Query 044256
Match_columns 363
No_of_seqs 590 out of 1296
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 12:56:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.5E-59 7.6E-64 424.9 44.1 331 23-359 436-799 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.6E-59 1.4E-63 423.1 44.1 345 1-354 450-829 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.3E-53 7.1E-58 382.7 36.6 343 1-362 100-475 (697)
4 PLN03081 pentatricopeptide (PP 100.0 3.6E-53 7.8E-58 382.5 32.3 338 2-363 137-508 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 6.5E-53 1.4E-57 389.4 34.3 350 2-363 236-639 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.1E-52 4.6E-57 386.0 36.8 345 1-363 266-671 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-24 6.4E-29 202.8 41.1 345 2-363 513-885 (899)
8 PRK11788 tetratricopeptide rep 100.0 3.3E-25 7.2E-30 188.8 31.2 300 2-350 49-354 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.2E-23 4.7E-28 196.9 41.5 330 1-359 478-814 (899)
10 PRK15174 Vi polysaccharide exp 99.9 9.3E-22 2E-26 175.7 40.0 316 1-343 55-381 (656)
11 PRK11788 tetratricopeptide rep 99.9 2.1E-21 4.5E-26 165.5 33.7 280 29-360 40-326 (389)
12 PRK15174 Vi polysaccharide exp 99.9 8.6E-19 1.9E-23 156.9 38.6 281 1-308 89-381 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 3.4E-18 7.3E-23 153.4 40.8 287 1-307 140-495 (615)
14 PRK11447 cellulose synthase su 99.9 2.3E-18 5E-23 164.2 41.8 326 1-343 282-700 (1157)
15 KOG4626 O-linked N-acetylgluco 99.9 4.2E-19 9.2E-24 147.2 29.6 318 1-350 129-490 (966)
16 PRK11447 cellulose synthase su 99.9 2.5E-18 5.5E-23 164.0 37.6 317 1-346 364-744 (1157)
17 PRK10049 pgaA outer membrane p 99.9 1.3E-17 2.7E-22 152.5 39.9 340 1-357 62-468 (765)
18 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-17 4.6E-22 148.3 36.7 294 25-343 128-496 (615)
19 PRK10049 pgaA outer membrane p 99.8 8.7E-17 1.9E-21 147.0 39.2 326 1-350 28-427 (765)
20 KOG4626 O-linked N-acetylgluco 99.8 1.7E-17 3.7E-22 137.8 26.1 295 20-342 112-450 (966)
21 PRK14574 hmsH outer membrane p 99.8 2.9E-16 6.2E-21 141.5 34.1 337 2-354 116-522 (822)
22 PRK10747 putative protoheme IX 99.8 3.6E-15 7.8E-20 126.2 32.7 289 2-342 98-389 (398)
23 PF13429 TPR_15: Tetratricopep 99.8 3.1E-18 6.8E-23 138.6 13.6 261 29-342 13-276 (280)
24 PRK09782 bacteriophage N4 rece 99.8 1.4E-14 3E-19 133.4 37.8 320 2-349 356-710 (987)
25 TIGR00540 hemY_coli hemY prote 99.8 6.9E-15 1.5E-19 125.2 32.4 287 2-342 98-398 (409)
26 PF13429 TPR_15: Tetratricopep 99.8 1.2E-17 2.6E-22 135.3 13.9 256 1-307 21-276 (280)
27 KOG2076 RNA polymerase III tra 99.8 3.4E-14 7.5E-19 123.2 34.1 318 1-341 152-510 (895)
28 KOG4422 Uncharacterized conser 99.7 2.9E-14 6.4E-19 113.8 29.7 331 20-359 112-478 (625)
29 KOG4422 Uncharacterized conser 99.7 9.4E-14 2E-18 111.0 32.5 329 5-346 224-593 (625)
30 COG2956 Predicted N-acetylgluc 99.7 3.9E-14 8.5E-19 109.0 27.7 290 2-343 49-347 (389)
31 PRK09782 bacteriophage N4 rece 99.7 5E-14 1.1E-18 129.9 33.7 266 20-342 471-739 (987)
32 PRK14574 hmsH outer membrane p 99.7 2.5E-13 5.5E-18 122.8 36.5 175 1-189 47-230 (822)
33 COG3071 HemY Uncharacterized e 99.7 5.2E-13 1.1E-17 105.9 32.1 299 1-348 97-395 (400)
34 KOG2002 TPR-containing nuclear 99.7 1.2E-13 2.7E-18 120.7 30.5 351 2-363 284-730 (1018)
35 KOG2003 TPR repeat-containing 99.7 1.4E-14 3.1E-19 116.6 22.7 341 5-361 218-706 (840)
36 KOG1126 DNA-binding cell divis 99.7 3.1E-14 6.8E-19 119.6 25.2 280 4-344 335-621 (638)
37 PRK10747 putative protoheme IX 99.7 9.3E-13 2E-17 111.7 31.6 269 37-363 97-375 (398)
38 KOG1915 Cell cycle control pro 99.7 4.7E-12 1E-16 102.7 31.4 317 2-343 155-536 (677)
39 TIGR00540 hemY_coli hemY prote 99.6 5.7E-12 1.2E-16 107.5 31.1 279 36-363 96-384 (409)
40 KOG1155 Anaphase-promoting com 99.6 1.4E-11 3E-16 99.7 30.9 301 36-361 239-552 (559)
41 COG2956 Predicted N-acetylgluc 99.6 5.6E-12 1.2E-16 97.4 27.3 261 72-358 48-324 (389)
42 KOG0547 Translocase of outer m 99.6 1E-11 2.3E-16 101.1 29.6 341 1-359 128-577 (606)
43 PRK12370 invasion protein regu 99.6 2E-12 4.4E-17 114.3 27.8 267 21-344 253-536 (553)
44 KOG1126 DNA-binding cell divis 99.6 4.5E-13 9.8E-18 112.8 20.4 256 74-359 334-601 (638)
45 KOG1155 Anaphase-promoting com 99.6 4.8E-11 1E-15 96.7 28.7 252 67-342 235-494 (559)
46 KOG2002 TPR-containing nuclear 99.6 1.3E-10 2.9E-15 102.3 33.2 254 97-352 267-569 (1018)
47 PF13041 PPR_2: PPR repeat fam 99.5 2.3E-14 5.1E-19 82.2 6.4 50 312-361 1-50 (50)
48 PRK12370 invasion protein regu 99.5 3.7E-11 8.1E-16 106.4 29.1 236 57-343 254-502 (553)
49 KOG0495 HAT repeat protein [RN 99.5 4.1E-10 9E-15 95.3 33.2 313 3-342 531-879 (913)
50 KOG1915 Cell cycle control pro 99.5 5.9E-10 1.3E-14 90.9 32.7 325 2-343 87-500 (677)
51 PF12569 NARP1: NMDA receptor- 99.5 2.2E-10 4.7E-15 98.5 31.9 287 30-342 10-333 (517)
52 KOG2076 RNA polymerase III tra 99.5 2.3E-10 5.1E-15 100.0 32.1 318 2-342 187-554 (895)
53 TIGR02521 type_IV_pilW type IV 99.5 3.8E-11 8.3E-16 94.9 25.2 203 98-342 29-231 (234)
54 KOG1840 Kinesin light chain [C 99.5 1.9E-11 4.2E-16 103.7 23.8 261 20-306 195-477 (508)
55 KOG0495 HAT repeat protein [RN 99.5 7.1E-10 1.5E-14 93.9 32.4 292 2-308 564-880 (913)
56 TIGR02521 type_IV_pilW type IV 99.5 2.6E-11 5.6E-16 95.8 23.5 192 23-224 30-230 (234)
57 KOG4318 Bicoid mRNA stability 99.5 8.2E-12 1.8E-16 108.6 21.0 83 276-361 201-283 (1088)
58 COG3071 HemY Uncharacterized e 99.5 7.2E-10 1.6E-14 88.4 29.9 272 37-363 97-375 (400)
59 KOG1840 Kinesin light chain [C 99.5 2E-10 4.4E-15 97.6 27.7 275 60-359 200-501 (508)
60 KOG1173 Anaphase-promoting com 99.5 6.2E-10 1.3E-14 92.6 29.0 283 23-358 243-531 (611)
61 KOG1129 TPR repeat-containing 99.5 9.7E-12 2.1E-16 96.3 17.3 229 63-342 227-457 (478)
62 KOG4318 Bicoid mRNA stability 99.5 4.2E-12 9.1E-17 110.3 16.9 270 9-327 11-284 (1088)
63 PF13041 PPR_2: PPR repeat fam 99.5 2.2E-13 4.7E-18 78.2 6.3 50 160-209 1-50 (50)
64 KOG2003 TPR repeat-containing 99.5 3.9E-10 8.4E-15 91.5 26.0 272 33-329 428-709 (840)
65 KOG1129 TPR repeat-containing 99.4 4.4E-11 9.4E-16 92.8 18.8 213 99-356 222-436 (478)
66 KOG1156 N-terminal acetyltrans 99.4 3.6E-09 7.8E-14 89.5 31.4 329 2-345 55-470 (700)
67 KOG1173 Anaphase-promoting com 99.4 1.1E-09 2.4E-14 91.1 27.8 276 2-325 258-533 (611)
68 KOG2376 Signal recognition par 99.4 8.2E-09 1.8E-13 86.5 32.4 343 1-361 25-504 (652)
69 KOG0547 Translocase of outer m 99.4 1.5E-09 3.2E-14 88.8 27.1 291 26-342 117-490 (606)
70 PRK11189 lipoprotein NlpI; Pro 99.4 1.2E-09 2.6E-14 88.9 26.5 84 38-128 40-126 (296)
71 PF12569 NARP1: NMDA receptor- 99.4 4.2E-09 9.2E-14 90.7 28.2 280 1-307 17-333 (517)
72 PRK11189 lipoprotein NlpI; Pro 99.3 5.1E-09 1.1E-13 85.2 26.5 228 73-354 40-275 (296)
73 KOG1174 Anaphase-promoting com 99.3 1.5E-08 3.3E-13 81.4 26.1 303 19-349 190-504 (564)
74 KOG0548 Molecular co-chaperone 99.3 4.1E-08 8.8E-13 81.6 29.2 343 1-361 15-471 (539)
75 COG3063 PilF Tfp pilus assembl 99.3 4.4E-09 9.6E-14 77.9 20.9 184 28-221 39-231 (250)
76 KOG2047 mRNA splicing factor [ 99.3 1.3E-07 2.8E-12 80.5 30.7 340 2-350 116-585 (835)
77 KOG1174 Anaphase-promoting com 99.3 1.6E-07 3.5E-12 75.7 29.8 278 5-309 213-501 (564)
78 COG3063 PilF Tfp pilus assembl 99.2 3.4E-08 7.4E-13 73.3 23.0 182 1-191 48-236 (250)
79 cd05804 StaR_like StaR_like; a 99.2 2.6E-07 5.7E-12 78.0 30.7 300 20-343 2-336 (355)
80 KOG0624 dsRNA-activated protei 99.2 2.7E-07 5.9E-12 72.7 27.1 297 17-342 31-369 (504)
81 KOG3785 Uncharacterized conser 99.2 9.8E-08 2.1E-12 75.5 24.7 142 2-156 36-180 (557)
82 cd05804 StaR_like StaR_like; a 99.2 1.8E-07 3.9E-12 79.0 28.7 289 2-308 20-336 (355)
83 KOG4162 Predicted calmodulin-b 99.2 1E-06 2.2E-11 76.6 31.9 194 23-224 322-540 (799)
84 KOG1156 N-terminal acetyltrans 99.1 2.7E-06 5.9E-11 72.7 30.3 214 2-227 21-249 (700)
85 PF04733 Coatomer_E: Coatomer 99.1 1.3E-08 2.8E-13 81.7 16.2 150 170-342 110-264 (290)
86 KOG4340 Uncharacterized conser 99.1 7E-08 1.5E-12 74.5 18.7 188 27-228 13-209 (459)
87 PF04733 Coatomer_E: Coatomer 99.1 1.6E-08 3.6E-13 81.2 16.2 244 2-308 15-265 (290)
88 KOG1070 rRNA processing protei 99.1 4.5E-07 9.8E-12 83.7 26.5 227 61-331 1460-1688(1710)
89 KOG1125 TPR repeat-containing 99.1 6.7E-08 1.5E-12 81.1 19.6 260 34-336 295-564 (579)
90 KOG4340 Uncharacterized conser 99.0 1.3E-06 2.8E-11 67.7 23.4 278 2-306 24-337 (459)
91 KOG4162 Predicted calmodulin-b 99.0 1.1E-06 2.5E-11 76.4 25.4 312 4-343 460-783 (799)
92 KOG1128 Uncharacterized conser 99.0 5.7E-07 1.2E-11 77.8 23.0 214 105-343 403-616 (777)
93 KOG2047 mRNA splicing factor [ 99.0 5.2E-06 1.1E-10 71.1 28.2 309 23-346 101-509 (835)
94 PLN02789 farnesyltranstransfer 99.0 4.5E-06 9.8E-11 68.2 27.0 216 25-291 38-267 (320)
95 KOG2376 Signal recognition par 99.0 7.9E-06 1.7E-10 69.2 28.5 326 2-340 93-517 (652)
96 KOG1070 rRNA processing protei 98.9 1.9E-06 4.2E-11 79.7 26.0 211 97-348 1455-1668(1710)
97 PRK10370 formate-dependent nit 98.9 4.9E-07 1.1E-11 68.7 19.0 161 169-358 23-186 (198)
98 KOG1125 TPR repeat-containing 98.9 3E-07 6.4E-12 77.3 18.9 202 136-342 294-526 (579)
99 PF12854 PPR_1: PPR repeat 98.9 1.6E-09 3.4E-14 55.8 3.5 32 309-340 2-33 (34)
100 PRK04841 transcriptional regul 98.9 1.3E-05 2.7E-10 76.7 32.3 305 25-343 410-760 (903)
101 KOG0624 dsRNA-activated protei 98.9 1.4E-05 3.1E-10 63.4 28.4 287 1-309 51-371 (504)
102 PRK10370 formate-dependent nit 98.9 1.5E-07 3.2E-12 71.5 15.3 119 2-130 53-174 (198)
103 PLN02789 farnesyltranstransfer 98.9 6.3E-06 1.4E-10 67.4 25.5 203 2-256 51-267 (320)
104 TIGR03302 OM_YfiO outer membra 98.9 6.6E-07 1.4E-11 70.7 19.4 166 161-343 32-232 (235)
105 PF12854 PPR_1: PPR repeat 98.9 3E-09 6.5E-14 54.7 3.7 32 157-188 2-33 (34)
106 TIGR03302 OM_YfiO outer membra 98.9 1.1E-06 2.3E-11 69.6 19.7 184 22-225 31-231 (235)
107 PRK15359 type III secretion sy 98.8 1.8E-07 3.9E-12 67.2 13.3 105 246-354 26-130 (144)
108 PRK14720 transcript cleavage f 98.8 6.4E-06 1.4E-10 75.2 25.3 67 13-81 20-87 (906)
109 PRK15359 type III secretion sy 98.8 4.1E-07 9E-12 65.3 14.2 109 8-129 13-121 (144)
110 KOG2053 Mitochondrial inherita 98.8 8.6E-05 1.9E-09 66.3 33.5 178 2-192 23-256 (932)
111 PRK04841 transcriptional regul 98.8 4E-05 8.7E-10 73.3 31.2 302 34-343 384-720 (903)
112 COG5010 TadD Flp pilus assembl 98.8 2.4E-06 5.2E-11 65.1 18.1 161 166-342 70-230 (257)
113 COG4783 Putative Zn-dependent 98.8 9.6E-07 2.1E-11 73.0 16.6 134 2-156 320-454 (484)
114 KOG1128 Uncharacterized conser 98.8 1.5E-06 3.3E-11 75.2 18.3 236 23-291 397-635 (777)
115 PRK15179 Vi polysaccharide bio 98.8 1.4E-05 3.1E-10 72.1 25.3 231 99-360 27-266 (694)
116 TIGR02552 LcrH_SycD type III s 98.8 5.4E-07 1.2E-11 64.4 13.6 112 244-359 17-128 (135)
117 COG5010 TadD Flp pilus assembl 98.8 9.6E-07 2.1E-11 67.1 14.9 165 20-222 63-227 (257)
118 KOG0548 Molecular co-chaperone 98.7 0.00011 2.3E-09 62.0 28.0 299 31-349 9-425 (539)
119 KOG3617 WD40 and TPR repeat-co 98.7 2.7E-05 5.8E-10 68.9 23.6 54 286-339 1042-1105(1416)
120 PRK14720 transcript cleavage f 98.7 3.5E-05 7.7E-10 70.6 25.3 242 54-325 25-268 (906)
121 KOG3785 Uncharacterized conser 98.7 6E-05 1.3E-09 60.2 23.2 320 2-352 71-497 (557)
122 TIGR02552 LcrH_SycD type III s 98.7 9.5E-07 2.1E-11 63.1 12.4 111 10-130 5-115 (135)
123 KOG1914 mRNA cleavage and poly 98.6 0.00023 4.9E-09 60.2 33.7 111 245-357 367-480 (656)
124 KOG0985 Vesicle coat protein c 98.6 0.00015 3.2E-09 65.9 25.7 157 163-361 1105-1261(1666)
125 KOG0985 Vesicle coat protein c 98.6 0.00025 5.4E-09 64.5 27.1 245 60-334 1105-1374(1666)
126 KOG3081 Vesicle coat complex C 98.6 7E-05 1.5E-09 57.4 20.4 170 150-342 96-270 (299)
127 COG4783 Putative Zn-dependent 98.6 1.5E-05 3.2E-10 66.2 18.0 136 174-343 318-454 (484)
128 KOG3081 Vesicle coat complex C 98.6 0.00011 2.4E-09 56.4 20.8 240 34-308 18-271 (299)
129 PRK15179 Vi polysaccharide bio 98.5 2E-05 4.4E-10 71.1 19.9 128 20-156 82-217 (694)
130 KOG1127 TPR repeat-containing 98.5 0.00011 2.5E-09 66.4 23.9 139 6-155 510-658 (1238)
131 KOG3060 Uncharacterized conser 98.5 0.00018 3.9E-09 54.8 22.6 162 165-342 55-219 (289)
132 KOG1127 TPR repeat-containing 98.5 2.5E-05 5.3E-10 70.4 19.3 83 255-339 827-909 (1238)
133 TIGR00756 PPR pentatricopeptid 98.5 1.9E-07 4.2E-12 48.8 4.1 33 316-348 2-34 (35)
134 KOG3060 Uncharacterized conser 98.5 0.00016 3.4E-09 55.1 20.1 150 72-225 25-182 (289)
135 KOG1914 mRNA cleavage and poly 98.5 0.00053 1.2E-08 58.1 29.5 131 199-343 368-501 (656)
136 TIGR00756 PPR pentatricopeptid 98.5 3.3E-07 7.1E-12 47.9 4.5 34 26-59 2-35 (35)
137 PF09976 TPR_21: Tetratricopep 98.5 2.5E-05 5.4E-10 56.4 15.4 126 198-340 13-144 (145)
138 PF13812 PPR_3: Pentatricopept 98.5 3.3E-07 7.2E-12 47.5 4.2 33 315-347 2-34 (34)
139 KOG3616 Selective LIM binding 98.5 8.1E-05 1.8E-09 65.3 20.2 251 29-308 737-1024(1636)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.5E-05 5.4E-10 65.3 16.7 125 200-342 172-296 (395)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.5E-05 3.1E-10 66.7 15.3 123 166-306 173-295 (395)
142 PF13812 PPR_3: Pentatricopept 98.4 4.3E-07 9.3E-12 47.1 4.2 33 25-57 2-34 (34)
143 KOG3616 Selective LIM binding 98.4 4.5E-05 9.7E-10 66.8 18.0 54 286-342 857-910 (1636)
144 KOG3617 WD40 and TPR repeat-co 98.4 0.00021 4.6E-09 63.5 21.2 244 58-341 725-994 (1416)
145 PF08579 RPM2: Mitochondrial r 98.3 1.1E-05 2.4E-10 53.1 9.7 78 284-361 30-116 (120)
146 PLN03088 SGT1, suppressor of 98.3 2.1E-05 4.6E-10 65.8 13.9 105 251-359 9-113 (356)
147 PF10037 MRP-S27: Mitochondria 98.3 1.2E-05 2.6E-10 67.5 12.2 122 240-361 62-185 (429)
148 cd00189 TPR Tetratricopeptide 98.3 1.8E-05 4E-10 52.3 10.8 94 247-342 3-96 (100)
149 PF09976 TPR_21: Tetratricopep 98.3 3.4E-05 7.5E-10 55.7 12.3 115 2-126 25-144 (145)
150 cd00189 TPR Tetratricopeptide 98.3 2E-05 4.4E-10 52.1 10.1 96 26-129 2-97 (100)
151 PF14938 SNAP: Soluble NSF att 98.2 0.00089 1.9E-08 54.4 20.9 168 165-342 78-262 (282)
152 PF12895 Apc3: Anaphase-promot 98.2 3.5E-06 7.5E-11 54.4 5.4 81 1-84 2-83 (84)
153 TIGR02795 tol_pal_ybgF tol-pal 98.2 9.3E-05 2E-09 51.4 13.1 97 246-343 4-105 (119)
154 PF05843 Suf: Suppressor of fo 98.2 4.6E-05 1E-09 61.5 13.0 143 198-357 2-148 (280)
155 TIGR02795 tol_pal_ybgF tol-pal 98.2 6E-05 1.3E-09 52.3 11.9 101 24-130 2-106 (119)
156 PRK15363 pathogenicity island 98.2 2.9E-05 6.2E-10 55.2 10.0 86 1-89 48-133 (157)
157 PLN03088 SGT1, suppressor of 98.2 3.4E-05 7.4E-10 64.6 12.0 86 1-89 15-100 (356)
158 PF01535 PPR: PPR repeat; Int 98.2 2E-06 4.4E-11 43.4 3.0 30 316-345 2-31 (31)
159 PF10037 MRP-S27: Mitochondria 98.2 5E-05 1.1E-09 63.9 12.7 122 159-292 63-186 (429)
160 KOG0553 TPR repeat-containing 98.2 3.8E-05 8.2E-10 59.9 11.0 102 254-359 91-192 (304)
161 PRK02603 photosystem I assembl 98.2 0.00025 5.4E-09 52.9 15.1 99 20-125 31-131 (172)
162 PRK15363 pathogenicity island 98.2 0.00035 7.5E-09 49.8 14.7 103 247-351 38-141 (157)
163 PF08579 RPM2: Mitochondrial r 98.1 4.5E-05 9.7E-10 50.3 9.2 80 27-112 28-116 (120)
164 PF14559 TPR_19: Tetratricopep 98.1 1E-05 2.2E-10 49.8 6.0 61 1-65 4-64 (68)
165 PF14938 SNAP: Soluble NSF att 98.1 0.00021 4.6E-09 58.0 15.3 139 197-361 94-247 (282)
166 PF12895 Apc3: Anaphase-promot 98.1 3.1E-05 6.6E-10 49.9 8.4 81 257-339 2-83 (84)
167 PF01535 PPR: PPR repeat; Int 98.1 5.4E-06 1.2E-10 41.8 3.6 30 26-55 2-31 (31)
168 PF05843 Suf: Suppressor of fo 98.1 0.00022 4.8E-09 57.7 13.9 145 25-205 2-148 (280)
169 KOG2053 Mitochondrial inherita 98.0 0.0097 2.1E-07 53.9 25.0 218 111-344 20-256 (932)
170 KOG0553 TPR repeat-containing 98.0 6.4E-05 1.4E-09 58.7 9.6 96 1-107 94-189 (304)
171 PRK10153 DNA-binding transcrip 98.0 0.00048 1.1E-08 60.5 15.7 119 3-131 357-484 (517)
172 PF12688 TPR_5: Tetratrico pep 98.0 0.00099 2.2E-08 45.7 13.9 106 250-361 7-118 (120)
173 PRK10866 outer membrane biogen 98.0 0.0048 1E-07 48.7 20.3 182 23-223 31-238 (243)
174 PF06239 ECSIT: Evolutionarily 98.0 0.00042 9.1E-09 51.9 12.4 100 8-116 34-154 (228)
175 PRK10153 DNA-binding transcrip 98.0 0.001 2.3E-08 58.4 17.0 143 192-352 332-489 (517)
176 COG4235 Cytochrome c biogenesi 97.9 0.00079 1.7E-08 53.1 14.2 116 5-130 139-257 (287)
177 PRK02603 photosystem I assembl 97.9 0.0012 2.7E-08 49.2 15.1 48 246-294 74-121 (172)
178 CHL00033 ycf3 photosystem I as 97.9 0.00034 7.3E-09 52.0 11.8 116 4-126 15-139 (168)
179 PF13432 TPR_16: Tetratricopep 97.9 6.2E-05 1.3E-09 45.7 6.5 50 2-53 11-60 (65)
180 COG4235 Cytochrome c biogenesi 97.9 0.0012 2.7E-08 52.0 14.8 113 241-357 153-268 (287)
181 PF06239 ECSIT: Evolutionarily 97.9 0.00031 6.6E-09 52.6 10.8 87 242-328 45-152 (228)
182 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.011 2.4E-07 49.4 27.1 95 244-341 397-493 (660)
183 PF14559 TPR_19: Tetratricopep 97.9 0.0001 2.2E-09 45.2 6.8 52 256-308 3-54 (68)
184 PF13432 TPR_16: Tetratricopep 97.8 0.00012 2.7E-09 44.4 6.9 56 286-342 4-59 (65)
185 KOG0550 Molecular chaperone (D 97.8 0.011 2.5E-07 48.7 19.4 256 30-308 55-350 (486)
186 CHL00033 ycf3 photosystem I as 97.8 0.00086 1.9E-08 49.8 12.5 65 162-226 35-101 (168)
187 PF03704 BTAD: Bacterial trans 97.8 0.0011 2.5E-08 47.9 12.8 73 281-354 64-141 (146)
188 PF13414 TPR_11: TPR repeat; P 97.8 0.00014 3E-09 44.8 6.5 62 280-342 4-66 (69)
189 PF13414 TPR_11: TPR repeat; P 97.8 0.00015 3.2E-09 44.7 6.3 65 23-88 2-67 (69)
190 PF12688 TPR_5: Tetratrico pep 97.7 0.0023 5.1E-08 43.9 12.4 94 27-127 4-102 (120)
191 PRK10866 outer membrane biogen 97.7 0.0038 8.3E-08 49.3 15.1 165 1-190 45-240 (243)
192 KOG2796 Uncharacterized conser 97.7 0.016 3.5E-07 44.9 19.5 148 164-321 179-326 (366)
193 KOG1130 Predicted G-alpha GTPa 97.6 0.0054 1.2E-07 50.6 13.9 278 33-342 26-343 (639)
194 PRK15331 chaperone protein Sic 97.5 0.0013 2.7E-08 47.2 9.1 85 1-88 50-134 (165)
195 PRK10803 tol-pal system protei 97.5 0.003 6.6E-08 50.3 12.4 100 25-130 144-247 (263)
196 PF13371 TPR_9: Tetratricopept 97.5 0.00085 1.8E-08 41.8 7.4 54 288-342 4-57 (73)
197 COG4700 Uncharacterized protei 97.5 0.023 5E-07 41.6 18.3 132 56-221 86-217 (251)
198 PF13525 YfiO: Outer membrane 97.5 0.03 6.6E-07 43.0 16.7 172 24-216 5-197 (203)
199 KOG0550 Molecular chaperone (D 97.4 0.036 7.8E-07 45.9 17.2 265 66-343 56-350 (486)
200 COG4700 Uncharacterized protei 97.4 0.025 5.4E-07 41.5 16.6 104 20-129 86-189 (251)
201 PF12921 ATP13: Mitochondrial 97.4 0.004 8.7E-08 43.2 10.3 81 243-323 1-97 (126)
202 PF03704 BTAD: Bacterial trans 97.4 0.0014 3.1E-08 47.3 8.6 71 246-317 64-139 (146)
203 PRK10803 tol-pal system protei 97.4 0.0061 1.3E-07 48.6 12.5 103 245-350 144-251 (263)
204 COG3898 Uncharacterized membra 97.4 0.06 1.3E-06 44.4 24.5 83 1-89 133-218 (531)
205 PF13371 TPR_9: Tetratricopept 97.3 0.0019 4.2E-08 40.1 7.5 57 32-89 3-59 (73)
206 PF13424 TPR_12: Tetratricopep 97.3 0.00059 1.3E-08 43.2 4.6 68 60-128 6-74 (78)
207 PF13525 YfiO: Outer membrane 97.2 0.057 1.2E-06 41.5 20.9 174 63-264 9-198 (203)
208 COG3898 Uncharacterized membra 97.2 0.087 1.9E-06 43.5 28.3 275 2-308 98-392 (531)
209 KOG2114 Vacuolar assembly/sort 97.2 0.051 1.1E-06 49.2 17.0 69 283-355 709-781 (933)
210 PRK15331 chaperone protein Sic 97.2 0.0078 1.7E-07 43.3 9.7 96 26-129 39-134 (165)
211 KOG1538 Uncharacterized conser 97.2 0.091 2E-06 46.4 17.4 223 103-343 601-846 (1081)
212 KOG1130 Predicted G-alpha GTPa 97.2 0.036 7.8E-07 46.0 14.3 288 1-307 30-343 (639)
213 PF12921 ATP13: Mitochondrial 97.1 0.013 2.8E-07 40.8 10.2 100 99-210 1-101 (126)
214 PF13424 TPR_12: Tetratricopep 97.1 0.0024 5.1E-08 40.3 5.9 61 281-341 7-73 (78)
215 PF04840 Vps16_C: Vps16, C-ter 97.1 0.13 2.8E-06 42.5 24.1 106 199-336 179-284 (319)
216 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.012 2.6E-07 49.7 10.8 67 20-88 71-141 (453)
217 KOG2796 Uncharacterized conser 97.0 0.11 2.3E-06 40.6 21.4 141 201-356 181-326 (366)
218 COG3118 Thioredoxin domain-con 96.9 0.11 2.3E-06 41.4 14.3 52 34-86 144-195 (304)
219 KOG2041 WD40 repeat protein [G 96.9 0.32 7E-06 43.5 21.2 200 96-306 848-1084(1189)
220 PF09205 DUF1955: Domain of un 96.8 0.08 1.7E-06 36.5 13.9 64 246-310 88-151 (161)
221 KOG0543 FKBP-type peptidyl-pro 96.8 0.029 6.2E-07 46.4 11.1 108 251-361 215-336 (397)
222 PF10300 DUF3808: Protein of u 96.8 0.33 7.2E-06 42.7 18.4 163 165-342 191-375 (468)
223 PF04053 Coatomer_WDAD: Coatom 96.7 0.076 1.6E-06 45.9 13.8 133 24-222 295-427 (443)
224 PF10300 DUF3808: Protein of u 96.7 0.37 8.1E-06 42.4 21.8 116 142-272 248-375 (468)
225 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.05 1.1E-06 46.2 12.0 66 242-308 73-141 (453)
226 PF13281 DUF4071: Domain of un 96.7 0.31 6.6E-06 40.9 21.4 169 100-274 141-335 (374)
227 KOG3941 Intermediate in Toll s 96.6 0.03 6.4E-07 44.0 9.3 102 242-362 65-171 (406)
228 KOG0543 FKBP-type peptidyl-pro 96.6 0.09 1.9E-06 43.6 12.4 98 244-343 257-355 (397)
229 PF07079 DUF1347: Protein of u 96.6 0.39 8.5E-06 40.7 28.4 59 289-354 472-530 (549)
230 KOG1585 Protein required for f 96.6 0.24 5.3E-06 38.2 17.4 211 101-337 32-250 (308)
231 PF04840 Vps16_C: Vps16, C-ter 96.5 0.39 8.4E-06 39.7 24.5 124 163-324 178-301 (319)
232 KOG2610 Uncharacterized conser 96.4 0.081 1.8E-06 42.7 11.0 116 1-126 116-235 (491)
233 COG3629 DnrI DNA-binding trans 96.4 0.063 1.4E-06 42.8 10.3 79 244-323 153-236 (280)
234 KOG2280 Vacuolar assembly/sort 96.4 0.73 1.6E-05 41.7 21.8 109 197-336 684-792 (829)
235 PF13428 TPR_14: Tetratricopep 96.2 0.013 2.8E-07 32.0 4.2 40 25-65 2-41 (44)
236 KOG4555 TPR repeat-containing 96.2 0.091 2E-06 36.1 8.7 88 1-90 56-146 (175)
237 KOG2610 Uncharacterized conser 96.2 0.24 5.3E-06 40.1 12.5 117 138-269 114-234 (491)
238 PF04053 Coatomer_WDAD: Coatom 96.2 0.35 7.5E-06 42.0 14.4 161 66-270 268-428 (443)
239 PF13281 DUF4071: Domain of un 96.1 0.67 1.5E-05 38.9 19.4 170 165-349 144-339 (374)
240 PF13431 TPR_17: Tetratricopep 96.1 0.0091 2E-07 30.5 2.8 32 11-44 2-33 (34)
241 KOG3941 Intermediate in Toll s 96.0 0.032 7E-07 43.8 6.7 73 2-75 86-174 (406)
242 PRK11906 transcriptional regul 96.0 0.37 8.1E-06 41.2 13.3 119 3-129 273-401 (458)
243 PF13428 TPR_14: Tetratricopep 95.9 0.04 8.6E-07 30.1 5.3 27 282-308 4-30 (44)
244 COG1729 Uncharacterized protei 95.9 0.37 8.1E-06 38.0 12.0 98 245-343 143-244 (262)
245 KOG1258 mRNA processing protei 95.8 1.2 2.6E-05 39.3 31.8 118 5-129 62-180 (577)
246 COG5107 RNA14 Pre-mRNA 3'-end 95.8 1 2.2E-05 38.4 21.0 210 69-308 312-531 (660)
247 COG4649 Uncharacterized protei 95.8 0.5 1.1E-05 34.5 12.0 125 60-195 60-200 (221)
248 PF13512 TPR_18: Tetratricopep 95.8 0.25 5.4E-06 34.9 9.7 71 1-71 23-94 (142)
249 COG4649 Uncharacterized protei 95.7 0.52 1.1E-05 34.4 12.5 61 26-87 61-122 (221)
250 COG3629 DnrI DNA-binding trans 95.6 0.19 4.2E-06 40.1 9.9 80 279-359 153-237 (280)
251 PF13512 TPR_18: Tetratricopep 95.6 0.47 1E-05 33.6 10.6 80 245-325 12-93 (142)
252 COG1729 Uncharacterized protei 95.6 0.6 1.3E-05 36.9 12.1 99 26-130 144-245 (262)
253 PF13170 DUF4003: Protein of u 95.6 1.1 2.3E-05 36.8 19.0 137 178-322 78-225 (297)
254 PF09613 HrpB1_HrpK: Bacterial 95.3 0.72 1.6E-05 33.4 11.1 81 3-87 25-105 (160)
255 smart00299 CLH Clathrin heavy 95.3 0.7 1.5E-05 33.0 15.2 128 164-326 9-137 (140)
256 PF09613 HrpB1_HrpK: Bacterial 95.3 0.76 1.6E-05 33.3 12.4 103 246-351 9-114 (160)
257 smart00299 CLH Clathrin heavy 95.2 0.74 1.6E-05 32.9 14.3 128 199-361 9-137 (140)
258 KOG2114 Vacuolar assembly/sort 95.2 2.4 5.2E-05 39.2 15.9 213 23-271 282-517 (933)
259 cd00923 Cyt_c_Oxidase_Va Cytoc 95.1 0.26 5.5E-06 31.9 7.3 45 262-306 25-69 (103)
260 COG4105 ComL DNA uptake lipopr 95.1 1.3 2.7E-05 34.8 18.6 181 24-223 34-230 (254)
261 PF13176 TPR_7: Tetratricopept 95.0 0.067 1.5E-06 27.6 4.0 26 26-51 1-26 (36)
262 PF04184 ST7: ST7 protein; In 95.0 2.1 4.6E-05 37.1 18.4 149 172-324 178-341 (539)
263 PF00637 Clathrin: Region in C 95.0 0.0056 1.2E-07 44.0 -0.4 130 28-177 11-140 (143)
264 KOG4555 TPR repeat-containing 94.9 0.8 1.7E-05 31.7 11.5 109 140-251 56-167 (175)
265 PF02284 COX5A: Cytochrome c o 94.9 0.22 4.8E-06 32.5 6.7 46 262-307 28-73 (108)
266 PF13176 TPR_7: Tetratricopept 94.9 0.068 1.5E-06 27.6 3.7 27 316-342 1-27 (36)
267 PF00515 TPR_1: Tetratricopept 94.6 0.092 2E-06 26.5 3.8 28 315-342 2-29 (34)
268 KOG2041 WD40 repeat protein [G 94.6 3.5 7.6E-05 37.5 22.4 32 20-52 689-720 (1189)
269 TIGR02561 HrpB1_HrpK type III 94.3 1.3 2.8E-05 31.6 9.9 92 35-128 21-121 (153)
270 PF08631 SPO22: Meiosis protei 94.3 2.4 5.2E-05 34.5 23.8 217 111-341 4-273 (278)
271 PRK11906 transcriptional regul 94.3 1.5 3.2E-05 37.8 12.0 113 3-125 319-432 (458)
272 COG1747 Uncharacterized N-term 94.3 3.3 7.2E-05 36.1 19.8 181 14-206 56-248 (711)
273 PF13431 TPR_17: Tetratricopep 94.3 0.065 1.4E-06 27.3 2.7 23 276-298 10-32 (34)
274 PF00515 TPR_1: Tetratricopept 94.3 0.17 3.6E-06 25.5 4.4 29 25-53 2-30 (34)
275 KOG1941 Acetylcholine receptor 94.2 2.8 6.1E-05 34.8 15.1 127 137-271 132-273 (518)
276 PF08631 SPO22: Meiosis protei 94.2 2.6 5.7E-05 34.3 23.0 216 1-223 6-272 (278)
277 PF07719 TPR_2: Tetratricopept 94.1 0.19 4E-06 25.3 4.4 29 25-53 2-30 (34)
278 COG3118 Thioredoxin domain-con 94.1 2.5 5.5E-05 34.0 17.0 56 66-128 141-196 (304)
279 PF10602 RPN7: 26S proteasome 94.1 1.1 2.3E-05 33.6 9.8 98 245-342 37-141 (177)
280 KOG1585 Protein required for f 94.0 2.3 5E-05 33.2 18.5 216 24-302 31-250 (308)
281 KOG2280 Vacuolar assembly/sort 93.9 5.1 0.00011 36.7 23.4 87 245-341 685-771 (829)
282 PF10602 RPN7: 26S proteasome 93.7 0.8 1.7E-05 34.2 8.7 64 61-128 38-101 (177)
283 KOG1920 IkappaB kinase complex 93.7 7.3 0.00016 37.8 22.8 16 112-127 863-878 (1265)
284 PF07719 TPR_2: Tetratricopept 93.7 0.18 4E-06 25.3 3.8 27 316-342 3-29 (34)
285 PF04184 ST7: ST7 protein; In 93.7 4.5 9.7E-05 35.3 16.1 146 65-223 174-321 (539)
286 KOG4570 Uncharacterized conser 93.5 2 4.2E-05 34.9 10.5 103 239-343 59-164 (418)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 93.4 0.67 1.5E-05 30.0 6.5 63 39-108 22-84 (103)
288 PF07035 Mic1: Colon cancer-as 93.3 2.4 5.2E-05 31.2 14.8 136 182-343 14-149 (167)
289 PF07079 DUF1347: Protein of u 93.3 4.8 0.0001 34.6 22.9 78 8-87 245-326 (549)
290 TIGR02561 HrpB1_HrpK type III 93.3 2.1 4.6E-05 30.5 11.2 54 255-309 21-74 (153)
291 PF02259 FAT: FAT domain; Int 93.2 4.5 9.8E-05 34.1 22.1 66 242-307 144-212 (352)
292 PF13170 DUF4003: Protein of u 93.2 4 8.7E-05 33.5 21.1 136 148-293 83-231 (297)
293 COG4105 ComL DNA uptake lipopr 93.2 3.4 7.3E-05 32.6 19.4 74 110-208 44-117 (254)
294 PF02284 COX5A: Cytochrome c o 93.1 0.6 1.3E-05 30.6 6.0 60 42-108 28-87 (108)
295 PF09205 DUF1955: Domain of un 93.1 2.1 4.6E-05 29.8 13.3 67 279-346 86-152 (161)
296 KOG1538 Uncharacterized conser 92.8 7.3 0.00016 35.2 17.9 55 27-84 601-657 (1081)
297 PF11207 DUF2989: Protein of u 92.7 1.2 2.6E-05 33.7 8.0 73 5-79 123-198 (203)
298 KOG1550 Extracellular protein 92.4 8.4 0.00018 35.0 19.1 183 143-345 228-428 (552)
299 PF06552 TOM20_plant: Plant sp 92.4 2 4.3E-05 31.8 8.6 112 4-131 7-138 (186)
300 KOG4648 Uncharacterized conser 92.3 0.97 2.1E-05 37.0 7.6 100 252-355 105-204 (536)
301 PF02259 FAT: FAT domain; Int 92.2 6.4 0.00014 33.2 18.9 66 160-225 144-212 (352)
302 PF13374 TPR_10: Tetratricopep 92.1 0.47 1E-05 25.1 4.2 28 25-52 3-30 (42)
303 KOG2396 HAT (Half-A-TPR) repea 92.0 7.9 0.00017 33.8 33.8 80 7-89 90-170 (568)
304 PF13174 TPR_6: Tetratricopept 91.7 0.46 9.9E-06 23.5 3.7 27 27-53 3-29 (33)
305 PF13374 TPR_10: Tetratricopep 91.5 0.55 1.2E-05 24.8 4.1 28 315-342 3-30 (42)
306 PF13181 TPR_8: Tetratricopept 91.3 0.39 8.4E-06 24.1 3.1 27 316-342 3-29 (34)
307 COG4785 NlpI Lipoprotein NlpI, 91.0 5.8 0.00013 30.5 16.0 31 197-227 237-267 (297)
308 PRK15180 Vi polysaccharide bio 90.9 10 0.00022 33.0 12.8 113 112-226 301-420 (831)
309 KOG4570 Uncharacterized conser 90.9 3 6.5E-05 33.9 8.8 96 96-191 60-164 (418)
310 PF08424 NRDE-2: NRDE-2, neces 90.6 9.2 0.0002 32.0 16.1 153 11-193 8-185 (321)
311 COG4455 ImpE Protein of avirul 90.5 2.9 6.3E-05 32.0 8.0 23 248-270 39-61 (273)
312 PF11207 DUF2989: Protein of u 90.5 3.6 7.7E-05 31.2 8.5 79 254-334 117-198 (203)
313 TIGR03504 FimV_Cterm FimV C-te 90.4 0.59 1.3E-05 25.4 3.4 23 285-307 5-27 (44)
314 PF07035 Mic1: Colon cancer-as 90.4 5.6 0.00012 29.3 15.4 32 10-42 16-47 (167)
315 COG4785 NlpI Lipoprotein NlpI, 90.3 6.9 0.00015 30.1 19.7 182 69-274 75-267 (297)
316 KOG4077 Cytochrome c oxidase, 90.2 3.1 6.7E-05 28.6 7.2 40 267-306 72-111 (149)
317 COG3947 Response regulator con 90.1 8.8 0.00019 31.0 16.4 171 178-352 149-356 (361)
318 KOG4648 Uncharacterized conser 90.1 3 6.5E-05 34.3 8.4 92 205-313 105-197 (536)
319 PF06552 TOM20_plant: Plant sp 90.1 4.8 0.0001 29.9 8.7 75 262-345 53-138 (186)
320 PF00637 Clathrin: Region in C 89.9 0.11 2.3E-06 37.4 0.3 111 250-362 13-138 (143)
321 COG4455 ImpE Protein of avirul 89.9 4.1 8.9E-05 31.3 8.4 79 26-109 3-81 (273)
322 COG0457 NrfG FOG: TPR repeat [ 89.9 7.6 0.00017 29.9 26.7 182 37-224 36-229 (291)
323 KOG1941 Acetylcholine receptor 89.7 11 0.00024 31.5 16.2 47 71-121 18-64 (518)
324 KOG4234 TPR repeat-containing 89.6 5.6 0.00012 30.1 8.7 90 31-129 102-197 (271)
325 PF13181 TPR_8: Tetratricopept 89.4 1.3 2.9E-05 22.0 4.2 29 25-53 2-30 (34)
326 KOG4234 TPR repeat-containing 89.2 7 0.00015 29.7 9.0 94 253-350 104-202 (271)
327 COG1747 Uncharacterized N-term 88.6 16 0.00036 32.1 20.2 166 159-343 63-234 (711)
328 COG0457 NrfG FOG: TPR repeat [ 88.1 10 0.00022 29.2 27.2 225 72-342 36-264 (291)
329 PF07721 TPR_4: Tetratricopept 88.0 0.96 2.1E-05 21.1 2.8 22 27-48 4-25 (26)
330 PF13929 mRNA_stabil: mRNA sta 87.9 13 0.00028 30.1 17.6 123 240-362 160-291 (292)
331 PF13762 MNE1: Mitochondrial s 87.6 8.4 0.00018 27.6 11.8 113 211-327 8-128 (145)
332 smart00386 HAT HAT (Half-A-TPR 87.5 1.8 3.9E-05 21.1 3.9 30 2-33 1-30 (33)
333 KOG0276 Vesicle coat complex C 87.5 13 0.00028 33.4 10.9 132 26-188 616-747 (794)
334 KOG1920 IkappaB kinase complex 87.0 33 0.00071 33.8 20.4 31 97-128 788-820 (1265)
335 TIGR03504 FimV_Cterm FimV C-te 86.9 2.3 5E-05 23.1 4.2 22 251-272 6-27 (44)
336 COG2976 Uncharacterized protei 86.9 11 0.00025 28.4 10.5 88 170-274 97-189 (207)
337 KOG1586 Protein required for f 86.9 13 0.00028 29.0 14.9 103 199-309 76-184 (288)
338 KOG2422 Uncharacterized conser 86.8 23 0.0005 31.8 17.1 175 72-246 251-468 (665)
339 PF08424 NRDE-2: NRDE-2, neces 86.6 18 0.00038 30.3 14.7 125 4-131 47-185 (321)
340 PF13174 TPR_6: Tetratricopept 86.6 1.2 2.7E-05 21.9 3.0 24 319-342 5-28 (33)
341 COG5159 RPN6 26S proteasome re 86.4 16 0.00034 29.5 14.7 194 105-306 8-233 (421)
342 COG3947 Response regulator con 86.3 6.5 0.00014 31.7 7.8 60 246-306 281-340 (361)
343 PF11848 DUF3368: Domain of un 86.1 3.7 8E-05 22.8 4.9 35 324-358 12-46 (48)
344 KOG0276 Vesicle coat complex C 85.9 12 0.00026 33.6 9.9 46 35-86 648-693 (794)
345 PF14853 Fis1_TPR_C: Fis1 C-te 85.7 4.7 0.0001 23.0 5.2 34 321-356 8-41 (53)
346 PF10345 Cohesin_load: Cohesin 85.7 30 0.00065 32.1 28.2 186 23-224 29-252 (608)
347 KOG1550 Extracellular protein 85.2 30 0.00064 31.6 24.7 113 4-130 228-358 (552)
348 KOG2471 TPR repeat-containing 85.1 26 0.00056 30.8 16.5 104 2-113 254-382 (696)
349 PF13762 MNE1: Mitochondrial s 84.9 12 0.00026 26.8 10.4 81 281-361 41-127 (145)
350 PRK15180 Vi polysaccharide bio 84.4 28 0.0006 30.5 24.7 91 32-130 331-421 (831)
351 PF14689 SPOB_a: Sensor_kinase 84.2 3.8 8.1E-05 24.3 4.6 29 314-342 23-51 (62)
352 smart00028 TPR Tetratricopepti 83.6 2.9 6.2E-05 19.7 3.6 29 25-53 2-30 (34)
353 KOG2063 Vacuolar assembly/sort 82.0 51 0.0011 31.8 14.0 192 164-361 506-744 (877)
354 PF10345 Cohesin_load: Cohesin 81.9 44 0.00095 31.0 31.3 330 5-342 38-481 (608)
355 PRK09687 putative lyase; Provi 81.8 27 0.00059 28.5 29.2 59 23-85 36-98 (280)
356 PRK09687 putative lyase; Provi 81.6 27 0.0006 28.5 28.3 236 56-361 34-279 (280)
357 PF11663 Toxin_YhaV: Toxin wit 81.6 2.1 4.6E-05 29.8 3.1 33 35-69 106-138 (140)
358 PF07163 Pex26: Pex26 protein; 81.5 24 0.00053 28.4 9.1 86 30-123 89-181 (309)
359 KOG4077 Cytochrome c oxidase, 81.3 14 0.0003 25.6 6.8 40 232-271 72-111 (149)
360 COG5187 RPN7 26S proteasome re 81.2 28 0.0006 28.3 10.6 98 243-342 114-220 (412)
361 KOG4642 Chaperone-dependent E3 80.4 27 0.00058 27.6 10.9 119 2-126 24-143 (284)
362 KOG1464 COP9 signalosome, subu 80.2 29 0.00063 27.9 19.0 164 165-336 68-253 (440)
363 TIGR02508 type_III_yscG type I 79.7 15 0.00033 24.3 7.1 77 3-89 20-98 (115)
364 cd00280 TRFH Telomeric Repeat 79.5 24 0.00051 26.5 8.1 66 4-72 85-156 (200)
365 PF11846 DUF3366: Domain of un 79.3 9 0.00019 29.1 6.4 59 29-89 113-174 (193)
366 PF08311 Mad3_BUB1_I: Mad3/BUB 79.2 13 0.00028 26.0 6.5 44 42-85 81-125 (126)
367 PRK10941 hypothetical protein; 79.0 33 0.00071 27.8 10.3 77 283-360 185-262 (269)
368 PF10579 Rapsyn_N: Rapsyn N-te 78.7 8.9 0.00019 24.0 4.9 46 291-336 18-65 (80)
369 KOG0376 Serine-threonine phosp 78.5 6 0.00013 34.2 5.5 106 252-361 12-117 (476)
370 PF13929 mRNA_stabil: mRNA sta 78.5 35 0.00075 27.8 15.5 139 176-324 142-288 (292)
371 PF14669 Asp_Glu_race_2: Putat 78.4 27 0.00058 26.4 9.4 56 167-222 137-206 (233)
372 KOG2034 Vacuolar sorting prote 78.0 66 0.0014 30.7 24.0 122 167-297 509-646 (911)
373 KOG4507 Uncharacterized conser 77.4 23 0.00049 31.9 8.6 100 2-111 621-721 (886)
374 PF11846 DUF3366: Domain of un 77.3 16 0.00035 27.7 7.3 32 311-342 141-172 (193)
375 PF10579 Rapsyn_N: Rapsyn N-te 77.2 8.2 0.00018 24.2 4.4 47 36-82 18-66 (80)
376 PF07163 Pex26: Pex26 protein; 77.1 38 0.00081 27.5 9.4 85 251-337 90-181 (309)
377 PRK10564 maltose regulon perip 77.1 5.8 0.00013 32.2 4.8 37 317-353 260-296 (303)
378 COG2909 MalT ATP-dependent tra 76.7 72 0.0016 30.5 27.2 220 110-339 425-684 (894)
379 PF10366 Vps39_1: Vacuolar sor 75.9 22 0.00047 24.1 7.0 27 246-272 41-67 (108)
380 KOG3364 Membrane protein invol 75.5 12 0.00027 26.3 5.3 68 20-89 29-101 (149)
381 PRK10941 hypothetical protein; 75.4 42 0.00092 27.2 9.8 78 27-110 184-261 (269)
382 KOG0890 Protein kinase of the 75.4 1.3E+02 0.0028 32.7 20.5 253 30-309 1455-1732(2382)
383 COG2909 MalT ATP-dependent tra 75.1 80 0.0017 30.3 21.6 199 136-343 424-647 (894)
384 COG0735 Fur Fe2+/Zn2+ uptake r 74.8 28 0.00061 25.1 7.4 60 268-328 10-69 (145)
385 PRK10564 maltose regulon perip 74.6 6.9 0.00015 31.8 4.6 44 20-63 253-296 (303)
386 PF02184 HAT: HAT (Half-A-TPR) 74.3 8.9 0.00019 19.1 3.3 25 329-355 2-26 (32)
387 PF11848 DUF3368: Domain of un 74.2 12 0.00025 20.8 4.2 36 32-67 10-45 (48)
388 COG2976 Uncharacterized protei 73.8 37 0.0008 25.8 14.5 92 251-344 96-189 (207)
389 KOG3807 Predicted membrane pro 73.5 21 0.00046 29.5 7.0 59 65-128 281-339 (556)
390 PF09454 Vps23_core: Vps23 cor 73.1 9.2 0.0002 23.0 3.9 51 20-72 5-55 (65)
391 PF14689 SPOB_a: Sensor_kinase 73.0 17 0.00037 21.6 5.7 46 260-307 6-51 (62)
392 PF07575 Nucleopor_Nup85: Nup8 72.9 24 0.00052 32.3 8.3 144 209-355 371-536 (566)
393 KOG0376 Serine-threonine phosp 72.0 12 0.00026 32.5 5.6 99 2-112 18-117 (476)
394 PHA02875 ankyrin repeat protei 72.0 67 0.0015 28.0 13.2 70 9-83 16-89 (413)
395 PF11838 ERAP1_C: ERAP1-like C 71.7 58 0.0013 27.1 13.0 82 4-88 146-230 (324)
396 PF04097 Nic96: Nup93/Nic96; 71.6 88 0.0019 29.2 19.9 90 169-274 265-357 (613)
397 KOG4567 GTPase-activating prot 71.3 33 0.00073 28.1 7.5 57 264-325 263-319 (370)
398 KOG1586 Protein required for f 71.0 50 0.0011 26.1 18.9 31 252-282 162-192 (288)
399 KOG0890 Protein kinase of the 70.2 1.7E+02 0.0037 31.9 25.9 62 279-343 1670-1731(2382)
400 PF12862 Apc5: Anaphase-promot 69.1 25 0.00054 22.9 5.7 19 69-87 51-69 (94)
401 KOG0686 COP9 signalosome, subu 69.1 75 0.0016 27.4 11.1 99 24-124 150-253 (466)
402 PRK11639 zinc uptake transcrip 68.8 45 0.00097 24.8 7.6 61 271-332 18-78 (169)
403 COG5108 RPO41 Mitochondrial DN 68.7 41 0.00088 31.0 8.2 91 249-342 33-131 (1117)
404 PF11663 Toxin_YhaV: Toxin wit 68.4 8.1 0.00017 27.1 3.2 32 138-171 106-137 (140)
405 cd00280 TRFH Telomeric Repeat 67.7 50 0.0011 24.9 10.1 83 2-87 30-139 (200)
406 KOG4507 Uncharacterized conser 67.3 58 0.0012 29.6 8.7 28 246-273 678-705 (886)
407 KOG1258 mRNA processing protei 67.3 99 0.0021 28.1 28.4 305 23-343 44-395 (577)
408 cd08819 CARD_MDA5_2 Caspase ac 67.3 31 0.00066 22.2 6.3 65 43-119 21-85 (88)
409 PF14561 TPR_20: Tetratricopep 67.2 31 0.00068 22.3 9.1 64 10-75 10-74 (90)
410 PF09454 Vps23_core: Vps23 cor 67.2 19 0.0004 21.7 4.3 49 242-291 6-54 (65)
411 COG0735 Fur Fe2+/Zn2+ uptake r 66.7 39 0.00085 24.3 6.7 64 9-74 7-70 (145)
412 KOG1308 Hsp70-interacting prot 66.7 5.3 0.00012 32.9 2.5 94 256-352 126-220 (377)
413 KOG2066 Vacuolar assembly/sort 66.1 1.2E+02 0.0026 28.7 25.4 162 2-190 370-533 (846)
414 KOG0991 Replication factor C, 65.2 67 0.0015 25.4 12.5 92 231-326 181-284 (333)
415 KOG1308 Hsp70-interacting prot 65.2 4.6 0.0001 33.3 1.9 84 2-89 128-212 (377)
416 KOG0991 Replication factor C, 64.5 70 0.0015 25.3 10.6 111 172-290 169-283 (333)
417 PF10255 Paf67: RNA polymerase 64.5 54 0.0012 28.4 8.0 61 281-341 124-191 (404)
418 PF11817 Foie-gras_1: Foie gra 64.0 74 0.0016 25.4 8.6 62 280-341 179-245 (247)
419 cd07153 Fur_like Ferric uptake 63.9 25 0.00054 23.9 5.2 47 285-331 6-52 (116)
420 PF07575 Nucleopor_Nup85: Nup8 63.7 1.2E+02 0.0027 27.9 16.9 66 278-345 404-469 (566)
421 PF11817 Foie-gras_1: Foie gra 63.7 37 0.0008 27.1 6.7 64 63-127 182-245 (247)
422 PF09477 Type_III_YscG: Bacter 63.5 43 0.00093 22.6 8.5 79 3-89 21-99 (116)
423 PF01475 FUR: Ferric uptake re 63.3 20 0.00044 24.6 4.7 44 285-328 13-56 (120)
424 KOG0687 26S proteasome regulat 63.1 89 0.0019 26.1 11.6 26 62-87 107-132 (393)
425 KOG0686 COP9 signalosome, subu 62.7 1E+02 0.0022 26.6 14.7 184 163-357 151-352 (466)
426 KOG4567 GTPase-activating prot 61.7 92 0.002 25.8 8.5 72 229-305 263-344 (370)
427 KOG1464 COP9 signalosome, subu 61.2 87 0.0019 25.3 18.0 221 53-300 20-252 (440)
428 smart00777 Mad3_BUB1_I Mad3/BU 61.0 24 0.00052 24.6 4.5 43 41-83 80-123 (125)
429 TIGR02508 type_III_yscG type I 60.8 47 0.001 22.1 9.1 88 259-354 20-107 (115)
430 PF12862 Apc5: Anaphase-promot 60.5 44 0.00096 21.7 6.5 18 324-341 51-68 (94)
431 PF11123 DNA_Packaging_2: DNA 60.2 38 0.00082 20.8 4.7 34 3-38 12-45 (82)
432 PF09670 Cas_Cas02710: CRISPR- 59.7 1.2E+02 0.0025 26.3 10.1 53 34-87 141-197 (379)
433 cd08819 CARD_MDA5_2 Caspase ac 59.1 46 0.00099 21.4 6.9 67 6-79 20-86 (88)
434 PF09986 DUF2225: Uncharacteri 59.1 84 0.0018 24.5 8.0 64 4-67 141-208 (214)
435 KOG4642 Chaperone-dependent E3 58.7 91 0.002 24.8 11.2 102 207-324 20-127 (284)
436 COG5108 RPO41 Mitochondrial DN 58.6 1.6E+02 0.0034 27.5 10.3 48 167-214 33-82 (1117)
437 PRK09462 fur ferric uptake reg 58.4 67 0.0015 23.2 7.7 60 270-330 8-68 (148)
438 PF09868 DUF2095: Uncharacteri 58.3 39 0.00085 22.9 4.8 30 30-60 67-96 (128)
439 PF10963 DUF2765: Protein of u 57.8 47 0.001 21.2 5.5 33 193-225 12-44 (83)
440 PRK09857 putative transposase; 57.5 1.1E+02 0.0024 25.3 8.9 66 282-348 209-274 (292)
441 smart00777 Mad3_BUB1_I Mad3/BU 57.3 64 0.0014 22.6 6.2 12 78-89 82-93 (125)
442 COG5191 Uncharacterized conser 57.0 30 0.00064 28.5 5.0 80 19-106 102-182 (435)
443 PHA02875 ankyrin repeat protei 56.8 1.3E+02 0.0029 26.1 12.1 71 108-186 7-89 (413)
444 KOG3364 Membrane protein invol 55.2 74 0.0016 22.6 10.0 66 277-342 30-99 (149)
445 KOG2297 Predicted translation 54.9 1.2E+02 0.0026 25.1 12.0 156 146-334 186-341 (412)
446 PRK11619 lytic murein transgly 54.9 1.9E+02 0.0041 27.3 26.0 80 260-342 295-374 (644)
447 KOG0545 Aryl-hydrocarbon recep 52.8 1.2E+02 0.0026 24.3 9.6 95 252-349 186-297 (329)
448 PF15297 CKAP2_C: Cytoskeleton 52.8 79 0.0017 26.6 6.8 62 6-70 121-186 (353)
449 COG5187 RPN7 26S proteasome re 52.5 1.3E+02 0.0028 24.7 11.5 74 59-134 115-189 (412)
450 KOG1839 Uncharacterized protei 52.0 2.1E+02 0.0046 29.0 10.4 160 174-338 944-1123(1236)
451 KOG1839 Uncharacterized protei 52.0 2.8E+02 0.006 28.3 11.1 147 96-267 969-1122(1236)
452 COG5191 Uncharacterized conser 51.9 57 0.0012 27.0 5.8 79 241-321 104-183 (435)
453 COG4003 Uncharacterized protei 51.2 57 0.0012 20.5 4.4 31 29-60 36-66 (98)
454 PF04190 DUF410: Protein of un 51.1 1.3E+02 0.0029 24.3 18.6 143 34-191 20-170 (260)
455 COG5159 RPN6 26S proteasome re 50.9 1.4E+02 0.003 24.5 12.4 130 168-305 9-151 (421)
456 PF09477 Type_III_YscG: Bacter 50.8 76 0.0016 21.5 9.8 88 257-352 19-106 (116)
457 PF12926 MOZART2: Mitotic-spin 50.4 66 0.0014 20.7 7.7 42 300-341 29-70 (88)
458 PF14853 Fis1_TPR_C: Fis1 C-te 49.5 49 0.0011 18.9 5.4 34 28-63 5-38 (53)
459 KOG1524 WD40 repeat-containing 49.3 1.4E+02 0.0031 26.8 8.0 100 159-269 570-669 (737)
460 PRK11639 zinc uptake transcrip 48.6 1.1E+02 0.0024 22.7 7.5 62 13-76 16-77 (169)
461 cd07153 Fur_like Ferric uptake 48.3 54 0.0012 22.3 4.8 49 167-215 5-53 (116)
462 PRK09462 fur ferric uptake reg 47.1 1.1E+02 0.0023 22.1 6.8 62 233-295 6-68 (148)
463 KOG2582 COP9 signalosome, subu 46.5 1.9E+02 0.0041 24.7 16.8 54 255-308 288-345 (422)
464 PF11838 ERAP1_C: ERAP1-like C 46.4 1.7E+02 0.0037 24.3 19.3 87 260-349 146-237 (324)
465 COG0790 FOG: TPR repeat, SEL1 45.7 1.7E+02 0.0036 24.0 18.4 201 1-214 54-289 (292)
466 KOG2063 Vacuolar assembly/sort 45.7 3E+02 0.0066 27.0 16.9 38 171-208 600-637 (877)
467 PF03745 DUF309: Domain of unk 45.4 65 0.0014 19.1 6.2 46 291-336 11-61 (62)
468 PF14561 TPR_20: Tetratricopep 45.3 83 0.0018 20.4 8.5 54 276-329 19-73 (90)
469 KOG4521 Nuclear pore complex, 45.2 3.5E+02 0.0075 27.5 13.1 99 162-267 1021-1125(1480)
470 PF12926 MOZART2: Mitotic-spin 44.1 86 0.0019 20.2 5.8 65 23-89 9-73 (88)
471 PF02607 B12-binding_2: B12 bi 43.4 65 0.0014 19.9 4.2 39 290-328 12-50 (79)
472 KOG0545 Aryl-hydrocarbon recep 43.3 1.7E+02 0.0037 23.4 11.7 96 207-308 188-293 (329)
473 PHA00425 DNA packaging protein 43.2 82 0.0018 19.7 4.6 33 4-38 15-47 (88)
474 KOG3636 Uncharacterized conser 43.2 2.3E+02 0.005 24.9 14.7 109 216-325 155-271 (669)
475 PF01475 FUR: Ferric uptake re 42.9 51 0.0011 22.6 4.0 51 165-215 10-60 (120)
476 PRK14962 DNA polymerase III su 42.0 2.6E+02 0.0057 25.1 15.0 121 190-316 191-321 (472)
477 PF15469 Sec5: Exocyst complex 41.9 1.5E+02 0.0032 22.3 8.6 24 105-128 91-114 (182)
478 PF10366 Vps39_1: Vacuolar sor 41.6 1.1E+02 0.0024 20.7 7.7 27 102-128 41-67 (108)
479 cd08315 Death_TRAILR_DR4_DR5 D 40.3 1.1E+02 0.0023 20.2 5.6 48 40-89 47-94 (96)
480 KOG0551 Hsp90 co-chaperone CNS 40.2 2E+02 0.0043 24.3 7.2 90 251-341 88-180 (390)
481 KOG3636 Uncharacterized conser 39.5 2.7E+02 0.0058 24.5 13.9 89 272-361 176-272 (669)
482 COG2405 Predicted nucleic acid 39.3 83 0.0018 22.4 4.3 34 325-358 120-153 (157)
483 PF04090 RNA_pol_I_TF: RNA pol 38.6 1.8E+02 0.004 22.4 7.6 31 244-274 41-71 (199)
484 PF08461 HTH_12: Ribonuclease 38.5 90 0.0019 18.8 4.4 18 292-309 10-27 (66)
485 KOG0687 26S proteasome regulat 38.5 2.4E+02 0.0052 23.7 15.8 96 245-342 105-209 (393)
486 KOG2066 Vacuolar assembly/sort 38.4 3.7E+02 0.0079 25.8 18.8 53 32-86 364-419 (846)
487 PF02847 MA3: MA3 domain; Int 37.9 1.3E+02 0.0027 20.3 8.5 61 248-310 6-68 (113)
488 COG4976 Predicted methyltransf 37.3 1.4E+02 0.003 23.7 5.6 51 2-54 9-59 (287)
489 PF04190 DUF410: Protein of un 37.1 2.3E+02 0.0049 23.0 18.7 101 113-220 3-113 (260)
490 PF05944 Phage_term_smal: Phag 36.4 1.6E+02 0.0034 20.9 8.7 34 102-135 50-83 (132)
491 PF08870 DUF1832: Domain of un 35.8 1.4E+02 0.0031 20.4 5.5 14 345-358 78-91 (113)
492 KOG2471 TPR repeat-containing 35.8 3.3E+02 0.0072 24.5 17.2 107 253-361 249-381 (696)
493 smart00804 TAP_C C-terminal do 35.7 40 0.00087 20.1 2.1 19 3-21 40-58 (63)
494 PRK14951 DNA polymerase III su 35.6 3.8E+02 0.0083 25.2 10.5 91 254-347 180-283 (618)
495 KOG2659 LisH motif-containing 35.4 2.2E+02 0.0048 22.4 9.6 96 23-126 25-129 (228)
496 PF05944 Phage_term_smal: Phag 35.3 1.6E+02 0.0035 20.8 6.5 30 61-90 50-79 (132)
497 KOG1166 Mitotic checkpoint ser 35.1 1E+02 0.0022 30.4 5.7 54 4-57 94-147 (974)
498 KOG2422 Uncharacterized conser 34.9 3.7E+02 0.008 24.8 17.9 162 175-341 251-446 (665)
499 PRK08691 DNA polymerase III su 34.7 4.2E+02 0.009 25.4 11.3 35 236-272 192-226 (709)
500 PF07720 TPR_3: Tetratricopept 34.3 71 0.0015 16.4 3.6 21 27-47 4-24 (36)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-59 Score=424.92 Aligned_cols=331 Identities=18% Similarity=0.262 Sum_probs=219.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+ +.||..+
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~PdvvT 509 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEANVHT 509 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHH
Confidence 5566666666666666666666666666666666666666666666666666666666666666666 5666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch--------hhhccCChHHHHHHHHHHHH--cCCCCchhhHHHHHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQ--RGLNPVIFTYTPLLNGY 172 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~ 172 (363)
|+.+|.+|++.|++++|.++|++|.+.++.|+. .+++.|++++|.++|++|.. .++.||..+|+.+|.+|
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 666666666666666666666666666666664 55666666666666666654 45666666666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH-----------------------H
Q 044256 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-----------------------K 229 (363)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~ 229 (363)
++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+ .
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 66666666666666666666666666666666666666666666655555544332 3
Q ss_pred HHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044256 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
.+++.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...++.||..+|+.||.+|++.|++++|.++|++|...|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044256 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359 (363)
Q Consensus 310 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 359 (363)
+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|++|+..|
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.6e-59 Score=423.12 Aligned_cols=345 Identities=17% Similarity=0.264 Sum_probs=317.2
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|.++|+.|.+.|+.| |..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 478999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCcch--------hhhccCChHHHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD--KGINANT--------LLCKKTKLVEANRLL 150 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--------~~~~~~~~~~a~~~~ 150 (363)
+|+.|.+.+ +.||..+|+.+|.+|++.|++++|.++|++|.. .++.|+. .+++.|++++|.++|
T Consensus 529 lf~~M~~~G------v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 529 AYGIMRSKN------VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHcC------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999988 899999999999999999999999999999986 5678876 788999999999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH--
Q 044256 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-- 228 (363)
Q Consensus 151 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 228 (363)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.+.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred ---------------------HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 044256 229 ---------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287 (363)
Q Consensus 229 ---------------------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 287 (363)
..+|+.|...|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc--CCCCCHHHHHH
Q 044256 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN--GCALDVDTFNT 354 (363)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ 354 (363)
+|++.|++++|.+++++|.+.|+.||..+|+.++..|. +++++|..+.+.+... |...+...|..
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhccccccccchHH
Confidence 99999999999999999999999999999999997654 3577777766555532 22333344544
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-53 Score=382.73 Aligned_cols=343 Identities=18% Similarity=0.253 Sum_probs=218.4
Q ss_pred ChhhhhHHHHHHHHHHcC-CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 044256 1 TSKVLGALMAFGSFIRRC-YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 79 (363)
.|++++|+++|+.|...+ ..| +..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~-~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTL-PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 378899999999998765 556 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch--------hhhccCChHHHHHHHH
Q 044256 80 KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLE 151 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~ 151 (363)
++|++|. .||..+||.++.+|++.|++++|+++|++|.+.|+.|+. .+...|..+.+.+++.
T Consensus 179 ~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 179 RLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred HHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999884 578899999999999999999999999999988887764 3334444444444444
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH---
Q 044256 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--- 228 (363)
Q Consensus 152 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 228 (363)
.+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|..+|++|...++
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 444444444444444444444444444444444444432 2444444444444444444444444444433222
Q ss_pred --------------------HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 044256 229 --------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288 (363)
Q Consensus 229 --------------------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 288 (363)
.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|. .||..+|++||.+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~ 400 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAG 400 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHH
Confidence 2334444444455555555555555555555555555555543 2344555555555
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhhc
Q 044256 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE-NGCALDVDTFNTLMISFLQK 362 (363)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~ 362 (363)
|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|++++.+|++.
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 555555555555555555555555555555555555555555555555555543 25555555555555555544
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-53 Score=382.49 Aligned_cols=338 Identities=20% Similarity=0.255 Sum_probs=257.3
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
++++.|.+++..|.+.|..| |+.+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++
T Consensus 137 ~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~l 211 (697)
T PLN03081 137 KSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFAL 211 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHH
Confidence 56778888888888888888 88888888888888888888888888886 47888888888888888888888888
Q ss_pred HHHHHhccCCCC-----------------------------CccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044256 82 HQEMVNGMGDFG-----------------------------GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132 (363)
Q Consensus 82 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 132 (363)
|++|.+.+...+ .+..||..+|+.|+.+|++.|++++|.++|++|.+.+..
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~v 291 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChh
Confidence 888877661100 013344455555566666666666666666665433222
Q ss_pred cch----hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 044256 133 ANT----LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208 (363)
Q Consensus 133 ~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 208 (363)
... .+++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 211 4556666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 044256 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288 (363)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 288 (363)
+.|++++|.++|++| . .||..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+
T Consensus 372 k~G~~~~A~~vf~~m------------~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 372 KWGRMEDARNVFDRM------------P----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred HCCCHHHHHHHHHhC------------C----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 666666665555444 3 378889999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHhhh-CCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 044256 289 CCKFGIFEIASELFNKLSC-KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363 (363)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 363 (363)
|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++|+.+|..+|
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999976 689999999999999999999999999998765 57899999999999998765
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.5e-53 Score=389.36 Aligned_cols=350 Identities=21% Similarity=0.275 Sum_probs=242.5
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|++++|.++|+.|. .| |..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.++
T Consensus 236 g~~~~A~~lf~~m~----~~-d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l 310 (857)
T PLN03077 236 GDVVSARLVFDRMP----RR-DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310 (857)
T ss_pred CCHHHHHHHHhcCC----CC-CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Confidence 56667777777664 34 66677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch----hhhccCChHHHHHHHHHHHHcC
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT----LLCKKTKLVEANRLLELMMQRG 157 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~ 157 (363)
+..|.+.+ ..||..+|+.|+.+|++.|++++|.++|++|...+..... .+++.|++++|.++|++|.+.|
T Consensus 311 ~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 311 HGYVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHhC------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 77777666 6677777777777777777777777777776543322222 5666777777777777777777
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH---------
Q 044256 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------- 228 (363)
Q Consensus 158 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------- 228 (363)
+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.+.
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~ 464 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777666643321
Q ss_pred ----------HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-----------------------
Q 044256 229 ----------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC----------------------- 275 (363)
Q Consensus 229 ----------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 275 (363)
..+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus 465 ~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 465 LRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 344455543 3555555555555544444444444444444433333
Q ss_pred -------cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHH-HcCCCC
Q 044256 276 -------ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME-ENGCAL 347 (363)
Q Consensus 276 -------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p 347 (363)
.+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|
T Consensus 544 ~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 467778888888888888888888888888888888888888888888888888888888888888 568888
Q ss_pred CHHHHHHHHHHHhhcC
Q 044256 348 DVDTFNTLMISFLQKE 363 (363)
Q Consensus 348 ~~~~~~~ll~~~~~~~ 363 (363)
+..+|++++.+|++.|
T Consensus 624 ~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 624 NLKHYACVVDLLGRAG 639 (857)
T ss_pred chHHHHHHHHHHHhCC
Confidence 8888888888888765
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-52 Score=385.96 Aligned_cols=345 Identities=20% Similarity=0.300 Sum_probs=309.4
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|+++|++|.+.|+.| |..+|+.++.+|.+.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.+
T Consensus 266 ~g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 266 NGECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 478999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch--------hhhccCChHHHHHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLEL 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~ 152 (363)
+|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.|+. .+++.|++++|.++++.
T Consensus 345 vf~~m~----------~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 345 VFSRME----------TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred HHhhCC----------CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 999984 578899999999999999999999999999999999987 67789999999999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH----
Q 044256 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---- 228 (363)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 228 (363)
+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|...-.
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~ 490 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSV 490 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHh
Confidence 99999999999999999999999999999999988864 4677788888888888888888888877753200
Q ss_pred ------------------HHHHHHhHhcCC------------------------------CCChHHHHHHHHHHHhcCCH
Q 044256 229 ------------------KKIFNEMKLCNV------------------------------VPETFTCNIFIDGLCKNGHV 260 (363)
Q Consensus 229 ------------------~~~~~~~~~~~~------------------------------~~~~~~~~~ll~~~~~~~~~ 260 (363)
.+++..+.+.|+ .||..+|+++|.+|++.|+.
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCH
Confidence 222222222222 67888999999999999999
Q ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhh-hCCCCccHHHHHHHHHHHHccCChhHHHHHHHH
Q 044256 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS-CKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339 (363)
Q Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 339 (363)
++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. ..|+.|+..+|+.++.+|++.|++++|.+++++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 689999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhcC
Q 044256 340 MEENGCALDVDTFNTLMISFLQKE 363 (363)
Q Consensus 340 m~~~g~~p~~~~~~~ll~~~~~~~ 363 (363)
|. +.||..+|.+|+.+|..+|
T Consensus 651 m~---~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 651 MP---ITPDPAVWGALLNACRIHR 671 (857)
T ss_pred CC---CCCCHHHHHHHHHHHHHcC
Confidence 84 7999999999999997654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2.9e-24 Score=202.77 Aligned_cols=345 Identities=11% Similarity=0.023 Sum_probs=248.9
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|++++|.+.|+.+.+. .|.+..++..+...+.+.|++++|..+++++...+ +.+...+..++..+...|++++|..+
T Consensus 513 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 6778888888888775 45577778888888888888888888888877654 34555667777777888888888888
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHH
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMM 154 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~ 154 (363)
++.+.... +.+..+|..+..++.+.|++++|...|+++.+....... .+...|++++|...++++.
T Consensus 590 ~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 590 LNEAADAA-------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88777643 556677777778888888888888888777765332111 4556777777777777776
Q ss_pred HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH------
Q 044256 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------ 228 (363)
Q Consensus 155 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------ 228 (363)
+.. +.+..++..+...+...|++++|..+++.+.+.+ +++...+..+...+...|++++|...++.+.....
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 740 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI 740 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHH
Confidence 653 3345666667777777777777777777766653 33555666666666677777777777766654321
Q ss_pred ---------------HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcC
Q 044256 229 ---------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293 (363)
Q Consensus 229 ---------------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 293 (363)
...+..+... .+.+...+..+...|...|++++|...|+++.+.. +.++.++..+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 1222222222 23456777888888888899999999999888775 677888888888888888
Q ss_pred ChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 044256 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363 (363)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 363 (363)
+ .+|...++++.... +-++..+..+...+...|++++|.++++++++.+. .+..++..+..++.+.|
T Consensus 819 ~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 819 D-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATG 885 (899)
T ss_pred c-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcC
Confidence 8 77888888887763 44667777888889999999999999999998653 37888888888887665
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=3.3e-25 Score=188.84 Aligned_cols=300 Identities=12% Similarity=0.022 Sum_probs=210.5
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHhcCChhHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN---VTTCDTLITGLRRTGNMNLT 78 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 78 (363)
|++++|...|..+.+. .|.+..++..+...+...|++++|..+++.+...+..++ ..++..+...+.+.|++++|
T Consensus 49 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 49 EQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred CChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 5566666666666654 444555666666666666666666666666655321111 12345556666666666666
Q ss_pred HHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCC
Q 044256 79 LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL 158 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (363)
..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+..
T Consensus 127 ~~~~~~~l~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------------- 176 (389)
T PRK11788 127 EELFLQLVDEG-------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR----------------------- 176 (389)
T ss_pred HHHHHHHHcCC-------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch-----------------------
Confidence 66666665532 344555666666666666666666666666543211100
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhc
Q 044256 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238 (363)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (363)
......+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++...+.
T Consensus 177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---------- 245 (389)
T PRK11788 177 VEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP---------- 245 (389)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh----------
Confidence 0012245667788889999999999999998763 33456778888999999999999999888875431
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHH
Q 044256 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318 (363)
Q Consensus 239 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (363)
.....+++.++.+|...|++++|.+.++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++
T Consensus 246 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~ 319 (389)
T PRK11788 246 --EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH 319 (389)
T ss_pred --hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence 112456788899999999999999999999876 456666788999999999999999999998876 58888999
Q ss_pred HHHHHHHc---cCChhHHHHHHHHHHHcCCCCCHH
Q 044256 319 ILIHALGK---EGQIKKENYLLLSMEENGCALDVD 350 (363)
Q Consensus 319 ~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ 350 (363)
.++..+.. .|+.+++..++++|.+.++.|+..
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 88887664 568999999999999987777654
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2.2e-23 Score=196.90 Aligned_cols=330 Identities=13% Similarity=0.015 Sum_probs=247.1
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|.+.|+.+.+. .|.+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+.+.|+.++|..
T Consensus 478 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 478 KGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred CCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 47899999999999886 66678889999999999999999999999998875 4567788999999999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELM 153 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~ 153 (363)
.++++.... +.+...+..++..+.+.|++++|..+++++.+....... .+...|++++|...++.+
T Consensus 555 ~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 555 WLEKAAELN-------PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHhC-------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998865 567788889999999999999999999999876543322 667889999999999999
Q ss_pred HHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHH
Q 044256 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233 (363)
Q Consensus 154 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 233 (363)
.+.. +.+...+..+...+.+.|++++|..+++.+.+.. +.+..++..+...+...|++++|..+++.+....
T Consensus 628 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 699 (899)
T TIGR02917 628 LALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH------ 699 (899)
T ss_pred HHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------
Confidence 8764 4466788899999999999999999999998763 4467889999999999999999999999987654
Q ss_pred HhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCcc
Q 044256 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313 (363)
Q Consensus 234 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (363)
+.+...+..+...+...|++++|.+.|+.+.... |+..++..++.++.+.|++++|.+.++.+.+.. +.+
T Consensus 700 -------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 700 -------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred -------cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 2344445555555555666666666666555442 223444555555555555555555555555442 334
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044256 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359 (363)
Q Consensus 314 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 359 (363)
...+..+...|...|++++|..+|+++.+.. +++...+..+...+
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLY 814 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5555555555555555555555555555532 23344444444433
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=9.3e-22 Score=175.74 Aligned_cols=316 Identities=13% Similarity=0.050 Sum_probs=264.0
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
+|++++|..+++..+.. .|.++..+..++.+....|++++|+..|+++.+.. +.+...+..+...+...|++++|..
T Consensus 55 ~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 55 KDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred cCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 48899999999999987 66678888888888999999999999999999874 4456678888899999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch------hhhccCChHHHHHHHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLELMM 154 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~ 154 (363)
.++++.+.. +.+...+..+..++...|++++|...++.+....+.+.. .+...|++++|...++.+.
T Consensus 132 ~l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 132 LAEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999854 556788899999999999999999999988776544433 4567899999999999988
Q ss_pred HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH----HHHHHHHHHHhhHHH
Q 044256 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE----AMNVSREMILNGFKK 230 (363)
Q Consensus 155 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~ 230 (363)
+....++...+..+...+...|++++|+..++...+.. +.+...+..+...+...|++++ |...++++....
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--- 280 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--- 280 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC---
Confidence 77544444555666788899999999999999998874 3467778888999999999986 787777776654
Q ss_pred HHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 044256 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310 (363)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 310 (363)
+.+...+..+...+...|++++|...++++.... +.+...+..+..++.+.|++++|...++.+...+
T Consensus 281 ----------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~- 348 (656)
T PRK15174 281 ----------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK- 348 (656)
T ss_pred ----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 2356688889999999999999999999999875 5667788889999999999999999999998763
Q ss_pred CccH-HHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 311 VADV-VAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 311 ~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
|+. ..+..+..++...|++++|...|++..+.
T Consensus 349 -P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 -GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 443 34444567889999999999999999875
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.1e-21 Score=165.54 Aligned_cols=280 Identities=16% Similarity=0.141 Sum_probs=227.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC---chhhHHH
Q 044256 29 SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP---NVFCYGS 105 (363)
Q Consensus 29 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 105 (363)
.....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.... ..+ ...++..
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~~~~~ 112 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP------DLTREQRLLALQE 112 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC------CCCHHHHHHHHHH
Confidence 33445678899999999999999874 3455678889999999999999999999988743 111 2356788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 044256 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185 (363)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 185 (363)
+...|.+.|+++.|..+|+++.+.. +++..++..++..+.+.|++++|.+.+
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEG----------------------------DFAEGALQQLLEIYQQEKDWQKAIDVA 164 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCC----------------------------cchHHHHHHHHHHHHHhchHHHHHHHH
Confidence 8999999999999999999987531 345678899999999999999999999
Q ss_pred HHHHHcCCCCc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHH
Q 044256 186 DSMARKGFMPD----VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261 (363)
Q Consensus 186 ~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 261 (363)
+.+.+.+..+. ...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------p~~~~~~~~la~~~~~~g~~~ 231 (389)
T PRK11788 165 ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-------------PQCVRASILLGDLALAQGDYA 231 (389)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-------------cCCHHHHHHHHHHHHHCCCHH
Confidence 99988753332 1245567777889999999999988877643 234557778889999999999
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 044256 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341 (363)
Q Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 341 (363)
+|.++++++...+......++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.
T Consensus 232 ~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 232 AAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred HHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999987642333567889999999999999999999999886 4666777889999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHh
Q 044256 342 ENGCALDVDTFNTLMISFL 360 (363)
Q Consensus 342 ~~g~~p~~~~~~~ll~~~~ 360 (363)
+. .|+..++..++..+.
T Consensus 310 ~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 310 RR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred Hh--CcCHHHHHHHHHHhh
Confidence 84 799999998887665
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=8.6e-19 Score=156.88 Aligned_cols=281 Identities=11% Similarity=0.026 Sum_probs=230.9
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|...|+.+.+. .|.++..+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|..
T Consensus 89 ~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHH
Confidence 48999999999999997 88789999999999999999999999999999863 3456678889999999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch--------hhhccCChHHHHHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLEL 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~ 152 (363)
.++.+.... +.+...+..+ ..+.+.|++++|...++.+.+....+.. .+...|++++|...++.
T Consensus 166 ~~~~~~~~~-------P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 166 LARTQAQEV-------PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred HHHHHHHhC-------CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999887753 3334444443 3478899999999999998876432221 56678999999999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH
Q 044256 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNV----AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228 (363)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (363)
+.... +.+...+..+...+...|++++ |...|+...+.. +.+...+..+...+...|++++|...+++.....
T Consensus 238 al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~- 314 (656)
T PRK15174 238 ALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH- 314 (656)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 99875 4457788889999999999986 899999988763 3366788899999999999999999988887654
Q ss_pred HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
+.+...+..+..++...|++++|...++.+...+ +.+...+..+..++...|+.++|...|++..+.
T Consensus 315 ------------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 315 ------------PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2345567778899999999999999999998764 333344555677889999999999999998876
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=3.4e-18 Score=153.42 Aligned_cols=287 Identities=14% Similarity=0.019 Sum_probs=180.7
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|+..|+.+++. .| ++..|..+..+|.+.|++++|++.+++.++.. +.+...|..+..++...|++++|+.
T Consensus 140 ~~~~~~Ai~~y~~al~~--~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIEC--KP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred cCCHHHHHHHHHHHHhc--CC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 37899999999999986 78 78899999999999999999999999999874 3356688889999999999999987
Q ss_pred HHHHHHhccCCCC-----------------------CccCCchhhHHHH------------------------------H
Q 044256 81 LHQEMVNGMGDFG-----------------------GIYKPNVFCYGSL------------------------------I 107 (363)
Q Consensus 81 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l------------------------------l 107 (363)
.|..........+ ...+++...+..+ +
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (615)
T TIGR00990 216 DLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQL 295 (615)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchH
Confidence 6654432110000 0000110011100 0
Q ss_pred HHH------HhcCCHHHHHHHHHHHHHcC-CCcch---------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 044256 108 DGL------CKDRLVDQTKDLFMEMKDKG-INANT---------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171 (363)
Q Consensus 108 ~~~------~~~~~~~~a~~~~~~~~~~~-~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (363)
... ...+++++|.+.|++..+.+ ..|.. .+...|++++|...+++.++.. +.+...|..+...
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~ 374 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 000 11246777777777777654 22322 4456777888888887777653 2234566677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHH
Q 044256 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251 (363)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 251 (363)
+...|++++|+..|+...+.. +.+...|..+...+...|++++|...|++.+... +.+...+..+.
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-------------P~~~~~~~~la 440 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-------------PDFIFSHIQLG 440 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------ccCHHHHHHHH
Confidence 777778888888777776653 2345667777777777788888877777766543 12233344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
.++.+.|++++|+..|++..+.. +.++..++.+...+...|++++|.+.|++...
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 55555555555555555554432 33444555555555555555555555555444
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=2.3e-18 Score=164.24 Aligned_cols=326 Identities=12% Similarity=0.045 Sum_probs=243.3
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc---cHH------------HH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT---TCD------------TL 65 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~------------~l 65 (363)
.|++++|+..|+.+++. .|.++.++..+..++.+.|++++|+..|++..+.. |+.. .|. ..
T Consensus 282 ~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHH
Confidence 37899999999999986 77789999999999999999999999999998763 3321 121 22
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------h--
Q 044256 66 ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------L-- 136 (363)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~-- 136 (363)
...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|++..+....... .
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 446678999999999999999864 456778888999999999999999999999876433221 1
Q ss_pred ----------------------------------------hhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 044256 137 ----------------------------------------LCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176 (363)
Q Consensus 137 ----------------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (363)
+...|++++|...+++.++.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 123577777777777777654 234556667777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH----------------------------
Q 044256 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF---------------------------- 228 (363)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------- 228 (363)
++++|+..++++.+.. +.+...+..+...+...++.++|+..++.+.....
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 8888888888776642 22333444444445567777777776665421100
Q ss_pred -HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 229 -KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
......+. ..+.+...+..+...+.+.|++++|+..|+++.+.. |.+...+..++..+...|++++|.+.++.+..
T Consensus 589 ~~eA~~~l~--~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 589 EAEAEALLR--QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 00000111 123455667778888999999999999999999875 66788999999999999999999999998876
Q ss_pred CCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 308 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.. +.+...+..+..++...|++++|.+++++++..
T Consensus 666 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 666 TA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred cC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 53 345667777888899999999999999999875
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=4.2e-19 Score=147.19 Aligned_cols=318 Identities=15% Similarity=0.124 Sum_probs=239.1
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--------------------
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT-------------------- 60 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------------------- 60 (363)
.|++++|+.+++.+.+. .|.....|..+..++...|+.+.|.+.|.+.++. .|+..
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 47889999999999986 7878899999999999999999999998888765 34322
Q ss_pred ---------------cHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 044256 61 ---------------TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN-VFCYGSLIDGLCKDRLVDQTKDLFM 124 (363)
Q Consensus 61 ---------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 124 (363)
.|+.|...+-..|+...|++.|++... +.|+ ...|-.|...|...+.+++|...|.
T Consensus 205 ~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--------ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 205 ACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--------LDPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred HHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--------CCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 223333333344555555555555555 3333 4456666666666667777776666
Q ss_pred HHHHcCCCcch-------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 044256 125 EMKDKGINANT-------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197 (363)
Q Consensus 125 ~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 197 (363)
+.....+.... +|...|..+.|...+++.++.. +--...|+.|..++...|++.+|.+.|....... +...
T Consensus 277 rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ha 354 (966)
T KOG4626|consen 277 RALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHA 354 (966)
T ss_pred HHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccH
Confidence 66543221111 5677888888888888888763 2236788888888888888888888888877762 2245
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCc
Q 044256 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE-TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276 (363)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 276 (363)
.+.+.|...|...|.+++|..+|.....-. |. ...++.|...|-.+|++++|+..|++.+... |
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~--------------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P 419 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVF--------------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-P 419 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhC--------------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-c
Confidence 567778888888888888888887766532 44 4578889999999999999999999998764 4
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH
Q 044256 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350 (363)
Q Consensus 277 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 350 (363)
.-...|+.+...|-..|+.+.|.+.+.+.+..+ +--...++.|...|-..|+..+|+.-|++.++ ++||..
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 446789999999999999999999999998864 33467889999999999999999999999998 677754
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=2.5e-18 Score=163.99 Aligned_cols=317 Identities=12% Similarity=0.021 Sum_probs=233.0
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH-------------
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT------------- 67 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~------------- 67 (363)
.|++++|+..|+++.+. .|.+...+..+..++...|++++|++.|++..+.. +.+...+..+..
T Consensus 364 ~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 364 ANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 37889999999999987 67678889999999999999999999999998763 222333333332
Q ss_pred -----------------------------HHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHH
Q 044256 68 -----------------------------GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ 118 (363)
Q Consensus 68 -----------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 118 (363)
.+...|++++|++.|++..+.. +.+...+..+...|.+.|++++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-------PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHH
Confidence 3345677777777777777743 3456666777777888888888
Q ss_pred HHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHHHcCCCCchh---------hHHHHHHHHHhcCCHHHHH
Q 044256 119 TKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMMQRGLNPVIF---------TYTPLLNGYCLVGKVNVAI 182 (363)
Q Consensus 119 a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~~~~~~a~ 182 (363)
|...++++.+..+.... .+...++.++|...++.+......++.. .+..+...+...|+.++|+
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 88888877764332211 3345677777777777654332222211 1223456677788888888
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 044256 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 262 (363)
.+++. .+++...+..+...+.+.|++++|+..+++++... +.+...+..++..+...|++++
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-------------P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-------------PGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHCCCHHH
Confidence 88762 24466677788888999999999999998887654 3457788899999999999999
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC--Cc---cHHHHHHHHHHHHccCChhHHHHHH
Q 044256 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL--VA---DVVAYNILIHALGKEGQIKKENYLL 337 (363)
Q Consensus 263 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~a~~~~ 337 (363)
|++.++.+.... +.+..++..+..++...|++++|.++++.+..... +| +...+..+...+...|++++|+..|
T Consensus 656 A~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 656 ARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999887654 45566777888899999999999999999987532 22 2345666778889999999999999
Q ss_pred HHHHHc-CCC
Q 044256 338 LSMEEN-GCA 346 (363)
Q Consensus 338 ~~m~~~-g~~ 346 (363)
++.... |+.
T Consensus 735 ~~Al~~~~~~ 744 (1157)
T PRK11447 735 KDAMVASGIT 744 (1157)
T ss_pred HHHHhhcCCC
Confidence 998742 443
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.3e-17 Score=152.52 Aligned_cols=340 Identities=10% Similarity=-0.015 Sum_probs=240.6
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|..+|+.+++. .|.++..+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+.
T Consensus 62 ~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 62 LKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 37889999999999886 77678888999999999999999999999998873 34455 8888889999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHH------------------------------------
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFM------------------------------------ 124 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------------------------------------ 124 (363)
.++++.+.. +.+...+..+..++...+..+.|+..++
T Consensus 138 ~l~~al~~~-------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 138 AMTQALPRA-------PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHH
Confidence 999999864 4455666666666666666665554444
Q ss_pred ----------HHHHc-CCCcch-------------hhhccCChHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCCHH
Q 044256 125 ----------EMKDK-GINANT-------------LLCKKTKLVEANRLLELMMQRGLN-PVIFTYTPLLNGYCLVGKVN 179 (363)
Q Consensus 125 ----------~~~~~-~~~~~~-------------~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~ 179 (363)
.+.+. ...|+. .+...+++++|...|+.+.+.+.+ |+. ....+...|...|+++
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 33322 111111 134567777788888777766421 221 1222456777778888
Q ss_pred HHHHHHHHHHHcCCCC---cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC---hHHHHHHHHH
Q 044256 180 VAIALFDSMARKGFMP---DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE---TFTCNIFIDG 253 (363)
Q Consensus 180 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~ 253 (363)
+|+.+|+.+.+..... .......+..++...|++++|..+++.+....+.... ......-.|+ ...+..+...
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~-~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR-LYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe-ecCCCCCCCCchHHHHHHHHHHH
Confidence 8888887776542111 1234455556677778888887777766543210000 0000001223 2245567778
Q ss_pred HHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHH
Q 044256 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333 (363)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 333 (363)
+...|+.++|++.++++.... |.+...+..+...+...|++++|++.++++.... +.+...+......+.+.|++++|
T Consensus 369 l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 889999999999999998775 7778899999999999999999999999999874 44577788888899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH
Q 044256 334 NYLLLSMEENGCALDVDTFNTLMI 357 (363)
Q Consensus 334 ~~~~~~m~~~g~~p~~~~~~~ll~ 357 (363)
..+++++++ ..|+......+=+
T Consensus 447 ~~~~~~ll~--~~Pd~~~~~~~~~ 468 (765)
T PRK10049 447 DVLTDDVVA--REPQDPGVQRLAR 468 (765)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHH
Confidence 999999998 4666655544433
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.1e-17 Score=148.31 Aligned_cols=294 Identities=10% Similarity=-0.077 Sum_probs=240.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHH
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYG 104 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (363)
..+......+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|+..++..++.. +.+...|.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~ 198 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALN 198 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHH
Confidence 34667788899999999999999999875 6788889999999999999999999999999854 45677899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC----------------------------Ccch---------------------
Q 044256 105 SLIDGLCKDRLVDQTKDLFMEMKDKGI----------------------------NANT--------------------- 135 (363)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------------~~~~--------------------- 135 (363)
.+..++...|++++|+..|......+. .|..
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 999999999999999876544321110 0000
Q ss_pred --------------hh----------hccCChHHHHHHHHHHHHcC-CCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 136 --------------LL----------CKKTKLVEANRLLELMMQRG-LNP-VIFTYTPLLNGYCLVGKVNVAIALFDSMA 189 (363)
Q Consensus 136 --------------~~----------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 189 (363)
.+ ...+.+++|...|+.....+ ..| ....+..+...+...|++++|+..++...
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 11257888999999988764 223 45678888888899999999999999988
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044256 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269 (363)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 269 (363)
+.. +.....|..+...+...|++++|...+++++... +.+...|..+...+...|++++|...|++
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-------------SEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 763 2235678888888999999999999988876653 34567888899999999999999999999
Q ss_pred HHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 270 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
..+.. +.+...+..+..++.+.|++++|...|++..... +.+...|+.+..++...|++++|...|++.++.
T Consensus 425 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 425 SIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 99875 6677888899999999999999999999998763 556888999999999999999999999999874
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=8.7e-17 Score=147.04 Aligned_cols=326 Identities=10% Similarity=-0.001 Sum_probs=241.2
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|+.++|+++|...... .|.+...+..+...+.+.|++++|..+|++.++.. +.+...+..+..++...|++++|+.
T Consensus 28 ~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 28 AGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47899999999999874 55477789999999999999999999999988763 3456677788889999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChH---------
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLV--------- 144 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~--------- 144 (363)
.++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+.... .+...+..+
T Consensus 105 ~l~~~l~~~-------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 105 KAKQLVSGA-------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHhC-------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 999999864 55666 888999999999999999999999987554333 222233333
Q ss_pred -------------------------------------HHHHHHHHHHHc-CCCCchh-hHH----HHHHHHHhcCCHHHH
Q 044256 145 -------------------------------------EANRLLELMMQR-GLNPVIF-TYT----PLLNGYCLVGKVNVA 181 (363)
Q Consensus 145 -------------------------------------~a~~~~~~~~~~-~~~~~~~-~~~----~li~~~~~~~~~~~a 181 (363)
+|+..++.+.+. ...|+.. .+. ..+..+...|++++|
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 344444455432 1122211 111 113345677999999
Q ss_pred HHHHHHHHHcCCC-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCH
Q 044256 182 IALFDSMARKGFM-PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260 (363)
Q Consensus 182 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 260 (363)
+..|+.+.+.+.+ |+. ....+..+|...|++++|...++++..... ............+..++...|++
T Consensus 257 ~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p---------~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE---------TIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC---------CCCCCChHHHHHHHHHHHhcccH
Confidence 9999999887532 322 222256688899999999988887654320 00001123456667778899999
Q ss_pred HHHHHHHHHHHhccC-----------cch---HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHc
Q 044256 261 LEVMELFPTLEISNC-----------ELF---VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326 (363)
Q Consensus 261 ~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 326 (363)
++|.++++.+....- .|+ ...+..+...+...|++++|+++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 999999999886530 122 2355677788899999999999999998774 6678899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHH
Q 044256 327 EGQIKKENYLLLSMEENGCALDVD 350 (363)
Q Consensus 327 ~g~~~~a~~~~~~m~~~g~~p~~~ 350 (363)
.|++++|++.+++.++ +.|+..
T Consensus 406 ~g~~~~A~~~l~~al~--l~Pd~~ 427 (765)
T PRK10049 406 RGWPRAAENELKKAEV--LEPRNI 427 (765)
T ss_pred cCCHHHHHHHHHHHHh--hCCCCh
Confidence 9999999999999998 457753
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=1.7e-17 Score=137.80 Aligned_cols=295 Identities=15% Similarity=0.135 Sum_probs=178.9
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|.-.++|..+.+.+...|++++|+..|+.+++.. +.....|..+..++...|+.+.|.+.|.+.++. .|+
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--------nP~ 182 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--------NPD 182 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--------Ccc
Confidence 44467889999999999999999999999999874 335778999999999999999999999988874 454
Q ss_pred hhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 044256 100 VFCYG-SLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171 (363)
Q Consensus 100 ~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (363)
..... .+....-..|++++|...|.+.++....... ++...|+...|.+.|++..+.+ +.-...|-.|...
T Consensus 183 l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV 261 (966)
T KOG4626|consen 183 LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNV 261 (966)
T ss_pred hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHH
Confidence 33332 2333344456666666666666554322111 4445566666666666555543 1113344444444
Q ss_pred HHh----------------------------------cCCHHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcCChhHH
Q 044256 172 YCL----------------------------------VGKVNVAIALFDSMARKGFMPD-VFSYSVLINGYCKNFNVEEA 216 (363)
Q Consensus 172 ~~~----------------------------------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 216 (363)
|.. .|..|.|+..|++..+. .|+ ...|+.|..++...|++.+|
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea 339 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEA 339 (966)
T ss_pred HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHH
Confidence 444 45555555555554443 222 34555555555556666666
Q ss_pred HHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChH
Q 044256 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296 (363)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 296 (363)
.+.+.+.+... +......+.|..++...|.+++|..+|....+.. +--....+.|...|-++|+++
T Consensus 340 ~~cYnkaL~l~-------------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 340 VDCYNKALRLC-------------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHHHHHHhC-------------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHH
Confidence 55555554432 1223455556666666666666666666655442 223445566666666666666
Q ss_pred HHHHHHHHhhhCCCCcc-HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 297 IASELFNKLSCKNLVAD-VVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 297 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
+|...+++..+. .|+ ...|+.+...|-..|+.+.|.+.+.+.+.
T Consensus 406 ~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 406 DAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 666666666554 233 45566666666666666666666666665
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=2.9e-16 Score=141.51 Aligned_cols=337 Identities=12% Similarity=0.020 Sum_probs=220.1
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|++++|+++|+.+.+. .|.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.
T Consensus 116 gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 5667777777777765 6656666666666677777777777777776655 44444443333333334455457777
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHH------------------------------------
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME------------------------------------ 125 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~------------------------------------ 125 (363)
++++.+.. +.+...+..++.+..+.|-...|.++..+
T Consensus 192 ~ekll~~~-------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 192 SSEAVRLA-------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHhC-------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 77777653 33455555555555555444444433332
Q ss_pred ------------HHHc-CCCcch-------------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 044256 126 ------------MKDK-GINANT-------------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179 (363)
Q Consensus 126 ------------~~~~-~~~~~~-------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 179 (363)
+... +..|.. ++...+++.++.+.++.+...+.+....+-..+.++|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 1110 000110 45566777777777777777765544556677778888888888
Q ss_pred HHHHHHHHHHHcC-----CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhc--CCCCCh-HHHHHHH
Q 044256 180 VAIALFDSMARKG-----FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC--NVVPET-FTCNIFI 251 (363)
Q Consensus 180 ~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~ll 251 (363)
+|+.+|+.+.... .+++......|.-+|...+++++|..+++++....+. ........ ...||- ..+..++
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~-~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY-QVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-EEeccCCCCCCCCccHHHHHHHHH
Confidence 8888888776542 1223333566777788888888888777776553210 00000001 112222 2344567
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChh
Q 044256 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331 (363)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 331 (363)
..+...|+..+|++.++++.... |-|......+...+...|.+.+|.+.++...... +-+..+......++...|+++
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHH
Confidence 77889999999999999998776 8899999999999999999999999998877763 556778888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH
Q 044256 332 KENYLLLSMEENGCALDVDTFNT 354 (363)
Q Consensus 332 ~a~~~~~~m~~~g~~p~~~~~~~ 354 (363)
+|..+.+.+.+ ..|+......
T Consensus 502 ~A~~~~~~l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 502 QMELLTDDVIS--RSPEDIPSQE 522 (822)
T ss_pred HHHHHHHHHHh--hCCCchhHHH
Confidence 99999999987 3555544433
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=3.6e-15 Score=126.24 Aligned_cols=289 Identities=9% Similarity=-0.022 Sum_probs=196.1
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH--HHHHHHHhcCChhHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVT-FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD--TLITGLRRTGNMNLT 78 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 78 (363)
||++.|.+.+....+. .+ ++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 98 Gd~~~A~k~l~~~~~~--~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 98 GDYQQVEKLMTRNADH--AE-QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCHHHHHHHHHHHHhc--cc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 6677777666665543 11 2222 322234446677777777777777654 44443222 224566667777777
Q ss_pred HHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCC
Q 044256 79 LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL 158 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (363)
...++.+.+.. +.+......+...|.+.|++++|.+++..+.+....+.. +.. ..
T Consensus 173 l~~l~~~~~~~-------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~---------~~~----~l----- 227 (398)
T PRK10747 173 RHGVDKLLEVA-------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE---------HRA----ML----- 227 (398)
T ss_pred HHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH---------HHH----HH-----
Confidence 77777776653 445666666777777777777777777777665332110 000 00
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhc
Q 044256 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238 (363)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (363)
...+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|..++++..+.
T Consensus 228 --~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------------ 292 (398)
T PRK10747 228 --EQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR------------ 292 (398)
T ss_pred --HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------
Confidence 0013334444444455667777777776543 3457778888999999999999999888776653
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHH
Q 044256 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318 (363)
Q Consensus 239 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (363)
.|+.... ++.+....++++++.+..+...+.. |-|+..+..+...|.+.+++++|.+.|+...+. .|+...+.
T Consensus 293 --~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~ 365 (398)
T PRK10747 293 --QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYA 365 (398)
T ss_pred --CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH
Confidence 2555322 3444456699999999999988775 777888999999999999999999999999986 68999999
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH
Q 044256 319 ILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 319 ~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.+..++.+.|+.++|.+++++-..
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999998765
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=3.1e-18 Score=138.64 Aligned_cols=261 Identities=16% Similarity=0.090 Sum_probs=113.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHH
Q 044256 29 SLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107 (363)
Q Consensus 29 ~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 107 (363)
.+...+.+.|++++|++++++..... .+.|...|..+...+...++++.|...++++...+ +-+...+..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-------~~~~~~~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-------KANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccccccccccc
Confidence 56778888999999999996654443 13344555666667778889999999999998865 33566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044256 108 DGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS 187 (363)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 187 (363)
.. ...+++++|.+++++..+. .++...+..++..+.+.++++.+..+++.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~-----------------------------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYER-----------------------------DGDPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred cc-ccccccccccccccccccc-----------------------------ccccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 77 6888888888887765543 23455677788889999999999999998
Q ss_pred HHHcC-CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 044256 188 MARKG-FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ETFTCNIFIDGLCKNGHVLEVME 265 (363)
Q Consensus 188 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~ 265 (363)
+.... .+++...|..+...+.+.|+.++|...+++.++.. | +......++..+...|+.+++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------------P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--------------PDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------------TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 77542 34577788888899999999999999999988875 5 46778888999999999999999
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
+++...+.. +.|+..+..+..+|...|+.++|...|++..... +.|+.....+..++...|+.++|.++.++...
T Consensus 202 ~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 202 ALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 998887765 6677788999999999999999999999998864 55888888999999999999999999887654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=1.4e-14 Score=133.41 Aligned_cols=320 Identities=12% Similarity=0.010 Sum_probs=242.0
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-C-CCCCcccHHHHHHHHHhcCC---hh
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF-G-CRPNVTTCDTLITGLRRTGN---MN 76 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~-~~~~~~~~~~l~~~~~~~~~---~~ 76 (363)
+...+|.+.+..+.+. .|.+......+.-...+.|+.++|.++|+..... + -.++.....-++..|.+.+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 4566777778888875 5667777777878888999999999999998763 1 12233334466777766654 22
Q ss_pred HHHHH----------------------HHHHHhccCCCCCccCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044256 77 LTLKL----------------------HQEMVNGMGDFGGIYKP--NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132 (363)
Q Consensus 77 ~a~~~----------------------~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 132 (363)
++..+ ++.....-. ..++ +...|..+..++.. ++.++|...+.+.....+.
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd 508 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG----DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD 508 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc----cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc
Confidence 22222 222222110 0144 67788888888877 8899999988888766433
Q ss_pred cch------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 044256 133 ANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206 (363)
Q Consensus 133 ~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 206 (363)
... .+...|++++|...++++... +|+...+..+...+.+.|+.+.|...++...+.. +++...+..+...
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 211 335799999999999998665 4455556777888899999999999999998874 2233333344444
Q ss_pred HHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHH
Q 044256 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286 (363)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 286 (363)
..+.|++++|...+++.++.. |+...+..+..++.+.|++++|+..+++..... |.+...+..+.
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l~--------------P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG 650 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNIA--------------PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALG 650 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 556699999999998887654 778889999999999999999999999999886 77788999999
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 044256 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349 (363)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 349 (363)
.++...|++++|...+++..+.. +-+...+..+..++...|++++|...|++..+ +.|+.
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 99999999999999999999874 45788999999999999999999999999998 45654
No 25
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=6.9e-15 Score=125.20 Aligned_cols=287 Identities=9% Similarity=-0.046 Sum_probs=176.1
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCChhHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT--TCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~ 79 (363)
|+++.|.+.+....+. .|.....+-....++.+.|+++.|.+.+++..+. .|+.. ........+...|+++.|.
T Consensus 98 g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 98 GDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 5666666666665554 3312233334445555666666666666665543 23332 2222355555666666666
Q ss_pred HHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCC
Q 044256 80 KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLN 159 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (363)
..++.+.+.. |.+..++..+...+.+.|+++.|.+.++.+.+.+..
T Consensus 174 ~~l~~l~~~~-------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~--------------------------- 219 (409)
T TIGR00540 174 HGVDKLLEMA-------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF--------------------------- 219 (409)
T ss_pred HHHHHHHHhC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC---------------------------
Confidence 6666666643 334555666666666666666666666666654322
Q ss_pred CchhhHH-HHHH---HHHhcCCHHHHHHHHHHHHHcC---CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHH
Q 044256 160 PVIFTYT-PLLN---GYCLVGKVNVAIALFDSMARKG---FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232 (363)
Q Consensus 160 ~~~~~~~-~li~---~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 232 (363)
+. ..+. .-.. .....+..+.....+..+.+.. .+.+...+..+...+...|+.++|.+++++..+..
T Consensus 220 ~~-~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----- 293 (409)
T TIGR00540 220 DD-EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----- 293 (409)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----
Confidence 11 1111 1111 1122222232333444444331 12377788888889999999999998888877654
Q ss_pred HHhHhcCCCCChHHH---HHHHHHHHhcCCHHHHHHHHHHHHhccCcchH--HHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 233 NEMKLCNVVPETFTC---NIFIDGLCKNGHVLEVMELFPTLEISNCELFV--EIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 233 ~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
|+.... ..........++.+.+.+.++...+.. +-|+ ....++...+.+.|++++|.+.|+....
T Consensus 294 ---------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 294 ---------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred ---------CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 554321 112222334577888888888877663 5555 6777889999999999999999996444
Q ss_pred CCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 308 KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 308 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
....|+...+..+...+.+.|+.++|.+++++...
T Consensus 364 ~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 364 CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44478888888999999999999999999998654
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=1.2e-17 Score=135.29 Aligned_cols=256 Identities=13% Similarity=0.029 Sum_probs=112.7
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|+++++........|.++..|..+.......++++.|...++++...+ +-+...+..++.. ...+++++|.+
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccccccccc
Confidence 478999999997665553246577788888888889999999999999999875 2356667777777 78999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCC
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNP 160 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (363)
+++...+. .++...+..++..+.+.++++++.++++.+.... ..+.
T Consensus 99 ~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~ 144 (280)
T PF13429_consen 99 LAEKAYER--------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP--------------------------AAPD 144 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------------------------T
T ss_pred cccccccc--------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc--------------------------CCCC
Confidence 99887663 4567778888999999999999999999977531 1245
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCC
Q 044256 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240 (363)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 240 (363)
+...|..+...+.+.|+.++|++.+++..+.. +.|......++..+...|+.+++..+++...+..
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------------- 210 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA------------- 210 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-------------
Confidence 67788889999999999999999999998873 2257788889999999999999887777665542
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 241 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
+.++..+..+..++...|+.++|+..|++..+.. +.|+.+...+..++...|+.++|.++.+++..
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 3566788899999999999999999999998875 77899999999999999999999999887654
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=3.4e-14 Score=123.15 Aligned_cols=318 Identities=14% Similarity=0.060 Sum_probs=245.1
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|..++.++.+. .|.++..|.+|..+|-..|+.+++...+-.....+ +.|...|..+.....+.|++++|.-
T Consensus 152 rg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 48999999999999997 78789999999999999999999999885554433 4566789999999999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch------------hhhccCChHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------------LLCKKTKLVEANR 148 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~~~~a~~ 148 (363)
+|.+.++.. +++...+-.-+..|-+.|+...|...|.++....+..+- .+...++-+.|.+
T Consensus 229 cy~rAI~~~-------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 229 CYSRAIQAN-------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHhcC-------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999975 667666667788899999999999999999987552222 4455666688888
Q ss_pred HHHHHHHcC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHH--------------------------H
Q 044256 149 LLELMMQRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY--------------------------S 201 (363)
Q Consensus 149 ~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------------------~ 201 (363)
.++.....+ -..+...++.++..+.+...++.+......+......+|..-| .
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 888877632 2345667889999999999999999888877662222222111 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchH
Q 044256 202 VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN--VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279 (363)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 279 (363)
.++-++......+.... +...+.... +.-+...|.-+..++...|++.+|+.+|..+......-+.
T Consensus 382 rl~icL~~L~~~e~~e~------------ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEA------------LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred hHhhhhhcccccchHHH------------HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 12222333333333322 222333333 2335667888999999999999999999999987656667
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 044256 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341 (363)
Q Consensus 280 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 341 (363)
..|--+..+|...|..++|.+.|+.+.... +.+...-.+|...+.+.|++++|.+.+..+.
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 899999999999999999999999999874 4456666777788899999999999999865
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.9e-14 Score=113.80 Aligned_cols=331 Identities=15% Similarity=0.189 Sum_probs=242.4
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH--hcCChh-HHHHHHHHHHhccCCCCCc-
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR--RTGNMN-LTLKLHQEMVNGMGDFGGI- 95 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~--~~~~~~-~a~~~~~~~~~~~~~~~~~- 95 (363)
.|..+.+=|.|+. +...|..+++.-+|+.|.+.|+..+...-..|++.-+ ...+.- .-++.|-.|.+.+.+..+.
T Consensus 112 ~~~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW 190 (625)
T KOG4422|consen 112 DPLQVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW 190 (625)
T ss_pred CchhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc
Confidence 4545667777777 4667889999999999999987777766555554433 222221 1223333344333322111
Q ss_pred ------------cCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch----hhhccCChHHHHHHHHHHHHcCCC
Q 044256 96 ------------YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT----LLCKKTKLVEANRLLELMMQRGLN 159 (363)
Q Consensus 96 ------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~ 159 (363)
.+.+..++..+|.+.++--..+.|.+++++-......... .+.....+....+++.+|.+..+.
T Consensus 191 K~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 191 KSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMT 270 (625)
T ss_pred ccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcC
Confidence 4667889999999999999999999999998876554443 334444555568899999999999
Q ss_pred CchhhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHH-HHHHHHHHHhhHHHHHHH
Q 044256 160 PVIFTYTPLLNGYCLVGKVNV----AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA-MNVSREMILNGFKKIFNE 234 (363)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~ 234 (363)
||..|+|+++.+..+.|+++. |.+++.+|.+-|+.|+..+|..+|..+++-++..+. ..++. ++.+.
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~--------dI~N~ 342 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN--------DIQNS 342 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH--------HHHHh
Confidence 999999999999999998775 566788999999999999999999999998887663 22222 33444
Q ss_pred hHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----Ccch---HHHHHHHHHHHHhcCChHHHHHHHH
Q 044256 235 MKLCNVVP----ETFTCNIFIDGLCKNGHVLEVMELFPTLEISN----CELF---VEIFNSLIRGCCKFGIFEIASELFN 303 (363)
Q Consensus 235 ~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~ 303 (363)
+..+..+| |...|...++.|.+..+.+-|.++..-+.... ++|+ ..-|..+....++....+.-...|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333 45567778899999999999988877665331 2333 2346778888888899999999999
Q ss_pred HhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044256 304 KLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359 (363)
Q Consensus 304 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 359 (363)
.|.-.-.-|+..+...++++....|.++-.-+++..+...|..-+...-..++.-+
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 99877677899999999999999999999999999999887554444444444333
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=9.4e-14 Score=110.99 Aligned_cols=329 Identities=14% Similarity=0.143 Sum_probs=193.5
Q ss_pred hhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhH----HHH
Q 044256 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL----TLK 80 (363)
Q Consensus 5 ~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~ 80 (363)
+.|..++.+.......- +..+||.+|.+-.-.. -.++..+|.+..+.||..|||+++++..+.|+++. |.+
T Consensus 224 ERA~~L~kE~~~~k~kv-~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalq 298 (625)
T KOG4422|consen 224 ERARELYKEHRAAKGKV-YREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQ 298 (625)
T ss_pred HHHHHHHHHHHHhhhee-eHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHH
Confidence 44555555444443333 4555555554432211 14455556666666677777777776666665543 345
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCc---ch---------hhhccCCh
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQ-TKDLFMEMKD----KGINA---NT---------LLCKKTKL 143 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~---~~---------~~~~~~~~ 143 (363)
++.+|++.| +.|...+|..+|..+.+.++..+ |..++.++.. ..+.| +. ++....+.
T Consensus 299 il~EmKeiG------VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~ 372 (625)
T KOG4422|consen 299 ILGEMKEIG------VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDL 372 (625)
T ss_pred HHHHHHHhC------CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhH
Confidence 566666666 66666677766666666665532 3333333322 11222 11 33455555
Q ss_pred HHHHHHHHHHHHcC----CCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHH
Q 044256 144 VEANRLLELMMQRG----LNPV---IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEA 216 (363)
Q Consensus 144 ~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 216 (363)
+.|.++..-+.... +.|+ ..-|..+....++....+....+|+.|.-+-.-|+..+...++++....++++-.
T Consensus 373 ~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~i 452 (625)
T KOG4422|consen 373 ELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVI 452 (625)
T ss_pred HHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhH
Confidence 55655554443221 2233 2334556666777777788888888888777778888888899988888999888
Q ss_pred HHHHHHHHHhhH-------HHHHHHhHhcCCCCChHHHHHHHHHHHhc-CCHHHH-HHHHHHHHhccCcchHHHHHHHHH
Q 044256 217 MNVSREMILNGF-------KKIFNEMKLCNVVPETFTCNIFIDGLCKN-GHVLEV-MELFPTLEISNCELFVEIFNSLIR 287 (363)
Q Consensus 217 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~ 287 (363)
-+++..+...|. +.++..|......|+...-..+-...++. -++.++ ...-.++.+...+ ....+.++.
T Consensus 453 pRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~ 530 (625)
T KOG4422|consen 453 PRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAI 530 (625)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHH
Confidence 888888876663 44555555555445433222222222211 122222 2223344444433 456677777
Q ss_pred HHHhcCChHHHHHHHHHhhhCC-CCccHHHHH---HHHHHHHccCChhHHHHHHHHHHHcCCC
Q 044256 288 GCCKFGIFEIASELFNKLSCKN-LVADVVAYN---ILIHALGKEGQIKKENYLLLSMEENGCA 346 (363)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~ 346 (363)
.+.+.|..++|.+++..+.+.+ --|-....| -++....+.+++..|..+++-|...+..
T Consensus 531 Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 531 LLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 8899999999999999996543 233333444 5666777889999999999999776543
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=3.9e-14 Score=108.96 Aligned_cols=290 Identities=12% Similarity=0.044 Sum_probs=175.5
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc------cHHHHHHHHHhcCCh
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT------TCDTLITGLRRTGNM 75 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~l~~~~~~~~~~ 75 (363)
++.++|.++|-.|.+. .|.+.++--+|.+.|.+.|..++|+++.+.+..+ ||.. ....|..-|...|-+
T Consensus 49 ~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 49 NQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred cCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 4556677777777664 5545666666777777777777777777766653 4421 223345556666777
Q ss_pred hHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHH
Q 044256 76 NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ 155 (363)
Q Consensus 76 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 155 (363)
+.|..+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+..
T Consensus 124 DRAE~~f~~L~de~-------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~-------------------- 176 (389)
T COG2956 124 DRAEDIFNQLVDEG-------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR-------------------- 176 (389)
T ss_pred hHHHHHHHHHhcch-------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch--------------------
Confidence 77777777666543 223445666667777777777777776666655433322
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHh
Q 044256 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235 (363)
Q Consensus 156 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (363)
..-...|.-+...+....+++.|..++.+..+.+. ..+..-..+.+.....|+++.|++.++.+.+.+.
T Consensus 177 ---~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~------- 245 (389)
T COG2956 177 ---VEIAQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNP------- 245 (389)
T ss_pred ---hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhCh-------
Confidence 00023445555556667777888888777766521 1233333445566777888888888888776651
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHH
Q 044256 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315 (363)
Q Consensus 236 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (363)
.--+.+...|..+|...|++++....+..+.+.. +....-..+-..-....-.+.|...+.+-... .|+..
T Consensus 246 -----~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~ 316 (389)
T COG2956 246 -----EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMR 316 (389)
T ss_pred -----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHH
Confidence 1123456667777888888888888777777653 23333344444444445556666655555544 57777
Q ss_pred HHHHHHHHHHc---cCChhHHHHHHHHHHHc
Q 044256 316 AYNILIHALGK---EGQIKKENYLLLSMEEN 343 (363)
Q Consensus 316 ~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 343 (363)
.+..++..-.. .|...+-+..++.|...
T Consensus 317 gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 317 GFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 77777775443 34566666677777644
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=5e-14 Score=129.85 Aligned_cols=266 Identities=9% Similarity=-0.040 Sum_probs=164.2
Q ss_pred CCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccC
Q 044256 20 RPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97 (363)
Q Consensus 20 ~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 97 (363)
.|. ++..|..+..++.. +++++|+..|.+.... .|+......+...+...|++++|...|+++.. .+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~--------~~ 539 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISL--------HD 539 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc--------cC
Confidence 455 67778888887776 7888888877777765 46544333344455678888888888888765 34
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 044256 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177 (363)
Q Consensus 98 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (363)
|+...+..+..++.+.|++++|...+++..+..+. +...+..+.......|+
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~----------------------------~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG----------------------------DNALYWWLHAQRYIPGQ 591 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc----------------------------cHHHHHHHHHHHHhCCC
Confidence 44555666677778888888888888887764311 11222222333334467
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhc
Q 044256 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257 (363)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 257 (363)
+++|...+++..+. .|+...+..+..++.+.|++++|...+++..... +.+...++.+..++...
T Consensus 592 ~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-------------Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 592 PELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-------------PNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHC
Confidence 77777776666654 3455566666666666777777766666665543 22344555555566666
Q ss_pred CCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCcc-HHHHHHHHHHHHccCChhHHHHH
Q 044256 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD-VVAYNILIHALGKEGQIKKENYL 336 (363)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~ 336 (363)
|++++|+..+++..+.. |-+...+..+..++...|++++|...+++..... |+ ..+.-.......+..+++.|.+-
T Consensus 657 G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 657 GDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 67777777766666554 4455666666666667777777777776666542 32 23333334444455555555555
Q ss_pred HHHHHH
Q 044256 337 LLSMEE 342 (363)
Q Consensus 337 ~~~m~~ 342 (363)
+.+-..
T Consensus 734 ~~r~~~ 739 (987)
T PRK09782 734 VGRRWT 739 (987)
T ss_pred HHHHhh
Confidence 555443
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=2.5e-13 Score=122.76 Aligned_cols=175 Identities=10% Similarity=0.010 Sum_probs=133.0
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CcccHHHH--HHHHHhcCChhH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRP-NVTTCDTL--ITGLRRTGNMNL 77 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l--~~~~~~~~~~~~ 77 (363)
.|+++.|++.|+.+.+. .|.++.....++..+...|+.++|+..+++.. .| +...+..+ ...+...|++++
T Consensus 47 ~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 47 AGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred CCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 48889999999999886 77443233388888888899999999999988 33 33333334 557888899999
Q ss_pred HHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch------hhhccCChHHHHHHHH
Q 044256 78 TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLE 151 (363)
Q Consensus 78 a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~ 151 (363)
|+++|+++.+.. +.+...+..++..+...++.++|++.++++......... .+...++..+|++.++
T Consensus 121 Aiely~kaL~~d-------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 121 ALALWQSSLKKD-------PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred HHHHHHHHHhhC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999865 555777778888899999999999999998876544222 2333566666999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189 (363)
Q Consensus 152 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 189 (363)
++.+.. +.+...+..+..++.+.|-...|.++..+-.
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 998875 4457777888888999999998888777643
No 33
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=5.2e-13 Score=105.87 Aligned_cols=299 Identities=10% Similarity=-0.015 Sum_probs=220.9
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|+|.+|+++..+..+.+..| ...|..-.++.-+.|+.+.+-.++.+..+.--.++....-+..+.....|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 488888999888888876665 566777777788888999999988888775223444455666677788888888988
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCC
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNP 160 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (363)
-++++.+.. +.++.+.....++|.+.|++.....++.++.+.+.-.+. ++ ..+
T Consensus 175 ~v~~ll~~~-------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~---------e~----~~l------- 227 (400)
T COG3071 175 NVDQLLEMT-------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE---------EA----ARL------- 227 (400)
T ss_pred HHHHHHHhC-------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH---------HH----HHH-------
Confidence 888888765 666788888889999999999999999998887665442 00 011
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCC
Q 044256 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240 (363)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 240 (363)
...+|..+++-....+..+.-...++..... .+.++..-..++.-+.++|+.++|.++.++..+.+
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------------- 293 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ------------- 293 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-------------
Confidence 1246777777777777777766777766544 34456667777788889999999987777766554
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHH
Q 044256 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320 (363)
Q Consensus 241 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (363)
.|.. .. ..-.+.+-++...-++..++-.+.. +.++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+
T Consensus 294 -~D~~-L~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~l 367 (400)
T COG3071 294 -WDPR-LC-RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAEL 367 (400)
T ss_pred -cChh-HH-HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHH
Confidence 3433 21 2233556777777777777766553 556688889999999999999999999977775 6899999999
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCC
Q 044256 321 IHALGKEGQIKKENYLLLSMEENGCALD 348 (363)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~m~~~g~~p~ 348 (363)
..++.+.|+..+|.++.++.+..-.+|+
T Consensus 368 a~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 368 ADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999888775444444
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.2e-13 Score=120.68 Aligned_cols=351 Identities=10% Similarity=0.037 Sum_probs=206.8
Q ss_pred hhhhhHHHHHHHHHHcCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCChhHH
Q 044256 2 SKVLGALMAFGSFIRRCY-RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT--TCDTLITGLRRTGNMNLT 78 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a 78 (363)
|+++.++.+...+..... .+.-+..|..+.++|-..|++++|...|.+..+. .|+.. .+.-|.+.+.+.|+.+.+
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHH
Confidence 455666666655554321 1112344666666666666666666666555544 33332 233455666666666666
Q ss_pred HHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCcch------hhhccCChHHHHH
Q 044256 79 LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR----LVDQTKDLFMEMKDKGINANT------LLCKKTKLVEANR 148 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~ 148 (363)
...|+.+.... +.+..+...|...|+..+ ..+.|..++.+..+..+.... -+...++.-.++.
T Consensus 362 ~~~fEkv~k~~-------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~ 434 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLD 434 (1018)
T ss_pred HHHHHHHHHhC-------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHH
Confidence 66666666542 444555555555555543 334444444444443211111 1223334333444
Q ss_pred HHHHHH----HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCcH------hHHHHHHHHHHhcCChhH
Q 044256 149 LLELMM----QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK---GFMPDV------FSYSVLINGYCKNFNVEE 215 (363)
Q Consensus 149 ~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~ 215 (363)
++..+. ..+.++.....|.+.......|+++.|...|+..... ...+|. .+--.+...+-..++.+.
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~ 514 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEV 514 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhH
Confidence 444332 3344455667777777777777777777777766543 111222 111122233333445555
Q ss_pred HHHHHHHHHHhhH---------------------------------------HHHHH-----------------Hh-Hhc
Q 044256 216 AMNVSREMILNGF---------------------------------------KKIFN-----------------EM-KLC 238 (363)
Q Consensus 216 a~~~~~~~~~~~~---------------------------------------~~~~~-----------------~~-~~~ 238 (363)
|...+..+++..+ ..++. .. .+.
T Consensus 515 A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 515 AEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 5555555544333 11111 11 111
Q ss_pred CCCCChHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 044256 239 NVVPETFTCNIFIDGLCK------------NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306 (363)
Q Consensus 239 ~~~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 306 (363)
...+|+.+..+|...|.. .+..++|+++|.++.+.. |.|...-+-+...++..|++..|..+|.+++
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVr 673 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVR 673 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHH
Confidence 122455555555554432 234678999999998876 7788888999999999999999999999999
Q ss_pred hCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhcC
Q 044256 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN-GCALDVDTFNTLMISFLQKE 363 (363)
Q Consensus 307 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~ 363 (363)
+.. ..+..+|..+..+|...|+|-.|+++|+...+. ...-+......|-+++.+.|
T Consensus 674 Ea~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 674 EAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred HHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 874 236778999999999999999999999998876 44567778888888877653
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1.4e-14 Score=116.61 Aligned_cols=341 Identities=12% Similarity=0.067 Sum_probs=228.7
Q ss_pred hhHHHHHHHHHHcCCCCCchhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------ccHHHHHHHHHhcCChhH
Q 044256 5 LGALMAFGSFIRRCYRPLNDVT-FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV------TTCDTLITGLRRTGNMNL 77 (363)
Q Consensus 5 ~~A~~~~~~~~~~~~~p~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~~~~~~~~ 77 (363)
.+|+..++-+.+....| +... -..+...+.+..++.+|+.+|+..+.. .|++ ...+.+.-.+.+.|+++.
T Consensus 218 ~ealntyeiivknkmf~-nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFP-NAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHhhhhhhhhcccccC-CCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchh
Confidence 45566666666655556 4333 233455666777778888877766654 3332 233444455667788888
Q ss_pred HHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch----------------------
Q 044256 78 TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---------------------- 135 (363)
Q Consensus 78 a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------------- 135 (363)
|+..|+...+ ..|+..+--.|+-++...|+-++..+.|.+|+.....++.
T Consensus 295 ainsfdh~m~--------~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 295 AINSFDHCME--------EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred hHhhHHHHHH--------hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 8888887777 3567666555666666777888888888887765443332
Q ss_pred -------------------------------------------------------------hhhccCChHHHHHHHHHHH
Q 044256 136 -------------------------------------------------------------LLCKKTKLVEANRLLELMM 154 (363)
Q Consensus 136 -------------------------------------------------------------~~~~~~~~~~a~~~~~~~~ 154 (363)
.+.+.|+++.|.++++-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 4567899999998887665
Q ss_pred HcCCCCch---------------------hhH----------HHH-----HHHHHhcCCHHHHHHHHHHHHHcCCCCcHh
Q 044256 155 QRGLNPVI---------------------FTY----------TPL-----LNGYCLVGKVNVAIALFDSMARKGFMPDVF 198 (363)
Q Consensus 155 ~~~~~~~~---------------------~~~----------~~l-----i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 198 (363)
+.+-..-. ..| |.- .+.....|++++|...|++.......-...
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 54321111 111 110 011124799999999999988763222222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHh---hH-----------------HHHHHHhHhcCC-CCChHHHHHHHHHHHhc
Q 044256 199 SYSVLINGYCKNFNVEEAMNVSREMILN---GF-----------------KKIFNEMKLCNV-VPETFTCNIFIDGLCKN 257 (363)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-----------------~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~ 257 (363)
.|+.= -.+-..|+.++|++.|-++... .. ..+-..|....+ +.|+...+-|...|-+.
T Consensus 527 lfnig-lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 527 LFNIG-LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE 605 (840)
T ss_pred HHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc
Confidence 33332 2466789999999988765321 11 233333444444 44677888888999999
Q ss_pred CCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHH-HHccCChhHHHHH
Q 044256 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA-LGKEGQIKKENYL 336 (363)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~ 336 (363)
|+..+|++.+-.--+. +|.+..+...|...|....-++++..+|++..-. .|+..-|..++.. +.+.|++++|+.+
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999998876554433 5778888888988899888899999999987654 7999999998864 5578999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 337 LLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 337 ~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
|+....+ ++-|...+..|++.+..
T Consensus 683 yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhcc
Confidence 9998875 77778888877776643
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.1e-14 Score=119.60 Aligned_cols=280 Identities=11% Similarity=0.029 Sum_probs=191.9
Q ss_pred hhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHhcCChhHHHH-
Q 044256 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGLRRTGNMNLTLK- 80 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~- 80 (363)
..+|...|...... .+.+......+..+|...+++++|..+|+.+.+.. ..-+.++|.+.+--+-+ +-++.
T Consensus 335 ~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 45666666664444 33244555666677777777777777777766541 01134455554433211 11122
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCC
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNP 160 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (363)
+-+.++... +..+.+|-++..+|+-.++.+.|++.|++..+. .|
T Consensus 409 Laq~Li~~~-------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-----------------------------dp 452 (638)
T KOG1126|consen 409 LAQDLIDTD-------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-----------------------------DP 452 (638)
T ss_pred HHHHHHhhC-------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----------------------------CC
Confidence 222233322 444667777777777777777777777666653 33
Q ss_pred -chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH---HHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhH
Q 044256 161 -VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV---LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236 (363)
Q Consensus 161 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (363)
...+|+.+..-+.....+|.|...|+..+.. |+..|++ +...|.+.++++.|.-.|+++....
T Consensus 453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--------- 519 (638)
T KOG1126|consen 453 RFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--------- 519 (638)
T ss_pred ccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC---------
Confidence 5788888888888888999999999887654 5555655 5567889999999988888877654
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHH
Q 044256 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316 (363)
Q Consensus 237 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 316 (363)
+.+.+....+...+.+.|+.++|+++++++.... +.|+..--.-+..+...+++++|+..++++.+. ++.+...
T Consensus 520 ----P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v 593 (638)
T KOG1126|consen 520 ----PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSV 593 (638)
T ss_pred ----ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHH
Confidence 2355666677788888999999999999998776 555555555667777889999999999999886 3445667
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcC
Q 044256 317 YNILIHALGKEGQIKKENYLLLSMEENG 344 (363)
Q Consensus 317 ~~~li~~~~~~g~~~~a~~~~~~m~~~g 344 (363)
|..+...|.+.|+.+.|+.-|--+.+..
T Consensus 594 ~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 594 FALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 7777789999999999999888888743
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=9.3e-13 Score=111.67 Aligned_cols=269 Identities=9% Similarity=-0.017 Sum_probs=179.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHH--HHHHHHHhc
Q 044256 37 EGNIRDASQLVKKMATFGCRPNVTT-CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYG--SLIDGLCKD 113 (363)
Q Consensus 37 ~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~ 113 (363)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+ ..|+..... .....+...
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--------~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE--------LADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCcchHHHHHHHHHHHHHC
Confidence 466666665555544321 11122 22223333566666666666666655 234433222 224455566
Q ss_pred CCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044256 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193 (363)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 193 (363)
|+++.|...++++.+. . |-+...+..+...|.+.|+++.|..++..+.+.+.
T Consensus 167 g~~~~Al~~l~~~~~~---------------------------~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 167 NENHAARHGVDKLLEV---------------------------A-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred CCHHHHHHHHHHHHhc---------------------------C-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 6666666666666543 2 33567888899999999999999999999998865
Q ss_pred CCcHh-------HHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 044256 194 MPDVF-------SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMEL 266 (363)
Q Consensus 194 ~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 266 (363)
.++.. +|..++.......+.+...++++.+... .+.++.....+...+...|+.++|.++
T Consensus 219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-------------~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-------------TRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-------------HhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 43221 2233333333334444444444443222 135677888899999999999999999
Q ss_pred HHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 044256 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346 (363)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 346 (363)
+++..+. ++++... ++.+....++.+++.+..+...+.. +-|+..+..+...+.+.|++++|.+.|+...+ ..
T Consensus 286 L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~ 358 (398)
T PRK10747 286 ILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QR 358 (398)
T ss_pred HHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 9999874 5555322 3344446699999999999998774 55777888999999999999999999999998 68
Q ss_pred CCHHHHHHHHHHHhhcC
Q 044256 347 LDVDTFNTLMISFLQKE 363 (363)
Q Consensus 347 p~~~~~~~ll~~~~~~~ 363 (363)
|+..++..+-..+.+.|
T Consensus 359 P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 359 PDAYDYAWLADALDRLH 375 (398)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999888888777654
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=4.7e-12 Score=102.73 Aligned_cols=317 Identities=12% Similarity=0.106 Sum_probs=204.2
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|++..|.++|++..+- .| +..+|++.|+.-.+.+.++.|..+|++..-. .|++.+|.-....--+.|+...+.++
T Consensus 155 gNi~gaRqiferW~~w--~P-~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EP-DEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred cccHHHHHHHHHHHcC--CC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 6777888888888774 77 8888888888888888888888888887754 57888887777777788888888888
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch--hh-------hccCChHHHHHH---
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--LL-------CKKTKLVEANRL--- 149 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~-------~~~~~~~~a~~~--- 149 (363)
|+..++.-++ -..+...+.+....-.++..++.|.-+|+-.++.-+.... .+ -+-|+.....+.
T Consensus 230 yerAie~~~~----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 230 YERAIEFLGD----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 8877764210 0112334444444445566677777777666654332211 00 011221111111
Q ss_pred -----HHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------------------------
Q 044256 150 -----LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-------------------------------- 192 (363)
Q Consensus 150 -----~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------------------------------- 192 (363)
++..+..+ +.|-.+|.-.++.-...|+.+...++|+.....-
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 11111111 2333344444444444455555555555544431
Q ss_pred -----------CCCcHhHHHHHHHHH----HhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhc
Q 044256 193 -----------FMPDVFSYSVLINGY----CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257 (363)
Q Consensus 193 -----------~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 257 (363)
++....||..+--.| .++.+...|.+++...+ |..|...+|...|..-.+.
T Consensus 385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--------------G~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--------------GKCPKDKLFKGYIELELQL 450 (677)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--------------ccCCchhHHHHHHHHHHHH
Confidence 222223333222222 23344444444433332 5568888999999998999
Q ss_pred CCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCccHHHHHHHHHHHHccCChhHHHHH
Q 044256 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN-LVADVVAYNILIHALGKEGQIKKENYL 336 (363)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~ 336 (363)
++++....+|++.++.+ |.|-.+|......-...|+.+.|..+|+-+.+.. +......|.+.|..-...|.++.|..+
T Consensus 451 ~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred hhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 99999999999999887 7788999999888889999999999999988753 233466788888888889999999999
Q ss_pred HHHHHHc
Q 044256 337 LLSMEEN 343 (363)
Q Consensus 337 ~~~m~~~ 343 (363)
|+++++.
T Consensus 530 YerlL~r 536 (677)
T KOG1915|consen 530 YERLLDR 536 (677)
T ss_pred HHHHHHh
Confidence 9999985
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=5.7e-12 Score=107.48 Aligned_cols=279 Identities=13% Similarity=-0.038 Sum_probs=170.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchh--hHHHHHHHHHh
Q 044256 36 MEGNIRDASQLVKKMATFGCRPNVTT-CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF--CYGSLIDGLCK 112 (363)
Q Consensus 36 ~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~ 112 (363)
..|+++.|.+.+.+..+. .|+... +-....+....|+.+.|.+.+.+..+. .|+.. ..-.....+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--------~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--------AGNDNILVEIARTRILLA 165 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCcCchHHHHHHHHHHHH
Confidence 345666666666555443 233222 222334445556666666666655442 23222 22223455555
Q ss_pred cCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044256 113 DRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192 (363)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 192 (363)
.|+++.|...++.+.+ .. |-+..++..+...+...|+++.|.+.+..+.+.+
T Consensus 166 ~~~~~~Al~~l~~l~~---------------------------~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 166 QNELHAARHGVDKLLE---------------------------MA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred CCCHHHHHHHHHHHHH---------------------------hC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 5666666655555554 32 3355678889999999999999999999999986
Q ss_pred CCCcHhHHHHHHHHH---HhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044256 193 FMPDVFSYSVLINGY---CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269 (363)
Q Consensus 193 ~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 269 (363)
..+.......-..++ ...+..+++.+.+..+.... .. ..+.+...+..+...+...|+.++|.+++++
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~--------p~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~ 288 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ--------PR-HRRHNIALKIALAEHLIDCDDHDSAQEIIFD 288 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC--------CH-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 543332212111221 22222232222333322211 00 0113677888899999999999999999999
Q ss_pred HHhccCcchHHH--HHHHHHHHHhcCChHHHHHHHHHhhhCCCCccH--HHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 044256 270 LEISNCELFVEI--FNSLIRGCCKFGIFEIASELFNKLSCKNLVADV--VAYNILIHALGKEGQIKKENYLLLSMEENGC 345 (363)
Q Consensus 270 ~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 345 (363)
..+.. +.+... ...........++.+.+.+.++...+.. +-|+ ....++...+.+.|++++|.+.|+.......
T Consensus 289 ~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 289 GLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred HHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 99864 333321 1122222334578889999998888763 3345 6677888999999999999999996444446
Q ss_pred CCCHHHHHHHHHHHhhcC
Q 044256 346 ALDVDTFNTLMISFLQKE 363 (363)
Q Consensus 346 ~p~~~~~~~ll~~~~~~~ 363 (363)
.|+...+..+...+.+.|
T Consensus 367 ~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAG 384 (409)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 899998888877776543
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.4e-11 Score=99.72 Aligned_cols=301 Identities=9% Similarity=0.032 Sum_probs=199.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccC-CchhhHHHHHHHHHhcC
Q 044256 36 MEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK-PNVFCYGSLIDGLCKDR 114 (363)
Q Consensus 36 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~ 114 (363)
...+.+++++=.+.....|++.+...-+....+.-...++++|+.+|+++...++ .+ .|..+|..++ |++..
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP-----YRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP-----YRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-----CcchhHHHHhHHH--HHHhh
Confidence 3345555665566666666544444334444444556677777777777776541 11 2456666655 33332
Q ss_pred CHHHHHHHHHHHHHcCCCcch------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044256 115 LVDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188 (363)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 188 (363)
.-.-+.-.-.-..-....|.+ .+.-.++.++|...|+..++.+ +.....|+.+..-|....+...|+.-++..
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 222111111111112344544 4556778888888888888875 344678888888888888889999888888
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 044256 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP 268 (363)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 268 (363)
++-. +.|-..|-.|.++|.-.+...=|+-.|++...-. +.|...|.+|..+|.+.++.++|++.|+
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-------------PnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-------------PNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-------------CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8763 4477788888888888888888888888776543 4577889999999999999999999999
Q ss_pred HHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CC-Ccc-HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 269 TLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK----NL-VAD-VVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 269 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.....+ ..+...+..|...|-+.++..+|...|.+..+. |. .|. .....-|..-+.+.+++++|.........
T Consensus 457 rai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 457 RAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 888777 456678888899999999999998888776542 22 221 22222244566788888888877666655
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 044256 343 NGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 343 ~g~~p~~~~~~~ll~~~~~ 361 (363)
. .+...--..|++.+.+
T Consensus 536 ~--~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 536 G--ETECEEAKALLREIRK 552 (559)
T ss_pred C--CchHHHHHHHHHHHHH
Confidence 2 5666666666666544
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=5.6e-12 Score=97.36 Aligned_cols=261 Identities=14% Similarity=0.068 Sum_probs=193.7
Q ss_pred cCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-----------hhhcc
Q 044256 72 TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-----------LLCKK 140 (363)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~ 140 (363)
+++.++|.+.|-+|.+.+ +.+..+--+|.+.|-+.|..+.|+++.+.+.+..-.+.. -|...
T Consensus 48 s~Q~dKAvdlF~e~l~~d-------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hcCcchHHHHHHHHHhcC-------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Confidence 467888888888888754 445566667788888888888888888887764322222 45567
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCChhHH
Q 044256 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV----FSYSVLINGYCKNFNVEEA 216 (363)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 216 (363)
|-++.|+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|
T Consensus 121 Gl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 121 GLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 88888888888887754 223456788999999999999999999998887544432 3455666667778889999
Q ss_pred HHHHHHHHHhhHHHHHHHhHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCCh
Q 044256 217 MNVSREMILNGFKKIFNEMKLCNVVPET-FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295 (363)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 295 (363)
..++.+..+.+ |+. ..-..+.+.....|+++.|.+.|+.+.+.+..--+.+...|..+|.+.|+.
T Consensus 200 ~~~l~kAlqa~--------------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 200 RELLKKALQAD--------------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHHHHHHHhhC--------------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 98888887765 433 333445678889999999999999999887556677888999999999999
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044256 296 EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358 (363)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 358 (363)
++....+..+.+.. ++...-..+...-....-.+.|...+.+-+. -+|+..-+..|+..
T Consensus 266 ~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~ 324 (389)
T COG2956 266 AEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHh
Confidence 99999999988763 4444444555544444456667776666665 37999999888864
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1e-11 Score=101.06 Aligned_cols=341 Identities=13% Similarity=0.014 Sum_probs=206.4
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCChhHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-VTTCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 79 (363)
+|++++|++.|.++.+. .|..+..|.....+|...|+|+++.+--.+.++. .|+ +..+..-.+++-..|++++|+
T Consensus 128 ~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred cccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHH
Confidence 47899999999999997 7723888999999999999999999988887765 454 224444455555666665554
Q ss_pred HHHH------------------------------HHHh-ccCCCCCccCCchhhHHHHHHHHHh----------------
Q 044256 80 KLHQ------------------------------EMVN-GMGDFGGIYKPNVFCYGSLIDGLCK---------------- 112 (363)
Q Consensus 80 ~~~~------------------------------~~~~-~~~~~~~~~~~~~~~~~~ll~~~~~---------------- 112 (363)
.=.. +-.. .+ ..+-|+....++....+..
T Consensus 204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr----~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~ 279 (606)
T KOG0547|consen 204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENR----PPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA 279 (606)
T ss_pred HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccC----CCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence 3211 0011 11 0122332222222222110
Q ss_pred ---------cC---CHHHHHHHHHHHHHc---CCCcch-----------------hhhccCChHHHHHHHHHHHHcCCCC
Q 044256 113 ---------DR---LVDQTKDLFMEMKDK---GINANT-----------------LLCKKTKLVEANRLLELMMQRGLNP 160 (363)
Q Consensus 113 ---------~~---~~~~a~~~~~~~~~~---~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (363)
.+ .+..|.+.+.+-... ....+. ...-.|+.-.|..-|+..+.....+
T Consensus 280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~ 359 (606)
T KOG0547|consen 280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF 359 (606)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc
Confidence 01 122233322221111 111110 3345677777777777777765333
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH------------
Q 044256 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------------ 228 (363)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------ 228 (363)
+. .|--+..+|....+.++..+.|+...+.+. -++.+|..-.+.+.-.+++++|..-|++.+..++
T Consensus 360 ~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a 437 (606)
T KOG0547|consen 360 NS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCA 437 (606)
T ss_pred ch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 32 255566667777777777777777666532 2445555555555556666666666666654443
Q ss_pred ----------HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCc-------chHHHHHHHHHHHHh
Q 044256 229 ----------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE-------LFVEIFNSLIRGCCK 291 (363)
Q Consensus 229 ----------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~li~~~~~ 291 (363)
...|++.++ .++..+.+|+....++..+++++.|.+.|+..++..-. +.+.+.-.++..- -
T Consensus 438 ~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-w 515 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-W 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-h
Confidence 222333222 34456778998999999999999999999988765311 1222223333332 3
Q ss_pred cCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044256 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359 (363)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 359 (363)
.+++..|..++.+..+.+ +.....|.+|...-.+.|+.++|+++|++.... ..|-.-++++|
T Consensus 516 k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a~ 577 (606)
T KOG0547|consen 516 KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHAY 577 (606)
T ss_pred hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHHH
Confidence 388999999999998875 335667889999999999999999999987652 33444444444
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.61 E-value=2e-12 Score=114.34 Aligned_cols=267 Identities=10% Similarity=-0.015 Sum_probs=182.9
Q ss_pred CCchhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHH---------hcCChhHHHHHHHHH
Q 044256 21 PLNDVTFNSLIKGFCM-----EGNIRDASQLVKKMATFGCRPN-VTTCDTLITGLR---------RTGNMNLTLKLHQEM 85 (363)
Q Consensus 21 p~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~ 85 (363)
|.+...|...+++... .+++++|+..|++..+. .|+ ...|..+..++. ..+++++|...+++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 3366777777666422 35689999999999876 454 445555555443 224478999999999
Q ss_pred HhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhH
Q 044256 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTY 165 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (363)
.+.. +.+...+..+...+...|++++|...|++..+.. +.+...+
T Consensus 331 l~ld-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~----------------------------P~~~~a~ 375 (553)
T PRK12370 331 TELD-------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS----------------------------PISADIK 375 (553)
T ss_pred HhcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------------CCCHHHH
Confidence 9865 5567888888888999999999999999988752 2235567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC-Ch
Q 044256 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ET 244 (363)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 244 (363)
..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...++++.... .| +.
T Consensus 376 ~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------------~p~~~ 441 (553)
T PRK12370 376 YYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-------------LQDNP 441 (553)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------------cccCH
Confidence 77888889999999999999998887322 22233344445666888999999998876542 24 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCccHHHHHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN-LVADVVAYNILIHA 323 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~ 323 (363)
..+..+..++...|+.++|...++++.... +.+....+.+...|...| +.|...++.+.+.. -.+....+ +-..
T Consensus 442 ~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~ 516 (553)
T PRK12370 442 ILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLV 516 (553)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHH
Confidence 456667777888999999999998876542 334445566666777777 47777777766431 12222222 3334
Q ss_pred HHccCChhHHHHHHHHHHHcC
Q 044256 324 LGKEGQIKKENYLLLSMEENG 344 (363)
Q Consensus 324 ~~~~g~~~~a~~~~~~m~~~g 344 (363)
+.-.|+.+.+..+ +++.+.|
T Consensus 517 ~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 517 LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHhhhHHHHHH-HHhhccc
Confidence 4456776666666 7777653
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=4.5e-13 Score=112.78 Aligned_cols=256 Identities=14% Similarity=0.037 Sum_probs=194.8
Q ss_pred ChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-ch------hhhccCChHHH
Q 044256 74 NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-NT------LLCKKTKLVEA 146 (363)
Q Consensus 74 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~------~~~~~~~~~~a 146 (363)
+..+|...|+.+.+. +.-+..+...+..+|...+++++|.++|+.+.+..+-- +. ++-...+.-+-
T Consensus 334 ~~~~A~~~~~klp~h-------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVAL 406 (638)
T ss_pred HHHHHHHHHHhhHHh-------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHH
Confidence 568899999986654 34445667788999999999999999999998753221 11 11112221111
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044256 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMIL 225 (363)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (363)
--+-..+.... +-.+.+|.++.++|.-.++++.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+.
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 11222223322 445789999999999999999999999999886 34 678888888888999999999999988764
Q ss_pred hhHHHHHHHhHhcCCCCChHHHH---HHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHH
Q 044256 226 NGFKKIFNEMKLCNVVPETFTCN---IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELF 302 (363)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 302 (363)
.++..|+ .+.-.|.+.++++.|+-.|+++.+.+ |.+......+...+-+.|+.++|++++
T Consensus 484 ----------------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 484 ----------------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred ----------------CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHH
Confidence 4555555 46678999999999999999999887 778888888999999999999999999
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHH
Q 044256 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL-MISF 359 (363)
Q Consensus 303 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~ 359 (363)
+++...+ +.|+..--..+..+...+++++|+..++++.+ +.|+..+...+ -+.|
T Consensus 547 ~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 547 EKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIY 601 (638)
T ss_pred HHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHH
Confidence 9999876 34565555567778889999999999999998 67776554444 3444
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.8e-11 Score=96.67 Aligned_cols=252 Identities=11% Similarity=0.032 Sum_probs=195.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-ch-------hhh
Q 044256 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-NT-------LLC 138 (363)
Q Consensus 67 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-------~~~ 138 (363)
.++-...+.+++.+-.+.....| .+.+...-+....+.....+++.|+.+|+++.+.++-. +. .+.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~g------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVG------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 34444556677777777777766 45555555555566677889999999999999874321 11 333
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHH
Q 044256 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218 (363)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 218 (363)
+..+-.- ..+..-...--+-.+.|+.++.+.|+-.++.++|...|+...+.+ +.....|..+..-|....+...|..
T Consensus 309 ~~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 3322221 222211111112334688888999999999999999999999874 2256678888889999999999999
Q ss_pred HHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHH
Q 044256 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298 (363)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 298 (363)
.++.++.-. +.|-..|-.|.++|.-.+.+.=|+-.|++..... |.|...|.+|..+|.+.++.++|
T Consensus 386 sYRrAvdi~-------------p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eA 451 (559)
T KOG1155|consen 386 SYRRAVDIN-------------PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEA 451 (559)
T ss_pred HHHHHHhcC-------------chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHH
Confidence 999988765 3577889999999999999999999999999876 77899999999999999999999
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 299 SELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.+.|......| ..+...+..+...|-+.++..+|.+.|++.++
T Consensus 452 iKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 452 IKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999876 34678999999999999999999999998876
No 46
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.3e-10 Score=102.26 Aligned_cols=254 Identities=11% Similarity=0.047 Sum_probs=142.4
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----cch------hhhccCChHHHHHHHHHHHHcCCCCchhhHH
Q 044256 97 KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN----ANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYT 166 (363)
Q Consensus 97 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (363)
+-|+...+.|...|.-.|++..+..+...+...... ... .+...|++++|...|-+..+..-.-....+.
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 445666777777777777777777777776654311 111 5567788888888777776654222233445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC----ChhHHHHHHHHHHHhhH--------------
Q 044256 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF----NVEEAMNVSREMILNGF-------------- 228 (363)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~-------------- 228 (363)
.+...+.+.|+.+.+...|+.+.... +.+..+...|...|...+ ..+.|..++.+..+..+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 56777777788888887777776651 223344444444444433 34555555554443321
Q ss_pred -----------HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---cCcchH------HHHHHHHHH
Q 044256 229 -----------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS---NCELFV------EIFNSLIRG 288 (363)
Q Consensus 229 -----------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~ 288 (363)
....+.+...+..+.+...|.+...+...|++.+|...|...... ...++. .+--.+...
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 223333444444566667777777777777777777777776544 112222 122234444
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCCHHHH
Q 044256 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN-GCALDVDTF 352 (363)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~ 352 (363)
+-..++++.|.+.|..+.... +--+..|..+.......+...+|...++..... .-.|+..+|
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 555667777777777776652 112233333332222335566666666666553 233444443
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.54 E-value=2.3e-14 Score=82.23 Aligned_cols=50 Identities=32% Similarity=0.474 Sum_probs=44.6
Q ss_pred ccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 312 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999998999999999999998875
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=99.54 E-value=3.7e-11 Score=106.41 Aligned_cols=236 Identities=12% Similarity=0.026 Sum_probs=169.0
Q ss_pred CCcccHHHHHHHHHh-----cCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHH-H------HHhcCCHHHHHHHHH
Q 044256 57 PNVTTCDTLITGLRR-----TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID-G------LCKDRLVDQTKDLFM 124 (363)
Q Consensus 57 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~------~~~~~~~~~a~~~~~ 124 (363)
.+...|...+++... .+.+++|...|++..+..+. .+.....-..+. . +...+++++|...++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-----~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-----SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 344555555555322 23467999999999988742 233332222111 1 224567899999999
Q ss_pred HHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 044256 125 EMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204 (363)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 204 (363)
+..+.. +.+...+..+...+...|++++|...|++..+.+ +.+...+..+.
T Consensus 329 ~Al~ld----------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg 379 (553)
T PRK12370 329 KATELD----------------------------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYG 379 (553)
T ss_pred HHHhcC----------------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 998752 2346678888888899999999999999998874 33566788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHH
Q 044256 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET-FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283 (363)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 283 (363)
..+...|++++|...+++..+.+ |+. ..+..++..+...|++++|...++++.....+-++..+.
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l~--------------P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKLD--------------PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--------------CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHH
Confidence 89999999999999999998765 543 233344555677899999999999987664233455677
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 284 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.+..++...|++++|...+.++.... +.+....+.+...|+..| ++|...++.+.+.
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 88889999999999999999986652 223445555666777777 4888888887764
No 49
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=4.1e-10 Score=95.26 Aligned_cols=313 Identities=11% Similarity=0.020 Sum_probs=193.4
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 82 (363)
.++-|..+|...++- .|.+...|......--..|..++...+|++....- +.....|-....-+-..|+...|..++
T Consensus 531 ~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 531 AIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred hHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 355666777776664 66566777777776667777777777777777651 223334555555566677888888887
Q ss_pred HHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch------hhhccCChHHHHHHHHHHHHc
Q 044256 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLELMMQR 156 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~ 156 (363)
..+.+.. +.+..+|-+.+..-....+++.|..+|.+....+..+.. ...-.+..++|.++++..++.
T Consensus 608 ~~af~~~-------pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 608 DQAFEAN-------PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHhC-------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 7777754 445677777777777777888888888777765444333 233466777777777777665
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhH
Q 044256 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236 (363)
Q Consensus 157 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (363)
++.-...|-.+...+-+.++++.|...|..=.+. ++-.+..|..|...=-+.|..-.|..++++....+
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--------- 749 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--------- 749 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC---------
Confidence 1222445666666666777777777766554433 23344456666555556667777766665554333
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcch------------------------------HHHHHHHH
Q 044256 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF------------------------------VEIFNSLI 286 (363)
Q Consensus 237 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------~~~~~~li 286 (363)
+-+...|-..|+.-.+.|+.+.|..++.+..+. ++.+ +.+...+.
T Consensus 750 ----Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia 824 (913)
T KOG0495|consen 750 ----PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIA 824 (913)
T ss_pred ----CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHH
Confidence 235566777777777777777777777666543 2333 33334444
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
..+.....+++|.+.|.+....+ +.+..+|.-+...+.+.|.-+.-.+++..+..
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 44555555666666666665553 33445555555666666655555556655554
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=5.9e-10 Score=90.87 Aligned_cols=325 Identities=10% Similarity=0.019 Sum_probs=195.4
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~ 80 (363)
+++..|..+|++++... ..+...|-..+.+-.++.++..|..++++.... -|-+. .|--.+.+--..|+...|.+
T Consensus 87 ~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 45667777777777643 225666777777777777777777777776654 33322 23333444445566666666
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch------hhhccCChHHHHHHHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLELMM 154 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~ 154 (363)
+|+...+ ..|+...|.+.|..-.+-+.++.|..+|+...-..+.... .-.+.|+...+..+++..+
T Consensus 163 iferW~~--------w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 163 IFERWME--------WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHc--------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6666665 5566666666666666666666666666665543222111 1123444444444444433
Q ss_pred Hc-C-----------------------------------CCCc--hhhHHHHHHHHHhcCCHHHHHHH--------HHHH
Q 044256 155 QR-G-----------------------------------LNPV--IFTYTPLLNGYCLVGKVNVAIAL--------FDSM 188 (363)
Q Consensus 155 ~~-~-----------------------------------~~~~--~~~~~~li~~~~~~~~~~~a~~~--------~~~~ 188 (363)
+. | ++.+ ...|..+...--+-|+....... ++.+
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 21 0 1111 12222222222233443332221 1222
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH--------------------------------HHHHHHhH
Q 044256 189 ARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF--------------------------------KKIFNEMK 236 (363)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~~~~~~~ 236 (363)
+..+ +-|-.+|--.+..-...|+.+...+++++++.+.+ .++++...
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2221 23445566666666677888888888888765433 33333333
Q ss_pred hcCCCCChHHHHHHHH----HHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCc
Q 044256 237 LCNVVPETFTCNIFID----GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312 (363)
Q Consensus 237 ~~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 312 (363)
+ -++....||.-+-- .-.++.++..|.+++...+ |..|...+|...|..-.+.++++.+..++++.++.+ +-
T Consensus 394 ~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 D-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred h-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 3 12223334443322 2346678888888888776 457888899999999899999999999999999886 55
Q ss_pred cHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 313 DVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 313 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
|..+|......-...|+.+.|..+|+-.++.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 7888888888878899999999999998874
No 51
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.53 E-value=2.2e-10 Score=98.48 Aligned_cols=287 Identities=14% Similarity=0.078 Sum_probs=206.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHH
Q 044256 30 LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109 (363)
Q Consensus 30 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 109 (363)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..++..+ +.|..-|..+..+
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-------Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-------PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHH
Confidence 345567889999999999875544 33334455677888999999999999999999975 5555556666666
Q ss_pred HHhc-----CCHHHHHHHHHHHHHcCCCcch------hhhccCChH-HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 044256 110 LCKD-----RLVDQTKDLFMEMKDKGINANT------LLCKKTKLV-EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177 (363)
Q Consensus 110 ~~~~-----~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (363)
..-. .+.+....+|+++...-+.... .+.....+. .+..++......|+| .+|+.+-..|....+
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 5222 3577888899988776543222 122222333 355666777788865 367777777776666
Q ss_pred HHHHHHHHHHHHHc----C----------CCCcHh--HHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCC
Q 044256 178 VNVAIALFDSMARK----G----------FMPDVF--SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241 (363)
Q Consensus 178 ~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (363)
.+-...++...... + -+|+.. ++..+...|...|++++|+.++++.+...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-------------- 224 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-------------- 224 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------------
Confidence 66666666665432 1 134443 44556778889999999999999888764
Q ss_pred CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHH-----
Q 044256 242 PE-TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV----- 315 (363)
Q Consensus 242 ~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----- 315 (363)
|+ +..|..-...+-..|++.+|.+.++...... .-|..+-+-.+..+.++|++++|.+++....+.+..|-..
T Consensus 225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 225 PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 55 6678888899999999999999999999887 6678888888899999999999999999988765433221
Q ss_pred -HH--HHHHHHHHccCChhHHHHHHHHHHH
Q 044256 316 -AY--NILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 316 -~~--~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.| .....+|.+.|++..|++-|....+
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 2335688999999999887776654
No 52
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=2.3e-10 Score=99.96 Aligned_cols=318 Identities=12% Similarity=0.015 Sum_probs=233.0
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|+.+.+...+-.+.. ..|.|...|..+.....+.|++++|.-.|.+.++.. +++...+---...|-+.|+...|...
T Consensus 187 Gd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~ 263 (895)
T KOG2076|consen 187 GDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMET 263 (895)
T ss_pred ccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHH
Confidence 677777776655554 478789999999999999999999999999999885 45555555667889999999999999
Q ss_pred HHHHHhccCCCCCccCCchhh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch---------hhhccCChHHHHH
Q 044256 82 HQEMVNGMGDFGGIYKPNVFC----YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---------LLCKKTKLVEANR 148 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~a~~ 148 (363)
|.++.+.. .+.|..- --..++.+...++-+.|.+.++.....+..... .+.....++.+..
T Consensus 264 f~~l~~~~------p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~ 337 (895)
T KOG2076|consen 264 FLQLLQLD------PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALM 337 (895)
T ss_pred HHHHHhhC------CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhH
Confidence 99999865 1222222 233456677778889999999888773221111 6677888888888
Q ss_pred HHHHHHHcCC---------------------------CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCcHhH
Q 044256 149 LLELMMQRGL---------------------------NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF--MPDVFS 199 (363)
Q Consensus 149 ~~~~~~~~~~---------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 199 (363)
.+........ .++..+ --+.-++.+....+....+...+.+..+ .-+...
T Consensus 338 ~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL 416 (895)
T KOG2076|consen 338 KIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDL 416 (895)
T ss_pred HHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHH
Confidence 7776665211 222222 1223344455556666666666666653 335667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchH
Q 044256 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279 (363)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 279 (363)
|.-+..+|.+.|++.+|+.++..+.... ...+...|-.+..+|...|..++|.+.|++++... |.+.
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~~~------------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~ 483 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITNRE------------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNL 483 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcCc------------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCch
Confidence 8889999999999999998888776543 22346688889999999999999999999999875 6677
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhh--------CCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 280 EIFNSLIRGCCKFGIFEIASELFNKLSC--------KNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 280 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
..-..|-..+-+.|+.++|.+++..+.. .+..|+....-.....+.+.|+.++-+.+-..|+.
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7788888999999999999999999642 23455666666667778888998886666655554
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=3.8e-11 Score=94.86 Aligned_cols=203 Identities=11% Similarity=-0.018 Sum_probs=163.9
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 044256 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177 (363)
Q Consensus 98 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (363)
.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~la~~~~~~~~ 80 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD----------------------------PDDYLAYLALALYYQQLGE 80 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------cccHHHHHHHHHHHHHcCC
Confidence 345678888889999999999999998887541 2345677888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhc
Q 044256 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257 (363)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 257 (363)
++.|.+.++...+.. +.+...+..+...+...|++++|...+++..... ........+..+..++...
T Consensus 81 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 81 LEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-----------LYPQPARSLENAGLCALKA 148 (234)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-----------ccccchHHHHHHHHHHHHc
Confidence 999999999988764 3356677788888999999999998888776431 1112344666778888999
Q ss_pred CCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHH
Q 044256 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337 (363)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 337 (363)
|++++|...+.+..... +.+...+..+...+...|++++|...+++.... .+.+...+..+...+...|+.++|..+.
T Consensus 149 g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 149 GDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred CCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999998765 556778889999999999999999999999876 3556777778888888999999999998
Q ss_pred HHHHH
Q 044256 338 LSMEE 342 (363)
Q Consensus 338 ~~m~~ 342 (363)
+.+..
T Consensus 227 ~~~~~ 231 (234)
T TIGR02521 227 AQLQK 231 (234)
T ss_pred HHHHh
Confidence 88765
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.51 E-value=1.9e-11 Score=103.69 Aligned_cols=261 Identities=16% Similarity=0.094 Sum_probs=188.1
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHhccCC-
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF-----G-CRPNVTT-CDTLITGLRRTGNMNLTLKLHQEMVNGMGD- 91 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 91 (363)
.|.-..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++......
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3434556777999999999999999999987764 2 1233333 344777889999999999999998865422
Q ss_pred CCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCc-hhhHHHHHH
Q 044256 92 FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPV-IFTYTPLLN 170 (363)
Q Consensus 92 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~ 170 (363)
++...+.-..+++.|..+|.+.|++++|...++...+ ++++.... ..|. ...++.+..
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~--------------------I~~~~~~~-~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE--------------------IYEKLLGA-SHPEVAAQLSELAA 333 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------------------HHHHhhcc-ChHHHHHHHHHHHH
Confidence 2233344567888999999999999999999988664 23331111 1222 234666778
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCC----cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC
Q 044256 171 GYCLVGKVNVAIALFDSMARK---GFMP----DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243 (363)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (363)
.|...++++.|..+++...+. -+.+ -..+++.|...|...|++++|.+++++++.. .++.......-.
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~-----~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI-----LRELLGKKDYGV 408 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-----HHhcccCcChhh
Confidence 888999999999999866543 1222 2357889999999999999999999988643 222222222333
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----c--CcchHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEIS----N--CELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 306 (363)
...++.+...|.+.+++.+|.++|.+.... | .+-...+|..|...|.+.|+++.|.++.+.+.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 556788889999999999999988876432 2 23345688899999999999999999888776
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=7.1e-10 Score=93.89 Aligned_cols=292 Identities=10% Similarity=-0.010 Sum_probs=217.5
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|..++-..+|.++... .|.....|-.....+...|+...|..++....+.. +.+...|...+..-.....++.|..+
T Consensus 564 gt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred CcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHH
Confidence 5566777788888876 56467778888888888899999999998888774 34667888888888888899999999
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHH---cC-
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ---RG- 157 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~- 157 (363)
|.+... ..|+..+|---+..---.+..++|.+++++.++.-..-...+...|+..+-..-++.... .|
T Consensus 641 lakar~--------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 641 LAKARS--------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred HHHHhc--------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 988887 457777777766666677888999999988887655444444444444443333333221 12
Q ss_pred --CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH-------
Q 044256 158 --LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------- 228 (363)
Q Consensus 158 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------- 228 (363)
++-.+..|-.|...--+.|++-.|..+++...-.+ +-+...|-..|+.-.+.|..+.|..++.+.++.-+
T Consensus 713 k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 713 KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence 33445567777777777888889999998877764 33777888888888899999999888877765533
Q ss_pred ------------HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChH
Q 044256 229 ------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFE 296 (363)
Q Consensus 229 ------------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 296 (363)
....+.+++ ...|+++...+...+-...++++|.+.|.+.++.+ +-+..+|.-+...+.++|.-+
T Consensus 792 EaI~le~~~~rkTks~DALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHHhccCcccchHHHHHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHH
Confidence 112233333 23566677777778888889999999999999876 666789999999999999999
Q ss_pred HHHHHHHHhhhC
Q 044256 297 IASELFNKLSCK 308 (363)
Q Consensus 297 ~a~~~~~~~~~~ 308 (363)
.-.+++......
T Consensus 869 d~kev~~~c~~~ 880 (913)
T KOG0495|consen 869 DQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHhcc
Confidence 999999888766
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=2.6e-11 Score=95.84 Aligned_cols=192 Identities=14% Similarity=0.064 Sum_probs=157.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
.+..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~ 101 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------PNNGDV 101 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHH
Confidence 46778889999999999999999999988763 3446677888899999999999999999998864 456678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch---------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC 173 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (363)
+..+...+...|++++|...+++..+....+.. .+...|++++|...+.+..+.. +.+...+..+...+.
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence 888899999999999999999999875332221 5678899999999999988764 334667888899999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 044256 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224 (363)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (363)
..|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999998876 34466677777888888999999987766654
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=8.2e-12 Score=108.57 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=66.2
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 044256 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355 (363)
Q Consensus 276 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 355 (363)
.|++.+|.+++.+-..+|+.+.|..++.+|.+.|++.+..-|..++.+ .++...+..+++.|.+.|+.|+..|+.-.
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 577888888888888888888888888888888888888877777765 67777788888888888888888888776
Q ss_pred HHHHhh
Q 044256 356 MISFLQ 361 (363)
Q Consensus 356 l~~~~~ 361 (363)
+-.+..
T Consensus 278 vip~l~ 283 (1088)
T KOG4318|consen 278 VIPQLS 283 (1088)
T ss_pred HHhhhc
Confidence 665544
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=7.2e-10 Score=88.41 Aligned_cols=272 Identities=12% Similarity=0.036 Sum_probs=181.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCH
Q 044256 37 EGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116 (363)
Q Consensus 37 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 116 (363)
.|+|.+|.+...+-.+.+-. ....|..-..+.-..|+.+.+-.++.+.-+.. -.++....-+..+.....|++
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------GDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHhCCCc
Confidence 35555555555554444311 12223333444445555555555555555432 133344444444455555555
Q ss_pred HHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 044256 117 DQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD 196 (363)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (363)
+.|..-++++.+ .+ +-+.........+|.+.|++.....++..+.+.|.-.+
T Consensus 170 ~aA~~~v~~ll~---------------------------~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 170 PAARENVDQLLE---------------------------MT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred hhHHHHHHHHHH---------------------------hC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 555555555444 33 34567888899999999999999999999999876544
Q ss_pred H-------hHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044256 197 V-------FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269 (363)
Q Consensus 197 ~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 269 (363)
. .+|..+++-....+..+.-...++..... .+.++..-.+++.-+...|+.++|.++.++
T Consensus 222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-------------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-------------LRNDPELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-------------hhcChhHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3 35666666555555555544444443322 234566777888889999999999999999
Q ss_pred HHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 044256 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349 (363)
Q Consensus 270 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 349 (363)
..+.+..|+ -...-.+.+-++.+.-.+..+.-.... +-++..+.++...|.+.+.|.+|...|+..++ .+|+.
T Consensus 289 ~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~ 361 (400)
T COG3071 289 ALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSA 361 (400)
T ss_pred HHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCCh
Confidence 998876665 222334567788888888777766552 44668899999999999999999999998877 78999
Q ss_pred HHHHHHHHHHhhcC
Q 044256 350 DTFNTLMISFLQKE 363 (363)
Q Consensus 350 ~~~~~ll~~~~~~~ 363 (363)
.+|..+-.+|.+.|
T Consensus 362 ~~~~~la~~~~~~g 375 (400)
T COG3071 362 SDYAELADALDQLG 375 (400)
T ss_pred hhHHHHHHHHHHcC
Confidence 99999999887654
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.48 E-value=2e-10 Score=97.57 Aligned_cols=275 Identities=16% Similarity=0.053 Sum_probs=193.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhh
Q 044256 60 TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF-CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138 (363)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 138 (363)
.+...+...|...|+++.|..+++...+.-........|... ..+.+...|...+++.+|..+|+++...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 466678899999999999999999887751111111234433 3444778888999999999999887642
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCcHh-HHHHHHHHHHhcC
Q 044256 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK-----GF-MPDVF-SYSVLINGYCKNF 211 (363)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~ 211 (363)
++.......+.-..+++.|..+|.+.|++++|...++...+- |. .|... .++.+...+...+
T Consensus 271 -----------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~ 339 (508)
T KOG1840|consen 271 -----------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN 339 (508)
T ss_pred -----------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc
Confidence 333333333334677888889999999999998888765432 21 22322 3556677788899
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-------CcchHHHHHH
Q 044256 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-------CELFVEIFNS 284 (363)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ 284 (363)
++++|..+++...+ ++..........-..+++.|...|...|++++|.+++++++... ..-....++.
T Consensus 340 ~~Eea~~l~q~al~-----i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 340 EYEEAKKLLQKALK-----IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred chhHHHHHHHHHHH-----HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 99999999987653 22222221112234679999999999999999999999987542 1223456788
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhC----C--CCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc------CCCCCHHHH
Q 044256 285 LIRGCCKFGIFEIASELFNKLSCK----N--LVADVVAYNILIHALGKEGQIKKENYLLLSMEEN------GCALDVDTF 352 (363)
Q Consensus 285 li~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~ 352 (363)
|...|.+.+++.+|.++|.+.... | -+-...+|..|...|.+.|+++.|.++.+..... ...|+....
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDE 494 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHH
Confidence 899999999999999998876532 2 1223568899999999999999999998887632 345666555
Q ss_pred HHHHHHH
Q 044256 353 NTLMISF 359 (363)
Q Consensus 353 ~~ll~~~ 359 (363)
......+
T Consensus 495 ~~~~~~~ 501 (508)
T KOG1840|consen 495 KLRLADL 501 (508)
T ss_pred HHhhhHH
Confidence 5554443
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.2e-10 Score=92.56 Aligned_cols=283 Identities=11% Similarity=0.025 Sum_probs=134.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
++.....-.+-+-..+++++..++++...+.. ++....+..-|.++...|+..+-..+=.++... .|..+.+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-------yP~~a~s 314 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-------YPSKALS 314 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-------CCCCCcc
Confidence 33344444444555666666666666666543 445555555555666666666666665666654 2445666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (363)
|-++.-.|...|...+|.+.|.+....+..- ...|-.+...|+-.|..|+|.
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~f----------------------------gpaWl~fghsfa~e~EhdQAm 366 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTF----------------------------GPAWLAFGHSFAGEGEHDQAM 366 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccc----------------------------cHHHHHHhHHhhhcchHHHHH
Confidence 6666666666666666666666654432221 224444444455555555555
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 044256 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 262 (363)
..+...-+. ++-....+--+.--|.+.+...-|...|....... +.|+...+-+.-.....+.+.+
T Consensus 367 aaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-------------P~Dplv~~Elgvvay~~~~y~~ 432 (611)
T KOG1173|consen 367 AAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-------------PSDPLVLHELGVVAYTYEEYPE 432 (611)
T ss_pred HHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-------------CCcchhhhhhhheeehHhhhHH
Confidence 444433322 00011111112222444444444444444433221 1233333333333333444455
Q ss_pred HHHHHHHHHhc------cCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHH
Q 044256 263 VMELFPTLEIS------NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336 (363)
Q Consensus 263 a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 336 (363)
|..+|+..... ..+....+++.|..+|.+.+.+++|+..+++.+... +.+..++.++.-.|...|+++.|...
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHH
Confidence 55544444311 001122334445555555555555555555544442 33444555555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH
Q 044256 337 LLSMEENGCALDVDTFNTLMIS 358 (363)
Q Consensus 337 ~~~m~~~g~~p~~~~~~~ll~~ 358 (363)
|.+.+. +.|+..+...++..
T Consensus 512 fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 512 FHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHh--cCCccHHHHHHHHH
Confidence 555443 44554444444443
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=9.7e-12 Score=96.29 Aligned_cols=229 Identities=14% Similarity=0.015 Sum_probs=137.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCC
Q 044256 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTK 142 (363)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 142 (363)
+.+..+|.+.|.+.+|.+.++...+ ..|-+.||-.|-..|.+..++..|+.++.+-.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~--------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~------------- 285 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT--------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS------------- 285 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh--------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-------------
Confidence 5566777777777777777777666 3456667777777777777777777777766653
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 044256 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222 (363)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (363)
++-++.....+.+.+-..++.++|.++|+...+.. +.++.....+...|.-.++++.|+..+++
T Consensus 286 ---------------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 286 ---------------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred ---------------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHH
Confidence 12233333444555555666666666666655542 22344444444555556666666666666
Q ss_pred HHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcch--HHHHHHHHHHHHhcCChHHHHH
Q 044256 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF--VEIFNSLIRGCCKFGIFEIASE 300 (363)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~ 300 (363)
+++-|. .++..|+.+.-+|...++++-++.-|.+....--.|+ ..+|-.|.......||+..|.+
T Consensus 350 iLqmG~-------------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 350 ILQMGA-------------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred HHHhcC-------------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH
Confidence 655542 4555666666666666666666666665544322222 3455555555666666666666
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 301 LFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.|+-....+ ..+...++.|...-.+.|++++|..++.....
T Consensus 417 cfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 417 CFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 666666554 33556666666666666666666666666655
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=4.2e-12 Score=110.31 Aligned_cols=270 Identities=13% Similarity=0.113 Sum_probs=150.8
Q ss_pred HHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 044256 9 MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88 (363)
Q Consensus 9 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 88 (363)
..+..+...|+.| +..+|..+|.-|+..|+.+.|- +|.-|.....+.+...|+.++......++.+.+.
T Consensus 11 nfla~~e~~gi~P-nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILP-NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCC-chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 4567788899999 9999999999999999999999 9999988877778888999998888888766554
Q ss_pred cCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCcchhhhccCChHHHHHHHHHHH-HcCCCCchhhHH
Q 044256 89 MGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME-MKDKGINANTLLCKKTKLVEANRLLELMM-QRGLNPVIFTYT 166 (363)
Q Consensus 89 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~ 166 (363)
.|.+.+|..|..+|...||+.. ++..++ +..... .+...|.-.....++..+. ..+.-||..
T Consensus 80 --------ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~----sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 --------EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQ----SFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred --------CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHh----hhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 5778899999999999999866 333333 222110 1122222222222222211 111222221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcC-ChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCCh
Q 044256 167 PLLNGYCLVGKVNVAIALFDSMARKGF-MPDVFSYSVLINGYCKNF-NVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244 (363)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (363)
..+....-.|-++.+.+++..+..... .|... +++-+.... .+++-....+... -.|++
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~---------------e~~~s 204 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLV---------------EAPTS 204 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhh---------------cCCCh
Confidence 122223333444444444433322110 01111 122222111 1111111111110 02555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (363)
.+|.+++.+-...|+.+.|..++.+|.+.|++.+..-|..|+-+ .++...+..++.-|...|+.|+..|+...+..+
T Consensus 205 ~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 205 ETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhh
Confidence 66666666655666666666666666666665555555555444 555555555666666666666666655555555
Q ss_pred Hcc
Q 044256 325 GKE 327 (363)
Q Consensus 325 ~~~ 327 (363)
..+
T Consensus 282 l~N 284 (1088)
T KOG4318|consen 282 LSN 284 (1088)
T ss_pred hcc
Confidence 443
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=2.2e-13 Score=78.17 Aligned_cols=50 Identities=46% Similarity=1.026 Sum_probs=48.5
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 044256 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209 (363)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (363)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=3.9e-10 Score=91.54 Aligned_cols=272 Identities=14% Similarity=0.103 Sum_probs=199.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHH--HHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHH
Q 044256 33 GFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL--ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL 110 (363)
Q Consensus 33 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 110 (363)
-+.++|+++.|++++.-+.+..-+.-...-+.| +..+-...++..|.+.-+.....+ +-+......-....
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-------ryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-------RYNAAALTNKGNIA 500 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-------ccCHHHhhcCCcee
Confidence 477899999999999888765322111122222 222222347788888777776644 33333333333444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 044256 111 CKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183 (363)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 183 (363)
...|++++|.+.|++.+..+..-.. .+...|+.++|++.|-++... +..+..+...+.+.|-...+...|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 5679999999999998876433222 456788999999988776543 12356677788889999999999999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 044256 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEV 263 (363)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 263 (363)
++.+.... ++.|+...+.|...|-+.|+-.+|++.+-.-.+ -++.+..+...|...|....-++++
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-------------yfp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-------------YFPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-------------ccCcchHHHHHHHHHHHhhHHHHHH
Confidence 99877654 666889999999999999999999876433221 2345778888899999999999999
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHH-HhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCC
Q 044256 264 MELFPTLEISNCELFVEIFNSLIRGC-CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329 (363)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 329 (363)
+.+|++..- +.|+..-|..++..| .+.|++.+|..++....+. ++-|......|++.+...|.
T Consensus 646 i~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 646 INYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999998765 489999998887665 4779999999999998876 67789999999998887764
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=4.4e-11 Score=92.75 Aligned_cols=213 Identities=9% Similarity=-0.007 Sum_probs=154.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 044256 99 NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178 (363)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (363)
|-.--+.+..+|.+.|.+.+|.+.++.-.+. .|-+.||..|-..|.+..++
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-----------------------------~~~~dTfllLskvY~ridQP 272 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-----------------------------FPHPDTFLLLSKVYQRIDQP 272 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-----------------------------CCchhHHHHHHHHHHHhccH
Confidence 3334456778888888888888888877664 44556788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcC
Q 044256 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258 (363)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 258 (363)
..|+.++.+-.+. ++.|+....-+.+.+...++.++|.++++...+.+ +.+......+...|...+
T Consensus 273 ~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-------------~~nvEaiAcia~~yfY~~ 338 (478)
T KOG1129|consen 273 ERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-------------PINVEAIACIAVGYFYDN 338 (478)
T ss_pred HHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-------------CccceeeeeeeeccccCC
Confidence 8888888887765 23333333446667777888888888888887764 345556666677778888
Q ss_pred CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHccCChhHHHHH
Q 044256 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD--VVAYNILIHALGKEGQIKKENYL 336 (363)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~ 336 (363)
+++.|+.+|+++...| .-++..|+.+.-+|.-.++++-++.-|++....--.|+ ...|..+-......||+.-|.+.
T Consensus 339 ~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 339 NPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred ChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 8888888888888888 44678888888888888888888888888776532333 45677777777888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHH
Q 044256 337 LLSMEENGCALDVDTFNTLM 356 (363)
Q Consensus 337 ~~~m~~~g~~p~~~~~~~ll 356 (363)
|+-.+..+ .-+...++-|-
T Consensus 418 frlaL~~d-~~h~ealnNLa 436 (478)
T KOG1129|consen 418 FRLALTSD-AQHGEALNNLA 436 (478)
T ss_pred HHHHhccC-cchHHHHHhHH
Confidence 88877653 22334444443
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=3.6e-09 Score=89.53 Aligned_cols=329 Identities=11% Similarity=0.045 Sum_probs=200.2
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|+.++|........+. .+.+...|+.+.-.+....++++|+..|......+ +.|...|..+.-.-++.++++.....
T Consensus 55 g~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 5667777777777765 44477788888888888888888888888888764 44556676666666677777777777
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-Ccch--------------hhhccCChHHH
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-NANT--------------LLCKKTKLVEA 146 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~a 146 (363)
-....+.. +.....|..+..++.-.|+...|..++++..+... .|+. ...+.|.+++|
T Consensus 132 r~~LLql~-------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 132 RNQLLQLR-------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred HHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 77777643 44466788888888888999999999998877653 2222 44566666666
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH-hcCChhHHH-HHHHHHH
Q 044256 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC-KNFNVEEAM-NVSREMI 224 (363)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~ 224 (363)
.+.+......- ......-..-...+.+.+++++|..++..+... .||..-|...+..+. +..+.-+++ .+|....
T Consensus 205 le~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 205 LEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 66655443221 111112233345566777777777777777766 455555544333222 222222222 2333221
Q ss_pred HhhH-----------------------------------------HH---------HHHHh--------HhcC-------
Q 044256 225 LNGF-----------------------------------------KK---------IFNEM--------KLCN------- 239 (363)
Q Consensus 225 ~~~~-----------------------------------------~~---------~~~~~--------~~~~------- 239 (363)
+.-. .. +++.+ ...|
T Consensus 282 ~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 282 EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence 1111 00 11111 1110
Q ss_pred ---CCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccH
Q 044256 240 ---VVPETFTCN--IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314 (363)
Q Consensus 240 ---~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 314 (363)
-+|++..|. .++..+-+.|+++.|...++..+.+- |.-+..|..=.+.+...|++++|..++++..+.+ .+|.
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR 439 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADR 439 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhH
Confidence 134444333 34566677788888888888777652 3334556666677778888888888888887765 3344
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 044256 315 VAYNILIHALGKEGQIKKENYLLLSMEENGC 345 (363)
Q Consensus 315 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 345 (363)
..=.--..-..++++.++|.++.-.....|.
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 4333444455667777888777777776654
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.1e-09 Score=91.12 Aligned_cols=276 Identities=11% Similarity=-0.029 Sum_probs=216.3
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
+++.+..++++.+.+. .|.+...+..-|.++...|+..+-..+=.++.+.- +-...+|-++..-|.-.|+..+|.+.
T Consensus 258 c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 258 CRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred ChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 5678888999999886 77788899999999999999999998888888873 44567999999999999999999999
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCc
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPV 161 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (363)
|.+....++ .=...|-.....|+-.|..+.|+..|....+.-. ....|
T Consensus 335 ~SKat~lD~-------~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~------------------------G~hlP- 382 (611)
T KOG1173|consen 335 FSKATTLDP-------TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP------------------------GCHLP- 382 (611)
T ss_pred HHHHhhcCc-------cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc------------------------CCcch-
Confidence 999987542 2256799999999999999999999887765310 00112
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCC
Q 044256 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241 (363)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (363)
+--+.--|.+.++.+.|.+.|.+.... .+.|+...+-+.-.....+.+.+|...|+..+.. .+......+
T Consensus 383 ---~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~-----ik~~~~e~~- 452 (611)
T KOG1173|consen 383 ---SLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEV-----IKSVLNEKI- 452 (611)
T ss_pred ---HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH-----hhhcccccc-
Confidence 222344577789999999999988776 2447777887777777789999999998876521 111111111
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHH
Q 044256 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 321 (363)
-...+++.|..+|.+.+.+++|+..+++..... +.+..++.++.-.|...|+++.|...|.+.... .|+..+...++
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL 529 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELL 529 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHH
Confidence 234578889999999999999999999998875 788999999999999999999999999998875 67777767666
Q ss_pred HHHH
Q 044256 322 HALG 325 (363)
Q Consensus 322 ~~~~ 325 (363)
..+.
T Consensus 530 ~~ai 533 (611)
T KOG1173|consen 530 KLAI 533 (611)
T ss_pred HHHH
Confidence 6443
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=8.2e-09 Score=86.54 Aligned_cols=343 Identities=11% Similarity=0.051 Sum_probs=202.0
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|.+....++..+ |.+..++..=+-++.+.+++++|+.+.+.-... ..+..-+-.-..+..+.+..++|+.
T Consensus 25 ~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred chHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHH
Confidence 478999999999999874 657888888888899999999999655442211 1111111122344557889999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------------------------
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------------------------- 135 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------------- 135 (363)
.++-.. +.+..+...-...+.+.|++++|+++|+.+.+.+.....
T Consensus 101 ~~~~~~----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 101 TLKGLD----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred HHhccc----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 888221 233446666677788999999999999998765433221
Q ss_pred -------------hhhccCChHHHHHHHHHHHHcC--------CC-----Cch-hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044256 136 -------------LLCKKTKLVEANRLLELMMQRG--------LN-----PVI-FTYTPLLNGYCLVGKVNVAIALFDSM 188 (363)
Q Consensus 136 -------------~~~~~~~~~~a~~~~~~~~~~~--------~~-----~~~-~~~~~li~~~~~~~~~~~a~~~~~~~ 188 (363)
.+...|++.+|+++++.....+ .. ... ..-..|.-.+-..|+.++|..++...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4456788888888887773211 00 000 01122334455678888888888777
Q ss_pred HHcCCCCcHh----HHHHHHHHHHhcCChh-HHHHHHHH------------HHHhhH-----------------------
Q 044256 189 ARKGFMPDVF----SYSVLINGYCKNFNVE-EAMNVSRE------------MILNGF----------------------- 228 (363)
Q Consensus 189 ~~~~~~~~~~----~~~~l~~~~~~~~~~~-~a~~~~~~------------~~~~~~----------------------- 228 (363)
..... +|.. .-|.|+..-....-++ .++..++. +.....
T Consensus 251 i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 76642 2221 1112221110000001 00000000 000000
Q ss_pred -------------------------------HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH--------H
Q 044256 229 -------------------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFP--------T 269 (363)
Q Consensus 229 -------------------------------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~ 269 (363)
..++...-+....-...+.-.+++.....|+++.|.+++. .
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 0111111111111123344455667778899999998888 4
Q ss_pred HHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC--CCCcc----HHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK--NLVAD----VVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 270 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
+.+.+.. +.+...++..+.+.++.+.|..++.+.... .-.+. ..++.-+...-.+.|+-++|.++++++.+.
T Consensus 410 ~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 410 ILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 4444433 345566777777777777777777666532 00112 223333444445789999999999999985
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 044256 344 GCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 344 g~~p~~~~~~~ll~~~~~ 361 (363)
-++|..+...++.+|++
T Consensus 488 -n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 488 -NPNDTDLLVQLVTAYAR 504 (652)
T ss_pred -CCchHHHHHHHHHHHHh
Confidence 47889999999999986
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.5e-09 Score=88.84 Aligned_cols=291 Identities=10% Similarity=-0.044 Sum_probs=203.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc-hhhH
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN-VFCY 103 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~ 103 (363)
.+....+-|.++|++++|++.|.+.+.. .|| +.-|.....+|...|+|+++.+.-....+ +.|+ +-.+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--------l~P~Y~KAl 186 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--------LNPDYVKAL 186 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--------cCcHHHHHH
Confidence 4555667788999999999999999986 688 66678888899999999999998888877 3454 4455
Q ss_pred HHHHHHHHhcCCHHHHHH----------------------HHHHH---------HHcC--CCcch----hh---------
Q 044256 104 GSLIDGLCKDRLVDQTKD----------------------LFMEM---------KDKG--INANT----LL--------- 137 (363)
Q Consensus 104 ~~ll~~~~~~~~~~~a~~----------------------~~~~~---------~~~~--~~~~~----~~--------- 137 (363)
..-.+++-..|++++|+. ++.+. .+.+ +.|+. .|
T Consensus 187 ~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 187 LRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 555566666666665532 22111 1001 11222 00
Q ss_pred --------------------hc---cCChHHHHHHHHHHHHc-CCCCchh-----------hHHHHHHHHHhcCCHHHHH
Q 044256 138 --------------------CK---KTKLVEANRLLELMMQR-GLNPVIF-----------TYTPLLNGYCLVGKVNVAI 182 (363)
Q Consensus 138 --------------------~~---~~~~~~a~~~~~~~~~~-~~~~~~~-----------~~~~li~~~~~~~~~~~a~ 182 (363)
.. ...+.+|...+.+-... ...++.. +...-...+.-.|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 00 01222222222221110 0111111 1111111223468888899
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 044256 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 262 (363)
.-|+..+.....++ ..|..+..+|....+.++....|.+....+ +.++.+|..-.+...-.+++++
T Consensus 347 ~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-------------p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-------------PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-------------CCCCchhHhHHHHHHHHHHHHH
Confidence 99998888743332 227777778999999999999888887665 3466788888888888899999
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 263 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
|..=|++.+... |.+...|..+..+..+.+.++++...|++.... ++.-+..|+.....+...++++.|.+.|+..++
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999999876 667888888888888999999999999999877 677789999999999999999999999999987
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=1.2e-09 Score=88.91 Aligned_cols=84 Identities=8% Similarity=-0.122 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHhcC-CCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcC
Q 044256 38 GNIRDASQLVKKMATFG-CRPN--VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR 114 (363)
Q Consensus 38 ~~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 114 (363)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCC
Confidence 44455555555555331 1111 1234455555555566666666666555543 334555555555666666
Q ss_pred CHHHHHHHHHHHHH
Q 044256 115 LVDQTKDLFMEMKD 128 (363)
Q Consensus 115 ~~~~a~~~~~~~~~ 128 (363)
+++.|...|++..+
T Consensus 113 ~~~~A~~~~~~Al~ 126 (296)
T PRK11189 113 NFDAAYEAFDSVLE 126 (296)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655554
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=4.2e-09 Score=90.70 Aligned_cols=280 Identities=14% Similarity=0.111 Sum_probs=192.4
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHH-HHHHHHh-----cCC
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT-LITGLRR-----TGN 74 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~-----~~~ 74 (363)
.|++++|++.++.-... -+............+.+.|+.++|..+|..+++.+ |+...|.. +..+..- ..+
T Consensus 17 ~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred CCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccccc
Confidence 48899999999887665 44256778888999999999999999999999985 56655544 4444422 225
Q ss_pred hhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCcch-----hhhccCChHHHHH
Q 044256 75 MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV-DQTKDLFMEMKDKGINANT-----LLCKKTKLVEANR 148 (363)
Q Consensus 75 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~ 148 (363)
.+....+|+++.+.- |.......+.-.+..-..+ ..+...+..+...|+++-- .+.......-...
T Consensus 93 ~~~~~~~y~~l~~~y--------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 93 VEKLLELYDELAEKY--------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred HHHHHHHHHHHHHhC--------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 677788888887643 3333333332223222223 2444556666777755432 3333333444444
Q ss_pred HHHHHHHc----C----------CCCch--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcC
Q 044256 149 LLELMMQR----G----------LNPVI--FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD-VFSYSVLINGYCKNF 211 (363)
Q Consensus 149 ~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 211 (363)
++...... + -+|+. .++..+...|-..|++++|..+++..+++ .|+ +..|..-.+.+-..|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 44444322 1 13443 34466677888999999999999999988 455 567888888999999
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHH--------HH
Q 044256 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI--------FN 283 (363)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~ 283 (363)
++.+|...++.....+ ..|...-+-....+.+.|++++|.+++....+.+..|-... ..
T Consensus 243 ~~~~Aa~~~~~Ar~LD-------------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-------------LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred CHHHHHHHHHHHHhCC-------------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 9999999998887765 24666666678888999999999999999987764332221 24
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhh
Q 044256 284 SLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 284 ~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
....+|.+.|++..|++.|..+.+
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456788899999999887766653
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=5.1e-09 Score=85.24 Aligned_cols=228 Identities=11% Similarity=-0.065 Sum_probs=136.1
Q ss_pred CChhHHHHHHHHHHhccCCCCCccCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHH
Q 044256 73 GNMNLTLKLHQEMVNGMGDFGGIYKP--NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLL 150 (363)
Q Consensus 73 ~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 150 (363)
+..+.++..+.+++.... ..| ....|..+...+...|+++.|...|++..+..
T Consensus 40 ~~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------------------- 94 (296)
T PRK11189 40 LQQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------------------- 94 (296)
T ss_pred hHHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------------------
Confidence 456667777777775431 122 24557777778888888888888888887642
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHH
Q 044256 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230 (363)
Q Consensus 151 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 230 (363)
+.+...|+.+...+...|+++.|...|+...+.. +-+..+|..+..++...|++++|.+.+++..+..
T Consensus 95 --------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--- 162 (296)
T PRK11189 95 --------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--- 162 (296)
T ss_pred --------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 2245677777777788888888888887777652 1234566666677777788888888877776553
Q ss_pred HHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC--
Q 044256 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-- 308 (363)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 308 (363)
|+..........+...+++++|.+.+.+..... .++...+ . ......|+...+ +.++.+.+.
T Consensus 163 -----------P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~ 226 (296)
T PRK11189 163 -----------PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGAT 226 (296)
T ss_pred -----------CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCC
Confidence 443222222222344567778887776654332 2222211 2 222234554443 233333321
Q ss_pred -CC---CccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 044256 309 -NL---VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354 (363)
Q Consensus 309 -~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 354 (363)
.. +.....|..+...+.+.|++++|...|++..+.+ +||.+.+..
T Consensus 227 ~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 227 DNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 10 1123567777777778888888888888877643 345555544
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-08 Score=81.43 Aligned_cols=303 Identities=14% Similarity=-0.016 Sum_probs=208.9
Q ss_pred CCCCchhhHHHHHHHHHh--cCCHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc
Q 044256 19 YRPLNDVTFNSLIKGFCM--EGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI 95 (363)
Q Consensus 19 ~~p~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 95 (363)
+.| +..+....+.+++. .++...|...+-.+... -++-|+.....+..++...|+.++|...|++....+
T Consensus 190 ~~~-~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d------ 262 (564)
T KOG1174|consen 190 VPD-HFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN------ 262 (564)
T ss_pred cCC-CccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC------
Confidence 344 44444445555544 34444444444333332 245667778889999999999999999999988743
Q ss_pred cCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C--Ccch----hhhccCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 044256 96 YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-I--NANT----LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPL 168 (363)
Q Consensus 96 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~--~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (363)
+-+........-.+.+.|+.+....+...+.... . .|.. .+...++++.|+.+-++.++.+ +.+...|-.-
T Consensus 263 -py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilK 340 (564)
T KOG1174|consen 263 -PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILK 340 (564)
T ss_pred -hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhc
Confidence 2334444444455677888888888777776543 1 1111 5567888999999999888775 3345556555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHH
Q 044256 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248 (363)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (363)
...+...+++++|.-.|+...... +-+..+|.-|+..|...|++.+|...-++..+.- +.+..+..
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-------------~~sA~~Lt 406 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-------------QNSARSLT 406 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-------------hcchhhhh
Confidence 677888999999999999877652 3477899999999999999999988877765432 23444554
Q ss_pred HHH-HHHHh-cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHc
Q 044256 249 IFI-DGLCK-NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326 (363)
Q Consensus 249 ~ll-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 326 (363)
.+. ..|.. ...-++|.+++++..+.. |.-....+.+...+...|..+.+..+++..... .||....+.+...+..
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A 483 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRA 483 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHH
Confidence 442 33332 223467888888777654 333456677778888888888888888888765 6788888888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH
Q 044256 327 EGQIKKENYLLLSMEENGCALDV 349 (363)
Q Consensus 327 ~g~~~~a~~~~~~m~~~g~~p~~ 349 (363)
.+.+++|.+.|...+. +.|+.
T Consensus 484 ~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 484 QNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred hhhHHHHHHHHHHHHh--cCccc
Confidence 8888888888888776 34443
No 74
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.1e-08 Score=81.60 Aligned_cols=343 Identities=15% Similarity=0.058 Sum_probs=230.3
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCChhHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-VTTCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 79 (363)
.|+++.|+..|...... .|.|...|..-..+|+..|++++|++=-.+-.+. .|+ ...|.-...++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHH
Confidence 48999999999999885 7768888999999999999999998877776655 566 347888888999999999999
Q ss_pred HHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcC-----------------C---------------------------
Q 044256 80 KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR-----------------L--------------------------- 115 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------------~--------------------------- 115 (363)
..|.+-.+.. +.|...++.+..++.-.. +
T Consensus 91 ~ay~~GL~~d-------~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 91 LAYSEGLEKD-------PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHhhcC-------CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999988864 445566666666552110 0
Q ss_pred ----HHHHHHHHHHHHHc--------C-------CCcch------------------------------hhhccCChHHH
Q 044256 116 ----VDQTKDLFMEMKDK--------G-------INANT------------------------------LLCKKTKLVEA 146 (363)
Q Consensus 116 ----~~~a~~~~~~~~~~--------~-------~~~~~------------------------------~~~~~~~~~~a 146 (363)
........-.+... + ..|.. ...+..++..|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 00000000000000 0 00000 23345566667
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH-------HHHHHHhcCChhHHHHH
Q 044256 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV-------LINGYCKNFNVEEAMNV 219 (363)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~ 219 (363)
.+.+....... -+..-++....+|...|.+..+...-....+.|.. ...-|+. +..+|.+.++++.++..
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 77777666654 34455566667777788777777666665555422 1122222 33356667888888888
Q ss_pred HHHHHHhhH-----------H-HHHHHhHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHH
Q 044256 220 SREMILNGF-----------K-KIFNEMKLCNVVPETF-TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286 (363)
Q Consensus 220 ~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 286 (363)
+.+.+.... + .+-......-+.|... -...-...+.+.|++..|+..|.++++.. |.|...|..-.
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRA 399 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRA 399 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence 887654331 0 1111111122233321 12222456778899999999999999887 88899999999
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
-+|.+.|.+..|++-.+...+.+ ++....|..=..++....+|++|.+.|++.++ +.|+..-+.--+.-|..
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHH
Confidence 99999999999999888888774 44556666666677778899999999999998 56887777666666654
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=4.4e-09 Score=77.88 Aligned_cols=184 Identities=11% Similarity=0.011 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHH
Q 044256 28 NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107 (363)
Q Consensus 28 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 107 (363)
..|.-.|...|++..|..-+++.++.. +-+..+|..+...|.+.|..+.|.+.|+...+.. +.+..+.|...
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~~GdVLNNYG 110 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------PNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------CCccchhhhhh
Confidence 334444444444444444444444432 1122344444444444444444444444444432 33344444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcch---------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 044256 108 DGLCKDRLVDQTKDLFMEMKDKGINANT---------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178 (363)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (363)
..+|..|++++|...|++.......+.. +..+.|+++.|...|++.++.. +-...+...+.....+.|++
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccc
Confidence 4444444444444444444443221111 2233444444444444444432 12233445555555666666
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHH
Q 044256 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221 (363)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (363)
-.|...++.....+. ++..+.-..|..-.+.|+.+.+.+.=.
T Consensus 190 ~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 190 APARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred hHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 666666666555543 555555555555555666555544433
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.26 E-value=1.3e-07 Score=80.47 Aligned_cols=340 Identities=11% Similarity=0.106 Sum_probs=184.4
Q ss_pred hhhhhHHHHHHHHHHcCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 79 (363)
|++......|++.+.. -|. ...+|...+......+-++-++++|++.++. .| ..-+--|..++..+++++|.
T Consensus 116 ~~iT~tR~tfdrALra--LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRA--LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred chHHHHHHHHHHHHHh--CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccchHHHH
Confidence 4455566677776654 231 4556777777777777777777777777753 23 23555566667777777777
Q ss_pred HHHHHHHhccCCCCC------------------------------------ccCCc--hhhHHHHHHHHHhcCCHHHHHH
Q 044256 80 KLHQEMVNGMGDFGG------------------------------------IYKPN--VFCYGSLIDGLCKDRLVDQTKD 121 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~------------------------------------~~~~~--~~~~~~ll~~~~~~~~~~~a~~ 121 (363)
+.+..........+. ..-+| -..|.+|...|.+.|++++|.+
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 766655433221000 01112 2368999999999999999999
Q ss_pred HHHHHHHcCCCcch------------------------------------------------------------------
Q 044256 122 LFMEMKDKGINANT------------------------------------------------------------------ 135 (363)
Q Consensus 122 ~~~~~~~~~~~~~~------------------------------------------------------------------ 135 (363)
+|++....-....+
T Consensus 270 vyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 270 VYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 99987765433222
Q ss_pred ------hhhccCChHHHHHHHHHHHHcCCCC------chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HhHH
Q 044256 136 ------LLCKKTKLVEANRLLELMMQRGLNP------VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD---VFSY 200 (363)
Q Consensus 136 ------~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 200 (363)
+-+..|+..+-...+.+..+. +.| -...|..+...|-..|+++.|..+|++..+-..+-- ..+|
T Consensus 350 ~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw 428 (835)
T KOG2047|consen 350 EEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVW 428 (835)
T ss_pred HHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHH
Confidence 111223333333333333322 111 123455566666677777777777776665432211 2344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhHH---HHHHHhH--hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 044256 201 SVLINGYCKNFNVEEAMNVSREMILNGFK---KIFNEMK--LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275 (363)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 275 (363)
......=.++.+++.|+.++++...-... ..++... +..+.-+...|...++.--..|-++....+|+.+.+..+
T Consensus 429 ~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 429 CAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 44444445566667776666655322110 0011000 000111233455555555566777777777777776653
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCcc-HHHHHHHHHHHHc---cCChhHHHHHHHHHHHcCCCCCHH
Q 044256 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD-VVAYNILIHALGK---EGQIKKENYLLLSMEENGCALDVD 350 (363)
Q Consensus 276 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ 350 (363)
. ++.+.......+-.+.-++++.+++++-...=..|+ ...|+..+.-+.+ ....+.|..+|++.++ |++|...
T Consensus 509 a-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 509 A-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred C-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 2 233333333334445556677777766555422333 2456665554432 2346677777777777 5555443
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.6e-07 Score=75.74 Aligned_cols=278 Identities=15% Similarity=0.057 Sum_probs=199.2
Q ss_pred hhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHH
Q 044256 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLKLHQ 83 (363)
Q Consensus 5 ~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 83 (363)
..|.+.+-.+......|.|+.....+.+++...|+.++|...|++.... .|+.. ......-.+.+.|+.++...+..
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMD 290 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHH
Confidence 3444444444444456778899999999999999999999999988754 33322 22222333457788888888877
Q ss_pred HHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHHHc
Q 044256 84 EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMMQR 156 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~ 156 (363)
.+.... .-+...|..-+......++++.|+.+-++.++.....-. .+...+++++|.-.|......
T Consensus 291 ~Lf~~~-------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 291 YLFAKV-------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHhhh-------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 777643 345555666666667778899999998888775433322 667888999999999887765
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHH-HHH-HhcCChhHHHHHHHHHHHhhHHHHHHH
Q 044256 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI-NGY-CKNFNVEEAMNVSREMILNGFKKIFNE 234 (363)
Q Consensus 157 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (363)
. |.+...|..|+..|...|.+.+|...-+..... ++.+..+...+. ..+ -...--++|..++++.++..
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~------- 434 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN------- 434 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-------
Confidence 3 456789999999999999999988777655443 233445554442 222 23344577877777665543
Q ss_pred hHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044256 235 MKLCNVVPE-TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 235 ~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
|+ ....+.+...|...|..+.++.++++.... .||....+.|.+.+...+.+.+|...|....+.+
T Consensus 435 -------P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 435 -------PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred -------CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 54 345667778888999999999999988765 6888899999999999999999999999988764
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=3.4e-08 Score=73.28 Aligned_cols=182 Identities=13% Similarity=0.005 Sum_probs=128.1
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++..|.+-++++++. .|.+..+|..+...|.+.|..+.|.+.|++..+.. +-+..+.|.....+|..|++++|.+
T Consensus 48 ~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 48 QGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred CCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHHHH
Confidence 36777778888888776 67667777778888888888888888888777663 3345567777777777778888888
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELM 153 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~ 153 (363)
.|++...... ..--..+|..+.-+..+.|+++.|...|++..+....-.. .....|++..|..+++..
T Consensus 125 ~F~~Al~~P~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 125 QFERALADPA-----YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHhCCC-----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 8887776431 2223567777777777788888888888877765443222 456677777787777777
Q ss_pred HHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191 (363)
Q Consensus 154 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (363)
...+. ++..+.-..|..-...|+.+.+-+.=..+...
T Consensus 200 ~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 200 QQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred Hhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77664 66666666677777777777777766565554
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=2.6e-07 Score=78.01 Aligned_cols=300 Identities=12% Similarity=-0.002 Sum_probs=170.4
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc---HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCcc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT---CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIY 96 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 96 (363)
.|..+..|..+...+...|+.+.+...+....+.. +++... .......+...|++++|...+++..+..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------- 73 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY------- 73 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------
Confidence 35455566666666666777777666666655432 222211 2222334456677777777777777643
Q ss_pred CCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcch---------hhhccCChHHHHHHHHHHHHcCCCCchh
Q 044256 97 KPNVFCYGSLIDGLCK----DRLVDQTKDLFMEMKDKGINANT---------LLCKKTKLVEANRLLELMMQRGLNPVIF 163 (363)
Q Consensus 97 ~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 163 (363)
+.+...+.. ...+.. .+....+.+.++. .....|.. .+...|++++|...+++..+.. +.+..
T Consensus 74 P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~ 149 (355)
T cd05804 74 PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAW 149 (355)
T ss_pred CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcH
Confidence 333333332 112222 3344444444433 11122222 3456777788888887777764 44567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcH--hHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCC
Q 044256 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGF-MPDV--FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240 (363)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 240 (363)
.+..+...+...|++++|..++++...... .|+. ..|..+...+...|++++|..++++..... ..
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----------~~ 218 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----------AE 218 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----------cC
Confidence 788888999999999999999998876532 2232 245567788899999999998888764221 00
Q ss_pred CCChHHH-H--HHHHHHHhcCCHHHHHHHHHHHHhc---cC--cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-
Q 044256 241 VPETFTC-N--IFIDGLCKNGHVLEVMELFPTLEIS---NC--ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV- 311 (363)
Q Consensus 241 ~~~~~~~-~--~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~- 311 (363)
.+..... + .++.-+...|....+.+. +.+... .. ............++...|+.+.|..+++.+......
T Consensus 219 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~ 297 (355)
T cd05804 219 SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSA 297 (355)
T ss_pred CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 1111111 1 223333334433333222 222111 10 111222235667788899999999999988753211
Q ss_pred -----ccHHHHHHHH--HHHHccCChhHHHHHHHHHHHc
Q 044256 312 -----ADVVAYNILI--HALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 312 -----~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
....+-..++ .++...|++++|.+.+......
T Consensus 298 ~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 298 DDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0111222233 3456899999999999988764
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.19 E-value=2.7e-07 Score=72.70 Aligned_cols=297 Identities=12% Similarity=0.001 Sum_probs=210.6
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHH---HHHHHhcCChhHHHHHHHHHHhccCCCC
Q 044256 17 RCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL---ITGLRRTGNMNLTLKLHQEMVNGMGDFG 93 (363)
Q Consensus 17 ~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 93 (363)
.+..|.++.----+...+..+|++.+|+.-|....+- |+..|.++ ...|...|+...|+.-++..++
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle------ 100 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE------ 100 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh------
Confidence 3445545666667788888899999999999888753 44444444 4567888999999999999888
Q ss_pred CccCCchhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCcch----------------------hhhccCChHHHHHHH
Q 044256 94 GIYKPNVFCYG-SLIDGLCKDRLVDQTKDLFMEMKDKGINANT----------------------LLCKKTKLVEANRLL 150 (363)
Q Consensus 94 ~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~a~~~~ 150 (363)
.+||...-. .-...+.+.|.++.|..-|+.+++....... .+...|+...|...+
T Consensus 101 --lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 101 --LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred --cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 567743322 2345678899999999999999887553332 445678888888888
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHH
Q 044256 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK 230 (363)
Q Consensus 151 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 230 (363)
..+++.. +-+...|..-..+|...|++..|+.=++..-+.. ..++.++-.+-..+...|+.+.++...++.++.+
T Consensus 179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--- 253 (504)
T KOG0624|consen 179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--- 253 (504)
T ss_pred HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC---
Confidence 8888764 4466677777888999999999988777665543 2355666666777888999999988888877655
Q ss_pred HHHHhHhcCCCCChHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHhccCcch---HHHHHHHHHHHHhcCC
Q 044256 231 IFNEMKLCNVVPETFT----CNIF---------IDGLCKNGHVLEVMELFPTLEISNCELF---VEIFNSLIRGCCKFGI 294 (363)
Q Consensus 231 ~~~~~~~~~~~~~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~ 294 (363)
||... |-.+ +......+++.++++-.+...+...... ...+..+-.++...++
T Consensus 254 -----------pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 254 -----------PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred -----------cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 33221 1111 1223455677777777777665532211 2234556667777888
Q ss_pred hHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
+.+|++...+++... +.|..++.--..+|.-...++.|+.-|+...+
T Consensus 323 ~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 999999888888763 34578888888888888889999988888877
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=9.8e-08 Score=75.46 Aligned_cols=142 Identities=10% Similarity=0.033 Sum_probs=79.7
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
.|+..|+.+++--...+-.. ...+---+..++...|++++|+..|..+.... .|+...+..|..++.-.|.+.+|.++
T Consensus 36 rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHH
Confidence 46778888887766543332 22233334566778899999999998877654 56777777777777778888888776
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCcchhhhccCChHHHHHHHHHHHHc
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK---GINANTLLCKKTKLVEANRLLELMMQR 156 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~ 156 (363)
-... +.++-.-..|+..-.+.++-++-..+-+.+.+. .+...+.....-.+++|.+++..+...
T Consensus 114 ~~ka-----------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 114 AEKA-----------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HhhC-----------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5433 222222233334444445544444433333221 111111233344555666666655544
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=1.8e-07 Score=79.03 Aligned_cols=289 Identities=11% Similarity=0.004 Sum_probs=167.8
Q ss_pred hhhhhHHHHHHHHHHcCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH----hcCChh
Q 044256 2 SKVLGALMAFGSFIRRCY-RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR----RTGNMN 76 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~----~~~~~~ 76 (363)
|+.+.+.+.+....+... .+............+...|++++|..++++..+.. +.+...+.. ...+. ..+..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~ 97 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRD 97 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCch
Confidence 455666666666655422 11112233334455678899999999999988763 333334442 22222 234555
Q ss_pred HHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHH
Q 044256 77 LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRL 149 (363)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~ 149 (363)
.+.+.++.... . .+........+...+...|++++|...+++..+..+.... ++...|++++|...
T Consensus 98 ~~~~~l~~~~~-~------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 98 HVARVLPLWAP-E------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred hHHHHHhccCc-C------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555544111 1 2233444556667888999999999999999886544322 66788999999999
Q ss_pred HHHHHHcCC-CCch--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHhHH-H--HHHHHHHhcCChhHHHHHHHH
Q 044256 150 LELMMQRGL-NPVI--FTYTPLLNGYCLVGKVNVAIALFDSMARKGF-MPDVFSY-S--VLINGYCKNFNVEEAMNVSRE 222 (363)
Q Consensus 150 ~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~~~~ 222 (363)
+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+... +.
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~ 249 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-ED 249 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HH
Confidence 998877542 1222 3455688889999999999999999864422 1122111 1 223333334443333221 11
Q ss_pred HHHhhHHHHHHHhHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCc------c--hHHHHHHHHHHHHhcC
Q 044256 223 MILNGFKKIFNEMKLCNV-VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE------L--FVEIFNSLIRGCCKFG 293 (363)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~li~~~~~~~ 293 (363)
+... -..... ............++...|+.+.|..++..+...... . ..........++...|
T Consensus 250 ~~~~--------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 250 LADY--------AAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred HHHH--------HHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 1110 000000 111122224566778889999999999988754322 1 1222233334456889
Q ss_pred ChHHHHHHHHHhhhC
Q 044256 294 IFEIASELFNKLSCK 308 (363)
Q Consensus 294 ~~~~a~~~~~~~~~~ 308 (363)
+.++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887753
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=1e-06 Score=76.65 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=117.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
++..|..+.-++...|+++.+.+.|++....- --..+.|+.+...+...|.-..|..+++.-..... -+++...
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-----~ps~~s~ 395 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-----QPSDISV 395 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-----CCCcchH
Confidence 78888888888899999999999998876542 33556788888888888888888888877665331 1223333
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHcC------CCcch------hh-----------hccCChHHHHHHHHHHHHcCC
Q 044256 103 YGSLIDGLC-KDRLVDQTKDLFMEMKDKG------INANT------LL-----------CKKTKLVEANRLLELMMQRGL 158 (363)
Q Consensus 103 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~~------~~~~~------~~-----------~~~~~~~~a~~~~~~~~~~~~ 158 (363)
+-..-..|. +.+..++++++-.+..+.. +.|-. .| .+.....++.+.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333333 3466667666666665521 11111 00 112233456666666666542
Q ss_pred -CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 044256 159 -NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224 (363)
Q Consensus 159 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (363)
.|+...| +.--|+-.++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2322222 333355567777777777777666545566677766666666677777766665543
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.08 E-value=2.7e-06 Score=72.71 Aligned_cols=214 Identities=13% Similarity=0.017 Sum_probs=155.8
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
+++...++..+.+++. .|...++.....-.+...|+-++|........+.. ..+...|+.+.-.+....++++|++.
T Consensus 21 kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 5666677777777775 55566777766666778899999999888877654 34677899988888888999999999
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHH
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMM 154 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~ 154 (363)
|..+...+ +.|...|.-+.-..++.|+++.......++.+..+.... +..-.|++..|..+++...
T Consensus 98 y~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 98 YRNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999865 677888888888888888888888887777765332222 4556889999999999887
Q ss_pred HcC-CCCchhhHHHHHH------HHHhcCCHHHHHHHHHHHHHcCCCCcHhHH-HHHHHHHHhcCChhHHHHHHHHHHHh
Q 044256 155 QRG-LNPVIFTYTPLLN------GYCLVGKVNVAIALFDSMARKGFMPDVFSY-SVLINGYCKNFNVEEAMNVSREMILN 226 (363)
Q Consensus 155 ~~~-~~~~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (363)
+.. ..|+...+..... .....|..+.|.+.+..-... ..|...+ ..-...+.+.++.++|..++..++..
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 765 3566655544432 344577888888777654443 2233333 23445677889999999999888766
Q ss_pred h
Q 044256 227 G 227 (363)
Q Consensus 227 ~ 227 (363)
.
T Consensus 249 n 249 (700)
T KOG1156|consen 249 N 249 (700)
T ss_pred C
Confidence 5
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.08 E-value=1.3e-08 Score=81.74 Aligned_cols=150 Identities=14% Similarity=0.081 Sum_probs=79.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHH
Q 044256 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249 (363)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (363)
..+...|+++.|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--------------eD-~~l~q 168 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--------------ED-SILTQ 168 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--------------CC-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------Cc-HHHHH
Confidence 3444556666666655431 244455555666666666666655555443221 22 23333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 044256 250 FIDGLCK----NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325 (363)
Q Consensus 250 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 325 (363)
+..++.. .+.+.+|..+|+++.+. +++++.+.+.+..++...|++++|.+++.+....+ +-++.+...++.+..
T Consensus 169 La~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 169 LAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHH
Confidence 4443332 22466666666665543 35566666666666666666666666666665543 335555555666555
Q ss_pred ccCCh-hHHHHHHHHHHH
Q 044256 326 KEGQI-KKENYLLLSMEE 342 (363)
Q Consensus 326 ~~g~~-~~a~~~~~~m~~ 342 (363)
..|+. +.+.+.+.++..
T Consensus 247 ~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HTT-TCHHHHHHHHHCHH
T ss_pred HhCCChhHHHHHHHHHHH
Confidence 56655 445556666554
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=7e-08 Score=74.47 Aligned_cols=188 Identities=14% Similarity=0.134 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHH-
Q 044256 27 FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS- 105 (363)
Q Consensus 27 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 105 (363)
+.+++..+.+..++.+|++++..-.++. +.+......|..+|.+..++..|-..|+++-. ..|...-|..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--------l~P~~~qYrlY 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--------LHPELEQYRLY 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hChHHHHHHHH
Confidence 5556666677777888888777766653 22566677777777777788888888887776 3454444442
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 044256 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178 (363)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (363)
-...+.+.+.+..|+++...|.+..--.+. ...+.+++..+..++++....+ +..+.+...-...+.|++
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 244556677777777777776553111111 3344555555555555543322 222333333334566777
Q ss_pred HHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH
Q 044256 179 NVAIALFDSMARK-GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228 (363)
Q Consensus 179 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (363)
+.|.+-|+...+- |.. ....|+..+. ..+.++++.|++...+++..|+
T Consensus 161 EaAvqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 7777777766554 333 3455655443 3355677777777777766664
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.06 E-value=1.6e-08 Score=81.17 Aligned_cols=244 Identities=11% Similarity=0.033 Sum_probs=147.0
Q ss_pred hhhhhHHHHHHHHHHcCCCC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRP-LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
|++..++.-.+ .... .| .+.....-+.+++...|+++.++ .++.... .|.......+...+...++-+.++.
T Consensus 15 G~Y~~~i~e~~-~~~~--~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 15 GNYQQCINEAS-LKSF--SPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp T-HHHHCHHHH-CHTS--TCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred hhHHHHHHHhh-ccCC--CchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 56666665444 2221 22 13444556677777777766543 3333322 4555555444444433234444444
Q ss_pred HHHHHHhccCCCCCccC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCC
Q 044256 81 LHQEMVNGMGDFGGIYK-PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLN 159 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (363)
-+++..... .. .+..........+...|++++|++++...
T Consensus 88 ~l~~~~~~~------~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------------------------------- 128 (290)
T PF04733_consen 88 ELKELLADQ------AGESNEIVQLLAATILFHEGDYEEALKLLHKG--------------------------------- 128 (290)
T ss_dssp HHHHCCCTS---------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---------------------------------
T ss_pred HHHHHHHhc------cccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---------------------------------
Confidence 444333322 12 22222223334555667777777665431
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHhhHHHHHHHh
Q 044256 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK----NFNVEEAMNVSREMILNGFKKIFNEM 235 (363)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (363)
.+.......+..|.+.++++.|.+.++.|.+. ..|. +..-+..++.. .+.+.+|..+|+++...
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--------- 196 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--------- 196 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---------
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---------
Confidence 23456667788999999999999999999876 3343 33334444432 34689998777776443
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCCh-HHHHHHHHHhhhC
Q 044256 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF-EIASELFNKLSCK 308 (363)
Q Consensus 236 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~ 308 (363)
..+++.+.+.+..++...|++++|.+++.+....+ +-++.+...++.+....|+. +.+.+.+.++...
T Consensus 197 ----~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 197 ----FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp ----S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 34788888999999999999999999999988765 66777888888888888887 7788899988865
No 88
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.05 E-value=4.5e-07 Score=83.70 Aligned_cols=227 Identities=12% Similarity=0.022 Sum_probs=108.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhcc
Q 044256 61 TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140 (363)
Q Consensus 61 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 140 (363)
.|-..|......++.+.|.++.+++...-...+ -.--..+|.++++.-...|.-+...++|++..+.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE--eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy----------- 1526 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFRE--EEEKLNIWIAYLNLENAYGTEESLKKVFERACQY----------- 1526 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch--hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-----------
Confidence 444445555555555555555555543311000 0011234555555444455555555555555432
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHH
Q 044256 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVS 220 (363)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (363)
-.....|..|...|.+.+..++|.++++.|.+. +.-....|...+..+.+.++.+.|..++
T Consensus 1527 ------------------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1527 ------------------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred ------------------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHH
Confidence 011234555555555555555555555555544 2234445555555555555555555555
Q ss_pred HHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHH
Q 044256 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE 300 (363)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 300 (363)
.++++.-+ + .-......-.++.-.+.|+.+.+..+|+...... |--...|+.+|+.-.++|+.+.++.
T Consensus 1588 ~rAL~~lP--------k---~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1588 KRALKSLP--------K---QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred HHHHhhcc--------h---hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHH
Confidence 55544320 0 0012233333444445566666666666555442 3344556666666666666666666
Q ss_pred HHHHhhhCCCCcc--HHHHHHHHHHHHccCChh
Q 044256 301 LFNKLSCKNLVAD--VVAYNILIHALGKEGQIK 331 (363)
Q Consensus 301 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 331 (363)
+|+++...++.|. -..|.-.+.-=-+.|+-.
T Consensus 1656 lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1656 LFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 6666665554433 223444443333344433
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=6.7e-08 Score=81.06 Aligned_cols=260 Identities=11% Similarity=0.005 Sum_probs=164.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhc
Q 044256 34 FCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113 (363)
Q Consensus 34 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 113 (363)
+.++|++.+|.-.|+...+.. +-+...|..|.......++-..|+..+++..+.. +.|....-.|.-.|...
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-------P~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-------PTNLEALMALAVSYTNE 366 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhh
Confidence 456777777777777766653 3356677777777777777777777777777754 44566666677777777
Q ss_pred CCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH-HHHcC
Q 044256 114 RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDS-MARKG 192 (363)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~ 192 (363)
|.-..|.+.++..+...++-.. .. ..+ ++...-.. ..+..........++|-+ ....+
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~--l~---------------~a~--~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~ 425 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVH--LV---------------SAG--ENEDFENT--KSFLDSSHLAHIQELFLEAARQLP 425 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchh--cc---------------ccC--ccccccCC--cCCCCHHHHHHHHHHHHHHHHhCC
Confidence 7777777777776554321110 00 000 00000000 111111222333444433 34455
Q ss_pred CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044256 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272 (363)
Q Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (363)
..+|+.....|--.|.-.|++++|++.|+.++... +.|..+||-|...++...+.++|+..|.+.++
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-------------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-------------PNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-------------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 45677777777777888899999998888887654 34567899999999988899999999999887
Q ss_pred ccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC---------CCccHHHHHHHHHHHHccCChhHHHHH
Q 044256 273 SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN---------LVADVVAYNILIHALGKEGQIKKENYL 336 (363)
Q Consensus 273 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~ 336 (363)
.. |--+.+.-.|..+|...|.+++|.+.|-.++... ..++...|.+|=.++.-.++.|-+.+.
T Consensus 493 Lq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 493 LQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 64 3335566677788899999999998887665331 112345677666666667776655443
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.3e-06 Score=67.68 Aligned_cols=278 Identities=15% Similarity=0.144 Sum_probs=185.3
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHH-HHHHHHhcCChhHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT-LITGLRRTGNMNLTLK 80 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 80 (363)
.++++|++++..-.++ .|.+......+..+|-...++..|-+.|+++... .|...-|.. -.+.+.+.+.+..|+.
T Consensus 24 ~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 24 ARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred hhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4678899999888887 5657888999999999999999999999999876 565554432 3455667889999999
Q ss_pred HHHHHHhccCCCCCccCCchhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---cch--hhhccCChHHHHHHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFC--YGSLIDGLCKDRLVDQTKDLFMEMKDKGIN---ANT--LLCKKTKLVEANRLLELM 153 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~--~~~~~~~~~~a~~~~~~~ 153 (363)
+...|... |+... ...-.......+++..+..++++....+-. .+. ...+.|+++.|.+-|...
T Consensus 100 V~~~~~D~---------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 100 VAFLLLDN---------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHhcCC---------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 98877642 22211 111122234578888888888887643211 111 567899999999999998
Q ss_pred HHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------cHh--------HHHHHHH-------
Q 044256 154 MQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP-------------DVF--------SYSVLIN------- 205 (363)
Q Consensus 154 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~l~~------- 205 (363)
.+.+--.....|+..+..| +.|+++.|.+...++.++|++. |.. .-+.++.
T Consensus 171 lqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred HhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 8764333456787666544 6799999999999998876531 211 1223333
Q ss_pred HHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHH
Q 044256 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSL 285 (363)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 285 (363)
.+.+.++++.|.+.+-.|.. +.....|++|...+.-.- ..+++....+-+.-+...+ |....||..+
T Consensus 250 Ieyq~~n~eAA~eaLtDmPP-----------RaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPP-----------RAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred hhhhcccHHHHHHHhhcCCC-----------cccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 34567777777655544432 222335666665543221 2345555555555555554 3446788888
Q ss_pred HHHHHhcCChHHHHHHHHHhh
Q 044256 286 IRGCCKFGIFEIASELFNKLS 306 (363)
Q Consensus 286 i~~~~~~~~~~~a~~~~~~~~ 306 (363)
+-.||+..-++.|-.++.+-.
T Consensus 317 LllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCc
Confidence 888999888888887776543
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=1.1e-06 Score=76.38 Aligned_cols=312 Identities=12% Similarity=-0.016 Sum_probs=192.1
Q ss_pred hhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 044256 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQ 83 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 83 (363)
..++++.+++..+. .|.|+.+...+.--|+..++.+.|.+...+..+.+-.-+...|..+.-++...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~--d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQF--DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 45778888888886 5556666566666678889999999999999988657788899999999999999999999999
Q ss_pred HHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHH--cCCCCc
Q 044256 84 EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ--RGLNPV 161 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~ 161 (363)
...+.. ..|......-+..-...++.++++.....+...--. .......++-....+....+.- ....-.
T Consensus 538 ~al~E~-------~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~-~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 538 AALEEF-------GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEA-EYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHh-------hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHh-hhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 887753 344444444444445567777777776666532000 0000001111111111111100 000111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--Cc------HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHH
Q 044256 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM--PD------VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233 (363)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 233 (363)
..++..+.......+........ +...... |+ ...|......+.+.+..++|.-.+.+..+..
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------ 680 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID------ 680 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------
Confidence 12222222211111100000000 1111111 12 1234455666777788888877777765443
Q ss_pred HhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHH--HHHHhhhCCCC
Q 044256 234 EMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASE--LFNKLSCKNLV 311 (363)
Q Consensus 234 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~--~~~~~~~~~~~ 311 (363)
+-....|......+...|...+|.+.|......+ |-++.+.+++..++.+.|+..-|.. ++..+.+.+ +
T Consensus 681 -------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p 751 (799)
T KOG4162|consen 681 -------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-P 751 (799)
T ss_pred -------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-C
Confidence 2344556655666777888888888888877765 5566778888888888888777777 888888876 5
Q ss_pred ccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 312 ADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 312 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.+...|..+...+-+.|+.+.|...|....+.
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 57888888888888888888888888877663
No 92
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=5.7e-07 Score=77.75 Aligned_cols=214 Identities=10% Similarity=-0.076 Sum_probs=110.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 044256 105 SLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184 (363)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 184 (363)
.+...+...|-...|..+|+++..-.. .-..|+..|+..+|..+..+..+. +|+...|..+.+..-...-+++|.++
T Consensus 403 ~laell~slGitksAl~I~Erlemw~~-vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEMWDP-VILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHHHHH-HHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHH
Confidence 344444455555555555544431100 000233333333333333333331 45555555555554444445555555
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 044256 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVM 264 (363)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 264 (363)
.+..-.+ .-..+.....+.++++++.+.++.-.+.. +.-..+|-.+..+..+.++++.|.
T Consensus 480 sn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-------------plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 480 SNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-------------PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-------------ccchhHHHhccHHHHHHhhhHHHH
Confidence 5443221 01111111223455555555554433322 122345555555666667777777
Q ss_pred HHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 265 ELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
+.|....... |-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++.+.
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 7776666543 4455667777777777777777777777776665 445666666666666777777777777766543
No 93
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.98 E-value=5.2e-06 Score=71.10 Aligned_cols=309 Identities=12% Similarity=0.119 Sum_probs=188.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 101 (363)
=+.+|-..+..+.++|++......|+..+.. .+......|...+......+-++-+..+|++..+. .| .
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--------~P--~ 170 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--------AP--E 170 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--------CH--H
Confidence 3567888888889999999999999987754 33334567888888888889999999999999873 34 3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch--------------hhhccCChHH---HHHHHHHHHHcCCCCc--h
Q 044256 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------------LLCKKTKLVE---ANRLLELMMQRGLNPV--I 162 (363)
Q Consensus 102 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~~~~~---a~~~~~~~~~~~~~~~--~ 162 (363)
.-+-.+..++..+++++|.+.+..........+. ...+..+.-. ...++...... -+| .
T Consensus 171 ~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g 248 (835)
T KOG2047|consen 171 AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLG 248 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHH
Confidence 4777888899999999999999887654221111 1111111111 11222222211 233 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc----------------CC------hhHHHHHH
Q 044256 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN----------------FN------VEEAMNVS 220 (363)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~------~~~a~~~~ 220 (363)
..|++|.+.|.+.|.+++|..+|++.... ..+..-|..+.++|++- ++ ++-...-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 57899999999999999999999987765 22333333333333221 11 11122223
Q ss_pred HHHHHhhH--------------------------------HHHHHHhHhcCCCC------ChHHHHHHHHHHHhcCCHHH
Q 044256 221 REMILNGF--------------------------------KKIFNEMKLCNVVP------ETFTCNIFIDGLCKNGHVLE 262 (363)
Q Consensus 221 ~~~~~~~~--------------------------------~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~ 262 (363)
+.+..... -..+.+..+ .+.| -...|..+...|-..|+++.
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~-~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK-TVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH-ccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 33322211 111111111 0111 12356677777888888888
Q ss_pred HHHHHHHHHhccCcch---HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC-----------Cc------cHHHHHHHHH
Q 044256 263 VMELFPTLEISNCELF---VEIFNSLIRGCCKFGIFEIASELFNKLSCKNL-----------VA------DVVAYNILIH 322 (363)
Q Consensus 263 a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~li~ 322 (363)
|..+|++..+.+.+-- ..+|..-...-.+..+++.|.++.+......- ++ +...|..+++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 8888888876653322 34555555555677778888887776653211 11 2334555555
Q ss_pred HHHccCChhHHHHHHHHHHHcCCC
Q 044256 323 ALGKEGQIKKENYLLLSMEENGCA 346 (363)
Q Consensus 323 ~~~~~g~~~~a~~~~~~m~~~g~~ 346 (363)
.--..|-++....+|+++++..+.
T Consensus 486 leEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcC
Confidence 555667777778888887776543
No 94
>PLN02789 farnesyltranstransferase
Probab=98.97 E-value=4.5e-06 Score=68.18 Aligned_cols=216 Identities=7% Similarity=-0.008 Sum_probs=144.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHhccCCCCCccCCchhhH
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG-NMNLTLKLHQEMVNGMGDFGGIYKPNVFCY 103 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (363)
.++..+-..+...++.++|+.+++++++.. +-+..+|+....++...+ ++++++..++.+.+.. +.+..+|
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-------pknyqaW 109 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-------PKNYQIW 109 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-------CcchHHh
Confidence 445555566677788899999999998763 234446776666777777 5789999999998865 5666778
Q ss_pred HHHHHHHHhcCCH--HHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHH
Q 044256 104 GSLIDGLCKDRLV--DQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181 (363)
Q Consensus 104 ~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (363)
+.....+.+.|.. ++++.+++++.+. + +-+..+|+...-++...|+++++
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~---------------------------d-pkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSL---------------------------D-AKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHh---------------------------C-cccHHHHHHHHHHHHHhhhHHHH
Confidence 7665555555542 4556666666543 2 34667888888888888999999
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhc---CCh----hHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHH
Q 044256 182 IALFDSMARKGFMPDVFSYSVLINGYCKN---FNV----EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254 (363)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 254 (363)
++.++++++.+.. +...|+.....+.+. |.. ++.+....+++... +-+...|+.+...+
T Consensus 162 L~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-------------P~N~SaW~Yl~~ll 227 (320)
T PLN02789 162 LEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-------------PRNESPWRYLRGLF 227 (320)
T ss_pred HHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-------------CCCcCHHHHHHHHH
Confidence 9999999887543 566676665555443 222 34444444444332 34566787777777
Q ss_pred Hhc----CCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHh
Q 044256 255 CKN----GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291 (363)
Q Consensus 255 ~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 291 (363)
... ++..+|...+.+....+ +.+......|+..|+.
T Consensus 228 ~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 228 KDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 663 34456777777766654 4556677777777764
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=7.9e-06 Score=69.24 Aligned_cols=326 Identities=14% Similarity=0.057 Sum_probs=190.3
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------------------
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCR------------------------- 56 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------------------------- 56 (363)
|..++|+..++ |..+.+..+...-...+-+.|++++|+++|+.+.+.+..
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 34556666555 445545667777778888999999999999998654321
Q ss_pred C--CcccHHHHH---HHHHhcCChhHHHHHHHHHHhccCC----C---CCccCCchh-hHHHHHHHHHhcCCHHHHHHHH
Q 044256 57 P--NVTTCDTLI---TGLRRTGNMNLTLKLHQEMVNGMGD----F---GGIYKPNVF-CYGSLIDGLCKDRLVDQTKDLF 123 (363)
Q Consensus 57 ~--~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~----~---~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~ 123 (363)
| ...+|..+. ..++..|++.+|+++++.....+.. - +..+.-... +-..|.-.+...|+.++|..+|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 0 122443333 3456789999999999988322110 0 000111111 2234455677889999999999
Q ss_pred HHHHHcCCCcch----------hhhccCChH--------------HHHHHHH-------------------------HHH
Q 044256 124 MEMKDKGINANT----------LLCKKTKLV--------------EANRLLE-------------------------LMM 154 (363)
Q Consensus 124 ~~~~~~~~~~~~----------~~~~~~~~~--------------~a~~~~~-------------------------~~~ 154 (363)
...++....... ++....++- .+...+. +..
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999887654332 000000000 0000000 000
Q ss_pred H--cCCCCc--hhhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH
Q 044256 155 Q--RGLNPV--IFTYTPLLNGYCL--VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228 (363)
Q Consensus 155 ~--~~~~~~--~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (363)
+ ...++. ...+.+++..+.+ ...+..+..++...-+....-+..+.-.++......|+++.|..++.....
T Consensus 328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~--- 404 (652)
T KOG2376|consen 328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE--- 404 (652)
T ss_pred HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---
Confidence 0 001111 2233444443332 224666777776666553222344555667777889999999998885441
Q ss_pred HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------cCcchHHHHHHHHHHHHhcCChHHHHHHH
Q 044256 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS------NCELFVEIFNSLIRGCCKFGIFEIASELF 302 (363)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 302 (363)
.....+.+.+..|. +..++...+.+.++.+.|..++.+.+.. +-..-..++..+...-.+.|+.++|..++
T Consensus 405 -~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 405 -SWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred -hhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 22233333344444 4556677777777777777777666533 10111223344444455779999999999
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHH
Q 044256 303 NKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340 (363)
Q Consensus 303 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 340 (363)
+++.+.. ++|..+...++.+|++. +++.|..+-+.+
T Consensus 482 eel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 482 EELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999874 77999999999999875 467777765443
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.94 E-value=1.9e-06 Score=79.73 Aligned_cols=211 Identities=15% Similarity=0.073 Sum_probs=127.1
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 044256 97 KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK-GINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175 (363)
Q Consensus 97 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (363)
|-+...|-..|......++.+.|.++.++.+.. ++... .--...|.++++.-..-
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe------------------------eEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE------------------------EEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh------------------------HHHHHHHHHHHhHHHhh
Confidence 344566667777777777777777777766653 11100 00123455556555556
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHH
Q 044256 176 GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255 (363)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 255 (363)
|.-+...++|+++.+. ...-..|..|...|.+.+.+++|.++++.|.+.- ......|...+..+.
T Consensus 1511 G~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-------------~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-------------GQTRKVWIMYADFLL 1575 (1710)
T ss_pred CcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-------------cchhhHHHHHHHHHh
Confidence 6666667777766654 1123456666667777777777777777766542 234456666666666
Q ss_pred hcCCHHHHHHHHHHHHhccCcc--hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHH
Q 044256 256 KNGHVLEVMELFPTLEISNCEL--FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333 (363)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 333 (363)
++.+-+.|..++.++.+.- |- ......-.+..-.+.|+.+++..+|+...... +.....|+.+|+.-.++|+.+.+
T Consensus 1576 ~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred cccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHH
Confidence 7666667777776665541 21 33444455555566677777777777666552 44566677777777777777777
Q ss_pred HHHHHHHHHcCCCCC
Q 044256 334 NYLLLSMEENGCALD 348 (363)
Q Consensus 334 ~~~~~~m~~~g~~p~ 348 (363)
..+|++....++.|-
T Consensus 1654 R~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1654 RDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHhcCCChh
Confidence 777777776655544
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.93 E-value=4.9e-07 Score=68.69 Aligned_cols=161 Identities=12% Similarity=0.066 Sum_probs=117.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHH
Q 044256 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248 (363)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (363)
+..|...|+++.+....+.+... . . .+...++.+++...++..++.+ +.+...|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~-~-------~~~~~~~~~~~i~~l~~~L~~~-------------P~~~~~w~ 77 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L-H-------QFASQQTPEAQLQALQDKIRAN-------------PQNSEQWA 77 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c-c-------cccCchhHHHHHHHHHHHHHHC-------------CCCHHHHH
Confidence 45678888888876554332221 1 0 1223556677776666666554 45677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHH-HhcCC--hHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 044256 249 IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC-CKFGI--FEIASELFNKLSCKNLVADVVAYNILIHALG 325 (363)
Q Consensus 249 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 325 (363)
.+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+.
T Consensus 78 ~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~ 155 (198)
T PRK10370 78 LLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAF 155 (198)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHH
Confidence 88899999999999999999998876 66788888888864 67777 599999999999875 447888888888999
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044256 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358 (363)
Q Consensus 326 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 358 (363)
..|++++|...|+++++. .+|+..- ..+|.+
T Consensus 156 ~~g~~~~Ai~~~~~aL~l-~~~~~~r-~~~i~~ 186 (198)
T PRK10370 156 MQADYAQAIELWQKVLDL-NSPRVNR-TQLVES 186 (198)
T ss_pred HcCCHHHHHHHHHHHHhh-CCCCccH-HHHHHH
Confidence 999999999999999885 3444443 333354
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=3e-07 Score=77.32 Aligned_cols=202 Identities=14% Similarity=-0.016 Sum_probs=152.3
Q ss_pred hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 044256 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215 (363)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (363)
.+.+.|+..+|.-.|+..++.+ |-+...|..|....+..++-..|+..+++..+.. +-+......|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4456677777777777777664 4456777777777777777777887777777763 2245556666666777777777
Q ss_pred HHHHHHHHHHhhH-----------------------------HHHHHH-hHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 044256 216 AMNVSREMILNGF-----------------------------KKIFNE-MKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265 (363)
Q Consensus 216 a~~~~~~~~~~~~-----------------------------~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 265 (363)
|+..+++-+...+ ..+|-+ ....+..+|+.+...|.-.|--.|.+++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 7777766644332 233333 3445545777788888888888999999999
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCcc-HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD-VVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.|+.+.... |-|..+||-|...++...+.++|+..|++.++. .|+ +.+...|.-+|...|.+++|.+.|-+.+.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999876 778899999999999999999999999999987 454 55666778889999999999998887654
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.92 E-value=1.6e-09 Score=55.77 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=20.3
Q ss_pred CCCccHHHHHHHHHHHHccCChhHHHHHHHHH
Q 044256 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSM 340 (363)
Q Consensus 309 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 340 (363)
|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666665
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=1.3e-05 Score=76.71 Aligned_cols=305 Identities=9% Similarity=-0.021 Sum_probs=192.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCc--ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCcc
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCR------PNV--TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIY 96 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 96 (363)
.........+...|++++|..++......--. +.. .....+...+...|++++|...++...... .
T Consensus 410 ~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------~ 483 (903)
T PRK04841 410 RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL------P 483 (903)
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------C
Confidence 33344555567789999999999887543101 111 112223345567899999999999887632 1
Q ss_pred CCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------------hhhccCChHHHHHHHHHHHHc---
Q 044256 97 KPN----VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------------LLCKKTKLVEANRLLELMMQR--- 156 (363)
Q Consensus 97 ~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~~~a~~~~~~~~~~--- 156 (363)
..+ ....+.+...+...|+++.|...+++.......... .+...|++++|...+++....
T Consensus 484 ~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 484 LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 111 234456667778899999999999888653211111 456789999999988876542
Q ss_pred -CCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC--cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH
Q 044256 157 -GLN--P-VIFTYTPLLNGYCLVGKVNVAIALFDSMARK--GFMP--DVFSYSVLINGYCKNFNVEEAMNVSREMILNGF 228 (363)
Q Consensus 157 -~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (363)
+.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+...|++++|...+.......
T Consensus 564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~- 642 (903)
T PRK04841 564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL- 642 (903)
T ss_pred hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-
Confidence 211 1 1233445556677789999999999876543 1112 23344445667778999999998887764321
Q ss_pred HHHHHHhHhcCCCCCh-HH-HHHHHHHHHhcCCHHHHHHHHHHHHhccCcch---HHHHHHHHHHHHhcCChHHHHHHHH
Q 044256 229 KKIFNEMKLCNVVPET-FT-CNIFIDGLCKNGHVLEVMELFPTLEISNCELF---VEIFNSLIRGCCKFGIFEIASELFN 303 (363)
Q Consensus 229 ~~~~~~~~~~~~~~~~-~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~ 303 (363)
.. .+..... .. ....+..+...|+.+.|...+........... ...+..+..++...|+.++|...++
T Consensus 643 ----~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 715 (903)
T PRK04841 643 ----GN---GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILE 715 (903)
T ss_pred ----hc---ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11 1111110 00 11122444567899999998877654321111 1124566777889999999999999
Q ss_pred HhhhC----CCCcc-HHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 304 KLSCK----NLVAD-VVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 304 ~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
+.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 716 ~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 716 ELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87653 32222 345566667888999999999999998875
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.91 E-value=1.4e-05 Score=63.37 Aligned_cols=287 Identities=8% Similarity=-0.004 Sum_probs=197.7
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc-HHHHHHHHHhcCChhHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT-CDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~ 79 (363)
+|++.+|+.-|..+.+. .|.+-.++..-...|...|+...|+.=+.+.++. +||-.. -..-...+.+.|.+++|.
T Consensus 51 ~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~ 126 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAE 126 (504)
T ss_pred hhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHH
Confidence 46788888888888875 6645555566667788999999999999998876 777432 223345678999999999
Q ss_pred HHHHHHHhccCCCCCc------cCCchhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch---------hhhccCC
Q 044256 80 KLHQEMVNGMGDFGGI------YKPNVFC--YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---------LLCKKTK 142 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~------~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~ 142 (363)
.-|+..++....-+.. ..+.... ....+..+.-.|+...|+.....+++. .|+. .+...|.
T Consensus 127 ~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 127 ADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCc
Confidence 9999999865211000 0111111 223345566789999999999999875 4443 6778899
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHH-------------HHHHh
Q 044256 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI-------------NGYCK 209 (363)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------------~~~~~ 209 (363)
+..|..-++...+.. ..++.++.-+-..+...|+.+.++...++..+. .||....-..- .....
T Consensus 205 ~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888776654 345566666777888899999999999988876 56654322111 11223
Q ss_pred cCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHH
Q 044256 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE---TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLI 286 (363)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 286 (363)
.++|.+++...+..++.. .... ...+..+-.++...+++.+|++...++.... +.|+.++..-.
T Consensus 282 ~~~~t~cle~ge~vlk~e------------p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRA 348 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNE------------PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRA 348 (504)
T ss_pred hhhHHHHHHHHHHHHhcC------------CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 444555544444433322 1111 2234445566777899999999999998764 55688888888
Q ss_pred HHHHhcCChHHHHHHHHHhhhCC
Q 044256 287 RGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
.+|.-..+++.|+.-|+...+.+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999888764
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=1.5e-07 Score=71.47 Aligned_cols=119 Identities=16% Similarity=0.101 Sum_probs=97.9
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH-HhcCC--hhHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL-RRTGN--MNLT 78 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 78 (363)
++.+++...++..++. .|.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 53 ~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 53 QTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4567778888888776 77789999999999999999999999999998874 34566777777764 56676 5899
Q ss_pred HHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044256 79 LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 130 (363)
.+++++..+.. +.+..++..+...+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999875 5577888889999999999999999999988753
No 103
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=6.3e-06 Score=67.38 Aligned_cols=203 Identities=11% Similarity=0.038 Sum_probs=137.7
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCh--hHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEG-NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM--NLT 78 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 78 (363)
++.++|+.+.+.+++. .|.+..+|+....++...| ++++++..++++.+.+ +.+..+|+....++.+.++. +++
T Consensus 51 e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 51 ERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 4567788888888876 7767788888888888888 6899999999999875 44566788776666666653 678
Q ss_pred HHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCC
Q 044256 79 LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL 158 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (363)
+.+++.+.+.. +.|..+|+....++.+.|+++++++.++++++.++..
T Consensus 128 l~~~~kal~~d-------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------------------------- 175 (320)
T PLN02789 128 LEFTRKILSLD-------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------------------------- 175 (320)
T ss_pred HHHHHHHHHhC-------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-------------------------
Confidence 99999999875 6788999999999999999999999999998865432
Q ss_pred CCchhhHHHHHHHHHhc---CC----HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc----CChhHHHHHHHHHHHhh
Q 044256 159 NPVIFTYTPLLNGYCLV---GK----VNVAIALFDSMARKGFMPDVFSYSVLINGYCKN----FNVEEAMNVSREMILNG 227 (363)
Q Consensus 159 ~~~~~~~~~li~~~~~~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~ 227 (363)
...|+.....+.+. |. .+.......+++... +-+...|+.+...+... +...+|...+.+....+
T Consensus 176 ---~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 176 ---NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred ---hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 33444433333332 21 234555555555542 33566777776666652 33345555544433221
Q ss_pred HHHHHHHhHhcCCCCChHHHHHHHHHHHh
Q 044256 228 FKKIFNEMKLCNVVPETFTCNIFIDGLCK 256 (363)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 256 (363)
+.+......|++.|+.
T Consensus 252 -------------~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 252 -------------SNHVFALSDLLDLLCE 267 (320)
T ss_pred -------------CCcHHHHHHHHHHHHh
Confidence 2345566667777664
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=6.6e-07 Score=70.72 Aligned_cols=166 Identities=17% Similarity=0.012 Sum_probs=123.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-H---hHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhH
Q 044256 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD-V---FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236 (363)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (363)
....+..+...+...|+++.|...|+++.... |+ . ..+..+..++.+.|++++|...++++.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--------- 100 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--------- 100 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---------
Confidence 45567778888899999999999999987763 32 2 456777888999999999999988887654
Q ss_pred hcCCCCChH----HHHHHHHHHHhc--------CCHHHHHHHHHHHHhccCcchHHHH-----------------HHHHH
Q 044256 237 LCNVVPETF----TCNIFIDGLCKN--------GHVLEVMELFPTLEISNCELFVEIF-----------------NSLIR 287 (363)
Q Consensus 237 ~~~~~~~~~----~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~ 287 (363)
|+.. ++..+..++... |+.++|.+.++.+.... +-+...+ ..+..
T Consensus 101 -----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 174 (235)
T TIGR03302 101 -----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVAR 174 (235)
T ss_pred -----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 344444455443 77899999999988763 2222222 13456
Q ss_pred HHHhcCChHHHHHHHHHhhhCC--CCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 288 GCCKFGIFEIASELFNKLSCKN--LVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.|.+.|++.+|...++...... -+.....+..+..++.+.|++++|..+++.+...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6788999999999999998762 1224678889999999999999999999988764
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=3e-09 Score=54.70 Aligned_cols=32 Identities=47% Similarity=0.981 Sum_probs=20.5
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044256 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSM 188 (363)
Q Consensus 157 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 188 (363)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666655
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=1.1e-06 Score=69.58 Aligned_cols=184 Identities=11% Similarity=0.030 Sum_probs=129.4
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccC
Q 044256 22 LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV----TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97 (363)
Q Consensus 22 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 97 (363)
..+..+..+...+...|++++|...|+++... .|+. .++..+..++...|++++|...++.+.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p 101 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-------P 101 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------c
Confidence 36778888999999999999999999999876 3432 366778889999999999999999999854 2
Q ss_pred Cchh---hHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHH
Q 044256 98 PNVF---CYGSLIDGLCKD--------RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYT 166 (363)
Q Consensus 98 ~~~~---~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (363)
.+.. ++..+..++... |+.+.|.+.++.+.+..+.... ...+...+..+... ......
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~a~~~~~~~~~~----~~~~~~ 170 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY-------APDAKKRMDYLRNR----LAGKEL 170 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh-------HHHHHHHHHHHHHH----HHHHHH
Confidence 2222 455555556554 6788889998888875433211 11111111111100 001122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044256 167 PLLNGYCLVGKVNVAIALFDSMARKGF--MPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225 (363)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (363)
.+...+.+.|+++.|...++...+... +.....+..+..++...|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456778899999999999999887621 22356788899999999999999988777654
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.85 E-value=1.8e-07 Score=67.24 Aligned_cols=105 Identities=8% Similarity=-0.049 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 325 (363)
.+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|+.....+ +.+...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 35556778889999999999999999886 7788999999999999999999999999999875 568899999999999
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 044256 326 KEGQIKKENYLLLSMEENGCALDVDTFNT 354 (363)
Q Consensus 326 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 354 (363)
..|++++|...|+..++ +.|+...+..
T Consensus 104 ~~g~~~eAi~~~~~Al~--~~p~~~~~~~ 130 (144)
T PRK15359 104 MMGEPGLAREAFQTAIK--MSYADASWSE 130 (144)
T ss_pred HcCCHHHHHHHHHHHHH--hCCCChHHHH
Confidence 99999999999999998 5676555443
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.83 E-value=6.4e-06 Score=75.22 Aligned_cols=67 Identities=10% Similarity=-0.054 Sum_probs=49.1
Q ss_pred HHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHH
Q 044256 13 SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 13 ~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~ 81 (363)
+..-.+..|.+...|..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+.+..+
T Consensus 20 r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv 87 (906)
T PRK14720 20 RADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL 87 (906)
T ss_pred hcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh
Confidence 34445567878999999999999999999999999977766 55544 344444466677776666555
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=4.1e-07 Score=65.35 Aligned_cols=109 Identities=7% Similarity=-0.164 Sum_probs=93.4
Q ss_pred HHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044256 8 LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87 (363)
Q Consensus 8 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 87 (363)
..+|+...+. .| ..+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+....
T Consensus 13 ~~~~~~al~~--~p---~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DP---ETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3566777765 45 346677888999999999999999998875 45777889999999999999999999999998
Q ss_pred ccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 88 GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
.. +.+...+..+..++...|++++|...|+...+.
T Consensus 87 l~-------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 87 LD-------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred cC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 65 668899999999999999999999999998875
No 110
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.81 E-value=8.6e-05 Score=66.29 Aligned_cols=178 Identities=16% Similarity=0.220 Sum_probs=113.3
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKG--FCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 79 (363)
+++..|.+..+.+.+. .| + ..|..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|.
T Consensus 23 ~qfkkal~~~~kllkk--~P-n-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKK--HP-N-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHHH--CC-C-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 5778888888888876 55 3 223334444 36788888888888877665433 6778888888888889999999
Q ss_pred HHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--------------cch------
Q 044256 80 KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK----GIN--------------ANT------ 135 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--------------~~~------ 135 (363)
.+|++..+. -|+......+..+|+|.+++.+-.++--++-+. ... |+.
T Consensus 98 ~~Ye~~~~~--------~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 98 HLYERANQK--------YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHHhh--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 999988874 466666666777777776665433332222221 100 000
Q ss_pred -----------------------------hhhccCChHHHHHHHHH-HHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 044256 136 -----------------------------LLCKKTKLVEANRLLEL-MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185 (363)
Q Consensus 136 -----------------------------~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 185 (363)
++...+.+++|..++.. ..+.-.+.+...-+.-+..+...+++.+..++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 33456667777776632 222222333334445567777788888888888
Q ss_pred HHHHHcC
Q 044256 186 DSMARKG 192 (363)
Q Consensus 186 ~~~~~~~ 192 (363)
.++...|
T Consensus 250 ~~Ll~k~ 256 (932)
T KOG2053|consen 250 SRLLEKG 256 (932)
T ss_pred HHHHHhC
Confidence 8887775
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=4e-05 Score=73.34 Aligned_cols=302 Identities=10% Similarity=-0.057 Sum_probs=181.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc--hhhHHHHHHHHH
Q 044256 34 FCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN--VFCYGSLIDGLC 111 (363)
Q Consensus 34 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 111 (363)
+...|++..+..+++.+.......+..........+...|+++++...+......-...+....+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445566666666665542211112222333445556678899999999988765321000000111 122223344566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcch------------hhhccCChHHHHHHHHHHHHcCC---CC--chhhHHHHHHHHHh
Q 044256 112 KDRLVDQTKDLFMEMKDKGINANT------------LLCKKTKLVEANRLLELMMQRGL---NP--VIFTYTPLLNGYCL 174 (363)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~ 174 (363)
..|+++.|...+++........+. .+...|++++|...+.......- .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 889999999999998763221111 44578999999999888764311 11 12345566777888
Q ss_pred cCCHHHHHHHHHHHHHc----CCC--C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHH
Q 044256 175 VGKVNVAIALFDSMARK----GFM--P-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247 (363)
Q Consensus 175 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (363)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... . ..+.......+
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-----~---~~~~~~~~~~~ 615 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL-----S---NYQPQQQLQCL 615 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh-----h---ccCchHHHHHH
Confidence 99999999998876543 211 1 22334455556777899999998887765321 1 11111123345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc--CcchHH--H--HHHHHHHHHhcCChHHHHHHHHHhhhCCCCcc---HHHHH
Q 044256 248 NIFIDGLCKNGHVLEVMELFPTLEISN--CELFVE--I--FNSLIRGCCKFGIFEIASELFNKLSCKNLVAD---VVAYN 318 (363)
Q Consensus 248 ~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 318 (363)
..+...+...|+.+.|.+.+....... ...... . ....+..+...|+.+.|.+.+........... ...+.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 556677888999999999998875431 111110 1 11122445568999999999877654321111 11234
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHc
Q 044256 319 ILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 319 ~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.+..++...|++++|...+++....
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667788899999999999988764
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=2.4e-06 Score=65.06 Aligned_cols=161 Identities=17% Similarity=0.071 Sum_probs=123.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChH
Q 044256 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245 (363)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (363)
..+-..+...|+-+....+....... .+.|............+.|++..|+..+++..... ++|..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------------p~d~~ 135 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------------PTDWE 135 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------------CCChh
Confidence 44556666777777777776664433 23355566668888888999999988888876654 57888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 325 (363)
+|+.+.-+|.+.|+++.|..-|.+..+.. +-++..++.+...+.-.|+++.|..++......+ .-|...-..+.....
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~ 213 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVG 213 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHh
Confidence 89998889999999999999998888774 5567778888888888899999999988887764 336777777888888
Q ss_pred ccCChhHHHHHHHHHHH
Q 044256 326 KEGQIKKENYLLLSMEE 342 (363)
Q Consensus 326 ~~g~~~~a~~~~~~m~~ 342 (363)
..|++++|..+...-..
T Consensus 214 ~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 214 LQGDFREAEDIAVQELL 230 (257)
T ss_pred hcCChHHHHhhcccccc
Confidence 89999998887655443
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=9.6e-07 Score=73.01 Aligned_cols=134 Identities=14% Similarity=0.041 Sum_probs=116.9
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCChhHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-VTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
|++++|++.++.+... .|.|+..+....+.+.+.++..+|.+.++++... .|+ ...+-.+..++.+.|++++|+.
T Consensus 320 ~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 320 GQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 6789999999999887 8878999999999999999999999999999987 566 4456678899999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHc
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQR 156 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 156 (363)
+++...... +.|+..|..|.++|...|+..++.....+... ..|+++.|...+....+.
T Consensus 396 ~L~~~~~~~-------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~----------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFND-------PEDPNGWDLLAQAYAELGNRAEALLARAEGYA----------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcC-------CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHh
Confidence 999998875 78899999999999999999999988887653 477888888888777665
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=1.5e-06 Score=75.20 Aligned_cols=236 Identities=14% Similarity=0.082 Sum_probs=167.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
--..-..+...+...|-...|+.+|+++.. |..+|.+|...|+..+|..+..+-.+ -+||+..
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--------k~~d~~l 459 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--------KDPDPRL 459 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--------CCCcchh
Confidence 444555677888889999999999988753 66788899999999999999888887 2789999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKG-INANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (363)
|..+.+.....--+++|.++.+...... ........+.++++++.+.|+.-.+.. +....+|..+.-+..+.++++.|
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 9999988888888899999888765431 111112344678888888887766654 34456777777777788888888
Q ss_pred HHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCH
Q 044256 182 IALFDSMARKGFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260 (363)
Q Consensus 182 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 260 (363)
.+.|...... .| +...||.+-.+|.+.++-.+|...+.+..+-. .-+...|...+....+.|.+
T Consensus 539 v~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-------------~~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 539 VKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-------------YQHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred HHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-------------CCCCeeeechhhhhhhcccH
Confidence 8888777665 34 44578888888888888888877766665432 23445666667777788888
Q ss_pred HHHHHHHHHHHhccC-cchHHHHHHHHHHHHh
Q 044256 261 LEVMELFPTLEISNC-ELFVEIFNSLIRGCCK 291 (363)
Q Consensus 261 ~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~ 291 (363)
++|++.+..+..... ..|..+...++....+
T Consensus 604 eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 604 EDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 888888877754421 1244455555544443
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=1.4e-05 Score=72.07 Aligned_cols=231 Identities=8% Similarity=0.091 Sum_probs=159.8
Q ss_pred chhhHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHH--cCCCCchhhHHHHHHHHHhc
Q 044256 99 NVFCYGSLIDGLCKDRLVDQT-KDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ--RGLNPVIFTYTPLLNGYCLV 175 (363)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~ 175 (363)
++.....+=.+.+.-|..++| .+++.+..+ ++...+....+...+-++.. ...+.+...+..|.....+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~ 99 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ-------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAA 99 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH-------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHc
Confidence 344455555566777777666 345555443 22233334443333333322 23456678888899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC-hHHHHHHHHH
Q 044256 176 GKVNVAIALFDSMARKGFMPD-VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE-TFTCNIFIDG 253 (363)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~ 253 (363)
|..++|+.+++...+. .|+ ......+...+.+.+++++|+...++..... |+ ......+..+
T Consensus 100 g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------------p~~~~~~~~~a~~ 163 (694)
T PRK15179 100 HRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--------------SSSAREILLEAKS 163 (694)
T ss_pred CCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--------------CCCHHHHHHHHHH
Confidence 9999999999999887 454 4566778888999999999998888887765 54 4556677778
Q ss_pred HHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHH
Q 044256 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333 (363)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 333 (363)
+...|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.. .+....|+.++. +...-
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~ 235 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNAD 235 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHH
Confidence 889999999999999999843 5568899999999999999999999999998763 455666665543 23334
Q ss_pred HHHHHHHHHc----CCCCCHHHHHHHHHHHh
Q 044256 334 NYLLLSMEEN----GCALDVDTFNTLMISFL 360 (363)
Q Consensus 334 ~~~~~~m~~~----g~~p~~~~~~~ll~~~~ 360 (363)
...++++.-. |.......+...|.-|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 236 LAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 5556665433 34445555555555543
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.76 E-value=5.4e-07 Score=64.39 Aligned_cols=112 Identities=15% Similarity=0.081 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 323 (363)
......+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...++.....+ +.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3455667778889999999999999998876 6688899999999999999999999999998875 5578888888899
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044256 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359 (363)
Q Consensus 324 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 359 (363)
+...|++++|...|++..+ +.|+...+..+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE--ICGENPEYSELKERA 128 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH--hccccchHHHHHHHH
Confidence 9999999999999999998 567777766555443
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=9.6e-07 Score=67.14 Aligned_cols=165 Identities=12% Similarity=0.015 Sum_probs=121.4
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|.|..+ ..+-..+...|+-+....+........ +.|....+.++....+.|++..|...+++..... ++|
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------p~d 133 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------PTD 133 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------CCC
Confidence 6656666 667777888888888888877755431 3344556668888899999999999999998865 788
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 044256 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179 (363)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 179 (363)
...|+.+.-+|.+.|+++.|..-|.+..+..+ -+...++.+.-.+.-.|+.+
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~----------------------------~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELAP----------------------------NEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhcc----------------------------CCchhhhhHHHHHHHcCCHH
Confidence 99999999999999999999999999887422 23345666666666777777
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 044256 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222 (363)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (363)
.|..++......+. -|...-..+.......|++++|..+...
T Consensus 186 ~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 186 DAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 77777777666532 2555666666667777777777766544
No 118
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=0.00011 Score=61.99 Aligned_cols=299 Identities=12% Similarity=0.036 Sum_probs=194.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc-hhhHHHHHHH
Q 044256 31 IKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN-VFCYGSLIDG 109 (363)
Q Consensus 31 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~ 109 (363)
..+....|+++.|+..|.+.+... ++|...|..-..+|.+.|++++|++=-.+.++ +.|+ ...|+....+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--------l~p~w~kgy~r~Gaa 79 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--------LNPDWAKGYSRKGAA 79 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--------cCCchhhHHHHhHHH
Confidence 345677899999999999988775 55888899999999999999999988877777 4565 5679999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcch------------------------------------------------------
Q 044256 110 LCKDRLVDQTKDLFMEMKDKGINANT------------------------------------------------------ 135 (363)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~------------------------------------------------------ 135 (363)
+.-.|++++|+..|.+-++....-..
T Consensus 80 ~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 80 LFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999999999887664322111
Q ss_pred ----hhhccCChHHHHHHHHHHH-----HcC-------CCC---------c-------------hhhHHHHHHHHHhcCC
Q 044256 136 ----LLCKKTKLVEANRLLELMM-----QRG-------LNP---------V-------------IFTYTPLLNGYCLVGK 177 (363)
Q Consensus 136 ----~~~~~~~~~~a~~~~~~~~-----~~~-------~~~---------~-------------~~~~~~li~~~~~~~~ 177 (363)
.+........+...+.... ..+ ..| . ..-...+.++.-+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 0000001111111111000 000 001 0 0112334555556667
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhc
Q 044256 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257 (363)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 257 (363)
++.+++.+....+.. -+..-++....+|...|.+..+...-....+.|.+...+.-. =...+..+..+|.+.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl------Iak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL------IAKALARLGNAYTKR 311 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH------HHHHHHHhhhhhhhH
Confidence 777777777766653 344445556667777777777776666655554211100000 011222244466667
Q ss_pred CCHHHHHHHHHHHHhccCcchHHHH-------------------------HHHHHHHHhcCChHHHHHHHHHhhhCCCCc
Q 044256 258 GHVLEVMELFPTLEISNCELFVEIF-------------------------NSLIRGCCKFGIFEIASELFNKLSCKNLVA 312 (363)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 312 (363)
++++.++..|.+.......|+...- ..=...+.+.|++..|.+.|.+++... +-
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 7888888888876654434432221 112345678899999999999999886 66
Q ss_pred cHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 044256 313 DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349 (363)
Q Consensus 313 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 349 (363)
|...|....-+|.+.|.+..|++-.+..++ +.|+.
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~ 425 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNF 425 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchH
Confidence 899999999999999999999998888887 35554
No 119
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=2.7e-05 Score=68.93 Aligned_cols=54 Identities=20% Similarity=0.068 Sum_probs=30.1
Q ss_pred HHHHHhcCChHHHHHHHHH--------hhh--CCCCccHHHHHHHHHHHHccCChhHHHHHHHH
Q 044256 286 IRGCCKFGIFEIASELFNK--------LSC--KNLVADVVAYNILIHALGKEGQIKKENYLLLS 339 (363)
Q Consensus 286 i~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 339 (363)
+..|-++|.+.+|+++--+ ++. .....|+...+.-...++...++++|..++-.
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456677777777664211 111 12234566666666666677777776665443
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=3.5e-05 Score=70.56 Aligned_cols=242 Identities=10% Similarity=0.066 Sum_probs=159.9
Q ss_pred CCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044256 54 GCRP-NVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132 (363)
Q Consensus 54 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 132 (363)
++.| +...+..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++.+.+..+ .+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--- 92 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL--NLIDS--- 92 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh--hhhhh---
Confidence 3444 35578899999999999999999999887743 33344555555577788887777766 43332
Q ss_pred cchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 044256 133 ANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN 212 (363)
Q Consensus 133 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 212 (363)
.....++.-...+...+... .-+...+..+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|... +
T Consensus 93 ----~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 93 ----FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ----cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 22334554445555555554 3455688889999999999999999999999986 44788899999989888 9
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHh
Q 044256 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-NCELFVEIFNSLIRGCCK 291 (363)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 291 (363)
.++|..++.+.+.... .......=...|.-++. ....+++.-..+.+.+... +..--..++-.+-..|..
T Consensus 165 L~KA~~m~~KAV~~~i-------~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 165 KEKAITYLKKAIYRFI-------KKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred HHHHHHHHHHHHHHHH-------hhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence 9999988877654321 00000000011111111 1123344444455554433 333344556666677888
Q ss_pred cCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 044256 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325 (363)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 325 (363)
..+++++..+++.+.+.. +.|.....-++.+|.
T Consensus 236 ~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 236 LEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 889999999999999875 446777777787776
No 121
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=6e-05 Score=60.21 Aligned_cols=320 Identities=10% Similarity=0.065 Sum_probs=181.6
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----------C-CCcc---cH-----
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGC----------R-PNVT---TC----- 62 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------~-~~~~---~~----- 62 (363)
|++++|...+..+.+. -.| +...+..|.-++.-.|.+.+|..+-.+..+..+ + .|.. ++
T Consensus 71 gdY~~Al~~Y~~~~~~-~~~-~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq 148 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNK-DDA-PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ 148 (557)
T ss_pred ccHHHHHHHHHHHhcc-CCC-CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence 7899999999988875 345 677787787777778888888776655432100 0 0111 11
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCcch
Q 044256 63 ------DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS-LIDGLCKDRLVDQTKDLFMEMKDKGINANT 135 (363)
Q Consensus 63 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 135 (363)
-+|.+.....-.+++|+++|.+..... |+-...|. +.-+|.+..-++-+.++++-..+.-+....
T Consensus 149 D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--------~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 149 DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--------PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--------hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 112222222235678888888877643 44444443 333455555566666666555443221111
Q ss_pred -------------------------------------------------------------------------hhhccCC
Q 044256 136 -------------------------------------------------------------------------LLCKKTK 142 (363)
Q Consensus 136 -------------------------------------------------------------------------~~~~~~~ 142 (363)
.+.+.++
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND 300 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc
Confidence 3456777
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCcHh-HHHHHHHHHHhcCChhHH
Q 044256 143 LVEANRLLELMMQRGLNPVIFTYTPLLNG-----YCLVGKVNVAIALFDSMARKGFMPDVF-SYSVLINGYCKNFNVEEA 216 (363)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a 216 (363)
..+|..+.+.+... .|-......+..+ ........-|.+.|+-.-+++..-|+. --.++..++.-..++++.
T Consensus 301 VqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddV 378 (557)
T KOG3785|consen 301 VQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDV 378 (557)
T ss_pred HHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHH
Confidence 77777776554321 2222222222222 222345667788887776665544433 233444555556677887
Q ss_pred HHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHH-HHHHHHHHhcCCh
Q 044256 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF-NSLIRGCCKFGIF 295 (363)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~ 295 (363)
+-.+..+..-- ...|...+ .+.++++..|++.+|+++|-.+....++ |..+| ..|.++|.+++.+
T Consensus 379 l~YlnSi~sYF------------~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 379 LTYLNSIESYF------------TNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHh------------cCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCc
Confidence 76665553321 12233333 4678888888888888888777655444 34444 4556778888888
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHH-HHHHHccCChhHHHHHHHHHHHcCCCCCHHHH
Q 044256 296 EIASELFNKLSCKNLVADVVAYNIL-IHALGKEGQIKKENYLLLSMEENGCALDVDTF 352 (363)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 352 (363)
+.|+.++-.+... .+..+...+ ..-|.+.+.+--|-+.|+.+.. ..|+...|
T Consensus 445 ~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 445 QLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred hHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 8887776655432 233333333 3466777777777777777765 45665544
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=9.5e-07 Score=63.12 Aligned_cols=111 Identities=8% Similarity=-0.056 Sum_probs=94.0
Q ss_pred HHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 10 AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
.|+.+.+. .|.+......+...+...|++++|.+.|+.+...+ +.+...|..+..++...|++++|...++......
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666664 66566778888899999999999999999998865 4467788889999999999999999999998864
Q ss_pred CCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044256 90 GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130 (363)
Q Consensus 90 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 130 (363)
+.+...+..+..++...|+++.|...|+...+..
T Consensus 82 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 -------PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5677888888999999999999999999988753
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.62 E-value=0.00023 Score=60.20 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL-FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 323 (363)
-+|..++..-.+...+..|..+|.++.+.+..+ ++.++++++.-|| .++.+.|.++|+.-... +.-++.--...+.-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 367777887778888999999999998887666 6778888888776 57888999999876654 23344555667777
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 044256 324 LGKEGQIKKENYLLLSMEENGCALDV--DTFNTLMI 357 (363)
Q Consensus 324 ~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~ 357 (363)
+...++-..|..+|++.+..++.|+. ..|..+|.
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 77888888888888888887665553 45665554
No 124
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00015 Score=65.90 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC
Q 044256 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242 (363)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (363)
..|+.+..+-.+.|.+.+|++-|-+. .|+..|..+++...+.|.+++-.+.+.-..+.. -.|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~------------~E~ 1166 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV------------REP 1166 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh------------cCc
Confidence 35666666666666666665554321 255566666666666666666655444332221 122
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 322 (363)
. .=+.|+-+|++.++..+.+++.. .||..-...+.+-|...+.++.|.-+|.. +.-|..+..
T Consensus 1167 ~--id~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~ 1228 (1666)
T KOG0985|consen 1167 Y--IDSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLAS 1228 (1666)
T ss_pred c--chHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHH
Confidence 2 22345666666666555444331 34444445555555555555555554443 333555666
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 323 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
.+...|+++.|...-++. .+..||..+-.+|..
T Consensus 1229 TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVD 1261 (1666)
T ss_pred HHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhc
Confidence 666667776666544333 345666666666654
No 125
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00025 Score=64.49 Aligned_cols=245 Identities=11% Similarity=0.081 Sum_probs=130.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch----
Q 044256 60 TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---- 135 (363)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 135 (363)
..|..+..+-.+.|...+|.+-|-+ ..|+..|..++....+.|.|++-.+.+...++..-.|..
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyik------------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eL 1172 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIK------------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSEL 1172 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHh------------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHH
Confidence 3456666666666666655554422 233445666666666666666666666555554433332
Q ss_pred --hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCh
Q 044256 136 --LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213 (363)
Q Consensus 136 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 213 (363)
++.+.++..+...++ ..||......+.+-|...|.++.|.-+|... ..|..|...+...|++
T Consensus 1173 i~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHH
Confidence 344444444433333 1344445555555555555555555444322 2244444444444444
Q ss_pred hHHHHHHHHHHHhhH------------HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHH
Q 044256 214 EEAMNVSREMILNGF------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281 (363)
Q Consensus 214 ~~a~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 281 (363)
+.|.+.-++...... +--+.+|-..++.....-..-++..|...|-+++.+.+++...... ......
T Consensus 1237 Q~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgm 1315 (1666)
T KOG0985|consen 1237 QGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGM 1315 (1666)
T ss_pred HHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHH
Confidence 444443333321110 0011122233344556667788889999999999999988766443 445667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhC-CCC------ccHHHHHHHHHHHHccCChhHHH
Q 044256 282 FNSLIRGCCKFGIFEIASELFNKLSCK-NLV------ADVVAYNILIHALGKEGQIKKEN 334 (363)
Q Consensus 282 ~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~g~~~~a~ 334 (363)
|+-|.-.|++- ++++..+.++..-.+ +++ -....|+-+.-.|.+-..+|.|.
T Consensus 1316 fTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1316 FTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 88887777765 345544444433221 111 13456777777777777666653
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=7e-05 Score=57.38 Aligned_cols=170 Identities=14% Similarity=0.066 Sum_probs=121.4
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHH
Q 044256 150 LELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFK 229 (363)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (363)
.+.+.......+......-...|+..|++++|.+...... +......=+..+.+..+++-|.+.+++|...
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3444444334444444445567888999999999887622 3333444445567788889998888888654
Q ss_pred HHHHHhHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044256 230 KIFNEMKLCNVVPETFTCNIFIDGLCK----NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305 (363)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 305 (363)
.+..+.+.|.+++.+ .+....|.-+|+++.+. .+|++.+.+-...++...|++++|..++++.
T Consensus 167 ------------ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 167 ------------DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred ------------chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 356677778777765 35688999999999865 4889999999999999999999999999999
Q ss_pred hhCCCCccHHHHHHHHHHHHccCChhH-HHHHHHHHHH
Q 044256 306 SCKNLVADVVAYNILIHALGKEGQIKK-ENYLLLSMEE 342 (363)
Q Consensus 306 ~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~ 342 (363)
.... ..++.+...++.+-...|...+ ..+.+.++..
T Consensus 234 L~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 234 LDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred Hhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8875 4467777777776666776544 4556666655
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=1.5e-05 Score=66.25 Aligned_cols=136 Identities=12% Similarity=0.131 Sum_probs=71.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC-hHHHHHHHH
Q 044256 174 LVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE-TFTCNIFID 252 (363)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~ 252 (363)
..|+.+.|+..++.+... .+-|+..+......+...++..+|.+.+++++... |+ ....-.+..
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--------------P~~~~l~~~~a~ 382 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--------------PNSPLLQLNLAQ 382 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------CCccHHHHHHHH
Confidence 345555555555555544 12233333444455555666666655555555433 33 333444455
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhH
Q 044256 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332 (363)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 332 (363)
++.+.|++.+|+.+++...... +.|+..|..|..+|...|+..++.....+. +...|+++.
T Consensus 383 all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHH
Confidence 5556666666666665555443 555556666666666665555554433332 233455666
Q ss_pred HHHHHHHHHHc
Q 044256 333 ENYLLLSMEEN 343 (363)
Q Consensus 333 a~~~~~~m~~~ 343 (363)
|...+....+.
T Consensus 444 A~~~l~~A~~~ 454 (484)
T COG4783 444 AIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHh
Confidence 66666665554
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00011 Score=56.38 Aligned_cols=240 Identities=14% Similarity=0.101 Sum_probs=143.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhc
Q 044256 34 FCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113 (363)
Q Consensus 34 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 113 (363)
+.-.|++..++..-+..... +-++..-..+-++|...|.+..... ++.... .|.......+......-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-------~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-------ATPLQAVRLLAEYLELE 85 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-------CChHHHHHHHHHHhhCc
Confidence 44467777777665554433 1333344445566666665443322 111111 11122222222222223
Q ss_pred CCHHHHH-HHHHHHHHcCCCcch--------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 044256 114 RLVDQTK-DLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184 (363)
Q Consensus 114 ~~~~~a~-~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 184 (363)
++.+.-+ ++.+.+.......+. .++..+++++|++..+... +......=+..+.+..+.+-|++.
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222 233333333333331 6677888888888776521 223333345567788899999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCH
Q 044256 185 FDSMARKGFMPDVFSYSVLINGYCK----NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260 (363)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 260 (363)
+++|.+.. +..|.+-|..++.+ .+...+|.-+|+++... .+|++.+.+....++...|++
T Consensus 160 lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-------------~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 160 LKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-------------TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-------------cCCChHHHccHHHHHHHhcCH
Confidence 99999862 55666666666654 46788898888887653 358999999999999999999
Q ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCCh-HHHHHHHHHhhhC
Q 044256 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF-EIASELFNKLSCK 308 (363)
Q Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~ 308 (363)
++|..+++...... ..++.+...++.+-...|.. +...+.+.++...
T Consensus 224 eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 224 EEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999999998876 45566666666655556654 4445566666554
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=2e-05 Score=71.13 Aligned_cols=128 Identities=9% Similarity=0.047 Sum_probs=97.5
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP 98 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 98 (363)
.|.++..+..|..+..+.|.+++|..+++...+. .|+ ...+..+..++.+.+++++|+..+++..... +.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------p~ 152 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------SS 152 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------CC
Confidence 4446888888999999999999999999998886 455 4466778888889999999999999998865 55
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHHHc
Q 044256 99 NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMMQR 156 (363)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~ 156 (363)
+......+..++.+.|++++|..+|+++...+..+.. .+-..|+.++|...|+...+.
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6777788888888999999999999998874433222 344556666666666665544
No 130
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.55 E-value=0.00011 Score=66.41 Aligned_cols=139 Identities=11% Similarity=0.021 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 044256 6 GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84 (363)
Q Consensus 6 ~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 84 (363)
.|.+.|+.+.+. .|.+..++....+.|++..+++.|..+.-..-+.. ...-...|....-.|...++...+..-|+.
T Consensus 510 RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs 587 (1238)
T KOG1127|consen 510 RAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS 587 (1238)
T ss_pred HHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH
Confidence 444455544443 44445555555555555555555555421111110 000111222333334445555556666665
Q ss_pred HHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch---------hhhccCChHHHHHHHHHHHH
Q 044256 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---------LLCKKTKLVEANRLLELMMQ 155 (363)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~ 155 (363)
..... +.|...|..+..+|.++|++..|.++|.+.... .|.+ ..+..|.+.+|...+..++.
T Consensus 588 ALR~d-------PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 588 ALRTD-------PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HhcCC-------chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 55543 556778888888888888888888888877654 3443 45677888888887777654
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=0.00018 Score=54.81 Aligned_cols=162 Identities=14% Similarity=0.053 Sum_probs=98.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCCh
Q 044256 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244 (363)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (363)
|..++-+....|+.+.|..+++.+.+. ++-+...-..-..-+-..|++++|.++++.++..+ +.|.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-------------pt~~ 120 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-------------PTDT 120 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-------------cchh
Confidence 444555566677777777777777665 22122221111122344677777777777766654 3455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (363)
+++---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.. |.++..+..+...+
T Consensus 121 v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVL 198 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 55655555555667666777776666654 46677777777777777777777777777777653 33444555555444
Q ss_pred HccC---ChhHHHHHHHHHHH
Q 044256 325 GKEG---QIKKENYLLLSMEE 342 (363)
Q Consensus 325 ~~~g---~~~~a~~~~~~m~~ 342 (363)
...| +.+-+.++|.+.++
T Consensus 199 Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 199 YTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 3333 45556777777766
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.53 E-value=2.5e-05 Score=70.44 Aligned_cols=83 Identities=16% Similarity=0.027 Sum_probs=48.2
Q ss_pred HhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHH
Q 044256 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334 (363)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 334 (363)
...|++.-+.--|-+-.... +....+|..+...+.+..+++.|...|...+... +.|...|-.........|+.-++.
T Consensus 827 sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHH
Confidence 44455555555554444333 4455566666666667777777777777776653 445555655555555556555555
Q ss_pred HHHHH
Q 044256 335 YLLLS 339 (363)
Q Consensus 335 ~~~~~ 339 (363)
.+|..
T Consensus 905 ~lfaH 909 (1238)
T KOG1127|consen 905 ILFAH 909 (1238)
T ss_pred HHHHh
Confidence 55554
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.52 E-value=1.9e-07 Score=48.84 Aligned_cols=33 Identities=36% Similarity=0.516 Sum_probs=27.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 044256 316 AYNILIHALGKEGQIKKENYLLLSMEENGCALD 348 (363)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 348 (363)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888887
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00016 Score=55.14 Aligned_cols=150 Identities=18% Similarity=0.126 Sum_probs=91.2
Q ss_pred cCChhHHHHHHHHHHhccCCCCCccCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCCh
Q 044256 72 TGNMNLTLKLHQEMVNGMGDFGGIYKPNV-FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKL 143 (363)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~ 143 (363)
..+.++..+++.+++...... ...++. ..|..++-+....|+.+.|...++++.+.-+.... .+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 346778888888777654211 134444 34666777888899999999999999876422111 34455666
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 044256 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223 (363)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (363)
++|.++++.+++.+ |.|..++---+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 66666666666554 444455554444444555555666555555544 4446666666666666666666666555555
Q ss_pred HH
Q 044256 224 IL 225 (363)
Q Consensus 224 ~~ 225 (363)
+-
T Consensus 181 ll 182 (289)
T KOG3060|consen 181 LL 182 (289)
T ss_pred HH
Confidence 43
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.00053 Score=58.09 Aligned_cols=131 Identities=14% Similarity=0.086 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc
Q 044256 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277 (363)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 277 (363)
+|...|....+..-...|. .+|....+.+..+ +....++++..+| .++..-|.++|+--.+. +.-
T Consensus 368 v~~~~mn~irR~eGlkaaR------------~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d 433 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAAR------------KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGD 433 (656)
T ss_pred ehhHHHHHHHHhhhHHHHH------------HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCC
Confidence 3444455444555555554 4444455545555 6778888888776 47889999999986654 244
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD--VVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 278 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
++.-....+.-+...++-..+..+|++....++.|+ ...|..+|.-=..-|+...+.++-+++...
T Consensus 434 ~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 434 SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 455556778888899999999999999998866555 578999999889999999999998887653
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.49 E-value=3.3e-07 Score=47.93 Aligned_cols=34 Identities=41% Similarity=0.810 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV 59 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 59 (363)
+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999984
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.47 E-value=2.5e-05 Score=56.41 Aligned_cols=126 Identities=10% Similarity=0.036 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044256 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET----FTCNIFIDGLCKNGHVLEVMELFPTLEIS 273 (363)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 273 (363)
..|..++..+ ..++...+...++.+.... |+. ...-.+...+...|++++|...|+.+...
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--------------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--------------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--------------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3455555555 4778888877777666553 333 23334557788899999999999999987
Q ss_pred cCcch--HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHH
Q 044256 274 NCELF--VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340 (363)
Q Consensus 274 ~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 340 (363)
...|+ ......|...+...|++++|...++..... ......+......+.+.|++++|...|+..
T Consensus 78 ~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 78 APDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 52232 234556778889999999999999875443 345566777788999999999999999864
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.47 E-value=3.3e-07 Score=47.53 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 044256 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCAL 347 (363)
Q Consensus 315 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 347 (363)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 139
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.45 E-value=8.1e-05 Score=65.29 Aligned_cols=251 Identities=12% Similarity=-0.011 Sum_probs=119.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHH
Q 044256 29 SLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108 (363)
Q Consensus 29 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 108 (363)
..+.+......|.+|+.+++.+...+ .-..-|..+.+-|+..|+++.|.++|.+.- .++-.|.
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------------~~~dai~ 799 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------------LFKDAID 799 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------------hhHHHHH
Confidence 34444555566666666666555432 122234555556666666666665554321 2444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcch-------------------hhhccCChHHHHHHHHHHHHc--------CCCCc
Q 044256 109 GLCKDRLVDQTKDLFMEMKDKGINANT-------------------LLCKKTKLVEANRLLELMMQR--------GLNPV 161 (363)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~a~~~~~~~~~~--------~~~~~ 161 (363)
.|.+.|+|+.|.++-++.....-.... .|..-|.++.|.+.+++.... ...|+
T Consensus 800 my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChh
Confidence 566666666665554443211100000 222233333344333321100 01122
Q ss_pred --hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcC
Q 044256 162 --IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239 (363)
Q Consensus 162 --~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 239 (363)
..|...+..-+-..|+...|+..|-+..+ |.+-+..|...+.|++|.++-+.--..+.....-.|-...
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKS 950 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 22344445555566777776666544322 4555666666777777766544311000011111111111
Q ss_pred CCCChH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 240 VVPETF--------TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 240 ~~~~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
+..+.. ....-++..+..+.++-|+++-+-..+.. .|. ...-+..-+-..|++++|.+.+-+..+.
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 111111 12233444556667777777776666554 222 2233444566789999998877776654
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=2.5e-05 Score=65.29 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchH
Q 044256 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV 279 (363)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 279 (363)
...|+..+...++++.|..+++++.+.. |+ ....++..+...++..+|.+++++..+.. +.+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--------------pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~ 234 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--------------PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDS 234 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--------------Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCH
Confidence 3455566666788999988887776543 54 34457777777888889999988888654 5566
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 280 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.....-...+.+.++++.|.++.+++.... +-+..+|..|..+|.+.|+++.|+-.++.+..
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 777777778888999999999999988873 44667899999999999999999988887763
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=1.5e-05 Score=66.67 Aligned_cols=123 Identities=18% Similarity=0.149 Sum_probs=99.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChH
Q 044256 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245 (363)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (363)
..|+..+...++++.|+.+|+++.+.. |+ ....++..+...++..+|.+++++.++.. +.+..
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-------------p~d~~ 235 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-------------PQDSE 235 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-------------CCCHH
Confidence 445666667889999999999999873 44 44557788888889999998888776543 23556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 306 (363)
....-...+...++.+.|+.+.+++.... |.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666777889999999999999999875 6667799999999999999999999888664
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.45 E-value=4.3e-07 Score=47.09 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRP 57 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 57 (363)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 143
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.43 E-value=4.5e-05 Score=66.83 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=29.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 286 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
|..|-+.|..+..+++..+-... .-..|...+..-+-..|+...|..-|-+..+
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 44455555555555554443211 1234455566667777888888776655543
No 144
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=0.00021 Score=63.52 Aligned_cols=244 Identities=16% Similarity=0.125 Sum_probs=164.9
Q ss_pred CcccHHHHH--HHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----
Q 044256 58 NVTTCDTLI--TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG----- 130 (363)
Q Consensus 58 ~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 130 (363)
|..|-..++ +.|...|+.+.|.+-.+.++. ..+|..+.+.|.+.++++-|.-.+-.|....
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAl 792 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARAL 792 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHH
Confidence 444555554 346677999999888776665 4589999999999999988877766664321
Q ss_pred ----CCcch-------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhH
Q 044256 131 ----INANT-------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFS 199 (363)
Q Consensus 131 ----~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 199 (363)
-.++. .....|..++|+.++.+....+ .|=..|-..|.|++|.++-+.=..-. -..|
T Consensus 793 R~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~T 860 (1416)
T KOG3617|consen 793 RRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNT 860 (1416)
T ss_pred HHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee---hhhh
Confidence 11111 5568899999999999887643 34455666899999998875432221 2245
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhc--------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC--------NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271 (363)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 271 (363)
|......+-..++.+.|++.|++.-... ..+++.+.+. .-..|...|.--.+..-..|+.+.|+.+|....
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~ha-fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHA-FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChH-HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 5555566666788899988888643222 1222222211 012344556666666677889999999888765
Q ss_pred hccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 044256 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341 (363)
Q Consensus 272 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 341 (363)
+ |-++++..|-.|+.++|-++-++- -|......+.+.|-..|++.+|...|.+..
T Consensus 940 D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 D---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred h---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3 456677778888888888876652 266777778888989999999988887765
No 145
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.35 E-value=1.1e-05 Score=53.07 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCC-CccHHHHHHHHHHHHccC--------ChhHHHHHHHHHHHcCCCCCHHHHHH
Q 044256 284 SLIRGCCKFGIFEIASELFNKLSCKNL-VADVVAYNILIHALGKEG--------QIKKENYLLLSMEENGCALDVDTFNT 354 (363)
Q Consensus 284 ~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~~ 354 (363)
..|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 677777777776655432 23456778888888888888888888
Q ss_pred HHHHHhh
Q 044256 355 LMISFLQ 361 (363)
Q Consensus 355 ll~~~~~ 361 (363)
++.++.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887764
No 146
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.34 E-value=2.1e-05 Score=65.83 Aligned_cols=105 Identities=15% Similarity=0.018 Sum_probs=90.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCCh
Q 044256 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330 (363)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 330 (363)
...+...|++++|+..|++++... +.+...|..+..+|...|++++|...++++.... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455667899999999999999876 6678889999999999999999999999999875 45778888899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044256 331 KKENYLLLSMEENGCALDVDTFNTLMISF 359 (363)
Q Consensus 331 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 359 (363)
++|...|++.++ +.|+...+..++..|
T Consensus 87 ~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 999999999998 678877777777665
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.33 E-value=1.2e-05 Score=67.51 Aligned_cols=122 Identities=17% Similarity=0.219 Sum_probs=102.0
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHH
Q 044256 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN--CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAY 317 (363)
Q Consensus 240 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (363)
.+.+......++..+....+++.+..++.+..... ...-+.|..++++.|...|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34566677888888888888999999888887652 2223445679999999999999999999999999999999999
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 318 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
+.++..+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 99999999999999999999999888777888888877777654
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.30 E-value=1.8e-05 Score=52.29 Aligned_cols=94 Identities=19% Similarity=0.069 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHc
Q 044256 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326 (363)
Q Consensus 247 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 326 (363)
+..+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++...... +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556777888999999999999998765 5555778888999999999999999999988764 4456788888899999
Q ss_pred cCChhHHHHHHHHHHH
Q 044256 327 EGQIKKENYLLLSMEE 342 (363)
Q Consensus 327 ~g~~~~a~~~~~~m~~ 342 (363)
.|++++|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999999998876
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.28 E-value=3.4e-05 Score=55.66 Aligned_cols=115 Identities=15% Similarity=0.093 Sum_probs=84.8
Q ss_pred hhhhhHHHHHHHHHHcCCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCChh
Q 044256 2 SKVLGALMAFGSFIRRCYRPLN---DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV--TTCDTLITGLRRTGNMN 76 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~ 76 (363)
|+...+...++.+... .|.+ ....-.+...+...|++++|...|+........|+. .....|..++...|+++
T Consensus 25 ~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677778888888876 4534 233444567788899999999999999987522221 23445678888999999
Q ss_pred HHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044256 77 LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126 (363)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 126 (363)
+|+..++.... .......+.....++.+.|++++|...|+..
T Consensus 103 ~Al~~L~~~~~--------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPD--------EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccC--------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 99999977433 2345567778889999999999999998763
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=2e-05 Score=52.07 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHH
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS 105 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (363)
+|..+...+...|++++|...+++..+.. +.+...+..+..++...+++++|.+.++...... +.+..++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-------PDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CcchhHHHH
Confidence 46667788888999999999999988763 3334667778888888899999999999988754 445567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 106 LIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
+...+...|+++.|...+....+.
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcc
Confidence 888899999999999998887654
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.24 E-value=0.00089 Score=54.38 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCc--HhHHHHHHHHHHhc-CChhHHHHHHHHHHHhhHHHHHHHhHh
Q 044256 165 YTPLLNGYCLVGKVNVAIALFDSMARK----GFMPD--VFSYSVLINGYCKN-FNVEEAMNVSREMILNGFKKIFNEMKL 237 (363)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (363)
|......|.+. +++.|...++...+. | .|+ ...+..+...|... |++++|++.|++.... +..-..
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~-----y~~e~~ 150 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL-----YEQEGS 150 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH-----HHHTT-
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHCCC
Confidence 33333444333 666666666654432 2 111 23455555667776 8888888888876532 221110
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-----cchHH-HHHHHHHHHHhcCChHHHHHHHHHhhhCC--
Q 044256 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC-----ELFVE-IFNSLIRGCCKFGIFEIASELFNKLSCKN-- 309 (363)
Q Consensus 238 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~-- 309 (363)
...-..++..+...+.+.|++++|.++|+++..... ..+.. .+...+-++...||+..|.+.+++.....
T Consensus 151 --~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 151 --PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred --hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 011234566677788888999999999988775432 22222 23344456667788888888888877542
Q ss_pred CC--ccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 310 LV--ADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 310 ~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
+. ........|+.++ ..|+.+.......+.-.
T Consensus 229 F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 229 FASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp STTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTT
T ss_pred CCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcc
Confidence 22 2244455556654 55777776666666554
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.22 E-value=3.5e-06 Score=54.37 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=62.5
Q ss_pred ChhhhhHHHHHHHHHHcCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 044256 1 TSKVLGALMAFGSFIRRCY-RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 79 (363)
.|+++.|+.+|+.+.+... .| +...+..+..++.+.|++++|+.++++ .+.+ +.+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4899999999999999733 12 456677799999999999999999998 3332 223345556688999999999999
Q ss_pred HHHHH
Q 044256 80 KLHQE 84 (363)
Q Consensus 80 ~~~~~ 84 (363)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99876
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.22 E-value=9.3e-05 Score=51.36 Aligned_cols=97 Identities=14% Similarity=-0.009 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc---hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CccHHHHHHH
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCEL---FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL--VADVVAYNIL 320 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 320 (363)
++..+...+.+.|++++|.+.|..+.... +. ....+..+..++.+.|+++.|...|+.+..... +.....+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45567777889999999999999998753 22 245677789999999999999999999987531 1125677888
Q ss_pred HHHHHccCChhHHHHHHHHHHHc
Q 044256 321 IHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
..++.+.|++++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 88999999999999999999986
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.22 E-value=4.6e-05 Score=61.53 Aligned_cols=143 Identities=10% Similarity=0.009 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHhccCc
Q 044256 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG-LCKNGHVLEVMELFPTLEISNCE 276 (363)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~ 276 (363)
.+|..++....+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|.++|+...+. ++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-------------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~ 67 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-------------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FP 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CC
Confidence 467778888888888888877777664321 2234445444444 22356677799999998876 46
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccH---HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHH
Q 044256 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV---VAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353 (363)
Q Consensus 277 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 353 (363)
.+...|...+..+...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+ .-|+...+.
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~ 144 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLE 144 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHH
Confidence 77788888888888999999999999998876 33333 5888888888888999999999988887 345545444
Q ss_pred HHHH
Q 044256 354 TLMI 357 (363)
Q Consensus 354 ~ll~ 357 (363)
.++.
T Consensus 145 ~f~~ 148 (280)
T PF05843_consen 145 LFSD 148 (280)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 4443
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.20 E-value=6e-05 Score=52.34 Aligned_cols=101 Identities=12% Similarity=-0.031 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc
Q 044256 24 DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN----VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99 (363)
Q Consensus 24 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 99 (363)
+.++..+...+.+.|++++|...|+.+.... |+ ...+..+..++.+.|+++.|...|+.+....+. .+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~ 75 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK----SPKA 75 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC----CCcc
Confidence 3567788888999999999999999998763 33 245667889999999999999999999875310 1122
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044256 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130 (363)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 130 (363)
..++..+..++.+.|+++.|...++++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 4567888888999999999999999998763
No 156
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.20 E-value=2.9e-05 Score=55.16 Aligned_cols=86 Identities=10% Similarity=-0.065 Sum_probs=77.9
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|..+|+.+... .|.+..-|..|.-++...|++++|+..|....... +-|...+-.+..++...|+.+.|.+
T Consensus 48 ~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 48 VKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred CCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 48999999999999986 88789999999999999999999999999999886 4567788889999999999999999
Q ss_pred HHHHHHhcc
Q 044256 81 LHQEMVNGM 89 (363)
Q Consensus 81 ~~~~~~~~~ 89 (363)
.|+..+...
T Consensus 125 aF~~Ai~~~ 133 (157)
T PRK15363 125 ALKAVVRIC 133 (157)
T ss_pred HHHHHHHHh
Confidence 999988754
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.18 E-value=3.4e-05 Score=64.59 Aligned_cols=86 Identities=10% Similarity=-0.029 Sum_probs=77.1
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|++.|+.+++. .|.+...|..+..+|.+.|++++|+..+++++... +.+...|..+..++...|++++|+.
T Consensus 15 ~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 15 DDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 47899999999999987 77789999999999999999999999999999874 3456688889999999999999999
Q ss_pred HHHHHHhcc
Q 044256 81 LHQEMVNGM 89 (363)
Q Consensus 81 ~~~~~~~~~ 89 (363)
.|+...+..
T Consensus 92 ~~~~al~l~ 100 (356)
T PLN03088 92 ALEKGASLA 100 (356)
T ss_pred HHHHHHHhC
Confidence 999999843
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.18 E-value=2e-06 Score=43.37 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=21.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 044256 316 AYNILIHALGKEGQIKKENYLLLSMEENGC 345 (363)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 345 (363)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 567777777777777777777777776653
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.18 E-value=5e-05 Score=63.88 Aligned_cols=122 Identities=9% Similarity=0.085 Sum_probs=71.7
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhH
Q 044256 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK--GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236 (363)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (363)
+.+......+++.+....+++.+..++...... ....-..|..++++.|.+.|..++++.+++ .-.
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~------------n~~ 130 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLK------------NRL 130 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHh------------Chh
Confidence 445555666666666666666666666666554 111122344567777777777777654333 333
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhc
Q 044256 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292 (363)
Q Consensus 237 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 292 (363)
..|+-||..+++.||+.+.+.|++..|.++...|...+...++.++..-+.+|.+.
T Consensus 131 ~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 131 QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 44566777777777777777777777777766666555555555555444444433
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=3.8e-05 Score=59.95 Aligned_cols=102 Identities=15% Similarity=0.040 Sum_probs=87.6
Q ss_pred HHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHH
Q 044256 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333 (363)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 333 (363)
..+.+++.+|+..|.+.++.. |-|+..|..=..+|.+.|.++.|++-.+..+..+ +--..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 456789999999999999886 7788888888999999999999999999888874 33567899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044256 334 NYLLLSMEENGCALDVDTFNTLMISF 359 (363)
Q Consensus 334 ~~~~~~m~~~g~~p~~~~~~~ll~~~ 359 (363)
.+.|++.++ +.|+..+|..=|...
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 999999998 889999888766654
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.17 E-value=0.00025 Score=52.91 Aligned_cols=99 Identities=8% Similarity=-0.045 Sum_probs=75.6
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccC
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN--VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 97 (363)
.|.....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.. +
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p 103 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-------P 103 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c
Confidence 344566788888899999999999999999987532222 3578888899999999999999999999853 4
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044256 98 PNVFCYGSLIDGLCKDRLVDQTKDLFME 125 (363)
Q Consensus 98 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 125 (363)
.+...+..+..++...|+...+..-++.
T Consensus 104 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 104 KQPSALNNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred ccHHHHHHHHHHHHHcCChHhHhhCHHH
Confidence 4566777777888887776655544443
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.16 E-value=0.00035 Score=49.80 Aligned_cols=103 Identities=11% Similarity=-0.017 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHc
Q 044256 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326 (363)
Q Consensus 247 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 326 (363)
.-.+..-+...|++++|.++|+-+.... +-+..-|..|..++-..|++++|+..|......+ +-|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344555678999999999999999876 6677888899999999999999999999999886 4688899999999999
Q ss_pred cCChhHHHHHHHHHHHc-CCCCCHHH
Q 044256 327 EGQIKKENYLLLSMEEN-GCALDVDT 351 (363)
Q Consensus 327 ~g~~~~a~~~~~~m~~~-g~~p~~~~ 351 (363)
.|+.+.|.+.|+..+.. +-.|....
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~~~~~ 141 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVSEHQI 141 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccChhHHH
Confidence 99999999999998875 33444433
No 163
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.14 E-value=4.5e-05 Score=50.29 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhcC--------ChhHHHHHHHHHHhccCCCCCccC
Q 044256 27 FNSLIKGFCMEGNIRDASQLVKKMATFGC-RPNVTTCDTLITGLRRTG--------NMNLTLKLHQEMVNGMGDFGGIYK 97 (363)
Q Consensus 27 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 97 (363)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+ ++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~------lK 101 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK------LK 101 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc------cC
Confidence 34456667778999999999999999999 999999999999987654 2446788999999988 99
Q ss_pred CchhhHHHHHHHHHh
Q 044256 98 PNVFCYGSLIDGLCK 112 (363)
Q Consensus 98 ~~~~~~~~ll~~~~~ 112 (363)
|+..+|+.++..+.+
T Consensus 102 P~~etYnivl~~Llk 116 (120)
T PF08579_consen 102 PNDETYNIVLGSLLK 116 (120)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999988754
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.13 E-value=1e-05 Score=49.80 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=49.4
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 65 (363)
.|++++|++.|+.+.+. .|.+..++..+..+|.+.|++++|..+++++... .|+...|..+
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 48899999999999887 7778888889999999999999999999998876 5665445444
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.13 E-value=0.00021 Score=57.96 Aligned_cols=139 Identities=14% Similarity=0.124 Sum_probs=78.5
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 044256 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS--- 273 (363)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 273 (363)
...|...+..|...|++..|-.++.++-+. +.. . .|++++|++.|++..+.
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~-----ye~--------~-------------~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEI-----YEE--------Q-------------LGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----HCC--------T-------------T--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-----HHH--------H-------------cCCHHHHHHHHHHHHHHHHH
Confidence 345677777888888888887666654321 110 0 04556666665555432
Q ss_pred -cC-cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC-----CccHH-HHHHHHHHHHccCChhHHHHHHHHHHHc--
Q 044256 274 -NC-ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL-----VADVV-AYNILIHALGKEGQIKKENYLLLSMEEN-- 343 (363)
Q Consensus 274 -~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 343 (363)
+. ..-...+..+...+.+.|++++|.++|+++...-. ..+.. .|...+-++...||+..|.+.+++....
T Consensus 148 e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 148 EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 21 11234556677778888888888888888765421 22222 2334445666778888888888887754
Q ss_pred CCCCC--HHHHHHHHHHHhh
Q 044256 344 GCALD--VDTFNTLMISFLQ 361 (363)
Q Consensus 344 g~~p~--~~~~~~ll~~~~~ 361 (363)
++..+ ......||.+|-.
T Consensus 228 ~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 228 SFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TSTTSHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHh
Confidence 23223 3455566666543
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.13 E-value=3.1e-05 Score=49.93 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHH
Q 044256 257 NGHVLEVMELFPTLEISNCE-LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335 (363)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 335 (363)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. ...+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666666666666655321 2344444466666666666666666666 2221 1123333344566666666666666
Q ss_pred HHHH
Q 044256 336 LLLS 339 (363)
Q Consensus 336 ~~~~ 339 (363)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.10 E-value=5.4e-06 Score=41.77 Aligned_cols=30 Identities=37% Similarity=0.716 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGC 55 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 55 (363)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887763
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.06 E-value=0.00022 Score=57.65 Aligned_cols=145 Identities=9% Similarity=0.054 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-cCChhHHHHHHHHHHhccCCCCCccCCchhhH
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR-TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCY 103 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (363)
.+|..+++...+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|..+|+...+. .+.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-------f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-------FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-------HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------CCCCHHHH
Confidence 478899999999999999999999998543 2234445444444233 56777799999999986 47788899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcCCHHHHH
Q 044256 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNP-VIFTYTPLLNGYCLVGKVNVAI 182 (363)
Q Consensus 104 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~ 182 (363)
...+..+.+.++.+.|..+|++.... +. . .. ....|..++..-.+.|+.+.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~-l~-~------------------------~~~~~~iw~~~i~fE~~~Gdl~~v~ 127 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS-LP-K------------------------EKQSKKIWKKFIEFESKYGDLESVR 127 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT-SS-C------------------------HHHCHHHHHHHHHHHHHHS-HHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh-cC-c------------------------hhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999998754 11 0 11 2357888888888999999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHH
Q 044256 183 ALFDSMARKGFMPDVFSYSVLIN 205 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~ 205 (363)
++.+++.+. .|+......+++
T Consensus 128 ~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 128 KVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHHHHHH--hhhhhHHHHHHH
Confidence 999988876 344333443443
No 169
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.03 E-value=0.0097 Score=53.91 Aligned_cols=218 Identities=17% Similarity=0.050 Sum_probs=141.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 044256 111 CKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183 (363)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 183 (363)
...+++..|+....++.+..+.... +..+.|..++|..+++.....+.. |..|...+-..|...++.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3567788888888888776443332 667899999999888887766544 78899999999999999999999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhc-CC---
Q 044256 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN-GH--- 259 (363)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~--- 259 (363)
+|+..... -|+......+..+|.+-+.+.+-.++--++-+. .+-....|-.+++..... ..
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-------------~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-------------FPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------CCcccchHHHHHHHHHHhccCCcc
Confidence 99998876 566666777777888877766544332222211 122334444444444322 11
Q ss_pred ------HHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHhcCChHHHHHHHHH-hhhCCCCccHHHHHHHHHHHHccCChh
Q 044256 260 ------VLEVMELFPTLEISN-CELFVEIFNSLIRGCCKFGIFEIASELFNK-LSCKNLVADVVAYNILIHALGKEGQIK 331 (363)
Q Consensus 260 ------~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~ 331 (363)
..-|.+.++.+.+.+ ---+..-.......+...|.+++|..++.. ..+.-..-+...-+.-+..+...++|.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 234555566665543 112222233334455678889999999843 333322334444455667777889999
Q ss_pred HHHHHHHHHHHcC
Q 044256 332 KENYLLLSMEENG 344 (363)
Q Consensus 332 ~a~~~~~~m~~~g 344 (363)
+..++..++...|
T Consensus 244 ~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 244 ELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhC
Confidence 9999988888865
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=6.4e-05 Score=58.73 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=82.9
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.++|++|++.|..+++. .|.|+..|..-..+|.+.|.++.|++-.+..+... +--..+|..|..+|...|++++|.+
T Consensus 94 ~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 47899999999999996 88899999999999999999999999999888753 2235689999999999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLI 107 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll 107 (363)
.|...++ +.|+-.+|-.=+
T Consensus 171 aykKaLe--------ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 171 AYKKALE--------LDPDNESYKSNL 189 (304)
T ss_pred HHHhhhc--------cCCCcHHHHHHH
Confidence 9999998 677777665433
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.99 E-value=0.00048 Score=60.46 Aligned_cols=119 Identities=7% Similarity=-0.048 Sum_probs=64.9
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcC
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEG--------NIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTG 73 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~ 73 (363)
+.+.|..+|+++.+. .|.....|..+..++.... +...+.+..++.... ....+...|..+.......|
T Consensus 357 ~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 357 SLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 355666777776665 6645555555444432221 122333333332221 11223345555544555566
Q ss_pred ChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044256 74 NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131 (363)
Q Consensus 74 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 131 (363)
++++|...++++.. ..|+...|..+...+...|+.++|.+.+++....++
T Consensus 435 ~~~~A~~~l~rAl~--------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 435 KTDEAYQAINKAID--------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred CHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 77777777777666 345666666666777777777777777766665433
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.99 E-value=0.00099 Score=45.70 Aligned_cols=106 Identities=14% Similarity=0.053 Sum_probs=82.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCcch--HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCcc----HHHHHHHHHH
Q 044256 250 FIDGLCKNGHVLEVMELFPTLEISNCELF--VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD----VVAYNILIHA 323 (363)
Q Consensus 250 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~ 323 (363)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++..... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 45667788999999999999999875543 4567778889999999999999999988752 33 2333334457
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 324 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
+...|+.++|++.+-.... ++...|..-|..|.+
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 7889999999999887765 455588888887765
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.99 E-value=0.0048 Score=48.73 Aligned_cols=182 Identities=14% Similarity=0.093 Sum_probs=115.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH----HHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTC----DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP 98 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 98 (363)
++..+......+...|++++|.+.|+.+... .|+...- -.+..++.+.+++++|...+++.++..+. .|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-----~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-----HP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-----CC
Confidence 3444545566677899999999999999986 4544322 34667888999999999999999986521 12
Q ss_pred chhhHHHHHHHHHh--c---------------CC---HHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCC
Q 044256 99 NVFCYGSLIDGLCK--D---------------RL---VDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL 158 (363)
Q Consensus 99 ~~~~~~~ll~~~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (363)
+ .-|...+.+.+. . .+ ...|+..|+++++.-+ ++ .-..+|...+..+...=
T Consensus 104 ~-~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP--~S-----~ya~~A~~rl~~l~~~l- 174 (243)
T PRK10866 104 N-IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP--NS-----QYTTDATKRLVFLKDRL- 174 (243)
T ss_pred c-hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc--CC-----hhHHHHHHHHHHHHHHH-
Confidence 2 223333333221 1 12 2456677777776532 22 22333443333332210
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 044256 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK--GFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223 (363)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (363)
...--.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 175 ---a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 175 ---AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred ---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 001124567788999999999999999886 33334556677889999999999997665443
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.96 E-value=0.00042 Score=51.87 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCCCCchhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC---------
Q 044256 8 LMAFGSFIRRCYRPLNDVTFNSLIKGFCME-----GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG--------- 73 (363)
Q Consensus 8 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--------- 73 (363)
...|+..... .. +-.+|..+++.+.+. |..+=....+..|.+.|+.-|..+|+.|++++-+..
T Consensus 34 ~~~f~~~~~~--~k-~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 34 EELFERAPGQ--AK-DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred HHHHHHHhhc--cc-cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 3445554332 44 888999999998754 678888889999999999999999999999986522
Q ss_pred -------ChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCH
Q 044256 74 -------NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV 116 (363)
Q Consensus 74 -------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 116 (363)
+.+-|++++++|...| +-||..++..++..+.+.+..
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~g------V~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNG------VMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcC------CCCcHHHHHHHHHHhccccHH
Confidence 3467999999999999 999999999999999887653
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.96 E-value=0.001 Score=58.43 Aligned_cols=143 Identities=10% Similarity=0.036 Sum_probs=98.0
Q ss_pred CCCCcHhHHHHHHHHHHhc-----CChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCCh-HHHHHHHHHHHhc--------
Q 044256 192 GFMPDVFSYSVLINGYCKN-----FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET-FTCNIFIDGLCKN-------- 257 (363)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~-------- 257 (363)
+.+.+...|...+.+.... +....|..+|++.++.+ |+- ..|..+..++...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--------------P~~a~a~A~la~~~~~~~~~~~~~~ 397 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--------------PDFTYAQAEKALADIVRHSQQPLDE 397 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHHHhcCCccH
Confidence 3456778888888875432 23668888888887765 553 3444433333221
Q ss_pred CCHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHH
Q 044256 258 GHVLEVMELFPTLEIS-NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336 (363)
Q Consensus 258 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 336 (363)
.+...+.+...+.... ..+.++.+|.++.......|++++|...++++...+ |+...|..+...+...|++++|...
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1233444444443332 134456788888777778899999999999999874 6888899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHH
Q 044256 337 LLSMEENGCALDVDTF 352 (363)
Q Consensus 337 ~~~m~~~g~~p~~~~~ 352 (363)
+++... +.|...||
T Consensus 476 ~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 476 YSTAFN--LRPGENTL 489 (517)
T ss_pred HHHHHh--cCCCCchH
Confidence 999887 45665544
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00079 Score=53.06 Aligned_cols=116 Identities=10% Similarity=0.033 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC---ChhHHHHH
Q 044256 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG---NMNLTLKL 81 (363)
Q Consensus 5 ~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 81 (363)
+....-++.-++. .|.|...|-.|..+|.+.|+++.|...|.+..+.. ++|...+..+..++.... ...++..+
T Consensus 139 ~~l~a~Le~~L~~--nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 139 EALIARLETHLQQ--NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3444445555555 78899999999999999999999999999988763 456666666666655433 45789999
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 130 (363)
|+++...+ +-|+.+...|...+...|++.+|...|+.|.+..
T Consensus 216 l~~al~~D-------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALD-------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcC-------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99999875 6677888888889999999999999999998763
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.94 E-value=0.0012 Score=49.20 Aligned_cols=48 Identities=15% Similarity=-0.058 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCC
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 294 (363)
.+..+...+.+.|++++|...+.+..... +.+...+..+...+...|+
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC
Confidence 44445555555555555555555555432 2234444444445544444
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.92 E-value=0.00034 Score=52.00 Aligned_cols=116 Identities=8% Similarity=-0.097 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CcccHHHHHHHHHhcCChhHHHHH
Q 044256 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRP--NVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
+..+.+.+..+.+..........|..+...+...|++++|+..|++.......+ ...+|..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344555566664332222246678888999999999999999999998663222 134788889999999999999999
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLC-------KDRLVDQTKDLFMEM 126 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~~~a~~~~~~~ 126 (363)
++...... +.....+..+...+. ..|+++.|...+++.
T Consensus 95 ~~~Al~~~-------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERN-------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhC-------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99998753 344566777777776 666766665555443
No 179
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.92 E-value=6.2e-05 Score=45.72 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=25.0
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF 53 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 53 (363)
|++++|...|+.+++. .|.++..|..+..++...|++++|...|+++.+.
T Consensus 11 g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp THHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555555555555554 3444555555555555555555555555555443
No 180
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0012 Score=52.00 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=93.2
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcC---ChHHHHHHHHHhhhCCCCccHHHH
Q 044256 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG---IFEIASELFNKLSCKNLVADVVAY 317 (363)
Q Consensus 241 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 317 (363)
+-|...|..|..+|...|+...|...|++..+.. ++|+..+..+..++.... +..++..+|+++...+ +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4578899999999999999999999999999886 778888888887776543 4778999999999875 4577788
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044256 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357 (363)
Q Consensus 318 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 357 (363)
..+...+...|++.+|...|+.|++. -|....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 88888999999999999999999985 444445555544
No 181
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.90 E-value=0.00031 Score=52.59 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhc----------------CChHHHHH
Q 044256 242 PETFTCNIFIDGLCK-----NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF----------------GIFEIASE 300 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a~~ 300 (363)
.+-.+|..+++.|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 456667777776654 355666666667777777777777777777765431 12344556
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHccC
Q 044256 301 LFNKLSCKNLVADVVAYNILIHALGKEG 328 (363)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~li~~~~~~g 328 (363)
++++|...|+-||..++..++..+++.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 6666666666666666666666664443
No 182
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.87 E-value=0.011 Score=49.38 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHH-HHHHH
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISN-CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA-YNILI 321 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li 321 (363)
..+|...+.+-.+....+.|..+|-++.+.+ +.+++.++++++.-++ .|+...|..+|+.-... -||... -+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456667777777777888888998888887 5677888888888665 56778888888765554 233333 33445
Q ss_pred HHHHccCChhHHHHHHHHHH
Q 044256 322 HALGKEGQIKKENYLLLSME 341 (363)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~m~ 341 (363)
..+...++-+.|..+|+...
T Consensus 474 ~fLi~inde~naraLFetsv 493 (660)
T COG5107 474 LFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhH
Confidence 55556666666666666443
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.86 E-value=0.0001 Score=45.23 Aligned_cols=52 Identities=27% Similarity=0.204 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
..|++++|+++|+.+.... |-+..++..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555443 334555555555555555555555555555544
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.84 E-value=0.00012 Score=44.39 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=31.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 286 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
...+.+.|++++|.+.|+++.+.. +-+...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555666666666666665553 33555555555566666666666666666554
No 185
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.011 Score=48.73 Aligned_cols=256 Identities=12% Similarity=-0.052 Sum_probs=133.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHH
Q 044256 30 LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109 (363)
Q Consensus 30 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 109 (363)
....+.+..++..|+..+...++.. +.+..-|..-...+...++++++.--.+.-++.... ........-++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-------~~k~~~r~~~c 126 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-------FSKGQLREGQC 126 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-------ccccccchhhh
Confidence 3444556667778888888777764 333444555555566666666666555544442211 11122222223
Q ss_pred HHhcCCHHHHHHHHH---------------HHHHcCCCcch----------hhhccCChHHHHHHHHHHHHcCCCCchhh
Q 044256 110 LCKDRLVDQTKDLFM---------------EMKDKGINANT----------LLCKKTKLVEANRLLELMMQRGLNPVIFT 164 (363)
Q Consensus 110 ~~~~~~~~~a~~~~~---------------~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (363)
+...++..+|.+.++ ........+.. .+...+++++|.+.--.+++.+ + ...
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~--~n~ 203 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A--TNA 203 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c--chh
Confidence 333333333333222 11111111111 4455667777766665555543 1 122
Q ss_pred HHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHH---H----------HHHHhcCChhHHHHHHHHHHHhhHH
Q 044256 165 YTPLLNG--YCLVGKVNVAIALFDSMARKGFMPDVFSYSVL---I----------NGYCKNFNVEEAMNVSREMILNGFK 229 (363)
Q Consensus 165 ~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~----------~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (363)
+..+++. +--.++.+.+...|++.+.. .|+...-... . .-..+.|.+..|.+.+.+.+..++
T Consensus 204 ~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP- 280 (486)
T KOG0550|consen 204 EALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP- 280 (486)
T ss_pred HHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc-
Confidence 3333332 23356777777777776655 2333222111 1 123566777777777776665542
Q ss_pred HHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
.++.|+...|.....+..+.|+..+|+.--+...... +.-...|..-..++...+++++|.+-++...+.
T Consensus 281 --------~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 281 --------SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred --------cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2445566667666777777888888887777766543 111222333334455567777777777776654
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.82 E-value=0.00086 Score=49.82 Aligned_cols=65 Identities=14% Similarity=-0.019 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 044256 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP--DVFSYSVLINGYCKNFNVEEAMNVSREMILN 226 (363)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (363)
...|..+...+...|++++|+..|+........+ ...++..+...+...|++++|...+++....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567778888888999999999999987653222 2357888888999999999999998887654
No 187
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.81 E-value=0.0011 Score=47.86 Aligned_cols=73 Identities=19% Similarity=0.203 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCCCHHHHHH
Q 044256 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE-----NGCALDVDTFNT 354 (363)
Q Consensus 281 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 354 (363)
+...++..+...|++++|.++.+.+.... +.+...|..+|.++...|+..+|.+.|+++.. .|+.|+..+-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 34566677788999999999999999875 66889999999999999999999999998853 399999887543
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.78 E-value=0.00014 Score=44.81 Aligned_cols=62 Identities=23% Similarity=0.089 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccC-ChhHHHHHHHHHHH
Q 044256 280 EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG-QIKKENYLLLSMEE 342 (363)
Q Consensus 280 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 342 (363)
.+|..+...+...|++++|...|++..+.+ +.+...|..+..++...| ++++|++.+++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444555555555555555555555442 224444444555555555 45555555554443
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.75 E-value=0.00015 Score=44.67 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=57.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHhc
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG-NMNLTLKLHQEMVNG 88 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 88 (363)
++.+|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.++..++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 67889999999999999999999999999874 446678888999999999 799999999998873
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.73 E-value=0.0023 Score=43.91 Aligned_cols=94 Identities=17% Similarity=0.102 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC---chh
Q 044256 27 FNSLIKGFCMEGNIRDASQLVKKMATFGCRPN--VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP---NVF 101 (363)
Q Consensus 27 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~ 101 (363)
...+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++...... +. +..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-------p~~~~~~~ 76 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-------PDDELNAA 76 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCccccHH
Confidence 33455666778888888888888888775543 2355667777888888888888888887642 11 222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 102 CYGSLIDGLCKDRLVDQTKDLFMEMK 127 (363)
Q Consensus 102 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 127 (363)
....+..++...|+.++|++.+-...
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22333446667788888877765544
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.72 E-value=0.0038 Score=49.26 Aligned_cols=165 Identities=13% Similarity=0.171 Sum_probs=100.1
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHh--cC
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTF---NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT--TCDTLITGLRR--TG 73 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~--~~ 73 (363)
.|++++|.+.|+.+... .|.++..- -.++.++.+.+++++|...+++..+. .|+.. -+...+.+.+. .+
T Consensus 45 ~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 45 DGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred CCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhhhhcc
Confidence 48999999999999986 66444443 45678889999999999999999887 33322 23333333221 11
Q ss_pred ---------------C---hhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCC
Q 044256 74 ---------------N---MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK----DKGI 131 (363)
Q Consensus 74 ---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~ 131 (363)
+ ...|+..|+.+++.- |+.. -..+|...+..+. +...
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--------P~S~-------------ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--------PNSQ-------------YTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--------cCCh-------------hHHHHHHHHHHHHHHHHHHHH
Confidence 1 234556667776642 3221 1222222222211 1111
Q ss_pred CcchhhhccCChHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 132 NANTLLCKKTKLVEANRLLELMMQR--GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190 (363)
Q Consensus 132 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 190 (363)
.....+.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1112455666777777777777654 2233455677788999999999999988776543
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.016 Score=44.87 Aligned_cols=148 Identities=7% Similarity=-0.105 Sum_probs=106.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC
Q 044256 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243 (363)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (363)
+.+.++..+...|.+.-....+.+.++...+.++...+.|++.-.+.|+.+.|...|++..+.. ..+ .++...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~--~kL-----~~~q~~ 251 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT--QKL-----DGLQGK 251 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--hhh-----hccchh
Confidence 4566777777788888899999999988767788889999999999999999998888765432 111 122223
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHH
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 321 (363)
..+.......|.-.+++..|...+.++.... +.|+...|.-.-+..-.|+...|.+.++.|... .|...+-++++
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3333344455667788999999998888765 556666665555556679999999999999886 45555555443
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.56 E-value=0.0054 Score=50.58 Aligned_cols=278 Identities=15% Similarity=0.073 Sum_probs=155.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHH
Q 044256 33 GFCMEGNIRDASQLVKKMATFGCRPNVT----TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108 (363)
Q Consensus 33 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 108 (363)
-+++.|+......+|+..++.|- -|.. +|..|..+|.-.+++++|++....=+......+. -.-...+...|..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd-klGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD-KLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc-hhccccccccccc
Confidence 47889999999999999998873 3433 4566667777777888888765421110000000 0011222223333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC-----------
Q 044256 109 GLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK----------- 177 (363)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------- 177 (363)
.+--.|.+++|.-...+-.. -|.++=+++.+. ..+-.+...|-..|+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd----------------~areLgDrv~e~------RAlYNlgnvYhakGk~~g~~~pee~g 161 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLD----------------FARELGDRVLES------RALYNLGNVYHAKGKCTGLEAPEEKG 161 (639)
T ss_pred hhhhhcccchHHHHHHHHhH----------------HHHHHhHHHhhh------HHHhhhhhhhhhcccccCCCChhhcc
Confidence 34444555555544333221 111111111111 122223333332221
Q ss_pred ---------HHHHHHHHHHHH----HcCC-CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCC-C
Q 044256 178 ---------VNVAIALFDSMA----RKGF-MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV-P 242 (363)
Q Consensus 178 ---------~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~ 242 (363)
++.|.++|.+=. +.|- -.--..|..|-..|.-.|+++.|+...+.-+... + +-|-+ .
T Consensus 162 ~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia-----~---efGDrAa 233 (639)
T KOG1130|consen 162 AFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA-----Q---EFGDRAA 233 (639)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHH-----H---HhhhHHH
Confidence 233444443211 1110 0122456667777778899999987655432211 1 11111 2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----c-CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----CCCc
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEIS----N-CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-----NLVA 312 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~ 312 (363)
....+..+..++.-.|+++.|.+.|+..... | -.....+.-+|...|.-..++++|+.++++-... +..-
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2346777888899999999999999875432 2 1234455667888888888899999887764321 1122
Q ss_pred cHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 313 DVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 313 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
....+.+|..+|...|..++|+.+.+.-++
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 567889999999999999999988776554
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.54 E-value=0.0013 Score=47.25 Aligned_cols=85 Identities=8% Similarity=-0.130 Sum_probs=73.4
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|..+|.-+... .|.++.-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|..
T Consensus 50 ~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 50 QGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred CCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 48999999999999885 66688899999999999999999999999877665 3455556678899999999999999
Q ss_pred HHHHHHhc
Q 044256 81 LHQEMVNG 88 (363)
Q Consensus 81 ~~~~~~~~ 88 (363)
.|+..++.
T Consensus 127 ~f~~a~~~ 134 (165)
T PRK15331 127 CFELVNER 134 (165)
T ss_pred HHHHHHhC
Confidence 99999873
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.54 E-value=0.003 Score=50.26 Aligned_cols=100 Identities=10% Similarity=-0.037 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCch
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV----TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNV 100 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
..|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+..+|...|++++|...|+.+.+..+. .+...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~----s~~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK----SPKAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----Ccchh
Confidence 34666665557789999999999999987 4554 46777889999999999999999999875311 12234
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044256 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130 (363)
Q Consensus 101 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 130 (363)
..+-.+..++...|+.+.|..+|+++.+..
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 455556777888999999999999998763
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.52 E-value=0.00085 Score=41.76 Aligned_cols=54 Identities=15% Similarity=-0.043 Sum_probs=28.3
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 288 GCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.|.+.+++++|.++++.+...+ +.++..|.....++.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555555555555555543 33444455555555555555555555555554
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.46 E-value=0.023 Score=41.64 Aligned_cols=132 Identities=13% Similarity=0.066 Sum_probs=92.4
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch
Q 044256 56 RPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135 (363)
Q Consensus 56 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 135 (363)
-|++..--.|..+....|+..+|...|++....- ...|....-.+.++....+++..|...++.+.+..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa--- 156 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA--- 156 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc---
Confidence 5666666677788888888888888888887655 6677777778888888888888888888887765321
Q ss_pred hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 044256 136 LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215 (363)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (363)
+-.|| +.-.+.+.+...|.+..|+.-|+..... -|+...-......+.+.|+.++
T Consensus 157 ---------------------~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 157 ---------------------FRSPD--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred ---------------------cCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhH
Confidence 11344 3445678888889999999999988877 3444443333444667777776
Q ss_pred HHHHHH
Q 044256 216 AMNVSR 221 (363)
Q Consensus 216 a~~~~~ 221 (363)
+..-+.
T Consensus 212 a~aq~~ 217 (251)
T COG4700 212 ANAQYV 217 (251)
T ss_pred HHHHHH
Confidence 654433
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.46 E-value=0.03 Score=42.99 Aligned_cols=172 Identities=18% Similarity=0.153 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc
Q 044256 24 DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN----VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99 (363)
Q Consensus 24 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 99 (363)
+..+-.....+...|++.+|...|+.+... -|+ ....-.++.++.+.|+++.|...++..++.-+. .|.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-----~~~ 77 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-----SPK 77 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT------TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----Ccc
Confidence 444555566677888888888888888776 233 224455677788888888888888888775311 111
Q ss_pred hhhHHHHHHHHHh-------------cCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHH
Q 044256 100 VFCYGSLIDGLCK-------------DRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYT 166 (363)
Q Consensus 100 ~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (363)
..+...+.+.+. .+....|...|+.+++.-+. +.-..+|...+..+...- ...--
T Consensus 78 -~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~-------S~y~~~A~~~l~~l~~~l----a~~e~ 145 (203)
T PF13525_consen 78 -ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN-------SEYAEEAKKRLAELRNRL----AEHEL 145 (203)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT-------STTHHHHHHHHHHHHHHH----HHHHH
T ss_pred -hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC-------chHHHHHHHHHHHHHHHH----HHHHH
Confidence 112222222111 12245677777777765332 223344444444333210 01122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCChhHH
Q 044256 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDV----FSYSVLINGYCKNFNVEEA 216 (363)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 216 (363)
.+...|.+.|.+..|..-++.+.+. -|++ .....++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3567899999999999999999887 2333 3456777888888888755
No 199
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.036 Score=45.93 Aligned_cols=265 Identities=11% Similarity=0.002 Sum_probs=158.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------Ccchhhh
Q 044256 66 ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI-------NANTLLC 138 (363)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~ 138 (363)
...+.+..++..|+..+...++.. +.+..-|..-+..+...|++++|.--.++-.+... .+...+.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 345566778889999999998865 55666777777777777888877766655443221 1222333
Q ss_pred ccCChHHHHHHHH---------------HHHHcCC-CCchhhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 044256 139 KKTKLVEANRLLE---------------LMMQRGL-NPVIFTYTPLL-NGYCLVGKVNVAIALFDSMARKGFMPDVFSYS 201 (363)
Q Consensus 139 ~~~~~~~a~~~~~---------------~~~~~~~-~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (363)
..++..+|...++ .+..... +|...++..+- .++.-.|+.++|..+--...+.. ....+.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~a 205 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEA 205 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHH
Confidence 3334444443332 1111111 23333343332 34455788898888877766652 223344
Q ss_pred HHHHH--HHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---cC
Q 044256 202 VLING--YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE-TFTCNIFIDGLCKNGHVLEVMELFPTLEIS---NC 275 (363)
Q Consensus 202 ~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~ 275 (363)
..+++ +.-.++.+.+...|.+.+..++.. .........|+ ...+..=..-..+.|++..|.+.|.+.+.. +.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh--~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDH--QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhh--hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc
Confidence 44443 345778888888888877655200 00000000000 001111122346789999999999998865 34
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 276 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.|+...|.....+..+.|+..+|+.--++....+ +.-+..|..-..++.-.++|++|.+-|+...+.
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677778888888889999999999999888652 111222333344667789999999999998775
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.43 E-value=0.025 Score=41.46 Aligned_cols=104 Identities=7% Similarity=-0.087 Sum_probs=84.1
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.| ++.--..|..++...|+..+|...|++...--.--|....-.+.++....+++..|...++.+.+.... ..+
T Consensus 86 Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-----~r~ 159 (251)
T COG4700 86 AP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-----FRS 159 (251)
T ss_pred ch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-----cCC
Confidence 56 777777889999999999999999999886544556777778888888999999999999999886521 123
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
+.+.-.+.+.+...|.++.|...|+.....
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 445566778889999999999999988864
No 201
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.42 E-value=0.004 Score=43.22 Aligned_cols=81 Identities=11% Similarity=-0.010 Sum_probs=60.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------------ccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEI---------------SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
|..++..++.++++.|+++....+.+..-. ....|+..+..+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456788899999999999988888877521 12346777778888888888888888888877764
Q ss_pred -CCCCccHHHHHHHHHH
Q 044256 308 -KNLVADVVAYNILIHA 323 (363)
Q Consensus 308 -~~~~~~~~~~~~li~~ 323 (363)
.+++.+...|..|+.-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HcCCCCCHHHHHHHHHH
Confidence 4666677788877763
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.42 E-value=0.0014 Score=47.31 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCccHHHH
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC-----KNLVADVVAY 317 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 317 (363)
+...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+...|.+.|+.+.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 55667788889999999999999999887 88899999999999999999999999998853 4888877653
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.41 E-value=0.0061 Score=48.58 Aligned_cols=103 Identities=11% Similarity=-0.071 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcch---HHHHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCccHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF---VEIFNSLIRGCCKFGIFEIASELFNKLSCKN--LVADVVAYNI 319 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 319 (363)
..|...+....+.|++++|...|+.+.+.. |-+ +..+-.+..+|...|++++|...|+.+...- -+.....+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 456666655567799999999999998763 222 3577788999999999999999999998652 1223556666
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHH
Q 044256 320 LIHALGKEGQIKKENYLLLSMEENGCALDVD 350 (363)
Q Consensus 320 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 350 (363)
+..++...|++++|..+|+++++. .|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 777888999999999999999984 45544
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.37 E-value=0.06 Score=44.42 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=61.7
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCChhH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVT--FNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-VTTCDTLITGLRRTGNMNL 77 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 77 (363)
.|+++.|.+-|+.|.. .| .... ...|.-...+.|..+.|.+.-+..-.. -|. .-.+...+...+..|+|+.
T Consensus 133 eG~~~~Ar~kfeAMl~---dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLD---DP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhc---Ch-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHH
Confidence 4889999999999987 45 3222 333334446788888888888877654 344 3467788999999999999
Q ss_pred HHHHHHHHHhcc
Q 044256 78 TLKLHQEMVNGM 89 (363)
Q Consensus 78 a~~~~~~~~~~~ 89 (363)
|+++++.-++..
T Consensus 207 AlkLvd~~~~~~ 218 (531)
T COG3898 207 ALKLVDAQRAAK 218 (531)
T ss_pred HHHHHHHHHHHH
Confidence 999999877654
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.34 E-value=0.0019 Score=40.12 Aligned_cols=57 Identities=7% Similarity=0.037 Sum_probs=42.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 32 KGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 32 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
..|.+.+++++|+++++.+...+ +.+...|.....++.+.|++++|...|+...+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45677888888888888887764 3455667777777888888888888888887743
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.28 E-value=0.00059 Score=43.15 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=49.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 60 TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP-NVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 128 (363)
.+|+.+..+|...|++++|+..|++..+.....+. -.| ...+++.+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677778888888888888888877754221211 123 267888999999999999999999998764
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.24 E-value=0.057 Score=41.49 Aligned_cols=174 Identities=11% Similarity=0.012 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHH----HHHHHHHHHcCCCcchhhh
Q 044256 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT----KDLFMEMKDKGINANTLLC 138 (363)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~ 138 (363)
-.....+...|++.+|...|+.+...-+. .+--....-.++.++.+.|+++.| .++.+........+.. +.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A-~Y 83 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA-LY 83 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH-HH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH-HH
Confidence 34455667889999999999999986421 122234556678888999997654 3333332221111111 00
Q ss_pred ccCChHHHHHHHHHHHHc---CCCC-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 044256 139 KKTKLVEANRLLELMMQR---GLNP-----VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210 (363)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~---~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (363)
..+...+...... ...+ -...+..++.-|=...-...|...+..+.+. =...--.+...|.+.
T Consensus 84 -----~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 84 -----MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKR 154 (203)
T ss_dssp -----HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCT
T ss_pred -----HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 0111111111100 0000 0123444555555555555665555554432 111122355678899
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChH----HHHHHHHHHHhcCCHHHHH
Q 044256 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF----TCNIFIDGLCKNGHVLEVM 264 (363)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~ 264 (363)
|.+..|..-++.+++.- |++. ....++.+|.+.|..+.+.
T Consensus 155 ~~y~aA~~r~~~v~~~y--------------p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENY--------------PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHS--------------TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHC--------------CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999998888877654 4433 4466778888888877443
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.24 E-value=0.087 Score=43.53 Aligned_cols=275 Identities=9% Similarity=0.005 Sum_probs=134.0
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCccc--HHHHHHHHHhcCChhH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGF--CMEGNIRDASQLVKKMATFGCRPNVTT--CDTLITGLRRTGNMNL 77 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~~~~~~ 77 (363)
||-..|.++-.+..+. +.. |......++.+- .-.|+++.|.+-|+-|... |.... ...|.-..-+.|..+.
T Consensus 98 Gda~lARkmt~~~~~l-lss-DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 98 GDASLARKMTARASKL-LSS-DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred CchHHHHHHHHHHHhh-hhc-cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 4445555554443321 111 444444444432 3457888888888888752 22221 1122222346677777
Q ss_pred HHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cch-------------hhhccCCh
Q 044256 78 TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN-ANT-------------LLCKKTKL 143 (363)
Q Consensus 78 a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-------------~~~~~~~~ 143 (363)
|.+.-+..-... +.-...+.+.+...+..|+|+.|+++++.-+...+. ++. ...-..+.
T Consensus 173 Ar~yAe~Aa~~A-------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 173 ARHYAERAAEKA-------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred HHHHHHHHHhhc-------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 777777766542 333567777888888888888888888776654322 221 00111223
Q ss_pred HHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 044256 144 VEANRLLELMMQRGLNPVIF-TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222 (363)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (363)
..|...-.+..+ +.|+.. .-..-..++.+.|+..++-.+++.+-+.. |.+..+... .+.+.|+ .++.-+++
T Consensus 246 ~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gd--ta~dRlkR 317 (531)
T COG3898 246 ASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGD--TALDRLKR 317 (531)
T ss_pred HHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCC--cHHHHHHH
Confidence 333333222222 233321 11222355666666666666666666553 333222221 1223333 22222222
Q ss_pred HHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHh-cCChHHHHHH
Q 044256 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK-FGIFEIASEL 301 (363)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~ 301 (363)
.. -+..|+. .+......+..+....|++..|..--+..... .|....|..|.+.-.. .|+-.++...
T Consensus 318 a~------~L~slk~----nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 318 AK------KLESLKP----NNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred HH------HHHhcCc----cchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHH
Confidence 21 1112211 12333444455555566666655554444432 4555566555554433 3666666666
Q ss_pred HHHhhhC
Q 044256 302 FNKLSCK 308 (363)
Q Consensus 302 ~~~~~~~ 308 (363)
+.+....
T Consensus 386 lAqav~A 392 (531)
T COG3898 386 LAQAVKA 392 (531)
T ss_pred HHHHhcC
Confidence 6665543
No 209
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.051 Score=49.20 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHH----HHHHHHHcCCCCCHHHHHHH
Q 044256 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY----LLLSMEENGCALDVDTFNTL 355 (363)
Q Consensus 283 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~l 355 (363)
--++..+.+..+.+.+..+.+..-+. ++..|..++..+++.+..+.-.+ +++.......-|......+|
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~L 781 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQIL 781 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 34566677777888887777766543 78899999999999886555444 44444444444544444433
No 210
>PRK15331 chaperone protein SicA; Provisional
Probab=97.19 E-value=0.0078 Score=43.31 Aligned_cols=96 Identities=9% Similarity=0.001 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHH
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS 105 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (363)
.......-+-..|++++|..+|.-+...+ .-+..-|..|..++-..+++++|...|......+ ..|+..+-.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-------~~dp~p~f~ 110 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-------KNDYRPVFF 110 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------cCCCCccch
Confidence 33444455668899999999999888765 3355556777788888899999999999887754 455666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 106 LIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
...++...|+.+.|...|+...+.
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 788999999999999999988863
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.16 E-value=0.091 Score=46.36 Aligned_cols=223 Identities=15% Similarity=0.086 Sum_probs=117.0
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCcch-----hhhccCChHHHHHHHHHHHHcCCCCchhhHHH-----HHH
Q 044256 103 YGSLIDGLCKDRLV--DQTKDLFMEMKDKGINANT-----LLCKKTKLVEANRLLELMMQRGLNPVIFTYTP-----LLN 170 (363)
Q Consensus 103 ~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~ 170 (363)
++..=.+|.+.++. -+...-++++.++|-.|+. .+.-.|.+.+|-++|.+.-..+-. ...|+- ...
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRA--lEmyTDlRMFD~aQ 678 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRA--LEMYTDLRMFDYAQ 678 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhH--HHHHHHHHHHHHHH
Confidence 33444455554443 3444455677777777776 455677777777777653222100 011111 122
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHH
Q 044256 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIF 250 (363)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (363)
-+...|..++-..+.++-.+.. -+..--.+....+...|+.++|..+..+ .|..+++-++...--..+..+...+
T Consensus 679 E~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d---~gW~d~lidI~rkld~~ere~l~~~ 753 (1081)
T KOG1538|consen 679 EFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEICGD---HGWVDMLIDIARKLDKAEREPLLLC 753 (1081)
T ss_pred HHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhc---ccHHHHHHHHHhhcchhhhhHHHHH
Confidence 2333343333333332221110 0111111233445667888887765432 1111122222111112334455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccH-----------HHHHH
Q 044256 251 IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV-----------VAYNI 319 (363)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~ 319 (363)
...+.+...+.-|-++|.+|-+. ..+++.....+++.+|..+-+...+. .|++ .-|..
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeE 822 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEE 822 (1081)
T ss_pred HHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHH
Confidence 55555666777888888776533 34667778889999999888877654 3332 22333
Q ss_pred HHHHHHccCChhHHHHHHHHHHHc
Q 044256 320 LIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 320 li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.=.+|.++|+-.+|.++++++...
T Consensus 823 AqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 823 AQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHhcchHHHHHHHHHhhhh
Confidence 446788889999999998888654
No 212
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.15 E-value=0.036 Score=45.98 Aligned_cols=288 Identities=13% Similarity=-0.012 Sum_probs=156.1
Q ss_pred ChhhhhHHHHHHHHHHcCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHH--HHhc--CCC-CCcccHHHHHHHHHhcC
Q 044256 1 TSKVLGALMAFGSFIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKK--MATF--GCR-PNVTTCDTLITGLRRTG 73 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~--m~~~--~~~-~~~~~~~~l~~~~~~~~ 73 (363)
.|+....+.+|+.+++.|..-. -..+|..|..+|.-.+++++|++.... .+.+ |-+ -...+...|...+--.|
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G 109 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKG 109 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhc
Confidence 3677888999999999876532 234688888888889999999986542 1111 101 11223334455555566
Q ss_pred ChhHHHHHHHHH----HhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHH
Q 044256 74 NMNLTLKLHQEM----VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRL 149 (363)
Q Consensus 74 ~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 149 (363)
.+++|.-.-.+- .+.+. -......+-.+...|...|+.-.... -.+.|..+.. ....++.|.++
T Consensus 110 ~fdeA~~cc~rhLd~areLgD-----rv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~e---v~~al~~Av~f 177 (639)
T KOG1130|consen 110 AFDEALTCCFRHLDFARELGD-----RVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAE---VTSALENAVKF 177 (639)
T ss_pred ccchHHHHHHHHhHHHHHHhH-----HHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHH---HHHHHHHHHHH
Confidence 666665433221 11110 01112234445555544433100000 0000000000 00112223333
Q ss_pred HHHHH----HcC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CcHhHHHHHHHHHHhcCChhHHHHH
Q 044256 150 LELMM----QRG-LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA----RKGFM-PDVFSYSVLINGYCKNFNVEEAMNV 219 (363)
Q Consensus 150 ~~~~~----~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 219 (363)
|..-+ +.| --.....|..|.+.|.-.|+++.|+...+.-. +.|-. .....++.+..++.-.|+++.|.+.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 32211 111 01123456667777777889999887665322 22321 1335677788888889999999998
Q ss_pred HHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----c-CcchHHHHHHHHHHHHhcCC
Q 044256 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS----N-CELFVEIFNSLIRGCCKFGI 294 (363)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~ 294 (363)
++...... .++... .......-.|...|.-..++++|+.++.+-... + ..-....+-+|..+|...|.
T Consensus 258 YK~tl~LA-----ielg~r--~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 258 YKLTLNLA-----IELGNR--TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred HHHHHHHH-----HHhcch--hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 88754322 111111 123344556777777778889998887664321 1 12245678889999999999
Q ss_pred hHHHHHHHHHhhh
Q 044256 295 FEIASELFNKLSC 307 (363)
Q Consensus 295 ~~~a~~~~~~~~~ 307 (363)
.++|+.+.+...+
T Consensus 331 h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 331 HRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887765543
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.13 E-value=0.013 Score=40.75 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=74.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 044256 99 NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178 (363)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (363)
|..++..+|.++++.|+.+....+++..=..++..... . +. .-......|+..+..+++.+|+..|++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~--~-~~---------~~~~spl~Pt~~lL~AIv~sf~~n~~i 68 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK--E-GD---------YPPSSPLYPTSRLLIAIVHSFGYNGDI 68 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc--c-Cc---------cCCCCCCCCCHHHHHHHHHHHHhcccH
Confidence 45688999999999999999999987764332221110 0 00 111234679999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhc
Q 044256 179 NVAIALFDSMARK-GFMPDVFSYSVLINGYCKN 210 (363)
Q Consensus 179 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 210 (363)
..|.++.+...+. +++.+..+|..|+.-....
T Consensus 69 ~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 69 FSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9999999988665 7777889999999855443
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.08 E-value=0.0024 Score=40.35 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhC----CC-Ccc-HHHHHHHHHHHHccCChhHHHHHHHHHH
Q 044256 281 IFNSLIRGCCKFGIFEIASELFNKLSCK----NL-VAD-VVAYNILIHALGKEGQIKKENYLLLSME 341 (363)
Q Consensus 281 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 341 (363)
+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444321 10 011 2334444445555555555555555443
No 215
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.08 E-value=0.13 Score=42.47 Aligned_cols=106 Identities=19% Similarity=0.180 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcch
Q 044256 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278 (363)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 278 (363)
+.+.-+.-+...|+...|.++-.+. -.|+...|-..+.+++..+++++-.++-.. +-+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----------------kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKs 236 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----------------KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKS 236 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----------------CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCC
Confidence 4445555666778777776553332 247888888899999999999887776432 123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHH
Q 044256 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336 (363)
Q Consensus 279 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 336 (363)
+.-|..++.+|.+.|+..+|..++.++. + ..-+..|.+.|++.+|.+.
T Consensus 237 PIGyepFv~~~~~~~~~~eA~~yI~k~~------~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 237 PIGYEPFVEACLKYGNKKEASKYIPKIP------D----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCChHHHHHHHHHCCCHHHHHHHHHhCC------h----HHHHHHHHHCCCHHHHHHH
Confidence 5678888999999999999998888732 1 3445667788888887655
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.02 E-value=0.012 Score=49.67 Aligned_cols=67 Identities=9% Similarity=-0.002 Sum_probs=59.4
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT----TCDTLITGLRRTGNMNLTLKLHQEMVNG 88 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 88 (363)
.|.++..|+.+..+|.+.|++++|+..|++.++. .|+.. +|..+..+|...|+.++|+..+++.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5668899999999999999999999999998886 56643 5889999999999999999999999874
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.11 Score=40.59 Aligned_cols=141 Identities=13% Similarity=-0.053 Sum_probs=100.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHH
Q 044256 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVE 280 (363)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 280 (363)
+.++..+.-.+.+.-....+++.++ ...+.++.....+++.-...|+.+.|...|+...+..-..|..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~------------~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~ 248 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIK------------YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL 248 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHH------------hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc
Confidence 4455555556777777655555544 3345678888899999999999999999999876553344444
Q ss_pred HHHH-----HHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 044256 281 IFNS-----LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355 (363)
Q Consensus 281 ~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 355 (363)
..+. ....|.-++++..|...++++...+ +.|+...|.-.-+..-.|+...|++.++.|.+ ..|...+-+++
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 4433 3345667789999999999998875 44677777666677778999999999999998 45666555544
Q ss_pred H
Q 044256 356 M 356 (363)
Q Consensus 356 l 356 (363)
+
T Consensus 326 ~ 326 (366)
T KOG2796|consen 326 L 326 (366)
T ss_pred H
Confidence 3
No 218
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.11 Score=41.39 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=25.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 044256 34 FCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86 (363)
Q Consensus 34 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 86 (363)
....|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555555555555554432 1223334444555555555555555555444
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.85 E-value=0.32 Score=43.54 Aligned_cols=200 Identities=17% Similarity=0.132 Sum_probs=99.1
Q ss_pred cCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch---hhhccCChHHHHHHHHHHHHcCCCCchhhH-------
Q 044256 96 YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---LLCKKTKLVEANRLLELMMQRGLNPVIFTY------- 165 (363)
Q Consensus 96 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------- 165 (363)
++.+......+..++.+.|.-++|.+.|-+.. .|.. .+...++|.+|.++-....- |.+.+.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pkaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaq 919 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPKAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQ 919 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcHHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHH
Confidence 46667777888888888888888877764432 1111 44555666666655433211 111111
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCcHh----HHHHHH-HHH----------HhcCChhHHHHH
Q 044256 166 -------TPLLNGYCLVGKVNVAIALFDSMARK----GFMPDVF----SYSVLI-NGY----------CKNFNVEEAMNV 219 (363)
Q Consensus 166 -------~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~----~~~~l~-~~~----------~~~~~~~~a~~~ 219 (363)
.--|..+.+.|.+-.|-+++.+|.+. +.+|-.. ...+++ .-+ -..|..++|..+
T Consensus 920 ll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~l 999 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDL 999 (1189)
T ss_pred HHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhh
Confidence 12345667777777777777777543 3333221 111111 111 124555555554
Q ss_pred HHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHhcCChHHH
Q 044256 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-NCELFVEIFNSLIRGCCKFGIFEIA 298 (363)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a 298 (363)
++........++.+..-+ -.....|..|.+--...|.++.|++.--.+.+. .+-|...+|+.|.-+-+....+...
T Consensus 1000 les~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtC 1076 (1189)
T KOG2041|consen 1000 LESGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTC 1076 (1189)
T ss_pred hhhhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhh
Confidence 444332221122221111 022334444555555667777776643333322 2345566777666655555555555
Q ss_pred HHHHHHhh
Q 044256 299 SELFNKLS 306 (363)
Q Consensus 299 ~~~~~~~~ 306 (363)
.+.|-++.
T Consensus 1077 SKAfmkLe 1084 (1189)
T KOG2041|consen 1077 SKAFMKLE 1084 (1189)
T ss_pred HHHHHHHH
Confidence 55444443
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.85 E-value=0.08 Score=36.45 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 310 (363)
.+...+.+....|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445666667777777777777766544 56666666777777777777777777777776664
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.029 Score=46.42 Aligned_cols=108 Identities=16% Similarity=-0.001 Sum_probs=82.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc-----cC---------cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHH
Q 044256 251 IDGLCKNGHVLEVMELFPTLEIS-----NC---------ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316 (363)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~-----~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 316 (363)
...+.+.|++..|...|++++.. +. ..-..++..|..+|.+.+++..|++.-.+.+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 34567888888888888775532 11 1123456778888889999999999999988876 667877
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 317 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
.-.-..++...|+++.|...|+++++ +.|+......=|..|.+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence 77778899999999999999999998 78887777766665543
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.78 E-value=0.33 Score=42.69 Aligned_cols=163 Identities=18% Similarity=0.151 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH------hHHHHHHHHHHh----cCChhHHHHHHHHHHHhhHHHHHHH
Q 044256 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV------FSYSVLINGYCK----NFNVEEAMNVSREMILNGFKKIFNE 234 (363)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (363)
+..+++...=.||-+.+++.+....+.+---.+ -.|..++..++. ....+.|.+++..+.+.-
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y------- 263 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY------- 263 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-------
Confidence 455666777789999999999887664211122 223333433332 456677887777776654
Q ss_pred hHhcCCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcc--C-cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 044256 235 MKLCNVVPETFTCNIFI-DGLCKNGHVLEVMELFPTLEISN--C-ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310 (363)
Q Consensus 235 ~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 310 (363)
|+...|...- +.+...|++++|++.|+...... . ......+--+...+.-.+++++|.+.|..+.+..
T Consensus 264 -------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s- 335 (468)
T PF10300_consen 264 -------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES- 335 (468)
T ss_pred -------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-
Confidence 7877765543 55667899999999999766421 1 2334456667777888999999999999999864
Q ss_pred CccHHHHHHHHH-HHHccCCh-------hHHHHHHHHHHH
Q 044256 311 VADVVAYNILIH-ALGKEGQI-------KKENYLLLSMEE 342 (363)
Q Consensus 311 ~~~~~~~~~li~-~~~~~g~~-------~~a~~~~~~m~~ 342 (363)
......|..+.. ++...|+. ++|.++|.+...
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 445566655554 44567777 888888888754
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.74 E-value=0.076 Score=45.94 Aligned_cols=133 Identities=16% Similarity=0.126 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhH
Q 044256 24 DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCY 103 (363)
Q Consensus 24 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (363)
..-.+.++..+.+.|-++.|+++-..-. .-.....+.|+++.|.++.+ ..++...|
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~------------~~~~~~~W 350 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAK------------ELDDPEKW 350 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCC------------CCSTHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHH------------hcCcHHHH
Confidence 3447777777777887777777653322 23555667788887776543 23456789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 044256 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183 (363)
Q Consensus 104 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 183 (363)
..|.....+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.+
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~~------------------------------------d~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKAK------------------------------------DFSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHCT-------------------------------------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhc------------------------------------CccccHHHHHHhCCHHHHHH
Confidence 999999999999988888887754 35566667777888877777
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 044256 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222 (363)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (363)
+.+.....|- ++....++.-.|+.++..+++.+
T Consensus 395 l~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777666541 44444455556777777665544
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.72 E-value=0.37 Score=42.37 Aligned_cols=116 Identities=21% Similarity=0.109 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCcHhHHHHHHHHHHhcCChhHHH
Q 044256 142 KLVEANRLLELMMQRGLNPVIFTYTPL-LNGYCLVGKVNVAIALFDSMARKG---FMPDVFSYSVLINGYCKNFNVEEAM 217 (363)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~ 217 (363)
+.+.|.++++.+.+. -|+...|... .+.+...|+++.|++.|+...... .+.....+--+.-.+.-..+|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 334444444444443 4665555433 456677899999999999765421 1122334445566678889999999
Q ss_pred HHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHH-HhcCCH-------HHHHHHHHHHHh
Q 044256 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL-CKNGHV-------LEVMELFPTLEI 272 (363)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~-------~~a~~~~~~~~~ 272 (363)
..+..+.+.. ..+..+|..+..+| ...|+. ++|.++|+++..
T Consensus 326 ~~f~~L~~~s-------------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKES-------------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhcc-------------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8888887654 35556666665544 346766 888888887653
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.70 E-value=0.05 Score=46.17 Aligned_cols=66 Identities=11% Similarity=-0.104 Sum_probs=57.3
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchH---HHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV---EIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
.+...++.+..+|...|++++|+..|++.++.+ +-+. .+|..+..+|...|++++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456789999999999999999999999998874 3333 45899999999999999999999999875
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.68 E-value=0.31 Score=40.87 Aligned_cols=169 Identities=13% Similarity=-0.023 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--cch---------hhhc---cCChHHHHHHHHHHHHcCCCCchhhH
Q 044256 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN--ANT---------LLCK---KTKLVEANRLLELMMQRGLNPVIFTY 165 (363)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~---------~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (363)
..+...++-+|-...+++...++.+.+...... ++. ++.+ .|+.++|++++..+......++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334446666799999999999999999875211 111 4455 89999999999997776667888888
Q ss_pred HHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhH
Q 044256 166 TPLLNGYCL---------VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236 (363)
Q Consensus 166 ~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (363)
..+...|-. ....++|+..|.+.-+. .|+..+-..+...+...|...+...-++++. ..+-..+.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~----~~l~~llg 294 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIG----VKLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHH----HHHHHHHH
Confidence 888776643 12367788888766554 3554443333333334444322221111111 01111111
Q ss_pred hcC---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 044256 237 LCN---VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274 (363)
Q Consensus 237 ~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 274 (363)
+.| -..+--.+..++.++.-.|+.++|.+..++|.+..
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 122 12333445566666666777777777777776553
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.61 E-value=0.03 Score=43.97 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHH
Q 044256 242 PETFTCNIFIDGLCK-----NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVA 316 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 316 (363)
-|..+|...+..+.. .+.++=....++.|.+.|+.-|..+|+.|+..+-+..-. | ...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P-~nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------P-QNV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------c-HHH
Confidence 355556666655543 245555566667777777777777777777665443211 1 011
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 044256 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362 (363)
Q Consensus 317 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 362 (363)
+......|=+. -+=++.++++|...|+.||..+-..|+++|.+.
T Consensus 128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~ 171 (406)
T KOG3941|consen 128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRW 171 (406)
T ss_pred HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccc
Confidence 11111111111 123566777777777777777777777776654
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.09 Score=43.65 Aligned_cols=98 Identities=15% Similarity=0.030 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 323 (363)
..++..+.-++.+.+++.+|++.-.+....+ ++|....-.=..+|...|+++.|+..|+++++.. +-|...-+.++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3467788888999999999999999999887 7888887778899999999999999999999874 3345555555555
Q ss_pred HHccCChh-HHHHHHHHHHHc
Q 044256 324 LGKEGQIK-KENYLLLSMEEN 343 (363)
Q Consensus 324 ~~~~g~~~-~a~~~~~~m~~~ 343 (363)
--+..+.. ...++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 55544444 457788888754
No 229
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.57 E-value=0.39 Score=40.71 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=43.8
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 044256 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNT 354 (363)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 354 (363)
+...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|..++..+ +|+..++++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 3466788877765555554 4789999998888888999999999988764 566665554
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.24 Score=38.24 Aligned_cols=211 Identities=14% Similarity=0.091 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 044256 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180 (363)
Q Consensus 101 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 180 (363)
..|.....+|-...++++|...+.+..+..-.-.+.+...+.++.|.-+.+++... +.-...|+--...|..+|.++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcch
Confidence 34555556677778888888777766542111112333344455555555554443 1223345555666666676666
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCH
Q 044256 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260 (363)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 260 (363)
|-..+++.-+. ..+-++++|++++.+...- ++.=.+ ...-...+..+-..+.+...+
T Consensus 110 AAmaleKAak~----------------lenv~Pd~AlqlYqralav-----ve~~dr--~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 110 AAMALEKAAKA----------------LENVKPDDALQLYQRALAV-----VEEDDR--DQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHH-----Hhccch--HHHHHHHHHHhhhHhhhhHHh
Confidence 66555543321 2233444444444433211 000000 001112344444555666666
Q ss_pred HHHHHHHHHHHhc----cCcch-HHHHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCccHHHHHHHHHHHHccCChhH
Q 044256 261 LEVMELFPTLEIS----NCELF-VEIFNSLIRGCCKFGIFEIASELFNKLSCK---NLVADVVAYNILIHALGKEGQIKK 332 (363)
Q Consensus 261 ~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~ 332 (363)
++|-..+.+-... .-.++ -..|...|-.+....++..|.+.++.-.+. .-+-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6665544432211 10111 234555666666677888888888774432 1233566777777776 4577777
Q ss_pred HHHHH
Q 044256 333 ENYLL 337 (363)
Q Consensus 333 a~~~~ 337 (363)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 66553
No 231
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.49 E-value=0.39 Score=39.72 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC
Q 044256 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242 (363)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (363)
.+.+..|.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++-..+... +-
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------------------kK 235 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------------------KK 235 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------------------CC
Confidence 455666777888999988888866652 37899999999999999999987644221 13
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 322 (363)
++.-|..++.+|.+.|+..+|..+..++. + ..-+..|.++|++.+|.+.--+.. |...+..+..
T Consensus 236 sPIGyepFv~~~~~~~~~~eA~~yI~k~~-----~-----~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~ 299 (319)
T PF04840_consen 236 SPIGYEPFVEACLKYGNKKEASKYIPKIP-----D-----EERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILK 299 (319)
T ss_pred CCCChHHHHHHHHHCCCHHHHHHHHHhCC-----h-----HHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHH
Confidence 45779999999999999999999887722 1 445778899999999987654432 5555555444
Q ss_pred HH
Q 044256 323 AL 324 (363)
Q Consensus 323 ~~ 324 (363)
.+
T Consensus 300 ~~ 301 (319)
T PF04840_consen 300 RC 301 (319)
T ss_pred HC
Confidence 43
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.081 Score=42.74 Aligned_cols=116 Identities=10% Similarity=0.090 Sum_probs=73.9
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH----HHHHHHHhcCChh
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD----TLITGLRRTGNMN 76 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~l~~~~~~~~~~~ 76 (363)
+|++.+|-..++++++. .|.|..+++-.=.++.-+|+.+.-...++++...- .||...|. ...-++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 35666777777777776 66566777777777777777777777777766431 23433322 2233345667777
Q ss_pred HHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044256 77 LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126 (363)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 126 (363)
+|.+.-++..+.+ +-|...-.++...+...|++.++.+...+-
T Consensus 193 dAEk~A~ralqiN-------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQIN-------RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCC-------CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 7777777777654 455556666666667777777777666543
No 233
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.41 E-value=0.063 Score=42.82 Aligned_cols=79 Identities=11% Similarity=0.018 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCccHHHHH
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC-----KNLVADVVAYN 318 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 318 (363)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3355556666666666666666666666554 55566666666666666666666666665543 35555555555
Q ss_pred HHHHH
Q 044256 319 ILIHA 323 (363)
Q Consensus 319 ~li~~ 323 (363)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44443
No 234
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.73 Score=41.72 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=77.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCc
Q 044256 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276 (363)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 276 (363)
..+.+--+.-+...|+-.+|.++-.+. -.||-..|-.-+.+++..+++++-+++-+...
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~F----------------kipdKr~~wLk~~aLa~~~kweeLekfAkskk----- 742 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDF----------------KIPDKRLWWLKLTALADIKKWEELEKFAKSKK----- 742 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhc----------------CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----
Confidence 334444455566677777776554433 24788888888899999999988777655433
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHH
Q 044256 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336 (363)
Q Consensus 277 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 336 (363)
.+.-|.-++.+|.+.|+.++|.+++-+.... . -...+|.+.|++.+|.++
T Consensus 743 -sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 743 -SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred -CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence 2456777889999999999999998776432 1 456778888888887665
No 235
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.23 E-value=0.013 Score=32.01 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHH
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTL 65 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 65 (363)
.+|..+...|.+.|++++|.++|++.++.. +-|...|..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 578889999999999999999999999873 3344444443
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.21 E-value=0.091 Score=36.11 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=70.2
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChhH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV---TTCDTLITGLRRTGNMNL 77 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 77 (363)
.|+.+.|++.|...+.. .|..+.+||.-..++.-.|+.++|++=+++..+..-..+. ..|..-...|...|+.+.
T Consensus 56 ~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred ccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 47899999999999885 7778999999999999999999999999998876212222 234444556778899999
Q ss_pred HHHHHHHHHhccC
Q 044256 78 TLKLHQEMVNGMG 90 (363)
Q Consensus 78 a~~~~~~~~~~~~ 90 (363)
|..-|+..-+.|.
T Consensus 134 AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 134 ARADFEAAAQLGS 146 (175)
T ss_pred HHHhHHHHHHhCC
Confidence 9999998887763
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.24 Score=40.14 Aligned_cols=117 Identities=12% Similarity=0.036 Sum_probs=56.3
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHH----HHHHHHHHhcCCh
Q 044256 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY----SVLINGYCKNFNV 213 (363)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 213 (363)
...|+..+|-..++++++. .|.|...+...=.+|.-.|+.+.....++++... ..||...| ....-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3455555555555555544 2445555555555566666666555555555433 11222222 2222233455666
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044256 214 EEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269 (363)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 269 (363)
++|.+.-++..+.+ +.|.-.-.+....+...|++.++.+.+.+
T Consensus 192 ~dAEk~A~ralqiN-------------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-------------RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCC-------------CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66655554444332 22333334444444455566666555544
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.16 E-value=0.35 Score=42.00 Aligned_cols=161 Identities=14% Similarity=0.029 Sum_probs=100.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHH
Q 044256 66 ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145 (363)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.....-.++++.+.++.+.-.-.. .....-.+.+++.+.+.|..+.|+++...-..+ -....+.|+++.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-------~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r----FeLAl~lg~L~~ 336 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-------NIPKDQGQSIARFLEKKGYPELALQFVTDPDHR----FELALQLGNLDI 336 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-------G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH----HHHHHHCT-HHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-------cCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH----hHHHHhcCCHHH
Confidence 344556788888777765221110 112455888999999999999999886553321 114566777777
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044256 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225 (363)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (363)
|.++.+. .++...|..|.+...+.|+++-|++.|.+..+ |..|+-.|...|+.+.-.++.+....
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 7776543 34667999999999999999999999987554 56666678888888777666555544
Q ss_pred hhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044256 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270 (363)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 270 (363)
.+ -++....++...|+.++..+++.+.
T Consensus 402 ~~------------------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RG------------------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-------------------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cc------------------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33 2455556666778888888877654
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.13 E-value=0.67 Score=38.91 Aligned_cols=170 Identities=12% Similarity=-0.050 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCcHhHHHHHHHHHHh---cCChhHHHHHHHHHHHhhHHHHHHHhHhc
Q 044256 165 YTPLLNGYCLVGKVNVAIALFDSMARKG---FMPDVFSYSVLINGYCK---NFNVEEAMNVSREMILNGFKKIFNEMKLC 238 (363)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (363)
...++-.|....+++..+++.+.+.... +.-....--...-++.+ .|+.++|++++..+...
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~------------ 211 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES------------ 211 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc------------
Confidence 3345557889999999999999988751 11122222233445666 89999998777764322
Q ss_pred CCCCChHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCC-hH---HHHHHH---
Q 044256 239 NVVPETFTCNIFIDGLCK---------NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI-FE---IASELF--- 302 (363)
Q Consensus 239 ~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~---~a~~~~--- 302 (363)
...+++.+|..+...|-. ....++|+..|++.-+.. |+...-..++..+...|. ++ +..++-
T Consensus 212 ~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l 289 (374)
T PF13281_consen 212 DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKL 289 (374)
T ss_pred cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 235777788887776632 123778888888776543 444332223333333332 11 222222
Q ss_pred HH-hhhCCC---CccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 044256 303 NK-LSCKNL---VADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349 (363)
Q Consensus 303 ~~-~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 349 (363)
.. +.+.|. ..+--.+.+++.++.-.|++++|.+.+++|... .+|..
T Consensus 290 ~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l-~~~~W 339 (374)
T PF13281_consen 290 SSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL-KPPAW 339 (374)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCcch
Confidence 22 222332 234445567788889999999999999999975 24443
No 240
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.06 E-value=0.0091 Score=30.45 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=26.1
Q ss_pred HHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 044256 11 FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDAS 44 (363)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~ 44 (363)
|++.++. .|.++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~--~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4556665 7878999999999999999998885
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.01 E-value=0.032 Score=43.79 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=60.3
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcC----------------CHHHHHHHHHHHHhcCCCCCcccHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEG----------------NIRDASQLVKKMATFGCRPNVTTCDTL 65 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~----------------~~~~a~~~~~~m~~~~~~~~~~~~~~l 65 (363)
+.++--...+..|.+.|+.. |..+|+.|++.+-+-. +-+-++.++++|...|+.||.++-..|
T Consensus 86 ~HveFIy~ALk~m~eyGVer-Dl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVER-DLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred chHHHHHHHHHHHHHhcchh-hHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 44556666778899999999 9999999999875432 345688999999999999999999999
Q ss_pred HHHHHhcCCh
Q 044256 66 ITGLRRTGNM 75 (363)
Q Consensus 66 ~~~~~~~~~~ 75 (363)
+.++.+.+-.
T Consensus 165 vn~FGr~~~p 174 (406)
T KOG3941|consen 165 VNAFGRWNFP 174 (406)
T ss_pred HHHhcccccc
Confidence 9999887753
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=95.98 E-value=0.37 Score=41.21 Aligned_cols=119 Identities=8% Similarity=-0.029 Sum_probs=84.3
Q ss_pred hhhhHHHHHHHHHH-cCCCCCchhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 044256 3 KVLGALMAFGSFIR-RCYRPLNDVTFNSLIKGFCME---------GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72 (363)
Q Consensus 3 ~~~~A~~~~~~~~~-~~~~p~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 72 (363)
+.+.|..+|++... ....|.....|..+..++... ....+|.++-++..+.+ +-|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 34678888988882 223665567777666655332 23556777777777776 55677777777777788
Q ss_pred CChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 73 GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 73 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
++++.|...|++....+ +....+|........-.|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-------TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 88999999999998854 333556666666677789999999988886654
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.93 E-value=0.04 Score=30.07 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 282 FNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 282 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
+..+...|...|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.37 Score=37.99 Aligned_cols=98 Identities=17% Similarity=0.090 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCccHHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISN--CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN--LVADVVAYNIL 320 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l 320 (363)
..|+.-+..+ +.|++..|...|...++.. -.-.+..+-.|..++...|+++.|..+|..+.+.- -+.-+..+--+
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3688777754 6688999999999998763 12234456778999999999999999999998641 12235777788
Q ss_pred HHHHHccCChhHHHHHHHHHHHc
Q 044256 321 IHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
..+..+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 88999999999999999999985
No 245
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.82 E-value=1.2 Score=39.27 Aligned_cols=118 Identities=9% Similarity=0.051 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-hcCChhHHHHHHH
Q 044256 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR-RTGNMNLTLKLHQ 83 (363)
Q Consensus 5 ~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~ 83 (363)
+.+..+++.++.. .|.--.-|......=.+.|..+.+..+|++.... ++.+...|......+. ..|+.+.....|+
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4556666666655 6644445666666667778888888888887753 4556666665554443 4456677777777
Q ss_pred HHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 84 EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
.....-+. --.+...|...|..-..++++.....++++.++.
T Consensus 139 ~A~~~vG~----dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 139 RAKSYVGL----DFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccc----chhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 77664321 1223556777777777777788887777777654
No 246
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.82 E-value=1 Score=38.36 Aligned_cols=210 Identities=15% Similarity=0.099 Sum_probs=132.1
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCcchhhhccCC
Q 044256 69 LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG------INANTLLCKKTK 142 (363)
Q Consensus 69 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~ 142 (363)
+...++-+.|++..+.... ..|+.. -.+-..|.-..+.+.....|+...+.- ...+......|+
T Consensus 312 ~~~isd~q~al~tv~rg~~--------~spsL~--~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N 381 (660)
T COG5107 312 LIGISDKQKALKTVERGIE--------MSPSLT--MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNN 381 (660)
T ss_pred HhhccHHHHHHHHHHhccc--------CCCchh--eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCC
Confidence 3445566667766655443 234311 122334444555555555555543210 111111122344
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHhHHHHHHHHHHhcCChhHHHHHHH
Q 044256 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG-FMPDVFSYSVLINGYCKNFNVEEAMNVSR 221 (363)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (363)
++...+++-+-+. .-..+|...++.-.+..-++.|..+|-++.+.| +.+++..++++|..++ .|+..-|..+|+
T Consensus 382 ~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ife 456 (660)
T COG5107 382 FEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFE 456 (660)
T ss_pred ccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHH
Confidence 4333333222111 123577888888888888999999999999988 6788889999998665 678888888877
Q ss_pred HHHHhhHHHHHHHhHhcCCCCChHHH-HHHHHHHHhcCCHHHHHHHHHHHHhccCcch--HHHHHHHHHHHHhcCChHHH
Q 044256 222 EMILNGFKKIFNEMKLCNVVPETFTC-NIFIDGLCKNGHVLEVMELFPTLEISNCELF--VEIFNSLIRGCCKFGIFEIA 298 (363)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a 298 (363)
--+..- ||...| +-.+..+...++-..|..+|+..+.. +..+ ..+|..+|.--..-|++..+
T Consensus 457 lGl~~f--------------~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 457 LGLLKF--------------PDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred HHHHhC--------------CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHH
Confidence 654432 554443 45677778889999999999965543 1222 45888899888889999888
Q ss_pred HHHHHHhhhC
Q 044256 299 SELFNKLSCK 308 (363)
Q Consensus 299 ~~~~~~~~~~ 308 (363)
..+-+++...
T Consensus 522 ~sLe~rf~e~ 531 (660)
T COG5107 522 YSLEERFREL 531 (660)
T ss_pred HhHHHHHHHH
Confidence 8877777654
No 247
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.5 Score=34.50 Aligned_cols=125 Identities=14% Similarity=0.069 Sum_probs=82.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHH-----HHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 044256 60 TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS-----LIDGLCKDRLVDQTKDLFMEMKDKGINAN 134 (363)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 134 (363)
..|...+. ..+.+..++|+.-|..+.+.+ . -.|-. ........|+...|...|+++-.....|.
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg------~----g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~ 128 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTG------Y----GSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ 128 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcC------C----CcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc
Confidence 34444443 345677888888888888766 1 12222 23345678888888888888876655554
Q ss_pred h-----------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044256 135 T-----------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP 195 (363)
Q Consensus 135 ~-----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (363)
. .+...|.++......+.+...+-+.....-..|.-+-.+.|++..|.++|..+......|
T Consensus 129 ~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 129 IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 3 456677777777776666655544445556667777778888888888888877653333
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.76 E-value=0.25 Score=34.90 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=49.9
Q ss_pred ChhhhhHHHHHHHHHHcCCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 044256 1 TSKVLGALMAFGSFIRRCYR-PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR 71 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 71 (363)
.|++++|.+.|+.+...-.. |-...+--.++.+|.+.+++++|...+++.++....-...-|...+.+++.
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 47899999999999886221 124556777888999999999999999999887422112345555555443
No 249
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.75 E-value=0.52 Score=34.43 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLKLHQEMVN 87 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 87 (363)
.|..-++ +++.+..++|+.-|..+.+.|...-+. ..-.........|+...|...|+++-.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 3443333 234444555555555555443221000 001111223344555555555555544
No 250
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.64 E-value=0.19 Score=40.14 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCCCHHHHH
Q 044256 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE-----NGCALDVDTFN 353 (363)
Q Consensus 279 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 353 (363)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4577888999999999999999999999875 66889999999999999999999999998875 48999988887
Q ss_pred HHHHHH
Q 044256 354 TLMISF 359 (363)
Q Consensus 354 ~ll~~~ 359 (363)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 776653
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.60 E-value=0.47 Score=33.58 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISN--CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 322 (363)
..|.. .....+.|++++|.+.|+.+...- -+-....-..|+.+|.+.+++++|...+++.++....-...-|-..+.
T Consensus 12 ~ly~~-a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQE-AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHH-HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 34443 444567899999999999998762 122345667889999999999999999999998753222233444444
Q ss_pred HHH
Q 044256 323 ALG 325 (363)
Q Consensus 323 ~~~ 325 (363)
+++
T Consensus 91 gL~ 93 (142)
T PF13512_consen 91 GLS 93 (142)
T ss_pred HHH
Confidence 433
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.57 E-value=0.6 Score=36.86 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN---VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
.|+.-+.. .+.|++..|...|...++.. +-+ ...+--|..++...|++++|..+|..+.+..+. .+.-+..
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~----s~KApda 217 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK----SPKAPDA 217 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC----CCCChHH
Confidence 57777764 57788999999999998863 212 234556889999999999999999999886532 2233567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKG 130 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 130 (363)
+--|..+..+.|+.+.|-..|+++.+.-
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 7788888999999999999999998863
No 253
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.57 E-value=1.1 Score=36.77 Aligned_cols=137 Identities=13% Similarity=0.171 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCC---CCChHHHHHHHHHH
Q 044256 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV---VPETFTCNIFIDGL 254 (363)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~ 254 (363)
++....+++.|.+.|+.-+..+|-+....... .+.++......++ ..+++.|++... .++...+..++..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~-~~~~~~~~~~~ra-----~~iy~~mKk~H~fLTs~~D~~~a~lLA~- 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEE-EEKEDYDEIIQRA-----KEIYKEMKKKHPFLTSPEDYPFAALLAM- 150 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHh-cccccHHHHHHHH-----HHHHHHHHHhCccccCccchhHHHHHhc-
Confidence 34566788899999998888777664443333 2333333333333 366777766543 2344556666544
Q ss_pred HhcCC----HHHHHHHHHHHHhccCcchH--HHHHHHHHHHHhcCC--hHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 044256 255 CKNGH----VLEVMELFPTLEISNCELFV--EIFNSLIRGCCKFGI--FEIASELFNKLSCKNLVADVVAYNILIH 322 (363)
Q Consensus 255 ~~~~~----~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~ 322 (363)
..++ .+.++.+|+.+.+.|+..+- ...+.++..+..... ..++.++++.+.+.|+++....|..+.-
T Consensus 151 -~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 151 -TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred -ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3333 45778888888887765432 333344433332222 4578889999999998888777766544
No 254
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.34 E-value=0.72 Score=33.38 Aligned_cols=81 Identities=12% Similarity=-0.036 Sum_probs=37.3
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 82 (363)
+.+++..+++.+.-. .|..+..-..-...+.+.|++.+|+++|+.+... .|....-..|+..|....+-..-...-
T Consensus 25 ~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~Wr~~A 100 (160)
T PF09613_consen 25 DPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSWRRYA 100 (160)
T ss_pred ChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHHHHHH
Confidence 455555666655543 4433333223333345666666666666666544 233333334444444333333333333
Q ss_pred HHHHh
Q 044256 83 QEMVN 87 (363)
Q Consensus 83 ~~~~~ 87 (363)
+++.+
T Consensus 101 ~evle 105 (160)
T PF09613_consen 101 DEVLE 105 (160)
T ss_pred HHHHh
Confidence 33444
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.29 E-value=0.7 Score=32.98 Aligned_cols=128 Identities=15% Similarity=0.075 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC
Q 044256 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243 (363)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (363)
....++..+...+.......+++.+...+. .+...++.++..|++.++ .+....++. ..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------------------~~~ 68 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------------------KSN 68 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------------------ccc
Confidence 344567777777888888888888877763 566778888888876533 222222220 123
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhc-CChHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF-GIFEIASELFNKLSCKNLVADVVAYNILIH 322 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 322 (363)
......++..|.+.+-++++.-++.++... ... +..+... ++++.|.+++.+- .++..|..++.
T Consensus 69 ~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~-----~~A----l~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~ 133 (140)
T smart00299 69 HYDIEKVGKLCEKAKLYEEAVELYKKDGNF-----KDA----IVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLK 133 (140)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHhhcCH-----HHH----HHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHH
Confidence 334455677777777777877777765321 122 2223333 6777777777652 25667777776
Q ss_pred HHHc
Q 044256 323 ALGK 326 (363)
Q Consensus 323 ~~~~ 326 (363)
.+..
T Consensus 134 ~~l~ 137 (140)
T smart00299 134 ALLD 137 (140)
T ss_pred HHHc
Confidence 6553
No 256
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.27 E-value=0.76 Score=33.26 Aligned_cols=103 Identities=14% Similarity=-0.035 Sum_probs=60.8
Q ss_pred HHHHHHHH---HHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 044256 246 TCNIFIDG---LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322 (363)
Q Consensus 246 ~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 322 (363)
+.+.|+.. -...++.+.+..++..+.-.. |-....-..-...+...|++.+|.++|+++... .|....-..|+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA 85 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHH
Confidence 44444443 346778999999998887653 222333333345567889999999999998776 344444455555
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCHHH
Q 044256 323 ALGKEGQIKKENYLLLSMEENGCALDVDT 351 (363)
Q Consensus 323 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 351 (363)
.|....+-..=...-+++.+.+-.|+...
T Consensus 86 ~CL~~~~D~~Wr~~A~evle~~~d~~a~~ 114 (160)
T PF09613_consen 86 LCLYALGDPSWRRYADEVLESGADPDARA 114 (160)
T ss_pred HHHHHcCChHHHHHHHHHHhcCCChHHHH
Confidence 55443332333334445666544444443
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.22 E-value=0.74 Score=32.85 Aligned_cols=128 Identities=15% Similarity=0.091 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcch
Q 044256 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278 (363)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 278 (363)
....++..+.+.+.......+++.+...+ ..+...++.++..|++.+ ..+....++. ..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-------------~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~ 68 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-------------SENPALQTKLIELYAKYD-PQKEIERLDN------KSN 68 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-------------ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccc
Confidence 34567777777788888887777665432 256678899999998764 4555555552 122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHcc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044256 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE-GQIKKENYLLLSMEENGCALDVDTFNTLMI 357 (363)
Q Consensus 279 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 357 (363)
......++..|.+.+-++++..++.++.. ... .+..+... ++++.|.+++.+- -+...|..++.
T Consensus 69 ~yd~~~~~~~c~~~~l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~ 133 (140)
T smart00299 69 HYDIEKVGKLCEKAKLYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLK 133 (140)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHH
Confidence 33344578888888889899988887643 222 33333333 8888888887752 36778888888
Q ss_pred HHhh
Q 044256 358 SFLQ 361 (363)
Q Consensus 358 ~~~~ 361 (363)
.+..
T Consensus 134 ~~l~ 137 (140)
T smart00299 134 ALLD 137 (140)
T ss_pred HHHc
Confidence 7764
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=2.4 Score=39.20 Aligned_cols=213 Identities=14% Similarity=0.153 Sum_probs=126.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHH----HhcC------------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKM----ATFG------------CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 86 (363)
+....+.++.+|...+++-.=.-+++.. ...+ ..........-+....+...++-|..+-..-
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~- 360 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ- 360 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc-
Confidence 3455677778887777654433333332 2222 0112234556677777888888887765432
Q ss_pred hccCCCCCccCCchhh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch---hhhccCChHHHHHHHHHHHHcCCC
Q 044256 87 NGMGDFGGIYKPNVFC----YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---LLCKKTKLVEANRLLELMMQRGLN 159 (363)
Q Consensus 87 ~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~ 159 (363)
..+... .......+.+.|++++|...|-+-+.. +.|.. -+.......+-..+++.+.+.|+.
T Consensus 361 ----------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla 429 (933)
T KOG2114|consen 361 ----------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA 429 (933)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHHHHHHhcCHHHHHHHHHHHHHHHHcccc
Confidence 223333 333445566789999999888776543 33333 344555666667778888888854
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcC
Q 044256 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239 (363)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 239 (363)
+...-+.|+.+|.+.++.++-.++.+... .|.- ..-....+..+.+.+-.++|..+-.+..
T Consensus 430 -~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~--------------- 490 (933)
T KOG2114|consen 430 -NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK--------------- 490 (933)
T ss_pred -cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc---------------
Confidence 45566788999999999988777766544 2211 1113345555666666666654433321
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271 (363)
Q Consensus 240 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 271 (363)
.+......++ -..+++++|++.+..+.
T Consensus 491 --~he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 491 --KHEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred --cCHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 1222333333 35688899988887764
No 259
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.14 E-value=0.26 Score=31.89 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 044256 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306 (363)
Q Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 306 (363)
++.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444555555555555555555555555555444
No 260
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.10 E-value=1.3 Score=34.85 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=101.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCch
Q 044256 24 DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN---VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNV 100 (363)
Q Consensus 24 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+..|..-+..-.+.|++++|.+.|+.+.... +-+ ..+--.++.++-+.+++++|+..+++....-+ -.||
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP-----~~~n- 106 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP-----THPN- 106 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-----CCCC-
Confidence 3344444555678999999999999999762 222 33455677788899999999999999988652 2233
Q ss_pred hhHHHHHHHHHh-------cCCHHHHH---HHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 044256 101 FCYGSLIDGLCK-------DRLVDQTK---DLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170 (363)
Q Consensus 101 ~~~~~ll~~~~~-------~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (363)
.-|..-|.+.+. .++...+. .-|+++++.- |++ .-...|...+..+...= ...=..+.+
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS-----~Ya~dA~~~i~~~~d~L----A~~Em~Iar 175 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNS-----RYAPDAKARIVKLNDAL----AGHEMAIAR 175 (254)
T ss_pred hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCC-----cchhhHHHHHHHHHHHH----HHHHHHHHH
Confidence 234444444442 23333333 3444444432 222 00111111111111100 000123456
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcH---hHHHHHHHHHHhcCChhHHHHHHHHH
Q 044256 171 GYCLVGKVNVAIALFDSMARKGFMPDV---FSYSVLINGYCKNFNVEEAMNVSREM 223 (363)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (363)
.|.+.|.+..|..-++.|.+. .+-+. ..+-.+..+|...|-.++|...-.-+
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 677788888888888887776 22222 23445666777777777776654444
No 261
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.05 E-value=0.067 Score=27.61 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMA 51 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~ 51 (363)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666777777777666643
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.02 E-value=2.1 Score=37.09 Aligned_cols=149 Identities=13% Similarity=0.079 Sum_probs=86.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhH-------------hc
Q 044256 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK-------------LC 238 (363)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~~ 238 (363)
.-+..+...-++.-++..+. .||-.+.-.++ +--......++.+++++..+.+- ..+..-. ..
T Consensus 178 AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-~~lg~s~~~~~~g~~~e~~~~R 253 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-ASLGKSQFLQHHGHFWEAWHRR 253 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-Hhhchhhhhhcccchhhhhhcc
Confidence 33445555555555555443 23322221111 22234556778888877776652 2222211 11
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCc-cHHH
Q 044256 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA-DVVA 316 (363)
Q Consensus 239 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 316 (363)
...|-..+-..+..++-+.|+.++|++.++++.+.. ...+..+...|+.++...+.+.++..++.+..+...+. -...
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~ 333 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATIC 333 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHH
Confidence 111112223345556668899999999999998653 12245577889999999999999999999986543322 2345
Q ss_pred HHHHHHHH
Q 044256 317 YNILIHAL 324 (363)
Q Consensus 317 ~~~li~~~ 324 (363)
|+..+-.+
T Consensus 334 YTaALLka 341 (539)
T PF04184_consen 334 YTAALLKA 341 (539)
T ss_pred HHHHHHHH
Confidence 66555433
No 263
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.96 E-value=0.0056 Score=44.04 Aligned_cols=130 Identities=12% Similarity=0.038 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHH
Q 044256 28 NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107 (363)
Q Consensus 28 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 107 (363)
..++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++ .. +..-...++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~----------~~yd~~~~~ 77 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS----------NNYDLDKAL 77 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS----------SSS-CTHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc----------cccCHHHHH
Confidence 34677777888899999999999877655667778899999999887788777766 11 113345677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 044256 108 DGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177 (363)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (363)
..|.+.|.++.+.-++.++-...-.... +...++++.|.++... .++...|..++..|...+.
T Consensus 78 ~~c~~~~l~~~a~~Ly~~~~~~~~al~i-~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 78 RLCEKHGLYEEAVYLYSKLGNHDEALEI-LHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHTTTSHHHHHHHHHCCTTHTTCSST-SSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHhcchHHHHHHHHHHcccHHHHHHH-HHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 7788888888888877765432211111 3333444444422221 2345566666666655443
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.93 E-value=0.8 Score=31.71 Aligned_cols=109 Identities=15% Similarity=0.018 Sum_probs=66.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHH---HHHHHhcCChhHH
Q 044256 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL---INGYCKNFNVEEA 216 (363)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a 216 (363)
.|+.+.|++.|.+.+.. .+.....||.-..++.-.|+.++|..=+++..+..-........+. ...|...|+.+.|
T Consensus 56 ~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred ccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 33444444444433332 2446778999999999999999999988887765222233333322 2346678999999
Q ss_pred HHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHH
Q 044256 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251 (363)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 251 (363)
..-|+..-+.| .-|-.+.--.+.|-...+|.++
T Consensus 135 R~DFe~AA~LG--S~FAr~QLV~lNPYAAlCN~ML 167 (175)
T KOG4555|consen 135 RADFEAAAQLG--SKFAREQLVELNPYAALCNQML 167 (175)
T ss_pred HHhHHHHHHhC--CHHHHHHHHhcChHHHHHHHHH
Confidence 88888877766 3343433333445555555544
No 265
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.91 E-value=0.22 Score=32.51 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
+..+-+..+....+.|++.+..+.+.+|.+.+++..|.++|+-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555555555543
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.89 E-value=0.068 Score=27.59 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=20.1
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 316 AYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
+|..|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466778888888888888888888553
No 267
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.63 E-value=0.092 Score=26.54 Aligned_cols=28 Identities=21% Similarity=0.032 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 315 VAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 315 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.+|..+..++...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3455666666666666666666666665
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.58 E-value=3.5 Score=37.47 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=26.1
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMAT 52 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 52 (363)
.| .+..|..+.......-.++.|...|-+...
T Consensus 689 nP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 689 NP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred CC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 67 889999999988888888888888876643
No 269
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.34 E-value=1.3 Score=31.58 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=47.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccH-HHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc--------cCCchhhHHH
Q 044256 35 CMEGNIRDASQLVKKMATFGCRPNVTTC-DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI--------YKPNVFCYGS 105 (363)
Q Consensus 35 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 105 (363)
...++++++..+++.|.-. .|+..-. ..-...+...|+|.+|.++|+++.+.+..++.. .-..-..|..
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 3466667777777666544 4443222 112233456677777777777766654210000 0001223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 044256 106 LIDGLCKDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~~~~ 128 (363)
........+...++..+.+.+..
T Consensus 99 ~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 99 HADEVLARDADADAVALVRALLG 121 (153)
T ss_pred HHHHHHHhCCCHhHHHHHHHHhc
Confidence 45555556666777777777763
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.32 E-value=2.4 Score=34.52 Aligned_cols=217 Identities=13% Similarity=0.046 Sum_probs=116.4
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCcch-------------hhhccC-ChHHHHHHHHHHHHc--------CCCCc-----
Q 044256 111 CKDRLVDQTKDLFMEMKDKG--INANT-------------LLCKKT-KLVEANRLLELMMQR--------GLNPV----- 161 (363)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~--~~~~~-------------~~~~~~-~~~~a~~~~~~~~~~--------~~~~~----- 161 (363)
.+.|+.+.|..++.+..... ..|+. .....+ +++.|...+++..+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777777777766533 22222 234455 777777666655432 12233
Q ss_pred hhhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhc
Q 044256 162 IFTYTPLLNGYCLVGKVN---VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238 (363)
Q Consensus 162 ~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (363)
..++..++.+|...+..+ +|..+++.+... .+-.+..+..-+..+.+.++.+++.+++.+|+..-
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~----------- 151 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV----------- 151 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-----------
Confidence 245666778888777655 455566566443 22234555566677777888899988887776542
Q ss_pred CCCCChHHHHHHHHHHHh--cCCHHHHHHHHHHHHhccCcchHH-HHH-HHHH---HHHhcCC------hHHHHHHHHHh
Q 044256 239 NVVPETFTCNIFIDGLCK--NGHVLEVMELFPTLEISNCELFVE-IFN-SLIR---GCCKFGI------FEIASELFNKL 305 (363)
Q Consensus 239 ~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~-~~~-~li~---~~~~~~~------~~~a~~~~~~~ 305 (363)
......+..++..+.. ......|...+..+....+.|... ... .++. ...+.++ .+...++++.+
T Consensus 152 --~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v 229 (278)
T PF08631_consen 152 --DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV 229 (278)
T ss_pred --ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 1133445555554422 233456666666666554454443 111 1111 1112212 44444555533
Q ss_pred hh-CCCCccHHHHH---HH----HHHHHccCChhHHHHHHHHHH
Q 044256 306 SC-KNLVADVVAYN---IL----IHALGKEGQIKKENYLLLSME 341 (363)
Q Consensus 306 ~~-~~~~~~~~~~~---~l----i~~~~~~g~~~~a~~~~~~m~ 341 (363)
.. .+.+.+..+-. ++ ...+.+.+++++|.++|+-..
T Consensus 230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 32 12233333222 22 234567899999999998654
No 271
>PRK11906 transcriptional regulator; Provisional
Probab=94.31 E-value=1.5 Score=37.78 Aligned_cols=113 Identities=5% Similarity=-0.035 Sum_probs=81.5
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-VTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
...+|.++-+...+. .|.|+.+...+..++.-.++++.|..+|++.... .|| ..+|........-.|+.++|.+.
T Consensus 319 ~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 319 AAQKALELLDYVSDI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456778888888886 7779999999999889999999999999999887 455 44666666667778999999999
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 125 (363)
+++..+..+ .+.-..+....+..|+..+ ++.|.++|-+
T Consensus 395 i~~alrLsP-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQLEP-----RRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHhccCc-----hhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 999877431 1222333444444565544 5666666543
No 272
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.30 E-value=3.3 Score=36.09 Aligned_cols=181 Identities=13% Similarity=0.089 Sum_probs=121.4
Q ss_pred HHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCC
Q 044256 14 FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFG 93 (363)
Q Consensus 14 ~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 93 (363)
|....-.|.|....-+++..+..+..+.-...+..+|+..| .+...|..++.+|... ..+.-..+++++.+..
T Consensus 56 ~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---- 128 (711)
T COG1747 56 IISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---- 128 (711)
T ss_pred HHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc----
Confidence 33334467788888899999999999999999999999875 4667788899999888 5677888888888843
Q ss_pred CccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch---------hh--hccCChHHHHHHHHHHHH-cCCCCc
Q 044256 94 GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---------LL--CKKTKLVEANRLLELMMQ-RGLNPV 161 (363)
Q Consensus 94 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~--~~~~~~~~a~~~~~~~~~-~~~~~~ 161 (363)
-|......-+.-+...++...+...|.+...+-++... -+ .-..+.+..+.+...+.. .|...-
T Consensus 129 ----fnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~ 204 (711)
T COG1747 129 ----FNDVVIGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRG 204 (711)
T ss_pred ----chhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchH
Confidence 34444444444444558888888888888765443111 11 124555666665555543 233333
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 044256 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLING 206 (363)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 206 (363)
...+.-+-..|....++++|++++..+.++.- .|...-..++.-
T Consensus 205 ~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~ 248 (711)
T COG1747 205 SVLMQDVYKKYSENENWTEAIRILKHILEHDE-KDVWARKEIIEN 248 (711)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHH
Confidence 45556666778888899999999997777632 244444444443
No 273
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.29 E-value=0.065 Score=27.26 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=10.2
Q ss_pred cchHHHHHHHHHHHHhcCChHHH
Q 044256 276 ELFVEIFNSLIRGCCKFGIFEIA 298 (363)
Q Consensus 276 ~~~~~~~~~li~~~~~~~~~~~a 298 (363)
|-+...|..+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444444444
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.28 E-value=0.17 Score=25.53 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATF 53 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 53 (363)
.+|..+..++...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 56777888888888888888888887765
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.19 E-value=2.8 Score=34.79 Aligned_cols=127 Identities=10% Similarity=-0.010 Sum_probs=78.4
Q ss_pred hhccCChHHHHHHHHHHHHcC-----CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCcHhHHHH-----
Q 044256 137 LCKKTKLVEANRLLELMMQRG-----LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK----GFMPDVFSYSV----- 202 (363)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~----- 202 (363)
....+.++++++.|+...+.- ......+|..|.+.|.+..|+++|.-+.....+. ++..-...|..
T Consensus 132 hlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh 211 (518)
T KOG1941|consen 132 HLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH 211 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH
Confidence 344555666666666554421 1223567888999999999999988776654332 32221222332
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ETFTCNIFIDGLCKNGHVLEVMELFPTLE 271 (363)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 271 (363)
+.-++...|+..+|.+.-++..+.. ...|-.+ .......+.+.|...|+.+.|+.-|+...
T Consensus 212 maValR~~G~LgdA~e~C~Ea~kla--------l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKLA--------LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHH--------HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3335667888888887777665443 2223222 23345667788999999999888877653
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.15 E-value=2.6 Score=34.31 Aligned_cols=216 Identities=10% Similarity=-0.002 Sum_probs=120.9
Q ss_pred ChhhhhHHHHHHHHHHcC--CCCCc----hhhHHHHHHHHHhcC-CHHHHHHHHHHHHhc--------CCCCCc-----c
Q 044256 1 TSKVLGALMAFGSFIRRC--YRPLN----DVTFNSLIKGFCMEG-NIRDASQLVKKMATF--------GCRPNV-----T 60 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~--~~p~~----~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~--------~~~~~~-----~ 60 (363)
.||++.|.-++.++.... ..|.. ...+..+.......+ +++.|..++++..+. ...|+. .
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 478999999999887643 22311 112222333345566 888888877765433 122332 2
Q ss_pred cHHHHHHHHHhcCChh---HHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch--
Q 044256 61 TCDTLITGLRRTGNMN---LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-- 135 (363)
Q Consensus 61 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 135 (363)
++..++.++...+..+ +|..+++.+.... +..+.++-.-+..+.+.++.+.+.+.+.+|...-..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~ 158 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF 158 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH
Confidence 4566778887777654 5566666665432 333566667778888899999999999999987543433
Q ss_pred -------hhhccCChHHHHHHHHHHHHcCCCCchh-hH-HHHHH---HHHhcCC------HHHHHHHHHHHHHc-CCCCc
Q 044256 136 -------LLCKKTKLVEANRLLELMMQRGLNPVIF-TY-TPLLN---GYCLVGK------VNVAIALFDSMARK-GFMPD 196 (363)
Q Consensus 136 -------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~li~---~~~~~~~------~~~a~~~~~~~~~~-~~~~~ 196 (363)
..........+...++.++...+.|... .. ..++. ...+.++ .+....+++...+. +.+.+
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 1123344456666666666554444443 11 11111 1112222 44444555533332 22333
Q ss_pred HhHHHHH---H----HHHHhcCChhHHHHHHHHH
Q 044256 197 VFSYSVL---I----NGYCKNFNVEEAMNVSREM 223 (363)
Q Consensus 197 ~~~~~~l---~----~~~~~~~~~~~a~~~~~~~ 223 (363)
..+-.++ + ..+.+.++++.|.+.++-.
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3333322 2 2356788999998777643
No 277
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.12 E-value=0.19 Score=25.26 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATF 53 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 53 (363)
..|..+..++...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46777788888888888888888887765
No 278
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=2.5 Score=33.97 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=45.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 66 ITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 128 (363)
.......|++.+|..+|....+.. +.+...--.++.+|...|+.+.|..++..+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 345567889999999999988865 55567778888999999999999999988754
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.06 E-value=1.1 Score=33.57 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcch--HHHHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCccHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF--VEIFNSLIRGCCKFGIFEIASELFNKLSCK---NLVADVVAYNI 319 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 319 (363)
..+..+...|++.|+.+.|++.|.++.+....+. ...+..+|......+++..+...+.++... +-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677889999999999999999999987754443 446678888999999999999998887653 21122211111
Q ss_pred HHH--HHHccCChhHHHHHHHHHHH
Q 044256 320 LIH--ALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 320 li~--~~~~~g~~~~a~~~~~~m~~ 342 (363)
... .+...+++.+|-+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 33457899999888877653
No 280
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=2.3 Score=33.18 Aligned_cols=216 Identities=10% Similarity=-0.032 Sum_probs=107.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhH
Q 044256 24 DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCY 103 (363)
Q Consensus 24 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (363)
...|..-..+|....++++|...+.+..+- .+.|...|+. . ..++.|.-+.+++.. ++--+..|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-A------KayEqaamLake~~k--------lsEvvdl~ 94 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-A------KAYEQAAMLAKELSK--------LSEVVDLY 94 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-H------HHHHHHHHHHHHHHH--------hHHHHHHH
Confidence 344666666677777777777766665532 1333332321 2 223444455555544 22234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 044256 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183 (363)
Q Consensus 104 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 183 (363)
+.....|..+|.++.|-..+++.-+. ....++++|++++.+. +......++...|..
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~--------lenv~Pd~AlqlYqra---------------lavve~~dr~~ma~e 151 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKA--------LENVKPDDALQLYQRA---------------LAVVEEDDRDQMAFE 151 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHH--------hhcCCHHHHHHHHHHH---------------HHHHhccchHHHHHH
Confidence 55666677777766666666554331 1122222333332221 111112222222222
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCCh-HHHHHHHHHHHhcCCHHH
Q 044256 184 LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET-FTCNIFIDGLCKNGHVLE 262 (363)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~ 262 (363)
+ +...-..+.+..++++|-..+.+-. .+...... -++. ..|...|-.+....++..
T Consensus 152 l---------------~gk~sr~lVrl~kf~Eaa~a~lKe~-----~~~~~~~~---y~~~~k~~va~ilv~L~~~Dyv~ 208 (308)
T KOG1585|consen 152 L---------------YGKCSRVLVRLEKFTEAATAFLKEG-----VAADKCDA---YNSQCKAYVAAILVYLYAHDYVQ 208 (308)
T ss_pred H---------------HHHhhhHhhhhHHhhHHHHHHHHhh-----hHHHHHhh---cccHHHHHHHHHHHHhhHHHHHH
Confidence 2 3333345566666666654443321 11111111 1222 234555556666778999
Q ss_pred HHHHHHHHHhcc---CcchHHHHHHHHHHHHhcCChHHHHHHH
Q 044256 263 VMELFPTLEISN---CELFVEIFNSLIRGCCKFGIFEIASELF 302 (363)
Q Consensus 263 a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~ 302 (363)
|...++.-.+.+ -+-+..+...|+.+|- .|+.+++..++
T Consensus 209 aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 209 AEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 999998854332 2345667778888765 57777766654
No 281
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=5.1 Score=36.70 Aligned_cols=87 Identities=9% Similarity=0.059 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (363)
.+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+... .+.-|.-.+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 345555666778899999999888766 6788899888999999999998877766554 245567788899
Q ss_pred HccCChhHHHHHHHHHH
Q 044256 325 GKEGQIKKENYLLLSME 341 (363)
Q Consensus 325 ~~~g~~~~a~~~~~~m~ 341 (363)
.+.|+.++|.+++-+..
T Consensus 755 ~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HhcccHHHHhhhhhccC
Confidence 99999999999887664
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.73 E-value=0.8 Score=34.23 Aligned_cols=64 Identities=8% Similarity=-0.047 Sum_probs=45.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 61 TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 61 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 128 (363)
.+..+...|.+.|+.+.|.+.|.++.+.... ...-...+-.+|+.....+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~----~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTS----PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5667778888888888888888887765410 122245566777778888888888877777654
No 283
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.69 E-value=7.3 Score=37.84 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=7.8
Q ss_pred hcCCHHHHHHHHHHHH
Q 044256 112 KDRLVDQTKDLFMEMK 127 (363)
Q Consensus 112 ~~~~~~~a~~~~~~~~ 127 (363)
.+.|+.+-+.+++++.
T Consensus 863 SqkDPkEyLP~L~el~ 878 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELK 878 (1265)
T ss_pred hccChHHHHHHHHHHh
Confidence 3444555555555544
No 284
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.68 E-value=0.18 Score=25.28 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=15.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 316 AYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.|..+..++...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555666666666666666555
No 285
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.66 E-value=4.5 Score=35.27 Aligned_cols=146 Identities=15% Similarity=0.161 Sum_probs=83.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCCh
Q 044256 65 LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN-VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143 (363)
Q Consensus 65 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 143 (363)
++.-.-+..+.+.-.+.-.+..+ +.|| ...|..| +--......++.+++++..+.+-.. +.+....
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--------i~pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~~---lg~s~~~ 240 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--------INPDCADAYILL--AEEEASTIVEAEELLRQAVKAGEAS---LGKSQFL 240 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--------hhhhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHHHh---hchhhhh
Confidence 34444455555555555556655 3343 2333322 2223556788999998877653211 0010011
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 044256 144 VEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM-PDVFSYSVLINGYCKNFNVEEAMNVSRE 222 (363)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (363)
+..-...+....+...|-..+-..+..++.+.|+.++|++.+++|.+.... ........|+.++...+.+.++..++.+
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111112222222333333444455677778899999999999999865322 2334677899999999999999887766
Q ss_pred H
Q 044256 223 M 223 (363)
Q Consensus 223 ~ 223 (363)
-
T Consensus 321 Y 321 (539)
T PF04184_consen 321 Y 321 (539)
T ss_pred h
Confidence 4
No 286
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=2 Score=34.89 Aligned_cols=103 Identities=12% Similarity=0.023 Sum_probs=70.3
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHH
Q 044256 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN---CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315 (363)
Q Consensus 239 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (363)
|.+....+...++..-....+++.++..+-++.... ..|+...+ ..++.+ -.-++++++.++..=...|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 444555566666666566677888888777765431 12222221 222322 2346778888888888889999999
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 316 AYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
+++.+++.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999988888877655
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.37 E-value=0.67 Score=30.03 Aligned_cols=63 Identities=8% Similarity=0.208 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHH
Q 044256 39 NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108 (363)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 108 (363)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+.++..- ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-------~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-------GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cCchhhHHHHHH
Confidence 444566677777777888999999999999999999999999999887542 334456665553
No 288
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.34 E-value=2.4 Score=31.17 Aligned_cols=136 Identities=12% Similarity=0.047 Sum_probs=85.2
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHH
Q 044256 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261 (363)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 261 (363)
.+.++.+.+.+++|+...+..++..+.+.|++.....+ ...++-+|.......+-.+.. ...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----------------lq~~Vi~DSk~lA~~LLs~~~--~~~ 75 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----------------LQYHVIPDSKPLACQLLSLGN--QYP 75 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----------------HhhcccCCcHHHHHHHHHhHc--cCh
Confidence 34566667788999999999999999999987665433 444566776655544433322 223
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 044256 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341 (363)
Q Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 341 (363)
.+.++=-.|.+.= ...+..++..+...|++-+|.++.+...... ......++.+..+.+|...-..+++-..
T Consensus 76 ~~~Ql~lDMLkRL----~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 76 PAYQLGLDMLKRL----GTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHHHHh----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344333333220 1134567778888999999999988764432 2222446677777777776666666665
Q ss_pred Hc
Q 044256 342 EN 343 (363)
Q Consensus 342 ~~ 343 (363)
+.
T Consensus 148 ~~ 149 (167)
T PF07035_consen 148 ER 149 (167)
T ss_pred Hh
Confidence 54
No 289
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.33 E-value=4.8 Score=34.62 Aligned_cols=78 Identities=8% Similarity=0.069 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CcccHHHHHHHHHhcCChhHHHHHHH
Q 044256 8 LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRP----NVTTCDTLITGLRRTGNMNLTLKLHQ 83 (363)
Q Consensus 8 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~ 83 (363)
.++++.+....+.|...-....+...+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45555556666677444444555554444 6677777776665442222 23578888999999999999999998
Q ss_pred HHHh
Q 044256 84 EMVN 87 (363)
Q Consensus 84 ~~~~ 87 (363)
-+..
T Consensus 323 lL~~ 326 (549)
T PF07079_consen 323 LLKI 326 (549)
T ss_pred HHHh
Confidence 7776
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.29 E-value=2.1 Score=30.50 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=38.0
Q ss_pred HhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044256 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
...++++++..++..+.-.. |-....-..-...+...|++.+|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34788999999988887653 2222333333445678899999999999998764
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.25 E-value=4.5 Score=34.14 Aligned_cols=66 Identities=17% Similarity=-0.009 Sum_probs=50.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc---hHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL---FVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
....++..+...+.+.|+++.|...+..+...+... .+.+...-+......|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345578888899999999999999999988654111 344555566777788999999998887776
No 292
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.24 E-value=4 Score=33.49 Aligned_cols=136 Identities=12% Similarity=0.135 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCcHhHHHHHHHHHHhcCChhHHHH
Q 044256 148 RLLELMMQRGLNPVIFTYTPLLNGYCL--VG----KVNVAIALFDSMARKGF---MPDVFSYSVLINGYCKNFNVEEAMN 218 (363)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 218 (363)
.+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|.+... .++...+..++.. ..++ ...
T Consensus 83 ~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~---~e~ 157 (297)
T PF13170_consen 83 DIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED---VEE 157 (297)
T ss_pred HHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc---HHH
Confidence 344555556666666565543333322 22 35578999999998732 3455566666543 3333 333
Q ss_pred HHHHHHHhhHHHHHHHhHhcCCCCChH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcC
Q 044256 219 VSREMILNGFKKIFNEMKLCNVVPETF--TCNIFIDGLCKNGH--VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG 293 (363)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 293 (363)
+.+++ +.+++.+...|...+.. ..+.++..+-.... ..++.++++.+.+.++++....|..+.-...-.+
T Consensus 158 l~~~~-----E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~ 231 (297)
T PF13170_consen 158 LAERM-----EQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLED 231 (297)
T ss_pred HHHHH-----HHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCC
Confidence 33444 46677777777765543 34444443333222 4588899999999999888777776654443333
No 293
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.24 E-value=3.4 Score=32.59 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=44.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 110 LCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189 (363)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 189 (363)
-.+.|++++|.+.|+.+....+- -+-...+.-.++-++.+.++++.|+..+++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~-------------------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPF-------------------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCC-------------------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34566677777666666654211 01224455566778888999999999999887
Q ss_pred HcCCCCcHhHHHHHHHHHH
Q 044256 190 RKGFMPDVFSYSVLINGYC 208 (363)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~ 208 (363)
..-......-|..-|.+++
T Consensus 99 ~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 99 RLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhCCCCCChhHHHHHHHHH
Confidence 7632223334444444443
No 294
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.09 E-value=0.6 Score=30.60 Aligned_cols=60 Identities=8% Similarity=0.223 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHH
Q 044256 42 DASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108 (363)
Q Consensus 42 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 108 (363)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++..- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-------~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-------GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cChHHHHHHHHH
Confidence 566677777777888999999999999999999999999999888753 333446776654
No 295
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.09 E-value=2.1 Score=29.83 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 044256 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346 (363)
Q Consensus 279 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 346 (363)
.......+......|+-++-.+++..+...+ .+++.....+..+|.+.|+..++.+++++.-+.|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4455667788889999999999999987643 678888899999999999999999999999998874
No 296
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.77 E-value=7.3 Score=35.22 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 044256 27 FNSLIKGFCMEGN--IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84 (363)
Q Consensus 27 ~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 84 (363)
++..=.+|.+-.+ +-+.+.-++++.++|-.|+.. .+...++-.|++.+|-++|.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHH
Confidence 3444445544443 334444456677777667754 344566677788888777754
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.75 E-value=1.2 Score=33.66 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCcccHHHHHHHHHhcCChhHHH
Q 044256 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF---GCRPNVTTCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 5 ~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 79 (363)
+.|.+.|-.+...+.-- ++.....|...|. ..+.++++.++.+.++. +-.+|+..+.+|.+.+.+.++++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~-t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELE-TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCC-CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 57888888887776655 7777777777666 67788999988887764 23567888999999999999888774
No 298
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.39 E-value=8.4 Score=35.04 Aligned_cols=183 Identities=16% Similarity=0.067 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHH--HH-HHhcCCHHHHHHHHHHHHH-------cCCCCcHhHHHHHHHHHHhcC-
Q 044256 143 LVEANRLLELMMQRGLNPVIFTYTPLL--NG-YCLVGKVNVAIALFDSMAR-------KGFMPDVFSYSVLINGYCKNF- 211 (363)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 211 (363)
...+.++++.....|.. .......++ .+ +....|.+.|+.+|+...+ .| .+....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 56788888888777621 112222222 22 3456789999999998876 44 3334555666666543
Q ss_pred ----ChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhccCcchHHHHHHHH
Q 044256 212 ----NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK-NGHVLEVMELFPTLEISNCELFVEIFNSLI 286 (363)
Q Consensus 212 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 286 (363)
+.+.|..++.+....+ .|+....-..+.-... ..+...|.++|....+.|.. ....+..++
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-------------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~ 369 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-------------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALC 369 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-------------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHH
Confidence 5666887777766654 2454433222222222 24578999999999988833 333333322
Q ss_pred HHHH--hcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 044256 287 RGCC--KFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345 (363)
Q Consensus 287 ~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 345 (363)
-... ...+...|..++.+..+.| .|....-...+..+.. ++++.+.-.+..+.+.|.
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 2222 3357889999999998887 3332222233334444 777777777766666554
No 299
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.38 E-value=2 Score=31.78 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHcCCCCCchhhHHHHHHHH---HhcCCHHHHHHHHHHHHhc-----CCCCCc-ccHHHHHHHHHhcC-
Q 044256 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGF---CMEGNIRDASQLVKKMATF-----GCRPNV-TTCDTLITGLRRTG- 73 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~-----~~~~~~-~~~~~l~~~~~~~~- 73 (363)
++.|.+..+..... .|.|+..++.-..++ ++..+..++..++++..+. .+.|+- .++..+..++...+
T Consensus 7 FE~ark~aea~y~~--nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 56677777776665 676777665555544 4444434454444443321 235664 56666666665433
Q ss_pred ----------ChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044256 74 ----------NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131 (363)
Q Consensus 74 ----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 131 (363)
.+++|...|+.... ..|+...|+.-+.... +|-++..++.+.+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~--------~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVD--------EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH--------H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 25677777777777 5799999998887764 45667777766543
No 300
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.33 E-value=0.97 Score=36.99 Aligned_cols=100 Identities=13% Similarity=-0.035 Sum_probs=71.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChh
Q 044256 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331 (363)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 331 (363)
.-|.++|.+++|+..|....... +.|+.++..-..+|.+...+..|..-.......+ ..-...|..-..+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 34788999999999999887664 5588888888889999999988888777766543 222344555555555567777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH
Q 044256 332 KENYLLLSMEENGCALDVDTFNTL 355 (363)
Q Consensus 332 ~a~~~~~~m~~~g~~p~~~~~~~l 355 (363)
+|.+-++..++ +.|+...+...
T Consensus 183 EAKkD~E~vL~--LEP~~~ELkK~ 204 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPKNIELKKS 204 (536)
T ss_pred HHHHhHHHHHh--hCcccHHHHHH
Confidence 77777777776 67775554443
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.18 E-value=6.4 Score=33.23 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=48.8
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044256 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP---DVFSYSVLINGYCKNFNVEEAMNVSREMIL 225 (363)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (363)
....+|..+...+.+.|.++.|...+..+...+..+ ++.....-.+..-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888999999999999999999988753211 333444445556678999999988877765
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.05 E-value=0.47 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMAT 52 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 52 (363)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666777777777777777666543
No 303
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.98 E-value=7.9 Score=33.81 Aligned_cols=80 Identities=9% Similarity=-0.101 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCChhHHHHHHHHH
Q 044256 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG-LRRTGNMNLTLKLHQEM 85 (363)
Q Consensus 7 A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~ 85 (363)
...+|..+..+ .+.|+..|...+..+.+.+.+.+.-.+|.+|+... +.++..|.....- |-...+.+.|..+|...
T Consensus 90 Iv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 90 IVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 34566666655 44499999999999888888999999999999873 3344555433322 33334588899988888
Q ss_pred Hhcc
Q 044256 86 VNGM 89 (363)
Q Consensus 86 ~~~~ 89 (363)
....
T Consensus 167 LR~n 170 (568)
T KOG2396|consen 167 LRFN 170 (568)
T ss_pred hhcC
Confidence 7743
No 304
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.74 E-value=0.46 Score=23.52 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044256 27 FNSLIKGFCMEGNIRDASQLVKKMATF 53 (363)
Q Consensus 27 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 53 (363)
+-.+..++.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445566677777788888888777765
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.46 E-value=0.55 Score=24.81 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 315 VAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 315 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777888888888888888887765
No 306
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.27 E-value=0.39 Score=24.10 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=15.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 316 AYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555556666666666666666554
No 307
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.04 E-value=5.8 Score=30.48 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 044256 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNG 227 (363)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (363)
+.||--+.+-+...|+.++|..+|+-.+...
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3567777788889999999998888776654
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.88 E-value=10 Score=33.00 Aligned_cols=113 Identities=10% Similarity=0.028 Sum_probs=69.9
Q ss_pred hcCCHHHHH-HHHHHHHHcCCCcch------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 044256 112 KDRLVDQTK-DLFMEMKDKGINANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184 (363)
Q Consensus 112 ~~~~~~~a~-~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 184 (363)
..|++-.|- +++..+......|.. .....|+++.+.+.+...... +.....+..++++...+.|+++.|..+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 445554443 344444444444443 445677777777776554432 234456788889999999999999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 044256 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226 (363)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (363)
-..|....+. +...........-..|-++++...++++...
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 8888877654 3333332222334567778888777776543
No 309
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=3 Score=33.89 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=64.9
Q ss_pred cCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---Ccch------hhhccCChHHHHHHHHHHHHcCCCCchhhHH
Q 044256 96 YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI---NANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYT 166 (363)
Q Consensus 96 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (363)
.+....+-..++..-....+++.+...+-+++...- .++. .++-.-++++++.++..-++.|+-||..+++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhHH
Confidence 455566666666666667888888888877765321 1111 3344556667777777777778888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 167 PLLNGYCLVGKVNVAIALFDSMARK 191 (363)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~ 191 (363)
.+|+.+.+.+++..|..+.-.|...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888877777766655443
No 310
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.56 E-value=9.2 Score=31.95 Aligned_cols=153 Identities=10% Similarity=0.028 Sum_probs=99.1
Q ss_pred HHHHHHcCCCCCchhhHHHHHHHHHhcC------------CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHH
Q 044256 11 FGSFIRRCYRPLNDVTFNSLIKGFCMEG------------NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLT 78 (363)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~li~~~~~~~------------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 78 (363)
|++..+. .|.|..+|-.++..--..- -.+.-+.++++.++.+ +.+...+..++..+.+..+.+..
T Consensus 8 l~~~v~~--~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 8 LNRRVRE--NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 3444444 7778999999987543321 1456678899988874 34555667788888888888999
Q ss_pred HHHHHHHHhccCCCCCccCCchhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHH
Q 044256 79 LKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK---DRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ 155 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 155 (363)
.+.++++.... +-+...|...|..... .-.++....+|.+..+. +.....
T Consensus 85 ~~~we~~l~~~-------~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~--------------------L~~~~~ 137 (321)
T PF08424_consen 85 AKKWEELLFKN-------PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA--------------------LSRRRS 137 (321)
T ss_pred HHHHHHHHHHC-------CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH--------------------HHHhhc
Confidence 99999999864 4568888888876654 23466777777665542 111111
Q ss_pred cC---CCCch-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044256 156 RG---LNPVI-------FTYTPLLNGYCLVGKVNVAIALFDSMARKGF 193 (363)
Q Consensus 156 ~~---~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 193 (363)
.. ..+.. ..+.-+...+..+|..+.|..+++.+.+.++
T Consensus 138 ~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 138 GRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 00 01111 2233334445578999999999999888754
No 311
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.49 E-value=2.9 Score=32.03 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 044256 248 NIFIDGLCKNGHVLEVMELFPTL 270 (363)
Q Consensus 248 ~~ll~~~~~~~~~~~a~~~~~~~ 270 (363)
..+++.++-.|++++|..-++-.
T Consensus 39 hflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 39 HFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred hHHHHHHhhcchHHHHHHHHHHH
Confidence 33444555555555555444433
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.48 E-value=3.6 Score=31.20 Aligned_cols=79 Identities=14% Similarity=-0.048 Sum_probs=58.7
Q ss_pred HHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCccHHHHHHHHHHHHccCCh
Q 044256 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK---NLVADVVAYNILIHALGKEGQI 330 (363)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~ 330 (363)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 678888877777765556666666666665 67889999988887753 3367889999999999999998
Q ss_pred hHHH
Q 044256 331 KKEN 334 (363)
Q Consensus 331 ~~a~ 334 (363)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 313
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.45 E-value=0.59 Score=25.40 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=12.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh
Q 044256 285 LIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 285 li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555554
No 314
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.42 E-value=5.6 Score=29.28 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHH
Q 044256 10 AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRD 42 (363)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~ 42 (363)
....+.+.++.| ++..|..+++.+.+.|++..
T Consensus 16 YirSl~~~~i~~-~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPV-QHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 334444555555 55566666666666665444
No 315
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.30 E-value=6.9 Score=30.11 Aligned_cols=182 Identities=14% Similarity=-0.009 Sum_probs=103.3
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCCCccCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhcc
Q 044256 69 LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN-VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKK 140 (363)
Q Consensus 69 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ 140 (363)
|-..|-+..|.--|.+... +.|+ +.+||-|.-.+...|+++.|.+.|+...+.++.-+- .+.-.
T Consensus 75 YDSlGL~~LAR~DftQaLa--------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 146 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec
Confidence 3445556666666666666 3444 778999999999999999999999999887655443 33456
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHH
Q 044256 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD-SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219 (363)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 219 (363)
|++.-|.+-+-+.-+.+ |+..--...+-.--..-++.+|..-+. +.... |..-|...|-.|.- |+..+ ..+
T Consensus 147 gR~~LAq~d~~~fYQ~D--~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS~-e~l 218 (297)
T COG4785 147 GRYKLAQDDLLAFYQDD--PNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKISE-ETL 218 (297)
T ss_pred CchHhhHHHHHHHHhcC--CCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhccH-HHH
Confidence 78888888777776664 221111112222223445666655443 33332 44445443333321 22111 111
Q ss_pred HHHHHHhhH--HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 044256 220 SREMILNGF--KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274 (363)
Q Consensus 220 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 274 (363)
++++....- ..+-+ .=+.||-.+...+...|+.++|..+|+-.+..+
T Consensus 219 ~~~~~a~a~~n~~~Ae--------~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 219 MERLKADATDNTSLAE--------HLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHhhccchHHHHH--------HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 222111100 00000 113467777788888888888888888877654
No 316
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=90.17 E-value=3.1 Score=28.64 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 044256 267 FPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306 (363)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 306 (363)
+..+....+.|++.+...-+++|.+.+|+..|.++|+-+.
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333334444555555555555555555555555554444
No 317
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.10 E-value=8.8 Score=31.01 Aligned_cols=171 Identities=12% Similarity=0.060 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhH---------------hcCCCC
Q 044256 178 VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK---------------LCNVVP 242 (363)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 242 (363)
..+|+++|.-+.++. --..+-..++.++-...+..+|...+...+-+= ...++.+. -.++..
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyql-RKaLs~L~~ne~vts~d~~Ykld~~~~k~ 225 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQL-RKALSRLNANEAVTSQDRKYKLDAGLPKY 225 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHH-HHHhchhccCceEEEcCCceEEecCCccc
Confidence 356788887777662 123444556666666666667766665543211 11111111 123344
Q ss_pred ChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhccCc----------------chHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044256 243 ETFTCNIFIDGLCK-NGHVLEVMELFPTLEISNCE----------------LFVEIFNSLIRGCCKFGIFEIASELFNKL 305 (363)
Q Consensus 243 ~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 305 (363)
|..-|...+..... .-.++++.++.......-++ .-..+++.....|..+|.+.+|.++.+..
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 55555555544332 23355555555544321111 01223455567889999999999999999
Q ss_pred hhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCCCHHHH
Q 044256 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE-----NGCALDVDTF 352 (363)
Q Consensus 306 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~ 352 (363)
...+ +.+...|-.++..+...|+--.|.+-++++-+ .|+..+...+
T Consensus 306 ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 306 LTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred hhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 9875 67888999999999999998888888887753 2776665543
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.09 E-value=3 Score=34.30 Aligned_cols=92 Identities=15% Similarity=0.055 Sum_probs=66.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHH
Q 044256 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFN 283 (363)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 283 (363)
.-|.+.|.+++|++++.+.+... | +.+++..-..+|.+...+..|+.-....+..+ ..-...|+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~--------------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYS 169 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY--------------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYS 169 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC--------------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHH
Confidence 34788999999999988766543 5 78888888899999999988887777666544 23344555
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCcc
Q 044256 284 SLIRGCCKFGIFEIASELFNKLSCKNLVAD 313 (363)
Q Consensus 284 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (363)
.-+.+-...|+..+|.+-++..++. .|+
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhh--Ccc
Confidence 5555555667777777777777665 455
No 319
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.09 E-value=4.8 Score=29.89 Aligned_cols=75 Identities=17% Similarity=0.143 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHhcC----C-------hHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCCh
Q 044256 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFG----I-------FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330 (363)
Q Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 330 (363)
+|+.-|++.+..+ |-...++..+..+|...+ + +++|...|++.... .|+..+|+.-+...
T Consensus 53 dAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------ 123 (186)
T PF06552_consen 53 DAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------ 123 (186)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------
T ss_pred HHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------
Confidence 3444444444443 333467777777776543 2 45555555555554 68888888777765
Q ss_pred hHHHHHHHHHHHcCC
Q 044256 331 KKENYLLLSMEENGC 345 (363)
Q Consensus 331 ~~a~~~~~~m~~~g~ 345 (363)
++|-++..++.+.+.
T Consensus 124 ~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 AKAPELHMEIHKQGL 138 (186)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HhhHHHHHHHHHHHh
Confidence 347777777766543
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.90 E-value=0.11 Score=37.39 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=64.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccH--------HHHHHHH
Q 044256 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV--------VAYNILI 321 (363)
Q Consensus 250 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~li 321 (363)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... ..++. ..|...+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cCHHHHHHHHHhcchHHHHH
Confidence 4566667778888888888888665455677788888888888777777777763222 11111 1233333
Q ss_pred HHHHccCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHhhc
Q 044256 322 HALGKEGQIKKENYLLLSMEEN-------GCALDVDTFNTLMISFLQK 362 (363)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~ 362 (363)
..|.+.|++++|..++..+..- .-.++...|..++..|..+
T Consensus 91 ~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~ 138 (143)
T PF00637_consen 91 YLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDS 138 (143)
T ss_dssp HHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTS
T ss_pred HHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4455555555555432222211 1135677888888877654
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.86 E-value=4.1 Score=31.27 Aligned_cols=79 Identities=15% Similarity=0.084 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHH
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS 105 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (363)
+.+..++.+.+.++..+++...+.-.+.+ +.|...-..+++.++-.|+|++|..-++..-+.... ..+-...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~----~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ----DTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc----cchHHHHHHH
Confidence 34556677788889999999888777663 445667788899999999999998877766653210 2333556666
Q ss_pred HHHH
Q 044256 106 LIDG 109 (363)
Q Consensus 106 ll~~ 109 (363)
+|++
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 6654
No 322
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.85 E-value=7.6 Score=29.92 Aligned_cols=182 Identities=15% Similarity=0.042 Sum_probs=89.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhc-cCCCCCccCCchhhHHHHHHHHHhcC
Q 044256 37 EGNIRDASQLVKKMATFGCRP-NVTTCDTLITGLRRTGNMNLTLKLHQEMVNG-MGDFGGIYKPNVFCYGSLIDGLCKDR 114 (363)
Q Consensus 37 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~ 114 (363)
.+....+...+.......... ....+......+...+.+..+...+...... . .......+......+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELEL------LPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh------ccchHHHHHHHHHHHHHHh
Confidence 355556666666655442110 2345566666677777777777777766642 1 2444556666666666677
Q ss_pred CHHHHHHHHHHHHHcCCCcch--------hhhccCChHHHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCCHHHHHHH
Q 044256 115 LVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGL--NPVIFTYTPLLNGYCLVGKVNVAIAL 184 (363)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 184 (363)
.+..+...+.........+.. .+...++++.+...+........ ......+......+...++.+.+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 777777777776654332211 23344444444444444422110 01112222222223444555555555
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 044256 185 FDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224 (363)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (363)
+..............+..+...+...++++.+...+....
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 229 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKAL 229 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 5555443111023344444444555555555554444443
No 323
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.71 E-value=11 Score=31.54 Aligned_cols=47 Identities=9% Similarity=0.160 Sum_probs=22.5
Q ss_pred hcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHH
Q 044256 71 RTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKD 121 (363)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 121 (363)
...+.++|+..+......-.+ ...-..++..+..+.++.|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~----~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSD----LMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHH----HHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344555555555544432200 11123455556666666666665543
No 324
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.59 E-value=5.6 Score=30.14 Aligned_cols=90 Identities=6% Similarity=0.022 Sum_probs=54.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcc------cHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHH
Q 044256 31 IKGFCMEGNIRDASQLVKKMATFGCRPNVT------TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYG 104 (363)
Q Consensus 31 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (363)
..-+.++|++++|..-|...+.. -|... .|..-..++.+.+.++.|+.--...++.+ +.......
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-------pty~kAl~ 172 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-------PTYEKALE 172 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-------chhHHHHH
Confidence 34466778888888888877765 23322 23334455667777777777777776643 11122222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 105 SLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
.-..+|.+...++.|+.-|.++.+.
T Consensus 173 RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3344566667777777777776654
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.41 E-value=1.3 Score=22.01 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATF 53 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 53 (363)
.+|..+...|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35666666677777777777777666543
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.18 E-value=7 Score=29.66 Aligned_cols=94 Identities=17% Similarity=-0.012 Sum_probs=66.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCcch-----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHcc
Q 044256 253 GLCKNGHVLEVMELFPTLEISNCELF-----VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327 (363)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 327 (363)
-+.+.|++++|..-|...+..- ++. ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 3567899999999998888663 332 2334444556778888999988888888764 22334444445678888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH
Q 044256 328 GQIKKENYLLLSMEENGCALDVD 350 (363)
Q Consensus 328 g~~~~a~~~~~~m~~~g~~p~~~ 350 (363)
..+++|+.-|+.+++ ..|...
T Consensus 182 ek~eealeDyKki~E--~dPs~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE--SDPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHH--hCcchH
Confidence 999999999999988 455554
No 327
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.63 E-value=16 Score=32.14 Aligned_cols=166 Identities=12% Similarity=0.027 Sum_probs=104.6
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhc
Q 044256 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238 (363)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (363)
+.|.....+++..+...-.+.-++.+..+|...| .+...|..++++|..+ ..++-..+++++.+.+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df---------- 129 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF---------- 129 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc----------
Confidence 4566677788888888888888888888888874 4677888889988887 55667777777666541
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc-----hHHHHHHHHHHHHhcCChHHHHHHHHHhhh-CCCCc
Q 044256 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL-----FVEIFNSLIRGCCKFGIFEIASELFNKLSC-KNLVA 312 (363)
Q Consensus 239 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~ 312 (363)
.|++.-..|...| ..++...+...|.++...-++. -...|.-|... -..+.+....+...+.. .|...
T Consensus 130 ---nDvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~ 203 (711)
T COG1747 130 ---NDVVIGRELADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGR 203 (711)
T ss_pred ---hhHHHHHHHHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccch
Confidence 2333333344444 3477777777777776543221 11234444332 13456666666666654 23344
Q ss_pred cHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 313 DVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 313 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
-...+..+-.-|....++++|++++...++.
T Consensus 204 ~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 204 GSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 4555666666677777777777777755543
No 328
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.14 E-value=10 Score=29.17 Aligned_cols=225 Identities=18% Similarity=0.028 Sum_probs=127.3
Q ss_pred cCChhHHHHHHHHHHhccCCCCCccC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHH
Q 044256 72 TGNMNLTLKLHQEMVNGMGDFGGIYK-PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLL 150 (363)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 150 (363)
.+....+...+....... .. .....+......+...+.+..+...+.......
T Consensus 36 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 89 (291)
T COG0457 36 LGELAEALELLEEALELL------PNSDLAGLLLLLALALLKLGRLEEALELLEKALELE-------------------- 89 (291)
T ss_pred HhhHHHHHHHHHHHHhcC------ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhh--------------------
Confidence 345556666666666533 11 125667777777888888888888777766420
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH-HHHhcCChhHHHHHHHHHHHhhHH
Q 044256 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLIN-GYCKNFNVEEAMNVSREMILNGFK 229 (363)
Q Consensus 151 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~ 229 (363)
........+......+...+++..+...+.........+ ......... .+...|+++.+...+.+.......
T Consensus 90 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (291)
T COG0457 90 ------LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPE 162 (291)
T ss_pred ------hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 012233445555555666666777777777666543222 111222222 566777777777666655331100
Q ss_pred HHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 230 KIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL-FVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
.......+......+...++.+.+...+....... +. ....+..+...+...++++.|...+......
T Consensus 163 ----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 163 ----------LNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred ----------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 00112223333333556677777777777776653 33 3566667777777777777777777777765
Q ss_pred CCCcc-HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 309 NLVAD-VVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 309 ~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
. |+ ...+..+...+...+..+++...+.+...
T Consensus 232 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 232 D--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred C--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 22 33444444444455667777777777665
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.04 E-value=0.96 Score=21.14 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 044256 27 FNSLIKGFCMEGNIRDASQLVK 48 (363)
Q Consensus 27 ~~~li~~~~~~~~~~~a~~~~~ 48 (363)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445556666666666666554
No 330
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.87 E-value=13 Score=30.09 Aligned_cols=123 Identities=8% Similarity=0.079 Sum_probs=87.6
Q ss_pred CCCChHHHHHHHHHHHh-cC-CHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCccHH
Q 044256 240 VVPETFTCNIFIDGLCK-NG-HVLEVMELFPTLEIS-NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-NLVADVV 315 (363)
Q Consensus 240 ~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ 315 (363)
+.-|..+...+++.... .+ ....-.++.+-+... +-.++..+...++..++..+++.+-.++|+..... +..-|..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 44567777777777665 22 233333444444433 23677788889999999999999999999988765 5567899
Q ss_pred HHHHHHHHHHccCChhHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHhhc
Q 044256 316 AYNILIHALGKEGQIKKENYLLLS-----MEENGCALDVDTFNTLMISFLQK 362 (363)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~~~~~~~ll~~~~~~ 362 (363)
.|..+|......|+..-..++.++ +.+.|+..+...-..+-+.|.+.
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~v 291 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKV 291 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhc
Confidence 999999999999998877777665 23446677776666666655543
No 331
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.60 E-value=8.4 Score=27.57 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=70.0
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-----cchHHHHH
Q 044256 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET--FTCNIFIDGLCKNGHVLEVMELFPTLEISNC-----ELFVEIFN 283 (363)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~ 283 (363)
|..-..++++.+.+. .....|.+.+..++. ...+.++......+++.-.+.+++.+..... ..+...|.
T Consensus 8 g~~~~nL~~w~~fi~----~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~ 83 (145)
T PF13762_consen 8 GNVLANLEVWKTFIN----SHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFH 83 (145)
T ss_pred cchhhhHHHHHHHHH----HHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHH
Confidence 444444444444432 334444544555554 3467777777777888888888877743210 23455677
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHhhhCCCCccHHHHHHHHHHHHcc
Q 044256 284 SLIRGCCKFGI-FEIASELFNKLSCKNLVADVVAYNILIHALGKE 327 (363)
Q Consensus 284 ~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 327 (363)
+++.+.++..- --.+..+|.-+.+.+.++++.-|..++.++.+-
T Consensus 84 ~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 84 IIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 88888766555 344566777777767788888888888877664
No 332
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.48 E-value=1.8 Score=21.10 Aligned_cols=30 Identities=7% Similarity=-0.010 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKG 33 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~ 33 (363)
|+++.|..+|+.+... .|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~--~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEK--FPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHH--CCCChHHHHHHHHH
Confidence 4677788888888776 45567777776653
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.46 E-value=13 Score=33.42 Aligned_cols=132 Identities=15% Similarity=0.136 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHH
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS 105 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (363)
.-+.+++.+.+.|-.++|+++- +|.. .-.....+.|+++.|.++..+.. +..-|..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~la~e~~------------s~~Kw~~ 671 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFDLAVEAN------------SEVKWRQ 671 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHHHHHhhc------------chHHHHH
Confidence 4556667777777766666542 2322 12334456788888877755443 3556888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 044256 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185 (363)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 185 (363)
|.++....+++..|.+.|....+-+-. --.+...|+-+....+-....+.| ..|....+|...|+++++.+++
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a~d~~~L-lLl~t~~g~~~~l~~la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRARDLGSL-LLLYTSSGNAEGLAVLASLAKKQG------KNNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred HHHHHhhcccchhHHHHHHhhcchhhh-hhhhhhcCChhHHHHHHHHHHhhc------ccchHHHHHHHcCCHHHHHHHH
Confidence 888888888888888888776543210 002334455444444444444444 2344455677889999999888
Q ss_pred HHH
Q 044256 186 DSM 188 (363)
Q Consensus 186 ~~~ 188 (363)
..-
T Consensus 745 i~t 747 (794)
T KOG0276|consen 745 IST 747 (794)
T ss_pred Hhc
Confidence 654
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.03 E-value=33 Score=33.79 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=21.8
Q ss_pred CCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 044256 97 KPNVFCYGSLIDGLCKDR--LVDQTKDLFMEMKD 128 (363)
Q Consensus 97 ~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~ 128 (363)
.|+ .....+|.+|++.+ .++.++....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 455 44556888888887 67777777777664
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.90 E-value=2.3 Score=23.12 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=10.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 044256 251 IDGLCKNGHVLEVMELFPTLEI 272 (363)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~ 272 (363)
..+|...|+.+.|.++++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444445555444444443
No 336
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.90 E-value=11 Score=28.40 Aligned_cols=88 Identities=10% Similarity=0.000 Sum_probs=47.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHH-----HHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCCh
Q 044256 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYS-----VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244 (363)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (363)
..+...++++.|+..++..... |....+. .|.......|.+++|+.+++.....+ ...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--------------w~~ 159 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--------------WAA 159 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--------------HHH
Confidence 4455667777777777665543 1222222 23344556677777766655543222 111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISN 274 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 274 (363)
.....-.+++...|+.++|..-|++.....
T Consensus 160 ~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 160 IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 122223455666677777777777666553
No 337
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.86 E-value=13 Score=29.04 Aligned_cols=103 Identities=12% Similarity=0.147 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc--cC
Q 044256 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN-GHVLEVMELFPTLEIS--NC 275 (363)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~--~~ 275 (363)
+|...-. |.+..++.+|...++..+ .+|-.|.+-... ...+..+...|-.. .++++|+..|+..-+. +-
T Consensus 76 ~YveA~~-cykk~~~~eAv~cL~~ai-----eIyt~~Grf~~a--Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 76 TYVEAAN-CYKKVDPEEAVNCLEKAI-----EIYTDMGRFTMA--AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE 147 (288)
T ss_pred HHHHHHH-HhhccChHHHHHHHHHHH-----HHHHhhhHHHHH--HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence 3333333 344557777777766653 445544432211 11222334444333 5566666666665432 11
Q ss_pred cchHHHHHH---HHHHHHhcCChHHHHHHHHHhhhCC
Q 044256 276 ELFVEIFNS---LIRGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 276 ~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
..+...--. ....-+..+++.+|..+|+++....
T Consensus 148 es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 148 ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111112 2222334566666666666665543
No 338
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.79 E-value=23 Score=31.76 Aligned_cols=175 Identities=10% Similarity=-0.023 Sum_probs=106.6
Q ss_pred cCChhHHHHHHHHHHhccCCCCC--cc---CCchhhHHHHHHHHHhcCCHHHHHHH-------HHHHHHcCCCcch----
Q 044256 72 TGNMNLTLKLHQEMVNGMGDFGG--IY---KPNVFCYGSLIDGLCKDRLVDQTKDL-------FMEMKDKGINANT---- 135 (363)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~--~~---~~~~~~~~~ll~~~~~~~~~~~a~~~-------~~~~~~~~~~~~~---- 135 (363)
...++++...|......-...+- .+ +-.+.+.-.+..++-..|+.+.+-.+ |+......+.|..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 44567888888777654311000 01 11233344555667778886655554 4445555555544
Q ss_pred --------------------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcC--
Q 044256 136 --------------------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYC-LVGKVNVAIALFDSMARKG-- 192 (363)
Q Consensus 136 --------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~-- 192 (363)
.+.+.|-+..|.++.+.+.+.+..-|+.....+|+.|+ ++.++.--+++++.....+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 44678899999999999988876557777777888875 5678888888887765442
Q ss_pred -CCCcHhHHHHHHHHHHhcCC---hhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHH
Q 044256 193 -FMPDVFSYSVLINGYCKNFN---VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246 (363)
Q Consensus 193 -~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (363)
.-|+..--.++...|..... -+.|...+.++.+..+..+.+.+....+.|+..|
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eLld~~~l~~da~~ 468 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLVLSELLDELLLGDDALT 468 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHHHHHHhccCCchhhh
Confidence 34444333445555555444 4567777777776655445555555555555443
No 339
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.61 E-value=18 Score=30.30 Aligned_cols=125 Identities=4% Similarity=-0.071 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh---cCChhHHHH
Q 044256 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR---TGNMNLTLK 80 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~ 80 (363)
.+.-+.+++++++. .|.+...+..++..+.+..+.+...+-|+++.... +-+...|...+..... .-.+.....
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 35567889999888 67689999999999999999999999999999873 3356677777765543 224556666
Q ss_pred HHHHHHhccCCCCCc----cCCchh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044256 81 LHQEMVNGMGDFGGI----YKPNVF-------CYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~----~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 131 (363)
+|.+....-...... ..+-.. ++..+......+|..+.|..+++.+.+..+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 665554322110000 111112 233333445567888888888888887654
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.56 E-value=1.2 Score=21.87 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=15.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH
Q 044256 319 ILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 319 ~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.+..++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555666677777777766665
No 341
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.44 E-value=16 Score=29.54 Aligned_cols=194 Identities=12% Similarity=0.109 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcch---------------hhhccCChHHHHHHHHHHH----HcCCCCchhhH
Q 044256 105 SLIDGLCKDRLVDQTKDLFMEMKDKGINANT---------------LLCKKTKLVEANRLLELMM----QRGLNPVIFTY 165 (363)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~ 165 (363)
.+.+-..+.+++++|+..+.++...|+..+. .+...|++..-.+...... +..-+......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 3455567888999999999999998877655 4455555554444332221 11112233445
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCcHh-----HHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcC
Q 044256 166 TPLLNGYCLV-GKVNVAIALFDSMARKGFMPDVF-----SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239 (363)
Q Consensus 166 ~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 239 (363)
.+++..+... ..++..+.+.....++....... .=..++..+.+.|.+.+|+.+...+ +.++++..
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l--------l~ElKk~D 159 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL--------LHELKKYD 159 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH--------HHHHHhhc
Confidence 5566665543 34566666666555542221111 1234677888999999999887654 44444444
Q ss_pred CCCChHHHHHH-HHHHHhcCCHHHHHHHHHHHHhc----cCcchHHHHHHHHHHH--HhcCChHHHHHHHHHhh
Q 044256 240 VVPETFTCNIF-IDGLCKNGHVLEVMELFPTLEIS----NCELFVEIFNSLIRGC--CKFGIFEIASELFNKLS 306 (363)
Q Consensus 240 ~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~ 306 (363)
-+|+..+...+ -.+|....++.++..-+...... -+||-...-.-|+.+- |.-.++..|..+|-+..
T Consensus 160 DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~ 233 (421)
T COG5159 160 DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEAL 233 (421)
T ss_pred CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHH
Confidence 45554433222 23455555555554444333321 2455444444444432 23334555555554443
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.34 E-value=6.5 Score=31.72 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 306 (363)
+++.....|...|.+.+|.++.+...... +.+...+-.|+..+...|+--.|.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45556678899999999999999999887 8889999999999999999888877777664
No 343
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=86.09 E-value=3.7 Score=22.82 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=23.7
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044256 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358 (363)
Q Consensus 324 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 358 (363)
..+.|-.+++..++++|.+.|+..+...+..+++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34566666777777777777777777777666653
No 344
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.86 E-value=12 Score=33.59 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 044256 35 CMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86 (363)
Q Consensus 35 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 86 (363)
.+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|....
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 34555555555443322 33345555555555555555555555443
No 345
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.74 E-value=4.7 Score=23.00 Aligned_cols=34 Identities=18% Similarity=0.032 Sum_probs=17.4
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044256 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356 (363)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 356 (363)
.-++.+.|++++|.+..+.+++ +.|+..-...|-
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 3455566666666666666665 455554444433
No 346
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.67 E-value=30 Score=32.07 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=108.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCcc--cHHHHHHHHH-hcCChhHHHHHHHHHHhccCCCCCccCC
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMAT-FGCRPNVT--TCDTLITGLR-RTGNMNLTLKLHQEMVNGMGDFGGIYKP 98 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~--~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 98 (363)
+...|..+|. .|+..++-+.+ ..++|..+ ++-.+...+. ...+.+.|...+++..... .++
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~------~~~ 93 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLC------ERH 93 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------ccc
Confidence 4556666664 45566666663 33344333 3444555554 6778999999998776544 122
Q ss_pred c-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----cch---------hhhccCChHHHHHHHHHHHHcC---
Q 044256 99 N-----VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN----ANT---------LLCKKTKLVEANRLLELMMQRG--- 157 (363)
Q Consensus 99 ~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~---------~~~~~~~~~~a~~~~~~~~~~~--- 157 (363)
+ -..-..++..+.+.+... |...+++.++.--. +.. .....+++..|.+.++.+....
T Consensus 94 ~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 94 RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 2 112234566666666655 88888887654222 111 1112378888888888776532
Q ss_pred CCCchhhHHHHHHHHH--hcCCHHHHHHHHHHHHHcC---------CCCcHhHHHHHHHHHH--hcCChhHHHHHHHHHH
Q 044256 158 LNPVIFTYTPLLNGYC--LVGKVNVAIALFDSMARKG---------FMPDVFSYSVLINGYC--KNFNVEEAMNVSREMI 224 (363)
Q Consensus 158 ~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 224 (363)
..|-..++..++.+.. +.+..+.+.+..+.+.... ..|-..+|..+++.++ ..|+++.+...++.+.
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2344555555555544 3455677777777663321 2345667777776554 5788778887777664
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.25 E-value=30 Score=31.63 Aligned_cols=113 Identities=12% Similarity=0.009 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHcCCCCCchhhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------cCCCCCcccHHHHHHHHHh
Q 044256 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKG-----FCMEGNIRDASQLVKKMAT-------FGCRPNVTTCDTLITGLRR 71 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~ 71 (363)
...|.+.++.....|. ...-..+..+ +....+++.|+.+|+.+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhcc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 3456666666666532 2222222222 2345677788887777765 33 33345556666655
Q ss_pred cC-----ChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcC
Q 044256 72 TG-----NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-DRLVDQTKDLFMEMKDKG 130 (363)
Q Consensus 72 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~ 130 (363)
.. +...|+.++...-..+ .|+....-..+..... ..+...|.++|....+.|
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 33 4455777777666655 3333332222222222 234455566655555443
No 348
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.11 E-value=26 Score=30.82 Aligned_cols=104 Identities=15% Similarity=-0.000 Sum_probs=68.2
Q ss_pred hhhhhHHHHHHHHH---HcCC--CCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCCc--------
Q 044256 2 SKVLGALMAFGSFI---RRCY--RPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMAT-------FGCRPNV-------- 59 (363)
Q Consensus 2 g~~~~A~~~~~~~~---~~~~--~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~~~~~~~-------- 59 (363)
|++..|.+++-..- ..|. .|. +-..||.+.-.+.+.|.+..+..+|.+.++ .|++|..
T Consensus 254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nk 333 (696)
T KOG2471|consen 254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNK 333 (696)
T ss_pred cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhccc
Confidence 67777777765432 1121 110 112357776667777777777777776653 4655532
Q ss_pred ---ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhc
Q 044256 60 ---TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD 113 (363)
Q Consensus 60 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 113 (363)
.+|| ..-.|...|++-.|.+.|...... +..++..|-.|..+|...
T Consensus 334 s~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-------fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 334 SMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-------FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred chhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHH
Confidence 1233 334567899999999999999876 478899999999988753
No 349
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.85 E-value=12 Score=26.79 Aligned_cols=81 Identities=14% Similarity=0.225 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCC-----CCccHHHHHHHHHHHHccCC-hhHHHHHHHHHHHcCCCCCHHHHHH
Q 044256 281 IFNSLIRGCCKFGIFEIASELFNKLSCKN-----LVADVVAYNILIHALGKEGQ-IKKENYLLLSMEENGCALDVDTFNT 354 (363)
Q Consensus 281 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ 354 (363)
..+.++.-.+..+++.....+++.+.... -..+...|..++.+..+..- ---+..+|+-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 45677777777788888888887774321 03466789999999876665 4457888999998889999999999
Q ss_pred HHHHHhh
Q 044256 355 LMISFLQ 361 (363)
Q Consensus 355 ll~~~~~ 361 (363)
+++++.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 9999875
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.39 E-value=28 Score=30.55 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=47.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHH
Q 044256 32 KGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC 111 (363)
Q Consensus 32 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 111 (363)
......|.++.+...+...... +.....+...+++..-+.|+++.|...-+-|.... -.+..+........-
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e-------ie~~ei~~iaa~sa~ 402 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNE-------IEDEEVLTVAAGSAD 402 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccc-------cCChhheeeecccHH
Confidence 3345566777766666554432 22344455666666666677777777666665543 122222222222223
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 044256 112 KDRLVDQTKDLFMEMKDKG 130 (363)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~ 130 (363)
..|-++++...++++....
T Consensus 403 ~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 403 ALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHhHHHHHHHHHHHHhccC
Confidence 3455666666666665443
No 351
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=84.23 E-value=3.8 Score=24.33 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 314 VVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 314 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
..-.-.+|.++...|++++|.++++++.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33334445555555555555555555543
No 352
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.59 E-value=2.9 Score=19.71 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATF 53 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 53 (363)
.+|..+...+...|+++.|...|+...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35666777777778888888877776653
No 353
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.98 E-value=51 Score=31.80 Aligned_cols=192 Identities=11% Similarity=0.026 Sum_probs=106.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCcHhHHHHHHHHHHhcCCh--hHHHHHHHHHHHhhHHHHHHHhHh-
Q 044256 164 TYTPLLNGYCLVGKVNVAIALFDSMARKG---FMPDVFSYSVLINGYCKNFNV--EEAMNVSREMILNGFKKIFNEMKL- 237 (363)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 237 (363)
-|..|+..|...|++++|.++|.+..+.. -..-...+..++..+...+.. +-.++.-.+..........+-...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 58889999999999999999999987741 011112233355555555554 555555555544332111111111
Q ss_pred -----cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcC--------ChHHHHHH---
Q 044256 238 -----CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG--------IFEIASEL--- 301 (363)
Q Consensus 238 -----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~--- 301 (363)
..+.++ . +-.|......+-+..+++.+....-.++....+.++..|...= +-+++.+.
T Consensus 586 ~~~~~~sis~~-----~-Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~r 659 (877)
T KOG2063|consen 586 DKQEAESISRD-----D-VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVR 659 (877)
T ss_pred ChhhhccCCHH-----H-HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHH
Confidence 111111 1 2234556677888888888877665667777777777776321 12233333
Q ss_pred --HHHhhh--CCCCcc--------HHHHHHHHHHHHccCChhHHHHHHHHHHHc-------------CCCCCHHHHHHHH
Q 044256 302 --FNKLSC--KNLVAD--------VVAYNILIHALGKEGQIKKENYLLLSMEEN-------------GCALDVDTFNTLM 356 (363)
Q Consensus 302 --~~~~~~--~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------g~~p~~~~~~~ll 356 (363)
+..+.+ ....|. ...|....-.+.+.|+.++|+.++-..+.. ...++...|..++
T Consensus 660 ekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL 739 (877)
T KOG2063|consen 660 EKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLL 739 (877)
T ss_pred HHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHH
Confidence 111111 111221 223333333445888888988887766541 2344777888888
Q ss_pred HHHhh
Q 044256 357 ISFLQ 361 (363)
Q Consensus 357 ~~~~~ 361 (363)
+.|..
T Consensus 740 ~~~l~ 744 (877)
T KOG2063|consen 740 RIYLN 744 (877)
T ss_pred HHHhc
Confidence 77654
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.86 E-value=44 Score=31.03 Aligned_cols=330 Identities=13% Similarity=0.092 Sum_probs=174.2
Q ss_pred hhHHHHHHHHHHc-CCCC-CchhhHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCcc-----cHHHHHHHHHhcCChh
Q 044256 5 LGALMAFGSFIRR-CYRP-LNDVTFNSLIKGFC-MEGNIRDASQLVKKMATFGCRPNVT-----TCDTLITGLRRTGNMN 76 (363)
Q Consensus 5 ~~A~~~~~~~~~~-~~~p-~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~l~~~~~~~~~~~ 76 (363)
..|++.++.+.+. ...| .+..++-.+...+. ...+++.|...+++.....-+++.. .-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4567777777742 2233 13445666777776 6789999999999876543233221 1234566666665555
Q ss_pred HHHHHHHHHHhccCCCCCccCCchhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCcch-------------hhhccCC
Q 044256 77 LTLKLHQEMVNGMGDFGGIYKPNVFCYGSL-IDGLCKDRLVDQTKDLFMEMKDKGINANT-------------LLCKKTK 142 (363)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~ 142 (363)
|...+++.++.-...+ ..+-...|..+ +..+...+++..|.+.++.+....-.... .....+.
T Consensus 118 -a~~~l~~~I~~~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred -HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 9998888776542100 11112223333 22333347999999999988764321121 3345666
Q ss_pred hHHHHHHHHHHHHcC---------CCCchhhHHHHHHHHH--hcCCHHHHHHHHHHHHHc---C-CC-------------
Q 044256 143 LVEANRLLELMMQRG---------LNPVIFTYTPLLNGYC--LVGKVNVAIALFDSMARK---G-FM------------- 194 (363)
Q Consensus 143 ~~~a~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~---~-~~------------- 194 (363)
.+.+.+.+..+.... ..|...+|..+++.++ ..|+++.+...++++.+. . -.
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~ 274 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIP 274 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEE
Confidence 777777776663321 2345667777776665 467777776666554321 0 00
Q ss_pred -------------CcHhHH---------HHHHHH--HHhcCChhHHHHHHHHHHHhhHHHHHHHhH-hcCCCCCh-----
Q 044256 195 -------------PDVFSY---------SVLING--YCKNFNVEEAMNVSREMILNGFKKIFNEMK-LCNVVPET----- 244 (363)
Q Consensus 195 -------------~~~~~~---------~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----- 244 (363)
|....| .-++.+ ....+..++|.+.+++..+. .+... .....+..
T Consensus 275 l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~-----i~~~~~~~~~~~~~sl~~~ 349 (608)
T PF10345_consen 275 LNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQ-----IEKLKIKSPSAPSESLSEA 349 (608)
T ss_pred eecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH-----HHHhhccCCCCCCcCHHHH
Confidence 111111 112222 23455566888888776542 22222 11111110
Q ss_pred ---HHHHHHHH---------HHHhcCCHHHHHHHHHHHHhccC--cc------hHHHHHHHHHHHHhcCChHHHHHHHH-
Q 044256 245 ---FTCNIFID---------GLCKNGHVLEVMELFPTLEISNC--EL------FVEIFNSLIRGCCKFGIFEIASELFN- 303 (363)
Q Consensus 245 ---~~~~~ll~---------~~~~~~~~~~a~~~~~~~~~~~~--~~------~~~~~~~li~~~~~~~~~~~a~~~~~- 303 (363)
..|...+. ..+-.+++..|....+.+....- ++ .+.++....-.+-..|+.+.|...|.
T Consensus 350 ~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~ 429 (608)
T PF10345_consen 350 SERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQK 429 (608)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 11111111 22346889899999998875421 11 12233333334456799999999998
Q ss_pred -------HhhhCCCCccHHHHHHH--HHHHHccC--ChhH--HHHHHHHHHH
Q 044256 304 -------KLSCKNLVADVVAYNIL--IHALGKEG--QIKK--ENYLLLSMEE 342 (363)
Q Consensus 304 -------~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~--a~~~~~~m~~ 342 (363)
.....+...+..++..+ +..+...+ ..++ +..+++.+..
T Consensus 430 ~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 430 PRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred hHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 44445444444444332 11222222 2223 6666666554
No 355
>PRK09687 putative lyase; Provisional
Probab=81.77 E-value=27 Score=28.54 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=25.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCh----hHHHHHHHHH
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM----NLTLKLHQEM 85 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~ 85 (363)
+.......+.++...|. .++...+..+.. .+|...-...+.+++..|+. .++...+..+
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 44444455555555543 223333333332 23434444445555555542 2344444444
No 356
>PRK09687 putative lyase; Provisional
Probab=81.58 E-value=27 Score=28.49 Aligned_cols=236 Identities=14% Similarity=0.010 Sum_probs=133.7
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCH----HHHHHHHHHHHHcCC
Q 044256 56 RPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV----DQTKDLFMEMKDKGI 131 (363)
Q Consensus 56 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~ 131 (363)
.+|.......+.++...|. +.+...+..+.. .+|...-...+.++.+.|+. .++...+..+...
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---------~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-- 101 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---------SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-- 101 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---------CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--
Confidence 3555555666666666654 333344444433 34555566666666666653 3455555554322
Q ss_pred CcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 044256 132 NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV-----NVAIALFDSMARKGFMPDVFSYSVLING 206 (363)
Q Consensus 132 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 206 (363)
.++..+-...+.++...+.. ..+...+...... ++..+-...+.+
T Consensus 102 ---------------------------D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~a 151 (280)
T PRK09687 102 ---------------------------DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFA 151 (280)
T ss_pred ---------------------------CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHH
Confidence 34444454555555444321 2233333333332 355666667777
Q ss_pred HHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhccCcchHHHHHHH
Q 044256 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG-HVLEVMELFPTLEISNCELFVEIFNSL 285 (363)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 285 (363)
+.+.++ .+++..+-.+... ++..+-...+.++...+ +...+...+..+.. .++..+-...
T Consensus 152 Lg~~~~-~~ai~~L~~~L~d---------------~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 152 LSVIND-EAAIPLLINLLKD---------------PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred HhccCC-HHHHHHHHHHhcC---------------CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 777766 4555555444432 44444444555555442 23456666666553 3466677778
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 286 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
+.++.+.|+. .|...+-...+.+ + .....+.++...|+. +|+..+..+.+. .||...-...+.+|.+
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 8888888874 4555555555443 2 234677888888885 688888888873 4677777777777654
No 357
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=81.57 E-value=2.1 Score=29.82 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=24.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 044256 35 CMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL 69 (363)
Q Consensus 35 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 69 (363)
...|.-.+|..+|.+|+..|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456667888899999998877764 77777654
No 358
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.46 E-value=24 Score=28.44 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=60.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHH
Q 044256 30 LIKGFCMEGNIRDASQLVKKMATF--GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLI 107 (363)
Q Consensus 30 li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 107 (363)
=|.+++..+++.+++...-+--+. .++| .+...-|-.|++.+.+..+.++-....... -..+..-|.+++
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p------~Nq~lp~y~~va 160 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDP------SNQSLPEYGTVA 160 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCc------ccCCchhhHHHH
Confidence 378888999999988766544332 2333 344555667889999999999998888754 233345587777
Q ss_pred HHHHh-----cCCHHHHHHHH
Q 044256 108 DGLCK-----DRLVDQTKDLF 123 (363)
Q Consensus 108 ~~~~~-----~~~~~~a~~~~ 123 (363)
..|.. .|.+++|.++.
T Consensus 161 ELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 161 ELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHhccccHHHHHHHH
Confidence 66654 58899988877
No 359
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=81.28 E-value=14 Score=25.60 Aligned_cols=40 Identities=8% Similarity=0.175 Sum_probs=22.3
Q ss_pred HHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271 (363)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 271 (363)
++.+....+.|++.....-+.+|.+.+++..|.++|+-++
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444555555555555555555556666655555544
No 360
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.24 E-value=28 Score=28.29 Aligned_cols=98 Identities=12% Similarity=-0.015 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----cCcchHHHH-HHHHHHHHhcCChHHHHHHHHHhhhCCCCccHH--
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEIS----NCELFVEIF-NSLIRGCCKFGIFEIASELFNKLSCKNLVADVV-- 315 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 315 (363)
-...+..+...|+..++.+.+.+..++.... |.+.|.... ..|.-.|....-.++-++..+.|.+.|-..+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 3456667777888888877777776665433 444443221 112223333334566667777777776544322
Q ss_pred --HHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 316 --AYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 316 --~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
+|..+. +....++.+|-.++-+...
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 233222 2234556777666666554
No 361
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.37 E-value=27 Score=27.55 Aligned_cols=119 Identities=13% Similarity=0.041 Sum_probs=70.9
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~ 80 (363)
.+++.|+..+.+.... .|..+.-|..-+.++.+..+++.+..=-.+.++. .||.. ....+..+......++.|+.
T Consensus 24 k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3567777766666654 6734455677777777778877777666665554 45543 33445556667777888888
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 126 (363)
.+.+......... ..+-..++..|..+--+.-...+..++.++.
T Consensus 100 ~Lqra~sl~r~~~--~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 100 VLQRAYSLLREQP--FTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHhcCC--CCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8777744332111 3344556666666554444445555544443
No 362
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.18 E-value=29 Score=27.86 Aligned_cols=164 Identities=10% Similarity=0.043 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc---CC--CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcC
Q 044256 165 YTPLLNGYCLVGKVNVAIALFDSMARK---GF--MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239 (363)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 239 (363)
...++....+.|++++....|.++... .+ .-+..+.++++.......+.+-....++.-+. .++..+...
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~-----ALkdAKNeR 142 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLD-----ALKDAKNER 142 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-----HHHhhhcce
Confidence 345677788888888888888777532 11 12445667777765555554444444433221 111111111
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-----------cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC-----------ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 240 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
. --.|-.-+...|...+.+.+..++++++...-- ..-..+|..=|..|....+-.....++++....
T Consensus 143 L--WFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhi 220 (440)
T KOG1464|consen 143 L--WFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHI 220 (440)
T ss_pred e--eeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHh
Confidence 1 111233455667777777777777777654310 111346666777777777777777777776542
Q ss_pred C-CCccHHHHHHHHHHH-----HccCChhHHHHH
Q 044256 309 N-LVADVVAYNILIHAL-----GKEGQIKKENYL 336 (363)
Q Consensus 309 ~-~~~~~~~~~~li~~~-----~~~g~~~~a~~~ 336 (363)
. .-|.+... .+|+-| .+.|++++|-.-
T Consensus 221 KSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 221 KSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hccCCchHHH-hHHHHcCCccccccchHHHHHhH
Confidence 1 23444433 344444 356777776543
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.68 E-value=15 Score=24.29 Aligned_cols=77 Identities=16% Similarity=0.031 Sum_probs=52.9
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHH--HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLI--KGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
..++|..+-+++... + +..-...+| ..+...|++++|..+.+.+. .||...|..| +-.+.|..+.+..
T Consensus 20 cHqEA~tIAdwL~~~---~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~AL--ce~rlGl~s~l~~ 89 (115)
T TIGR02508 20 CHQEANTIADWLHLK---G-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLAL--CEWRLGLGSALES 89 (115)
T ss_pred HHHHHHHHHHHHhcC---C-chHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHH--HHHhhccHHHHHH
Confidence 357787787777764 3 222233333 34678899999998887763 7888887665 3457787787777
Q ss_pred HHHHHHhcc
Q 044256 81 LHQEMVNGM 89 (363)
Q Consensus 81 ~~~~~~~~~ 89 (363)
-+..+...+
T Consensus 90 rl~rla~sg 98 (115)
T TIGR02508 90 RLNRLAASG 98 (115)
T ss_pred HHHHHHhCC
Confidence 777787766
No 364
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=79.48 E-value=24 Score=26.47 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHcCCCCCc-hhh-----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 044256 4 VLGALMAFGSFIRRCYRPLN-DVT-----FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~-~~~-----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 72 (363)
.+.|+.+|+.+.+.-..|.+ ... -...+-.|.++|.+++|.+++++... .|+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 35677777777765222200 011 12233457778888888888887775 34444444434333333
No 365
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.26 E-value=9 Score=29.15 Aligned_cols=59 Identities=8% Similarity=0.022 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCHHHHH---HHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 29 SLIKGFCMEGNIRDAS---QLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 29 ~li~~~~~~~~~~~a~---~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
..+.......+.+... +..++..+. .|+..+|..++.++...|+.++|.++..++...-
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3333333444444333 444444444 7888889988999999999999999988888764
No 366
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=79.23 E-value=13 Score=26.00 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHH
Q 044256 42 DASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLKLHQEM 85 (363)
Q Consensus 42 ~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 85 (363)
.+.++|..|...|+.-... -|......+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 9999999999988765544 5677778888999999999999764
No 367
>PRK10941 hypothetical protein; Provisional
Probab=78.97 E-value=33 Score=27.81 Aligned_cols=77 Identities=10% Similarity=-0.141 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHh
Q 044256 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN-GCALDVDTFNTLMISFL 360 (363)
Q Consensus 283 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~ 360 (363)
+.+-.+|.+.++++.|.++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++. .-.|+.......+....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 445556667777777777777776653 334555555555666777777777766666654 23455555555555443
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.72 E-value=8.9 Score=23.99 Aligned_cols=46 Identities=15% Similarity=-0.002 Sum_probs=21.6
Q ss_pred hcCChHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHccCChhHHHHH
Q 044256 291 KFGIFEIASELFNKLSCKNLVAD--VVAYNILIHALGKEGQIKKENYL 336 (363)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~ 336 (363)
...+.++|+..|....+.-..+. -.++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554321111 22344445555555555555443
No 369
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=78.51 E-value=6 Score=34.24 Aligned_cols=106 Identities=14% Similarity=-0.049 Sum_probs=72.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChh
Q 044256 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331 (363)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 331 (363)
..+...+.++.|..++.++++.. +.....|..=..++.+.+++..|..=+..+.+.. +-....|..-..++.+.+++.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHH
Confidence 34556778999999999988764 2233333333477888899999988888777763 222334444445566667778
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 332 KENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 332 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
+|+..|+.... +.|+..-+...+.-|-+
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 88888877776 78888888888776643
No 370
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.51 E-value=35 Score=27.80 Aligned_cols=139 Identities=11% Similarity=0.047 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHH-cCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhH-hcCCCCChHHHHHHHHH
Q 044256 176 GKVNVAIALFDSMAR-KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK-LCNVVPETFTCNIFIDG 253 (363)
Q Consensus 176 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~ 253 (363)
..+-+|.++|+.... ..+--|..+...+++......+. -...+- ++.+.+. ..+-.++..+...++..
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~--~l~alY--------EvV~~l~~t~~~~l~~~vi~~Il~~ 211 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT--KLNALY--------EVVDFLVSTFSKSLTRNVIISILEI 211 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc--chhhHH--------HHHHHHHhccccCCChhHHHHHHHH
Confidence 345566666663222 22445777777777776652222 111111 1122221 22345777788899999
Q ss_pred HHhcCCHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHhcCChHHHHHHHHHh-----hhCCCCccHHHHHHHHHHH
Q 044256 254 LCKNGHVLEVMELFPTLEIS-NCELFVEIFNSLIRGCCKFGIFEIASELFNKL-----SCKNLVADVVAYNILIHAL 324 (363)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~li~~~ 324 (363)
++..+++.+-.++|...... +...|...|..+|..-...|+..-...+.++= .+.++..+...-..+-..+
T Consensus 212 L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 212 LAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 99999999999999988766 45678899999999999999998888887752 3455565655555444443
No 371
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=78.35 E-value=27 Score=26.42 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--------C------CCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 044256 167 PLLNGYCLVGKVNVAIALFDSMARK--------G------FMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222 (363)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~--------~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (363)
+++..|-+.-+|.+..++++.|.+. | ..+--...|.....+.+.|..+.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3455666677777777777766543 1 223344556666777788888888777763
No 372
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.96 E-value=66 Score=30.73 Aligned_cols=122 Identities=11% Similarity=0.015 Sum_probs=64.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH-------------HHHHH
Q 044256 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF-------------KKIFN 233 (363)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~ 233 (363)
+....+...|+.+....+-.-+.+ |..++..+.+.+.+++|++++..-..... ..+.+
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~ 579 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVS 579 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHH
Confidence 334444555666665554433332 55667777778888888777665422111 22222
Q ss_pred HhHhcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHH
Q 044256 234 EMKLCNVVPETFTCNIFIDGLCKNG---HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297 (363)
Q Consensus 234 ~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 297 (363)
.....+-..+......++..+.+.+ ....+...++-....-...++..+|.++..|++..+-+.
T Consensus 580 ~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~l 646 (911)
T KOG2034|consen 580 AWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDL 646 (911)
T ss_pred HHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccch
Confidence 2222222233334445555555542 344555555554443335678889999988887654433
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.38 E-value=23 Score=31.94 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=74.2
Q ss_pred hhhhhHHHHHHHHHHcCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPL-NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
|+...|...+..+... .|. .......|...+.+.|-..+|-.++.+.+... ....-++..+.+++.-..+.+.|++
T Consensus 621 gn~~~a~~cl~~a~~~--~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNL--APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred CCcHHHHHHHHHHhcc--ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 6677788888777664 342 33456677788888888889999998877664 3345577788899999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC 111 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 111 (363)
.|++..... +.+..+-+.|...-+
T Consensus 698 ~~~~a~~~~-------~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLT-------TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcC-------CCChhhHHHHHHHHH
Confidence 999998864 455666666655444
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.32 E-value=16 Score=27.73 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=19.7
Q ss_pred CccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 311 VADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 311 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.|++..|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666666666555
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.21 E-value=8.2 Score=24.16 Aligned_cols=47 Identities=15% Similarity=0.019 Sum_probs=31.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC-c-ccHHHHHHHHHhcCChhHHHHHH
Q 044256 36 MEGNIRDASQLVKKMATFGCRPN-V-TTCDTLITGLRRTGNMNLTLKLH 82 (363)
Q Consensus 36 ~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~ 82 (363)
...+.++|+..|...++.-..|. . .++..++.+++..|++.++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888776532222 1 25567778888888887776653
No 376
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.10 E-value=38 Score=27.45 Aligned_cols=85 Identities=13% Similarity=0.022 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHH---
Q 044256 251 IDGLCKNGHVLEVMELFPTLEIS--NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG--- 325 (363)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--- 325 (363)
|++++..+++.+++...-.--+. .+|| .+...-|-.|.+.+.+..+.++-..-....-.-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 66777777777766543332221 2333 3334444556777777777766555543311223333555554443
Q ss_pred --ccCChhHHHHHH
Q 044256 326 --KEGQIKKENYLL 337 (363)
Q Consensus 326 --~~g~~~~a~~~~ 337 (363)
=.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 357777776654
No 377
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=77.07 E-value=5.8 Score=32.17 Aligned_cols=37 Identities=30% Similarity=0.307 Sum_probs=19.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHH
Q 044256 317 YNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353 (363)
Q Consensus 317 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 353 (363)
|+..|....+.||+++|++++++..+.|+.--..+|-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3355555555555555555555555555544444443
No 378
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.67 E-value=72 Score=30.52 Aligned_cols=220 Identities=12% Similarity=0.002 Sum_probs=117.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcch----------------hhhccCChHHHHHHHHHHHHcC----CCCchhhHHHHH
Q 044256 110 LCKDRLVDQTKDLFMEMKDKGINANT----------------LLCKKTKLVEANRLLELMMQRG----LNPVIFTYTPLL 169 (363)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li 169 (363)
.....++++|..+..++...-..|.. +....|++++|.++.+.....= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888888765444333 4456788888888877766531 234456667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH---HHH--HHHhcCChhHHH--HHHHHHHHhhHHHHHHHhHhcCC-C
Q 044256 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV---LIN--GYCKNFNVEEAM--NVSREMILNGFKKIFNEMKLCNV-V 241 (363)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~--~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~-~ 241 (363)
.+..-.|++++|..+..+..+..-.-+...+.. +.. .+...|+...+. ..+...... . ..+... .
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q----~---l~q~~~~~ 577 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ----H---LEQKPRHE 577 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----H---hhhcccch
Confidence 777788999999998877655422223333332 222 244456322222 222211111 0 111111 1
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CcchH--H--HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCc---
Q 044256 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISN--CELFV--E--IFNSLIRGCCKFGIFEIASELFNKLSCKNLVA--- 312 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~--~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--- 312 (363)
+-..++..++.++.+ .+.+..-...-.+.+ ..|.. . .+..|+......|++++|...++++......+
T Consensus 578 f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 578 FLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred hHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 122344445555554 333333322222221 11221 1 22367778888999999999999887643222
Q ss_pred -cHHHHHHHHH--HHHccCChhHHHHHHHH
Q 044256 313 -DVVAYNILIH--ALGKEGQIKKENYLLLS 339 (363)
Q Consensus 313 -~~~~~~~li~--~~~~~g~~~~a~~~~~~ 339 (363)
+..+-...+. -....|+..++.....+
T Consensus 655 ~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 655 VDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred chHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222222 23457888877776655
No 379
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=75.90 E-value=22 Score=24.08 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEI 272 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (363)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355555556566666666666655554
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.51 E-value=12 Score=26.30 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=50.1
Q ss_pred CCCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 20 RPLNDVTFNSLIKGFCMEGN---IRDASQLVKKMATFGCRPN--VTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
.+ +..+-..+..++.+..+ ..+.+.+++.+.+.. .|+ ......|.-++.+.++++.++++.+.+.+..
T Consensus 29 ~~-s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DV-SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cc-hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 55 77777778888877664 566778999988632 333 2334456668889999999999999998876
No 381
>PRK10941 hypothetical protein; Provisional
Probab=75.40 E-value=42 Score=27.21 Aligned_cols=78 Identities=10% Similarity=0.006 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHH
Q 044256 27 FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSL 106 (363)
Q Consensus 27 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (363)
.+.+-.+|.+.++++.|+.+.+.+.... +.+..-+.--.-.|.+.|.+..|..=++..++... -.|+.......
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P-----~dp~a~~ik~q 257 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP-----EDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-----CchhHHHHHHH
Confidence 4455567889999999999999999874 33455566677789999999999999999987542 23444444444
Q ss_pred HHHH
Q 044256 107 IDGL 110 (363)
Q Consensus 107 l~~~ 110 (363)
+...
T Consensus 258 l~~l 261 (269)
T PRK10941 258 IHSI 261 (269)
T ss_pred HHHH
Confidence 4433
No 382
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.38 E-value=1.3e+02 Score=32.71 Aligned_cols=253 Identities=13% Similarity=0.050 Sum_probs=128.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHH-HHH
Q 044256 30 LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS-LID 108 (363)
Q Consensus 30 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~ 108 (363)
-|......|++..|...|+.+.+.+ ++...+++-++......+.+...+-..+-..... .+....|+. =+.
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-------se~~~~~~s~~~e 1526 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-------SEEVDELNSLGVE 1526 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-------CHHHHHHHHHHHH
Confidence 3444677899999999999998874 3346677777777777788887777666665543 333333333 334
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcchh-------h-hccCChHHHHHHHHHHHHcCCCC--------c-hhhHHHHHHH
Q 044256 109 GLCKDRLVDQTKDLFMEMKDKGINANTL-------L-CKKTKLVEANRLLELMMQRGLNP--------V-IFTYTPLLNG 171 (363)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~-~~~~~~~~a~~~~~~~~~~~~~~--------~-~~~~~~li~~ 171 (363)
+--+.++++....... +.......+ + ....+.-.-.+.++.+.+.-+.| + ...|..++..
T Consensus 1527 aaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kL 1603 (2382)
T KOG0890|consen 1527 AAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKL 1603 (2382)
T ss_pred HHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHH
Confidence 4467777777666654 111111110 0 11111111222333322221110 0 1223333222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCc------HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCC-CCh
Q 044256 172 YCLVGKVNVAIALFDSMARKGFMPD------VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV-PET 244 (363)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 244 (363)
..-.. -....+... ++.++ ..-|..-+..-....+..+-+--+++ .++....+.+.. --.
T Consensus 1604 H~l~e----l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RR-------s~l~~~~~~~~~~~~g 1670 (2382)
T KOG0890|consen 1604 HLLLE----LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRR-------SMLDLRMRSNLKSRLG 1670 (2382)
T ss_pred HHHHH----HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHH-------HHHHHhccccccchhH
Confidence 21111 111111111 11222 12222222211111111111111111 112111111222 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
.+|....+.....|+++.|...+-...+.+ . +..+.-....+.+.|+...|+.++++..+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 578888888888999999998887777665 3 3466677788889999999999999988653
No 383
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.13 E-value=80 Score=30.26 Aligned_cols=199 Identities=17% Similarity=0.085 Sum_probs=106.8
Q ss_pred hhhccCChHHHHHHHHHHHHcCCCCchh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHHc----CCCCcHhHHHHH
Q 044256 136 LLCKKTKLVEANRLLELMMQRGLNPVIF-------TYTPLLN-GYCLVGKVNVAIALFDSMARK----GFMPDVFSYSVL 203 (363)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 203 (363)
......++.+|..++.++...-..|+.. .++.+-. .....|+++.|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4457788999999888876543333322 2232221 223468899998888776554 223455666777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHH--HHHHhcCCHH--HHHHHHHHHHhc---cC-
Q 044256 204 INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI--DGLCKNGHVL--EVMELFPTLEIS---NC- 275 (363)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~--~a~~~~~~~~~~---~~- 275 (363)
..+..-.|++++|..+.....+.. ...++ +-...|..+. ..+..+|... +.+..+...... ..
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a--------~~~~~-~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMA--------RQHDV-YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHH--------HHccc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 778888899999988876654431 11111 1222333332 2345566332 222333333221 11
Q ss_pred --cchHHHHHHHHHHHHhc-CChHHHHHHHHHhhhCCCCccHHH--HHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 276 --ELFVEIFNSLIRGCCKF-GIFEIASELFNKLSCKNLVADVVA--YNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 276 --~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.+-..++..++.++.+. +...++..-+.--......|-... +..++......|+.++|...++++...
T Consensus 575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 12234555566665552 122222222222222221222222 235677888899999999999998765
No 384
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=74.82 E-value=28 Score=25.06 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=28.6
Q ss_pred HHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccC
Q 044256 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328 (363)
Q Consensus 268 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 328 (363)
..+.+.|+++++ --..++..+...++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 333444444432 123344555555555666666666665544444444444444444444
No 385
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.61 E-value=6.9 Score=31.79 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=33.7
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 63 (363)
.|.+..-|+..|....+.|++++|+.++++..+.|+.--..+|-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 45233447799999999999999999999999988765444543
No 386
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=74.32 E-value=8.9 Score=19.14 Aligned_cols=25 Identities=4% Similarity=0.081 Sum_probs=16.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 044256 329 QIKKENYLLLSMEENGCALDVDTFNTL 355 (363)
Q Consensus 329 ~~~~a~~~~~~m~~~g~~p~~~~~~~l 355 (363)
.++.|..+|++.+. +.|+..+|-..
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 35667777777776 45776666543
No 387
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.18 E-value=12 Score=20.82 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=28.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 044256 32 KGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67 (363)
Q Consensus 32 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 67 (363)
....+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 334677888889999999988888888777776664
No 388
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.82 E-value=37 Score=25.82 Aligned_cols=92 Identities=7% Similarity=-0.068 Sum_probs=64.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCcc--hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccC
Q 044256 251 IDGLCKNGHVLEVMELFPTLEISNCEL--FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328 (363)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 328 (363)
...+...+++++|+..++......... ...+--.|.+.....|.+++|..+++.....+. .......-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 345677899999999998776432111 122223455667788999999999988776532 2333334456888999
Q ss_pred ChhHHHHHHHHHHHcC
Q 044256 329 QIKKENYLLLSMEENG 344 (363)
Q Consensus 329 ~~~~a~~~~~~m~~~g 344 (363)
+-++|..-|+..++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999998875
No 389
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.48 E-value=21 Score=29.47 Aligned_cols=59 Identities=12% Similarity=0.226 Sum_probs=32.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 65 LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 65 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 128 (363)
|..+..+.|+..+|.+.|+++.+... +..-..+...|+.++....-+.++..++-+..+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~p-----l~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFP-----LLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444567788888888877765420 001122334566666666656666555555443
No 390
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=73.11 E-value=9.2 Score=22.96 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=40.0
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 72 (363)
.| ....++.++...++..-.++++..+.++...| ..+..+|.--++.+++.
T Consensus 5 ~~-~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VA-EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 45 67789999999999999999999999999988 35666776666666553
No 391
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=73.05 E-value=17 Score=21.55 Aligned_cols=46 Identities=26% Similarity=0.257 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
++...++.+.+... .-|-.-.-.+|.+|...|++++|.++++++..
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455544433 33444556677888888888888888777654
No 392
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=72.95 E-value=24 Score=32.33 Aligned_cols=144 Identities=12% Similarity=0.018 Sum_probs=51.1
Q ss_pred hcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 044256 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG 288 (363)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 288 (363)
..+-++-|..++......| ....+.+...-...+.....-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..
T Consensus 371 ~~~lW~vai~yL~~c~~~g-~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~ 447 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG-RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSW 447 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS--HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh-HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHH
Confidence 4566788888887766666 45555555544455666778888999999999999999988765532 23456677777
Q ss_pred HHhcCChHHHHHHHHHhhhC----CCCccHHHHHHH---------HHHH---------HccCChhHHHHHHHHHHHcCCC
Q 044256 289 CCKFGIFEIASELFNKLSCK----NLVADVVAYNIL---------IHAL---------GKEGQIKKENYLLLSMEENGCA 346 (363)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l---------i~~~---------~~~g~~~~a~~~~~~m~~~g~~ 346 (363)
+.++|+...+..+.+.+.+. |...+....+.+ +..| .+.|++.+|.+.+-.+.+.++.
T Consensus 448 ~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~ 527 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIA 527 (566)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCC
Confidence 88889888877766665532 222221111111 1111 2347777787777777776666
Q ss_pred CCHHHHHHH
Q 044256 347 LDVDTFNTL 355 (363)
Q Consensus 347 p~~~~~~~l 355 (363)
|...-...|
T Consensus 528 Pk~f~~~LL 536 (566)
T PF07575_consen 528 PKSFWPLLL 536 (566)
T ss_dssp ---------
T ss_pred cHHHHHHHH
Confidence 655443333
No 393
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=71.99 E-value=12 Score=32.55 Aligned_cols=99 Identities=15% Similarity=0.042 Sum_probs=72.8
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCChhHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-VTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
++++.|+.++.++.+. .|..+..|..-..++.+.+++..|+.=+.+.++.. |+ ...|..-..++.+.+.+.+|+.
T Consensus 18 ~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred chHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHHHH
Confidence 5788999999999987 88556666666688899999999998888887763 33 2344444556667778888888
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHh
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK 112 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 112 (363)
.|+.... +.|+..-....+.-|-+
T Consensus 94 ~l~~~~~--------l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 94 DLEKVKK--------LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHhhh--------cCcCcHHHHHHHHHHHH
Confidence 8888877 67777777766665543
No 394
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.98 E-value=67 Score=27.98 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCCCchhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCChhHHHHHHH
Q 044256 9 MAFGSFIRRCYRPLNDVT--FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT--TCDTLITGLRRTGNMNLTLKLHQ 83 (363)
Q Consensus 9 ~~~~~~~~~~~~p~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 83 (363)
++++.+.+.|..| +... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 16 DIARRLLDIGINP-NFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 4456666777776 4322 3345555667777653 44445556555432 11234455567777766555554
No 395
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=71.71 E-value=58 Score=27.14 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHHHcCCC---CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 4 VLGALMAFGSFIRRCYR---PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~---p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.+.|.+.|+.+...+.. +.++..-..++....+.|+.+.-..+++.... .++......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 56788889888875333 33667777777888888886665566655554 3466667888888888888888888
Q ss_pred HHHHHHhc
Q 044256 81 LHQEMVNG 88 (363)
Q Consensus 81 ~~~~~~~~ 88 (363)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 88888874
No 396
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.57 E-value=88 Score=29.16 Aligned_cols=90 Identities=10% Similarity=0.083 Sum_probs=42.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHH
Q 044256 169 LNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248 (363)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (363)
...+.-.|+++.|++.+-. ..+...+.+++...+..|.-.+-.+... ..+.... .. .|...-+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~---------~~--~~~~ln~a 328 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVD---------PG--DPPPLNFA 328 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------------------HH
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeec---------CC--CCCCcCHH
Confidence 4555668999999998876 2233456666666665443322222211 1111100 00 12225577
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhcc
Q 044256 249 IFIDGLCK---NGHVLEVMELFPTLEISN 274 (363)
Q Consensus 249 ~ll~~~~~---~~~~~~a~~~~~~~~~~~ 274 (363)
.||..|.+ ..++.+|.++|--+....
T Consensus 329 rLI~~Y~~~F~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 329 RLIGQYTRSFEITDPREALQYLYLICLFK 357 (613)
T ss_dssp HHHHHHHHTTTTT-HHHHHHHHHGGGGS-
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHcC
Confidence 78888876 457888888887776554
No 397
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=71.33 E-value=33 Score=28.11 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=37.7
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 044256 264 MELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325 (363)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 325 (363)
.++|+.+...++.|.-.++.-+.-.+.+.=.+..+..+|+.+... +.-|..++..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 456677777777777777777777777777777777777777653 222555555544
No 398
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.00 E-value=50 Score=26.07 Aligned_cols=31 Identities=3% Similarity=0.060 Sum_probs=21.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCcchHHHH
Q 044256 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIF 282 (363)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 282 (363)
..-+..+++.+|+++|+++....+..+..-|
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 3345568899999999998877655444444
No 399
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.16 E-value=1.7e+02 Score=31.89 Aligned_cols=62 Identities=11% Similarity=-0.097 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 279 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
..+|....+.....|.++.|...+-...+.+ -+..+--...-+.+.|+-..|+.++++-++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 5678888888888999999999887777765 3445556677788999999999999998865
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.09 E-value=25 Score=22.94 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=8.9
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 044256 69 LRRTGNMNLTLKLHQEMVN 87 (363)
Q Consensus 69 ~~~~~~~~~a~~~~~~~~~ 87 (363)
....|++++|...+++.+.
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3444455555544444443
No 401
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.09 E-value=75 Score=27.38 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcc---CCCCCccCC
Q 044256 24 DVTFNSLIKGFCMEGNIRDASQLVKKMATFG--CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM---GDFGGIYKP 98 (363)
Q Consensus 24 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 98 (363)
...+.-+...|...|+++.|++.|-+....- -+-....|-.+|..-.-.|+|........+..+.. ......+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4567788899999999999999999855431 11223456666777777888888877777776541 011111344
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHH
Q 044256 99 NVFCYGSLIDGLCKDRLVDQTKDLFM 124 (363)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~ 124 (363)
-..++..+...+.+ .+..|.+.|-
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHH
Confidence 45555555554444 5555554443
No 402
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=68.83 E-value=45 Score=24.78 Aligned_cols=61 Identities=16% Similarity=0.002 Sum_probs=35.5
Q ss_pred HhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhH
Q 044256 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332 (363)
Q Consensus 271 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 332 (363)
...|+.++..- ..++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-..+
T Consensus 18 ~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 18 AQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 34455444332 23444444455666777777777777666666666666666666665543
No 403
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=68.75 E-value=41 Score=30.96 Aligned_cols=91 Identities=23% Similarity=0.278 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHhcCChH------HHHHHHHHhhhCCCCccHHHHHHH
Q 044256 249 IFIDGLCKNGHVLEVMELFPTLEISN--CELFVEIFNSLIRGCCKFGIFE------IASELFNKLSCKNLVADVVAYNIL 320 (363)
Q Consensus 249 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 320 (363)
.|+.+|...|++..+.++++.....+ -+.-...||..|+...+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999987653 2223456788888888888764 3445555544 34478888888
Q ss_pred HHHHHccCChhHHHHHHHHHHH
Q 044256 321 IHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~m~~ 342 (363)
+.+-..--+..-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776664444444445555443
No 404
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.35 E-value=8.1 Score=27.08 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=16.9
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 044256 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171 (363)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (363)
...|.-..|..+|.+|++.|-+|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 344455555555555555555555 35555543
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.70 E-value=50 Score=24.85 Aligned_cols=83 Identities=8% Similarity=0.111 Sum_probs=51.5
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHH----HHHHHHHh--cC--------------CHHHHHHHHHHHHhcCCCCC--c
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFN----SLIKGFCM--EG--------------NIRDASQLVKKMATFGCRPN--V 59 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~----~li~~~~~--~~--------------~~~~a~~~~~~m~~~~~~~~--~ 59 (363)
.++.+-.++++.++. .|....+.+ .++..+.+ .| -.+.|+.+|+.+.+.--.|. .
T Consensus 30 ~dFr~~rdi~e~ll~---~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E~~~~~~lh 106 (200)
T cd00280 30 EDFRRTRDIAEALLV---GPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESIEKEFSLPETLH 106 (200)
T ss_pred HHHHHHHHHHHHHHh---ccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHhcCCcHHHH
Confidence 345556666666665 333344433 44444443 22 26789999999887632221 1
Q ss_pred ccH-----HHHHHHHHhcCChhHHHHHHHHHHh
Q 044256 60 TTC-----DTLITGLRRTGNMNLTLKLHQEMVN 87 (363)
Q Consensus 60 ~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~ 87 (363)
..- ...+-.|.+.|.+++|.++++...+
T Consensus 107 e~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 107 EEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 111 2345678899999999999999987
No 406
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.33 E-value=58 Score=29.59 Aligned_cols=28 Identities=11% Similarity=-0.049 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEIS 273 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 273 (363)
++-.+..++....+++.|++.|+...+.
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 3444444555555555555555555444
No 407
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=67.30 E-value=99 Score=28.09 Aligned_cols=305 Identities=13% Similarity=0.117 Sum_probs=167.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 101 (363)
+...|..+|.---.....+.+..++..++.. -|... -|......-.+.|..+.+.++|++.++. ++.+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-------ip~Svd 114 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-------IPLSVD 114 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------hhhHHH
Confidence 5566777776555555667777888888765 56554 3444455556889999999999999986 467777
Q ss_pred hHHHHHHHH-HhcCCHHHHHHHHHHHHHc-CCCc--ch-------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 044256 102 CYGSLIDGL-CKDRLVDQTKDLFMEMKDK-GINA--NT-------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLN 170 (363)
Q Consensus 102 ~~~~ll~~~-~~~~~~~~a~~~~~~~~~~-~~~~--~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (363)
.|...+.-+ ...|+.+...+.|+..... |..- .. .-..++++.....+++.+++... ..|+..-.
T Consensus 115 lW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~ 190 (577)
T KOG1258|consen 115 LWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFD 190 (577)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHH
Confidence 787765544 4567888888888887764 2221 11 23467778888888888876521 22222222
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHc----CCCCcHhHHHHHHHHHHh-cCChhHHHHHHHHHHHhhH--------
Q 044256 171 GYCL---------VGKVNVAIALFDSMARK----GFMPDVFSYSVLINGYCK-NFNVEEAMNVSREMILNGF-------- 228 (363)
Q Consensus 171 ~~~~---------~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~-------- 228 (363)
-|.+ ....+.+.++-...... ...+.......-+.-... .+..+++.....+.....-
T Consensus 191 ~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~ 270 (577)
T KOG1258|consen 191 RFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEE 270 (577)
T ss_pred HHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHh
Confidence 2221 12334444433332210 001122222222221111 1222233222222211110
Q ss_pred ----HHHHHHhHhc---CC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHH
Q 044256 229 ----KKIFNEMKLC---NV----VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297 (363)
Q Consensus 229 ----~~~~~~~~~~---~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 297 (363)
...++.-... .+ .+...+|...+..-...|+.+.+.-+|+...-. +..-...|--.+......|+.+-
T Consensus 271 ~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~ 349 (577)
T KOG1258|consen 271 EEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSL 349 (577)
T ss_pred HHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhH
Confidence 0011111100 11 224557888888888889999998888876532 22334455555555555688888
Q ss_pred HHHHHHHhhhCCCC--ccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 298 ASELFNKLSCKNLV--ADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 298 a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
|..++....+--.+ |......+. ..-..|+++.|..+++.+.+.
T Consensus 350 ~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 350 ANNVLARACKIHVKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHHHHhhhhhcCCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhh
Confidence 87777766554322 333333322 233467888888888888765
No 408
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.27 E-value=31 Score=22.20 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHH
Q 044256 43 ASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQT 119 (363)
Q Consensus 43 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 119 (363)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .+ +..|...+.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----------~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----------EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----------CcHHHHHHHHHHHcCchhhh
Confidence 34555666655532 22222222222224566677777777666 44 34566666666666654443
No 409
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.24 E-value=31 Score=22.33 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=42.1
Q ss_pred HHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCCh
Q 044256 10 AFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRP-NVTTCDTLITGLRRTGNM 75 (363)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~ 75 (363)
-++..... .|.|...-..+...+...|++++|++.+-.+.+..... +...-..++..+.-.|.-
T Consensus 10 al~~~~a~--~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 10 ALEAALAA--NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 34444444 77788999999999999999999999999988764222 233445566666555543
No 410
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.21 E-value=19 Score=21.68 Aligned_cols=49 Identities=8% Similarity=0.117 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHh
Q 044256 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 291 (363)
|....++.++..+++..-.+.++..+.++...| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 555566667777766666777777777776666 3445555555555444
No 411
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.67 E-value=39 Score=24.33 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 044256 9 MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74 (363)
Q Consensus 9 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 74 (363)
++...+.+.|.++ +.--..+++.+...++.-.|.++|+++.+.+...+..|--..+..+...|-
T Consensus 7 ~~~~~lk~~glr~--T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRL--TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCc--CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3445566777776 334566788888888889999999999988655555554455666666653
No 412
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.67 E-value=5.3 Score=32.95 Aligned_cols=94 Identities=13% Similarity=-0.050 Sum_probs=65.1
Q ss_pred hcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccH-HHHHHHHHHHHccCChhHHH
Q 044256 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV-VAYNILIHALGKEGQIKKEN 334 (363)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~ 334 (363)
..|.++.|++.|...+..+ ++....|.-=..++.+.+....|++-++..... .||. .-|-.--.+-...|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 5677888888888888776 666777777777778888888888877777665 2332 22332233445578888888
Q ss_pred HHHHHHHHcCCCCCHHHH
Q 044256 335 YLLLSMEENGCALDVDTF 352 (363)
Q Consensus 335 ~~~~~m~~~g~~p~~~~~ 352 (363)
+.+....+.++.+....+
T Consensus 203 ~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHhccccHHHHHH
Confidence 888888887776655443
No 413
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.08 E-value=1.2e+02 Score=28.67 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=84.5
Q ss_pred hhhhhHHHHHHHHHHcCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPL--NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 79 (363)
+.+++|+++-+..... .|. ....+..+|..+...|++++|-...-.|.. -+..-|...+..+...++.....
T Consensus 370 k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred hHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccccchhh
Confidence 4566666665544332 221 245677888888888888888888877773 35666766666666666554333
Q ss_pred HHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCC
Q 044256 80 KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLN 159 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (363)
.+ +.... ...+..+|..++..+.. .+.. -|.+.++. -|...|...-..+... .++.+. .
T Consensus 444 ~~---lPt~~------~rL~p~vYemvLve~L~-~~~~----~F~e~i~~--Wp~~Lys~l~iisa~~---~q~~q~--S 502 (846)
T KOG2066|consen 444 PY---LPTGP------PRLKPLVYEMVLVEFLA-SDVK----GFLELIKE--WPGHLYSVLTIISATE---PQIKQN--S 502 (846)
T ss_pred cc---CCCCC------cccCchHHHHHHHHHHH-HHHH----HHHHHHHh--CChhhhhhhHHHhhcc---hHHHhh--c
Confidence 22 22211 23456678888877766 2222 22222221 1111110000000000 011111 1
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190 (363)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 190 (363)
-+...-..|+..|...+++..|..++-.+.+
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 1222334478888888999999888766543
No 414
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=65.20 E-value=67 Score=25.41 Aligned_cols=92 Identities=10% Similarity=0.091 Sum_probs=60.2
Q ss_pred HHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-c-----------CcchHHHHHHHHHHHHhcCChHHH
Q 044256 231 IFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-N-----------CELFVEIFNSLIRGCCKFGIFEIA 298 (363)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~li~~~~~~~~~~~a 298 (363)
+.+-.+..++.-+..-..+++ +...|+..+|+..++.-... | -.|.+.....++..|. .+++++|
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A 257 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEA 257 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHH
Confidence 333344556666666666555 55788888888887765422 1 1466767777777654 5689999
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHHHc
Q 044256 299 SELFNKLSCKNLVADVVAYNILIHALGK 326 (363)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~li~~~~~ 326 (363)
.+++.++-+.|+.|. ...+++.+.+-.
T Consensus 258 ~~il~~lw~lgysp~-Dii~~~FRv~K~ 284 (333)
T KOG0991|consen 258 LKILAELWKLGYSPE-DIITTLFRVVKN 284 (333)
T ss_pred HHHHHHHHHcCCCHH-HHHHHHHHHHHh
Confidence 999999988887754 444556665543
No 415
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.16 E-value=4.6 Score=33.28 Aligned_cols=84 Identities=13% Similarity=-0.037 Sum_probs=58.8
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhcCChhHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV-TTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 80 (363)
|.++.|++.|....+. .|.....|..-.+++.+.+++..|++=++..+.. .||. .-|-.--.+-.-.|+|++|..
T Consensus 128 G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 5677788888777775 5546667777777888888888888877777765 3443 234444444555688888888
Q ss_pred HHHHHHhcc
Q 044256 81 LHQEMVNGM 89 (363)
Q Consensus 81 ~~~~~~~~~ 89 (363)
.++...+.+
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 888887765
No 416
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=64.47 E-value=70 Score=25.33 Aligned_cols=111 Identities=12% Similarity=0.141 Sum_probs=67.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH----HHHHHHhHhcCCCCChHHH
Q 044256 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----KKIFNEMKLCNVVPETFTC 247 (363)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 247 (363)
|.+..+-+--.++.+-....+++-+.....+++ +...|+..+|+..++.-..... +.+|+-.. .|.+...
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d----~PhP~~v 242 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCD----EPHPLLV 242 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccC----CCChHHH
Confidence 445555444445555444455554555555544 4567788887776665432210 22222222 4777788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Q 044256 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290 (363)
Q Consensus 248 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 290 (363)
..++..|.+ +++++|.+++.++-+.|+.|. ...+.+.+.+-
T Consensus 243 ~~ml~~~~~-~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~K 283 (333)
T KOG0991|consen 243 KKMLQACLK-RNIDEALKILAELWKLGYSPE-DIITTLFRVVK 283 (333)
T ss_pred HHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHH
Confidence 888887764 689999999999999998874 44555555543
No 417
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=64.45 E-value=54 Score=28.41 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhC--C-----CCccHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 044256 281 IFNSLIRGCCKFGIFEIASELFNKLSCK--N-----LVADVVAYNILIHALGKEGQIKKENYLLLSME 341 (363)
Q Consensus 281 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 341 (363)
+...|++.++-.||+..|+++++.+.-. + ..-.+.+|..+.-+|.-.+++.+|.+.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777776655321 1 11134455555666777777777777776654
No 418
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.04 E-value=74 Score=25.45 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhC----C-CCccHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 044256 280 EIFNSLIRGCCKFGIFEIASELFNKLSCK----N-LVADVVAYNILIHALGKEGQIKKENYLLLSME 341 (363)
Q Consensus 280 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 341 (363)
.....+...|...|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+.=+|.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34456677788888888888888877421 2 12334555666677777888887777655543
No 419
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=63.91 E-value=25 Score=23.95 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=26.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChh
Q 044256 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIK 331 (363)
Q Consensus 285 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 331 (363)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444555666666776666655555555555556666655443
No 420
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=63.73 E-value=1.2e+02 Score=27.91 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 044256 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGC 345 (363)
Q Consensus 278 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 345 (363)
+.....-++..|.+.|-.+.|.++.+.+-..- ....-|..-+.-+.+.|+...+..+.+.+.+...
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~ 469 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYC 469 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 34455677888889998888888888765542 2344566777778888888888777777765433
No 421
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.70 E-value=37 Score=27.14 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 63 DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127 (363)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 127 (363)
-.+..-|.+.|++++|.++|+.+...-. .++=..+...+...+..++.+.|+.+..+.+.-++.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr-~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYR-REGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3466778899999999999998853210 000024455667777888888999988887766654
No 422
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.51 E-value=43 Score=22.58 Aligned_cols=79 Identities=10% Similarity=0.009 Sum_probs=47.0
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 82 (363)
..++|..+.+++...+.. ...+--.-+..+.+.|++++|+. .- .....||...|..| +-.+.|..+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~ALl---~~-~~~~~pdL~p~~AL--~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEALL---LP-QCHCYPDLEPWAAL--CAWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHHHH---HH-TTS--GGGHHHHHH--HHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHHHH---hc-ccCCCccHHHHHHH--HHHhhccHHHHHHHH
Confidence 467888898988885432 22222223344678899999922 11 12236777776554 456888888888888
Q ss_pred HHHHhcc
Q 044256 83 QEMVNGM 89 (363)
Q Consensus 83 ~~~~~~~ 89 (363)
.++...+
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 8887665
No 423
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=63.29 E-value=20 Score=24.63 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=19.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccC
Q 044256 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328 (363)
Q Consensus 285 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 328 (363)
++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 33444444445555555555555444444444333344444443
No 424
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=63.11 E-value=89 Score=26.08 Aligned_cols=26 Identities=8% Similarity=-0.042 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 044256 62 CDTLITGLRRTGNMNLTLKLHQEMVN 87 (363)
Q Consensus 62 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 87 (363)
+-....-|++.|+-+.|.+.+....+
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445556666666666665554443
No 425
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.69 E-value=1e+02 Score=26.63 Aligned_cols=184 Identities=11% Similarity=-0.027 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCC
Q 044256 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKG--FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240 (363)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 240 (363)
..+.-+.+.|..+|+++.|++.|.+.++.- ..-....|..+|..-.-.|+|.....+..+..... .. ... ....+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~-~~-~~~-~~q~v 227 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP-DA-NEN-LAQEV 227 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc-hh-hhh-HHHhc
Confidence 456778889999999999999999866541 11233455566666667788888887777665432 00 111 11123
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc------CcchHHHHHHHHHHHHhcCChHHHHH-----HHHHhhhCC
Q 044256 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN------CELFVEIFNSLIRGCCKFGIFEIASE-----LFNKLSCKN 309 (363)
Q Consensus 241 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~-----~~~~~~~~~ 309 (363)
++-...+..+...+. +++..|.+.|-...... +.|...+.-..+.+++..++-+--.. .|....+.
T Consensus 228 ~~kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel- 304 (466)
T KOG0686|consen 228 PAKLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL- 304 (466)
T ss_pred CcchHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc-
Confidence 334444444444433 46677766654433221 12333333333444444443332222 23333322
Q ss_pred CCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHH
Q 044256 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEEN-----GCALDVDTFNTLMI 357 (363)
Q Consensus 310 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~ 357 (363)
.+..+..+...| .+++...+++++++... -+.|...+.-.+|+
T Consensus 305 ---~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 ---EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred ---ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 344444444433 46678888888887654 34666666666554
No 426
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=61.70 E-value=92 Score=25.77 Aligned_cols=72 Identities=17% Similarity=0.337 Sum_probs=55.6
Q ss_pred HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHh----------cCChHHH
Q 044256 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK----------FGIFEIA 298 (363)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~a 298 (363)
.++++.+...++.|.-..+.-+.-.+...=.+..++.+|+.+...... |..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 689999999999999988888888888888999999999998865322 5555555543 4777777
Q ss_pred HHHHHHh
Q 044256 299 SELFNKL 305 (363)
Q Consensus 299 ~~~~~~~ 305 (363)
.++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 7776653
No 427
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.17 E-value=87 Score=25.33 Aligned_cols=221 Identities=9% Similarity=0.009 Sum_probs=115.9
Q ss_pred cCCCCCcccHHHHHHH-HHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044256 53 FGCRPNVTTCDTLITG-LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131 (363)
Q Consensus 53 ~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 131 (363)
.+-.||+..=|..-.+ -.+...+++|+.-|+...+..+.- -.........++....+.+++++.+..|.++..-
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEK---geWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY-- 94 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEK---GEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY-- 94 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhccccc---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--
Confidence 3456776654332221 123457889999999888754210 0112334456788888999999999888887642
Q ss_pred CcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcHhHHHHHHHH
Q 044256 132 NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK-----GFMPDVFSYSVLING 206 (363)
Q Consensus 132 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~ 206 (363)
.+....++ -+..+.|.+++.-....+.+.-..+|+.-.+. +-..=-.|-..|...
T Consensus 95 ------------------IkSAVTrN--ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl 154 (440)
T KOG1464|consen 95 ------------------IKSAVTRN--YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKL 154 (440)
T ss_pred ------------------HHHHHhcc--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhh
Confidence 22222221 23445677777666666666665555533221 000111122345566
Q ss_pred HHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CcchHHHHHHH
Q 044256 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-CELFVEIFNSL 285 (363)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l 285 (363)
|...+++.+..++++++.......--..=.+.|. .-...|..-|+.|....+-.+...+|++..... --|.+.+.. .
T Consensus 155 ~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt-QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-v 232 (440)
T KOG1464|consen 155 YFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT-QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-V 232 (440)
T ss_pred heeHHHHHHHHHHHHHHHHHhccccCchhhhccc-hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-H
Confidence 6677777777666665543210000000000111 112356666778887777777777777664332 134444333 3
Q ss_pred HHHH-----HhcCChHHHHH
Q 044256 286 IRGC-----CKFGIFEIASE 300 (363)
Q Consensus 286 i~~~-----~~~~~~~~a~~ 300 (363)
|+-| .+.|.+++|-.
T Consensus 233 IRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 233 IRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HHHcCCccccccchHHHHHh
Confidence 3333 35566666654
No 428
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=61.01 E-value=24 Score=24.61 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHH
Q 044256 41 RDASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLKLHQ 83 (363)
Q Consensus 41 ~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 83 (363)
++..++|..|.+.||-.... -|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55788999999988765544 45666777788999999999986
No 429
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.83 E-value=47 Score=22.12 Aligned_cols=88 Identities=17% Similarity=0.051 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHH
Q 044256 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338 (363)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 338 (363)
..++|..+-+.+...+- ....+-.+=+..+...|++++|..+.+.. ..||...|-.+- -.+.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHH
Confidence 35677777666665431 12222223345677889999999887776 268888887664 357788788888787
Q ss_pred HHHHcCCCCCHHHHHH
Q 044256 339 SMEENGCALDVDTFNT 354 (363)
Q Consensus 339 ~m~~~g~~p~~~~~~~ 354 (363)
+|-.+| .|....|..
T Consensus 93 rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 93 RLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHhCC-CHHHHHHHH
Confidence 887765 455555543
No 430
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.55 E-value=44 Score=21.74 Aligned_cols=18 Identities=11% Similarity=-0.044 Sum_probs=9.0
Q ss_pred HHccCChhHHHHHHHHHH
Q 044256 324 LGKEGQIKKENYLLLSME 341 (363)
Q Consensus 324 ~~~~g~~~~a~~~~~~m~ 341 (363)
....|++++|...+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 344455555555555544
No 431
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=60.16 E-value=38 Score=20.82 Aligned_cols=34 Identities=9% Similarity=-0.043 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcC
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEG 38 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~ 38 (363)
+.+.|.+++..+... -+. ++..||++...+.+++
T Consensus 12 DtEmA~~mL~DLr~d-ekR-sPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDD-EKR-SPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcch-hhc-ChHHHHHHHHHHHHcc
Confidence 356677777766543 233 7889999988777654
No 432
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.72 E-value=1.2e+02 Score=26.31 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=25.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 044256 34 FCMEGNIRDASQLVKKMATFGCRPNVT--TCDTLITGLR--RTGNMNLTLKLHQEMVN 87 (363)
Q Consensus 34 ~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 87 (363)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33566666666666666654 333333 2233333332 23345555555554443
No 433
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.14 E-value=46 Score=21.44 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 044256 6 GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 6 ~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 79 (363)
.+.++++.+.+.|+. +......+-.+-...|+.+.|.+++..+. . .|+ .|...+.++...|.-..|.
T Consensus 20 ~~~~v~d~ll~~~il--T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r--g~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL--TEEDRNRIEAATENHGNESGARELLKRIV-Q--KEG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC--CHHHHHHHHHhccccCcHHHHHHHHHHhc-c--CCc--HHHHHHHHHHHcCchhhhh
Confidence 356788888888765 44555555544446799999999999998 5 344 5778888888887766554
No 434
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=59.05 E-value=84 Score=24.49 Aligned_cols=64 Identities=9% Similarity=-0.006 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHcCCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 044256 4 VLGALMAFGSFIRRCYRPLN----DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLIT 67 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 67 (363)
...|.+.|....+....|.. ......+.....+.|+.++|.+.|.++...+-.........+.+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
No 435
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.68 E-value=91 Score=24.78 Aligned_cols=102 Identities=11% Similarity=-0.117 Sum_probs=61.8
Q ss_pred HHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHhccCcchH-HHHHH
Q 044256 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT-CNIFIDGLCKNGHVLEVMELFPTLEISNCELFV-EIFNS 284 (363)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 284 (363)
|....+++.|+..+.+.+.. .|+..+ |+.=+-++.+..+++.+..--+..++. .||. ...--
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--------------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~f 83 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYF 83 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHH
Confidence 33445666666665555443 366644 455566677788888777766666554 3443 33344
Q ss_pred HHHHHHhcCChHHHHHHHHHhh----hCCCCccHHHHHHHHHHH
Q 044256 285 LIRGCCKFGIFEIASELFNKLS----CKNLVADVVAYNILIHAL 324 (363)
Q Consensus 285 li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~ 324 (363)
+..+......+++|+..+++.. +..+++....+..|..+=
T Consensus 84 lg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 84 LGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 5556667778888888877763 334555556666665543
No 436
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.61 E-value=1.6e+02 Score=27.51 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcHhHHHHHHHHHHhcCChh
Q 044256 167 PLLNGYCLVGKVNVAIALFDSMARK--GFMPDVFSYSVLINGYCKNFNVE 214 (363)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 214 (363)
+|+.+|...|++..+.++++.+... |-+.-...||..++.+.+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 7889999999999999999988765 22333456777888888888665
No 437
>PRK09462 fur ferric uptake regulator; Provisional
Probab=58.38 E-value=67 Score=23.15 Aligned_cols=60 Identities=8% Similarity=0.079 Sum_probs=31.0
Q ss_pred HHhccCcchHHHHHHHHHHHHhc-CChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCCh
Q 044256 270 LEISNCELFVEIFNSLIRGCCKF-GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQI 330 (363)
Q Consensus 270 ~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 330 (363)
+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 33445444332 22333333333 34666777777776665555555555555666655544
No 438
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=58.31 E-value=39 Score=22.88 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=18.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 044256 30 LIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60 (363)
Q Consensus 30 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 60 (363)
+++.+.++...++|+++.+.|.++| ..+..
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e 96 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPE 96 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 5555666666777777777777666 33433
No 439
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=57.81 E-value=47 Score=21.17 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=19.8
Q ss_pred CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044256 193 FMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225 (363)
Q Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (363)
+.|+...|+.++......+...-|..++.+...
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~ 44 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVD 44 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHHcC
Confidence 456666666666666666666666555555443
No 440
>PRK09857 putative transposase; Provisional
Probab=57.55 E-value=1.1e+02 Score=25.30 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 044256 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348 (363)
Q Consensus 282 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 348 (363)
+..++....+.++.++..++++.+.+. .+.......++..-+.+.|.-+++.++.++|+..|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344554445666666666776666554 233344445566666677777778888888888887655
No 441
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=57.33 E-value=64 Score=22.56 Aligned_cols=12 Identities=17% Similarity=-0.003 Sum_probs=6.4
Q ss_pred HHHHHHHHHhcc
Q 044256 78 TLKLHQEMVNGM 89 (363)
Q Consensus 78 a~~~~~~~~~~~ 89 (363)
..++|..|...+
T Consensus 82 p~~if~~L~~~~ 93 (125)
T smart00777 82 PRELFQFLYSKG 93 (125)
T ss_pred HHHHHHHHHHCC
Confidence 455565555544
No 442
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=57.05 E-value=30 Score=28.48 Aligned_cols=80 Identities=6% Similarity=-0.133 Sum_probs=60.2
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHH-HHHHHHhcCChhHHHHHHHHHHhccCCCCCccC
Q 044256 19 YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT-LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97 (363)
Q Consensus 19 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 97 (363)
-.|.|+..|...+....+.|.+.+.-.+|.+.++.. +.|+..|.. --.-+...++++.+..+|......+ +
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-------~ 173 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-------S 173 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-------C
Confidence 356689999999998889999999999999998874 556777643 2233456789999999999888765 4
Q ss_pred CchhhHHHH
Q 044256 98 PNVFCYGSL 106 (363)
Q Consensus 98 ~~~~~~~~l 106 (363)
.++..|...
T Consensus 174 ~~p~iw~ey 182 (435)
T COG5191 174 RSPRIWIEY 182 (435)
T ss_pred CCchHHHHH
Confidence 445555543
No 443
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.85 E-value=1.3e+02 Score=26.13 Aligned_cols=71 Identities=25% Similarity=0.229 Sum_probs=36.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcch----------hhhccCChHHHHHHHHHHHHcCCCCchh--hHHHHHHHHHhc
Q 044256 108 DGLCKDRLVDQTKDLFMEMKDKGINANT----------LLCKKTKLVEANRLLELMMQRGLNPVIF--TYTPLLNGYCLV 175 (363)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~ 175 (363)
...++.|+.+-+..+ .+.|..++. ..+..|+.+ +.+.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 334556776554444 445655443 333445543 444455556544422 122344556677
Q ss_pred CCHHHHHHHHH
Q 044256 176 GKVNVAIALFD 186 (363)
Q Consensus 176 ~~~~~a~~~~~ 186 (363)
|+.+.+..+++
T Consensus 79 g~~~~v~~Ll~ 89 (413)
T PHA02875 79 GDVKAVEELLD 89 (413)
T ss_pred CCHHHHHHHHH
Confidence 88877666654
No 444
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=55.15 E-value=74 Score=22.65 Aligned_cols=66 Identities=8% Similarity=-0.116 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHHhcCC---hHHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 277 LFVEIFNSLIRGCCKFGI---FEIASELFNKLSCKNLVA-DVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 277 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
++..+-..+..++.+..+ ..+...+++.+.+...+- .......+.-++.+.+++++++++.+.+++
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444444444432 444455555555421111 122222333455566666666666666665
No 445
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.95 E-value=1.2e+02 Score=25.08 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044256 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225 (363)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (363)
+.++|...+... ..+.++..+.+.+.-+.-.++| +|+..+-......+...|--+-..-.-.++..
T Consensus 186 ~~~lFk~~~~Ek------~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~ 251 (412)
T KOG2297|consen 186 AVKLFKEWLVEK------DINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE 251 (412)
T ss_pred HHHHHHHHHhhc------cHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044256 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305 (363)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 305 (363)
. .-...-..|..-..+...+++.....++-.+.+--|++.+...+-++......+.+-.++..+-
T Consensus 252 ~---------------a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~q 316 (412)
T KOG2297|consen 252 G---------------ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQ 316 (412)
T ss_pred H---------------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHH
Q ss_pred hhCCCCccHHHHHHHHHHHHccCChhHHH
Q 044256 306 SCKNLVADVVAYNILIHALGKEGQIKKEN 334 (363)
Q Consensus 306 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 334 (363)
.-. ...+|..|+.+++..|+.+-.+
T Consensus 317 alr----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 317 ALR----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHH----HHHhhhHHHHHHhcCChHHHHH
No 446
>PRK11619 lytic murein transglycosylase; Provisional
Probab=54.91 E-value=1.9e+02 Score=27.26 Aligned_cols=80 Identities=9% Similarity=-0.016 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHH
Q 044256 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339 (363)
Q Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 339 (363)
.+++...+....... .+......-+..-...++++.+...+..|.... .-...-..=+.+++...|+.++|..+|+.
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555554433221 233334444555557888888888888876532 22233333456676778999999999999
Q ss_pred HHH
Q 044256 340 MEE 342 (363)
Q Consensus 340 m~~ 342 (363)
+..
T Consensus 372 ~a~ 374 (644)
T PRK11619 372 LMQ 374 (644)
T ss_pred Hhc
Confidence 853
No 447
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.80 E-value=1.2e+02 Score=24.30 Aligned_cols=95 Identities=14% Similarity=-0.018 Sum_probs=61.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc------cCcchHH-----------HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccH
Q 044256 252 DGLCKNGHVLEVMELFPTLEIS------NCELFVE-----------IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV 314 (363)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~-----------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 314 (363)
.-+.+.|++.+|..-|++++.. .-+|... .+...-.++...|++-++++.-.++.... +-|.
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~nv 264 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNV 264 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchH
Confidence 3456778888887777665411 1123222 22233344556688888988888888774 5577
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 044256 315 VAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349 (363)
Q Consensus 315 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 349 (363)
..|-.-..+.+..=+.++|..-|...++ +.|..
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~--ldpsl 297 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPSL 297 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChhh
Confidence 7777777777777777888888888877 34543
No 448
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=52.75 E-value=79 Score=26.59 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHcCCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 044256 6 GALMAFGSFIRRCYRPLN----DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLR 70 (363)
Q Consensus 6 ~A~~~~~~~~~~~~~p~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 70 (363)
++..+++.+.+. -| + +.-|..+++.....|.+++++.+|++....|-.|=...-..++..+-
T Consensus 121 ei~~~L~~li~~--IP-~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 121 EILATLSDLIKN--IP-DAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHhc--Cc-hHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 445555555443 33 3 34566677777777777777777777777776666655555555543
No 449
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.54 E-value=1.3e+02 Score=24.70 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=37.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 044256 59 VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS-LIDGLCKDRLVDQTKDLFMEMKDKGINAN 134 (363)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 134 (363)
...+..+...|++.++.+.+.++..+..+.....+ .+.|+..... |.-.|....-+++.++..+.|.+.|...+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 34556667777777777777776665544331110 3333322221 22223333335566666666666655443
No 450
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=52.00 E-value=2.1e+02 Score=29.01 Aligned_cols=160 Identities=9% Similarity=-0.061 Sum_probs=93.4
Q ss_pred hcCCHHHHHH------HHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHH
Q 044256 174 LVGKVNVAIA------LFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTC 247 (363)
Q Consensus 174 ~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (363)
..|.+.++.+ ++......-.++....|..+...+.+.++.++|+..-.+.. -+.+.+......-+...|
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~-----ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKAC-----IISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccce-----eeechhccCCCHHHHHHh
Confidence 3445554544 55422222234456678888888889999999986654432 111222222222334456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-------cCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----C--CCcc
Q 044256 248 NIFIDGLCKNGHVLEVMELFPTLEIS-------NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-----N--LVAD 313 (363)
Q Consensus 248 ~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~ 313 (363)
..+.-.+...++...|...+...... ..||...+++.+-..+-..++++.|.++.+.+... | --.+
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 66655566666777777777665432 13444555555555555668899999988887653 1 0234
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHH
Q 044256 314 VVAYNILIHALGKEGQIKKENYLLL 338 (363)
Q Consensus 314 ~~~~~~li~~~~~~g~~~~a~~~~~ 338 (363)
..++..+.+.+...+++..|....+
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 5667777777777777777655433
No 451
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=51.95 E-value=2.8e+02 Score=28.29 Aligned_cols=147 Identities=10% Similarity=-0.043 Sum_probs=80.9
Q ss_pred cCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 044256 96 YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175 (363)
Q Consensus 96 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (363)
.++....|..+...+-+.++.++|+..-....-. -+.+...+.+-+...|..+...+...
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii--------------------~eR~~g~ds~~t~~~y~nlal~~f~~ 1028 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACII--------------------SERVLGKDSPNTKLAYGNLALYEFAV 1028 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceee--------------------echhccCCCHHHHHHhhHHHHHHHhc
Confidence 3455667777777788888887777654433210 11111122222344555555555566
Q ss_pred CCHHHHHHHHHHHHHc-----C--CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHH
Q 044256 176 GKVNVAIALFDSMARK-----G--FMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248 (363)
Q Consensus 176 ~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (363)
++...|...+...... | .+|...+++.+-..+...++++.|+++++.+.... +......-..+..++.
T Consensus 1029 ~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~-----~~v~g~~~l~~~~~~~ 1103 (1236)
T KOG1839|consen 1029 KNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN-----KKVLGPKELETALSYH 1103 (1236)
T ss_pred cCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH-----hhhcCccchhhhhHHH
Confidence 6777777766655432 2 34444455555444555688899988888776532 1111111123555666
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 044256 249 IFIDGLCKNGHVLEVMELF 267 (363)
Q Consensus 249 ~ll~~~~~~~~~~~a~~~~ 267 (363)
.+...+...+++..|....
T Consensus 1104 ~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1104 ALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 6666666666666554443
No 452
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=51.89 E-value=57 Score=26.95 Aligned_cols=79 Identities=11% Similarity=0.023 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHH-HHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHH
Q 044256 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNS-LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319 (363)
Q Consensus 241 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (363)
..|+..|...+....+.|.+.+.-.++.+..+.. |.|+..|.. --.-+...++++.+..+|....+.+ +.++..|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHHH
Confidence 4567777777776677788888888998888775 777777654 3334567789999999999988875 335666654
Q ss_pred HH
Q 044256 320 LI 321 (363)
Q Consensus 320 li 321 (363)
..
T Consensus 182 yf 183 (435)
T COG5191 182 YF 183 (435)
T ss_pred HH
Confidence 43
No 453
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.16 E-value=57 Score=20.53 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 044256 29 SLIKGFCMEGNIRDASQLVKKMATFGCRPNVT 60 (363)
Q Consensus 29 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 60 (363)
++++.+.++.--++|+++++.|.++| ..+..
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 46666777777788888888888777 34433
No 454
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.05 E-value=1.3e+02 Score=24.31 Aligned_cols=143 Identities=15% Similarity=0.089 Sum_probs=65.9
Q ss_pred HHhcCCHHHHHHHHH----HHHhcCCCCCcccHHHHHHHHHhcCChh-HHHHHHHHHHhccCCCCCccCCchhhHHHHHH
Q 044256 34 FCMEGNIRDASQLVK----KMATFGCRPNVTTCDTLITGLRRTGNMN-LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108 (363)
Q Consensus 34 ~~~~~~~~~a~~~~~----~m~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 108 (363)
+.+.|+...|-++-. -..+.+.++|......++..+...+.-+ .-.++.+.+++.. ..+....-++.....+..
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHH
Confidence 344444444433332 2233455555555555555555443221 2334444444333 111113456778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHH--HHHHHHHHcCCCCchhhH-HHHHHHHHhcCCHHHHHHHH
Q 044256 109 GLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEAN--RLLELMMQRGLNPVIFTY-TPLLNGYCLVGKVNVAIALF 185 (363)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~ 185 (363)
.|.+.|++..|...|-.-. +.+... .++......+.+.+...| .-.+-.|.-.++...|...+
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~--------------~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~ 164 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGT--------------DPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELF 164 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS---------------HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHhcC--------------ChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999988887663211 111111 123333333333222222 22333455678899998888
Q ss_pred HHHHHc
Q 044256 186 DSMARK 191 (363)
Q Consensus 186 ~~~~~~ 191 (363)
+...+.
T Consensus 165 ~~f~~~ 170 (260)
T PF04190_consen 165 DTFTSK 170 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
No 455
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.93 E-value=1.4e+02 Score=24.53 Aligned_cols=130 Identities=17% Similarity=0.076 Sum_probs=69.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHH-------HHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCC
Q 044256 168 LLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY-------SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240 (363)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 240 (363)
+.+-..+.+++++|+..+.++...|+..|..+. ..+...|.+.|+...--+...... ..|..-.-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr--------e~m~~ftk 80 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR--------EAMEDFTK 80 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH--------HHHHHhcc
Confidence 445556778888888888888888876665443 346667777777766544332211 11111111
Q ss_pred CCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHhccCcc-----hHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044256 241 VPETFTCNIFIDGLCKN-GHVLEVMELFPTLEISNCEL-----FVEIFNSLIRGCCKFGIFEIASELFNKL 305 (363)
Q Consensus 241 ~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~ 305 (363)
+........++.-+... ..++..+.+....++...+. ....-.-++..+.+.|.+.+|..+...+
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 11223334444443322 23444444444443322111 1122345777888889988888765543
No 456
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.83 E-value=76 Score=21.48 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHH
Q 044256 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336 (363)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 336 (363)
....++|..+.+.+...+. -...+-.+-+..+.+.|++++| +..-... ..||...|-.+ +-.+.|--+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL--~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAAL--CAWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHH--HHHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHH--HHHhhccHHHHHHH
Confidence 4457888888888887652 2333334445667888999999 2222222 36788877665 44678888888888
Q ss_pred HHHHHHcCCCCCHHHH
Q 044256 337 LLSMEENGCALDVDTF 352 (363)
Q Consensus 337 ~~~m~~~g~~p~~~~~ 352 (363)
+.++-.+| .|....|
T Consensus 92 l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 92 LTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHCT-S-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 88776654 3444443
No 457
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=50.45 E-value=66 Score=20.66 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=21.0
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 044256 300 ELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSME 341 (363)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 341 (363)
++|+-....|+..|+..|..++..+.-.=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444445555555555555554444444445555555544
No 458
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=49.47 E-value=49 Score=18.89 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH
Q 044256 28 NSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCD 63 (363)
Q Consensus 28 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 63 (363)
..+.-++.+.|++++|.+..+.+++. .|+..-..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHH
Confidence 34555678888999999988888876 67654433
No 459
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=49.29 E-value=1.4e+02 Score=26.80 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=57.9
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhc
Q 044256 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238 (363)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (363)
+.+...|-..+.-|...++|+.|.++-+...+. ..|..+.....+..+..-+...+..+.+.+.-..++.++..
T Consensus 570 pisV~py~~iL~e~~sssKWeqavRLCrfv~eq------TMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~l 643 (737)
T KOG1524|consen 570 PISVNPYPEILHEYLSSSKWEQAVRLCRFVQEQ------TMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKAL 643 (737)
T ss_pred eeeccccHHHHHHHhccchHHHHHHHHHhccch------HHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhcc
Confidence 445666788888899999999999987665433 45666655555555554444444433333222444444443
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044256 239 NVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269 (363)
Q Consensus 239 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 269 (363)
|+..+-.+. ...-.|+..+|..++..
T Consensus 644 ---tske~~mA~--~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 644 ---TSKEEQMAE--NSLMLGRMLEAETILLH 669 (737)
T ss_pred ---CcHHHHHHH--HHHHhccchhhhHHHHh
Confidence 343333222 22345777777777654
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.61 E-value=1.1e+02 Score=22.74 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=44.1
Q ss_pred HHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChh
Q 044256 13 SFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76 (363)
Q Consensus 13 ~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 76 (363)
.+.+.|..+ + ..=..++..+...++.-.|.++++.+.+.+...+..|..-.+..+...|-..
T Consensus 16 ~L~~~GlR~-T-~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 16 LCAQRNVRL-T-PQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHcCCCC-C-HHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 345566665 3 3344667777777778899999999999887777777666677777777543
No 461
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=48.32 E-value=54 Score=22.26 Aligned_cols=49 Identities=12% Similarity=0.016 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 044256 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215 (363)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (363)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3455566666777888888888887766677776666777777776554
No 462
>PRK09462 fur ferric uptake regulator; Provisional
Probab=47.13 E-value=1.1e+02 Score=22.12 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=40.7
Q ss_pred HHhHhcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCCh
Q 044256 233 NEMKLCNVVPETFTCNIFIDGLCKN-GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF 295 (363)
Q Consensus 233 ~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 295 (363)
+.+...|.+++..-. .++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345566777665433 455555554 46789999999998887555666655556667766644
No 463
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.46 E-value=1.9e+02 Score=24.74 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=31.7
Q ss_pred HhcCCHHHHHHHHHHHHhccCcchHHHHHHHH----HHHHhcCChHHHHHHHHHhhhC
Q 044256 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLI----RGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
.+-++..-+......+.+.++..-..+|.+|= ...++.+..++|.+..-+|.+.
T Consensus 288 ~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~ 345 (422)
T KOG2582|consen 288 TKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIED 345 (422)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 44566666666666666665555555665542 2233556677777766666554
No 464
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=46.44 E-value=1.7e+02 Score=24.32 Aligned_cols=87 Identities=17% Similarity=0.009 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhccC----cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHH
Q 044256 260 VLEVMELFPTLEISNC----ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335 (363)
Q Consensus 260 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 335 (363)
.+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++..... ++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5577788888776421 345556667777778888877766666666543 367777888888888888888888
Q ss_pred HHHHHHHcC-CCCCH
Q 044256 336 LLLSMEENG-CALDV 349 (363)
Q Consensus 336 ~~~~m~~~g-~~p~~ 349 (363)
+++.....+ +++..
T Consensus 223 ~l~~~l~~~~v~~~d 237 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD 237 (324)
T ss_dssp HHHHHHCTSTS-TTT
T ss_pred HHHHHcCCcccccHH
Confidence 888888754 44443
No 465
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.74 E-value=1.7e+02 Score=23.97 Aligned_cols=201 Identities=13% Similarity=-0.028 Sum_probs=0.0
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCChh
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR----TGNMN 76 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~ 76 (363)
.+++..|...+......+........-...........+..+|.++|..+...| .......|...+.. ..+..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHH
Q ss_pred HHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhc-----CCHH--HHHHHHHHHHHcCCCcch---------hhhcc
Q 044256 77 LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD-----RLVD--QTKDLFMEMKDKGINANT---------LLCKK 140 (363)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~--~a~~~~~~~~~~~~~~~~---------~~~~~ 140 (363)
+|...|+...+.| ..+.......+...|..- -..+ .|...|.+....+..... ..--.
T Consensus 131 ~A~~~~~~Aa~~g------~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 131 KALKYYEKAAKLG------NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred HHHHHHHHHHHcC------ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 044256 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG---------------KVNVAIALFDSMARKGFMPDVFSYSVLIN 205 (363)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 205 (363)
.++.+|...|....+.|. ......+- .+...| +...|...+......+..........+-.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 280 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKI 280 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q ss_pred HHHhcCChh
Q 044256 206 GYCKNFNVE 214 (363)
Q Consensus 206 ~~~~~~~~~ 214 (363)
.....+...
T Consensus 281 ~~~~~~~~~ 289 (292)
T COG0790 281 GLSARGSGR 289 (292)
T ss_pred HhhCcCCCc
No 466
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.65 E-value=3e+02 Score=26.96 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=21.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 044256 171 GYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYC 208 (363)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 208 (363)
.|......+.++..++.+....-.++....+.++..|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34455666666666666655444445555555555554
No 467
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=45.44 E-value=65 Score=19.13 Aligned_cols=46 Identities=20% Similarity=0.084 Sum_probs=20.5
Q ss_pred hcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHH-----HccCChhHHHHH
Q 044256 291 KFGIFEIASELFNKLSCKNLVADVVAYNILIHAL-----GKEGQIKKENYL 336 (363)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~a~~~ 336 (363)
..|++-+|-++++.+=.....+....+..+|... .+.|+...|.++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4555555555555554322223444444444432 234555555443
No 468
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.31 E-value=83 Score=20.38 Aligned_cols=54 Identities=17% Similarity=0.050 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHccCC
Q 044256 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA-DVVAYNILIHALGKEGQ 329 (363)
Q Consensus 276 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 329 (363)
|.|...--.+...+...|++++|.+.+-.+....... +...=..++..+.-.|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4556666677777777777777777777766543221 22333444444444444
No 469
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.21 E-value=3.5e+02 Score=27.47 Aligned_cols=99 Identities=9% Similarity=-0.030 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCChhHHHHHHHHH-HHhhHHH-HHHHh
Q 044256 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV----FSYSVLINGYCKNFNVEEAMNVSREM-ILNGFKK-IFNEM 235 (363)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~~ 235 (363)
..+++++.+.....|.+-+|...+- . .||. ....-++-.+..+|.++.-.+ |.-+ ..+.++. +++..
T Consensus 1021 a~~~t~vFnhhldlgh~~qAy~ai~---~---npdserrrdcLRqlvivLfecg~l~~L~~-fpfigl~~eve~~l~esa 1093 (1480)
T KOG4521|consen 1021 ALISTTVFNHHLDLGHWFQAYKAIL---R---NPDSERRRDCLRQLVIVLFECGELEALAT-FPFIGLEQEVEDFLRESA 1093 (1480)
T ss_pred HHHHHHHHHhhhchhhHHHHHHHHH---c---CCcHHHHHHHHHHHHHHHHhccchHHHhh-CCccchHHHHHHHHHHHH
Confidence 3456667777777777776655442 2 2333 234556666677777654432 1100 0000011 33333
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 044256 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELF 267 (363)
Q Consensus 236 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 267 (363)
-+.........|+.|-..+...+++.+|-.++
T Consensus 1094 aRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1094 ARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred hhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 33333333445666666677788888776653
No 470
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=44.10 E-value=86 Score=20.17 Aligned_cols=65 Identities=9% Similarity=0.115 Sum_probs=46.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
+...|..-++...... .+++ ++|+-....|+..|...|..++....-.--++...+++..|....
T Consensus 9 ~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~~ 73 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSGS 73 (88)
T ss_pred hHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHccc
Confidence 4555555554322222 2333 888888888999999999998888877777888888888888654
No 471
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=43.37 E-value=65 Score=19.93 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=22.6
Q ss_pred HhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccC
Q 044256 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328 (363)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 328 (363)
...++.+.+.+++++....|.+|.......+.-+..+.|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345677777777777776665655555555555544444
No 472
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.29 E-value=1.7e+02 Score=23.45 Aligned_cols=96 Identities=17% Similarity=0.004 Sum_probs=65.8
Q ss_pred HHhcCChhHHHHHHHHHHHhhHHHHHHHhH--hcCCCC--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCc
Q 044256 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMK--LCNVVP--------ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276 (363)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 276 (363)
+.+.|++.+|...+++.+. .++.+. +..-.| ....+...-+++...|++-++++.-.++.... +
T Consensus 188 lfk~~~ykEA~~~YreAi~-----~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~ 261 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAII-----CLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-P 261 (329)
T ss_pred hhhhccHHHHHHHHHHHHH-----HHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-C
Confidence 5567777777777766542 112111 111111 12234445566778899999999999998775 7
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 277 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
-|...|..=..+.+..=+..+|.+-|..+.+.
T Consensus 262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 78888888888888888999999999998876
No 473
>PHA00425 DNA packaging protein, small subunit
Probab=43.23 E-value=82 Score=19.68 Aligned_cols=33 Identities=9% Similarity=-0.058 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcC
Q 044256 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEG 38 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~ 38 (363)
.+.|..++..+... .+. ++..||++-..+.+++
T Consensus 15 TE~a~~mL~DL~dd-ekR-tPQLYnAIgKlL~RHk 47 (88)
T PHA00425 15 TEMAQRMLADLKDD-EKR-TPQLYNAIGKLLDRHK 47 (88)
T ss_pred HHHHHHHHHHhcCc-ccc-ChHHHHHHHHHHHHhc
Confidence 45566666655443 223 6788888777666554
No 474
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=43.21 E-value=2.3e+02 Score=24.89 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHH-------
Q 044256 216 AMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG------- 288 (363)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~------- 288 (363)
...+|+-+++-.--++-..+....+.||..+.|-+...++..-..+-...+|+-..+.+ .|-...+.+||-.
T Consensus 155 ~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~I 233 (669)
T KOG3636|consen 155 IFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEI 233 (669)
T ss_pred cchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHH
Confidence 34455554443324566677778889999999999888888888888889999888876 4444334333322
Q ss_pred -HHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 044256 289 -CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325 (363)
Q Consensus 289 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 325 (363)
-.+...-+++.++++.|...--.-|+.-+-+|..-|+
T Consensus 234 Lq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 234 LQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
Confidence 1244567888999988875421224445555555444
No 475
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=42.94 E-value=51 Score=22.65 Aligned_cols=51 Identities=10% Similarity=-0.013 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 044256 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215 (363)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (363)
-..++..+...+.+-.|.++++.+.+.+...+..|.-.-+..+...|-...
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 345667777777788889999999888777777766666666776665443
No 476
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.02 E-value=2.6e+02 Score=25.14 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=65.4
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH----HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 044256 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265 (363)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 265 (363)
..|+.-+......++.. ..|+...++..++.+..... ......+. +..++ .....++.+. +.++++.|..
T Consensus 191 ~egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l--~~~~~-~~i~~li~si-~~~d~~~Al~ 264 (472)
T PRK14962 191 AEGIEIDREALSFIAKR--ASGGLRDALTMLEQVWKFSEGKITLETVHEAL--GLIPI-EVVRDYINAI-FNGDVKRVFT 264 (472)
T ss_pred HcCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH--cCCCH-HHHHHHHHHH-HcCCHHHHHH
Confidence 33555555555555542 34677777777766543110 01111111 22222 3445555554 5689999999
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHHhcCChH------HHHHHHHHhhhCCCCccHHH
Q 044256 266 LFPTLEISNCELFVEIFNSLIRGCCKFGIFE------IASELFNKLSCKNLVADVVA 316 (363)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~ 316 (363)
++..+...|..|....-..+..++-.-|.-+ .+..+++.....|.+-....
T Consensus 265 ~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~ 321 (472)
T PRK14962 265 VLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRL 321 (472)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHH
Confidence 9999999987776555444444444444322 34444555555565544433
No 477
>PF15469 Sec5: Exocyst complex component Sec5
Probab=41.89 E-value=1.5e+02 Score=22.29 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 105 SLIDGLCKDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~ 128 (363)
.-|.-+.+.|+++.+...|.+...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 456667777888888877777654
No 478
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.56 E-value=1.1e+02 Score=20.70 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 102 CYGSLIDGLCKDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 102 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 128 (363)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 589999999999999999999998876
No 479
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=40.28 E-value=1.1e+02 Score=20.22 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 40 IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
.+...+++..-... .....|+..|+.++...+.-..|..+-+.+.+.|
T Consensus 47 ~eq~~qmL~~W~~~--~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNK--TGRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 66667776665554 3456778999999999988888888877766554
No 480
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.16 E-value=2e+02 Score=24.28 Aligned_cols=90 Identities=10% Similarity=-0.006 Sum_probs=57.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccC---cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHcc
Q 044256 251 IDGLCKNGHVLEVMELFPTLEISNC---ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327 (363)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 327 (363)
..-|.+..++..|...|.+-++..+ ..+...|+.=..+-...|++..|+.=....+... +-....|..=..++...
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHHHHHH
Confidence 4456777888888888888776642 2345556655555566688888887777776653 22344444445566667
Q ss_pred CChhHHHHHHHHHH
Q 044256 328 GQIKKENYLLLSME 341 (363)
Q Consensus 328 g~~~~a~~~~~~m~ 341 (363)
.++++|..+.++..
T Consensus 167 e~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHhhhh
Confidence 77666666655543
No 481
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=39.51 E-value=2.7e+02 Score=24.55 Aligned_cols=89 Identities=15% Similarity=0.020 Sum_probs=62.8
Q ss_pred hccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHH--------HHccCChhHHHHHHHHHHHc
Q 044256 272 ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA--------LGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 272 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~ 343 (363)
...+.|+..+.+-+...++..-..+-...+|+-..+.+ .|-.+.+..+|-. -.+...-++++++++.|...
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 34678999999999999988888999999999988875 4444444443321 12345678899999998765
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 044256 344 GCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 344 g~~p~~~~~~~ll~~~~~ 361 (363)
=---|...|-.|.+.|+.
T Consensus 255 L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred cccccchhHHHHHHHHhh
Confidence 333456666677766654
No 482
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=39.27 E-value=83 Score=22.39 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=21.9
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044256 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358 (363)
Q Consensus 325 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 358 (363)
.+.|-..+...++++|.+.|+..+...|+..++-
T Consensus 120 k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 120 KSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 3456666666777777766777666666666553
No 483
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.62 E-value=1.8e+02 Score=22.37 Aligned_cols=31 Identities=10% Similarity=-0.118 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 274 (363)
....+.++..|.-.|+++.|.+.|.-++...
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 3456667777777778888888777777654
No 484
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=38.52 E-value=90 Score=18.79 Aligned_cols=18 Identities=11% Similarity=-0.093 Sum_probs=6.7
Q ss_pred cCChHHHHHHHHHhhhCC
Q 044256 292 FGIFEIASELFNKLSCKN 309 (363)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~ 309 (363)
.+.+-.+..+.+.+...|
T Consensus 10 ~~~P~g~~~l~~~L~~~g 27 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRG 27 (66)
T ss_pred cCCCCCHHHHHHHHHhcC
Confidence 333333333333333333
No 485
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.48 E-value=2.4e+02 Score=23.74 Aligned_cols=96 Identities=11% Similarity=-0.009 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----ccCcchHHHHHHHHH-HHHhcCChHHHHHHHHHhhhCCCCcc----HH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEI----SNCELFVEIFNSLIR-GCCKFGIFEIASELFNKLSCKNLVAD----VV 315 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~----~~ 315 (363)
..+......|++.|+.+.|++.+++..+ .|.+.|...+.+=+. .|....-..+-.+..+.+.+.|-..+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4556677889999999999998877543 366666654443222 23333333444444444555554333 33
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 316 AYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
+|..+- |....++.+|-.+|-+...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 444432 3345678888888777654
No 486
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.41 E-value=3.7e+02 Score=25.81 Aligned_cols=53 Identities=15% Similarity=0.074 Sum_probs=28.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHH
Q 044256 32 KGFCMEGNIRDASQLVKKMATFGCRPN---VTTCDTLITGLRRTGNMNLTLKLHQEMV 86 (363)
Q Consensus 32 ~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 86 (363)
+-+.+.+.+++|+.+-+..... .|. ...+...|..+...|++++|-...-.|.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 3345566666666655443321 221 2234555566666666666666655554
No 487
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=37.85 E-value=1.3e+02 Score=20.29 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhCCC
Q 044256 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG--IFEIASELFNKLSCKNL 310 (363)
Q Consensus 248 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~ 310 (363)
..++..|...++.++|...++++... .-.......++..+...+ .-+....++..+...+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 34566677789999999988886433 122334444444444432 23344556666665553
No 488
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.32 E-value=1.4e+02 Score=23.69 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG 54 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 54 (363)
|+.+.|.+++.+++.. .|.....|..+...--+.|+++.|.+.|++.++..
T Consensus 9 ~D~~aaaely~qal~l--ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 9 GDAEAAAELYNQALEL--APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred CChHHHHHHHHHHhhc--CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 5667777777777764 66567778888887788888888888888877653
No 489
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.07 E-value=2.3e+02 Score=22.99 Aligned_cols=101 Identities=16% Similarity=0.036 Sum_probs=44.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHH----HHHHHHcCCCCchhhHHHHHHHHHhcCCHH-HHHHHHHH
Q 044256 113 DRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRL----LELMMQRGLNPVIFTYTPLLNGYCLVGKVN-VAIALFDS 187 (363)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~ 187 (363)
.+++++|.+++..-.. .+.+.++...|.++ ++-..+.+.+++......++..+...+.-+ .-.++.+.
T Consensus 3 ~kky~eAidLL~~Ga~-------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ 75 (260)
T PF04190_consen 3 QKKYDEAIDLLYSGAL-------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKA 75 (260)
T ss_dssp TT-HHHHHHHHHHHHH-------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHH
T ss_pred cccHHHHHHHHHHHHH-------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 4555566655544322 23333444433332 233334455556555555655555443221 22233333
Q ss_pred HHHc---C--CCCcHhHHHHHHHHHHhcCChhHHHHHH
Q 044256 188 MARK---G--FMPDVFSYSVLINGYCKNFNVEEAMNVS 220 (363)
Q Consensus 188 ~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (363)
+.++ | ..-|+.....+...|.+.+++.+|...|
T Consensus 76 ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 76 AIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3322 1 1225566677777788888888877655
No 490
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=36.40 E-value=1.6e+02 Score=20.94 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch
Q 044256 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT 135 (363)
Q Consensus 102 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 135 (363)
++..++--+...|+++.|+++.+-.++.|.....
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~ 83 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPD 83 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccc
Confidence 5556666788999999999999999998876554
No 491
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=35.83 E-value=1.4e+02 Score=20.39 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=5.5
Q ss_pred CCCCHHHHHHHHHH
Q 044256 345 CALDVDTFNTLMIS 358 (363)
Q Consensus 345 ~~p~~~~~~~ll~~ 358 (363)
...|..++...+++
T Consensus 78 ~~~d~~~l~~~~~~ 91 (113)
T PF08870_consen 78 PELDDEELPKYFKL 91 (113)
T ss_pred CCCCHHHHHHHHHH
Confidence 33344444443333
No 492
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.82 E-value=3.3e+02 Score=24.53 Aligned_cols=107 Identities=14% Similarity=0.019 Sum_probs=71.7
Q ss_pred HHHhcCCHHHHHHHHHHHH---hccCcchH-----HHHHHHHHHHHhcCChHHHHHHHHHhhh-------CCCCcc----
Q 044256 253 GLCKNGHVLEVMELFPTLE---ISNCELFV-----EIFNSLIRGCCKFGIFEIASELFNKLSC-------KNLVAD---- 313 (363)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~~---- 313 (363)
.+.-.|++.+|.+++-..- ..|...++ ..||.|...+.+.|.+..+..+|.+..+ .|+.|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 4456799999998876542 12222221 2245566666677777777777776653 354442
Q ss_pred -------HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 314 -------VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 314 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
..+||. .-.|...|++-.|.+.|.+.... ++-++..|-.|..+|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 234443 34577889999999999998875 77889999999988864
No 493
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=35.66 E-value=40 Score=20.12 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=9.8
Q ss_pred hhhhHHHHHHHHHHcCCCC
Q 044256 3 KVLGALMAFGSFIRRCYRP 21 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p 21 (363)
|++.|...|..+...|--|
T Consensus 40 d~~~Al~~F~~lk~~~~IP 58 (63)
T smart00804 40 DYERALKNFTELKSEGSIP 58 (63)
T ss_pred CHHHHHHHHHHHHhcCCCC
Confidence 4455555555555444344
No 494
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.59 E-value=3.8e+02 Score=25.18 Aligned_cols=91 Identities=19% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-------------ccHHHHHHH
Q 044256 254 LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV-------------ADVVAYNIL 320 (363)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~l 320 (363)
+......+-...+-+.+.+.|+..+......++. ...|++..+..+++++...+.. ++......+
T Consensus 180 f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~L 257 (618)
T PRK14951 180 LRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRL 257 (618)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHH
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCC
Q 044256 321 IHALGKEGQIKKENYLLLSMEENGCAL 347 (363)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~m~~~g~~p 347 (363)
+.++.. |+...++.+++++.+.|..|
T Consensus 258 ldaL~~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 258 IDALAQ-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHcCCCH
No 495
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.44 E-value=2.2e+02 Score=22.43 Aligned_cols=96 Identities=13% Similarity=0.198 Sum_probs=61.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CcccHH--HHHHHHHhcCChhHHHHHHHHHHhccCCCCCccC
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRP---NVTTCD--TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 97 (363)
...-+|.|+--|.-...+.+|...|.. ..|+.| |..+++ ..|......|+.+.|.+....+-..- +.
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pei------Ld 96 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEI------LD 96 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHH------Hc
Confidence 566677777777777777778777744 445555 333332 35677789999999999988876543 44
Q ss_pred CchhhHHHHHH----HHHhcCCHHHHHHHHHHH
Q 044256 98 PNVFCYGSLID----GLCKDRLVDQTKDLFMEM 126 (363)
Q Consensus 98 ~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~ 126 (363)
.|...+-.|.. =..+.|..++|++..+.=
T Consensus 97 ~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 97 TNRELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45444443332 245667777777776653
No 496
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=35.29 E-value=1.6e+02 Score=20.84 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=22.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhccC
Q 044256 61 TCDTLITGLRRTGNMNLTLKLHQEMVNGMG 90 (363)
Q Consensus 61 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 90 (363)
.+..++--+...|+++.|+++.+.+++.+-
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 445556666788888888888888888874
No 497
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=35.11 E-value=1e+02 Score=30.42 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044256 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRP 57 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 57 (363)
+.+++++|..|...|+-+.....|-.....+.+.+.+.+|..+|+.-++..-.|
T Consensus 94 ~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP 147 (974)
T KOG1166|consen 94 LQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEP 147 (974)
T ss_pred HhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 455566666666665555444455555555566666666666666555443333
No 498
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.90 E-value=3.7e+02 Score=24.79 Aligned_cols=162 Identities=12% Similarity=0.002 Sum_probs=97.2
Q ss_pred cCCHHHHHHHHHHHHHcC--------CCCcHhHHHH---HHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC-
Q 044256 175 VGKVNVAIALFDSMARKG--------FMPDVFSYSV---LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP- 242 (363)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (363)
...+++|...|....... +..++++... +..++...|+.+.+-.++++.+ -.++......+.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L-----y~~d~a~hp~F~~~ 325 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL-----YVFDRALHPNFIPF 325 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH-----HHHHHHhccccccc
Confidence 445667777776554431 1113344444 4456778899888887777654 3333333332222
Q ss_pred ------------ChHHHHHH---HHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHH-hcCChHHHHHHHHHhh
Q 044256 243 ------------ETFTCNIF---IDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC-KFGIFEIASELFNKLS 306 (363)
Q Consensus 243 ------------~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~ 306 (363)
+...|-++ |+...+.|-+..|.+.-+.+......-|+.....+|+.|+ ++.++.--+++++...
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22334333 4556788999999999999888764447888888888876 6677888888877765
Q ss_pred hC---CCCccHHHHHHHHHHHHccCC---hhHHHHHHHHHH
Q 044256 307 CK---NLVADVVAYNILIHALGKEGQ---IKKENYLLLSME 341 (363)
Q Consensus 307 ~~---~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~ 341 (363)
.. ..-||-.--.++...|.+... .+.|...+.+..
T Consensus 406 ~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 406 NMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred hhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 43 234555444455566665444 334444444433
No 499
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.67 E-value=4.2e+02 Score=25.36 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=22.2
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044256 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272 (363)
Q Consensus 236 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (363)
...|+..+......++... .|+...++.+++++..
T Consensus 192 ~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 192 DSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 4456666666666555543 4777777777776654
No 500
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=34.35 E-value=71 Score=16.40 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 044256 27 FNSLIKGFCMEGNIRDASQLV 47 (363)
Q Consensus 27 ~~~li~~~~~~~~~~~a~~~~ 47 (363)
+..+.-.+-..|++++|.++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 344455556667777777763
Done!