LTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGF 411
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 38/221 (17%)
Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLI-------------------------------- 204
+ +VAI+L+ M + +++S+++LI
Sbjct: 121 RPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFN 180
Query: 205 ---NGYCKNFNVEEAMNVSREMILNGFKK---IFNEMKLCNVVPETFTCNIFIDGLCKNG 258
+G C + EA+ + M+ GF + +F++M + P T N I+GLC G
Sbjct: 181 TLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEG 240
Query: 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318
VLE L + + V + +++ G CK G + A L +K+ ++ DVV Y+
Sbjct: 241 RVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYS 300
Query: 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
+I L K+G YL M E G A +V T+N ++ F
Sbjct: 301 AIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGF 341
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 188/375 (50%), Gaps = 40/375 (10%)
Query: 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
S++ AL G I+ + P + VTF SL+ GFC + DA + +M G +PNV
Sbjct: 130 SQLSLALSFLGKMIKLGHEP-SIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVI 188
Query: 62 CDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQT 119
+T+I GL ++ ++ L L M +G+G P+V Y SLI GLC R D T
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIG-------PDVVTYNSLISGLCSSGRWSDAT 241
Query: 120 KDLFMEMKDK------GINANTLLC-KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
+ + K + NA C K+ ++ EA E M++R L+P I TY+ L+ G
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGL 301
Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM--------------N 218
C+ +++ A +F M KG PDV +YS+LINGYCK+ VE M
Sbjct: 302 CMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNT 361
Query: 219 VSREMILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
V+ +++ G+ ++IF M C V P T N+ + GLC NG + + + +
Sbjct: 362 VTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILAD 421
Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
++ + + + +N +IRG CK G A +++ L+C+ L+ D+ Y ++ L K+G
Sbjct: 422 MQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGL 481
Query: 330 IKKENYLLLSMEENG 344
++ + L M+E+G
Sbjct: 482 RREADALFRKMKEDG 496
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 125/267 (46%), Gaps = 20/267 (7%)
Query: 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLLCKKTKLVEANRL 149
P++ + L+ + K + D L+ +M+ GI N C+ ++L A
Sbjct: 79 PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138
Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
L M++ G P I T+ LLNG+C +V A+ +FD M G+ P+V Y+ +I+G CK
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198
Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
+ V+ A++ + N M+ + P+ T N I GLC +G + +
Sbjct: 199 SKQVDNALD------------LLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSC 246
Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
+ V FN+LI C K G A E + ++ ++L D+V Y++LI+ L +
Sbjct: 247 MTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSR 306
Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
+ + + M GC DV T++ L+
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILI 333
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 14/180 (7%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
VT++ LI G+C + +L +M+ G N T LI G R G +N+ ++ +
Sbjct: 327 VTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRR 386
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
MV F G++ PN+ Y L+ GLC + +++ + +M+ G++A+ +
Sbjct: 387 MV-----FCGVH-PNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRG 440
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
+CK ++ +A + + +GL P I+TYT ++ G G A ALF M G +P+
Sbjct: 441 MCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 30/271 (11%)
Query: 109 GLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168
G C R + EM GI + KL ++ L M+Q P I ++ L
Sbjct: 35 GFCFSRRAYSNGSDYREMLRNGI-------RFMKLDDSLDLFFHMVQCRPLPSIADFSRL 87
Query: 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI---- 224
L+ + K +V I L++ M G ++ + ++L+N +C+ + A++ +MI
Sbjct: 88 LSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGH 147
Query: 225 ----------LNGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
LNGF + +F++M P N IDGLCK+ V ++
Sbjct: 148 EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALD 207
Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
L +E V +NSLI G C G + A+ + + ++ + + DV +N LI A
Sbjct: 208 LLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACV 267
Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
KEG++ + M D+ T++ L+
Sbjct: 268 KEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI 298
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 185/379 (48%), Gaps = 38/379 (10%)
Query: 15 IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
+R P + F+ LI + +G + A + KM G PN T +I L ++G
Sbjct: 363 VRNGIHP-DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421
Query: 75 MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
+ + ++M+ D G P Y SLI GLC ++ ++L +EM D+GI N
Sbjct: 422 VEDAMLYFEQMI----DEG--LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 475
Query: 135 TLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
T+ CK+ +++E+ +L ELM++ G+ P + TY L+NGYCL GK++ A+ L
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535
Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---- 228
M G P+ +YS LINGYCK +E+A+ + +EM IL G
Sbjct: 536 GMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR 595
Query: 229 -----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
K+++ + E T NI + GLCKN + +++F L + + +L FN
Sbjct: 596 RTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFN 655
Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
+I K G + A +LF S LV + Y ++ + +G +++ + L LSME+N
Sbjct: 656 IMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN 715
Query: 344 GCALDVDTFNTLMISFLQK 362
GC +D N ++ LQ+
Sbjct: 716 GCTVDSGMLNFIVRELLQR 734
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 169/381 (44%), Gaps = 36/381 (9%)
Query: 10 AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLV-KKMATFGCRPNVTTCDTLITG 68
A G+ I++ +R ++ + F L+KG C + DA +V ++M GC PNV + + L+ G
Sbjct: 109 ALGNVIKKGFR-VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKG 167
Query: 69 LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
L L+L M + D GG P+V Y ++I+G K+ D+ + EM D
Sbjct: 168 LCDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLD 224
Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
+GI + + LCK + +A +L M++ G+ P TY +L+GYC G+
Sbjct: 225 RGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE 284
Query: 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---------- 230
AI M G PDV +YS+L++ CKN EA + M G K
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344
Query: 231 -------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
+ + M + P+ + +I I K G V + M +F +
Sbjct: 345 GYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP 404
Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
+ ++I CK G E A F ++ + L + YN LIH L + ++ L+
Sbjct: 405 NAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464
Query: 338 LSMEENGCALDVDTFNTLMIS 358
L M + G L+ FN+++ S
Sbjct: 465 LEMLDRGICLNTIFFNSIIDS 485
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 159/345 (46%), Gaps = 28/345 (8%)
Query: 21 PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
P + V++ ++I GF EG+ A +M G P+V T +++I L + M+ ++
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAME 252
Query: 81 LHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
+ MV NG+ P+ Y S++ G C + +M+ G+ + +
Sbjct: 253 VLNTMVKNGV-------MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYS 305
Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
LCK + +EA ++ + M +RGL P I TY LL GY G + L D M R
Sbjct: 306 LLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365
Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
G PD + +S+LI Y K V++AM V F++M+ + P T I
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLV------------FSKMRQQGLNPNAVTYGAVI 413
Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
LCK+G V + M F + ++NSLI G C +E A EL ++ + +
Sbjct: 414 GILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC 473
Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
+ + +N +I + KEG++ + L M G +V T+NTL+
Sbjct: 474 LNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 142/333 (42%), Gaps = 41/333 (12%)
Query: 49 KMATFGC---RPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI----YKPNVF 101
+MA G P++ T LI R G ++L G G + ++ +
Sbjct: 74 RMARAGADEVTPDLCTYGILIGCCCRAGRLDL----------GFAALGNVIKKGFRVDAI 123
Query: 102 CYGSLIDGLCKDRLVDQTKDLFME-MKDKGINANTL--------LCKKTKLVEANRLLEL 152
+ L+ GLC D+ D+ + M + G N LC + + EA LL +
Sbjct: 124 AFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHM 183
Query: 153 MMQR---GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
M G P + +YT ++NG+ G + A + + M +G +PDV +Y+ +I CK
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243
Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
+++AM V M+ NG V+P+ T N + G C +G E +
Sbjct: 244 AQAMDKAMEVLNTMVKNG------------VMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291
Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
+ E V ++ L+ CK G A ++F+ ++ + L ++ Y L+ +G
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351
Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
+ + + LL M NG D F+ L+ ++ ++
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQ 384
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 43/206 (20%)
Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
+ P + TY L+ C G++++ A ++ +KGF D +++ L+ G C + +AM
Sbjct: 83 VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142
Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
++ + M +P F+ NI + GLC E +EL +
Sbjct: 143 DI-----------VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD---- 187
Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
RG DVV+Y +I+ KEG K
Sbjct: 188 ---------RG-------------------GGSPPDVVSYTTVINGFFKEGDSDKAYSTY 219
Query: 338 LSMEENGCALDVDTFNTLMISFLQKE 363
M + G DV T+N+++ + + +
Sbjct: 220 HEMLDRGILPDVVTYNSIIAALCKAQ 245
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 166 bits (419), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 175/344 (50%), Gaps = 27/344 (7%)
Query: 22 LNDVTFNSLIKGFCMEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLK 80
++V+ N ++ GFC EG + DA +++M+ G P+ T +TL+ GL + G++ ++
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE 316
Query: 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
+ M+ Y P+V+ Y S+I GLCK V + ++ +M + + NT+
Sbjct: 317 IMDVMLQEG------YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNT 370
Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
LCK+ ++ EA L ++ +G+ P + T+ L+ G CL VA+ LF+ M KG
Sbjct: 371 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG 430
Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
PD F+Y++LI+ C ++EA+N+ ++M L+G + T N ID
Sbjct: 431 CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR------------SVITYNTLID 478
Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
G CK E E+F +E+ +N+LI G CK E A++L +++ +
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538
Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
D YN L+ + G IKK ++ +M NGC D+ T+ TL+
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 176/366 (48%), Gaps = 38/366 (10%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
TFN LIK C +R A +++ M ++G P+ T T++ G G+++ L++ ++M
Sbjct: 191 TFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQM 250
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTL--- 136
V +FG + NV ++ G CK+ V+ + EM ++ NTL
Sbjct: 251 V----EFGCSWS-NV-SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNG 304
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
LCK + A ++++M+Q G +P ++TY +++G C +G+V A+ + D M + P+
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPN 364
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KKIFN 233
+Y+ LI+ CK VEEA ++R + G ++F
Sbjct: 365 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFE 424
Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
EM+ P+ FT N+ ID LC G + E + + +E+S C V +N+LI G CK
Sbjct: 425 EMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKAN 484
Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
A E+F+++ + + V YN LI L K +++ L+ M G D T+N
Sbjct: 485 KTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYN 544
Query: 354 TLMISF 359
+L+ F
Sbjct: 545 SLLTHF 550
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 167/348 (47%), Gaps = 30/348 (8%)
Query: 15 IRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
++ Y P DV T+NS+I G C G +++A +++ +M T C PN T +TLI+ L +
Sbjct: 322 LQEGYDP--DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKEN 379
Query: 74 NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
+ +L + + + GI P+V + SLI GLC R +LF EM+ KG
Sbjct: 380 QVEEATELARVLTSK-----GIL-PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEP 433
Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
+ LC K KL EA +L+ M G + TY L++G+C K A +F
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIF 493
Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
D M G + +Y+ LI+G CK+ VE+A + +MI+ G K P+ +
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK------------PDKY 541
Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
T N + C+ G + + ++ + + CE + + +LI G CK G E+AS+L +
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601
Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM-EENGCALDVDTF 352
K + AYN +I L ++ + + L M E+N D ++
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSY 649
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 137/282 (48%), Gaps = 28/282 (9%)
Query: 22 LNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
L DV TFNSLI+G C+ N R A +L ++M + GC P+ T + LI L G ++ L
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456
Query: 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL---- 136
+ ++M + G + +V Y +LIDG CK + +++F EM+ G++ N++
Sbjct: 457 MLKQM-----ELSGCAR-SVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510
Query: 137 ----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
LCK ++ +A +L++ M+ G P +TY LL +C G + A + +M G
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
PD+ +Y LI+G CK VE A + R + +MK N+ P + N I
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSI----------QMKGINLTPHAY--NPVIQ 618
Query: 253 GLCKNGHVLEVMELF-PTLEISNCELFVEIFNSLIRGCCKFG 293
GL + E + LF LE + + + RG C G
Sbjct: 619 GLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGG 660
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 20/250 (8%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N VT+N+LI G C + DA+QL+ +M G +P+ T ++L+T R G+ +K
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGD----IKKA 559
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
++V M G +P++ YG+LI GLCK V+ L ++ KGIN
Sbjct: 560 ADIVQAMTSNG--CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVI 617
Query: 137 --LCKKTKLVEA-NRLLELMMQRGLNPVIFTYTPLLNGYC-LVGKVNVAIALFDSMARKG 192
L +K K EA N E++ Q P +Y + G C G + A+ + KG
Sbjct: 618 QGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKG 677
Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
F+P+ S +L G ++EE + M++ K F+E ++ ++V F D
Sbjct: 678 FVPEFSSLYMLAEGLL-TLSMEETLVKLVNMVMQ--KARFSEEEV-SMVKGLLKIRKFQD 733
Query: 253 GLCKNGHVLE 262
L G VL+
Sbjct: 734 ALATLGGVLD 743
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 30/199 (15%)
Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCK--NFNVEEAM------NVSREMILNGFKKIFN 233
+ L DS+ + PD + L N K NF+ E A+ + R + KKI
Sbjct: 51 VKLLDSLRSQ---PDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILE 107
Query: 234 EMKLCNVVPETFTCNIFIDGLCK---NGHVLEVME-------LFPTLEISNCELFVEIFN 283
+MK T T I I+ + +L V++ L P + + + N
Sbjct: 108 DMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKP-----DTHFYNRMLN 162
Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
L+ G + EI+ K+S + DV +N+LI AL + Q++ +L M
Sbjct: 163 LLVDGN-SLKLVEIS---HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY 218
Query: 344 GCALDVDTFNTLMISFLQK 362
G D TF T+M ++++
Sbjct: 219 GLVPDEKTFTTVMQGYIEE 237
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 176/367 (47%), Gaps = 73/367 (19%)
Query: 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
+++ A+ + Y+P + VTF +LI G + +A L+ +M GC+P++ T
Sbjct: 162 NRISDAVALVDQMVEMGYKP-DTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVT 220
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
++ GL + G+ +L L L +M + NV Y ++ID LCK R D +
Sbjct: 221 YGAVVNGLCKRGDTDLALNLLNKME------AAKIEANVVIYSTVIDSLCKYRHEDDALN 274
Query: 122 LFMEMKDKGINANTL--------LC----------------------------------- 138
LF EM++KG+ N + LC
Sbjct: 275 LFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFV 334
Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
KK KLV+A +L E M++R ++P IFTY+ L+NG+C++ ++ A + + M RK +P+V
Sbjct: 335 KKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVV 394
Query: 199 SYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFNEM 235
+Y+ LING+CK V++ M + REM +++GF + +F +M
Sbjct: 395 TYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 454
Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295
V P T NI +DGLCKNG + + M +F L+ S E + +N +I G CK G +
Sbjct: 455 VSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKW 514
Query: 296 EIASELF 302
++ F
Sbjct: 515 KMGGIYF 521
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 160/353 (45%), Gaps = 27/353 (7%)
Query: 12 GSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71
G ++ Y P + VT NSL+ GFC I DA LV +M G +P+ T TLI GL
Sbjct: 137 GKMMKLGYEP-DIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFL 195
Query: 72 TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
+ + L MV +P++ YG++++GLCK D +L +M+ I
Sbjct: 196 HNKASEAVALIDRMVQRGC------QPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKI 249
Query: 132 NANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
AN + LCK +A L M +G+ P + TY+ L++ C G+ + A
Sbjct: 250 EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASR 309
Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243
L M + P++ ++S LI+ + K + +A +K++ EM ++ P
Sbjct: 310 LLSDMIERKINPNLVTFSALIDAFVKKGKLVKA------------EKLYEEMIKRSIDPN 357
Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
FT + I+G C + E ++ + +C V +N+LI G CK + ELF
Sbjct: 358 IFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFR 417
Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
++S + LV + V Y LIH + + M G ++ T+N L+
Sbjct: 418 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILL 470
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 26/352 (7%)
Query: 16 RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
RR + + +++ + + DA L MA P++ L++ + +
Sbjct: 35 RRAFSGKTSYDYREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKF 94
Query: 76 NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----- 130
+L + ++M + GI N++ Y LI+ C+ + L +M G
Sbjct: 95 DLVISFGEKM-----EILGI-SHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDI 148
Query: 131 INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
+ N+LL C ++ +A L++ M++ G P T+T L++G L K + A+AL D
Sbjct: 149 VTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDR 208
Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247
M ++G PD+ +Y ++NG CK + + A+N + N+M+ +
Sbjct: 209 MVQRGCQPDLVTYGAVVNGLCKRGDTDLALN------------LLNKMEAAKIEANVVIY 256
Query: 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307
+ ID LCK H + + LF +E V ++SLI C +G + AS L + +
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIE 316
Query: 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
+ + ++V ++ LI A K+G++ K L M + ++ T+++L+ F
Sbjct: 317 RKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGF 368
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 154/362 (42%), Gaps = 56/362 (15%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N T+N LI FC + A L+ KM G P++ T ++L+ G ++ + L
Sbjct: 112 NLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALV 171
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
+MV MG YKP+ + +LI GL F+ K
Sbjct: 172 DQMVE-MG-----YKPDTVTFTTLIHGL------------FLH---------------NK 198
Query: 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202
EA L++ M+QRG P + TY ++NG C G ++A+ L + M +V YS
Sbjct: 199 ASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYST 258
Query: 203 LINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCN 239
+I+ CK + ++A+N+ EM G + ++ ++M
Sbjct: 259 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERK 318
Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
+ P T + ID K G +++ +L+ + + + + ++SLI G C A
Sbjct: 319 INPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAK 378
Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
++ + K+ + +VV YN LI+ K ++ K L M + G + T+ TL+ F
Sbjct: 379 QMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGF 438
Query: 360 LQ 361
Q
Sbjct: 439 FQ 440
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 136/291 (46%), Gaps = 24/291 (8%)
Query: 84 EMVNGMGDFGGIYK----PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
E+ + +G FG + + P++ + L+ + K D +M+ GI+ N
Sbjct: 58 ELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYN 117
Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
C+ ++L A LL MM+ G P I T LLNG+C +++ A+AL D M
Sbjct: 118 ILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEM 177
Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
G+ PD +++ LI+G + EA+ + M+ G + P+ T +
Sbjct: 178 GYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQ------------PDLVTYGAVV 225
Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
+GLCK G + L +E + E V I++++I CK+ + A LF ++ K +
Sbjct: 226 NGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVR 285
Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
+V+ Y+ LI L G+ + LL M E ++ TF+ L+ +F++K
Sbjct: 286 PNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKK 336
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 15/197 (7%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
K++ A + I+R P N T++SLI GFCM + +A Q+++ M C PNV T
Sbjct: 338 KLVKAEKLYEEMIKRSIDP-NIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTY 396
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
+TLI G + ++ ++L +EM + G G N Y +LI G + R D + +
Sbjct: 397 NTLINGFCKAKRVDKGMELFREM-SQRGLVG-----NTVTYTTLIHGFFQARDCDNAQMV 450
Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
F +M G++ N L LCK KL +A + E + + + P I+TY ++ G C
Sbjct: 451 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 510
Query: 175 VGKVNVAIALFDSMARK 191
GK + F + A K
Sbjct: 511 AGKWKMGGIYFVASALK 527
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/391 (28%), Positives = 184/391 (47%), Gaps = 39/391 (9%)
Query: 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMAT-FGCRPNVTTCD 63
+G + A R +P V FN+LI GF G + DA ++ M T +G P+V T +
Sbjct: 335 IGRVDAAKDLFYRIPKP-EIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 393
Query: 64 TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
+LI G + G + L L++ +M N KPNV+ Y L+DG CK +D+ ++
Sbjct: 394 SLIYGYWKEGLVGLALEVLHDMRNKGC------KPNVYSYTILVDGFCKLGKIDEAYNVL 447
Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
EM G+ NT+ CK+ ++ EA + M ++G P ++T+ L++G C V
Sbjct: 448 NEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEV 507
Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG-------- 227
++ A+ L M +G + + +Y+ LIN + + ++EA + EM+ G
Sbjct: 508 DEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITY 567
Query: 228 ---------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
+ +F +M P +CNI I+GLC++G V E +E + +
Sbjct: 568 NSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVL 627
Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
+ FNSLI G C+ G E +F KL + + D V +N L+ L K G +
Sbjct: 628 RGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYD 687
Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
LL E+G + T++ L+ S + +E
Sbjct: 688 ACLLLDEGIEDGFVPNHRTWSILLQSIIPQE 718
Score = 157 bits (398), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 174/370 (47%), Gaps = 46/370 (12%)
Query: 21 PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
P TF ++K FC I A L++ M GC PN TLI L + +N L+
Sbjct: 214 PPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQ 273
Query: 81 LHQEM---------------VNGMGDFGGI--------------YKPNVFCYGSLIDGLC 111
L +EM + G+ F I + P+ YG L++GLC
Sbjct: 274 LLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLC 333
Query: 112 KDRLVDQTKDLFMEM-KDKGINANTLL---CKKTKLVEANRLL-ELMMQRGLNPVIFTYT 166
K VD KDLF + K + + NTL+ +L +A +L +++ G+ P + TY
Sbjct: 334 KIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 393
Query: 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226
L+ GY G V +A+ + M KG P+V+SY++L++G+CK ++EA NV EM +
Sbjct: 394 SLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD 453
Query: 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286
G K P T N I CK + E +E+F + C+ V FNSLI
Sbjct: 454 GLK------------PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLI 501
Query: 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
G C+ + A L + + +VA+ V YN LI+A + G+IK+ L+ M G
Sbjct: 502 SGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSP 561
Query: 347 LDVDTFNTLM 356
LD T+N+L+
Sbjct: 562 LDEITYNSLI 571
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 131/308 (42%), Gaps = 47/308 (15%)
Query: 89 MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD--------KGINA--NTLLC 138
M D G ++K ++F S++ K QT L +EM++ K N L+
Sbjct: 137 MKDEGIVFKESLFI--SIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVS 194
Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
V AN + M+ R + P +FT+ ++ +C V +++ A++L M + G +P+
Sbjct: 195 GNCHKVAANVFYD-MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSV 253
Query: 199 SYSVLINGYCKNFNVEEAMNVSREMIL-----------------------NGFKKIFNEM 235
Y LI+ K V EA+ + EM L N K+ N M
Sbjct: 254 IYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRM 313
Query: 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELF---PTLEISNCELFVEIFNSLIRGCCKF 292
+ P+ T ++GLCK G V +LF P EI IFN+LI G
Sbjct: 314 LIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIV-------IFNTLIHGFVTH 366
Query: 293 GIFEIASELFNKL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
G + A + + + + +V DV YN LI+ KEG + +L M GC +V +
Sbjct: 367 GRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYS 426
Query: 352 FNTLMISF 359
+ L+ F
Sbjct: 427 YTILVDGF 434
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 179/371 (48%), Gaps = 44/371 (11%)
Query: 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
LG +M G + P + VTF SL+ G+C I DA L ++ G +PNV T T
Sbjct: 141 LGKMMKLG------FEP-DLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTT 193
Query: 65 LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
LI L + ++N + E+ N MG G +PNV Y +L+ GLC+ L
Sbjct: 194 LIRCLCKNRHLNHAV----ELFNQMGTNGS--RPNVVTYNALVTGLCEIGRWGDAAWLLR 247
Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
+M + I N + K KL+EA L +M+Q + P +FTY L+NG C+ G
Sbjct: 248 DMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYG 307
Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------------- 223
++ A +F M R G P+ Y+ LI+G+CK+ VE+ M + EM
Sbjct: 308 LLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYT 367
Query: 224 -ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
++ G+ +++FN+M P+ T N+ +DGLC NG V + + +F +
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKR 427
Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333
++ + + +I+G CK G E A +LF L K + +V+ Y +I + G I +
Sbjct: 428 EMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEA 487
Query: 334 NYLLLSMEENG 344
+ L M+E+G
Sbjct: 488 DSLFKKMKEDG 498
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 146/331 (44%), Gaps = 45/331 (13%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
T N ++ C+ AS + KM G P++ T +L+ G + + L ++
Sbjct: 120 TCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQI 179
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
+ GMG +KPNV Y +LI LCK+R ++ +LF +M G N
Sbjct: 180 L-GMG-----FKPNVVTYTTLIRCLCKNRHLNHAVELFNQM---GTN------------- 217
Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
G P + TY L+ G C +G+ A L M ++ P+V +++ LI+
Sbjct: 218 -----------GSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALID 266
Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
+ K + EA K+++N M +V P+ FT I+GLC G + E +
Sbjct: 267 AFVKVGKLMEA------------KELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQ 314
Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
+F +E + C I+ +LI G CK E ++F ++S K +VA+ + Y +LI
Sbjct: 315 MFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYC 374
Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
G+ + M D+ T+N L+
Sbjct: 375 LVGRPDVAQEVFNQMSSRRAPPDIRTYNVLL 405
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 149/353 (42%), Gaps = 35/353 (9%)
Query: 27 FNSLIKGFCMEG--------NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
F S++KGF + N R A+ L F R + L GL N
Sbjct: 9 FASIVKGFHLHSHRHRLQISNPRTAASLSLCGFCFWIRAFSSYRKILRNGLHNL-QFNDA 67
Query: 79 LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NA 133
L L MV+ P++ + L+ + K D LF +M+ GI
Sbjct: 68 LDLFTRMVHSRP------LPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTC 121
Query: 134 NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
N ++ C ++ A+ L MM+ G P + T+T LLNGYC ++ AIALFD +
Sbjct: 122 NIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILG 181
Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
GF P+V +Y+ LI CKN ++ A+ + +M NG + P T N
Sbjct: 182 MGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSR------------PNVVTYNAL 229
Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
+ GLC+ G + L + E V F +LI K G A EL+N + ++
Sbjct: 230 VTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSV 289
Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
DV Y LI+ L G + + + ME NGC + + TL+ F + +
Sbjct: 290 YPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSK 342
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 123/282 (43%), Gaps = 75/282 (26%)
Query: 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM---- 75
RP N VT+N+L+ G C G DA+ L++ M PNV T LI + G +
Sbjct: 220 RP-NVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAK 278
Query: 76 ---NLTLKL--------HQEMVNGMGDFG---------------GIYKPNVFCYGSLIDG 109
N+ +++ + ++NG+ +G G Y PN Y +LI G
Sbjct: 279 ELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCY-PNEVIYTTLIHG 337
Query: 110 LCKDRLVDQTKDLFMEMKDKGINANTL--------------------------------- 136
CK + V+ +F EM KG+ ANT+
Sbjct: 338 FCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPD 397
Query: 137 ----------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
LC K+ +A + E M +R ++ I TYT ++ G C +GKV A LF
Sbjct: 398 IRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFC 457
Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
S+ KG P+V +Y+ +I+G+C+ + EA ++ ++M +GF
Sbjct: 458 SLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGF 499
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 16/191 (8%)
Query: 18 CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL 77
CY N+V + +LI GFC + D ++ +M+ G N T LI G G ++
Sbjct: 324 CYP--NEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDV 381
Query: 78 TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL- 136
QE+ N M P++ Y L+DGLC + V++ +F M+ + ++ N +
Sbjct: 382 A----QEVFNQMSSRRA--PPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVT 435
Query: 137 -------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189
+CK K+ +A L + +G+ P + TYT +++G+C G ++ A +LF M
Sbjct: 436 YTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMK 495
Query: 190 RKGFMPDVFSY 200
GF+P+ Y
Sbjct: 496 EDGFLPNESVY 506
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
KV ALM F ++R+ +N VT+ +I+G C G + DA L + + G +PNV T
Sbjct: 413 KVEKALMIF-EYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITY 471
Query: 63 DTLITGLRRTGNMNLTLKLHQEM 85
T+I+G R G ++ L ++M
Sbjct: 472 TTMISGFCRRGLIHEADSLFKKM 494
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/344 (30%), Positives = 171/344 (49%), Gaps = 26/344 (7%)
Query: 21 PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
PLN FN L+ FC EGNI DA ++ ++ +P V + +TLI G + GN++ +
Sbjct: 237 PLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFR 296
Query: 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----T 135
L +M +P+VF Y +LI+ LCK+ +D LF EM +G+ N T
Sbjct: 297 LKHQMEKSRT------RPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTT 350
Query: 136 LLCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
L+ ++ E + + E M+ +GL P I Y L+NG+C G + A + D M R+G
Sbjct: 351 LIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410
Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252
PD +Y+ LI+G+C+ +VE A+ + +EM NG ++L V C
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNG-------IELDRVGFSALVC----- 458
Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
G+CK G V++ + + + + ++ CK G + +L ++ V
Sbjct: 459 GMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVP 518
Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
VV YN+L++ L K GQ+K + LL +M G D T+NTL+
Sbjct: 519 SVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLL 562
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 31/290 (10%)
Query: 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL--------CKKTKLVEANRLLELMMQ 155
G+L+D + K +ME+ D G N + CK+ + +A ++ + + +
Sbjct: 209 GNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITK 268
Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
R L P + ++ L+NGYC VG ++ L M + PDVF+YS LIN CK ++
Sbjct: 269 RSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDG 328
Query: 216 AMNVSREMILNGF-----------------------KKIFNEMKLCNVVPETFTCNIFID 252
A + EM G K+ + +M + P+ N ++
Sbjct: 329 AHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVN 388
Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
G CKNG ++ + + + +LI G C+ G E A E+ ++ +
Sbjct: 389 GFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIEL 448
Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
D V ++ L+ + KEG++ L M G D T+ +M +F +K
Sbjct: 449 DRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKK 498
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 20/224 (8%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
V +N+L+ GFC G++ A +V M G RP+ T TLI G R G++ L++ +E
Sbjct: 381 VLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKE 440
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTL------- 136
M D GI V + +L+ G+CK+ R++D + L EM GI + +
Sbjct: 441 M-----DQNGIELDRV-GFSALVCGMCKEGRVIDAERAL-REMLRAGIKPDDVTYTMMMD 493
Query: 137 -LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
CKK +LL+ M G P + TY LLNG C +G++ A L D+M G +P
Sbjct: 494 AFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVP 553
Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREM----ILNGFKKIFNEM 235
D +Y+ L+ G+ ++ N + E+ L +K I NE+
Sbjct: 554 DDITYNTLLEGHHRHANSSKRYIQKPEIGIVADLASYKSIVNEL 597
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 196/411 (47%), Gaps = 63/411 (15%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
++L A+ +FG N V +N+++ FC EG D+ ++V+KM G P++ T
Sbjct: 203 ELLNAMESFGVLP-------NKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTF 255
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
++ I+ L + G + ++ +M + ++ G+ +PN Y ++ G CK L++ K L
Sbjct: 256 NSRISALCKEGKVLDASRIFSDME--LDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTL 313
Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
F +++ A+ L + K +EA +L+ M +G+ P I++Y L++G C
Sbjct: 314 FESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCK 373
Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG------- 227
+G ++ A + M R G PD +Y L++GYC V+ A ++ +EM+ N
Sbjct: 374 LGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYT 433
Query: 228 ----------------FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
+++ +M +T TCNI +DGLC +G + + +E+ +
Sbjct: 434 CNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMR 493
Query: 272 I-----------------------SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
+ +NC + +++L+ G CK G F A LF ++ +
Sbjct: 494 VHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGE 553
Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
L D VAYNI IH K+G+I +L ME+ GC ++T+N+L++
Sbjct: 554 KLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGL 604
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 163/343 (47%), Gaps = 30/343 (8%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
TFN LI+ C + A +L +M GC+PN T L+ G + G + L E+
Sbjct: 149 TFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGL----EL 204
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TLL 137
+N M FG + PN Y +++ C++ D ++ + +M+++G+ + + L
Sbjct: 205 LNAMESFGVL--PNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISAL 262
Query: 138 CKKTKLVEANRL---LELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
CK+ K+++A+R+ +EL GL P TY +L G+C VG + A LF+S+
Sbjct: 263 CKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322
Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
+ + SY++ + G ++ EA V ++M G + P ++ NI +DG
Sbjct: 323 LASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKG------------IGPSIYSYNILMDG 370
Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
LCK G + + + ++ + + L+ G C G + A L ++ N + +
Sbjct: 371 LCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPN 430
Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
NIL+H+L K G+I + LL M E G LD T N ++
Sbjct: 431 AYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIV 473
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 158/368 (42%), Gaps = 34/368 (9%)
Query: 10 AFGSF-IRRCYRPLNDVT---FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
AF F + R P N + +N L++ E + S L K M G P T + L
Sbjct: 94 AFPQFQLVRSRFPENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLL 153
Query: 66 ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
I L + ++ +L EM KPN F +G L+ G CK L D+ +L
Sbjct: 154 IRALCDSSCVDAARELFDEMPEKG------CKPNEFTFGILVRGYCKAGLTDKGLELLNA 207
Query: 126 MKDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
M+ G+ N ++ C++ + ++ +++E M + GL P I T+ ++ C GK
Sbjct: 208 MESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGK 267
Query: 178 VNVAIALFDSMARKGFM----PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
V A +F M ++ P+ +Y++++ G+CK +E+A K +F
Sbjct: 268 VLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDA------------KTLFE 315
Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
++ + + + NI++ GL ++G +E + + + +N L+ G CK G
Sbjct: 316 SIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLG 375
Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
+ A + + + D V Y L+H G++ LL M N C + T N
Sbjct: 376 MLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCN 435
Query: 354 TLMISFLQ 361
L+ S +
Sbjct: 436 ILLHSLWK 443
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 142/352 (40%), Gaps = 50/352 (14%)
Query: 22 LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-----------------------CRPN 58
L+ VT N ++ G C G + A ++VK M G C P+
Sbjct: 464 LDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPD 523
Query: 59 VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ 118
+ T TL+ GL + G L EM+ G +P+ Y I CK +
Sbjct: 524 LITYSTLLNGLCKAGRFAEAKNLFAEMM------GEKLQPDSVAYNIFIHHFCKQGKISS 577
Query: 119 TKDLFMEMKDKGINA-----NTLLCK---KTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170
+ +M+ KG + N+L+ K ++ E + L++ M ++G++P I TY +
Sbjct: 578 AFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQ 637
Query: 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
C KV A L D M +K P+VFS+ LI +CK + + A V +
Sbjct: 638 YLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAV------ 691
Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
+C ++ + + L G +L+ EL + EL ++ L+ C
Sbjct: 692 -----SICGQKEGLYS--LMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLC 744
Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342
K E+AS + +K+ + D A +I LGK G K+ N M E
Sbjct: 745 KKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKEANSFADKMME 796
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
P V+ Y++L+ K VE + ++M+L C + P+T+T N+ I L
Sbjct: 110 PSVYLYNLLLESCIKERRVEFVSWLYKDMVL------------CGIAPQTYTFNLLIRAL 157
Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
C + V ELF + C+ F L+RG CK G+ + EL N + ++ +
Sbjct: 158 CDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNK 217
Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
V YN ++ + +EG+ ++ M E G D+ TFN+ IS L KE
Sbjct: 218 VIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNS-RISALCKE 265
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 174/375 (46%), Gaps = 40/375 (10%)
Query: 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
S++ AL G ++ Y P + VTF SL+ GFC+ I DA LV M G PNV
Sbjct: 120 SRLSFALSVLGKMMKLGYEP-SIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVV 178
Query: 62 CDTLITGLRRTGNMNLTLKLHQEM-VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
+TLI GL + G +N+ L+L EM G+G +V Y +L+ GLC
Sbjct: 179 YNTLIDGLCKNGELNIALELLNEMEKKGLG-------ADVVTYNTLLTGLCYSGRWSDAA 231
Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
+ +M + IN + + K+ L EA L + M+Q ++P TY ++NG
Sbjct: 232 RMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGL 291
Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-- 230
C+ G++ A FD MA KG P+V +Y+ LI+G+CK V+E M + + M GF
Sbjct: 292 CMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADI 351
Query: 231 ---------------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
IF M V P+ T I + GLC NG + + F
Sbjct: 352 FTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDD 411
Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
+ S + + +N +I G CK E A ELF +L + + D Y I+I L K G
Sbjct: 412 MRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGP 471
Query: 330 IKKENYLLLSMEENG 344
++ + L+ M+E G
Sbjct: 472 RREADELIRRMKEEG 486
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 142/300 (47%), Gaps = 26/300 (8%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
VT+N+L+ G C G DA+++++ M P+V T LI + GN++ +L++E
Sbjct: 212 VTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKE 271
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
M+ D PN Y S+I+GLC + K F M KG + NTL+
Sbjct: 272 MIQSSVD------PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISG 325
Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
CK + E +L + M G N IFTY L++GYC VGK+ VA+ +F M + PD
Sbjct: 326 FCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
+ ++ +L++G C N +E A+ F++M+ NI I GLCK
Sbjct: 386 IITHCILLHGLCVNGEIESAL------------VKFDDMRESEKYIGIVAYNIMIHGLCK 433
Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
V + ELF L + + + +I G CK G A EL ++ + ++ + A
Sbjct: 434 ADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNA 493
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 162/341 (47%), Gaps = 30/341 (8%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
+F LI FC + A ++ KM G P++ T +L+ G + L M
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL--- 137
V Y+PNV Y +LIDGLCK+ ++ +L EM+ KG+ A NTLL
Sbjct: 168 VKSG------YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221
Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
C + +A R+L MM+R +NP + T+T L++ + G ++ A L+ M + P+
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNN 281
Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
+Y+ +ING C + + +A KK F+ M P T N I G CK
Sbjct: 282 VTYNSIINGLCMHGRLYDA------------KKTFDLMASKGCFPNVVTYNTLISGFCKF 329
Query: 258 GHVLEVMELFPTL--EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
V E M+LF + E N ++F +N+LI G C+ G +A ++F + + + D++
Sbjct: 330 RMVDEGMKLFQRMSCEGFNADIFT--YNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDII 387
Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
+ IL+H L G+I+ M E+ + + +N ++
Sbjct: 388 THCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMI 428
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 141/314 (44%), Gaps = 45/314 (14%)
Query: 48 KKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107
+KM +G ++ + LI R ++ L + +M+ +G Y+P++ +GSL+
Sbjct: 95 QKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMK-LG-----YEPSIVTFGSLL 148
Query: 108 DGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
G C LV++ D F L+ LM++ G P + Y
Sbjct: 149 HGFC---LVNRIGDAF------------------------SLVILMVKSGYEPNVVVYNT 181
Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
L++G C G++N+A+ L + M +KG DV +Y+ L+ G C + +A + R+M+
Sbjct: 182 LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMM--- 238
Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
K+ N P+ T ID K G++ E EL+ + S+ + +NS+I
Sbjct: 239 -KRSIN--------PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIIN 289
Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347
G C G A + F+ ++ K +VV YN LI K + + L M G
Sbjct: 290 GLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNA 349
Query: 348 DVDTFNTLMISFLQ 361
D+ T+NTL+ + Q
Sbjct: 350 DIFTYNTLIHGYCQ 363
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 12/203 (5%)
Query: 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
P I +T LL + + I M G D++S+++LI+ +C+ + A++V
Sbjct: 69 PSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSV 128
Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279
+M+ G++ P T + G C + + L + S E V
Sbjct: 129 LGKMMKLGYE------------PSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNV 176
Query: 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339
++N+LI G CK G IA EL N++ K L ADVV YN L+ L G+ +L
Sbjct: 177 VVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRD 236
Query: 340 MEENGCALDVDTFNTLMISFLQK 362
M + DV TF L+ F+++
Sbjct: 237 MMKRSINPDVVTFTALIDVFVKQ 259
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 178/364 (48%), Gaps = 38/364 (10%)
Query: 12 GSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71
G ++ +RP + VT SL+ GFC ++A LV M FG PNV +T+I GL +
Sbjct: 138 GKMMKLGFRP-SIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCK 196
Query: 72 TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131
++N L++ M + GI + + Y +LI GL L +M + I
Sbjct: 197 NRDLNNALEVFYCM-----EKKGI-RADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKI 250
Query: 132 NANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183
+ N + K+ L+EA L + M++R + P +FTY L+NG+C+ G + A
Sbjct: 251 DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKY 310
Query: 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------------- 228
+FD M KG PDV +Y+ LI G+CK+ VE+ M + EM G
Sbjct: 311 MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 370
Query: 229 --------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
+K+FN M C V P+ T NI +D LC NG + + + + L+ S ++ +
Sbjct: 371 QAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDII 430
Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
+N +I+G C+ + A LF L+ K + D +AY +I L ++G ++ + L M
Sbjct: 431 TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRM 490
Query: 341 EENG 344
+E+G
Sbjct: 491 KEDG 494
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 151/331 (45%), Gaps = 45/331 (13%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
+F LI FC + A L+ KM G RP++ T +L+ G + + L
Sbjct: 116 SFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSL---- 171
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
V+ M FG + PNV Y ++I+GLCK+R ++ ++F M+ KGI A+ +
Sbjct: 172 VDSMDGFG--FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAV--------- 220
Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
TY L++G G+ A L M ++ P+V ++ LI+
Sbjct: 221 ------------------TYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALID 262
Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
+ K N+ EA N+ +EMI +VVP FT N I+G C +G + +
Sbjct: 263 TFVKEGNLLEARNLYKEMIRR------------SVVPNVFTYNSLINGFCIHGCLGDAKY 310
Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
+F + C V +N+LI G CK E +LF +++ + LV D YN LIH
Sbjct: 311 MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 370
Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
+ G++ + M + G + D+ T+N L+
Sbjct: 371 QAGKLNVAQKVFNRMVDCGVSPDIVTYNILL 401
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 18/242 (7%)
Query: 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63
+L A + IRR P N T+NSLI GFC+ G + DA + M + GC P+V T +
Sbjct: 270 LLEARNLYKEMIRRSVVP-NVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYN 328
Query: 64 TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF 123
TLITG ++ + +KL EM + G+ + F Y +LI G C+ ++ + +F
Sbjct: 329 TLITGFCKSKRVEDGMKLFCEMT-----YQGLVG-DAFTYNTLIHGYCQAGKLNVAQKVF 382
Query: 124 MEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175
M D G++ + + LC K+ +A ++E + + ++ I TY ++ G C
Sbjct: 383 NRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRT 442
Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---KKIF 232
K+ A LF S+ RKG PD +Y +I+G C+ EA + R M +GF ++I+
Sbjct: 443 DKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 502
Query: 233 NE 234
+E
Sbjct: 503 DE 504
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 12/211 (5%)
Query: 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
MM+ G P I T LLNG+C + A++L DSM GF+P+V Y+ +ING CKN +
Sbjct: 140 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 199
Query: 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272
+ A+ V F M+ + + T N I GL +G + L +
Sbjct: 200 LNNALEV------------FYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVK 247
Query: 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
+ V F +LI K G A L+ ++ +++V +V YN LI+ G +
Sbjct: 248 RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD 307
Query: 333 ENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
Y+ M GC DV T+NTL+ F + +
Sbjct: 308 AKYMFDLMVSKGCFPDVVTYNTLITGFCKSK 338
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 14/229 (6%)
Query: 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
N L C K +A L M+Q P I +T +L + K ++ I L+ M G
Sbjct: 53 NELHC--IKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGI 110
Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
D++S+++LI+ +C+ + A+ + +M+ GF+ P T ++G
Sbjct: 111 SHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFR------------PSIVTLGSLLNG 158
Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
C+ E + L +++ V I+N++I G CK A E+F + K + AD
Sbjct: 159 FCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRAD 218
Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
V YN LI L G+ LL M + +V F L+ +F+++
Sbjct: 219 AVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKE 267
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 177/366 (48%), Gaps = 28/366 (7%)
Query: 6 GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
GA+ G I + +P + +T+N+LI G C ++A + KM G P+ T +TL
Sbjct: 269 GAVRMVGCLIEQGPKP-DVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTL 327
Query: 66 ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
I G + G + L E + G F G + P+ F Y SLIDGLC + ++ LF E
Sbjct: 328 IAGYCKGGMVQLA-----ERIVGDAVFNG-FVPDQFTYRSLIDGLCHEGETNRALALFNE 381
Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
KGI N + L + ++EA +L M ++GL P + T+ L+NG C +G
Sbjct: 382 ALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGC 441
Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
V+ A L M KG+ PD+F++++LI+GY +E A+ + M+ NG
Sbjct: 442 VSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNG---------- 491
Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
V P+ +T N ++GLCK +VME + T+ C + FN L+ C++ +
Sbjct: 492 --VDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDE 549
Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN-GCALDVDTFNTLM 356
A L ++ K++ D V + LI K G + L MEE + T+N ++
Sbjct: 550 ALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIII 609
Query: 357 ISFLQK 362
+F +K
Sbjct: 610 HAFTEK 615
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 167/367 (45%), Gaps = 28/367 (7%)
Query: 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
SK A + G + P + T+N+LI G+C G ++ A ++V G P+ T
Sbjct: 300 SKFQEAEVYLGKMVNEGLEP-DSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFT 358
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
+LI GL G N L L E + G KPNV Y +LI GL ++ +
Sbjct: 359 YRSLIDGLCHEGETNRALALFNEAL------GKGIKPNVILYNTLIKGLSNQGMILEAAQ 412
Query: 122 LFMEMKDKGI-----NANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
L EM +KG+ N L LCK + +A+ L+++M+ +G P IFT+ L++GY
Sbjct: 413 LANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYS 472
Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
K+ A+ + D M G PDV++Y+ L+NG CK E+ M + M+ G
Sbjct: 473 TQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKG------ 526
Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
P FT NI ++ LC+ + E + L ++ + F +LI G CK G
Sbjct: 527 ------CAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNG 580
Query: 294 IFEIASELFNKL-SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
+ A LF K+ + + YNI+IHA ++ + L M + D T+
Sbjct: 581 DLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTY 640
Query: 353 NTLMISF 359
++ F
Sbjct: 641 RLMVDGF 647
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 174/389 (44%), Gaps = 60/389 (15%)
Query: 31 IKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG-- 88
+K + +G +++A + ++M + C P V + + +++ L +G + K++ M +
Sbjct: 83 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGI 142
Query: 89 ----------MGDFGGIYKP-----------------NVFCYGSLIDGLCKDRLVDQTKD 121
M F +P NV Y +++ G ++ + +
Sbjct: 143 TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYE 202
Query: 122 LFMEMKDKGINA-----NTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
LF +M G++ N LL CKK + E +LL+ +++RG+ P +FTY + G C
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLC 262
Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----- 228
G+++ A+ + + +G PDV +Y+ LI G CKN +EA +M+ G
Sbjct: 263 QRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSY 322
Query: 229 ------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270
++I + VP+ FT IDGLC G + LF
Sbjct: 323 TYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEA 382
Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
+ V ++N+LI+G G+ A++L N++S K L+ +V +NIL++ L K G +
Sbjct: 383 LGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCV 442
Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISF 359
+ L+ M G D+ TFN L+ +
Sbjct: 443 SDADGLVKVMISKGYFPDIFTFNILIHGY 471
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 118/282 (41%), Gaps = 62/282 (21%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
TFN L+ G C G + DA LVK M + G P++ T + LI G M L++ M
Sbjct: 428 TFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM 487
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
++ D P+V+ Y SL++GLCK + + + M +KG N L
Sbjct: 488 LDNGVD------PDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG--------------------- 176
C+ KL EA LLE M + +NP T+ L++G+C G
Sbjct: 542 CRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSS 601
Query: 177 -------------KVNVAIA--LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221
K+NV +A LF M + PD ++Y ++++G+CK NV
Sbjct: 602 TPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLL 661
Query: 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263
EM+ NGF +P T I+ LC V E
Sbjct: 662 EMMENGF------------IPSLTTLGRVINCLCVEDRVYEA 691
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 15/212 (7%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
T+NSL+ G C D + K M GC PN+ T + L+ L R ++ L L +EM
Sbjct: 498 TYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEM 557
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANT--------L 136
N P+ +G+LIDG CK+ +D LF +M++ ++++T
Sbjct: 558 KNKS------VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHA 611
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
+K + A +L + M+ R L P +TY +++G+C G VN+ M GF+P
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPS 671
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228
+ + +IN C V EA + M+ G
Sbjct: 672 LTTLGRVINCLCVEDRVYEAAGIIHRMVQKGL 703
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 126/282 (44%), Gaps = 22/282 (7%)
Query: 84 EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-------KGINANTL 136
EM N M G +K + Y S+I+ L + +++ ++M++ +G+ +
Sbjct: 25 EMFNSMRKEVG-FKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAM 83
Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
+K K+ EA + E M P +F+Y +++ G + A ++ M +G
Sbjct: 84 KNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGIT 143
Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
PDV+S+++ + +CK A+ + M G + N + C VV + N +G
Sbjct: 144 PDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCE--MNVVAYCTVVGGFYEENFKAEGY 201
Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
ELF + S L + FN L+R CK G + +L +K+ + ++ ++
Sbjct: 202 ----------ELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNL 251
Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
YN+ I L + G++ ++ + E G DV T+N L+
Sbjct: 252 FTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLI 293
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 12/198 (6%)
Query: 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224
Y + Y GKV A+ +F+ M P VFSY+ +++ + ++A
Sbjct: 79 YVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQA-------- 130
Query: 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
K++ M+ + P+ ++ I + CK + L + CE+ V + +
Sbjct: 131 ----HKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCT 186
Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
++ G + ELF K+ + + +N L+ L K+G +K+ LL + + G
Sbjct: 187 VVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG 246
Query: 345 CALDVDTFNTLMISFLQK 362
++ T+N + Q+
Sbjct: 247 VLPNLFTYNLFIQGLCQR 264
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 89/188 (47%), Gaps = 22/188 (11%)
Query: 181 AIALFDSMARK-GFMPDVFSYSVLIN--GYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
A+ +F+SM ++ GF + +Y +I GY F EAM E++++ + + N M
Sbjct: 23 ALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKF---EAM---EEVLVDMRENVGNHM-- 74
Query: 238 CNVVPETFTCNIFIDGL---CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
+++ + + G V E + +F ++ +CE V +N+++ G
Sbjct: 75 --------LEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGY 126
Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
F+ A +++ ++ + + DV ++ I + + K + LL +M GC ++V + T
Sbjct: 127 FDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCT 186
Query: 355 LMISFLQK 362
++ F ++
Sbjct: 187 VVGGFYEE 194
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 155 bits (391), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 175/353 (49%), Gaps = 37/353 (10%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N V + +LI G C +G I A L +M G N T LI GL + G +++
Sbjct: 197 NVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMY 256
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
++M G++ PN++ Y +++ LCKD +F EM+++G++ N +
Sbjct: 257 EKMQED-----GVF-PNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLI 310
Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
LC++ KL EAN++++ M G+NP + TY L++G+C VGK+ A++L + +G
Sbjct: 311 GGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLS 370
Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KI 231
P + +Y++L++G+C+ + A + +EM G K ++
Sbjct: 371 PSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQL 430
Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
M+ +VP+ T ++ I G C G + E LF ++ NCE I+N++I G CK
Sbjct: 431 RLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCK 490
Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
G A +L ++ K L +V +Y +I L KE + K+ L+ M ++G
Sbjct: 491 EGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSG 543
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 143/310 (46%), Gaps = 26/310 (8%)
Query: 58 NVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD 117
+V + LI G G + + L E+ +FG + PNV Y +LIDG CK ++
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELT----EFG--FSPNVVIYTTLIDGCCKKGEIE 215
Query: 118 QTKDLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169
+ KDLF EM G+ AN L K + + E M + G+ P ++TY ++
Sbjct: 216 KAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVM 275
Query: 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
N C G+ A +FD M +G ++ +Y+ LI G C REM LN
Sbjct: 276 NQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLC------------REMKLNEAN 323
Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
K+ ++MK + P T N IDG C G + + + L L+ + +N L+ G
Sbjct: 324 KVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGF 383
Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
C+ G A+++ ++ + + V Y ILI + ++K L LSMEE G DV
Sbjct: 384 CRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDV 443
Query: 350 DTFNTLMISF 359
T++ L+ F
Sbjct: 444 HTYSVLIHGF 453
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 14/217 (6%)
Query: 141 TKLVEANRLLELMMQRGLNPVIFT-YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
++ ++ LL + + + F Y ++N Y +N++I+ F+ M GF+P
Sbjct: 72 SQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVP---- 127
Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
C N+ + + S N + FNE K VV + ++ I I G C+ G
Sbjct: 128 -----GSNCFNYLLTFVVGSSS---FNQWWSFFNENK-SKVVLDVYSFGILIKGCCEAGE 178
Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
+ + +L L V I+ +LI GCCK G E A +LF ++ LVA+ Y +
Sbjct: 179 IEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTV 238
Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
LI+ L K G K+ + M+E+G ++ T+N +M
Sbjct: 239 LINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVM 275
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
T++ LI GFC++G + +AS+L K M C PN +T+I G + G+ LKL +EM
Sbjct: 445 TYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEM 504
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
PNV Y +I+ LCK+R + + L +M D GI+ +T
Sbjct: 505 EEKE------LAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPST 548
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 154 bits (389), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 171/351 (48%), Gaps = 29/351 (8%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
+ V +N LI G C +G++ ++LV M GC PN T +TLI GL G ++ + L
Sbjct: 256 SPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLL 315
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-------- 134
+ MV+ PN YG+LI+GL K R L M+++G + N
Sbjct: 316 ERMVSSKC------IPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLI 369
Query: 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
+ L K+ K EA L M ++G P I Y+ L++G C GK N A + + M G +
Sbjct: 370 SGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCL 429
Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
P+ ++YS L+ G+ K EEA+ V +EM G + F ++ IDGL
Sbjct: 430 PNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSR------------NKFCYSVLIDGL 477
Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK---NLV 311
C G V E M ++ + + ++S+I+G C G + A +L++++ C+
Sbjct: 478 CGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQ 537
Query: 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
DVV YNIL+ L + I + LL SM + GC DV T NT + + +K
Sbjct: 538 PDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEK 588
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 127/267 (47%), Gaps = 20/267 (7%)
Query: 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
P+ + Y +L+DGLCK+ +D+ L EM+ +G + + + LCKK L +L
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKL 279
Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
++ M +G P TY L++G CL GK++ A++L + M +P+ +Y LING K
Sbjct: 280 VDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVK 339
Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
+A+ + M G+ N+ ++ I GL K G E M L+
Sbjct: 340 QRRATDAVRLLSSMEERGYH--LNQ----------HIYSVLISGLFKEGKAEEAMSLWRK 387
Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
+ C+ + +++ L+ G C+ G A E+ N++ + + Y+ L+ K G
Sbjct: 388 MAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGL 447
Query: 330 IKKENYLLLSMEENGCALDVDTFNTLM 356
++ + M++ GC+ + ++ L+
Sbjct: 448 CEEAVQVWKEMDKTGCSRNKFCYSVLI 474
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 123/268 (45%), Gaps = 30/268 (11%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
+ A+ S R Y LN ++ LI G EG +A L +KMA GC+PN+
Sbjct: 342 RATDAVRLLSSMEERGYH-LNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVY 400
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
L+ GL R G N +E++N M G + PN + Y SL+ G K L ++ +
Sbjct: 401 SVLVDGLCREGKPNEA----KEILNRMIASGCL--PNAYTYSSLMKGFFKTGLCEEAVQV 454
Query: 123 FMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
+ EM G + N LC ++ EA + M+ G+ P Y+ ++ G C
Sbjct: 455 WKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCG 514
Query: 175 VGKVNVAIALFDSM---ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
+G ++ A+ L+ M PDV +Y++L++G C ++ A+++ M+ G
Sbjct: 515 IGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRG---- 570
Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGH 259
C+ P+ TCN F++ L + +
Sbjct: 571 ------CD--PDVITCNTFLNTLSEKSN 590
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 121/272 (44%), Gaps = 40/272 (14%)
Query: 112 KDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL------------- 158
K L D+ DLF M D+ CK++ + N +L +++ GL
Sbjct: 124 KAHLPDKAVDLFHRMVDE------FRCKRS-VKSFNSVLNVIINEGLYHRGLEFYDYVVN 176
Query: 159 -------NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
+P ++ ++ C + V+ AI +F M + +PD ++Y L++G CK
Sbjct: 177 SNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEE 236
Query: 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271
++EA+ + EM G C+ P + N+ IDGLCK G + V +L +
Sbjct: 237 RIDEAVLLLDEMQSEG----------CSPSPVIY--NVLIDGLCKKGDLTRVTKLVDNMF 284
Query: 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331
+ C +N+LI G C G + A L ++ + + V Y LI+ L K+ +
Sbjct: 285 LKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAT 344
Query: 332 KENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
LL SMEE G L+ ++ L IS L KE
Sbjct: 345 DAVRLLSSMEERGYHLNQHIYSVL-ISGLFKE 375
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 118/254 (46%), Gaps = 26/254 (10%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N V ++ L+ G C EG +A +++ +M GC PN T +L+ G +TG +++
Sbjct: 396 NIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVW 455
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
+EM D G + N FCY LIDGLC V + ++ +M GI +T+
Sbjct: 456 KEM-----DKTGCSR-NKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSII 509
Query: 137 --LCKKTKLVEANRLLELMM---QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
LC + A +L M+ + P + TY LL+G C+ ++ A+ L +SM +
Sbjct: 510 KGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDR 569
Query: 192 GFMPDVFSYSVLINGYCKNFNV-EEAMNVSREMILNGFKK--------IFNEMKLCNVVP 242
G PDV + + +N + N ++ + E+++ K+ I M + P
Sbjct: 570 GCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAP 629
Query: 243 ETFTCNIFIDGLCK 256
+T T + + +CK
Sbjct: 630 KTSTWAMIVREICK 643
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 32/189 (16%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N ++ LI G C G +++A + KM T G +P+ ++I GL G+M+ LKL+
Sbjct: 466 NKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLY 525
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC---- 138
EM + +P+V Y L+DGLC + + + DL M D+G + + + C
Sbjct: 526 HEM---LCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFL 582
Query: 139 -------------------------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
K+ ++ A ++E+M+ + L P T+ ++ C
Sbjct: 583 NTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREIC 642
Query: 174 LVGKVNVAI 182
K+N AI
Sbjct: 643 KPKKINAAI 651
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 176/357 (49%), Gaps = 39/357 (10%)
Query: 9 MAFGSF--IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
+A+G + I R +N T N ++ C +G + + ++ G P++ T +TLI
Sbjct: 218 LAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLI 277
Query: 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
+ G M E++N M G + P V+ Y ++I+GLCK ++ K++F EM
Sbjct: 278 SAYSSKGLMEEAF----ELMNAMPGKG--FSPGVYTYNTVINGLCKHGKYERAKEVFAEM 331
Query: 127 KDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
G++ ++ CKK +VE ++ M R + P + ++ +++ + G +
Sbjct: 332 LRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNL 391
Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------I 224
+ A+ F+S+ G +PD Y++LI GYC+ + AMN+ EM I
Sbjct: 392 DKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTI 451
Query: 225 LNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
L+G K+FNEM + P+++T I IDG CK G++ MELF ++
Sbjct: 452 LHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRI 511
Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332
L V +N+L+ G K G + A E++ + K ++ ++Y+IL++AL +G + +
Sbjct: 512 RLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAE 568
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 176/362 (48%), Gaps = 29/362 (8%)
Query: 11 FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
F +R P + T+ SL+ C +G++ + ++ M + P++ ++++
Sbjct: 328 FAEMLRSGLSP-DSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFT 386
Query: 71 RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130
R+GN++ L N + + G I P+ Y LI G C+ ++ +L EM +G
Sbjct: 387 RSGNLDKALMY----FNSVKEAGLI--PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG 440
Query: 131 -----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182
+ NT+L CK+ L EA++L M +R L P +T T L++G+C +G + A+
Sbjct: 441 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAM 500
Query: 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242
LF M K DV +Y+ L++G+ K +++ A K+I+ +M ++P
Sbjct: 501 ELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA------------KEIWADMVSKEILP 548
Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
+ +I ++ LC GH+ E ++ + N + V I NS+I+G C+ G
Sbjct: 549 TPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFL 608
Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN--GCALDVDTFNTLMISFL 360
K+ + V D ++YN LI+ +E + K L+ MEE G DV T+N+++ F
Sbjct: 609 EKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFC 668
Query: 361 QK 362
++
Sbjct: 669 RQ 670
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 169/369 (45%), Gaps = 39/369 (10%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
ND F+ LI+ + +R+A + + + G ++ C+ LI L R G + L ++
Sbjct: 164 NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223
Query: 83 QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-----NANTL 136
QE+ +G+G NV+ +++ LCKD +++ ++++KG+ NTL
Sbjct: 224 QEISRSGVG-------INVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTL 276
Query: 137 LC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
+ K + EA L+ M +G +P ++TY ++NG C GK A +F M R G
Sbjct: 277 ISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGL 336
Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNV-----SREMI------------------LNGFKK 230
PD +Y L+ CK +V E V SR+++ L+
Sbjct: 337 SPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALM 396
Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
FN +K ++P+ I I G C+ G + M L + C + V +N+++ G C
Sbjct: 397 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLC 456
Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
K + A +LFN+++ + L D ILI K G ++ L M+E LDV
Sbjct: 457 KRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVV 516
Query: 351 TFNTLMISF 359
T+NTL+ F
Sbjct: 517 TYNTLLDGF 525
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 151/352 (42%), Gaps = 29/352 (8%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
ALM F S P ++V + LI+G+C +G I A L +M GC +V T +T++
Sbjct: 394 ALMYFNSVKEAGLIP-DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTIL 452
Query: 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
GL + + KL EM P+ + LIDG CK + +LF +M
Sbjct: 453 HGLCKRKMLGEADKLFNEMTERA------LFPDSYTLTILIDGHCKLGNLQNAMELFQKM 506
Query: 127 KDKGI-----NANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
K+K I NTLL K + A + M+ + + P +Y+ L+N C G +
Sbjct: 507 KEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHL 566
Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
A ++D M K P V + +I GYC++ N + + +MI GF
Sbjct: 567 AEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGF---------- 616
Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF--NSLIRGCCKFGIFE 296
VP+ + N I G + ++ + L +E L ++F NS++ G C+ +
Sbjct: 617 --VPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMK 674
Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348
A + K+ + + D Y +I+ + + + + M + G + D
Sbjct: 675 EAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 137/356 (38%), Gaps = 63/356 (17%)
Query: 44 SQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCY 103
S ++ + G + +C L+ +RR+G L E+VN + N +
Sbjct: 117 SAMIHILVRSGRLSDAQSC--LLRMIRRSGVSRL------EIVNSLDSTFSNCGSNDSVF 168
Query: 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK-------KTKLVE-ANRLLELMMQ 155
LI + R + + + F ++ KG + C + VE A + + + +
Sbjct: 169 DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISR 228
Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
G+ ++T ++N C GK+ + KG PD+ +Y+ LI+ Y +EE
Sbjct: 229 SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEE 288
Query: 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
A + M GF P +T N I+GLCK+G E+F + S
Sbjct: 289 AFELMNAMPGKGFS------------PGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGL 336
Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV--------------------- 314
+ SL+ CK G ++F+ + +++V D+
Sbjct: 337 SPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALM 396
Query: 315 --------------VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
V Y ILI ++G I L M + GCA+DV T+NT++
Sbjct: 397 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTIL 452
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
VSR I+N F+ C F ++ I + + E E F L +
Sbjct: 145 VSRLEIVNSLDSTFSN---CGSNDSVF--DLLIRTYVQARKLREAHEAFTLLRSKGFTVS 199
Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
++ N+LI + G E+A ++ ++S + +V NI+++AL K+G+++K L
Sbjct: 200 IDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLS 259
Query: 339 SMEENGCALDVDTFNTLMISFLQK 362
++E G D+ T+NTL+ ++ K
Sbjct: 260 QVQEKGVYPDIVTYNTLISAYSSK 283
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 189/397 (47%), Gaps = 48/397 (12%)
Query: 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
S LG +M G + P + VTF SLI GFC+ + +A +V +M G +P+V
Sbjct: 126 ASSFLGKMMKLG------FEP-DIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVV 178
Query: 61 TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
T+I L + G++N L L +M N +G +P+V Y SL++GLC
Sbjct: 179 MYTTIIDSLCKNGHVNYALSLFDQMEN----YG--IRPDVVMYTSLVNGLCNSGRWRDAD 232
Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
L M + I + + K+ K ++A L M++ + P IFTYT L+NG+
Sbjct: 233 SLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGF 292
Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------- 223
C+ G V+ A +F M KG PDV +Y+ LING+CK V++AM + EM
Sbjct: 293 CMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNT 352
Query: 224 -----ILNGF---------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
++ GF +++F+ M V P T N+ + LC NG V + + +F
Sbjct: 353 ITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFED 412
Query: 270 L---EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
+ E+ + +N L+ G C G E A +F + + + ++ Y I+I + K
Sbjct: 413 MQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCK 472
Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
G++K L S+ G +V T+ T MIS L +E
Sbjct: 473 AGKVKNAVNLFCSLPSKGVKPNVVTYTT-MISGLFRE 508
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 172/348 (49%), Gaps = 24/348 (6%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
AL F RP + V + SL+ G C G RDA L++ M +P+V T + LI
Sbjct: 196 ALSLFDQMENYGIRP-DVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALI 254
Query: 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
+ G +L+ EM+ PN+F Y SLI+G C + VD+ + +F M
Sbjct: 255 DAFVKEGKFLDAEELYNEMIRMS------IAPNIFTYTSLINGFCMEGCVDEARQMFYLM 308
Query: 127 KDKG----INANTLL----CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
+ KG + A T L CK K+ +A ++ M Q+GL TYT L+ G+ VGK
Sbjct: 309 ETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368
Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238
NVA +F M +G P++ +Y+VL++ C N V++A+ + +M + ++
Sbjct: 369 NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDM---------QKREMD 419
Query: 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298
V P +T N+ + GLC NG + + + +F + ++ + + +I+G CK G + A
Sbjct: 420 GVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNA 479
Query: 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
LF L K + +VV Y +I L +EG + + L M+E+G +
Sbjct: 480 VNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 163/342 (47%), Gaps = 29/342 (8%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
T N L+ FC AS + KM G P++ T +LI G M + M
Sbjct: 109 TCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAM----SM 164
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------L 137
VN M + G KP+V Y ++ID LCK+ V+ LF +M++ GI + + L
Sbjct: 165 VNQMVEMG--IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGL 222
Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
C + +A+ LL M +R + P + T+ L++ + GK A L++ M R P++
Sbjct: 223 CNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNI 282
Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
F+Y+ LING+C V+EA +++F M+ P+ I+G CK
Sbjct: 283 FTYTSLINGFCMEGCVDEA------------RQMFYLMETKGCFPDVVAYTSLINGFCKC 330
Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
V + M++F + + +LI+G + G +A E+F+ + + + ++ Y
Sbjct: 331 KKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTY 390
Query: 318 NILIHALGKEGQIKKENYLLLSMEE---NGCALDVDTFNTLM 356
N+L+H L G++KK + M++ +G A ++ T+N L+
Sbjct: 391 NVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLL 432
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 47/250 (18%)
Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS----------------- 187
EA L M++ P I +T LLN + K +V I L D
Sbjct: 55 EALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLM 114
Query: 188 ------------------MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229
M + GF PD+ +++ LING+C +EEAM++ +M+ G K
Sbjct: 115 NCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIK 174
Query: 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289
P+ ID LCKNGHV + LF +E V ++ SL+ G
Sbjct: 175 ------------PDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGL 222
Query: 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349
C G + A L ++ + + DV+ +N LI A KEG+ L M A ++
Sbjct: 223 CNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNI 282
Query: 350 DTFNTLMISF 359
T+ +L+ F
Sbjct: 283 FTYTSLINGF 292
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 173/364 (47%), Gaps = 36/364 (9%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N T+N ++ G+C GN+ +A+Q V K+ G P+ T +LI G + +++ K+
Sbjct: 217 NIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVF 276
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD----KGINANTLL- 137
EM G + N Y LI GLC R +D+ DLF++MKD + T+L
Sbjct: 277 NEM-----PLKGCRR-NEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLI 330
Query: 138 ---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
C + EA L++ M + G+ P I TYT L++ C K A L M KG M
Sbjct: 331 KSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLM 390
Query: 195 PDVFSYSVLINGYCKNFNVEEAMNV-----SREM---------ILNGFKK--------IF 232
P+V +Y+ LINGYCK +E+A++V SR++ ++ G+ K +
Sbjct: 391 PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVL 450
Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
N+M V+P+ T N IDG C++G+ L + + S+I CK
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKS 510
Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
E A +LF+ L K + +VV Y LI K G++ + + +L M C + TF
Sbjct: 511 KRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570
Query: 353 NTLM 356
N L+
Sbjct: 571 NALI 574
Score = 131 bits (329), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 155/351 (44%), Gaps = 51/351 (14%)
Query: 11 FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70
G + + P N +T+N+LI G+C G I DA +V+ M + PN T + LI G
Sbjct: 381 LGQMLEKGLMP-NVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC 439
Query: 71 RTGNMNLTLKLHQEM--VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
++ +H+ M +N M + + P+V Y SLIDG C+ D
Sbjct: 440 KSN-------VHKAMGVLNKMLERKVL--PDVVTYNSLIDGQCRSGNFDS---------- 480
Query: 129 KGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188
A RLL LM RGL P +TYT +++ C +V A LFDS+
Sbjct: 481 -----------------AYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523
Query: 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248
+KG P+V Y+ LI+GYCK V+EA + +M+ N +P + T N
Sbjct: 524 EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSK------------NCLPNSLTFN 571
Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
I GLC +G + E L + + V LI K G F+ A F ++
Sbjct: 572 ALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS 631
Query: 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
D Y I +EG++ ++ M ENG + D+ T+++L+ +
Sbjct: 632 GTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGY 682
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 177/410 (43%), Gaps = 65/410 (15%)
Query: 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
+ +V A F S ++ P N V + +LI G+C G + +A +++KM + C PN
Sbjct: 510 SKRVEEACDLFDSLEQKGVNP-NVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSL 568
Query: 61 TCDTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119
T + LI GL G + L ++MV G+ +P V LI L KD D
Sbjct: 569 TFNALIHGLCADGKLKEATLLEEKMVKIGL-------QPTVSTDTILIHRLLKDGDFDHA 621
Query: 120 KDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
F +M G + C++ +L++A ++ M + G++P +FTY+ L+ G
Sbjct: 622 YSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKG 681
Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING-----YCKNFNVE-EAMNVSREMIL 225
Y +G+ N A + M G P ++ LI Y K E E +S M
Sbjct: 682 YGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEF 741
Query: 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE----ISNCELFVEI 281
+ ++ +M +V P + I G+C+ G++ ++F ++ IS EL +
Sbjct: 742 DTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSEL---V 798
Query: 282 FNSLIRGCCKFGIFEIASELFNKL----------SCKNLV-------------------- 311
FN+L+ CCK A+++ + + SCK L+
Sbjct: 799 FNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLL 858
Query: 312 -----ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
D +A+ I+I +GK+G ++ L ME+NGC T++ L+
Sbjct: 859 QCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLI 908
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 122/287 (42%), Gaps = 50/287 (17%)
Query: 96 YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ 155
YK + CY +L++ L + LVD+ K ++MEM ++
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEM---------------------------LE 211
Query: 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215
+ P I+TY ++NGYC +G V A + G PD F+Y+ LI GYC+ +++
Sbjct: 212 DKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDS 271
Query: 216 AMNVSREMILNGFKK-----------------------IFNEMKLCNVVPETFTCNIFID 252
A V EM L G ++ +F +MK P T + I
Sbjct: 272 AFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIK 331
Query: 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312
LC + E + L +E + + + + LI C FE A EL ++ K L+
Sbjct: 332 SLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMP 391
Query: 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
+V+ YN LI+ K G I+ ++ ME + + T+N L+ +
Sbjct: 392 NVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGY 438
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 136/345 (39%), Gaps = 79/345 (22%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N +TFN+LI G C +G +++A+ L +KM G +P V+T LI L + G+ +
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRF 625
Query: 83 QEMVN-GMGDFGGIY----------------------------KPNVFCYGSLIDGLCKD 113
Q+M++ G Y P++F Y SLI G
Sbjct: 626 QQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDL 685
Query: 114 RLVDQTKDLFMEMKDKGINANTL-----------------------LCKKTKLVEAN--- 147
+ D+ M+D G + LC + ++E +
Sbjct: 686 GQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVV 745
Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR-KGFMPDVFSYSVLING 206
LLE M++ + P +Y L+ G C VG + VA +FD M R +G P ++ L++
Sbjct: 746 ELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSC 805
Query: 207 YCKNFNVEEAMNVSREMILNG---------------FKK--------IFNEMKLCNVVPE 243
CK EA V +MI G +KK +F + C +
Sbjct: 806 CCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYED 865
Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288
I IDG+ K G V ELF +E + C+ + ++ LI G
Sbjct: 866 ELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/88 (18%), Positives = 47/88 (53%)
Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
+L + +N+L+ +FG+ + +++ ++ + ++ YN +++ K G +++ N
Sbjct: 180 KLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQ 239
Query: 336 LLLSMEENGCALDVDTFNTLMISFLQKE 363
+ + E G D T+ +L++ + Q++
Sbjct: 240 YVSKIVEAGLDPDFFTYTSLIMGYCQRK 267
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 171/366 (46%), Gaps = 38/366 (10%)
Query: 22 LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
++ T+ +++KG C G++ A +VK+M GCRPNV TLI + +++
Sbjct: 415 ISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRV 474
Query: 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
+EM GI P++FCY SLI GL K + +D+ + +EM + G+ N
Sbjct: 475 LKEMKE-----QGI-APDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF 528
Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
+ ++ A++ ++ M + G+ P T L+N YC GKV A + + SM +G
Sbjct: 529 ISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGI 588
Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK--------- 230
+ D +Y+VL+NG KN V++A + REM ++NGF K
Sbjct: 589 LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASS 648
Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
IF+EM + P N+ + G C++G + + EL + + + ++I G C
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708
Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
K G A LF+++ K LV D Y L+ + +++ + + GCA
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA-ITIFGTNKKGCASSTA 767
Query: 351 TFNTLM 356
FN L+
Sbjct: 768 PFNALI 773
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 175/386 (45%), Gaps = 45/386 (11%)
Query: 15 IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
+R C N V LI +C +G + +A + M G + T L+ GL +
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607
Query: 75 MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134
++ ++ +EM G G P+VF YG LI+G K + + +F EM ++G+ N
Sbjct: 608 VDDAEEIFREM-RGKG-----IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661
Query: 135 TLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
++ C+ ++ +A LL+ M +GL+P TY +++GYC G + A LFD
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721
Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV---------SREMILNG-------FKK 230
M KG +PD F Y+ L++G C+ +VE A+ + S N F K
Sbjct: 722 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGK 781
Query: 231 IFNEMKLCNVV----------PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
+ ++ N + P T NI ID LCK G++ ELF ++ +N V
Sbjct: 782 TELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVI 841
Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
+ SL+ G K G +F++ + D + Y+++I+A KEG K L+ M
Sbjct: 842 TYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQM 901
Query: 341 -----EENGCALDVDTFNTLMISFLQ 361
++GC L + T L+ F +
Sbjct: 902 FAKNAVDDGCKLSISTCRALLSGFAK 927
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 155/388 (39%), Gaps = 87/388 (22%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
KV+ A A+ S + + L D T+ L+ G + DA ++ ++M G P+V +
Sbjct: 572 KVIEACSAYRSMVDQGI--LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFS 629
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVN-GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
LI G + GNM + EMV G+ PNV Y L+ G C+ +++ K
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGL-------TPNVIIYNMLLGGFCRSGEIEKAK 682
Query: 121 DLFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
+L EM KG++ N + CK L EA RL + M +GL P F YT L++G
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742
Query: 173 CLVGKVNVAIALFD---------------------------------------SMARKGF 193
C + V AI +F S R G
Sbjct: 743 CRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG- 801
Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK--------- 230
P+ +Y+++I+ CK N+E A + +M +LNG+ K
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861
Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-----CELFVEIFNSL 285
+F+E + P+ ++ I+ K G + + L + N C+L + +L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921
Query: 286 IRGCCKFGIFEIASELFNKLSCKNLVAD 313
+ G K G E+A ++ + + D
Sbjct: 922 LSGFAKVGEMEVAEKVMENMVRLQYIPD 949
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 147/348 (42%), Gaps = 48/348 (13%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
T++ LI C GN++ + K F T T N++ LKL + M
Sbjct: 223 TYHMLIIAHCRAGNVQ-----LGKDVLFKTEKEFRTA---------TLNVDGALKLKESM 268
Query: 86 V-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
+ G+ P + Y LIDGLCK + ++ K L +EM G++ +
Sbjct: 269 ICKGL-------VPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV---AIALFDSMARKGF 193
L K A L+ M+ G+N + Y + C++ K V A ALFD M G
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCI---CVMSKEGVMEKAKALFDGMIASGL 378
Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
+P +Y+ LI GYC+ NV + ++ EMK N+V +T + G
Sbjct: 379 IPQAQAYASLIEGYCREKNVRQGY------------ELLVEMKKRNIVISPYTYGTVVKG 426
Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
+C +G + + + S C V I+ +LI+ + F A + ++ + + D
Sbjct: 427 MCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486
Query: 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
+ YN LI L K ++ + L+ M ENG + T+ + +++
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIE 534
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/373 (23%), Positives = 156/373 (41%), Gaps = 40/373 (10%)
Query: 13 SFIRRCYRPL-----NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
S I RC + + V F L G+ +G I +A + P ++ C L+
Sbjct: 135 SSIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLD 194
Query: 68 GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
L R ++L +++ MV F +V Y LI C+ V KD+ +
Sbjct: 195 ALLRWNRLDLFWDVYKGMVERNVVF------DVKTYHMLIIAHCRAGNVQLGKDVLFKT- 247
Query: 128 DKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
+K TL + A +L E M+ +GL P+ +TY L++G C + ++ A +L
Sbjct: 248 EKEFRTATL-----NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVE 302
Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------------------- 228
M G D +YS+LI+G K N + A + EM+ +G
Sbjct: 303 MDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGV 362
Query: 229 ----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
K +F+ M ++P+ I+G C+ +V + EL ++ N + + +
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422
Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
+++G C G + A + ++ +VV Y LI + + +L M+E G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482
Query: 345 CALDVDTFNTLMI 357
A D+ +N+L+I
Sbjct: 483 IAPDIFCYNSLII 495
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 31/211 (14%)
Query: 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
++VL LM GSF R + NDVT+N +I C EGN+ A +L +M P V T
Sbjct: 786 TEVLNRLMD-GSFDR--FGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVIT 842
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
+L+ G + G + E + GI +P+ Y +I+ K+ + +
Sbjct: 843 YTSLLNGYDKMGRRAEMFPVFDEAIAA-----GI-EPDHIMYSVIINAFLKEGMTTKALV 896
Query: 122 LFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181
L +M K NA CK + I T LL+G+ VG++ VA
Sbjct: 897 LVDQMFAK--NAVDDGCKLS--------------------ISTCRALLSGFAKVGEMEVA 934
Query: 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFN 212
+ ++M R ++PD + LIN C + N
Sbjct: 935 EKVMENMVRLQYIPDSATVIELINESCISSN 965
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 176/370 (47%), Gaps = 39/370 (10%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
AL G ++ + P + VTF SL+ GFC +A LV ++ G PNV +T+I
Sbjct: 133 ALSCLGKMMKLGFEP-SIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTII 191
Query: 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
L G +N L + + M MG +P+V Y SLI L + + +M
Sbjct: 192 DSLCEKGQVNTALDVLKHM-KKMG-----IRPDVVTYNSLITRLFHSGTWGVSARILSDM 245
Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
GI+ + + K+ +L+EA + M+QR +NP I TY L+NG C+ G +
Sbjct: 246 MRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLL 305
Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV----SREMI---------- 224
+ A + + + KGF P+ +Y+ LINGYCK V++ M + SR+ +
Sbjct: 306 DEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTL 365
Query: 225 ---------LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
+ +K+ M C V P+ +T NI +DGLC +G + + + L+ S
Sbjct: 366 YQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKT 425
Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335
+ + +N +I+G CK E A LF L+ K + DV+ Y ++ L ++ ++ +
Sbjct: 426 VVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHE 485
Query: 336 LLLSME-ENG 344
L M+ E+G
Sbjct: 486 LYRKMQKEDG 495
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 159/339 (46%), Gaps = 26/339 (7%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
+F +LI FC + A + KM G P++ T +L+ G + L ++
Sbjct: 116 SFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQI 175
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK--TKL 143
V G+G Y+PNV Y ++ID LC+ V+ D+ MK GI + + T+L
Sbjct: 176 V-GLG-----YEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRL 229
Query: 144 VEAN------RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
+ R+L MM+ G++P + T++ L++ Y G++ A ++ M ++ P++
Sbjct: 230 FHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNI 289
Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
+Y+ LING C + ++EA V ++ GF P T N I+G CK
Sbjct: 290 VTYNSLINGLCIHGLLDEAKKVLNVLVSKGF------------FPNAVTYNTLINGYCKA 337
Query: 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317
V + M++ + + +N+L +G C+ G F A ++ ++ + D+ +
Sbjct: 338 KRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTF 397
Query: 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
NIL+ L G+I K L ++++ + + T+N ++
Sbjct: 398 NILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIII 436
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 31/295 (10%)
Query: 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN-----TLL---CKKTKLVEANRL 149
P++ + L+ + K + LF ++ GI+ + TL+ C+ +L A
Sbjct: 77 PSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSC 136
Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
L MM+ G P I T+ L+NG+C V + A++L D + G+ P+V Y+ +I+ C+
Sbjct: 137 LGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 196
Query: 210 NFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPETFT 246
V A++V + M G + +I ++M + P+ T
Sbjct: 197 KGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVIT 256
Query: 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306
+ ID K G +LE + + + + + +NSLI G C G+ + A ++ N L
Sbjct: 257 FSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLV 316
Query: 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
K + V YN LI+ K ++ +L M +G D T+NTL + Q
Sbjct: 317 SKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQ 371
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 170/378 (44%), Gaps = 38/378 (10%)
Query: 16 RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
+R P N+VT+N+LI GF EG + ASQL+ +M +FG PN T + LI G GN
Sbjct: 291 KRMIHP-NEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 349
Query: 76 NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135
LK+ M+ G P+ YG L+DGLCK+ D + +M MK G+
Sbjct: 350 KEALKMFY-MMEAKG-----LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGR 403
Query: 136 L--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187
+ LCK L EA LL M + G++P I TY+ L+NG+C VG+ A +
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCR 463
Query: 188 MARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK---IFNEM--KLCN--- 239
+ R G P+ YS LI C+ ++EA+ + MIL G + FN + LC
Sbjct: 464 IYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK 523
Query: 240 ---------------VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS 284
++P T + + I+G +G L+ +F + + S
Sbjct: 524 VAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGS 583
Query: 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
L++G CK G A + L D V YN L+ A+ K G + K L M +
Sbjct: 584 LLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRS 643
Query: 345 CALDVDTFNTLMISFLQK 362
D T+ +L+ +K
Sbjct: 644 ILPDSYTYTSLISGLCRK 661
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 156/343 (45%), Gaps = 26/343 (7%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
TFN LI C EG+ +S L++KM G P + T +T++ + G ++L
Sbjct: 194 ATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 253
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
M + D +V Y LI LC+ + + L +M+ + I+ N +
Sbjct: 254 MKSKGVD------ADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLING 307
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
+ K++ A++LL M+ GL+P T+ L++G+ G A+ +F M KG P
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS 367
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
SY VL++G CKN + A GF + MK V T IDGLCK
Sbjct: 368 EVSYGVLLDGLCKNAEFDLA---------RGF---YMRMKRNGVCVGRITYTGMIDGLCK 415
Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
NG + E + L + + + +++LI G CK G F+ A E+ ++ L + +
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGII 475
Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
Y+ LI+ + G +K+ + +M G D TFN L+ S
Sbjct: 476 YSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSL 518
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 157/371 (42%), Gaps = 38/371 (10%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
+T+ +I G C G + +A L+ +M+ G P++ T LI G + G K +E
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGR----FKTAKE 459
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN--------TL 136
+V + G PN Y +LI C+ + + ++ M +G + T
Sbjct: 460 IVCRIYRVG--LSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTS 517
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
LCK K+ EA + M G+ P ++ L+NGY G+ A ++FD M + G P
Sbjct: 518 LCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPT 577
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFKK---------IFN 233
F+Y L+ G CK ++ EA + + +L K +F
Sbjct: 578 FFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFG 637
Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI-FNSLIRGCCKF 292
EM +++P+++T I GLC+ G + + E L ++ + + G K
Sbjct: 638 EMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKA 697
Query: 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352
G ++ ++ D+V N +I + G+I+K N LL M ++ T+
Sbjct: 698 GQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTY 757
Query: 353 NTLMISFLQKE 363
N L+ + +++
Sbjct: 758 NILLHGYSKRK 768
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 154/382 (40%), Gaps = 65/382 (17%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
TFN L+ C G + +A + ++ M + G PN + D LI G +G + EM
Sbjct: 510 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 569
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLL--- 137
+G + P F YGSL+ GLCK + + + + + NTLL
Sbjct: 570 TK-VG-----HHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAM 623
Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF--DSMARKGFMP 195
CK L +A L M+QR + P +TYT L++G C GK +AI LF ++ AR +P
Sbjct: 624 CKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAI-LFAKEAEARGNVLP 682
Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255
+ Y+ ++G K + + +M G P+ T N IDG
Sbjct: 683 NKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGH------------TPDIVTTNAMIDGYS 730
Query: 256 KNGHVLEVMELFPTLEISNCELFVEIFN-------------------------------- 283
+ G + + +L P + N + +N
Sbjct: 731 RMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKL 790
Query: 284 ---SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
SL+ G C+ + EI ++ C+ + D +N+LI G+I L+ M
Sbjct: 791 TCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVM 850
Query: 341 EENGCALDVDTFNTLMISFLQK 362
G +LD DT + M+S L +
Sbjct: 851 TSLGISLDKDTCDA-MVSVLNR 871
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 154/355 (43%), Gaps = 36/355 (10%)
Query: 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64
L A F + + P T+ SL+KG C G++R+A + +K + + +T
Sbjct: 560 LKAFSVFDEMTKVGHHP-TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNT 618
Query: 65 LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
L+T + ++GN+ + L EMV P+ + Y SLI GLC+ +T +
Sbjct: 619 LLTAMCKSGNLAKAVSLFGEMVQRS------ILPDSYTYTSLISGLCRK---GKTVIAIL 669
Query: 125 EMKDKGINANTL------------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
K+ N L + K + E M G P I T +++GY
Sbjct: 670 FAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGY 729
Query: 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232
+GK+ L M + P++ +Y++L++GY K +V + + R +ILNG
Sbjct: 730 SRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNG----- 784
Query: 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEV-MELFPTLEISNCELFVEIFNSLIRGCCK 291
++P+ TC+ + G+C++ ++LE+ +++ E+ FN LI CC
Sbjct: 785 -------ILPDKLTCHSLVLGICES-NMLEIGLKILKAFICRGVEVDRYTFNMLISKCCA 836
Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346
G A +L ++ + D + ++ L + + ++ +L M + G +
Sbjct: 837 NGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGIS 891
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 142/313 (45%), Gaps = 32/313 (10%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N T+N L+ G+ ++ + L + + G P+ TC +L+ G+ + + + LK+
Sbjct: 753 NLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKIL 812
Query: 83 QEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------- 134
+ + G+ + + + + LI C + ++ DL M GI+ +
Sbjct: 813 KAFICRGV-------EVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAM 865
Query: 135 -TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
++L + + E+ +L M ++G++P Y L+NG C VG + A + + M
Sbjct: 866 VSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKI 925
Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
P + S ++ K +EA + R M+ +MKL VP + +
Sbjct: 926 CPPNVAESAMVRALAKCGKADEATLLLRFML---------KMKL---VPTIASFTTLMHL 973
Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLV 311
CKNG+V+E +EL + +SNC L +++ +N LI G C G +A EL+ ++ +
Sbjct: 974 CCKNGNVIEALEL--RVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFL 1031
Query: 312 ADVVAYNILIHAL 324
A+ Y LI L
Sbjct: 1032 ANATTYKALIRGL 1044
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/393 (23%), Positives = 151/393 (38%), Gaps = 79/393 (20%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N V + + G G + ++M G P++ T + +I G R G + T L
Sbjct: 683 NKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLL 742
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142
EM N G PN+ Y L+ G K + V + L+ + GI + L C
Sbjct: 743 PEMGNQNGG------PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLV 796
Query: 143 L--VEAN------RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL---------- 184
L E+N ++L+ + RG+ +T+ L++ C G++N A L
Sbjct: 797 LGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGIS 856
Query: 185 -------------------------FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219
M+++G P+ Y LING C+ +++ A V
Sbjct: 857 LDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVV 916
Query: 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV---------MELFPTL 270
EMI + K+C P + + L K G E M+L PT
Sbjct: 917 KEEMIAH---------KIC---PPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPT- 963
Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
+ F +L+ CCK G A EL +S L D+V+YN+LI L +G +
Sbjct: 964 --------IASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDM 1015
Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
L M+ +G + T+ L+ L +E
Sbjct: 1016 ALAFELYEEMKGDGFLANATTYKALIRGLLARE 1048
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 14/201 (6%)
Query: 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218
NP + Y L+ Y G + ++ +F M GF P V++ + ++ K+ +
Sbjct: 122 NPSV--YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWS 179
Query: 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278
+EM+ + K+C P+ T NI I+ LC G + L +E S
Sbjct: 180 FLKEML---------KRKIC---PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPT 227
Query: 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338
+ +N+++ CK G F+ A EL + + K + ADV YN+LIH L + +I K LL
Sbjct: 228 IVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLR 287
Query: 339 SMEENGCALDVDTFNTLMISF 359
M + + T+NTL+ F
Sbjct: 288 DMRKRMIHPNEVTYNTLINGF 308
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 95/242 (39%), Gaps = 46/242 (19%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
K+L A + G + R TFN LI C G I A LVK M + G + TC
Sbjct: 810 KILKAFICRGVEVDR-------YTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTC 862
Query: 63 DTLITGLRRTGNMNLTLKLHQEM---------------VNGMGDFGGIY----------- 96
D +++ L R + + EM +NG+ G I
Sbjct: 863 DAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIA 922
Query: 97 ----KPNVFCYGSLIDGLCKDRLVDQTKDLF-----MEMKDKGINANTLL---CKKTKLV 144
PNV +++ L K D+ L M++ + TL+ CK ++
Sbjct: 923 HKICPPNV-AESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVI 981
Query: 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204
EA L +M GL + +Y L+ G C G + +A L++ M GF+ + +Y LI
Sbjct: 982 EALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALI 1041
Query: 205 NG 206
G
Sbjct: 1042 RG 1043
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
F + +LCN P + +I I + G + + +E+F + + V N+++
Sbjct: 109 FGALMTTYRLCNSNPSVY--DILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILG 166
Query: 288 GCCKFG----IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
K G ++ E+ + C DV +NILI+ L EG +K +YL+ ME++
Sbjct: 167 SVVKSGEDVSVWSFLKEMLKRKIC----PDVATFNILINVLCAEGSFEKSSYLMQKMEKS 222
Query: 344 GCALDVDTFNTLMISFLQK 362
G A + T+NT++ + +K
Sbjct: 223 GYAPTIVTYNTVLHWYCKK 241
Score = 35.0 bits (79), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 18 CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69
C L+ V++N LI G C +G++ A +L ++M G N TT LI GL
Sbjct: 993 CGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGL 1044
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 171/364 (46%), Gaps = 32/364 (8%)
Query: 11 FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG-- 68
+ IRR +P N TFN +I C G + A +++ M +GC PNV + +TLI G
Sbjct: 211 YKEMIRRKIQP-NVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYC 269
Query: 69 -LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
L G M + +EMV PN+ + LIDG KD + + +F EM
Sbjct: 270 KLGGNGKMYKADAVLKEMVE------NDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEML 323
Query: 128 DKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
D+ + N + LC K+ EA + + M+ G+ P + TY L+NG+C +
Sbjct: 324 DQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLK 383
Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239
A+ +F S+ +G +P Y++LI+ YCK +++ + EM G
Sbjct: 384 EALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG------------ 431
Query: 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIAS 299
+VP+ T N I GLC+NG++ +LF L V F+ L+ G C+ G A+
Sbjct: 432 IVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLV-TFHILMEGYCRKGESRKAA 490
Query: 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME-ENGCALDVDTFNTLMIS 358
L ++S L + YNI++ KEG +K + ME E ++V ++N L+
Sbjct: 491 MLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQG 550
Query: 359 FLQK 362
+ QK
Sbjct: 551 YSQK 554
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 166/334 (49%), Gaps = 31/334 (9%)
Query: 23 NDVTFNSLIKGFCM---EGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
N V++N+LI G+C G + A ++K+M PN+TT + LI G + N+ ++
Sbjct: 257 NVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSM 316
Query: 80 KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
K+ +EM++ KPNV Y SLI+GLC + + + +M G+ N +
Sbjct: 317 KVFKEMLDQ------DVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYN 370
Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
CK L EA + + +G P Y L++ YC +GK++ AL + M R+
Sbjct: 371 ALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMERE 430
Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
G +PDV +Y+ LI G C+N N+E A KK+F+++ +P+ T +I +
Sbjct: 431 GIVPDVGTYNCLIAGLCRNGNIEAA------------KKLFDQLT-SKGLPDLVTFHILM 477
Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC-KNL 310
+G C+ G + L + + +N +++G CK G + A+ + ++ + L
Sbjct: 478 EGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRL 537
Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENG 344
+V +YN+L+ ++G+++ N LL M E G
Sbjct: 538 RMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKG 571
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 173/366 (47%), Gaps = 36/366 (9%)
Query: 9 MAFGSFIRRCYR--PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
+ F +F R Y L+ ++ L+ E D + K+M +PNV T + +I
Sbjct: 171 LGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVI 230
Query: 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIY--KPNVFCYGSLIDGLCK---DRLVDQTKD 121
L +TG MN + ++M +Y PNV Y +LIDG CK + + +
Sbjct: 231 NALCKTGKMNKARDVMEDM--------KVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADA 282
Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
+ EM + ++ N K L + ++ + M+ + + P + +Y L+NG C
Sbjct: 283 VLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLC 342
Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
GK++ AI++ D M G P++ +Y+ LING+CKN ++EA++ +F
Sbjct: 343 NGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALD------------MFG 390
Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
+K VP T N+ ID CK G + + L +E V +N LI G C+ G
Sbjct: 391 SVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNG 450
Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
E A +LF++L+ K L D+V ++IL+ ++G+ +K LL M + G T+N
Sbjct: 451 NIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYN 509
Query: 354 TLMISF 359
+M +
Sbjct: 510 IVMKGY 515
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 17/206 (8%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
AL FGS + P + +N LI +C G I D L ++M G P+V T + LI
Sbjct: 385 ALDMFGSVKGQGAVPTTRM-YNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLI 443
Query: 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
GL R GN+ KL ++ + G+ P++ + L++G C+ + L EM
Sbjct: 444 AGLCRNGNIEAAKKLFDQLTSK-----GL--PDLVTFHILMEGYCRKGESRKAAMLLKEM 496
Query: 127 KDKGINANTL--------LCKKTKLVEA-NRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
G+ L CK+ L A N ++ +R L + +Y LL GY GK
Sbjct: 497 SKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGK 556
Query: 178 VNVAIALFDSMARKGFMPDVFSYSVL 203
+ A L + M KG +P+ +Y ++
Sbjct: 557 LEDANMLLNEMLEKGLVPNRITYEIV 582
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 163/343 (47%), Gaps = 26/343 (7%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
VT+N++++ C G ++ A +++ +M C P+V T LI R + +KL E
Sbjct: 205 VTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDE 264
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
M D G P+V Y L++G+CK+ +D+ +M G N +
Sbjct: 265 MR----DRG--CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRS 318
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
+C + ++A +LL M+++G +P + T+ L+N C G + AI + + M + G P+
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
SY+ L++G+CK ++ A+ M+ G P+ T N + LCK
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMVSRG------------CYPDIVTYNTMLTALCK 426
Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
+G V + +E+ L C + +N++I G K G A +L +++ K+L D +
Sbjct: 427 DGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTIT 486
Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
Y+ L+ L +EG++ + E G + TFN++M+
Sbjct: 487 YSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGL 529
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 154/343 (44%), Gaps = 23/343 (6%)
Query: 22 LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
L DV N+ ++ G + + + ++ M G P++ C TLI G R G K+
Sbjct: 100 LEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKI 159
Query: 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLF--MEMKDKGINANTLL-- 137
E++ G G P+V Y +I G CK ++ + M + + NT+L
Sbjct: 160 -LEILEGSGAV-----PDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRS 213
Query: 138 -CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
C KL +A +L+ M+QR P + TYT L+ C V A+ L D M +G PD
Sbjct: 214 LCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPD 273
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
V +Y+VL+NG CK ++EA+ K N+M P T NI + +C
Sbjct: 274 VVTYNVLVNGICKEGRLDEAI------------KFLNDMPSSGCQPNVITHNIILRSMCS 321
Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
G ++ +L + V FN LI C+ G+ A ++ K+ + ++
Sbjct: 322 TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLS 381
Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
YN L+H KE ++ + L M GC D+ T+NT++ +
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 165/354 (46%), Gaps = 41/354 (11%)
Query: 16 RRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75
R CY + +T+ LI+ C + + A +L+ +M GC P+V T + L+ G+ + G +
Sbjct: 233 RDCYPDV--ITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290
Query: 76 NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINAN 134
+ +K +N M G +PNV + ++ +C R +D K L +M KG + +
Sbjct: 291 DEAIKF----LNDMPSSG--CQPNVITHNIILRSMCSTGRWMDAEK-LLADMLRKGFSPS 343
Query: 135 TL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
+ LC+K L A +LE M Q G P +Y PLL+G+C K++ AI +
Sbjct: 344 VVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403
Query: 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGFK--- 229
M +G PD+ +Y+ ++ CK+ VE+A+ + ++ +++G
Sbjct: 404 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463
Query: 230 ------KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
K+ +EM+ ++ P+T T + + GL + G V E ++ F E FN
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFN 523
Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
S++ G CK + A + + + + +Y ILI L EG K+ LL
Sbjct: 524 SIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELL 577
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 141/332 (42%), Gaps = 49/332 (14%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
VT+N L+ G C EG + +A + + M + GC+PNV T + ++ + TG KL +
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLAD 334
Query: 85 MVNG------------------MGDFGGIY-----------KPNVFCYGSLIDGLCKDRL 115
M+ G G +PN Y L+ G CK++
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK 394
Query: 116 VDQTKDLFMEMKDKG-----INANTLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTP 167
+D+ + M +G + NT+L CK K+ +A +L + +G +PV+ TY
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454
Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227
+++G GK AI L D M K PD +YS L+ G + V+EA+
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI---------- 504
Query: 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287
K F+E + + P T N + GLCK+ ++ + C+ + LI
Sbjct: 505 --KFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIE 562
Query: 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
G G+ + A EL N+L K L+ A +
Sbjct: 563 GLAYEGMAKEALELLNELCNKGLMKKSSAEQV 594
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 50/273 (18%)
Query: 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60
T + + A +R+ + P + VTFN LI C +G + A +++KM GC+PN
Sbjct: 322 TGRWMDAEKLLADMLRKGFSP-SVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380
Query: 61 TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTK 120
+ + L+ G + M+ ++ + MV+ G Y P++ Y +++ LCKD V+
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSR-----GCY-PDIVTYNTMLTALCKDGKVEDAV 434
Query: 121 DLFMEMKDKG-----INANTL---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172
++ ++ KG I NT+ L K K +A +LL+ M + L P TY+ L+ G
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGL 494
Query: 173 CLVGKVNVAIALFDSMARKGFMPDVF---------------------------------- 198
GKV+ AI F R G P+
Sbjct: 495 SREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNE 554
Query: 199 -SYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230
SY++LI G +EA+ + E+ G K
Sbjct: 555 TSYTILIEGLAYEGMAKEALELLNELCNKGLMK 587
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 153/299 (51%), Gaps = 26/299 (8%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
+ VTF LI G+C G+++DA ++ M GC PNV T TLI GL + G+++
Sbjct: 420 DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSA---- 475
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
E+++ M G +PN+F Y S+++GLCK +++ L E + G+NA+T+
Sbjct: 476 NELLHEMWKIG--LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 533
Query: 137 --LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
CK ++ +A +L+ M+ +GL P I T+ L+NG+CL G + L + M KG
Sbjct: 534 DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIA 593
Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
P+ +++ L+ YC N++ A + ++M G V P+ T + G
Sbjct: 594 PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG------------VGPDGKTYENLVKGH 641
Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
CK ++ E LF ++ + V ++ LI+G K F A E+F+++ + L AD
Sbjct: 642 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 164/349 (46%), Gaps = 27/349 (7%)
Query: 19 YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78
Y P + +++++++ G+C G + +L++ M G +PN ++I L R +
Sbjct: 277 YTP-DVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335
Query: 79 LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-- 136
+ EM+ GI P+ Y +LIDG CK + F EM + I + L
Sbjct: 336 EEAFSEMIR-----QGIL-PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY 389
Query: 137 ------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190
C+ +VEA +L M +GL P T+T L+NGYC G + A + + M +
Sbjct: 390 TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ 449
Query: 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250
G P+V +Y+ LI+G CK +++ A + EM G + P FT N
Sbjct: 450 AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ------------PNIFTYNSI 497
Query: 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310
++GLCK+G++ E ++L E + + +L+ CK G + A E+ ++ K L
Sbjct: 498 VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557
Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
+V +N+L++ G ++ LL M G A + TFN+L+ +
Sbjct: 558 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 170/372 (45%), Gaps = 33/372 (8%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
K+ A AF IR+ P + V + +LI GFC G+IR AS+ +M + P+V T
Sbjct: 331 KLAEAEEAFSEMIRQGILP-DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY 389
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
+I+G + G+M KL EM F +P+ + LI+G CK KD
Sbjct: 390 TAIISGFCQIGDMVEAGKLFHEM------FCKGLEPDSVTFTELINGYCK---AGHMKDA 440
Query: 123 FM---EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171
F M G + N + LCK+ L AN LL M + GL P IFTY ++NG
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 500
Query: 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231
C G + A+ L G D +Y+ L++ YCK+ +++A + +EM+ G +
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ-- 558
Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
P T N+ ++G C +G + + +L + FNSL++ C
Sbjct: 559 ----------PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI 608
Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
+ A+ ++ + + + D Y L+ K +K+ +L M+ G ++ V T
Sbjct: 609 RNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST 668
Query: 352 FNTLMISFLQKE 363
++ L+ FL+++
Sbjct: 669 YSVLIKGFLKRK 680
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 165/383 (43%), Gaps = 61/383 (15%)
Query: 38 GNIRDASQLVKKMATFGCRPNVTTCDTLITGLR----RTGNMNLTLKLHQE--------- 84
G +R+A ++ +KM +G +V +C+ +T L +T + + E
Sbjct: 189 GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVAS 248
Query: 85 ---MVNGMGDFGGI--------------YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127
+++ + G I Y P+V Y ++++G C+ +D+ L MK
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 308
Query: 128 DKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179
KG+ N+ LLC+ KL EA M+++G+ P YT L++G+C G +
Sbjct: 309 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 368
Query: 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------IL 225
A F M + PDV +Y+ +I+G+C+ ++ EA + EM ++
Sbjct: 369 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 428
Query: 226 NGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
NG+ K + N M P T IDGLCK G + EL + +
Sbjct: 429 NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 488
Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336
+ +NS++ G CK G E A +L + L AD V Y L+ A K G++ K +
Sbjct: 489 PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 548
Query: 337 LLSMEENGCALDVDTFNTLMISF 359
L M G + TFN LM F
Sbjct: 549 LKEMLGKGLQPTIVTFNVLMNGF 571
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 54/258 (20%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N VT+ +LI G C EG++ A++L+ +M G +PN+ T ++++ GL ++GN+
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNI------- 507
Query: 83 QEMVNGMGDFGGI-YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL----- 136
+E V +G+F + Y +L+D CK +D+ +++ EM KG+ +
Sbjct: 508 EEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVL 567
Query: 137 ---LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
C L + +LL M+ +G+ P T+ L+ YC+ + A A++ M +G
Sbjct: 568 MNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGV 627
Query: 194 MPD-----------------------------------VFSYSVLINGYCKNFNVEEAMN 218
PD V +YSVLI G+ K EA
Sbjct: 628 GPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEARE 687
Query: 219 VSREMILNGF---KKIFN 233
V +M G K+IF+
Sbjct: 688 VFDQMRREGLAADKEIFD 705
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 17/222 (7%)
Query: 143 LVEANRLLELMMQRGLNPVIFT---YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
L EA R+ E M+ GL + + Y L+ C K AI +F G +V S
Sbjct: 191 LREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCY--KTATAIIVFREFPEVGVCWNVAS 248
Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
Y+++I+ C+ ++EA ++ M L G+ P+ + + ++G C+ G
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGY------------TPDVISYSTVVNGYCRFGE 296
Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
+ +V +L ++ + I+ S+I C+ A E F+++ + ++ D V Y
Sbjct: 297 LDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTT 356
Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
LI K G I+ + M DV T+ ++ F Q
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 398
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 144/323 (44%), Gaps = 36/323 (11%)
Query: 21 PLNDVTFNSLIKGFCMEGNIRDAS-QLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79
P + N LIK C DA ++ +M GC P+ T TLI+GL R G ++
Sbjct: 153 PPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAK 212
Query: 80 KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--- 136
KL EMV P V Y SLI+GLC + VD+ EMK KGI N
Sbjct: 213 KLFTEMVEK------DCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYS 266
Query: 137 -----LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
LCK + ++A L E+MM RG P + TYT L+ G C K+ A+ L D M +
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ 326
Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
G PD Y +I+G+C EA N EMIL G + P T NI +
Sbjct: 327 GLKPDAGLYGKVISGFCAISKFREAANFLDEMILGG------------ITPNRLTWNIHV 374
Query: 252 D-------GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304
GLC N + L+ ++ + VE SL++ CK G F+ A +L ++
Sbjct: 375 KTSNEVVRGLCAN-YPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDE 433
Query: 305 LSCKNLVADVVAYNILI-HALGK 326
+ + + +LI H L K
Sbjct: 434 IVTDGCIPSKGTWKLLIGHTLDK 456
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 153/343 (44%), Gaps = 33/343 (9%)
Query: 29 SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88
S+ +G+ D+ ++ KM F C P+ T++ L +NL K ++
Sbjct: 91 SICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYK----N 146
Query: 89 MGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL--------LCK 139
M + G P V LI LC+ D VD +F+EM +G + ++ LC+
Sbjct: 147 MREIG--LPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCR 204
Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
++ EA +L M+++ P + TYT L+NG C V+ A+ + M KG P+VF+
Sbjct: 205 FGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFT 264
Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
YS L++G CK+ +AM + M+ G + P T I GLCK
Sbjct: 265 YSSLMDGLCKDGRSLQAMELFEMMMARGCR------------PNMVTYTTLITGLCKEQK 312
Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
+ E +EL + + + ++ +I G C F A+ +++ + + + +NI
Sbjct: 313 IQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNI 372
Query: 320 LIHALGKEGQIKKENY------LLLSMEENGCALDVDTFNTLM 356
+ + + NY L LSM G +++V+T +L+
Sbjct: 373 HVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLV 415
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 25/270 (9%)
Query: 92 FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-INANTLLCKKTKLVEANRLL 150
+G +++P + SL R+ + KD + K + +L ++ +L A +
Sbjct: 96 YGRVHRP----FDSL-------RVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFY 144
Query: 151 ELMMQRGLNPVIFTYTPLLNGYCL-VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
+ M + GL P + + L+ C G V+ + +F M ++G PD ++Y LI+G C+
Sbjct: 145 KNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCR 204
Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
++EA KK+F EM + P T I+GLC + +V E M
Sbjct: 205 FGRIDEA------------KKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEE 252
Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
++ E V ++SL+ G CK G A ELF + + ++V Y LI L KE +
Sbjct: 253 MKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQK 312
Query: 330 IKKENYLLLSMEENGCALDVDTFNTLMISF 359
I++ LL M G D + ++ F
Sbjct: 313 IQEAVELLDRMNLQGLKPDAGLYGKVISGF 342
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 11/216 (5%)
Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
R+ M +P Y +L ++N+A + +M G P V S +VLI
Sbjct: 107 RVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKAL 166
Query: 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267
C+N +A G K IF EM P+++T I GLC+ G + E +LF
Sbjct: 167 CRNDGTVDA----------GLK-IFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLF 215
Query: 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327
+ +C V + SLI G C + A ++ K + +V Y+ L+ L K+
Sbjct: 216 TEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKD 275
Query: 328 GQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
G+ + L M GC ++ T+ TL+ +++
Sbjct: 276 GRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQ 311
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 141 bits (356), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 168/355 (47%), Gaps = 40/355 (11%)
Query: 6 GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
AL G ++ P + VT +SL+ GFC+ +I+DA + +M G + +V L
Sbjct: 141 SALSYLGKMMKLGIEP-DIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTIL 199
Query: 66 ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-RLVDQTKDLFM 124
I L + N + E++ M D G PNV Y SLI GLCK RL D + L
Sbjct: 200 IDTLCK----NRLVVPALEVLKRMKDRG--ISPNVVTYSSLITGLCKSGRLADAERRLH- 252
Query: 125 EMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176
EM K IN N + K+ KL + + + ++M+Q ++P +FTY+ L+ G C+
Sbjct: 253 EMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHN 312
Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK------ 230
+V+ AI + D M KG P+V +YS L NG+ K+ V++ + + +M G
Sbjct: 313 RVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCN 372
Query: 231 -----------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273
+F M ++P + NI + GL NG V + + F ++ +
Sbjct: 373 TLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKT 432
Query: 274 NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
+L + + +I G CK + + A +LF KL K + D AY I+I L + G
Sbjct: 433 RNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAG 487
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 138/331 (41%), Gaps = 45/331 (13%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
T N L+ FC A + KM G P++ T +L+ G + ++ + + +M
Sbjct: 125 TCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQM 184
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
MG K +V LID LCK+RLV V
Sbjct: 185 -EKMG-----IKRDVVVDTILIDTLCKNRLV---------------------------VP 211
Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN 205
A +L+ M RG++P + TY+ L+ G C G++ A M K P+V ++S LI+
Sbjct: 212 ALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALID 271
Query: 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265
Y K + + +V + MI ++ P FT + I GLC + V E ++
Sbjct: 272 AYAKRGKLSKVDSVYKMMIQ------------MSIDPNVFTYSSLIYGLCMHNRVDEAIK 319
Query: 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325
+ + C V +++L G K + +L + + + + A+ V+ N LI
Sbjct: 320 MLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYF 379
Query: 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
+ G+I + M NG ++ ++N ++
Sbjct: 380 QAGKIDLALGVFGYMTSNGLIPNIRSYNIVL 410
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 104/199 (52%), Gaps = 12/199 (6%)
Query: 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217
++P ++T L+N +C + + A++ M + G PD+ + S L+NG+C + ++++A+
Sbjct: 119 ISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAV 178
Query: 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277
V+ +M G K+ +VV +T I ID LCKN V+ +E+ ++
Sbjct: 179 YVAGQMEKMGIKR--------DVVVDT----ILIDTLCKNRLVVPALEVLKRMKDRGISP 226
Query: 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
V ++SLI G CK G A +++ K + +V+ ++ LI A K G++ K + +
Sbjct: 227 NVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVY 286
Query: 338 LSMEENGCALDVDTFNTLM 356
M + +V T+++L+
Sbjct: 287 KMMIQMSIDPNVFTYSSLI 305
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 23/277 (8%)
Query: 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-KGINANTLL----------CKKTKLVEA 146
P++ + ++ + K ++ D +L+ +++ +GI + L C+ + A
Sbjct: 83 PSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSA 142
Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
L MM+ G+ P I T + L+NG+CL + A+ + M + G DV ++LI+
Sbjct: 143 LSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDT 202
Query: 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266
CKN V A+ V + M G + P T + I GLCK+G + +
Sbjct: 203 LCKNRLVVPALEVLKRMKDRG------------ISPNVVTYSSLITGLCKSGRLADAERR 250
Query: 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326
++ V F++LI K G ++ + ++ +V Y+ LI+ L
Sbjct: 251 LHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCM 310
Query: 327 EGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
++ + +L M GC +V T++TL F +
Sbjct: 311 HNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSS 347
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 141 bits (355), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 169/347 (48%), Gaps = 28/347 (8%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
+T+N+LI+GFC G +++AS++ + M G RPNV T LI GL G L+L
Sbjct: 283 ITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNL 342
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
M+ + PN Y +I+ LCKD LV ++ MK + + +
Sbjct: 343 MIEKDEE------PNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGG 396
Query: 137 LCKKTKLVEANRLLELMMQRG--LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM 194
LC K L EA++LL LM++ +P + +Y L++G C +++ A+ ++D + K
Sbjct: 397 LCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGA 456
Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
D + ++L+N K +V +AM +++ ++ +V + T IDG
Sbjct: 457 GDRVTTNILLNSTLKAGDVNKAM------------ELWKQISDSKIVRNSDTYTAMIDGF 504
Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
CK G + L + +S + V +N L+ CK G + A LF ++ N DV
Sbjct: 505 CKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDV 564
Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
V++NI+I K G IK LL+ M G + D+ T++ L+ FL+
Sbjct: 565 VSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLK 611
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 171/344 (49%), Gaps = 28/344 (8%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
++N++I+GFC + A +L +M GC ++ T LI + G M+ + +EM
Sbjct: 179 SYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM 238
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL--- 137
F G+ + ++ Y SLI G C +D+ K LF E+ ++G I NTL+
Sbjct: 239 -----KFMGL-EADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGF 292
Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
CK +L EA+ + E M++RG+ P ++TYT L++G C VGK A+ L + M K P+
Sbjct: 293 CKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNA 352
Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257
+Y+++IN CK+ V +A+ +I MK P+ T NI + GLC
Sbjct: 353 VTYNIIINKLCKDGLVADAV------------EIVELMKKRRTRPDNITYNILLGGLCAK 400
Query: 258 GHVLEVMELFPTL--EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315
G + E +L + + S + V +N+LI G CK A ++++ L K D V
Sbjct: 401 GDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRV 460
Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
NIL+++ K G + K L + ++ + DT+ ++ F
Sbjct: 461 TTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 159/362 (43%), Gaps = 25/362 (6%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
K AL I + P N VT+N +I C +G + DA ++V+ M RP+ T
Sbjct: 332 KTKEALQLLNLMIEKDEEP-NAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITY 390
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
+ L+ GL G+++ KL M+ P+V Y +LI GLCK+ + Q D+
Sbjct: 391 NILLGGLCAKGDLDEASKLLYLMLKD----SSYTDPDVISYNALIHGLCKENRLHQALDI 446
Query: 123 FMEMKDK-----GINANTLLCKKTKLVEANRLLELMMQRGLNPVIF---TYTPLLNGYCL 174
+ + +K + N LL K + N+ +EL Q + ++ TYT +++G+C
Sbjct: 447 YDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCK 506
Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
G +NVA L M P VF Y+ L++ CK ++++A ++F E
Sbjct: 507 TGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAW------------RLFEE 554
Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
M+ N P+ + NI IDG K G + L + + + ++ LI K G
Sbjct: 555 MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGY 614
Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
+ A F+K+ D + ++ +G+ K L+ + + LD + T
Sbjct: 615 LDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCT 674
Query: 355 LM 356
+M
Sbjct: 675 VM 676
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 127/269 (47%), Gaps = 22/269 (8%)
Query: 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LCKKTKLVEANRL 149
P+VF Y ++I G C+ + +++ +L EMK G + + + CK K+ EA
Sbjct: 175 PDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGF 234
Query: 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209
L+ M GL + YT L+ G+C G+++ ALFD + +G P +Y+ LI G+CK
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294
Query: 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269
++EA + MI G V P +T IDGLC G E ++L
Sbjct: 295 LGQLKEASEIFEFMIERG------------VRPNVYTYTGLIDGLCGVGKTKEALQLLNL 342
Query: 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329
+ + E +N +I CK G+ A E+ + + D + YNIL+ L +G
Sbjct: 343 MIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGD 402
Query: 330 IKKENYLLLSMEENGCALDVD--TFNTLM 356
+ + + LL M ++ D D ++N L+
Sbjct: 403 LDEASKLLYLMLKDSSYTDPDVISYNALI 431
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 12/208 (5%)
Query: 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208
+L LM++RG ++ + LL G C + A++L M R MPDVFSY+ +I G+C
Sbjct: 129 VLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFC 188
Query: 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268
+ +E+A+ ++ NEMK T I ID CK G + E M
Sbjct: 189 EGKELEKALELA------------NEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLK 236
Query: 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328
++ E + ++ SLIRG C G + LF+++ + + YN LI K G
Sbjct: 237 EMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLG 296
Query: 329 QIKKENYLLLSMEENGCALDVDTFNTLM 356
Q+K+ + + M E G +V T+ L+
Sbjct: 297 QLKEASEIFEFMIERGVRPNVYTYTGLI 324
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 110/243 (45%), Gaps = 23/243 (9%)
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
LC+ + +A LL M + L P +F+Y ++ G+C ++ A+ L + M G
Sbjct: 152 LCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWS 211
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREM--------------ILNGF---------KKIFN 233
+ ++ +LI+ +CK ++EAM +EM ++ GF K +F+
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFD 271
Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
E+ P T N I G CK G + E E+F + V + LI G C G
Sbjct: 272 EVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVG 331
Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
+ A +L N + K+ + V YNI+I+ L K+G + ++ M++ D T+N
Sbjct: 332 KTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYN 391
Query: 354 TLM 356
L+
Sbjct: 392 ILL 394
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 12/196 (6%)
Query: 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223
+ + LL Y + K A + M ++GF +V+++++L+ G C+N +A+++ REM
Sbjct: 109 SLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREM 168
Query: 224 ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283
N +++P+ F+ N I G C+ + + +EL ++ S C + +
Sbjct: 169 RRN------------SLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWG 216
Query: 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343
LI CK G + A ++ L AD+V Y LI G++ + L + E
Sbjct: 217 ILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLER 276
Query: 344 GCALDVDTFNTLMISF 359
G + T+NTL+ F
Sbjct: 277 GDSPCAITYNTLIRGF 292
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 170/369 (46%), Gaps = 36/369 (9%)
Query: 22 LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
L+ ++ SLI F G R+A + KKM GC+P + T + ++ G M
Sbjct: 206 LDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVF---GKMGTPWNK 262
Query: 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
+V M G P+ + Y +LI + L + +F EMK G + N L
Sbjct: 263 ITSLVEKMKSDG--IAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNAL 320
Query: 137 L---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
L K + EA ++L M+ G +P I TY L++ Y G ++ A+ L + MA KG
Sbjct: 321 LDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGT 380
Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------K 230
PDVF+Y+ L++G+ + VE AM++ EM G K K
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK 440
Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
IF+E+ +C + P+ T N + +NG EV +F ++ + E FN+LI
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYS 500
Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
+ G FE A ++ ++ + D+ YN ++ AL + G ++ +L ME+ C +
Sbjct: 501 RCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNEL 560
Query: 351 TFNTLMISF 359
T+ +L+ ++
Sbjct: 561 TYCSLLHAY 569
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 124/298 (41%), Gaps = 37/298 (12%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
TFN+LI + G+ A + ++M G P+++T +T++ L R G + K+ EM
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV- 144
+G KPN Y SL+ + + L E+ I +L K LV
Sbjct: 551 EDGRC------KPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVC 604
Query: 145 -------EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197
EA R + +RG +P I T +++ Y V A + D M +GF P +
Sbjct: 605 SKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSM 664
Query: 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFK-----------------------KIFNE 234
+Y+ L+ + ++ + ++ + RE++ G K +IF+E
Sbjct: 665 ATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSE 724
Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292
M+ +VP+ T N FI + E + + + C +NS++ G CK
Sbjct: 725 MRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKL 782
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/395 (19%), Positives = 159/395 (40%), Gaps = 60/395 (15%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
VT+NSLI + +G + +A +L +MA G +P+V T TL++G R G + + + +E
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409
Query: 85 MVNG------------------MGDFGGIYK-----------PNVFCYGSLIDGLCKDRL 115
M N G F + K P++ + +L+ ++ +
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGM 469
Query: 116 VDQTKDLFMEMKDKGI-----NANTLLCKKTK---LVEANRLLELMMQRGLNPVIFTYTP 167
+ +F EMK G NTL+ ++ +A + M+ G+ P + TY
Sbjct: 470 DSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNT 529
Query: 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM---- 223
+L G + + M P+ +Y L++ Y + +++ E+
Sbjct: 530 VLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGV 589
Query: 224 -------------------ILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
+L ++ F+E+K P+ T N + + V +
Sbjct: 590 IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKAN 649
Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
+ ++ + +NSL+ + F + E+ ++ K + D+++YN +I+A
Sbjct: 650 GVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAY 709
Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359
+ +++ + + M +G DV T+NT + S+
Sbjct: 710 CRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSY 744
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 125/287 (43%), Gaps = 25/287 (8%)
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTLL-- 137
M NG+ + G + +V+ Y SLI + ++F +M++ G I N +L
Sbjct: 195 MFNGLQEDG--FSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNV 252
Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV-AIALFDSMARKGFM 194
T + L+E M G+ P +TY L+ C G ++ A +F+ M GF
Sbjct: 253 FGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITC-CKRGSLHQEAAQVFEEMKAAGFS 311
Query: 195 PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254
D +Y+ L++ Y K+ +EAM V EM+LNGF P T N I
Sbjct: 312 YDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFS------------PSIVTYNSLISAY 359
Query: 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314
++G + E MEL + + V + +L+ G + G E A +F ++ ++
Sbjct: 360 ARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNI 419
Query: 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
+N I G G+ + + + G + D+ T+NTL+ F Q
Sbjct: 420 CTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQ 466
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 26/209 (12%)
Query: 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM------------ 223
G+V+ A +F+ + GF DV+SY+ LI+ + + EA+NV ++M
Sbjct: 187 GRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITY 246
Query: 224 --ILNGFKK----------IFNEMKLCNVVPETFTCNIFIDGLCKNGHV-LEVMELFPTL 270
ILN F K + +MK + P+ +T N I CK G + E ++F +
Sbjct: 247 NVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLIT-CCKRGSLHQEAAQVFEEM 305
Query: 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330
+ + +N+L+ K + A ++ N++ +V YN LI A ++G +
Sbjct: 306 KAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGML 365
Query: 331 KKENYLLLSMEENGCALDVDTFNTLMISF 359
+ L M E G DV T+ TL+ F
Sbjct: 366 DEAMELKNQMAEKGTKPDVFTYTTLLSGF 394
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
Query: 42 DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDF--GGIYKPN 99
+A + ++ G P++TT +++++ G + K NG+ D+ + P+
Sbjct: 612 EAERAFSELKERGFSPDITTLNSMVSIY---GRRQMVAK-----ANGVLDYMKERGFTPS 663
Query: 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-----NTLL---CKKTKLVEANRLLE 151
+ Y SL+ + +++++ E+ KGI NT++ C+ T++ +A+R+
Sbjct: 664 MATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFS 723
Query: 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211
M G+ P + TY + Y AI + M + G P+ +Y+ +++GYCK
Sbjct: 724 EMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLN 783
Query: 212 NVEEA 216
+EA
Sbjct: 784 RKDEA 788
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308
I I L K G V +F L+ L V + SLI G + A +F K+
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237
Query: 309 NLVADVVAYNILIHALGKEG-QIKKENYLLLSMEENGCALDVDTFNTLM 356
++ YN++++ GK G K L+ M+ +G A D T+NTL+
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLI 286
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
+++N++I +C +RDAS++ +M G P+V T +T I + + +
Sbjct: 700 ISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRY 759
Query: 85 MV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
M+ +G +PN Y S++DG CK D+ K LF+E
Sbjct: 760 MIKHGC-------RPNQNTYNSIVDGYCKLNRKDEAK-LFVE 793
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350
KF + A + F K + D I+I LGKEG++ + ++E+G +LDV
Sbjct: 150 KFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVY 209
Query: 351 TFNTLMISF 359
++ +L+ +F
Sbjct: 210 SYTSLISAF 218
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 175/382 (45%), Gaps = 42/382 (10%)
Query: 10 AFGSFIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67
A G F +R L + VT+NS+I GF G + D ++M C P+V T + LI
Sbjct: 281 ARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 340
Query: 68 GLRRTGNMNLTLKLHQEMV-NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
+ G + + L+ ++EM NG+ KPNV Y +L+D CK+ ++ Q +++M
Sbjct: 341 CFCKFGKLPIGLEFYREMKGNGL-------KPNVVSYSTLVDAFCKEGMMQQAIKFYVDM 393
Query: 127 KDKGINANTLL--------CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
+ G+ N CK L +A RL M+Q G+ + TYT L++G C ++
Sbjct: 394 RRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERM 453
Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK-------- 230
A LF M G +P++ SY+ LI+G+ K N++ A+ + E+ G K
Sbjct: 454 KEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 513
Query: 231 ---------------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275
+ NEMK C + + +D K+G+ E + L ++ +
Sbjct: 514 IWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDI 573
Query: 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-NLVADVVAYNILIHALGKEGQIKKEN 334
E+ V F LI G CK + A + FN++S L A+ + +I L K+ Q++
Sbjct: 574 EVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAAT 633
Query: 335 YLLLSMEENGCALDVDTFNTLM 356
L M + G D + +LM
Sbjct: 634 TLFEQMVQKGLVPDRTAYTSLM 655
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 154/342 (45%), Gaps = 26/342 (7%)
Query: 28 NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87
N L+ F G D + K M G RP V T + +I + + G++ L +EM
Sbjct: 231 NGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEM-- 288
Query: 88 GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD-----KGINANTLL---CK 139
F G+ P+ Y S+IDG K +D T F EMKD I N L+ CK
Sbjct: 289 ---KFRGLV-PDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCK 344
Query: 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199
KL M GL P + +Y+ L++ +C G + AI + M R G +P+ ++
Sbjct: 345 FGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYT 404
Query: 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH 259
Y+ LI+ CK N+ +A + EM+ G + NVV T IDGLC
Sbjct: 405 YTSLIDANCKIGNLSDAFRLGNEMLQVGVE--------WNVV----TYTALIDGLCDAER 452
Query: 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319
+ E ELF ++ + + +N+LI G K + A EL N+L + + D++ Y
Sbjct: 453 MKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGT 512
Query: 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361
I L +I+ ++ M+E G + + TLM ++ +
Sbjct: 513 FIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFK 554
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 145/353 (41%), Gaps = 56/353 (15%)
Query: 27 FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
F++L G + +A Q KM F P +C+ L+ + G + + ++M+
Sbjct: 195 FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254
Query: 87 NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEA 146
G +P VF Y +ID +CK+ V+ + LF EMK
Sbjct: 255 ------GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMK------------------- 289
Query: 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206
RGL P TY +++G+ VG+++ + F+ M PDV +Y+ LIN
Sbjct: 290 --------FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINC 341
Query: 207 YCKNFNVEEAMNVSREMILNGFK-----------------------KIFNEMKLCNVVPE 243
+CK + + REM NG K K + +M+ +VP
Sbjct: 342 FCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPN 401
Query: 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303
+T ID CK G++ + L + E V + +LI G C + A ELF
Sbjct: 402 EYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFG 461
Query: 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
K+ ++ ++ +YN LIH K + + LL ++ G D+ + T +
Sbjct: 462 KMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 514
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 146/342 (42%), Gaps = 48/342 (14%)
Query: 22 LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
N VT+ +LI G C +++A +L KM T G PN+ + + LI G + NM+ L+L
Sbjct: 435 WNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL 494
Query: 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141
E+ G G KP++ YG+ I GLC ++ K + EMK+ GI AN+L+
Sbjct: 495 LNEL-KGRG-----IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI---- 544
Query: 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201
YT L++ Y G + L D M V ++
Sbjct: 545 -----------------------YTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFC 581
Query: 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261
VLI+G CKN V +A++ F +I N+ L FT IDGLCK+ V
Sbjct: 582 VLIDGLCKNKLVSKAVDY--------FNRISNDFGL-QANAAIFTA--MIDGLCKDNQVE 630
Query: 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321
LF + + SL+ G K G A L +K++ + D++AY L+
Sbjct: 631 AATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLV 690
Query: 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
L Q++K L M G D L IS L+K
Sbjct: 691 WGLSHCNQLQKARSFLEEMIGEGIHPD----EVLCISVLKKH 728
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%)
Query: 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291
F++MK V P+T +CN + K G +V F + + V +N +I CK
Sbjct: 215 FSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCK 274
Query: 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDT 351
G E A LF ++ + LV D V YN +I GK G++ M++ C DV T
Sbjct: 275 EGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVIT 334
Query: 352 FNTLMISF 359
+N L+ F
Sbjct: 335 YNALINCF 342
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 14/202 (6%)
Query: 15 IRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74
++ C N + + +L+ + GN + L+ +M V T LI GL +
Sbjct: 533 MKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKL 592
Query: 75 MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI--- 131
++ + + N DFG + N + ++IDGLCKD V+ LF +M KG+
Sbjct: 593 VSKAVDYFNRISN---DFG--LQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 647
Query: 132 -NANTLLC----KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
A T L K+ ++EA L + M + G+ + YT L+ G ++ A + +
Sbjct: 648 RTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLE 707
Query: 187 SMARKGFMPD-VFSYSVLINGY 207
M +G PD V SVL Y
Sbjct: 708 EMIGEGIHPDEVLCISVLKKHY 729
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 170/364 (46%), Gaps = 33/364 (9%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
AL +F S R P N VTF LI G+C G++ A L K+M NV T LI
Sbjct: 182 ALKSFHSMKRDALSP-NVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALI 240
Query: 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
G + G M +++ MV +PN Y ++IDG + D +M
Sbjct: 241 DGFCKKGEMQRAEEMYSRMVEDR------VEPNSLVYTTIIDGFFQRGDSDNAMKFLAKM 294
Query: 127 KDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178
++G+ + LC KL EA ++E M + L P + +T ++N Y G++
Sbjct: 295 LNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRM 354
Query: 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKN---------FNVEEAMNVSREMILNGF- 228
A+ ++ + +GF PDV + S +I+G KN F +E+A +V ++++
Sbjct: 355 KAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKANDVMYTVLIDALC 414
Query: 229 --------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280
+++F+++ +VP+ F +I GLCK G++++ +L + L +
Sbjct: 415 KEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLL 474
Query: 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340
+ +LI G G+ A ++F+++ + D +++LI A KEG + + LLL M
Sbjct: 475 AYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAASDLLLDM 534
Query: 341 EENG 344
+ G
Sbjct: 535 QRRG 538
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 166/351 (47%), Gaps = 25/351 (7%)
Query: 14 FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73
+ R Y P + +FNS++ C G ++ A +V M FGC P+V + ++LI G R G
Sbjct: 47 LVSRGYTP-HRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNG 105
Query: 74 NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA 133
++ + + + G I KP++ + SL +G K +++D+ ++M + K +
Sbjct: 106 DIRSASLVLESL---RASHGFICKPDIVSFNSLFNGFSKMKMLDEVF-VYMGVMLKCCSP 161
Query: 134 NTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185
N + CK +L A + M + L+P + T+T L++GYC G + VA++L+
Sbjct: 162 NVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLY 221
Query: 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
M R +V +Y+ LI+G+CK ++ A +++++ M V P +
Sbjct: 222 KEMRRVRMSLNVVTYTALIDGFCKKGEMQRA------------EEMYSRMVEDRVEPNSL 269
Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
IDG + G M+ + L + + +I G C G + A+E+ +
Sbjct: 270 VYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDM 329
Query: 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
+LV D+V + +++A K G++K + + E G DV +T++
Sbjct: 330 EKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMI 380
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 170/368 (46%), Gaps = 32/368 (8%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC 62
K+L + + + +C P N VT+++ I FC G ++ A + M PNV T
Sbjct: 143 KMLDEVFVYMGVMLKCCSP-NVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTF 201
Query: 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL 122
LI G + G++ + + L++EM NV Y +LIDG CK + + +++
Sbjct: 202 TCLIDGYCKAGDLEVAVSLYKEMRRVRMSL------NVVTYTALIDGFCKKGEMQRAEEM 255
Query: 123 FMEMKDKGINANTLLC--------KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
+ M + + N+L+ ++ A + L M+ +G+ I Y +++G C
Sbjct: 256 YSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCG 315
Query: 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234
GK+ A + + M + +PD+ ++ ++N Y K+ ++ A+N+ ++I GF+
Sbjct: 316 NGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFE----- 370
Query: 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
P+ + IDG+ KNG + E + F +E +N ++ + ++L CK G
Sbjct: 371 -------PDVVALSTMIDGIAKNGQLHEAIVYF-CIEKANDVMYTVLIDAL----CKEGD 418
Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
F LF+K+S LV D Y I L K+G + L M + G LD+ + T
Sbjct: 419 FIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTT 478
Query: 355 LMISFLQK 362
L+ K
Sbjct: 479 LIYGLASK 486
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 25/240 (10%)
Query: 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY 207
+ L ++ RG P ++ +++ C +G+V A + SM R G PDV SY+ LI+G+
Sbjct: 42 KFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGH 101
Query: 208 CKNFNVE------EAMNVSREMI----LNGFKKIFN---EMKLCNVV------------P 242
C+N ++ E++ S I + F +FN +MK+ + V P
Sbjct: 102 CRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSP 161
Query: 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302
T + +ID CK+G + ++ F +++ V F LI G CK G E+A L+
Sbjct: 162 NVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLY 221
Query: 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
++ + +VV Y LI K+G++++ + M E+ + + T++ F Q+
Sbjct: 222 KEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQR 281
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 158/324 (48%), Gaps = 28/324 (8%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLKL 81
N VT N +K C E ++ VK++ G P++ T TLI + G+++ L
Sbjct: 379 NQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGAL-- 436
Query: 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-----INANTL 136
EM+ MG G K N +++D LCK+R +D+ +L +G + TL
Sbjct: 437 --EMMREMGQKG--IKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTL 492
Query: 137 LC---KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
+ ++ K+ +A + + M + + P + T+ L+ G C GK +A+ FD +A G
Sbjct: 493 IMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGL 552
Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG 253
+PD +++ +I GYCK VE+A E I + FK P+ +TCNI ++G
Sbjct: 553 LPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFK------------PDNYTCNILLNG 600
Query: 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313
LCK G + + F TL I E+ +N++I CK + A +L +++ K L D
Sbjct: 601 LCKEGMTEKALNFFNTL-IEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPD 659
Query: 314 VVAYNILIHALGKEGQIKKENYLL 337
YN I L ++G++ + + LL
Sbjct: 660 RFTYNSFISLLMEDGKLSETDELL 683
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 113/407 (27%), Positives = 180/407 (44%), Gaps = 73/407 (17%)
Query: 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82
N VT+N+L+ G+C G++++A Q+V+ M P++ T + LI GL G+M L
Sbjct: 274 NRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGL--- 330
Query: 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL------ 136
E+++ M +P+V Y +LIDG + L + + L +M++ G+ AN +
Sbjct: 331 -ELMDAMKSLK--LQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISL 387
Query: 137 --LCKKTKLVEANRLL-ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193
LCK+ K R + EL+ G +P I TY L+ Y VG ++ A+ + M +KG
Sbjct: 388 KWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGI 447
Query: 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------KK 230
+ + + +++ CK ++EA N+ GF +
Sbjct: 448 KMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALE 507
Query: 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290
+++EMK + P T N I GLC +G ME F L S FNS+I G C
Sbjct: 508 MWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYC 567
Query: 291 KFGIFEIASELFNK----------LSCKNLV------------------------ADVVA 316
K G E A E +N+ +C L+ D V
Sbjct: 568 KEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVDTVT 627
Query: 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
YN +I A K+ ++K+ LL MEE G D T+N+ IS L ++
Sbjct: 628 YNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSF-ISLLMED 673
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 154/346 (44%), Gaps = 25/346 (7%)
Query: 21 PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80
P + F+ + + EG A Q+ +KM +PN+ TC+TL+ GL R + + ++
Sbjct: 128 PPSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPS-SFSIS 186
Query: 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK------GINAN 134
+E+ + M G NV + L++G C + ++ + M + + N
Sbjct: 187 SAREVFDDMVKIG--VSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYN 244
Query: 135 TLL---CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191
T+L KK +L + LL M + GL P TY L+ GYC +G + A + + M +
Sbjct: 245 TILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT 304
Query: 192 GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251
+PD+ +Y++LING C ++ E + ++ + MK + P+ T N I
Sbjct: 305 NVLPDLCTYNILINGLCNAGSMREGL------------ELMDAMKSLKLQPDVVTYNTLI 352
Query: 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL-SCKNL 310
DG + G LE +L +E + N ++ CK E + +L
Sbjct: 353 DGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGF 412
Query: 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
D+V Y+ LI A K G + ++ M + G ++ T NT++
Sbjct: 413 SPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTIL 458
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 14/219 (6%)
Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK-GFMPDVFSYSVLI 204
A + + M++ G++ + T+ L+NGYCL GK+ A+ + + M + PD +Y+ ++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247
Query: 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264
+S++ L+ K++ +MK +VP T N + G CK G + E
Sbjct: 248 KA------------MSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAF 295
Query: 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324
++ ++ +N + +N LI G C G EL + + L DVV YN LI
Sbjct: 296 QIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGC 355
Query: 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363
+ G + L+ ME +G + T N + + +L KE
Sbjct: 356 FELGLSLEARKLMEQMENDGVKANQVTHN-ISLKWLCKE 393
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 22/224 (9%)
Query: 22 LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81
+++VT+ +LI GF E + A ++ +M P V+T ++LI GL G L ++
Sbjct: 484 VDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEK 543
Query: 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME-----MKDKGINANTL 136
E+ G+ P+ + S+I G CK+ V++ + + E K N L
Sbjct: 544 FDELAE-----SGLL-PDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNIL 597
Query: 137 ---LCKKTKLVEA-NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192
LCK+ +A N L+ +R ++ V TY +++ +C K+ A L M KG
Sbjct: 598 LNGLCKEGMTEKALNFFNTLIEEREVDTV--TYNTMISAFCKDKKLKEAYDLLSEMEEKG 655
Query: 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
PD F+Y+ I+ ++ + E + +L F F MK
Sbjct: 656 LEPDRFTYNSFISLLMEDGKLSET-----DELLKKFSGKFGSMK 694
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 26/135 (19%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
AL F + I R ++ VT+N++I FC + +++A L+ +M G P+ T ++ I
Sbjct: 610 ALNFFNTLIEE--REVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFI 667
Query: 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK--------------------PNVFCYGSL 106
+ L G ++ T +L ++ G FG + + Y +
Sbjct: 668 SLLMEDGKLSETDELLKKFS---GKFGSMKRDLQVETEKNPATSESKEELNTEAIAYSDV 724
Query: 107 IDGLC-KDRLVDQTK 120
ID LC + RL + ++
Sbjct: 725 IDELCSRGRLKEHSR 739
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/361 (28%), Positives = 170/361 (47%), Gaps = 29/361 (8%)
Query: 3 KVLGALMAFGSFIRRCYRPLNDV-TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT 61
+V A+ F +R ++ ND TFN LI+G C G A +L+ M+ FGC P++ T
Sbjct: 186 RVEDAMKLFDEHLR--FQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVT 243
Query: 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121
+TLI G ++ +N ++ +++ +G + P+V Y S+I G CK + +
Sbjct: 244 YNTLIQGFCKSNELNKASEMFKDVKSG-----SVCSPDVVTYTSMISGYCKAGKMREASS 298
Query: 122 LFMEMKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173
L +M GI + K +++ A + M+ G P + T+T L++GYC
Sbjct: 299 LLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYC 358
Query: 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233
VG+V+ L++ M +G P+ F+YS+LIN C E + +RE++
Sbjct: 359 RVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCN----ENRLLKARELL--------G 406
Query: 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293
++ +++P+ F N IDG CK G V E + +E C+ F LI G C G
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKG 466
Query: 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353
A +F+K+ D + + L+ L K G + KE Y L + G + +V
Sbjct: 467 RMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAG-MAKEAYHLNQIARKGQSNNVVPLE 525
Query: 354 T 354
T
Sbjct: 526 T 526
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 24/234 (10%)
Query: 24 DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83
+VTFN L+ G+ G + A ++ KM +FGC P+V T +LI G R G ++ +L +
Sbjct: 312 NVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWE 371
Query: 84 EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL------ 137
EM N G F PN F Y LI+ LC + + + ++L ++ K I +
Sbjct: 372 EM-NARGMF-----PNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVID 425
Query: 138 --CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195
CK K+ EAN ++E M ++ P T+T L+ G+C+ G++ A+++F M G P
Sbjct: 426 GFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSP 485
Query: 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ETFTCN 248
D + S L++ K +EA +++ +I + + NVVP ET T N
Sbjct: 486 DKITVSSLLSCLLKAGMAKEAYHLN---------QIARKGQSNNVVPLETKTAN 530
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 135/321 (42%), Gaps = 29/321 (9%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
T+N L + C G A Q+ + M + G PN L++ G ++ L +
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKGINANTL-------L 137
G SL++ L K DR+ D K ++ + N L
Sbjct: 165 FEVEG--------CCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGL 216
Query: 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF-MPD 196
C K +A LL +M G P I TY L+ G+C ++N A +F + PD
Sbjct: 217 CGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPD 276
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
V +Y+ +I+GYCK + EA ++ +M+ G + P T N+ +DG K
Sbjct: 277 VVTYTSMISGYCKAGKMREASSLLDDMLRLG------------IYPTNVTFNVLVDGYAK 324
Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316
G +L E+ + C V F SLI G C+ G L+ +++ + + +
Sbjct: 325 AGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFT 384
Query: 317 YNILIHALGKEGQIKKENYLL 337
Y+ILI+AL E ++ K LL
Sbjct: 385 YSILINALCNENRLLKARELL 405
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 173/381 (45%), Gaps = 45/381 (11%)
Query: 9 MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG 68
M + R + P N T+N L+K C + A +L+ +M+ GC P+ + T+I+
Sbjct: 167 MVYRDMKRDGFEP-NVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISS 225
Query: 69 LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128
+ G +V + ++P V Y +LI+GLCK+ +L EM +
Sbjct: 226 MCEVG-----------LVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVE 274
Query: 129 KGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180
KGI+ N + LC ++ A L M++RG +P I+T + L+ G L G
Sbjct: 275 KGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFD 334
Query: 181 AIALFDSMARK-GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM--------------IL 225
A+ L++ M R G P+V +Y+ L+ G+C + N+ +A++V M ++
Sbjct: 335 ALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLI 394
Query: 226 NGFKK---------IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276
NGF K I+N+M P ++ LC++ E L + NC
Sbjct: 395 NGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCA 454
Query: 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV-ADVVAYNILIHALGKEGQIKKENY 335
V FN+ I+G C G + A ++F ++ ++ ++V YN L+ L K +I++
Sbjct: 455 PSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYG 514
Query: 336 LLLSMEENGCALDVDTFNTLM 356
L + G T+NTL+
Sbjct: 515 LTREIFMRGVEWSSSTYNTLL 535
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 154/362 (42%), Gaps = 43/362 (11%)
Query: 27 FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86
F S+I + G A ++ ++ FGC P+V + ++ L + + ++++M
Sbjct: 114 FISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMK 173
Query: 87 NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL--------LC 138
++PNVF Y L+ LCK+ VD K L +EM +KG + + +C
Sbjct: 174 RDG------FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMC 227
Query: 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF 198
+ + E L E PV+ Y L+NG C A L M KG P+V
Sbjct: 228 EVGLVKEGRELAE-----RFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVI 282
Query: 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKK-----------------IFNEMKLCN-- 239
SYS LIN C + +E A + +M+ G F+ + L N
Sbjct: 283 SYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQM 342
Query: 240 -----VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294
+ P N + G C +G++++ + +F +E C + + SLI G K G
Sbjct: 343 IRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGS 402
Query: 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354
+ A ++NK+ +VV Y ++ AL + + K+ L+ M + CA V TFN
Sbjct: 403 LDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNA 462
Query: 355 LM 356
+
Sbjct: 463 FI 464
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 143/340 (42%), Gaps = 25/340 (7%)
Query: 6 GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65
GA + + P N +++++LI C G I A + +M GC PN+ T +L
Sbjct: 264 GAFELMREMVEKGISP-NVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSL 322
Query: 66 ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125
+ G G L L +M+ G G +PNV Y +L+ G C + + +F
Sbjct: 323 VKGCFLRGTTFDALDLWNQMIRGFG-----LQPNVVAYNTLVQGFCSHGNIVKAVSVFSH 377
Query: 126 MKDKGINANTL--------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177
M++ G + N K+ L A + M+ G P + YT ++ C K
Sbjct: 378 MEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSK 437
Query: 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237
A +L + M+++ P V +++ I G C ++ A V R+M +
Sbjct: 438 FKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQM---------EQQHR 488
Query: 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297
C P T N +DGL K + E L + + E +N+L+ G C G+ I
Sbjct: 489 CP--PNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGI 546
Query: 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337
A +L K+ D + N++I A K+G+ ++ +L
Sbjct: 547 ALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQML 586
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 154/357 (43%), Gaps = 48/357 (13%)
Query: 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLI 66
AL + IR N V +N+L++GFC GNI A + M GC PN+ T +LI
Sbjct: 335 ALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLI 394
Query: 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126
G + G+++ + + +M+ G PNV Y ++++
Sbjct: 395 NGFAKRGSLDGAVYIWNKMLTS----GCC--PNVVVYTNMVEA----------------- 431
Query: 127 KDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186
LC+ +K EA L+E+M + P + T+ + G C G+++ A +F
Sbjct: 432 ----------LCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFR 481
Query: 187 SMARKGF-MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245
M ++ P++ +Y+ L++G K +EEA ++RE+ + G V +
Sbjct: 482 QMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRG------------VEWSSS 529
Query: 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305
T N + G C G ++L + + N +I CK G E A+++ + +
Sbjct: 530 TYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLV 589
Query: 306 SC--KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFL 360
SC + DV++Y +I L + + LL M G + T++ L+ F+
Sbjct: 590 SCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCFI 646
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 151/347 (43%), Gaps = 32/347 (9%)
Query: 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84
+TF +I+ M+G + L+++M G + ++I+ R+ G + E
Sbjct: 77 LTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAV----E 132
Query: 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTL-------- 136
M + +FG P+V Y ++D L + + ++ +MK G N
Sbjct: 133 MFYRIKEFGC--DPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKA 190
Query: 137 LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196
LCK K+ A +LL M +G P +YT +++ C VG V L + F P
Sbjct: 191 LCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAER-----FEPV 245
Query: 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK 256
V Y+ LING CK + + A + REM+ G + P + + I+ LC
Sbjct: 246 VSVYNALINGLCKEHDYKGAFELMREMVEKG------------ISPNVISYSTLINVLCN 293
Query: 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL-SCKNLVADVV 315
+G + + C + +SL++GC G A +L+N++ L +VV
Sbjct: 294 SGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVV 353
Query: 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362
AYN L+ G I K + MEE GC+ ++ T+ +L+ F ++
Sbjct: 354 AYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKR 400
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 138/300 (46%), Gaps = 30/300 (10%)
Query: 65 LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM 124
++ LR+ + L L + + N ++K + +I L D VD + L
Sbjct: 46 VVKRLRQESCVPLALHFFKSIANS-----NLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQ 100
Query: 125 EMKDKGINAN-----TLLCKKTKLVEANRLLEL---MMQRGLNPVIFTYTPLLNGYCLVG 176
+MK +G + + +++ ++ A R +E+ + + G +P + Y +L+
Sbjct: 101 QMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGEN 160
Query: 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236
++ + ++ M R GF P+VF+Y+VL+ CKN V+ G KK+ EM
Sbjct: 161 RIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVD------------GAKKLLVEMS 208
Query: 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296
P+ + I +C+ G V E EL E V ++N+LI G CK ++
Sbjct: 209 NKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEP-----VVSVYNALINGLCKEHDYK 263
Query: 297 IASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356
A EL ++ K + +V++Y+ LI+ L GQI+ L M + GC ++ T ++L+
Sbjct: 264 GAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLV 323
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 31/149 (20%)
Query: 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEM 85
T+N+L+ G C G A QLV KM G P+ T + +I + G ++ +
Sbjct: 530 TYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLV 589
Query: 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145
G ++P+V Y ++I GLC+ C++ ++
Sbjct: 590 SCGRRK----WRPDVISYTNVIWGLCRSN-----------------------CREDGVI- 621
Query: 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCL 174
LLE M+ G+ P I T++ L+N + L
Sbjct: 622 ---LLERMISAGIVPSIATWSVLINCFIL 647
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,010,628
Number of Sequences: 539616
Number of extensions: 5261202
Number of successful extensions: 25282
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 15660
Number of HSP's gapped (non-prelim): 2736
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)