Query 044256
Match_columns 363
No_of_seqs 590 out of 1296
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 22:43:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 4.4E-35 1.5E-39 253.0 23.4 202 148-361 11-222 (501)
2 2xpi_A Anaphase-promoting comp 100.0 3.4E-32 1.2E-36 244.0 36.3 352 1-363 97-530 (597)
3 2xpi_A Anaphase-promoting comp 100.0 4.8E-32 1.6E-36 243.0 36.6 343 1-363 130-564 (597)
4 4g26_A Pentatricopeptide repea 100.0 1.5E-33 5E-38 243.5 23.6 207 6-257 8-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-28 4.7E-33 208.9 40.2 341 2-359 13-383 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 8.3E-28 2.8E-32 204.1 41.1 299 3-328 82-387 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 3.4E-25 1.2E-29 191.7 35.3 318 5-352 9-365 (450)
8 2y4t_A DNAJ homolog subfamily 100.0 2.3E-24 7.9E-29 186.5 36.6 312 1-340 39-406 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.9E-23 6.5E-28 183.8 34.5 332 1-342 19-477 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 9E-22 3.1E-26 164.9 37.2 301 1-358 16-349 (359)
11 2gw1_A Mitochondrial precursor 99.9 2.2E-22 7.4E-27 177.1 34.0 302 2-309 53-479 (514)
12 3fp2_A TPR repeat-containing p 99.9 2.5E-21 8.7E-26 171.2 35.0 323 1-343 38-491 (537)
13 3hym_B Cell division cycle pro 99.9 7.9E-21 2.7E-25 157.3 33.9 294 21-331 19-322 (330)
14 1fch_A Peroxisomal targeting s 99.9 1.3E-21 4.5E-26 164.6 25.1 282 24-341 64-357 (368)
15 3hym_B Cell division cycle pro 99.9 3.7E-20 1.3E-24 153.3 30.8 271 1-296 35-322 (330)
16 3ieg_A DNAJ homolog subfamily 99.9 2.9E-19 9.9E-24 149.6 35.1 302 23-363 2-320 (359)
17 4eqf_A PEX5-related protein; a 99.9 1.2E-20 4E-25 158.7 25.3 277 23-339 64-352 (365)
18 3fp2_A TPR repeat-containing p 99.9 2.1E-19 7.1E-24 159.0 32.9 293 23-342 24-406 (537)
19 1fch_A Peroxisomal targeting s 99.9 3.3E-20 1.1E-24 156.1 24.8 281 34-363 35-344 (368)
20 3cv0_A Peroxisome targeting si 99.9 1.4E-19 4.9E-24 149.5 27.0 281 23-341 20-313 (327)
21 4eqf_A PEX5-related protein; a 99.9 1.5E-19 5E-24 152.0 24.9 254 2-305 79-353 (365)
22 3cv0_A Peroxisome targeting si 99.9 3.3E-19 1.1E-23 147.3 26.3 254 1-307 34-314 (327)
23 3mkr_A Coatomer subunit epsilo 99.8 1E-18 3.4E-23 141.5 25.4 250 33-342 8-263 (291)
24 3spa_A Mtrpol, DNA-directed RN 99.8 9.1E-21 3.1E-25 169.4 10.1 119 243-361 126-248 (1134)
25 3mkr_A Coatomer subunit epsilo 99.8 3.8E-18 1.3E-22 138.1 22.7 269 1-335 12-286 (291)
26 2xm6_A Protein corresponding t 99.8 1.5E-15 5.2E-20 132.5 40.6 201 2-225 57-287 (490)
27 3spa_A Mtrpol, DNA-directed RN 99.8 2E-20 6.7E-25 167.3 9.2 141 194-348 124-265 (1134)
28 2ooe_A Cleavage stimulation fa 99.8 2E-16 6.7E-21 139.6 34.0 334 1-359 25-473 (530)
29 2xm6_A Protein corresponding t 99.8 1.2E-15 4.2E-20 133.1 38.0 301 2-345 93-434 (490)
30 1b89_A Protein (clathrin heavy 99.8 4.1E-19 1.4E-23 147.1 14.4 270 2-337 17-292 (449)
31 4g1t_A Interferon-induced prot 99.8 1.4E-16 4.7E-21 138.6 28.8 330 1-352 64-469 (472)
32 3uq3_A Heat shock protein STI1 99.8 1.5E-16 5E-21 126.7 26.0 231 23-306 4-234 (258)
33 1xnf_A Lipoprotein NLPI; TPR, 99.8 4.8E-17 1.6E-21 130.9 21.5 119 2-128 19-139 (275)
34 3uq3_A Heat shock protein STI1 99.8 1.7E-16 5.7E-21 126.4 24.4 244 59-359 5-256 (258)
35 4g1t_A Interferon-induced prot 99.8 4.8E-15 1.6E-19 128.9 33.6 309 23-349 50-405 (472)
36 2pl2_A Hypothetical conserved 99.8 2.1E-16 7.3E-21 122.3 21.2 201 21-272 2-213 (217)
37 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.8E-16 6.3E-21 127.5 20.4 249 34-337 15-269 (275)
38 3u4t_A TPR repeat-containing p 99.8 2.7E-15 9.3E-20 120.4 27.1 250 23-320 2-261 (272)
39 2pl2_A Hypothetical conserved 99.7 5.6E-16 1.9E-20 119.9 21.8 201 97-342 2-213 (217)
40 2h6f_A Protein farnesyltransfe 99.7 9.6E-16 3.3E-20 128.1 24.6 253 20-325 93-364 (382)
41 1b89_A Protein (clathrin heavy 99.7 1.5E-17 5E-22 137.9 12.9 244 36-338 15-264 (449)
42 3u4t_A TPR repeat-containing p 99.7 1.6E-15 5.3E-20 121.9 23.6 246 59-353 3-258 (272)
43 2vq2_A PILW, putative fimbrial 99.7 8.7E-15 3E-19 113.8 26.6 206 20-273 4-211 (225)
44 2ooe_A Cleavage stimulation fa 99.7 5.5E-14 1.9E-18 124.0 34.7 324 11-362 2-438 (530)
45 2ho1_A Type 4 fimbrial biogene 99.7 9.7E-15 3.3E-19 115.8 25.4 199 60-307 38-237 (252)
46 2h6f_A Protein farnesyltransfe 99.7 1E-14 3.5E-19 121.9 26.1 241 60-354 98-357 (382)
47 2ho1_A Type 4 fimbrial biogene 99.7 7.5E-15 2.6E-19 116.4 24.3 212 100-356 37-249 (252)
48 1ouv_A Conserved hypothetical 99.7 7.3E-14 2.5E-18 112.2 30.0 226 21-309 3-252 (273)
49 2q7f_A YRRB protein; TPR, prot 99.7 2E-15 6.9E-20 119.0 20.3 201 23-273 22-222 (243)
50 2vq2_A PILW, putative fimbrial 99.7 8.5E-15 2.9E-19 113.9 23.6 217 97-356 5-222 (225)
51 4a1s_A PINS, partner of inscut 99.7 6.8E-15 2.3E-19 125.5 23.9 289 23-343 47-372 (411)
52 1ouv_A Conserved hypothetical 99.7 1.5E-13 5.2E-18 110.3 30.3 224 58-344 5-252 (273)
53 2q7f_A YRRB protein; TPR, prot 99.7 4.1E-15 1.4E-19 117.2 20.8 200 59-308 23-222 (243)
54 3sf4_A G-protein-signaling mod 99.7 5.7E-15 1.9E-19 125.6 23.2 289 23-343 8-336 (406)
55 3ro2_A PINS homolog, G-protein 99.7 7.1E-15 2.4E-19 121.6 22.1 288 23-343 4-332 (338)
56 4a1s_A PINS, partner of inscut 99.7 1.1E-14 3.7E-19 124.2 22.2 276 1-308 61-372 (411)
57 3sf4_A G-protein-signaling mod 99.7 5.8E-15 2E-19 125.6 19.1 297 1-331 22-364 (406)
58 1xi4_A Clathrin heavy chain; a 99.7 1.4E-12 4.8E-17 121.2 34.2 312 2-361 1063-1413(1630)
59 3ro2_A PINS homolog, G-protein 99.6 2.8E-14 9.4E-19 118.0 21.0 275 1-308 18-332 (338)
60 2ond_A Cleavage stimulation fa 99.6 6.7E-13 2.3E-17 108.5 28.8 236 23-308 7-270 (308)
61 3vtx_A MAMA; tetratricopeptide 99.6 9.7E-14 3.3E-18 104.4 21.5 174 161-352 4-177 (184)
62 2ond_A Cleavage stimulation fa 99.6 6.6E-13 2.2E-17 108.5 27.9 218 76-343 33-270 (308)
63 3ulq_A Response regulator aspa 99.6 1.4E-13 5E-18 116.2 23.7 308 1-343 25-368 (383)
64 4abn_A Tetratricopeptide repea 99.6 3.8E-14 1.3E-18 122.8 20.3 216 3-270 83-318 (474)
65 3e4b_A ALGK; tetratricopeptide 99.6 2.5E-13 8.5E-18 116.9 24.1 301 2-344 17-352 (452)
66 3nf1_A KLC 1, kinesin light ch 99.6 2.7E-14 9.1E-19 116.9 17.1 262 20-307 23-306 (311)
67 1xi4_A Clathrin heavy chain; a 99.6 4.7E-12 1.6E-16 117.8 32.6 251 27-342 1052-1308(1630)
68 4abn_A Tetratricopeptide repea 99.6 8.1E-14 2.8E-18 120.7 20.0 218 39-305 83-318 (474)
69 3ulq_A Response regulator aspa 99.6 3.2E-13 1.1E-17 114.1 22.6 245 30-307 109-367 (383)
70 3nf1_A KLC 1, kinesin light ch 99.6 4.3E-13 1.5E-17 109.6 21.7 222 96-342 23-306 (311)
71 3vtx_A MAMA; tetratricopeptide 99.6 7.9E-13 2.7E-17 99.4 21.3 168 23-227 4-171 (184)
72 3e4b_A ALGK; tetratricopeptide 99.6 5.6E-12 1.9E-16 108.5 26.9 297 4-345 54-389 (452)
73 1hz4_A MALT regulatory protein 99.5 3.6E-11 1.2E-15 101.1 29.1 282 26-342 16-321 (373)
74 3q15_A PSP28, response regulat 99.5 2.3E-11 7.9E-16 102.4 27.0 306 20-342 7-364 (378)
75 1hz4_A MALT regulatory protein 99.5 2.3E-11 8E-16 102.2 26.3 275 1-308 27-322 (373)
76 4i17_A Hypothetical protein; T 99.5 7.1E-12 2.4E-16 97.6 21.4 195 138-357 18-221 (228)
77 3as5_A MAMA; tetratricopeptide 99.5 4.7E-12 1.6E-16 95.0 19.0 166 162-343 8-173 (186)
78 3edt_B KLC 2, kinesin light ch 99.5 2.1E-12 7.1E-17 103.9 17.7 178 160-342 41-280 (283)
79 4gyw_A UDP-N-acetylglucosamine 99.5 3.7E-12 1.3E-16 114.8 20.4 172 19-227 4-175 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.5 4.4E-12 1.5E-16 114.4 20.8 166 161-342 8-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.5 1.1E-11 3.9E-16 92.9 19.0 168 23-227 7-174 (186)
82 4i17_A Hypothetical protein; T 99.4 3.2E-11 1.1E-15 93.9 21.0 105 20-131 3-107 (228)
83 4e6h_A MRNA 3'-END-processing 99.4 8.3E-10 2.8E-14 98.6 31.4 346 2-359 80-584 (679)
84 3q15_A PSP28, response regulat 99.4 3.3E-11 1.1E-15 101.5 20.7 247 28-307 105-364 (378)
85 3edt_B KLC 2, kinesin light ch 99.4 2.3E-11 7.9E-16 97.8 18.5 214 70-308 12-281 (283)
86 1qqe_A Vesicular transport pro 99.4 1.3E-10 4.4E-15 94.1 21.1 217 115-350 32-274 (292)
87 1qqe_A Vesicular transport pro 99.3 6E-10 2.1E-14 90.1 22.0 245 5-308 2-269 (292)
88 4e6h_A MRNA 3'-END-processing 99.3 3.2E-08 1.1E-12 88.5 34.7 142 6-155 50-222 (679)
89 2fo7_A Synthetic consensus TPR 99.3 2.2E-10 7.5E-15 80.8 16.7 130 199-343 3-132 (136)
90 3qky_A Outer membrane assembly 99.3 5.1E-10 1.7E-14 89.0 19.4 191 20-227 11-225 (261)
91 3urz_A Uncharacterized protein 99.3 4.9E-10 1.7E-14 85.7 18.3 172 166-357 8-198 (208)
92 3mv2_B Coatomer subunit epsilo 99.3 2.7E-09 9.1E-14 85.0 22.2 168 98-309 98-283 (310)
93 3mv2_B Coatomer subunit epsilo 99.3 4.9E-09 1.7E-13 83.5 23.3 171 160-350 98-287 (310)
94 2fo7_A Synthetic consensus TPR 99.3 5.5E-10 1.9E-14 78.7 16.4 131 25-191 2-132 (136)
95 3urz_A Uncharacterized protein 99.3 1.7E-10 5.7E-15 88.4 13.9 161 1-202 17-195 (208)
96 3qky_A Outer membrane assembly 99.2 1.1E-09 3.8E-14 87.0 19.0 176 160-349 13-228 (261)
97 2pzi_A Probable serine/threoni 99.2 3.9E-10 1.3E-14 102.1 17.5 174 138-329 402-583 (681)
98 3rjv_A Putative SEL1 repeat pr 99.2 3.6E-09 1.2E-13 81.1 19.8 180 145-348 4-202 (212)
99 3dra_A Protein farnesyltransfe 99.2 4.3E-08 1.5E-12 78.8 26.2 219 5-272 50-286 (306)
100 3dra_A Protein farnesyltransfe 99.2 9E-08 3.1E-12 77.0 27.9 236 35-321 44-300 (306)
101 3qou_A Protein YBBN; thioredox 99.2 1.1E-09 3.8E-14 88.3 17.0 168 159-342 114-283 (287)
102 2pzi_A Probable serine/threoni 99.2 2.5E-09 8.6E-14 96.8 20.1 185 70-305 402-602 (681)
103 2vsy_A XCC0866; transferase, g 99.2 1.1E-09 3.6E-14 97.5 17.3 153 1-191 2-157 (568)
104 2r5s_A Uncharacterized protein 99.2 7.2E-10 2.5E-14 82.4 13.5 164 163-342 7-172 (176)
105 2yhc_A BAMD, UPF0169 lipoprote 99.2 5.5E-09 1.9E-13 81.0 18.8 164 164-343 6-213 (225)
106 2ifu_A Gamma-SNAP; membrane fu 99.2 1.8E-09 6.3E-14 87.9 16.9 240 1-300 4-253 (307)
107 4ga2_A E3 SUMO-protein ligase 99.2 4.7E-10 1.6E-14 80.9 11.9 118 2-129 11-129 (150)
108 4ga2_A E3 SUMO-protein ligase 99.1 4.1E-10 1.4E-14 81.2 10.9 138 173-327 8-147 (150)
109 2r5s_A Uncharacterized protein 99.1 4E-10 1.4E-14 83.8 11.1 60 27-87 9-68 (176)
110 3qou_A Protein YBBN; thioredox 99.1 6.3E-09 2.1E-13 83.8 18.1 168 21-225 114-283 (287)
111 2uy1_A Cleavage stimulation fa 99.1 3.8E-08 1.3E-12 85.3 23.8 104 3-129 10-118 (493)
112 2yhc_A BAMD, UPF0169 lipoprote 99.1 1E-08 3.5E-13 79.4 18.4 185 23-227 3-214 (225)
113 2ifu_A Gamma-SNAP; membrane fu 99.1 9E-09 3.1E-13 83.8 18.0 163 170-341 44-222 (307)
114 2vsy_A XCC0866; transferase, g 99.1 3.8E-09 1.3E-13 93.9 16.8 163 140-319 2-167 (568)
115 2e2e_A Formate-dependent nitri 99.1 3.1E-09 1.1E-13 79.0 13.5 121 1-131 23-146 (177)
116 3rjv_A Putative SEL1 repeat pr 99.1 3.8E-08 1.3E-12 75.4 19.8 174 77-309 4-198 (212)
117 3gyz_A Chaperone protein IPGC; 99.1 4.9E-09 1.7E-13 75.2 13.0 104 19-130 31-134 (151)
118 2uy1_A Cleavage stimulation fa 99.1 3.9E-07 1.4E-11 79.0 27.3 309 2-342 28-412 (493)
119 4gco_A Protein STI-1; structur 99.1 7.3E-09 2.5E-13 72.0 13.5 110 245-358 14-123 (126)
120 3gyz_A Chaperone protein IPGC; 99.0 3.3E-09 1.1E-13 76.1 10.9 102 245-350 37-138 (151)
121 4gco_A Protein STI-1; structur 99.0 7E-09 2.4E-13 72.1 11.8 103 19-129 8-110 (126)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.0 7E-08 2.4E-12 73.9 17.7 128 164-309 8-151 (213)
123 1hh8_A P67PHOX, NCF-2, neutrop 99.0 8.3E-08 2.9E-12 73.5 17.9 144 24-192 6-151 (213)
124 1a17_A Serine/threonine protei 99.0 5.3E-08 1.8E-12 71.2 16.0 131 197-342 13-145 (166)
125 2e2e_A Formate-dependent nitri 99.0 1.5E-08 5E-13 75.3 12.7 134 208-358 21-157 (177)
126 2vgx_A Chaperone SYCD; alterna 99.0 4.4E-09 1.5E-13 75.5 9.4 112 8-129 7-118 (148)
127 4f3v_A ESX-1 secretion system 98.9 1.3E-08 4.6E-13 79.9 12.3 186 2-227 20-238 (282)
128 1p5q_A FKBP52, FK506-binding p 98.9 3.1E-09 1.1E-13 87.7 8.5 114 4-128 129-258 (336)
129 3q7a_A Farnesyltransferase alp 98.9 2.5E-06 8.4E-11 69.5 24.7 184 27-260 57-258 (349)
130 3u3w_A Transcriptional activat 98.9 1.9E-06 6.6E-11 69.5 24.4 173 65-272 81-265 (293)
131 3gw4_A Uncharacterized protein 98.9 7.3E-08 2.5E-12 73.1 15.1 159 175-342 5-175 (203)
132 1na0_A Designed protein CTPR3; 98.9 1.1E-07 3.6E-12 65.7 14.6 116 244-362 9-124 (125)
133 3upv_A Heat shock protein STI1 98.9 5E-08 1.7E-12 67.8 12.9 114 244-359 4-121 (126)
134 1a17_A Serine/threonine protei 98.9 8.3E-08 2.8E-12 70.1 14.6 131 23-189 12-144 (166)
135 2c2l_A CHIP, carboxy terminus 98.9 2.4E-07 8.1E-12 74.3 18.1 100 99-227 3-102 (281)
136 2c2l_A CHIP, carboxy terminus 98.9 4.3E-08 1.5E-12 78.6 13.8 189 22-223 2-196 (281)
137 2vyi_A SGTA protein; chaperone 98.9 1.2E-07 4.1E-12 66.0 14.6 117 198-329 13-129 (131)
138 1na0_A Designed protein CTPR3; 98.9 1.4E-07 4.9E-12 65.0 14.8 115 197-326 9-123 (125)
139 4f3v_A ESX-1 secretion system 98.9 1E-07 3.4E-12 75.0 15.0 131 201-348 106-240 (282)
140 3q7a_A Farnesyltransferase alp 98.9 3.6E-06 1.2E-10 68.5 24.6 171 4-213 70-258 (349)
141 1p5q_A FKBP52, FK506-binding p 98.9 8.3E-08 2.8E-12 79.1 15.4 131 196-342 146-293 (336)
142 2qfc_A PLCR protein; TPR, HTH, 98.9 1.3E-06 4.5E-11 70.5 21.9 177 100-306 75-264 (293)
143 2kck_A TPR repeat; tetratricop 98.8 5.1E-08 1.7E-12 65.9 11.3 104 20-131 2-108 (112)
144 3gw4_A Uncharacterized protein 98.8 2.5E-08 8.7E-13 75.7 10.8 166 1-191 5-176 (203)
145 2qfc_A PLCR protein; TPR, HTH, 98.8 3.2E-07 1.1E-11 74.1 17.8 171 163-342 76-265 (293)
146 3u3w_A Transcriptional activat 98.8 1.2E-07 4.1E-12 76.6 15.2 167 1-190 88-265 (293)
147 2lni_A Stress-induced-phosphop 98.8 1.4E-07 4.9E-12 65.9 13.8 102 20-129 12-113 (133)
148 2lni_A Stress-induced-phosphop 98.8 1.3E-07 4.4E-12 66.2 13.4 58 164-222 18-75 (133)
149 2vgx_A Chaperone SYCD; alterna 98.8 4.6E-08 1.6E-12 70.1 11.1 99 243-343 20-118 (148)
150 2xcb_A PCRH, regulatory protei 98.8 6E-08 2E-12 69.0 11.7 102 20-129 14-115 (142)
151 3dss_A Geranylgeranyl transfer 98.8 1.3E-05 4.3E-10 65.0 25.6 167 5-210 47-240 (331)
152 2xcb_A PCRH, regulatory protei 98.8 5.8E-08 2E-12 69.1 10.5 98 244-343 18-115 (142)
153 4gcn_A Protein STI-1; structur 98.8 1.5E-07 5E-12 65.5 12.3 108 245-355 9-122 (127)
154 3upv_A Heat shock protein STI1 98.8 1.4E-07 4.9E-12 65.4 12.0 99 23-129 3-101 (126)
155 1elw_A TPR1-domain of HOP; HOP 98.8 3E-07 1E-11 62.6 13.6 105 243-351 3-107 (118)
156 2vyi_A SGTA protein; chaperone 98.8 4.4E-07 1.5E-11 63.1 14.6 117 242-361 10-126 (131)
157 3sz7_A HSC70 cochaperone (SGT) 98.7 4.3E-07 1.5E-11 66.3 14.3 102 20-129 7-108 (164)
158 3q49_B STIP1 homology and U bo 98.7 2.1E-07 7.2E-12 65.6 11.6 100 242-343 7-106 (137)
159 1elw_A TPR1-domain of HOP; HOP 98.7 1.3E-06 4.6E-11 59.3 15.4 110 197-321 4-113 (118)
160 4gcn_A Protein STI-1; structur 98.7 1.3E-07 4.3E-12 65.8 10.1 106 23-129 7-112 (127)
161 2kck_A TPR repeat; tetratricop 98.7 3.5E-07 1.2E-11 61.7 12.1 99 243-343 5-106 (112)
162 3q49_B STIP1 homology and U bo 98.7 4.3E-07 1.5E-11 63.9 12.9 102 20-129 5-106 (137)
163 3sz7_A HSC70 cochaperone (SGT) 98.7 9.4E-07 3.2E-11 64.5 14.7 99 243-343 10-108 (164)
164 1elr_A TPR2A-domain of HOP; HO 98.7 4.8E-07 1.6E-11 62.9 12.5 112 244-358 4-121 (131)
165 2fbn_A 70 kDa peptidylprolyl i 98.7 4.7E-08 1.6E-12 74.0 7.6 98 23-128 37-150 (198)
166 2dba_A Smooth muscle cell asso 98.7 1E-06 3.5E-11 62.8 14.2 111 242-356 26-139 (148)
167 1hxi_A PEX5, peroxisome target 98.7 2.6E-07 8.8E-12 63.6 10.5 99 246-348 19-117 (121)
168 4b4t_Q 26S proteasome regulato 98.6 1.4E-05 4.7E-10 68.4 22.7 217 107-342 11-244 (434)
169 2fbn_A 70 kDa peptidylprolyl i 98.6 8.5E-07 2.9E-11 67.0 13.5 161 172-343 14-186 (198)
170 1elr_A TPR2A-domain of HOP; HO 98.6 6.9E-07 2.4E-11 62.1 12.1 106 199-320 6-118 (131)
171 4b4t_Q 26S proteasome regulato 98.6 1.2E-06 4.2E-11 74.9 16.0 201 2-225 18-244 (434)
172 3rkv_A Putative peptidylprolyl 98.6 9.6E-07 3.3E-11 64.3 12.6 111 244-358 11-140 (162)
173 2dba_A Smooth muscle cell asso 98.6 2.4E-06 8.2E-11 60.8 14.4 97 162-273 28-128 (148)
174 3dss_A Geranylgeranyl transfer 98.6 0.00013 4.6E-09 59.0 27.4 233 24-308 26-304 (331)
175 1hxi_A PEX5, peroxisome target 98.6 4.7E-07 1.6E-11 62.3 9.9 97 25-129 18-114 (121)
176 1wao_1 Serine/threonine protei 98.6 3.9E-07 1.4E-11 78.8 11.5 115 1-125 19-135 (477)
177 3k9i_A BH0479 protein; putativ 98.6 2.9E-07 9.9E-12 62.9 8.0 104 256-360 2-108 (117)
178 3k9i_A BH0479 protein; putativ 98.5 3.1E-07 1E-11 62.8 7.8 88 1-89 3-91 (117)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.3E-07 4.4E-12 81.5 7.0 147 4-189 250-413 (457)
180 3ro3_A PINS homolog, G-protein 98.5 3E-06 1E-10 61.2 13.4 139 198-343 10-158 (164)
181 2xev_A YBGF; tetratricopeptide 98.5 3.8E-06 1.3E-10 58.3 13.2 100 248-351 6-111 (129)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 2E-06 6.7E-11 74.1 13.9 130 197-342 268-414 (457)
183 2xev_A YBGF; tetratricopeptide 98.5 3.2E-06 1.1E-10 58.6 12.2 96 26-130 4-106 (129)
184 3ro3_A PINS homolog, G-protein 98.5 5.9E-06 2E-10 59.6 13.7 139 162-307 9-157 (164)
185 1wao_1 Serine/threonine protei 98.4 9.2E-07 3.1E-11 76.5 9.3 121 203-338 12-134 (477)
186 3n71_A Histone lysine methyltr 98.4 3.4E-06 1.2E-10 72.6 12.6 132 171-307 318-463 (490)
187 2if4_A ATFKBP42; FKBP-like, al 98.4 1.8E-06 6.1E-11 71.2 10.5 142 200-343 182-328 (338)
188 3n71_A Histone lysine methyltr 98.4 2.9E-06 9.8E-11 73.1 11.7 133 206-343 318-464 (490)
189 1ihg_A Cyclophilin 40; ppiase 98.4 6.8E-06 2.3E-10 68.5 13.6 134 199-335 225-362 (370)
190 1zu2_A Mitochondrial import re 98.4 2.2E-06 7.4E-11 60.8 8.7 98 2-110 16-134 (158)
191 2hr2_A Hypothetical protein; a 98.4 2.4E-05 8.1E-10 55.6 13.9 112 245-357 12-150 (159)
192 3rkv_A Putative peptidylprolyl 98.3 1.7E-05 5.7E-10 57.6 13.4 66 243-309 62-127 (162)
193 2hr2_A Hypothetical protein; a 98.3 1.1E-05 3.6E-10 57.4 11.1 98 23-129 10-131 (159)
194 2kat_A Uncharacterized protein 98.3 4.3E-06 1.5E-10 56.8 8.9 82 5-89 2-83 (115)
195 1ihg_A Cyclophilin 40; ppiase 98.3 1.6E-05 5.3E-10 66.3 13.5 107 246-356 225-348 (370)
196 1zu2_A Mitochondrial import re 98.2 3.1E-06 1.1E-10 60.0 7.1 103 255-361 13-136 (158)
197 2if4_A ATFKBP42; FKBP-like, al 98.2 6.8E-06 2.3E-10 67.7 10.3 130 163-308 180-328 (338)
198 1dce_A Protein (RAB geranylger 98.2 5.8E-05 2E-09 66.6 15.8 172 5-215 46-244 (567)
199 2l6j_A TPR repeat-containing p 98.2 2.2E-06 7.7E-11 57.6 5.3 95 243-339 3-103 (111)
200 1klx_A Cysteine rich protein B 98.2 3.9E-05 1.3E-09 53.9 11.5 112 211-345 9-128 (138)
201 1klx_A Cysteine rich protein B 98.1 0.00013 4.4E-09 51.2 13.8 111 2-130 9-127 (138)
202 1dce_A Protein (RAB geranylger 98.1 0.00044 1.5E-08 61.0 19.6 171 145-332 47-244 (567)
203 1na3_A Designed protein CTPR2; 98.1 3.2E-05 1.1E-09 49.6 9.5 83 23-113 8-90 (91)
204 3ma5_A Tetratricopeptide repea 98.1 2.2E-05 7.4E-10 51.7 8.2 69 20-89 3-71 (100)
205 2kat_A Uncharacterized protein 98.1 3E-05 1E-09 52.5 8.9 78 263-342 4-81 (115)
206 2l6j_A TPR repeat-containing p 98.0 1.8E-05 6.3E-10 53.0 7.5 89 23-120 3-98 (111)
207 1na3_A Designed protein CTPR2; 98.0 6.7E-05 2.3E-09 48.0 9.7 79 245-325 10-88 (91)
208 3ma5_A Tetratricopeptide repea 97.9 6.5E-05 2.2E-09 49.4 7.4 65 243-308 6-70 (100)
209 3qww_A SET and MYND domain-con 97.6 0.00029 9.9E-09 59.7 9.3 94 209-307 310-410 (433)
210 3qwp_A SET and MYND domain-con 97.6 0.00076 2.6E-08 57.2 11.8 99 169-272 294-399 (429)
211 3qww_A SET and MYND domain-con 97.6 0.00035 1.2E-08 59.2 9.4 94 174-272 310-410 (433)
212 3ly7_A Transcriptional activat 97.6 0.0034 1.2E-07 51.3 14.5 74 276-353 274-347 (372)
213 1pc2_A Mitochondria fission pr 97.5 0.0012 4.2E-08 46.2 9.8 92 260-355 14-110 (152)
214 3qwp_A SET and MYND domain-con 97.5 0.00091 3.1E-08 56.7 10.6 105 66-190 294-399 (429)
215 2kc7_A BFR218_protein; tetratr 97.4 0.00028 9.6E-09 46.0 5.1 59 30-89 6-65 (99)
216 2kc7_A BFR218_protein; tetratr 97.4 0.00053 1.8E-08 44.6 6.5 59 250-309 6-65 (99)
217 3ly7_A Transcriptional activat 97.4 0.0024 8.1E-08 52.2 11.3 138 20-166 190-347 (372)
218 3bee_A Putative YFRE protein; 97.3 0.0024 8.2E-08 41.0 8.6 66 242-308 4-72 (93)
219 3bee_A Putative YFRE protein; 97.2 0.0035 1.2E-07 40.2 9.1 69 20-89 2-73 (93)
220 3u64_A Protein TP_0956; tetrat 96.9 0.0092 3.2E-07 46.8 10.2 104 40-153 179-295 (301)
221 3mkq_A Coatomer beta'-subunit; 96.9 0.046 1.6E-06 50.7 16.6 47 69-127 662-708 (814)
222 3mkq_A Coatomer beta'-subunit; 96.9 0.022 7.5E-07 52.8 14.3 76 104-189 633-708 (814)
223 2v5f_A Prolyl 4-hydroxylase su 96.9 0.013 4.4E-07 38.5 9.3 66 243-308 4-75 (104)
224 1pc2_A Mitochondria fission pr 96.8 0.019 6.3E-07 40.3 10.0 83 3-88 13-100 (152)
225 4h7y_A Dual specificity protei 96.8 0.023 7.9E-07 39.4 10.1 107 20-134 9-128 (161)
226 3mkq_B Coatomer subunit alpha; 96.8 0.047 1.6E-06 39.3 12.0 96 2-125 19-114 (177)
227 2v5f_A Prolyl 4-hydroxylase su 96.7 0.014 4.7E-07 38.3 8.7 66 23-88 4-75 (104)
228 3u64_A Protein TP_0956; tetrat 96.7 0.031 1E-06 43.9 11.7 85 3-89 178-270 (301)
229 1nzn_A CGI-135 protein, fissio 96.7 0.033 1.1E-06 37.5 10.4 88 258-349 15-107 (126)
230 3mkq_B Coatomer subunit alpha; 96.5 0.092 3.1E-06 37.8 12.1 110 161-306 33-142 (177)
231 3lvg_A Clathrin heavy chain 1; 96.5 9.6E-06 3.3E-10 67.6 -9.5 257 23-334 53-324 (624)
232 1wy6_A Hypothetical protein ST 96.5 0.1 3.5E-06 35.4 14.4 65 245-310 92-156 (172)
233 4h7y_A Dual specificity protei 96.4 0.043 1.5E-06 38.0 9.5 113 242-357 11-136 (161)
234 1v54_E Cytochrome C oxidase po 95.8 0.19 6.6E-06 32.0 9.4 50 294-343 25-74 (109)
235 2ff4_A Probable regulatory pro 95.3 0.11 3.7E-06 43.4 9.5 70 246-316 173-247 (388)
236 1nzn_A CGI-135 protein, fissio 95.2 0.29 9.8E-06 33.0 9.4 85 37-129 14-103 (126)
237 2y69_E Cytochrome C oxidase su 94.9 0.44 1.5E-05 32.2 9.4 69 289-358 62-131 (152)
238 4gns_B Protein CSD3, chitin bi 94.8 0.59 2E-05 42.5 13.0 134 166-306 252-398 (754)
239 2ff4_A Probable regulatory pro 94.7 0.17 5.9E-06 42.2 9.1 73 281-354 173-250 (388)
240 4ady_A RPN2, 26S proteasome re 94.6 3 0.0001 39.0 21.2 218 105-342 416-657 (963)
241 4gns_B Protein CSD3, chitin bi 94.4 0.96 3.3E-05 41.1 13.6 126 201-341 252-398 (754)
242 3lvg_A Clathrin heavy chain 1; 94.2 0.00097 3.3E-08 56.0 -5.5 240 19-299 78-324 (624)
243 1wy6_A Hypothetical protein ST 93.7 1.1 3.7E-05 30.6 14.1 68 278-346 90-157 (172)
244 1v54_E Cytochrome C oxidase po 93.5 0.89 3E-05 29.0 8.3 63 39-108 25-87 (109)
245 3o48_A Mitochondria fission 1 92.9 1.5 5E-05 29.8 10.7 73 276-350 37-112 (134)
246 4b4t_P 26S proteasome regulato 92.4 4.6 0.00016 34.4 23.2 123 2-128 30-165 (445)
247 4fhn_B Nucleoporin NUP120; pro 92.2 7 0.00024 38.0 16.5 143 64-224 817-965 (1139)
248 4b4t_P 26S proteasome regulato 91.5 5.9 0.0002 33.7 20.7 260 73-341 30-322 (445)
249 3o48_A Mitochondria fission 1 91.5 1.7 5.8E-05 29.5 8.1 70 18-88 35-107 (134)
250 4fhn_B Nucleoporin NUP120; pro 91.1 7.6 0.00026 37.7 15.4 118 243-362 841-984 (1139)
251 3ffl_A Anaphase-promoting comp 91.0 2.5 8.7E-05 30.0 9.0 103 24-126 20-148 (167)
252 2y69_E Cytochrome C oxidase su 90.9 2.6 9.1E-05 28.6 8.8 63 39-108 68-130 (152)
253 1zbp_A Hypothetical protein VP 90.7 4.8 0.00016 31.2 13.3 114 1-129 10-129 (273)
254 1y8m_A FIS1; mitochondria, unk 90.7 2.9 0.0001 28.7 12.4 72 276-349 36-110 (144)
255 2wpv_A GET4, UPF0363 protein Y 90.5 5.7 0.0002 31.7 16.0 156 164-342 35-216 (312)
256 3ffl_A Anaphase-promoting comp 90.2 3.7 0.00013 29.1 10.2 65 162-226 20-92 (167)
257 4ady_A RPN2, 26S proteasome re 90.0 13 0.00044 35.0 22.7 257 34-307 384-657 (963)
258 4b4t_R RPN7, 26S proteasome re 89.5 5 0.00017 33.9 11.5 98 246-343 133-237 (429)
259 4b4t_R RPN7, 26S proteasome re 88.2 6.4 0.00022 33.3 11.2 64 61-128 133-196 (429)
260 1zbp_A Hypothetical protein VP 87.1 9.1 0.00031 29.7 11.5 56 67-129 5-60 (273)
261 2p58_C Putative type III secre 86.0 4.1 0.00014 26.0 6.4 76 3-89 22-99 (116)
262 4a1g_A Mitotic checkpoint seri 84.6 3.8 0.00013 28.7 6.5 49 41-89 82-131 (152)
263 3txn_A 26S proteasome regulato 84.5 16 0.00056 30.3 15.5 171 164-342 21-209 (394)
264 2uwj_G Type III export protein 84.3 3.9 0.00013 26.0 5.7 76 3-89 21-98 (115)
265 3esl_A Checkpoint serine/threo 84.3 4.9 0.00017 29.6 7.3 53 37-89 92-145 (202)
266 2wvi_A Mitotic checkpoint seri 83.8 4.6 0.00016 28.7 6.8 49 41-89 77-126 (164)
267 3lpz_A GET4 (YOR164C homolog); 81.6 19 0.00066 29.0 18.9 25 163-187 36-60 (336)
268 1y8m_A FIS1; mitochondria, unk 78.4 14 0.00048 25.5 12.3 69 159-227 36-107 (144)
269 4aez_C MAD3, mitotic spindle c 78.3 7.2 0.00025 29.3 6.5 49 41-89 131-180 (223)
270 3esl_A Checkpoint serine/threo 77.7 19 0.00064 26.6 9.6 57 257-313 92-149 (202)
271 2uwj_G Type III export protein 72.5 16 0.00054 23.3 8.1 88 257-353 19-106 (115)
272 2p58_C Putative type III secre 71.7 17 0.00058 23.2 8.8 88 257-353 20-107 (116)
273 1qsa_A Protein (soluble lytic 71.2 57 0.002 29.1 25.9 151 176-342 228-409 (618)
274 1qsa_A Protein (soluble lytic 70.4 59 0.002 29.0 25.8 84 256-342 264-347 (618)
275 3bu8_A Telomeric repeat-bindin 66.3 34 0.0012 25.4 7.4 50 4-53 88-143 (235)
276 3lpz_A GET4 (YOR164C homolog); 65.9 52 0.0018 26.6 23.8 144 173-342 66-215 (336)
277 2d2s_A Exocyst complex compone 63.9 46 0.0016 25.3 9.2 90 250-342 24-119 (235)
278 1wdy_A 2-5A-dependent ribonucl 63.8 47 0.0016 25.4 10.3 50 254-303 189-240 (285)
279 2b7e_A PRE-mRNA processing pro 62.8 9.9 0.00034 21.4 3.2 29 41-69 3-31 (59)
280 2fu4_A Ferric uptake regulatio 62.2 23 0.00079 21.3 7.3 34 329-362 32-65 (83)
281 3jxi_A Vanilloid receptor-rela 59.8 37 0.0013 25.8 7.5 63 66-128 9-74 (260)
282 4a1g_A Mitotic checkpoint seri 59.6 42 0.0014 23.4 9.4 50 263-312 84-134 (152)
283 2f6m_A Suppressor protein STP2 58.7 14 0.00048 21.3 3.5 46 26-72 4-49 (65)
284 2fe3_A Peroxide operon regulat 57.6 43 0.0015 23.0 7.3 59 270-329 13-71 (145)
285 1wdy_A 2-5A-dependent ribonucl 57.3 62 0.0021 24.7 13.3 18 169-186 152-169 (285)
286 2wpv_A GET4, UPF0363 protein Y 56.7 74 0.0025 25.4 23.3 117 172-299 63-188 (312)
287 3eyy_A Putative iron uptake re 56.6 41 0.0014 23.2 6.4 35 295-329 33-67 (145)
288 1mzb_A Ferric uptake regulatio 56.1 44 0.0015 22.6 7.2 35 294-328 33-67 (136)
289 2w57_A Ferric uptake regulatio 55.3 49 0.0017 22.9 7.4 35 294-328 32-66 (150)
290 3mwm_A ZUR, putative metal upt 55.1 26 0.00089 23.9 5.2 46 284-329 18-63 (139)
291 4ets_A Ferric uptake regulatio 54.7 37 0.0013 24.0 6.0 70 4-75 13-85 (162)
292 2o03_A Probable zinc uptake re 53.6 30 0.001 23.3 5.2 45 285-329 16-60 (131)
293 2fe3_A Peroxide operon regulat 52.9 53 0.0018 22.6 7.4 62 232-294 10-71 (145)
294 1k1a_A B-cell lymphoma 3-encod 52.0 70 0.0024 23.7 10.2 87 31-125 13-101 (241)
295 2wvi_A Mitotic checkpoint seri 51.8 61 0.0021 23.0 9.2 54 262-315 78-132 (164)
296 3jxi_A Vanilloid receptor-rela 51.4 65 0.0022 24.4 7.7 49 2-51 16-73 (260)
297 2xig_A Ferric uptake regulatio 51.1 58 0.002 22.5 8.1 42 287-328 34-75 (150)
298 1ug3_A EIF4GI, eukaryotic prot 50.6 99 0.0034 25.0 9.7 25 103-127 14-38 (339)
299 4ets_A Ferric uptake regulatio 49.0 51 0.0017 23.2 6.0 59 271-330 25-85 (162)
300 2xig_A Ferric uptake regulatio 49.0 63 0.0022 22.3 7.0 62 12-75 16-77 (150)
301 3ltm_A Alpha-REP4; protein eng 48.5 76 0.0026 23.1 17.7 59 160-223 124-182 (211)
302 2ijq_A Hypothetical protein; s 47.9 70 0.0024 22.6 8.4 60 282-342 36-103 (161)
303 1wgl_A TOLL-interacting protei 47.9 36 0.0012 19.2 4.1 24 35-58 34-57 (59)
304 1mzb_A Ferric uptake regulatio 47.3 63 0.0022 21.8 6.4 62 153-215 9-71 (136)
305 3eu9_A Huntingtin-interacting 45.8 87 0.003 23.0 9.7 45 34-82 16-62 (240)
306 3bu8_A Telomeric repeat-bindin 45.4 93 0.0032 23.2 8.3 49 260-308 88-143 (235)
307 3eu9_A Huntingtin-interacting 43.9 94 0.0032 22.8 10.3 109 9-134 23-136 (240)
308 2w57_A Ferric uptake regulatio 43.3 65 0.0022 22.3 5.8 63 12-76 6-69 (150)
309 3eyy_A Putative iron uptake re 43.3 51 0.0017 22.7 5.2 61 12-75 8-68 (145)
310 1q2z_A ATP-dependent DNA helic 43.2 12 0.00042 24.9 1.9 31 39-69 42-73 (120)
311 2ion_A PDCD4, programmed cell 42.8 83 0.0028 21.9 9.9 70 246-316 11-82 (152)
312 3txn_A 26S proteasome regulato 42.6 1.5E+02 0.005 24.7 22.4 242 24-306 19-282 (394)
313 3l6a_A Eukaryotic translation 42.5 1.4E+02 0.0047 24.5 8.3 25 165-189 15-39 (364)
314 2qq8_A TBC1 domain family memb 42.4 47 0.0016 26.8 5.6 41 152-192 218-258 (334)
315 2ion_A PDCD4, programmed cell 41.8 86 0.0029 21.8 7.1 68 281-349 11-80 (152)
316 1bd8_A P19INK4D CDK4/6 inhibit 41.3 80 0.0027 21.3 7.1 19 31-49 6-24 (156)
317 2yru_A Steroid receptor RNA ac 41.0 76 0.0026 21.0 9.0 45 229-273 46-90 (118)
318 2ijq_A Hypothetical protein; s 38.6 1E+02 0.0035 21.7 7.0 62 26-88 35-104 (161)
319 2o03_A Probable zinc uptake re 38.5 52 0.0018 22.1 4.6 50 166-215 14-63 (131)
320 3mwm_A ZUR, putative metal upt 38.1 47 0.0016 22.6 4.3 51 165-215 16-66 (139)
321 4g8k_A 2-5A-dependent ribonucl 37.8 1.5E+02 0.0052 23.5 13.6 84 251-349 243-329 (337)
322 3bqo_A Telomeric repeat-bindin 37.4 65 0.0022 23.6 4.9 19 33-51 126-144 (211)
323 1oai_A Nuclear RNA export fact 37.0 30 0.001 19.5 2.6 19 3-21 35-53 (59)
324 2nsz_A Programmed cell death p 36.4 96 0.0033 20.8 11.2 71 247-318 10-82 (129)
325 1rw2_A ATP-dependent DNA helic 36.2 16 0.00054 25.5 1.6 31 39-69 73-104 (152)
326 4gq2_M Nucleoporin NUP120; bet 35.5 3E+02 0.01 26.2 11.5 48 314-361 897-948 (950)
327 2f6m_A Suppressor protein STP2 35.3 66 0.0022 18.6 4.2 44 247-291 5-48 (65)
328 2fu4_A Ferric uptake regulatio 35.3 72 0.0024 19.0 5.9 14 260-273 33-46 (83)
329 2qfz_A TBC1 domain family memb 34.9 1.8E+02 0.0061 23.5 8.2 58 218-275 218-275 (345)
330 2qq8_A TBC1 domain family memb 34.5 1.8E+02 0.0062 23.4 8.7 58 217-274 201-258 (334)
331 4b4t_O 26S proteasome regulato 34.5 2E+02 0.0068 23.9 9.4 55 169-223 83-153 (393)
332 3c1d_A Protein ORAA, regulator 34.5 1.2E+02 0.004 21.2 11.5 49 261-311 47-95 (159)
333 3ygs_P Procaspase 9; apoptosis 34.2 81 0.0028 19.8 4.6 66 9-81 25-90 (97)
334 2yru_A Steroid receptor RNA ac 34.0 1E+02 0.0035 20.4 6.6 18 207-224 71-88 (118)
335 3hra_A Ankyrin repeat family p 33.3 1.3E+02 0.0044 21.4 9.3 33 165-197 141-173 (201)
336 2nsz_A Programmed cell death p 33.1 1.1E+02 0.0038 20.5 8.3 68 281-349 9-78 (129)
337 2p22_A Suppressor protein STP2 32.5 51 0.0018 23.6 3.7 50 23-73 110-159 (174)
338 2ko4_A Mediator of RNA polymer 32.4 84 0.0029 18.9 4.0 33 54-86 31-63 (81)
339 3ltm_A Alpha-REP4; protein eng 32.3 1.4E+02 0.0049 21.5 18.3 167 160-358 31-197 (211)
340 1n11_A Ankyrin; clathrin, BAND 32.2 2.2E+02 0.0074 23.6 12.7 38 9-47 28-67 (437)
341 4b4t_S RPN3, 26S proteasome re 31.9 2.6E+02 0.0088 24.4 16.0 62 24-88 231-299 (523)
342 4aez_C MAD3, mitotic spindle c 31.6 1.6E+02 0.0056 22.1 8.7 53 296-348 131-184 (223)
343 2d2s_A Exocyst complex compone 31.1 1.7E+02 0.0059 22.1 12.5 137 106-270 24-160 (235)
344 3kea_A K1L; tropism, ANK repea 30.4 1.9E+02 0.0064 22.3 11.4 14 255-268 169-182 (285)
345 2keb_A DNA polymerase subunit 30.4 1.1E+02 0.0036 19.5 6.0 55 7-64 28-87 (101)
346 3b7b_A Euchromatic histone-lys 30.1 1.6E+02 0.0056 21.6 9.3 17 207-223 217-233 (237)
347 3qil_A Clathrin heavy chain 1; 29.5 78 0.0027 21.0 3.9 53 246-301 34-86 (125)
348 1ixm_A SPO0B, protein (sporula 29.5 97 0.0033 22.6 5.0 71 259-340 14-84 (192)
349 1ug3_A EIF4GI, eukaryotic prot 28.6 1.3E+02 0.0044 24.3 6.1 25 247-271 14-38 (339)
350 1bpo_A Protein (clathrin); cla 28.4 2.8E+02 0.0096 23.8 9.6 113 175-304 342-454 (494)
351 3ltj_A Alpharep-4; protein eng 28.1 1.6E+02 0.0056 21.0 18.6 168 160-359 26-193 (201)
352 2crb_A Nuclear receptor bindin 27.4 1.2E+02 0.004 19.0 4.3 27 25-51 16-42 (97)
353 1oyz_A Hypothetical protein YI 27.1 2.1E+02 0.0072 21.8 21.6 16 23-38 36-51 (280)
354 2p22_A Suppressor protein STP2 26.3 90 0.0031 22.3 4.1 50 242-292 109-158 (174)
355 2r9g_A AAA ATPase, central reg 26.3 2E+02 0.0067 21.2 10.8 56 255-311 25-85 (204)
356 3mv2_A Coatomer subunit alpha; 25.8 2.6E+02 0.0089 22.5 11.6 50 260-309 186-237 (325)
357 3e3v_A Regulatory protein RECX 24.5 2E+02 0.0067 20.6 10.0 33 179-211 50-82 (177)
358 3ltj_A Alpharep-4; protein eng 24.4 1.9E+02 0.0067 20.5 18.7 151 23-223 27-177 (201)
359 3qil_A Clathrin heavy chain 1; 24.1 75 0.0026 21.1 3.1 54 163-219 33-86 (125)
360 3f3f_C Nucleoporin NUP85; stru 23.6 3.1E+02 0.011 24.1 7.6 92 22-121 477-570 (570)
361 3us6_A Histidine-containing ph 23.5 1.9E+02 0.0065 20.1 6.6 48 259-307 70-121 (153)
362 2cos_A Serine/threonine protei 23.4 1E+02 0.0035 16.9 4.1 38 8-51 10-49 (54)
363 1uzc_A Hypothetical protein FL 23.3 1.1E+02 0.0038 18.0 3.5 33 39-72 13-46 (71)
364 3kea_A K1L; tropism, ANK repea 23.2 2.6E+02 0.0088 21.5 11.2 47 168-218 132-179 (285)
365 3lxu_X Tripeptidyl-peptidase 2 22.9 5.2E+02 0.018 25.9 9.6 79 260-341 1265-1343(1354)
366 1d1d_A Protein (capsid protein 22.6 1.9E+02 0.0065 22.4 5.5 56 18-75 32-88 (262)
367 1ya0_A SMG-7 transcript varian 22.5 3.8E+02 0.013 23.2 10.3 46 257-303 165-210 (497)
368 3ctd_A Putative ATPase, AAA fa 22.2 2.5E+02 0.0084 20.9 10.0 62 250-311 38-107 (213)
369 2dod_A Transcription elongatio 22.0 1.3E+02 0.0046 18.2 3.8 33 40-73 16-49 (82)
370 3lxu_X Tripeptidyl-peptidase 2 21.9 6.1E+02 0.021 25.4 10.5 35 256-292 1296-1330(1354)
371 4f52_E Glomulin; cullin-ring E 21.6 3.6E+02 0.012 24.0 7.9 23 245-267 86-108 (596)
372 2zrr_A Mundticin KS immunity p 21.1 1.1E+02 0.0036 20.1 3.3 17 291-307 30-46 (118)
373 1wxp_A THO complex subunit 1; 20.5 91 0.0031 20.2 3.0 45 38-84 55-99 (110)
374 3t5v_B Nuclear mRNA export pro 20.4 2.2E+02 0.0075 24.3 6.0 63 26-88 178-249 (455)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.4e-35 Score=253.01 Aligned_cols=202 Identities=15% Similarity=0.155 Sum_probs=177.4
Q ss_pred HHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC---------hhHHH
Q 044256 148 RLLELMMQRGLNPV-IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFN---------VEEAM 217 (363)
Q Consensus 148 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~ 217 (363)
.+.+.+.+.+..+. ...++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. .++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 33344444444333 346888999999999999999999999999999999999999999998765 45564
Q ss_pred HHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHH
Q 044256 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI 297 (363)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 297 (363)
.+|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 91 ------------~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 91 ------------DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADK 158 (501)
T ss_dssp ------------HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ------------HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHH
Confidence 55666677789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 298 ASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 159 A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 159 AYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999998875
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-32 Score=244.01 Aligned_cols=352 Identities=10% Similarity=-0.035 Sum_probs=273.7
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|..+|+.+... .| +..++..++.+|.+.|++++|..+|+++... +++..+++.++.+|.+.|++++|.+
T Consensus 97 ~g~~~~A~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 171 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLDI--TG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALN 171 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--HC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCchHHHHHHHHHHhh--CC-CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHH
Confidence 47899999999999965 77 8889999999999999999999999998654 6888999999999999999999999
Q ss_pred HHHHHHhcc---------CCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch----------------
Q 044256 81 LHQEMVNGM---------GDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT---------------- 135 (363)
Q Consensus 81 ~~~~~~~~~---------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------- 135 (363)
+|+++.... .......+++..+|+.++.+|.+.|++++|.++|+++.+.++....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp HHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHH
T ss_pred HHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhH
Confidence 999532211 0001113456899999999999999999999999999886543211
Q ss_pred -----------------------------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 044256 136 -----------------------------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186 (363)
Q Consensus 136 -----------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 186 (363)
.+.+.|++++|.++|+.+.+. +++..+++.++..|.+.|++++|..+|+
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITT 329 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 233567777777777777655 4677777788888888888888888887
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH----------------------HHHHHHhHhcCCCCCh
Q 044256 187 SMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF----------------------KKIFNEMKLCNVVPET 244 (363)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~ 244 (363)
++.+.+ +.+..++..++.++.+.|++++|..+++++..... ..+++.+.+.. +.+.
T Consensus 330 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 407 (597)
T 2xpi_A 330 KILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFG 407 (597)
T ss_dssp HHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCH
Confidence 777654 22455566666666666666666666665543221 23333333321 2356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (363)
.+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 789999999999999999999999998775 6678899999999999999999999999998764 45788999999999
Q ss_pred HccCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHhhcC
Q 044256 325 GKEGQIKKENYLLLSMEEN----GCALD--VDTFNTLMISFLQKE 363 (363)
Q Consensus 325 ~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~~ 363 (363)
.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 9999999999999999876 66888 789999999888765
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-32 Score=243.05 Aligned_cols=343 Identities=10% Similarity=-0.048 Sum_probs=251.3
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------CCCCCcccHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF---------------GCRPNVTTCDTL 65 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~l 65 (363)
.|++++|..+|+.+... .+ ++.+++.++.+|.+.|++++|+++|+++... +.+++..+|+.+
T Consensus 130 ~g~~~~A~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 130 TGDYARAKCLLTKEDLY--NR-SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR 206 (597)
T ss_dssp TTCHHHHHHHHHHTCGG--GT-CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcc--cc-chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHH
Confidence 36788888888887653 44 7888888888888888888888888853211 122346788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCC----------------------------------------------------
Q 044256 66 ITGLRRTGNMNLTLKLHQEMVNGMGDFG---------------------------------------------------- 93 (363)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------------------------------------------- 93 (363)
+.+|.+.|++++|.+.|+++.+.+....
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 8888888888888888888876542200
Q ss_pred ----------C--ccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHH
Q 044256 94 ----------G--IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMM 154 (363)
Q Consensus 94 ----------~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~ 154 (363)
. ..+++..+|+.++.+|.+.|++++|..+|+++.+.++.... .+...|++++|..+++.+.
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 0 01377888999999999999999999999999876543222 5678888889999888888
Q ss_pred HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHH
Q 044256 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234 (363)
Q Consensus 155 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (363)
+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++...+
T Consensus 367 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------- 437 (597)
T 2xpi_A 367 DRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------- 437 (597)
T ss_dssp HHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------
T ss_pred hhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 654 5567788888899999999999999998887753 3357788888889999999999988888876554
Q ss_pred hHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CC
Q 044256 235 MKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK----NL 310 (363)
Q Consensus 235 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~ 310 (363)
+.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +.
T Consensus 438 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 438 ------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp ------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred ------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 2356667777777777777777777777776654 456667777777777777777777777776654 44
Q ss_pred Ccc--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 044256 311 VAD--VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363 (363)
Q Consensus 311 ~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 363 (363)
.|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK 564 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 555 6677777777777777777777777776643 335666777766666543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.5e-33 Score=243.51 Aligned_cols=207 Identities=12% Similarity=0.148 Sum_probs=175.0
Q ss_pred hHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC---------hh
Q 044256 6 GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN---------MN 76 (363)
Q Consensus 6 ~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 76 (363)
.+..+++.+.+.+..+.....++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. .+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345566677777766623446899999999999999999999999999999999999999999987764 57
Q ss_pred HHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHc
Q 044256 77 LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQR 156 (363)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 156 (363)
.|.++|++|.+.| +.||..+|++||.+|++.|++++|.++|++|.+.
T Consensus 88 ~A~~lf~~M~~~G------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--------------------------- 134 (501)
T 4g26_A 88 RGFDIFKQMIVDK------VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF--------------------------- 134 (501)
T ss_dssp HHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---------------------------
T ss_pred HHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------------------
Confidence 8999999999999 8999999999999999999999999999999864
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhH
Q 044256 157 GLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236 (363)
Q Consensus 157 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (363)
|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.+++++ |.
T Consensus 135 g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~------------Mr 202 (501)
T 4g26_A 135 GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQR------------LR 202 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH------------HH
T ss_pred CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHH------------HH
Confidence 557889999999999999999999999999999999999999999999999999999999755554 55
Q ss_pred hcCCCCChHHHHHHHHHHHhc
Q 044256 237 LCNVVPETFTCNIFIDGLCKN 257 (363)
Q Consensus 237 ~~~~~~~~~~~~~ll~~~~~~ 257 (363)
+.+..|+..||+.++..|+..
T Consensus 203 ~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 203 DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTSSBCHHHHHHHHHHHHSH
T ss_pred HhCCCcCHHHHHHHHHHHhcC
Confidence 567899999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.4e-28 Score=208.88 Aligned_cols=341 Identities=12% Similarity=0.023 Sum_probs=215.3
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|++++|.+.++.+.+. .|.++..+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++|...
T Consensus 13 g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 6777777777777765 56566667777777777777777777777766653 44556677777777777777777777
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHH
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMM 154 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~ 154 (363)
|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+..+.... .+...|++++|...++++.
T Consensus 90 ~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 90 YRHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHcC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 77777643 334556777777777777777777777777665433222 4455677777777777766
Q ss_pred HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhH------
Q 044256 155 QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGF------ 228 (363)
Q Consensus 155 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------ 228 (363)
+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++.....+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 653 3345566666666777777777777776666542 22344555555555555666666555555443321
Q ss_pred ----------------HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhc
Q 044256 229 ----------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292 (363)
Q Consensus 229 ----------------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 292 (363)
...++.+.... +.+..++..+..++.+.|++++|...|+++.+.. +.+..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence 11111111111 2234566677777777777777777777776654 55666777777777777
Q ss_pred CChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 044256 293 GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD-VDTFNTLMISF 359 (363)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 359 (363)
|++++|...++++.+.. +.+..++..+..++.+.|++++|...|+++.+ +.|+ ...+..+-..+
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHH
Confidence 77777777777776653 44566777777777777777777777777776 3443 44444444443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=8.3e-28 Score=204.06 Aligned_cols=299 Identities=12% Similarity=0.019 Sum_probs=188.7
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLH 82 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 82 (363)
++++|+..|+.+.+. .|.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|
T Consensus 82 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 344444444444443 33333444444444444444444444444444331 111223333444444444555555555
Q ss_pred HHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHHH
Q 044256 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMMQ 155 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~ 155 (363)
+++.+.. +.+..+|..+...+.+.|++++|...|+++.+..+.... .+...|++++|...+.+...
T Consensus 159 ~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 159 LKAIETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5444432 233445555555555555555555555555554322111 34456666666666666655
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHh
Q 044256 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235 (363)
Q Consensus 156 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (363)
.. +.+..++..+...+.+.|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|...++++.+..
T Consensus 232 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------- 301 (388)
T 1w3b_A 232 LS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-------- 301 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------
T ss_pred hC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------
Confidence 43 2345667777777777778888887777777653 2245667777777777788888877777766543
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHH
Q 044256 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315 (363)
Q Consensus 236 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (363)
+.+..++..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..
T Consensus 302 -----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~ 374 (388)
T 1w3b_A 302 -----PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFAD 374 (388)
T ss_dssp -----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHH
T ss_pred -----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH
Confidence 4577889999999999999999999999998764 6678899999999999999999999999999864 44677
Q ss_pred HHHHHHHHHHccC
Q 044256 316 AYNILIHALGKEG 328 (363)
Q Consensus 316 ~~~~li~~~~~~g 328 (363)
.|..+...+...|
T Consensus 375 a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 375 AYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHcc
Confidence 8888777776655
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=3.4e-25 Score=191.71 Aligned_cols=318 Identities=11% Similarity=-0.013 Sum_probs=260.8
Q ss_pred hhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 044256 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84 (363)
Q Consensus 5 ~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 84 (363)
..+...|..+... .|.++..|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|++
T Consensus 9 ~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQ--SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccc--cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445556666655 67688999999999999999999999999998864 45678899999999999999999999999
Q ss_pred HHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---h-------------------hhhccCC
Q 044256 85 MVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN---T-------------------LLCKKTK 142 (363)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~-------------------~~~~~~~ 142 (363)
+.+.. +.+..++..+..++.+.|++++|...|+++.+..+... . .+...|+
T Consensus 86 al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 86 VIQLK-------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99865 55688999999999999999999999999998655433 2 2778999
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 044256 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222 (363)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (363)
+++|...++.+.+.. +.+..++..+..+|.+.|++++|..+|+.+.+.. +.+..++..+...|...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998874 4567889999999999999999999999998763 44788999999999999999999999988
Q ss_pred HHHhhHHHHHHHhHhcCCCCC-hHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhccCcch----HHHHHHH
Q 044256 223 MILNGFKKIFNEMKLCNVVPE-TFTCNIF------------IDGLCKNGHVLEVMELFPTLEISNCELF----VEIFNSL 285 (363)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l 285 (363)
+.... |+ ...+..+ ...+...|++++|...|+++.... +.+ ...+..+
T Consensus 237 ~~~~~--------------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 237 CLKLD--------------QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERI 301 (450)
T ss_dssp HHHHC--------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHH
T ss_pred HHHhC--------------CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHH
Confidence 87653 43 3334443 788999999999999999998764 222 4578889
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHH
Q 044256 286 IRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTF 352 (363)
Q Consensus 286 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 352 (363)
..++.+.|++++|...++++.... +.+...|..+..+|...|++++|...|+++.+ +.|+....
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 365 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQI 365 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHH
Confidence 999999999999999999998763 45789999999999999999999999999998 56664443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.3e-24 Score=186.49 Aligned_cols=312 Identities=9% Similarity=0.020 Sum_probs=257.7
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|+.+|+.+.+. .|.++.+|..+..++...|++++|+..|+++.+.+ +.+..++..+..++.+.|++++|..
T Consensus 39 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAED 115 (450)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 48899999999999986 66689999999999999999999999999999875 4467788999999999999999999
Q ss_pred HHHHHHhccCCCCCccCCch---hhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhh
Q 044256 81 LHQEMVNGMGDFGGIYKPNV---FCYGSL------------IDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLC 138 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~ 138 (363)
.|+.+.+.. +.+. ..+..+ ...+.+.|++++|...|+++.+....... .+.
T Consensus 116 ~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 116 DFKKVLKSN-------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcC-------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999854 3344 566655 44488999999999999999886543222 678
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHH------------HHH
Q 044256 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVL------------ING 206 (363)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~ 206 (363)
..|++++|...++.+.+.. +.+..++..+...|...|++++|...|+.+.... +.+...+..+ ...
T Consensus 189 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998764 4567899999999999999999999999998763 2234444444 788
Q ss_pred HHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHH
Q 044256 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE-----TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEI 281 (363)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 281 (363)
+...|++++|...++++.... |+ ...+..+..++.+.|++++|+..++++.... +.+..+
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~ 331 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTE--------------PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNA 331 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--------------CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--------------CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHH
Confidence 999999999999998887643 44 3478888999999999999999999998775 667899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHH------------HHHccC-----ChhHHHHHHHHH
Q 044256 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH------------ALGKEG-----QIKKENYLLLSM 340 (363)
Q Consensus 282 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~------------~~~~~g-----~~~~a~~~~~~m 340 (363)
|..+..+|...|++++|...++++.+.. +-+...+..+.. .|...| +.+++.+.|+++
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999999999863 335666666653 244444 567788888874
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.9e-23 Score=183.78 Aligned_cols=332 Identities=10% Similarity=-0.045 Sum_probs=221.8
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|+..|+.+.+. .| ++.+|..+..++.+.|++++|+..|+++.+.+ +.+..+|..+..++...|++++|..
T Consensus 19 ~g~~~~A~~~~~~al~~--~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALEL--KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp TSCHHHHHHHHHHHHHH--CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHhc--Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 48999999999999997 58 89999999999999999999999999999875 4456789999999999999999999
Q ss_pred HHHHHHhccCCCCCc-----------------------------------------------------------------
Q 044256 81 LHQEMVNGMGDFGGI----------------------------------------------------------------- 95 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 95 (363)
.|+.+....+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 999998765210000
Q ss_pred -------cCCchhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCCCc-------ch---------hhhccCChH
Q 044256 96 -------YKPNVFCYGSLIDGLCK---DRLVDQTKDLFMEMKD-----KGINA-------NT---------LLCKKTKLV 144 (363)
Q Consensus 96 -------~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~~~-------~~---------~~~~~~~~~ 144 (363)
.+.+...+......+.. .|++++|...|+++.+ ....| .. .+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 00112233333333333 7889999999998887 31121 11 566788899
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 044256 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224 (363)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (363)
+|...++.+.+.... ..++..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...++++.
T Consensus 255 ~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 255 GAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999998888876533 6777778888888888888888888877653 3356677777788888888888888887776
Q ss_pred HhhH----------------------HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcch----
Q 044256 225 LNGF----------------------KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF---- 278 (363)
Q Consensus 225 ~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 278 (363)
.... ...++...... +.+...+..+...+...|++++|...++++.... +.+
T Consensus 332 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 409 (514)
T 2gw1_A 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIY 409 (514)
T ss_dssp HTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCS
T ss_pred HhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHH
Confidence 5431 11222222211 1233455555555555566666666555554432 111
Q ss_pred --HHHHHHHHHHHHh---cCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 279 --VEIFNSLIRGCCK---FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 279 --~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
..++..+...+.. .|++++|...++++.... +.+..++..+..++.+.|++++|...|++..+
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2255555555555 566666666666555542 33455555555556666666666666666555
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=9e-22 Score=164.86 Aligned_cols=301 Identities=10% Similarity=-0.019 Sum_probs=241.6
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|+..|+.+.+. .|.++.+|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|..
T Consensus 16 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHH
Confidence 48999999999999987 67689999999999999999999999999999874 3366788999999999999999999
Q ss_pred HHHHHHhccCCCCCccC---CchhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHH
Q 044256 81 LHQEMVNGMGDFGGIYK---PNVFCYGSL------------IDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.|+.+.+.. + .+...+..+ ...+...|++++|...++++.+.
T Consensus 93 ~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------- 149 (359)
T 3ieg_A 93 DFKKVLKSN-------PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV---------------- 149 (359)
T ss_dssp HHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHhcC-------CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------
Confidence 999999853 3 345555555 35566666666666666666543
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044256 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225 (363)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (363)
. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++...
T Consensus 150 -----------~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 150 -----------C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp -----------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------C-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 3456788889999999999999999999998873 44778889999999999999999999988876
Q ss_pred hhHHHHHHHhHhcCCCCC-hHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhccCcchH----HHHHHHHHH
Q 044256 226 NGFKKIFNEMKLCNVVPE-TFTCN------------IFIDGLCKNGHVLEVMELFPTLEISNCELFV----EIFNSLIRG 288 (363)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~-~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~ 288 (363)
.. |+ ...+. .+...+...|++++|...++++.+.. +.+. ..+..+..+
T Consensus 217 ~~--------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 217 LD--------------QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHC 281 (359)
T ss_dssp HC--------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHH
T ss_pred hC--------------ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHH
Confidence 54 33 22222 23666889999999999999998764 3333 335567889
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 044256 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV-DTFNTLMIS 358 (363)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~ 358 (363)
+...|++++|...+++..+.. +.+...|..+..++...|++++|...|++..+ +.|+. ..+..+..+
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKA 349 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHH
Confidence 999999999999999999864 45788999999999999999999999999998 45664 444444443
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.2e-22 Score=177.07 Aligned_cols=302 Identities=8% Similarity=-0.101 Sum_probs=204.2
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----------------------
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV---------------------- 59 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---------------------- 59 (363)
|++++|+..|+.+.+. .|.+..+|..+..++.+.|++++|...|+++.+.+ +++.
T Consensus 53 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (514)
T 2gw1_A 53 GDLKKVVEMSTKALEL--KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEK 129 (514)
T ss_dssp TCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999987 67688999999999999999999999999998764 2221
Q ss_pred ---------------------------------------------------------ccHHHHHHHHHh---cCChhHHH
Q 044256 60 ---------------------------------------------------------TTCDTLITGLRR---TGNMNLTL 79 (363)
Q Consensus 60 ---------------------------------------------------------~~~~~l~~~~~~---~~~~~~a~ 79 (363)
..+..+...+.. .|++++|.
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp ---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred HHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 122222222333 79999999
Q ss_pred HHHHHHHh-----ccCCCCC--ccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch------hhhccCChHHH
Q 044256 80 KLHQEMVN-----GMGDFGG--IYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------LLCKKTKLVEA 146 (363)
Q Consensus 80 ~~~~~~~~-----~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~a 146 (363)
..|+++.+ .....+. ..+.+..++..+...+...|++++|...++++.+....+.. .+...|++++|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHH
Confidence 99999987 3100000 00334677888899999999999999999999887655211 34455556666
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 044256 147 NRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILN 226 (363)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (363)
...++.+.... +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++...
T Consensus 290 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 290 YNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp GGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66665555443 2234455555555555555555555555555442 113344444555555555555555555554432
Q ss_pred hH----------------------HHHHHHhHhcCC-CCC----hHHHHHHHHHHHh---cCCHHHHHHHHHHHHhccCc
Q 044256 227 GF----------------------KKIFNEMKLCNV-VPE----TFTCNIFIDGLCK---NGHVLEVMELFPTLEISNCE 276 (363)
Q Consensus 227 ~~----------------------~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~ 276 (363)
.. ...++.+..... .++ ...+..+..++.. .|++++|...++++.... +
T Consensus 368 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 446 (514)
T 2gw1_A 368 FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-P 446 (514)
T ss_dssp STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-T
T ss_pred cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-c
Confidence 21 112222211111 112 3388889999999 999999999999998875 6
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044256 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 277 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
.+..++..+...|...|++++|...|+++.+..
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 678889999999999999999999999999874
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.5e-21 Score=171.21 Aligned_cols=323 Identities=13% Similarity=0.021 Sum_probs=255.9
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|+..|+.+.+. .|.++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|..
T Consensus 38 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp TTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 47889999999999887 67688899999999999999999999999988875 4456778888888888888888887
Q ss_pred HHHHHHhccCCCCC------------------------------------------------------------------
Q 044256 81 LHQEMVNGMGDFGG------------------------------------------------------------------ 94 (363)
Q Consensus 81 ~~~~~~~~~~~~~~------------------------------------------------------------------ 94 (363)
.|+.+ ...+....
T Consensus 115 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (537)
T 3fp2_A 115 DLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY 193 (537)
T ss_dssp HHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred HHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence 77432 10000000
Q ss_pred ------------------------------------ccCCc--------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044256 95 ------------------------------------IYKPN--------VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130 (363)
Q Consensus 95 ------------------------------------~~~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 130 (363)
...|+ ..++..+...+...|++++|...+++..+..
T Consensus 194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~ 273 (537)
T 3fp2_A 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273 (537)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 01121 2245666677888999999999999999876
Q ss_pred CCcch------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 044256 131 INANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI 204 (363)
Q Consensus 131 ~~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 204 (363)
+.+.. .+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 351 (537)
T 3fp2_A 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLA 351 (537)
T ss_dssp CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 65332 6678999999999999998875 4467789999999999999999999999998874 33567888899
Q ss_pred HHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-----cchH
Q 044256 205 NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC-----ELFV 279 (363)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~ 279 (363)
..+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+... ....
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKF-------------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 99999999999999998887654 34567888999999999999999999999876531 1112
Q ss_pred HHHHHHHHHHHhc----------CChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 280 EIFNSLIRGCCKF----------GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 280 ~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
..+..+...+... |++++|...|+++.+.. +.+...+..+..++.+.|++++|...|++..+.
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2244455677777 99999999999999874 457889999999999999999999999999984
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=7.9e-21 Score=157.30 Aligned_cols=294 Identities=11% Similarity=-0.036 Sum_probs=238.8
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCch
Q 044256 21 PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNV 100 (363)
Q Consensus 21 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
|.++..+..+...+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 90 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------PSNP 90 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTST
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCH
Confidence 3377888889999999999999999999998774 4456677778888899999999999999998864 5567
Q ss_pred hhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 044256 101 FCYGSLIDGLCKDR-LVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172 (363)
Q Consensus 101 ~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (363)
..|..+...+...| ++++|...|++..+....... .+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 88899999999999 999999999999876543222 6678899999999999998875 33566777899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhc-CCCCChHHHHHHH
Q 044256 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC-NVVPETFTCNIFI 251 (363)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll 251 (363)
...|++++|...++...+.. +.+...+..+...+...|++++|...++++.... ...... ..+....++..+.
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI-----KAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTTSCSCTTTTCCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh-----hhccccccccHHHHHHHHHH
Confidence 99999999999999998874 4467889999999999999999999998876532 111110 1133457889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHH-HccCCh
Q 044256 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL-GKEGQI 330 (363)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~ 330 (363)
.++...|++++|...++++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+...+..+..++ ...|+.
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 99999999999999999998875 6678899999999999999999999999998874 45778888888877 456654
Q ss_pred h
Q 044256 331 K 331 (363)
Q Consensus 331 ~ 331 (363)
+
T Consensus 322 ~ 322 (330)
T 3hym_B 322 E 322 (330)
T ss_dssp -
T ss_pred h
Confidence 4
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=1.3e-21 Score=164.62 Aligned_cols=282 Identities=12% Similarity=-0.038 Sum_probs=201.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhH
Q 044256 24 DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCY 103 (363)
Q Consensus 24 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (363)
...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~ 135 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------PDNQTAL 135 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-------CCCHHHH
Confidence 3456667777777777777777777777653 3345566677777777777777777777777653 4456667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 044256 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183 (363)
Q Consensus 104 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 183 (363)
..+..++...|++++|...++++.+..+.........+..... ..+. ..+..+ ..+...|++++|..
T Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~-~~~~~~~~~~~A~~ 202 (368)
T 1fch_A 136 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG-----------AGLG-PSKRIL-GSLLSDSLFLEVKE 202 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------------------CTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhh-----------hccc-HHHHHH-HHHhhcccHHHHHH
Confidence 7777777777777777777777766533222111111000000 0000 011122 33338899999999
Q ss_pred HHHHHHHcCCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 044256 184 LFDSMARKGFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262 (363)
Q Consensus 184 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 262 (363)
.++++.+..... +..++..+...+.+.|++++|...++++.... +.+..++..+...+...|++++
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-------------PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------cCCHHHHHHHHHHHHHcCCHHH
Confidence 999998874221 47888999999999999999999998887653 2456789999999999999999
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCcc-----------HHHHHHHHHHHHccCChh
Q 044256 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD-----------VVAYNILIHALGKEGQIK 331 (363)
Q Consensus 263 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~ 331 (363)
|...++++.+.. +.+..++..+..+|.+.|++++|...|+++.... +.+ ..+|..+..++...|+++
T Consensus 270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 999999998875 6678899999999999999999999999988652 112 688999999999999999
Q ss_pred HHHHHHHHHH
Q 044256 332 KENYLLLSME 341 (363)
Q Consensus 332 ~a~~~~~~m~ 341 (363)
+|..++++.+
T Consensus 348 ~A~~~~~~~l 357 (368)
T 1fch_A 348 AYGAADARDL 357 (368)
T ss_dssp GHHHHHTTCH
T ss_pred hHHHhHHHHH
Confidence 9999877543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=3.7e-20 Score=153.29 Aligned_cols=271 Identities=10% Similarity=-0.075 Sum_probs=230.2
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-ChhHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG-NMNLTL 79 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~ 79 (363)
.|++++|.++|+.+.+. .|.+...+..++.++...|++++|..+++++.+.. +.+...|..+...+...| ++++|.
T Consensus 35 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~ 111 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHAR 111 (330)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHH
Confidence 48899999999999987 66678889999999999999999999999999874 446778899999999999 999999
Q ss_pred HHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-------hhhccCChHHHHHHHHH
Q 044256 80 KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-------LLCKKTKLVEANRLLEL 152 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~ 152 (363)
..|+.+.+.. +.+...|..+..++...|++++|...+++..+....... .+...|++++|...++.
T Consensus 112 ~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 112 RYLSKATTLE-------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHTTC-------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999864 556788999999999999999999999999987554332 67789999999999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCcHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 044256 153 MMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG--------FMPDVFSYSVLINGYCKNFNVEEAMNVSREMI 224 (363)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (363)
+.+.. +.+..++..+...+...|++++|...+++..+.. .+....++..+...+...|++++|...+++..
T Consensus 185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99875 4567889999999999999999999999887641 13345788899999999999999999998887
Q ss_pred HhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHH-HhcCChH
Q 044256 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC-CKFGIFE 296 (363)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~ 296 (363)
... +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+..++ ...|+.+
T Consensus 264 ~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 264 VLI-------------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHS-------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred hhC-------------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 654 3467788999999999999999999999998775 56778888888877 4555543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.9e-19 Score=149.57 Aligned_cols=302 Identities=11% Similarity=-0.017 Sum_probs=235.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-------MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCcchH
Confidence 67789999999999999999999999998874 4467788999999999999999999999999864 456788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-chhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINA-NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVA 181 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (363)
+..+..++...|++++|...|++..+..+.. +. ..+...+..+.. ...+..+...+...|++++|
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE--------KEAESQLVKADE------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH--------HHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh--------HHHHHHHHHHHH------HHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999999999998753310 10 011111111100 11233446788999999999
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHH
Q 044256 182 IALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261 (363)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 261 (363)
...++.+.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-------------SDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------------SCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHcCCHH
Confidence 99999998874 3467888999999999999999998888876543 346778899999999999999
Q ss_pred HHHHHHHHHHhccCcchHHHHH------------HHHHHHHhcCChHHHHHHHHHhhhCCCCccH----HHHHHHHHHHH
Q 044256 262 EVMELFPTLEISNCELFVEIFN------------SLIRGCCKFGIFEIASELFNKLSCKNLVADV----VAYNILIHALG 325 (363)
Q Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~ 325 (363)
+|...++++.+.. +.+...+. .+...+.+.|++++|...++++.... +.+. ..+..+..++.
T Consensus 206 ~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 206 LSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHH
Confidence 9999999998764 43444333 33667899999999999999998864 2233 33556778899
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 044256 326 KEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQKE 363 (363)
Q Consensus 326 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 363 (363)
..|++++|...+++..+. .+.+...+..+-..|.+.|
T Consensus 284 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcC
Confidence 999999999999999985 2336777777777766543
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=1.2e-20 Score=158.68 Aligned_cols=277 Identities=10% Similarity=-0.076 Sum_probs=215.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
+...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHH
Confidence 44558899999999999999999999998874 4567788999999999999999999999998864 556888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (363)
|..+..++...|++++|...|+++.+..+........ .......+..+...+...|++++|.
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------------~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN------------------KKGSPGLTRRMSKSPVDSSVLEGVK 197 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------------------CCHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhh------------------hccchHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999999999999999988742210000000 0011234555688899999999999
Q ss_pred HHHHHHHHcCCC-CcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHH
Q 044256 183 ALFDSMARKGFM-PDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVL 261 (363)
Q Consensus 183 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 261 (363)
.+++++.+.... ++..++..+...|...|++++|...+++++... +.+..++..+..+|...|+++
T Consensus 198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~~~~l~~~~~~~g~~~ 264 (365)
T 4eqf_A 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-------------PEDYSLWNRLGATLANGDRSE 264 (365)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHcCCHH
Confidence 999999887422 157889999999999999999999998887654 345778999999999999999
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-----------ccHHHHHHHHHHHHccCCh
Q 044256 262 EVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV-----------ADVVAYNILIHALGKEGQI 330 (363)
Q Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~ 330 (363)
+|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+.... .+...|..+..++...|+.
T Consensus 265 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 265 EAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 9999999998875 566889999999999999999999999998864210 1367899999999999999
Q ss_pred hHHHHHHHH
Q 044256 331 KKENYLLLS 339 (363)
Q Consensus 331 ~~a~~~~~~ 339 (363)
+.+..+.++
T Consensus 344 ~~a~~~~~~ 352 (365)
T 4eqf_A 344 ELFQAANLG 352 (365)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 998887665
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2.1e-19 Score=158.97 Aligned_cols=293 Identities=11% Similarity=-0.035 Sum_probs=191.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
.+..|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|++.|+++.+.. +.+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 95 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHH
Confidence 45778999999999999999999999999875 4577889999999999999999999999999865 567889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-----------------------------------------------
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT----------------------------------------------- 135 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------------------------- 135 (363)
+..+..++...|++++|...|+.+. ....+..
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 9999999999999999999886331 1110000
Q ss_pred ------------------------------------hhhccCChHHHHHHHHHHHHcCCCCc-------hhhHHHHHHHH
Q 044256 136 ------------------------------------LLCKKTKLVEANRLLELMMQRGLNPV-------IFTYTPLLNGY 172 (363)
Q Consensus 136 ------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~ 172 (363)
.....+++++|...++.+.+... .+ ..++..+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHH
Confidence 00011366677777777766531 11 22455556667
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHH
Q 044256 173 CLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252 (363)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 252 (363)
...|++++|...++.+.+. .|+...+..+...+...|++++|...++++.... +.+..++..+..
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~l~~ 318 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-------------PEYPPTYYHRGQ 318 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-------------TTCHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-------------CCCHHHHHHHHH
Confidence 7777778888887777765 3456667777777777777777777777776543 123444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhH
Q 044256 253 GLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332 (363)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 332 (363)
.+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 5555555555555555555443 3334455555555555555555555555555442 2334455555555555555555
Q ss_pred HHHHHHHHHH
Q 044256 333 ENYLLLSMEE 342 (363)
Q Consensus 333 a~~~~~~m~~ 342 (363)
|...|+++.+
T Consensus 397 A~~~~~~a~~ 406 (537)
T 3fp2_A 397 AIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=3.3e-20 Score=156.07 Aligned_cols=281 Identities=8% Similarity=-0.091 Sum_probs=215.1
Q ss_pred HHhcCCHHHHHH-HHHHHHhcCC-CC--CcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHH
Q 044256 34 FCMEGNIRDASQ-LVKKMATFGC-RP--NVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG 109 (363)
Q Consensus 34 ~~~~~~~~~a~~-~~~~m~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 109 (363)
+...|++++|+. .|++...... .| +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~ 107 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTT 107 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 445678889988 8886654421 11 35678889999999999999999999999864 5678889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 110 LCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189 (363)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 189 (363)
+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELK----------------------------PDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHhcC----------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999988652 3356788889999999999999999999998
Q ss_pred HcCCCCcHhHHHH---------------HHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHH
Q 044256 190 RKGFMPDVFSYSV---------------LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254 (363)
Q Consensus 190 ~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 254 (363)
..... +...+.. .+..+...|++++|...++++..... ..++..++..+...+
T Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-----------~~~~~~~~~~l~~~~ 227 (368)
T 1fch_A 160 RYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP-----------TSIDPDVQCGLGVLF 227 (368)
T ss_dssp HTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST-----------TSCCHHHHHHHHHHH
T ss_pred HhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCc-----------CcccHHHHHHHHHHH
Confidence 86422 2222221 23344488999999999888876540 011477889999999
Q ss_pred HhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHH
Q 044256 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKEN 334 (363)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 334 (363)
...|++++|...++++.... +.+..++..+...+...|++++|...++++.+.. +.+...+..+..++.+.|++++|.
T Consensus 228 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 305 (368)
T 1fch_A 228 NLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAV 305 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998875 6678899999999999999999999999998864 557889999999999999999999
Q ss_pred HHHHHHHHcCCC---C-------CHHHHHHHHHHHhhcC
Q 044256 335 YLLLSMEENGCA---L-------DVDTFNTLMISFLQKE 363 (363)
Q Consensus 335 ~~~~~m~~~g~~---p-------~~~~~~~ll~~~~~~~ 363 (363)
..|+++.+..-. | ...+|..+..+|.+.|
T Consensus 306 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 306 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 999999874211 1 1577888877776543
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=1.4e-19 Score=149.52 Aligned_cols=281 Identities=7% Similarity=-0.050 Sum_probs=221.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
+...|..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAV 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cCCHHH
Confidence 45667888999999999999999999998874 4467788889999999999999999999999864 567888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHH-HH-HHHhcCCHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPL-LN-GYCLVGKVNV 180 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~~~~~~ 180 (363)
+..+...+...|++++|...++++.+............ ....|+......+ .. .+...|++++
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVN---------------LQADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----------------------------------CCTTSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH---------------hHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence 99999999999999999999999987533221100000 0000111111122 22 3777899999
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCH
Q 044256 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260 (363)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 260 (363)
|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..+...+...|++
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-------------PDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------------CCcHHHHHHHHHHHHHcCCH
Confidence 999999988774 3367888899999999999999999988877653 24567888999999999999
Q ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCc-----------cHHHHHHHHHHHHccCC
Q 044256 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA-----------DVVAYNILIHALGKEGQ 329 (363)
Q Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~ 329 (363)
++|...++++.+.. +.+..++..+...+...|++++|.+.++++....... +...|..+..++.+.|+
T Consensus 223 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 223 QEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 99999999998775 5668889999999999999999999999988753221 57889999999999999
Q ss_pred hhHHHHHHHHHH
Q 044256 330 IKKENYLLLSME 341 (363)
Q Consensus 330 ~~~a~~~~~~m~ 341 (363)
+++|..++++.+
T Consensus 302 ~~~A~~~~~~~l 313 (327)
T 3cv0_A 302 PDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHTTCCS
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=1.5e-19 Score=151.98 Aligned_cols=254 Identities=12% Similarity=0.006 Sum_probs=205.2
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|++++|+..|+.+.+. .|.++.+|..+..++...|++++|+..|+++.+.. +.+..+|..+..++...|++++|...
T Consensus 79 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEA 155 (365)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHH
Confidence 7899999999999987 67689999999999999999999999999999874 44577899999999999999999999
Q ss_pred HHHHHhccCCCCCccCCchhhH----------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHH
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCY----------GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLE 151 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 151 (363)
|+++.+.. +.+...+ ..+...+.+.|++++|...++++.+..+.
T Consensus 156 ~~~al~~~-------p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------- 209 (365)
T 4eqf_A 156 LKNWIKQN-------PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD------------------- 209 (365)
T ss_dssp HHHHHHHC-------HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS-------------------
T ss_pred HHHHHHhC-------ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-------------------
Confidence 99999854 2223333 33467788888888888888887764211
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHH
Q 044256 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231 (363)
Q Consensus 152 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (363)
.++..++..+...+...|++++|+..|+++.+.. +.+..+|..+..+|...|++++|...+++++...
T Consensus 210 -------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---- 277 (365)
T 4eqf_A 210 -------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---- 277 (365)
T ss_dssp -------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred -------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Confidence 1256788999999999999999999999998873 3467899999999999999999999999887654
Q ss_pred HHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCc-----------chHHHHHHHHHHHHhcCChHHHHH
Q 044256 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE-----------LFVEIFNSLIRGCCKFGIFEIASE 300 (363)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~ 300 (363)
+.+..++..+..+|...|++++|...|+++.+.... .+..+|..+..++...|+.+.+.+
T Consensus 278 ---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 278 ---------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp ---------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 234778999999999999999999999998865311 136789999999999999999988
Q ss_pred HHHHh
Q 044256 301 LFNKL 305 (363)
Q Consensus 301 ~~~~~ 305 (363)
+..+-
T Consensus 349 ~~~~~ 353 (365)
T 4eqf_A 349 ANLGD 353 (365)
T ss_dssp HHTTC
T ss_pred HHHhh
Confidence 77653
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=3.3e-19 Score=147.31 Aligned_cols=254 Identities=9% Similarity=-0.064 Sum_probs=204.2
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|..+|+.+.+. .|.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..++...|++++|..
T Consensus 34 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 110 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALA 110 (327)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 47899999999999987 67688999999999999999999999999999874 4467788999999999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSL--------------ID-GLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVE 145 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.++.+.+.. +.+...+..+ .. .+...|++++|...++++.
T Consensus 111 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~------------------ 165 (327)
T 3cv0_A 111 SLRAWLLSQ-------PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL------------------ 165 (327)
T ss_dssp HHHHHHHTS-------TTTTTC--------------------CCTTSHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHhC-------CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH------------------
Confidence 999999854 3334444443 11 2444445555555555444
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044256 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMIL 225 (363)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (363)
+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 166 ---------~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 166 ---------EMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp ---------HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------hhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 432 3356788999999999999999999999998773 34678899999999999999999999988776
Q ss_pred hhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc------------hHHHHHHHHHHHHhcC
Q 044256 226 NGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL------------FVEIFNSLIRGCCKFG 293 (363)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~li~~~~~~~ 293 (363)
.. +.+...+..+..++...|++++|.+.++++.... +. +..++..+..++...|
T Consensus 235 ~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 235 IN-------------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HC-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred cC-------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 53 2456788899999999999999999999998764 33 5789999999999999
Q ss_pred ChHHHHHHHHHhhh
Q 044256 294 IFEIASELFNKLSC 307 (363)
Q Consensus 294 ~~~~a~~~~~~~~~ 307 (363)
++++|..++++...
T Consensus 301 ~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 301 RPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHTTCCSH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999876543
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1e-18 Score=141.45 Aligned_cols=250 Identities=9% Similarity=0.030 Sum_probs=154.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHH
Q 044256 33 GFCMEGNIRDASQLVKKMATFGCRPNV--TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL 110 (363)
Q Consensus 33 ~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 110 (363)
-....|++..|+..+++.... .|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-------~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-------SAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-------CChhHHHHHHHHHHH
Confidence 344567777777777665433 2332 3445566777777777777765433 1 255666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 111 CKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190 (363)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 190 (363)
...++.++|++.++++...+..|+ +...+..+...+...|++++|++.++.
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~--------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~--- 126 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVT--------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ--- 126 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCS--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT---
T ss_pred cCCCcHHHHHHHHHHHHhcccCCC--------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC---
Confidence 777777777777777665432221 334455555666777777777777665
Q ss_pred cCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHH---HHHHHHHhcCCHHHHHHHH
Q 044256 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN---IFIDGLCKNGHVLEVMELF 267 (363)
Q Consensus 191 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~ 267 (363)
+.+...+..+...+.+.|++++|...++++.... |+..... ..+..+...|++++|..+|
T Consensus 127 ---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~ 189 (291)
T 3mkr_A 127 ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--------------EDATLTQLATAWVSLAAGGEKLQDAYYIF 189 (291)
T ss_dssp ---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------------cCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 3455666666677777777777776666665432 4432111 1222333446777777777
Q ss_pred HHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhH-HHHHHHHHHH
Q 044256 268 PTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK-ENYLLLSMEE 342 (363)
Q Consensus 268 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~ 342 (363)
+++.+.. +.+...++.+..++.+.|++++|...++++.... +-++.++..++..+...|+.++ +.++++++.+
T Consensus 190 ~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 190 QEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7776653 5666677777777777777777777777766653 3466667777777777777654 4566676666
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=9.1e-21 Score=169.39 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=110.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHH---hccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHH
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLE---ISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (363)
-..||+++|++|++.|++++|.++|.+|. ..|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999998875 457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 320 LIHALGKEGQI-KKENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 320 li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
+|.++++.|+. ++|.++|++|.+.|+.||..||++++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 99999999985 7899999999999999999999977766554
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=3.8e-18 Score=138.05 Aligned_cols=269 Identities=9% Similarity=-0.022 Sum_probs=206.7
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLN-DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 79 (363)
.|+++.|+..++.+... .|.+ ......+.++|...|+++.|+..++.. -+|+..++..+...+...++.++|+
T Consensus 12 ~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp TTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 48899999988877554 4522 346677889999999999999877552 2567778888999999999999999
Q ss_pred HHHHHHHhccCCCCCccCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCC
Q 044256 80 KLHQEMVNGMGDFGGIYKP-NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL 158 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (363)
+.++++...+ ..| +...+..+..++...|++++|++.+++
T Consensus 86 ~~l~~ll~~~------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------------------------------- 126 (291)
T 3mkr_A 86 AELDREMSRS------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------------------------------- 126 (291)
T ss_dssp HHHHHHHHSC------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---------------------------------
T ss_pred HHHHHHHhcc------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---------------------------------
Confidence 9999998754 334 566777788999999999999998876
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHH---HHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHh
Q 044256 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSY---SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235 (363)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (363)
+.+...+..++..+.+.|++++|.+.|+.+.+.. |+.... ..++..+...|++++|..+|+++....
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-------- 196 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-------- 196 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--------
Confidence 1345678888999999999999999999998873 443211 223344445689999999888887654
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHH-HHHHHHHhhhCCCCccH
Q 044256 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI-ASELFNKLSCKNLVADV 314 (363)
Q Consensus 236 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~~~~ 314 (363)
+.+...++.+..++...|++++|...++++.... |.++.++..++..+...|+.++ +.++++++.+.. |+.
T Consensus 197 -----p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~ 268 (291)
T 3mkr_A 197 -----SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSH 268 (291)
T ss_dssp -----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTC
T ss_pred -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCC
Confidence 4577889999999999999999999999998876 6678899999999999999876 678999988763 433
Q ss_pred HHHHHHHHHHHccCChhHHHH
Q 044256 315 VAYNILIHALGKEGQIKKENY 335 (363)
Q Consensus 315 ~~~~~li~~~~~~g~~~~a~~ 335 (363)
... .....+.+.++++..
T Consensus 269 ~~~---~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 269 PFI---KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHH---HHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHHHHHHH
Confidence 321 223344445555443
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1.5e-15 Score=132.55 Aligned_cols=201 Identities=12% Similarity=0.006 Sum_probs=135.8
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cC
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCM----EGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR----TG 73 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~ 73 (363)
+++++|...|+...+. . ++.++..|...|.. .+++++|...|++..+.| +...+..|...|.. .+
T Consensus 57 ~~~~~A~~~~~~a~~~---~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ---G-YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCHHHHHHHHHHHHHT---T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHHHHHHC---C-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 5677888888887764 2 56677778888877 788888888888877654 55566667777776 67
Q ss_pred ChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcch------hhhc----
Q 044256 74 NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK----DRLVDQTKDLFMEMKDKGINANT------LLCK---- 139 (363)
Q Consensus 74 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~------~~~~---- 139 (363)
++++|...|+...+.+ +...+..|...|.. .+++++|.+.|++..+.+. +.. .+..
T Consensus 130 ~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~-~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGN-VWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp CHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSS
T ss_pred CHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCC
Confidence 8888888888877643 35566666677766 6778888888887776542 222 2333
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cC
Q 044256 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL----VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK----NF 211 (363)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 211 (363)
.+++++|...+++..+.+ +...+..+...|.. .+++++|..+|+...+.| +...+..+...|.. .+
T Consensus 200 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 677777777777777654 34455666666664 667777777777766653 34455555555555 67
Q ss_pred ChhHHHHHHHHHHH
Q 044256 212 NVEEAMNVSREMIL 225 (363)
Q Consensus 212 ~~~~a~~~~~~~~~ 225 (363)
++++|+..+++..+
T Consensus 274 d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 274 EPLKALEWYRKSAE 287 (490)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 77777766666543
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=167.28 Aligned_cols=141 Identities=6% Similarity=-0.045 Sum_probs=119.8
Q ss_pred CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044256 194 MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273 (363)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 273 (363)
..-..||+++|++|++.|+.++|..+|.+|.+ |...|+.||..|||+||.+|++.|++++|.++|++|.+.
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~---------m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~ 194 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG---------QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------SHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---------HhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 33456899999999999999999988776643 234568899999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHhcCCh-HHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 044256 274 NCELFVEIFNSLIRGCCKFGIF-EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348 (363)
Q Consensus 274 ~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 348 (363)
|+.||..||++||.++++.|+. ++|.++|++|.+.|+.||..+|++++.+..+ +.+++..+++ .-++.|+
T Consensus 195 G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCC
T ss_pred CCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCC
Confidence 9999999999999999999985 7899999999999999999999999876555 3455555555 3355554
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2e-16 Score=139.55 Aligned_cols=334 Identities=8% Similarity=-0.002 Sum_probs=225.8
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH-HhcCChhHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGL-RRTGNMNLTL 79 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~ 79 (363)
.|++++|..+|+.+.+. .|.+...|..++..+.+.|++++|..+|++++.. .|+...|...+... ...|+.+.|.
T Consensus 25 ~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp SSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred hCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHH
Confidence 37889999999999986 7878999999999999999999999999999987 47877777777533 4567777766
Q ss_pred H----HHHHHHhccCCCCCccCCchhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCcch-hh--------
Q 044256 80 K----LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK---------DRLVDQTKDLFMEMKDKGINANT-LL-------- 137 (363)
Q Consensus 80 ~----~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~-~~-------- 137 (363)
+ +|+.....-+. .+++...|...+....+ .|+++.|..+|++..+....... .+
T Consensus 101 ~~~~~~~~~al~~~g~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~ 176 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGM----EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 176 (530)
T ss_dssp HHHHHHHHHHHHHTTT----STTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC----CcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Confidence 5 77766653210 12456777777776554 67888888888888763211100 00
Q ss_pred ------------hccCChHHHHH---------------------------------------------------------
Q 044256 138 ------------CKKTKLVEANR--------------------------------------------------------- 148 (363)
Q Consensus 138 ------------~~~~~~~~a~~--------------------------------------------------------- 148 (363)
...+++..|..
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~ 256 (530)
T 2ooe_A 177 GINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKR 256 (530)
T ss_dssp HHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHH
T ss_pred hhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHH
Confidence 01122333332
Q ss_pred ---HHHHHHHcCCCCchhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 044256 149 ---LLELMMQRGLNPVIFTYTPLLNGYCL-------VGKVN-------VAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211 (363)
Q Consensus 149 ---~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 211 (363)
.|++++... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|
T Consensus 257 a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 257 VMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 333333221 2234445555555554 57766 78888887775212335677778888888888
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHH-
Q 044256 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPET--FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG- 288 (363)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 288 (363)
++++|..+|++++... |+. ..|..++..+.+.|++++|.++|++..+.. +.+...|...+..
T Consensus 336 ~~~~A~~~~~~al~~~--------------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIE--------------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME 400 (530)
T ss_dssp CHHHHHHHHHHHHHSS--------------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcc--------------ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHH
Confidence 8888888777776542 442 478888888888889999999999888753 3333333332222
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHH
Q 044256 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG-CALD--VDTFNTLMISF 359 (363)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~ 359 (363)
+...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+...
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 335889999999999888763 4468888888888889999999999999998863 2332 33555544443
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=1.2e-15 Score=133.14 Aligned_cols=301 Identities=11% Similarity=-0.014 Sum_probs=248.3
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cC
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCM----EGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR----TG 73 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~ 73 (363)
+++++|...|+...+.| ++..+..+...|.. .+++++|+..|++....| +...+..|...|.. .+
T Consensus 93 ~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 67899999999998752 67888889999988 889999999999998865 56678888888887 78
Q ss_pred ChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcch-----hhhc----c
Q 044256 74 NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK----DRLVDQTKDLFMEMKDKGINANT-----LLCK----K 140 (363)
Q Consensus 74 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~-----~~~~----~ 140 (363)
+.++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+..... .+.. .
T Consensus 166 d~~~A~~~~~~a~~~---------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQ---------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp CHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHHC---------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 999999999999874 356788888888888 89999999999999887532221 3332 7
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-----C
Q 044256 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL----VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN-----F 211 (363)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~ 211 (363)
+++++|...+++..+.+ +...+..+...|.. .++.++|..+|+...+.| +...+..+...|... +
T Consensus 237 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcC
Confidence 89999999999998875 34566777777877 899999999999998775 556777777778776 8
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 044256 212 NVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG---HVLEVMELFPTLEISNCELFVEIFNSLIRG 288 (363)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 288 (363)
++++|...+++..+.+ +...+..+...|...| ++++|++.|++..+.+ ++..+..|...
T Consensus 311 ~~~~A~~~~~~a~~~~---------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 372 (490)
T 2xm6_A 311 NREQAISWYTKSAEQG---------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNA 372 (490)
T ss_dssp CHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 9999999888876643 4456677777777756 7899999999998875 56788888888
Q ss_pred HHh----cCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCC
Q 044256 289 CCK----FGIFEIASELFNKLSCKNLVADVVAYNILIHALGK----EGQIKKENYLLLSMEENGC 345 (363)
Q Consensus 289 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 345 (363)
|.. .+++++|...|++..+.+ ++..+..+...|.+ .+++++|...|++..+.+.
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 888 899999999999999875 67788888888887 8999999999999998763
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=4.1e-19 Score=147.14 Aligned_cols=270 Identities=12% Similarity=0.077 Sum_probs=105.1
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|++++|.+.++++ + ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+..
T Consensus 17 ~~ld~A~~fae~~------~-~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 17 GNLDRAYEFAERC------N-EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC------C-ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5678888888888 2 446999999999999999999999965 35777999999999999999999998
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch------hhhccCChHHHHHHHHHHHH
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLELMMQ 155 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~ 155 (363)
++..++. .+++.+.+.++.+|.+.|+++++.++++. +.... .+...|.+++|...|..+
T Consensus 84 l~~ark~--------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 84 LQMARKK--------ARESYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT--
T ss_pred HHHHHHh--------CccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 8877763 45578899999999999999998888752 11111 566777777777777755
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHh
Q 044256 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235 (363)
Q Consensus 156 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (363)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------------- 202 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------------- 202 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-------------
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-------------
Confidence 36777777777777777777777766 2667777777777777777777433221
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHH
Q 044256 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315 (363)
Q Consensus 236 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (363)
+..++.....++..|.+.|++++|..+++...... +-...+|+-|..+|++- ++++..+.++...+. .+
T Consensus 203 ----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~---in-- 271 (449)
T 1b89_A 203 ----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSR---VN-- 271 (449)
T ss_dssp ----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTT---SC--
T ss_pred ----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH---hc--
Confidence 11233334456777777777777777777776655 55566777776666654 344444333333221 11
Q ss_pred HHHHHHHHHHccCChhHHHHHH
Q 044256 316 AYNILIHALGKEGQIKKENYLL 337 (363)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~ 337 (363)
..-+|++|....-|.+..-++
T Consensus 272 -i~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 272 -IPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp -HHHHHHHHHTTTCHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHHHHHH
Confidence 123556666666666555444
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.4e-16 Score=138.57 Aligned_cols=330 Identities=11% Similarity=-0.045 Sum_probs=213.8
Q ss_pred ChhhhhHHHHHHHHHHc-------CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCC-CcccHHHHH
Q 044256 1 TSKVLGALMAFGSFIRR-------CYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFG------CRP-NVTTCDTLI 66 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~-~~~~~~~l~ 66 (363)
.|++++|++.|++..+. ...|....+|+.+..+|...|++++|...+++..+.. ..+ ...++..+.
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 38899999999987652 1245456789999999999999999999999876531 111 234555555
Q ss_pred HHHHhc--CChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCcch------
Q 044256 67 TGLRRT--GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDG---LCKDRLVDQTKDLFMEMKDKGINANT------ 135 (363)
Q Consensus 67 ~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~------ 135 (363)
.++... +++++|+..|++..+.. |.+...+..+..+ +...++.++|++.+++..+..+....
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~-------p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKK-------PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 555544 57899999999999854 3445566655555 34567788899999988876543322
Q ss_pred -----hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 044256 136 -----LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210 (363)
Q Consensus 136 -----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (363)
.....+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++..+..+|...
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 1234578889999999988775 4567788899999999999999999999988873 23555666665555322
Q ss_pred -------------------CChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 211 -------------------FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLE 271 (363)
Q Consensus 211 -------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 271 (363)
+..+.|...+++..... +.+...+..+...+...|++++|+..|++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-------------DNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-------------TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-------------CchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 12333444443333322 2345678888999999999999999999998
Q ss_pred hccCcchHH--HHHHHHH-HHHhcCChHHHHHHHHHhhhCC-----------------------CCccHHHHHHHHHHHH
Q 044256 272 ISNCELFVE--IFNSLIR-GCCKFGIFEIASELFNKLSCKN-----------------------LVADVVAYNILIHALG 325 (363)
Q Consensus 272 ~~~~~~~~~--~~~~li~-~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~li~~~~ 325 (363)
.....+... .+..+.. .....|++++|...|++..+.. -+.+..+|..+..+|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQE 441 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 775333221 2333332 3457789999999988876542 1335678889999999
Q ss_pred ccCChhHHHHHHHHHHHcC-CCCCHHHH
Q 044256 326 KEGQIKKENYLLLSMEENG-CALDVDTF 352 (363)
Q Consensus 326 ~~g~~~~a~~~~~~m~~~g-~~p~~~~~ 352 (363)
..|++++|++.|++.++.| ..|+..+|
T Consensus 442 ~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHCC----------------------
T ss_pred HcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999864 34555443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.5e-16 Score=126.70 Aligned_cols=231 Identities=10% Similarity=0.006 Sum_probs=142.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
.+..|..+...+...|++++|+..|+++.+.. .+..+|..+..++...|++++|...++.+.+..+......+....+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 46789999999999999999999999999887 7888999999999999999999999999988541100000001577
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (363)
|..+..++...|++++|...|++..+.. |+. ..+...|++++|.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------------~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH-----------------------------RTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------CCH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-----------------------------chh-------HHHHHHhHHHHHH
Confidence 8888888888888888888888887642 221 2334445555666
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 044256 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 262 (363)
..++.+.... +.+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++
T Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------~~~~~~~~~l~~~~~~~~~~~~ 191 (258)
T 3uq3_A 126 KKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------------PEDARGYSNRAAALAKLMSFPE 191 (258)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------------cccHHHHHHHHHHHHHhCCHHH
Confidence 6555555431 1123344444444555555555555444443322 1233344444444445555555
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 044256 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306 (363)
Q Consensus 263 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 306 (363)
|...++++.+.. +.+..++..+..++...|++++|...+++..
T Consensus 192 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 192 AIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555444432 3334444444444444444444444444443
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=4.8e-17 Score=130.91 Aligned_cols=119 Identities=8% Similarity=-0.102 Sum_probs=56.9
Q ss_pred hhhhhHHHHHHHHHHcCC--CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 044256 2 SKVLGALMAFGSFIRRCY--RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~--~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 79 (363)
|++++|+..|+.+.+... .|.++.+|..+...+...|++++|+..|+++.+.. +.+..+|..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555554311 12234445555555555555555555555554442 223444455555555555555555
Q ss_pred HHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 80 KLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 128 (363)
..|+++.+.. +.+..++..+..++.+.|++++|...++++.+
T Consensus 98 ~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 98 EAFDSVLELD-------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555555432 22344444455555555555555555544443
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.7e-16 Score=126.38 Aligned_cols=244 Identities=8% Similarity=-0.007 Sum_probs=199.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhh
Q 044256 59 VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138 (363)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 138 (363)
...|..+...+...|++++|...|+++.+. . .+..+|..+..++...|++++|...+++..+....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------ 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL-------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE------ 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc------
Confidence 346778888999999999999999999885 2 66788999999999999999999999998764110
Q ss_pred ccCChHHHHHHHHHHHHcCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChh
Q 044256 139 KKTKLVEANRLLELMMQRGLNPV----IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVE 214 (363)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 214 (363)
..++ ..++..+...+...|++++|...|+...+. .|+. ..+...|+++
T Consensus 71 -------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~ 122 (258)
T 3uq3_A 71 -------------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAE 122 (258)
T ss_dssp -------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHH
T ss_pred -------------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHH
Confidence 0111 468888999999999999999999999886 3443 3466778899
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCC
Q 044256 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294 (363)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 294 (363)
+|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 123 ~a~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 188 (258)
T 3uq3_A 123 KELKKAEAEAYVN-------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMS 188 (258)
T ss_dssp HHHHHHHHHHHCC-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcC-------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCC
Confidence 9998888877654 1345678888999999999999999999999875 6678899999999999999
Q ss_pred hHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHH
Q 044256 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENG----CALDVDTFNTLMISF 359 (363)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~ 359 (363)
+++|...++++.+.. +.+...|..+..++...|++++|...+++..+.. ..|+.......+..+
T Consensus 189 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 189 FPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999998874 5568899999999999999999999999998742 227766655555443
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=4.8e-15 Score=128.86 Aligned_cols=309 Identities=10% Similarity=-0.063 Sum_probs=220.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATF-----G--CRP-NVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGG 94 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 94 (363)
....||.+...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+.......
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4677999999999999999999999987542 1 122 3457889999999999999999999988764322211
Q ss_pred ccCC-chhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCcch----------hhhccCChHHHHHHHHHHHHcCCCCc
Q 044256 95 IYKP-NVFCYGSLIDGLCKD--RLVDQTKDLFMEMKDKGINANT----------LLCKKTKLVEANRLLELMMQRGLNPV 161 (363)
Q Consensus 95 ~~~~-~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (363)
...+ ...++..+..++... +++++|+..|++..+..+.... .+...++.++|.+.+++.++.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1222 345666666666554 5699999999999886543222 1335677788999999888764 344
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHh
Q 044256 162 IFTYTPLLNGYCL----VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237 (363)
Q Consensus 162 ~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (363)
..++..+...+.. .++.++|.+++++..... +.+...+..+...|...|++++|...++++.+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------- 277 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---------- 277 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC----------
Confidence 5566656555544 467889999999887763 4467788889999999999999999999887654
Q ss_pred cCCCCChHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHH
Q 044256 238 CNVVPETFTCNIFIDGLCK-------------------NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298 (363)
Q Consensus 238 ~~~~~~~~~~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 298 (363)
+.+..++..+..+|.. .+..+.|...+++..... +.+..++..+...|...|++++|
T Consensus 278 ---p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 278 ---PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHH
T ss_pred ---CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHH
Confidence 2234455555544432 234677888888887765 56677889999999999999999
Q ss_pred HHHHHHhhhCCCCccHH--HHHHHHH-HHHccCChhHHHHHHHHHHHcCCCCCH
Q 044256 299 SELFNKLSCKNLVADVV--AYNILIH-ALGKEGQIKKENYLLLSMEENGCALDV 349 (363)
Q Consensus 299 ~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~ 349 (363)
...|++..+....+... .+..+.. .....|++++|+..|++.++ +.|+.
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~ 405 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKS 405 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCC
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccc
Confidence 99999998875433221 2333332 34578999999999999887 44543
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=2.1e-16 Score=122.26 Aligned_cols=201 Identities=12% Similarity=-0.009 Sum_probs=156.5
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCch
Q 044256 21 PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNV 100 (363)
Q Consensus 21 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
|.++..+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++..+.. +.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-------PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcH
Confidence 3488899999999999999999999999999874 4467788999999999999999999999999865 5567
Q ss_pred hhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHH
Q 044256 101 FCYGSLIDGLCKD-----------RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLL 169 (363)
Q Consensus 101 ~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 169 (363)
..+..+..++... |++++|+..|++..+.. +-+...+..+.
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------------P~~~~~~~~lg 125 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN----------------------------PRYAPLHLQRG 125 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC----------------------------cccHHHHHHHH
Confidence 8889999999888 77777777777776541 23467788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHH
Q 044256 170 NGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNI 249 (363)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (363)
..+...|++++|+..|++..+.. .+...+..+..++...|++++|...+++.++.. +.+...+..
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------P~~~~~~~~ 190 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-------------PKDLDLRVR 190 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------------TTCHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCChHHHHH
Confidence 99999999999999999998886 688889999999999999999999999887764 245677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 044256 250 FIDGLCKNGHVLEVMELFPTLEI 272 (363)
Q Consensus 250 ll~~~~~~~~~~~a~~~~~~~~~ 272 (363)
+..++...|++++|...+++...
T Consensus 191 la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 191 YASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHTC----------------
T ss_pred HHHHHHHccCHHHHHHHHHHHhh
Confidence 88899999999999999887653
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=1.8e-16 Score=127.48 Aligned_cols=249 Identities=11% Similarity=-0.046 Sum_probs=191.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHH
Q 044256 34 FCMEGNIRDASQLVKKMATFGCR---PNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL 110 (363)
Q Consensus 34 ~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 110 (363)
+...|++++|+..|+++.+.... .+..+|..+..++...|++++|...|+++.+.. +.+..+|..+..++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYL 87 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHH
Confidence 34568899999999999986321 135678889999999999999999999999864 55788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 111 CKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190 (363)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 190 (363)
...|++++|...|++..+.. +.+..++..+...+...|++++|...|+.+.+
T Consensus 88 ~~~~~~~~A~~~~~~al~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELD----------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcC----------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999988742 23467888999999999999999999999988
Q ss_pred cCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044256 191 KGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270 (363)
Q Consensus 191 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 270 (363)
. .|+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...++..
T Consensus 140 ~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 140 D--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-------------DKEQWGW-NIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-------------CCCSTHH-HHHHHHTTSSCHHHHHHHHHHH
T ss_pred h--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------------CcchHHH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 6 3444444455555677799999998887766543 2333344 4677788888899999999988
Q ss_pred HhccCc---chHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHH
Q 044256 271 EISNCE---LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLL 337 (363)
Q Consensus 271 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 337 (363)
...... .+..++..+...|...|++++|...|+++.... |+. +.....++...|++++|++.+
T Consensus 204 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 204 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred hcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 765311 125788899999999999999999999998864 322 233355677888888888776
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=2.7e-15 Score=120.43 Aligned_cols=250 Identities=10% Similarity=-0.048 Sum_probs=175.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
|+..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++.+.+... ........
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~ 76 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN----ATKAKSAD 76 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC----TTTCCHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC----chhHHHHH
Confidence 45567777888889999999999999988764 33455888888889999999999999999887320 01111334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (363)
|..+...+...|++++|...|++..+.. +.+..++..+...|...|++++|+
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD----------------------------TTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC----------------------------cccHHHHHHHHHHHHHccCHHHHH
Confidence 7888888888899999988888887642 224567888888888899999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCC---
Q 044256 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGH--- 259 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--- 259 (363)
..|++..+.. +.+...+..+...+...+++++|...++++.+.. +.+...+..+..++...|+
T Consensus 129 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------p~~~~~~~~~~~~~~~~~~~~~ 194 (272)
T 3u4t_A 129 QYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-------------PNIYIGYLWRARANAAQDPDTK 194 (272)
T ss_dssp HHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------TTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------ccchHHHHHHHHHHHHcCcchh
Confidence 9888877762 3355566666623444558888888888776654 2235566667777777777
Q ss_pred HHHHHHHHHHHHhcc-Ccch------HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHH
Q 044256 260 VLEVMELFPTLEISN-CELF------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320 (363)
Q Consensus 260 ~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (363)
+++|...++++.+.. -.|+ ..+|..+...|...|++++|.+.|+++.+.. +.+...+..+
T Consensus 195 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp SCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHh
Confidence 777888887776542 1122 2567777778888888888888888887763 3344444444
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=5.6e-16 Score=119.88 Aligned_cols=201 Identities=14% Similarity=-0.070 Sum_probs=159.9
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 044256 97 KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176 (363)
Q Consensus 97 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (363)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------------p~~~~a~~~lg~~~~~~g 53 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN----------------------------PQDPEALYWLARTQLKLG 53 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----------------------------SSCHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHcC
Confidence 5677888999999999999999999999988642 335678888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-----------CChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChH
Q 044256 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN-----------FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETF 245 (363)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (363)
++++|+..+++..+.. +.+...+..+..++... |++++|+..+++.++.. +.+..
T Consensus 54 ~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------------P~~~~ 119 (217)
T 2pl2_A 54 LVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-------------PRYAP 119 (217)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-------------TTCHH
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-------------cccHH
Confidence 9999999999998874 33667888888999999 99999999999887764 23567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 325 (363)
.+..+..++...|++++|+..|++..+.. .++..+..+..+|...|++++|...|+++.+.. +.+...+..+..++.
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 88889999999999999999999999887 678899999999999999999999999999874 557888999999999
Q ss_pred ccCChhHHHHHHHHHHH
Q 044256 326 KEGQIKKENYLLLSMEE 342 (363)
Q Consensus 326 ~~g~~~~a~~~~~~m~~ 342 (363)
+.|++++|...|++...
T Consensus 197 ~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 197 LKGKAEEAARAAALEHH 213 (217)
T ss_dssp C----------------
T ss_pred HccCHHHHHHHHHHHhh
Confidence 99999999999987654
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=9.6e-16 Score=128.13 Aligned_cols=253 Identities=10% Similarity=-0.007 Sum_probs=204.4
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHhccCCCCCccCC
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN-MNLTLKLHQEMVNGMGDFGGIYKP 98 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 98 (363)
.|.+..+|+.+..++.+.|++++|+..|+++++.. +-+..+|+.+..++...|+ +++|+..|+++++.. +.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------P~ 164 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------PK 164 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------TT
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------CC
Confidence 44457789999999999999999999999999874 3456788999999999997 999999999999965 56
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 044256 99 NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178 (363)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (363)
+...|+.+..++...|++++|+..|+++++.. +-+...|..+..++.+.|++
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld----------------------------P~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD----------------------------AKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------------ccCHHHHHHHHHHHHHcCCh
Confidence 78899999999999999999999999988752 33567899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-cCChhHH-----HHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHH
Q 044256 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCK-NFNVEEA-----MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFID 252 (363)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 252 (363)
++|+..|+++++.. +-+...|+.+..++.. .|..++| +..+++.+... +-+...|..+..
T Consensus 217 ~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-------------P~~~~a~~~l~~ 282 (382)
T 2h6f_A 217 DNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-------------PHNESAWNYLKG 282 (382)
T ss_dssp TTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-------------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-------------CCCHHHHHHHHH
Confidence 99999999999874 3367889999888888 6665777 46677666554 235667888888
Q ss_pred HHHhcC--CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcC---------ChHHHHHHHHHh-hhCCCCccHHHHHHH
Q 044256 253 GLCKNG--HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG---------IFEIASELFNKL-SCKNLVADVVAYNIL 320 (363)
Q Consensus 253 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l 320 (363)
.+...| ++++|++.+.++ +.. +.+...+..+..+|.+.| .+++|.++++++ .+.+ +.....|..+
T Consensus 283 ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~ 359 (382)
T 2h6f_A 283 ILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYI 359 (382)
T ss_dssp HHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHH
T ss_pred HHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 888888 689999999888 433 667788889999998874 358999999998 6653 3455666666
Q ss_pred HHHHH
Q 044256 321 IHALG 325 (363)
Q Consensus 321 i~~~~ 325 (363)
...+.
T Consensus 360 ~~~l~ 364 (382)
T 2h6f_A 360 GRSLQ 364 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 41
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.5e-17 Score=137.92 Aligned_cols=244 Identities=12% Similarity=0.076 Sum_probs=98.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCC
Q 044256 36 MEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL 115 (363)
Q Consensus 36 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 115 (363)
+.|++++|.++++++. .| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|+
T Consensus 15 ~~~~ld~A~~fae~~~----~~--~vWs~La~A~l~~g~~~eAIdsfik------------a~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN----EP--AVWSQLAKAQLQKGMVKEAIDSYIK------------ADDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC----Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------------CCCHHHHHHHHHHHHhCCC
Confidence 6788999999999983 23 4899999999999999999999953 3566799999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcch------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 116 VDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMA 189 (363)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 189 (363)
+++|...++..++....+.. .+.+.|++.++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 77 ~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 77 WEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 99999988877764222111 6677788888777764 366678888888888888888888888865
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044256 190 RKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPT 269 (363)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 269 (363)
..|..+..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------------------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------------------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------------------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------------------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 36888888888888888888777765 3667888888888888888888655443
Q ss_pred HHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHH
Q 044256 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338 (363)
Q Consensus 270 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 338 (363)
+. .++.-...++..|.+.|.+++|..+++...... +-....|+-+..+|++- ++++..+.++
T Consensus 203 L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~ 264 (449)
T 1b89_A 203 IV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLE 264 (449)
T ss_dssp TT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 22 222334467788888888888888888887665 55677777777666654 2344433333
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=1.6e-15 Score=121.87 Aligned_cols=246 Identities=8% Similarity=-0.068 Sum_probs=192.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhh
Q 044256 59 VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138 (363)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 138 (363)
...+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...+++..+.+..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----- 70 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT----- 70 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch-----
Confidence 4456677888999999999999999999864 4556689999999999999999999999988732110
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHH
Q 044256 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218 (363)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 218 (363)
......|..+...+...|++++|+..|+...+.. +.+...+..+...|...|++++|..
T Consensus 71 --------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 71 --------------------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp --------------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHH
Confidence 1123458889999999999999999999998863 3356789999999999999999998
Q ss_pred HHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCC---h
Q 044256 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI---F 295 (363)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~ 295 (363)
.+++.+... +.+...+..+...+...+++++|...++++.+.. +.+...+..+..++...|+ +
T Consensus 130 ~~~~al~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~ 195 (272)
T 3u4t_A 130 YMEKQIRPT-------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQ 195 (272)
T ss_dssp HHGGGCCSS-------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSS
T ss_pred HHHHHhhcC-------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhh
Confidence 777665432 2345666666634555669999999999999875 5567888888888888888 8
Q ss_pred HHHHHHHHHhhhCC-CCcc------HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHH
Q 044256 296 EIASELFNKLSCKN-LVAD------VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353 (363)
Q Consensus 296 ~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 353 (363)
++|...++++.+.. -.|+ ...|..+...|...|++++|...|++..+. .|+...-.
T Consensus 196 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~ 258 (272)
T 3u4t_A 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAI 258 (272)
T ss_dssp CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHH
Confidence 88999988887541 1233 257888889999999999999999999984 56654433
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.73 E-value=8.7e-15 Score=113.83 Aligned_cols=206 Identities=7% Similarity=-0.125 Sum_probs=145.7
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|.++..|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~ 75 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------PDS 75 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCC
Confidence 45467788888888888888888888888887764 3456677788888888888888888888888754 456
Q ss_pred hhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 044256 100 VFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178 (363)
Q Consensus 100 ~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (363)
..++..+...+... |++++|...++++.+.+.. +.+...+..+...+...|++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTY--------------------------PTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC--------------------------SCHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC--------------------------cchHHHHHHHHHHHHHcCCH
Confidence 67777888888888 8888888888877751111 22345667777777788888
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCC-CChHHHHHHHHHHHhc
Q 044256 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV-PETFTCNIFIDGLCKN 257 (363)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~ 257 (363)
++|...++.+.+.. +.+...+..+...+...|++++|...++++.... + .+...+..+...+...
T Consensus 130 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 195 (225)
T 2vq2_A 130 GLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-------------EVLQADDLLLGWKIAKAL 195 (225)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCCCHHHHHHHHHHHHhc
Confidence 88888887776653 2245666677777777777777777766665543 2 3445555556666667
Q ss_pred CCHHHHHHHHHHHHhc
Q 044256 258 GHVLEVMELFPTLEIS 273 (363)
Q Consensus 258 ~~~~~a~~~~~~~~~~ 273 (363)
|+.+.+..+++.+.+.
T Consensus 196 ~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 196 GNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh
Confidence 7777777777776544
No 44
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=5.5e-14 Score=123.96 Aligned_cols=324 Identities=8% Similarity=-0.014 Sum_probs=213.0
Q ss_pred HHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccC
Q 044256 11 FGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMG 90 (363)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 90 (363)
|+..++. .|.+..+|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++..
T Consensus 2 le~al~~--~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-- 75 (530)
T 2ooe_A 2 AEKKLEE--NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-- 75 (530)
T ss_dssp HHHHHHH--CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--
T ss_pred hhhHhhh--CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence 5666665 7778999999998 478999999999999999863 446668999999999999999999999999984
Q ss_pred CCCCccCCchhhHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-CCCcch--h------h----------hccCChHHH
Q 044256 91 DFGGIYKPNVFCYGSLIDGL-CKDRLVDQTKD----LFMEMKDK-GINANT--L------L----------CKKTKLVEA 146 (363)
Q Consensus 91 ~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~~~--~------~----------~~~~~~~~a 146 (363)
.|+...|...+... ...|+.+.|.+ +|++.... |..|+. . + ...|+++.|
T Consensus 76 ------~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 76 ------VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp ------CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred ------CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 56888888777533 34577666654 77766553 444433 1 1 126889999
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HcC---CCC---------
Q 044256 147 NRLLELMMQRGLNPVIFTYTPLLNGY-------------CLVGKVNVAIALFDSMA------RKG---FMP--------- 195 (363)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~li~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~--------- 195 (363)
..+|+..++....+....|....... .+.++++.|..++.... +.. ++|
T Consensus 150 ~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 150 RRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 99999988731111122333222110 01233444544444311 110 122
Q ss_pred -----------------------------------------cHhHHHHHHHHHHh-------cCChh-------HHHHHH
Q 044256 196 -----------------------------------------DVFSYSVLINGYCK-------NFNVE-------EAMNVS 220 (363)
Q Consensus 196 -----------------------------------------~~~~~~~l~~~~~~-------~~~~~-------~a~~~~ 220 (363)
+...|..+...+.+ .|+++ +|..++
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 22233333333332 34443 343333
Q ss_pred HHHHHhhHHHHHHHhHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchH-HHHHHHHHHHHhcCChHHH
Q 044256 221 REMILNGFKKIFNEMKLCNVVP-ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFV-EIFNSLIRGCCKFGIFEIA 298 (363)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a 298 (363)
++.+. .+.| +...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|
T Consensus 310 ~~Al~-------------~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 310 ERAIS-------------TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHTT-------------TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------------HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHH
Confidence 33321 1224 46788889999999999999999999999863 3233 5899999999999999999
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHH-HHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 044256 299 SELFNKLSCKNLVADVVAYNILIHA-LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362 (363)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 362 (363)
.++|++..+.. +.+...|...... +...|++++|..+|++.++.. +-+...|..++..+.+.
T Consensus 376 ~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 376 RMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp HHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhC
Confidence 99999998763 2233444333222 346899999999999998852 23467777776665543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=9.7e-15 Score=115.79 Aligned_cols=199 Identities=9% Similarity=-0.086 Sum_probs=95.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhc
Q 044256 60 TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCK 139 (363)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (363)
..|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------- 101 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-------PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------- 101 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------
Confidence 344555555556666666666666655532 3345555555556666666666666655555421
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCChhHHHH
Q 044256 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP-DVFSYSVLINGYCKNFNVEEAMN 218 (363)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 218 (363)
+.+...+..+...+...|++++|..+++++.+.+..| +...+..+...+...|++++|..
T Consensus 102 -------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 102 -------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 1133445555555555566666666555555421122 23344444444445555555544
Q ss_pred HHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHH
Q 044256 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298 (363)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 298 (363)
.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 163 ~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 163 YFEKSLRLN-------------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHHHHHHC-------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhcC-------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHH
Confidence 444443321 1123334444444444444444444444444332 23333444444444444444444
Q ss_pred HHHHHHhhh
Q 044256 299 SELFNKLSC 307 (363)
Q Consensus 299 ~~~~~~~~~ 307 (363)
.+.++++.+
T Consensus 229 ~~~~~~~~~ 237 (252)
T 2ho1_A 229 ASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=1e-14 Score=121.95 Aligned_cols=241 Identities=7% Similarity=-0.063 Sum_probs=200.2
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCcchhhh
Q 044256 60 TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL-VDQTKDLFMEMKDKGINANTLLC 138 (363)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 138 (363)
..|..+..++...|++++|+..++++++.. +.+..+|+.+..++...|+ +++|+..|++.++..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------- 162 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------- 162 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------
Confidence 457788888999999999999999999864 5568899999999999996 999999999988752
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHH
Q 044256 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218 (363)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 218 (363)
+-+...|..+..++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+.
T Consensus 163 --------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 163 --------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHH
Confidence 2356789999999999999999999999999874 3377889999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHhccCcchHHHHHHHHHHHHhc
Q 044256 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK-NGHVLEV-----MELFPTLEISNCELFVEIFNSLIRGCCKF 292 (363)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 292 (363)
.+++++..+ +.+...|+.+..++.. .|..++| +..+++.+... +-+...|..+...+...
T Consensus 222 ~~~~al~l~-------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 222 YVDQLLKED-------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR 287 (382)
T ss_dssp HHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhC-------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHcc
Confidence 999988765 2467789999999988 6665777 58899888875 66788999999999998
Q ss_pred C--ChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccC---------ChhHHHHHHHHH-HHcCCCCCHHHHHH
Q 044256 293 G--IFEIASELFNKLSCKNLVADVVAYNILIHALGKEG---------QIKKENYLLLSM-EENGCALDVDTFNT 354 (363)
Q Consensus 293 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~m-~~~g~~p~~~~~~~ 354 (363)
| ++++|.+.+.++ +. -+.+...+..+..+|.+.| .+++|+++|+++ .+ +.|....|..
T Consensus 288 g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~ 357 (382)
T 2h6f_A 288 GLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWR 357 (382)
T ss_dssp CGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHH
T ss_pred CccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHH
Confidence 8 699999999998 44 2557788899999998874 358999999999 65 5676554443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=7.5e-15 Score=116.44 Aligned_cols=212 Identities=9% Similarity=-0.100 Sum_probs=175.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 044256 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179 (363)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 179 (363)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------------~~~~~~~~~la~~~~~~~~~~ 88 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID----------------------------PSSADAHAALAVVFQTEMEPK 88 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----------------------------CChHHHHHHHHHHHHHcCCHH
Confidence 5677788888888888888888888877641 335678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC-ChHHHHHHHHHHHhcC
Q 044256 180 VAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ETFTCNIFIDGLCKNG 258 (363)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ 258 (363)
+|...++++.+.. +.+...+..+...+...|++++|...++++.. .+..| +...+..+...+...|
T Consensus 89 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 89 LADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------------DTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------------CTTCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------------CccCcccHHHHHHHHHHHHHcC
Confidence 9999999998874 33677888899999999999999988877654 11223 4567888889999999
Q ss_pred CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHH
Q 044256 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338 (363)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 338 (363)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++
T Consensus 156 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp CHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998875 5568889999999999999999999999998864 5578888899999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHH
Q 044256 339 SMEENGCALDVDTFNTLM 356 (363)
Q Consensus 339 ~m~~~g~~p~~~~~~~ll 356 (363)
++.+. .|+...+..++
T Consensus 234 ~~~~~--~p~~~~~~~~l 249 (252)
T 2ho1_A 234 QLKRL--YPGSLEYQEFQ 249 (252)
T ss_dssp HHHHH--CTTSHHHHHHH
T ss_pred HHHHH--CCCCHHHHHHH
Confidence 99984 56655554443
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=7.3e-14 Score=112.19 Aligned_cols=226 Identities=11% Similarity=-0.045 Sum_probs=151.5
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhccCCCCCcc
Q 044256 21 PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR----TGNMNLTLKLHQEMVNGMGDFGGIY 96 (363)
Q Consensus 21 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 96 (363)
|.++.++..+...+...|++++|+..|++..+. .+..++..+...+.. .+++++|...|++..+.+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------- 72 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------
Confidence 346778888888888888888888888888773 345667777778887 888888888888887632
Q ss_pred CCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 044256 97 KPNVFCYGSLIDGLCK----DRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172 (363)
Q Consensus 97 ~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (363)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------------------~~~a~~~lg~~~ 120 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------------------------------YAEGCASLGGIY 120 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------------CHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------------------------------CccHHHHHHHHH
Confidence 46677777777777 777777777777766431 345666677777
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCCh
Q 044256 173 CL----VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK----NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244 (363)
Q Consensus 173 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (363)
.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +.
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---------------~~ 182 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---------------DS 182 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------CH
T ss_pred HcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------------CH
Confidence 77 777777777777777654 44555556666665 667777766666554331 33
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCC
Q 044256 245 FTCNIFIDGLCK----NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK----FGIFEIASELFNKLSCKN 309 (363)
Q Consensus 245 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~ 309 (363)
..+..+...|.. .+++++|+..+++..+.+ + ...+..+...|.. .+++++|.+.|++..+.+
T Consensus 183 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 183 PGCFNAGNMYHHGEGATKNFKEALARYSKACELE-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 455556666666 666777777666666554 1 4455556666666 666666666666666554
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=2e-15 Score=119.01 Aligned_cols=201 Identities=8% Similarity=-0.035 Sum_probs=99.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
.+..|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------SSAATA 93 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CcchHH
Confidence 44556666666666666677766666666542 3345556666666666666666666666666543 334556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (363)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG----------------------------MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------------------CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHhccHHHHH
Confidence 6666666666666666666666655431 123344555555666666666666
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 044256 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLE 262 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 262 (363)
..++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..+..++...|++++
T Consensus 146 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~~~~~~ 211 (243)
T 2q7f_A 146 PYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-------------PGHADAFYNAGVTYAYKENREK 211 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------cccHHHHHHHHHHHHHccCHHH
Confidence 6666555542 2234455555555555555555555555444332 1233445555555555555555
Q ss_pred HHHHHHHHHhc
Q 044256 263 VMELFPTLEIS 273 (363)
Q Consensus 263 a~~~~~~~~~~ 273 (363)
|...++++.+.
T Consensus 212 A~~~~~~~~~~ 222 (243)
T 2q7f_A 212 ALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 55555555544
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=8.5e-15 Score=113.89 Aligned_cols=217 Identities=10% Similarity=-0.053 Sum_probs=176.7
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 044256 97 KPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVG 176 (363)
Q Consensus 97 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (363)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~~~ 56 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD----------------------------PKNELAWLVRAEIYQYLK 56 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----------------------------ccchHHHHHHHHHHHHcC
Confidence 4557788899999999999999999999988642 234567888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-CChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHH
Q 044256 177 KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN-FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC 255 (363)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 255 (363)
++++|...++.+.+.. +.+..++..+...+... |++++|...++++...+ ..+.+...+..+..++.
T Consensus 57 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~ 124 (225)
T 2vq2_A 57 VNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADP-----------TYPTPYIANLNKGICSA 124 (225)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTST-----------TCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCc-----------CCcchHHHHHHHHHHHH
Confidence 9999999999988763 34677888899999999 99999998887765410 11223567888889999
Q ss_pred hcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHH
Q 044256 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335 (363)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 335 (363)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.......+...+..+...+...|+.++|..
T Consensus 125 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 125 KQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999998775 556888999999999999999999999999876421577788888888899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHH
Q 044256 336 LLLSMEENGCALDVDTFNTLM 356 (363)
Q Consensus 336 ~~~~m~~~g~~p~~~~~~~ll 356 (363)
+++.+.+. .|+......++
T Consensus 204 ~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 204 YEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHh
Confidence 99999873 56666555544
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=6.8e-15 Score=125.51 Aligned_cols=289 Identities=13% Similarity=0.026 Sum_probs=213.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-c----ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccC
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-V----TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 97 (363)
....+..+...+...|++++|+..|+++.+.+ |+ . ..|..+..++...|++++|...+++..+.....+. .+
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 123 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-RL 123 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-ch
Confidence 34456677788899999999999999999873 44 2 46788889999999999999999988764211000 13
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 044256 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177 (363)
Q Consensus 98 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (363)
....++..+...+...|++++|...+++..+.. ... .+.+....++..+...|...|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------------~~~--~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA--------------------RQL--GDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------HHH--TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------------HHh--hchHHHHHHHHHHHHHHHHcCc
Confidence 346778889999999999999999999876531 110 0001224577888889999999
Q ss_pred -----------------HHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHh
Q 044256 178 -----------------VNVAIALFDSMARK----GFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235 (363)
Q Consensus 178 -----------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (363)
++.|...+++..+. +..+ ...++..+...|...|++++|...+++...... ..
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~ 256 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR-----EF 256 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-----hc
Confidence 99999988876542 2111 234777888889999999999999988765431 10
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-----cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC--
Q 044256 236 KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC-----ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-- 308 (363)
Q Consensus 236 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 308 (363)
.........+..+...+...|++++|...+++...... .....++..+...|...|++++|...+++....
T Consensus 257 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 257 --GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 00001133778888999999999999999998875421 122567888999999999999999999988753
Q ss_pred --C-CCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 309 --N-LVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 309 --~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
+ ......++..+..+|...|++++|...+++..+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 1112457788889999999999999999998763
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=1.5e-13 Score=110.32 Aligned_cols=224 Identities=9% Similarity=-0.095 Sum_probs=186.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCc
Q 044256 58 NVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK----DRLVDQTKDLFMEMKDKGINA 133 (363)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 133 (363)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----
Confidence 4566777888888889999999999988873 234677778888888 88888888888877653
Q ss_pred chhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 044256 134 NTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL----VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209 (363)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (363)
+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 72 -----------------------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 72 -----------------------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp -----------------------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred -----------------------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 2 45678888888988 999999999999998875 67888888889998
Q ss_pred ----cCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCcchHHH
Q 044256 210 ----NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK----NGHVLEVMELFPTLEISNCELFVEI 281 (363)
Q Consensus 210 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 281 (363)
.+++++|+..+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~---------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 184 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDLN---------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPG 184 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCCcccCHHHHHHHHHHHHhcC---------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 999999999888876542 45567778888887 899999999999998875 4567
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcC
Q 044256 282 FNSLIRGCCK----FGIFEIASELFNKLSCKNLVADVVAYNILIHALGK----EGQIKKENYLLLSMEENG 344 (363)
Q Consensus 282 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 344 (363)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 185 CFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7888899999 999999999999999875 37778888888988 999999999999999865
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=4.1e-15 Score=117.22 Aligned_cols=200 Identities=14% Similarity=0.051 Sum_probs=99.8
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhh
Q 044256 59 VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLC 138 (363)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 138 (363)
..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------KEDAIPYINFANLLSSVNELERALAFYDKALELD-------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------
Confidence 3445555666666666666666666666543 3445566666666666666666666666655431
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHH
Q 044256 139 KKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMN 218 (363)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 218 (363)
+.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 --------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 88 --------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred --------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 1234455556666666666666666666655542 2244455555555566666666665
Q ss_pred HHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHH
Q 044256 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298 (363)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 298 (363)
.++++.... +.+...+..+...+...|++++|...++++.... +.+..++..+..+|...|++++|
T Consensus 147 ~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 147 YLQRAVELN-------------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHHHHHHC-------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHHhC-------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHH
Confidence 555544332 1234445555555555555555555555555443 33344555555555555555555
Q ss_pred HHHHHHhhhC
Q 044256 299 SELFNKLSCK 308 (363)
Q Consensus 299 ~~~~~~~~~~ 308 (363)
...++++.+.
T Consensus 213 ~~~~~~~~~~ 222 (243)
T 2q7f_A 213 LEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcc
Confidence 5555555543
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.70 E-value=5.7e-15 Score=125.64 Aligned_cols=289 Identities=13% Similarity=0.003 Sum_probs=212.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN----VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP 98 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 98 (363)
....+......+...|++++|+..|+++.+.+ +.+ ..++..+...+...|++++|...+++........+. .+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-QLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-cHH
Confidence 66678888999999999999999999999873 223 246788889999999999999999987654211000 122
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC-
Q 044256 99 NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK- 177 (363)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~- 177 (363)
...++..+...+...|++++|...+++..+... .. ........++..+...|...|+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------------~~--~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR--------------------EL--NDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------HH--TCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------------hc--ccccchHHHHHHHHHHHHHcCCc
Confidence 356788889999999999999999998775310 00 0001123477788888889999
Q ss_pred -------------------HHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHH
Q 044256 178 -------------------VNVAIALFDSMARK----GFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFN 233 (363)
Q Consensus 178 -------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 233 (363)
++.|...+++.... +..| ...++..+...|...|++++|...+++......
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----- 218 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK----- 218 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH-----
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-----
Confidence 99999988876542 2111 234677888889999999999999988765421
Q ss_pred HhHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----Ccc-hHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 234 EMKLCNV-VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN----CEL-FVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 234 ~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
..+. .....++..+...+...|++++|...+++..... ..+ ...++..+...|...|++++|...+++...
T Consensus 219 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 219 ---EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 1110 1123477888889999999999999999887542 111 156788889999999999999999998875
Q ss_pred C----CCC-ccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 308 K----NLV-ADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 308 ~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
. +-. ....++..+..++...|++++|...+++..+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 111 11557788888999999999999999987753
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=7.1e-15 Score=121.57 Aligned_cols=288 Identities=14% Similarity=0.019 Sum_probs=210.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccC
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN-----VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYK 97 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 97 (363)
+...+......+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...+++..+.....+. .+
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 80 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-QL 80 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc-cH
Confidence 34456667788899999999999999999873 44 356778889999999999999999987654210000 12
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcC
Q 044256 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVG 176 (363)
Q Consensus 98 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~ 176 (363)
....++..+...+...|++++|...+++..+... ..+- .....++..+...+...|
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR-----------------------ELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------HTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-----------------------HhcCchHHHHHHHHHHHHHHHcC
Confidence 2356788889999999999999999998765311 0000 011347777888888889
Q ss_pred C--------------------HHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHH
Q 044256 177 K--------------------VNVAIALFDSMARK----GFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKI 231 (363)
Q Consensus 177 ~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (363)
+ ++.|...+++.... +..+ ...++..+...+...|++++|...+++......
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--- 214 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--- 214 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---
Confidence 9 99999988876542 2111 234677788889999999999999988765421
Q ss_pred HHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----Cc-chHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 044256 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN----CE-LFVEIFNSLIRGCCKFGIFEIASELFNKLS 306 (363)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 306 (363)
.. ........++..+...+...|++++|...+++..... .+ ....++..+...+...|++++|...+++..
T Consensus 215 --~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 215 --EF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp --HH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --hc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 10 0001123477888889999999999999999886542 11 125677888999999999999999999886
Q ss_pred hC----CC-CccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 307 CK----NL-VADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 307 ~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.. +. .....++..+...+.+.|++++|...+++..+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 53 11 112457778889999999999999999999874
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=1.1e-14 Score=124.25 Aligned_cols=276 Identities=13% Similarity=0.011 Sum_probs=202.7
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCcccHHHHHHHHHh
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLND----VTFNSLIKGFCMEGNIRDASQLVKKMATF----GC-RPNVTTCDTLITGLRR 71 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~ 71 (363)
.|++++|+..|+.+.+. .|.+. .+|..+...+...|++++|+..|++..+. +- +....++..+...+..
T Consensus 61 ~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 138 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV 138 (411)
T ss_dssp TTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 47899999999999987 55344 57889999999999999999999988654 11 1234567888899999
Q ss_pred cCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHcCCCcc
Q 044256 72 TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL-----------------VDQTKDLFMEMKDKGINAN 134 (363)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~~~~~~ 134 (363)
.|++++|...+++..+.....+. .+....++..+...+...|+ +++|...+++..+.
T Consensus 139 ~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----- 212 (411)
T 4a1s_A 139 MGRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL----- 212 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH-----
Confidence 99999999999988775211000 12235578888899999999 77777776665432
Q ss_pred hhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHh
Q 044256 135 TLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM-PD----VFSYSVLINGYCK 209 (363)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~ 209 (363)
..... ..+....++..+...+...|++++|...+++..+.... ++ ..++..+...|..
T Consensus 213 ---------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 213 ---------------MRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275 (411)
T ss_dssp ---------------HHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred ---------------HHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 11110 00112457788889999999999999999987654100 11 2377888889999
Q ss_pred cCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----CcchHHHHHH
Q 044256 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-----CELFVEIFNS 284 (363)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 284 (363)
.|++++|...+++...... .. ........++..+...+...|++++|...+++..... ......++..
T Consensus 276 ~g~~~~A~~~~~~al~~~~-----~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 348 (411)
T 4a1s_A 276 LGQFEDAAEHYKRTLALAV-----EL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWS 348 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHH-----HT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH-----Hc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999999988765431 11 0001124577888899999999999999999987542 1122457888
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhC
Q 044256 285 LIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 285 li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
+...|...|++++|...+++..+.
T Consensus 349 la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 349 LGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999999999998865
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=5.8e-15 Score=125.60 Aligned_cols=297 Identities=13% Similarity=0.013 Sum_probs=213.8
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CcccHHHHHHHHHh
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLN----DVTFNSLIKGFCMEGNIRDASQLVKKMATF----GCRP-NVTTCDTLITGLRR 71 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~ 71 (363)
.|++++|...|+.+.+. .|.+ ..+|..+...+...|++++|...+++.... +-.| ...++..+...+..
T Consensus 22 ~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 99 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 99 (406)
T ss_dssp TTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 48899999999999987 5534 367889999999999999999999987543 1111 24467888899999
Q ss_pred cCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHcCC
Q 044256 72 TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL--------------------VDQTKDLFMEMKDKGI 131 (363)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~~~ 131 (363)
.|++++|...+++..+.....+. ......++..+...+...|+ +++|...+++..+.
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~-- 176 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL-- 176 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH--
Confidence 99999999999988775311000 01114478888888999999 77777777665532
Q ss_pred CcchhhhccCChHHHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-cHhHHHHHHH
Q 044256 132 NANTLLCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK----GFMP-DVFSYSVLIN 205 (363)
Q Consensus 132 ~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 205 (363)
.. ..+. +....++..+...+...|++++|...+++..+. +..+ ...++..+..
T Consensus 177 ------------------~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 235 (406)
T 3sf4_A 177 ------------------VT---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 235 (406)
T ss_dssp ------------------HH---HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------HH---hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 11 1111 112457888889999999999999999987654 1111 1237788888
Q ss_pred HHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-----cchH
Q 044256 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC-----ELFV 279 (363)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~ 279 (363)
.|...|++++|...+++...... ..+..+ ...++..+...+...|++++|...+++...... ....
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 307 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLAR--------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 307 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHH--------hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999988765331 111111 145778888999999999999999999875421 1125
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhC----CC-CccHHHHHHHHHHHHccCChh
Q 044256 280 EIFNSLIRGCCKFGIFEIASELFNKLSCK----NL-VADVVAYNILIHALGKEGQIK 331 (363)
Q Consensus 280 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~ 331 (363)
.++..+...|...|++++|...+++..+. +. .....++..+...+...|+..
T Consensus 308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 308 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 67888999999999999999999987643 21 123456777777887777663
No 58
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.65 E-value=1.4e-12 Score=121.20 Aligned_cols=312 Identities=13% Similarity=0.131 Sum_probs=182.8
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|.+++|..+|++.. . .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|.+.
T Consensus 1063 glyEEAf~IYkKa~----~--~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD----V--NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCHHHHHHHHHHcC----C--HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 56677777776652 1 2233333332 4556666666665442 344566666666666666666666
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc------hhhhccCChHHHHHHHHHHHH
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN------TLLCKKTKLVEANRLLELMMQ 155 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~ 155 (363)
|.+. .|...|..++.++.+.|++++|.+.|....+....+. ..+.+.+++++...++ +
T Consensus 1128 YiKA------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1128 YIKA------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHhc------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 6332 2345566666666666666666666665554432211 1444555555433222 1
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHH-----
Q 044256 156 RGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKK----- 230 (363)
Q Consensus 156 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----- 230 (363)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++......+.
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 1259 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHH
Confidence 234445555666666666666666666653 246666666666666666666665553221100
Q ss_pred H-----HHHhHhc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhc--CChHHHHHH
Q 044256 231 I-----FNEMKLC--NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF--GIFEIASEL 301 (363)
Q Consensus 231 ~-----~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~ 301 (363)
. |+..... ++..++..+..++..|.+.|.+++|+.+++...... +-+...|+-|...|++. ++..++.++
T Consensus 1260 cve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 0 1111111 234566678889999999999999999999888766 56677887777777764 345555555
Q ss_pred HHHhhhCCCCc------cHHHHHHHHHHHHccCChhHHHHH-------------HHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 302 FNKLSCKNLVA------DVVAYNILIHALGKEGQIKKENYL-------------LLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 302 ~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~-------------~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
|..-.. ++| +...|..++..|.+.|+++.|... |++.+. ...|...|...+.-|..
T Consensus 1339 f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1339 FWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHh
Confidence 554322 222 567899999999999999999832 222222 24456666666665543
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.65 E-value=2.8e-14 Score=118.02 Aligned_cols=275 Identities=13% Similarity=0.024 Sum_probs=200.0
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CcccHHHHHHHHHh
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLN----DVTFNSLIKGFCMEGNIRDASQLVKKMATF----GCRP-NVTTCDTLITGLRR 71 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~ 71 (363)
.|++++|...|+.+.+. .|.+ ..++..+...+...|++++|...+++.... +..| ...++..+...+..
T Consensus 18 ~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp TTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 48899999999999987 5534 467889999999999999999999987643 1111 24567888899999
Q ss_pred cCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHcCC
Q 044256 72 TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL--------------------VDQTKDLFMEMKDKGI 131 (363)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~~~ 131 (363)
.|++++|...+++..+.....+. ......++..+...+...|+ +++|...+++..+.
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~-- 172 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL-- 172 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH--
Confidence 99999999999998765311000 01114478888888988888 77777777665431
Q ss_pred CcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CcHhHHHHHHHH
Q 044256 132 NANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK----GFM-PDVFSYSVLING 206 (363)
Q Consensus 132 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~ 206 (363)
..... ..+....++..+...+...|++++|...+++..+. +.. ....++..+...
T Consensus 173 ------------------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 232 (338)
T 3ro2_A 173 ------------------VTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 232 (338)
T ss_dssp ------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------------HHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 11110 00112457788889999999999999999987653 111 112377788888
Q ss_pred HHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----CcchHH
Q 044256 207 YCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV-PETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-----CELFVE 280 (363)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~ 280 (363)
+...|++++|...+++...... ..+.. ....++..+...+...|++++|...+++..... ......
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTLLLAR--------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHH--------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 9999999999999988764321 11111 124567788889999999999999999886542 112245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 281 IFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 281 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
++..+...|...|++++|...+++..+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7788999999999999999999998865
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=6.7e-13 Score=108.46 Aligned_cols=236 Identities=9% Similarity=-0.015 Sum_probs=177.2
Q ss_pred chhhHHHHHHHHHhc----CCH----HHHHHHHHHHHhcCCCCCcccHHHHHHHHH-------hcCCh-------hHHHH
Q 044256 23 NDVTFNSLIKGFCME----GNI----RDASQLVKKMATFGCRPNVTTCDTLITGLR-------RTGNM-------NLTLK 80 (363)
Q Consensus 23 ~~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~ 80 (363)
+...|...+....+. ++. ++|..+|++.+... +.+...|..++..+. +.|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 445666666655443 233 78889999998763 456678888877775 35776 89999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCC
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNP 160 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (363)
+|++.++.- .+.+...|..++..+.+.|++++|..+|++..+. .|
T Consensus 86 ~~~rAl~~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------------------------~p 130 (308)
T 2ond_A 86 IYERAISTL------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----------------------------ED 130 (308)
T ss_dssp HHHHHHTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----------------------------SS
T ss_pred HHHHHHHHh------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------------------------cc
Confidence 999999842 1446678999999999999999999999998864 23
Q ss_pred c-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH-HhcCChhHHHHHHHHHHHhhHHHHHHHhHh
Q 044256 161 V-IF-TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGY-CKNFNVEEAMNVSREMILNGFKKIFNEMKL 237 (363)
Q Consensus 161 ~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (363)
+ .. +|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..+|++.++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---------- 199 (308)
T 2ond_A 131 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---------- 199 (308)
T ss_dssp SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH----------
T ss_pred cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------
Confidence 2 33 78888899999999999999999998763 23344444333322 23689999998888877654
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-Ccc--hHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN-CEL--FVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 238 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
+.+...|..++..+.+.|++++|..+|++..... ++| ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 200 ---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 200 ---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp ---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2356778888888888899999999999988763 344 3567888888888889999999998888765
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=9.7e-14 Score=104.38 Aligned_cols=174 Identities=11% Similarity=0.052 Sum_probs=150.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCC
Q 044256 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240 (363)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 240 (363)
+..+|..+...|...|++++|+..|++..+.. +-+..++..+..+|.+.|++++|...+.......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------------- 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------------- 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------
Confidence 56789999999999999999999999998874 3367788999999999999999999888876654
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHH
Q 044256 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320 (363)
Q Consensus 241 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (363)
+.+...+..+...+...++++.|...+.+..... +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l 147 (184)
T 3vtx_A 70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSI 147 (184)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHH
Confidence 2355677777888899999999999999998875 6678899999999999999999999999999875 5578899999
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCHHHH
Q 044256 321 IHALGKEGQIKKENYLLLSMEENGCALDVDTF 352 (363)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 352 (363)
..++.+.|++++|.+.|++.++ +.|+...|
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--CCccCHHH
Confidence 9999999999999999999998 56765443
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=6.6e-13 Score=108.52 Aligned_cols=218 Identities=6% Similarity=-0.092 Sum_probs=171.3
Q ss_pred hHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCcchhhhccC
Q 044256 76 NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-------DRLV-------DQTKDLFMEMKDKGINANTLLCKKT 141 (363)
Q Consensus 76 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~ 141 (363)
++|..+|++++... +.+...|..++..+.. .|++ ++|..+|++..+.
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~------------ 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------------ 93 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH------------
Confidence 68889999999864 6678889888887764 3554 5555555555431
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-Hh-HHHHHHHHHHhcCChhHHHHH
Q 044256 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD-VF-SYSVLINGYCKNFNVEEAMNV 219 (363)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~ 219 (363)
.. +-+...|..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+
T Consensus 94 --------------~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 94 --------------LL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp --------------TT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred --------------hC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 11 234568999999999999999999999999985 443 33 799999999999999999988
Q ss_pred HHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHH
Q 044256 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLC-KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIA 298 (363)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 298 (363)
|++.++.. +++...|........ ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|
T Consensus 157 ~~~a~~~~-------------p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A 222 (308)
T 2ond_A 157 FKKAREDA-------------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HHHHHTST-------------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHhcC-------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 88876543 234445544433322 3699999999999998774 56788999999999999999999
Q ss_pred HHHHHHhhhCC-CCc--cHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 299 SELFNKLSCKN-LVA--DVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 299 ~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
..+|++..... ++| ....|..++....+.|+.++|..+++++.+.
T Consensus 223 ~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 223 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999863 354 4778999999999999999999999999884
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=1.4e-13 Score=116.15 Aligned_cols=308 Identities=7% Similarity=-0.104 Sum_probs=211.2
Q ss_pred ChhhhhHHHHHHHHHHcC--CCC-CchhhHHHHHHHH--HhcCCHHHHH-----------HHHHHHHhcCCCCCcccH--
Q 044256 1 TSKVLGALMAFGSFIRRC--YRP-LNDVTFNSLIKGF--CMEGNIRDAS-----------QLVKKMATFGCRPNVTTC-- 62 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~~li~~~--~~~~~~~~a~-----------~~~~~m~~~~~~~~~~~~-- 62 (363)
.+++++|..+++.+.+.- ..+ .+...|..++..- ...++++.+. +.++.+... +++...+
T Consensus 25 ~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~~l~ 102 (383)
T 3ulq_A 25 RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTGLLE 102 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchhHHH
Confidence 468899999999987642 112 1344445554432 2234445555 677776543 1121222
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhh
Q 044256 63 ----DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP-NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLL 137 (363)
Q Consensus 63 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 137 (363)
......+...|++++|...|++..+.....+ -++ ...++..+..++...|+++.|...+++..+.....
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---- 176 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK--DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH---- 176 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----
Confidence 2256677889999999999999987531100 011 35688899999999999999999999877531100
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCC
Q 044256 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK----GFMP-DVFSYSVLINGYCKNFN 212 (363)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~ 212 (363)
++. .+....+++.+...|...|++++|...+++..+. +..+ ...++..+...|...|+
T Consensus 177 ---~~~--------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 177 ---EAY--------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp ---STT--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---ccc--------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 000 0112457888899999999999999999987654 1111 12477888899999999
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----CcchHHHHHHHHH
Q 044256 213 VEEAMNVSREMILNGFKKIFNEMKLCNV-VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN----CELFVEIFNSLIR 287 (363)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~ 287 (363)
+++|...+++..... ...+. +....++..+...+...|++++|...+++..... -+.....+..+..
T Consensus 240 ~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVF--------EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311 (383)
T ss_dssp HHHHHHHHHHHHHHH--------HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998876421 12222 2335678889999999999999999999987542 1222334677888
Q ss_pred HHHhcCC---hHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 288 GCCKFGI---FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 288 ~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.+...|+ +++|..++++.... +.....+..+...|...|++++|...+++..+.
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESKMLY--ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCcCH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8889999 77788887776321 233456778888999999999999999998763
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=3.8e-14 Score=122.77 Aligned_cols=216 Identities=10% Similarity=-0.084 Sum_probs=179.1
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNI-RDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
+++++++.++..... .|.+...|..+...+...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|...
T Consensus 83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 466777778776664 566889999999999999999 99999999999874 34577899999999999999999999
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHH
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKD---------RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLEL 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 152 (363)
|++..+ ..|+...+..+..++... |++++|...|++..+..
T Consensus 160 ~~~al~--------~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------- 209 (474)
T 4abn_A 160 FSGALT--------HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---------------------- 209 (474)
T ss_dssp HHHHHT--------TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHh--------hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC----------------------
Confidence 999998 457778899999999998 88888888888877642
Q ss_pred HHHcCCCCchhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCC--CcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 044256 153 MMQRGLNPVIFTYTPLLNGYCLV--------GKVNVAIALFDSMARKGFM--PDVFSYSVLINGYCKNFNVEEAMNVSRE 222 (363)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (363)
+.+...|..+..+|... |++++|+..|++..+.... .+...|..+..+|...|++++|...+++
T Consensus 210 ------p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 210 ------VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33467888888888888 9999999999999886310 3778899999999999999999999998
Q ss_pred HHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044256 223 MILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTL 270 (363)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 270 (363)
..+.. +.+...+..+..++...|++++|++.+.++
T Consensus 284 al~l~-------------p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 284 AAALD-------------PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHC-------------TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhC-------------CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 87654 234567888888888899999988866554
No 65
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=2.5e-13 Score=116.93 Aligned_cols=301 Identities=11% Similarity=-0.023 Sum_probs=131.7
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-----
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNI---RDASQLVKKMATFGCRPNVTTCDTLITGLRRTG----- 73 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~----- 73 (363)
|++++|.+.|+...+.| ++.++..+...|...|+. ++|+.+|++..+. +...+..|...+...+
T Consensus 17 g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHH
T ss_pred CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCc
Confidence 78999999999988763 445666777777778888 8999999888753 5566777777555554
Q ss_pred ChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCcch-----hhhccCChHH
Q 044256 74 NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD---QTKDLFMEMKDKGINANT-----LLCKKTKLVE 145 (363)
Q Consensus 74 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 145 (363)
+.++|...|++..+.+ . ...+..|...|...+..+ .+.+.+......+..... .+...+.+++
T Consensus 89 ~~~~A~~~~~~Aa~~g-------~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 89 EHHEAESLLKKAFANG-------E--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HHHHHHHHHHHHHHTT-------C--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CHHHHHHHHHHHHHCC-------C--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 6788999999888755 2 225556666665544322 233333333333321111 2223332222
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc----CChhHHHH
Q 044256 146 ANRLLELMMQRGLNPVIFTYTPLLNGYCLVG---KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN----FNVEEAMN 218 (363)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~ 218 (363)
+......+.+.-...+...+..|...|...| +.++|+..|+...+.|. ++...+..+...|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 2222111111111112224555555555555 55555555555555542 2333333344444332 45555555
Q ss_pred HHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcC--
Q 044256 219 VSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDG-L--CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG-- 293 (363)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-- 293 (363)
.|++.. . .+...+..+... + ...+++++|+..|++..+.| ++..+..|...|. .|
T Consensus 239 ~~~~aa-~---------------g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 239 LLEKIA-P---------------GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp HHHHHG-G---------------GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred HHHHHc-C---------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 544433 1 122333333333 2 23455555555555555443 2333444444443 23
Q ss_pred ---ChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcC
Q 044256 294 ---IFEIASELFNKLSCKNLVADVVAYNILIHALGK----EGQIKKENYLLLSMEENG 344 (363)
Q Consensus 294 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 344 (363)
++++|.+.|++.. .| ++..+..+...|.. ..++++|..+|++..+.|
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 5555555555544 22 33444444444433 224555555555544433
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=2.7e-14 Score=116.87 Aligned_cols=262 Identities=14% Similarity=0.030 Sum_probs=165.2
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCC
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF-------GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDF 92 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 92 (363)
.|.+..++..+...+...|++++|..+|+++.+. ..+....++..+..++...|++++|...++++.......
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3446778999999999999999999999998873 223345578889999999999999999999988742000
Q ss_pred -CCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 044256 93 -GGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNG 171 (363)
Q Consensus 93 -~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (363)
+...+....++..+...+...|++++|...+++..+. .........+.....+..+...
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------------------~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI--------------------REKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------------------HHHHHCTTCHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--------------------HHHhcCCCChHHHHHHHHHHHH
Confidence 0001334678889999999999999999999988753 1111111112235678888999
Q ss_pred HHhcCCHHHHHHHHHHHHHc------CCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCCh
Q 044256 172 YCLVGKVNVAIALFDSMARK------GFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244 (363)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (363)
+...|++++|..+++++.+. +..| ...++..+...|...|++++|...++++.......-+. ...+..
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~ 237 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG-----SVDDEN 237 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-----CCCcch
Confidence 99999999999999988764 2223 34577888899999999999999999887543111000 011111
Q ss_pred H-------HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 245 F-------TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 245 ~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
. .+..+...+...+.+.++...++...... +.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11112222223334444444454444332 33445555666666666666666666665543
No 67
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=4.7e-12 Score=117.78 Aligned_cols=251 Identities=10% Similarity=0.102 Sum_probs=179.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHH
Q 044256 27 FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSL 106 (363)
Q Consensus 27 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (363)
...+...+...|.+++|..+|++.. . .....+.++. ..+++++|.++.++.. +..+|..+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aervn------------~p~vWsqL 1111 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAERCN------------EPAVWSQL 1111 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHhcC------------CHHHHHHH
Confidence 3447788899999999999999963 1 1122233332 7789999999988553 26789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcch------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 044256 107 IDGLCKDRLVDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180 (363)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 180 (363)
..++...|++++|.+.|.+.. .++. .+.+.|++++|.+++...++.. ++....+.++.+|++.++++.
T Consensus 1112 AKAql~~G~~kEAIdsYiKAd----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHH
Confidence 999999999999999996641 2222 7789999999999999888765 343344569999999999886
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCH
Q 044256 181 AIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260 (363)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 260 (363)
...+. + .++...|..+...|...|++++|..+|..+ ..|..+...+.+.|++
T Consensus 1186 le~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------------------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1186 LEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------------------hHHHHHHHHHHHhCCH
Confidence 44442 2 346677778999999999999999887753 2688888888888999
Q ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHH
Q 044256 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSM 340 (363)
Q Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 340 (363)
++|.+.+++.. +..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+++++..
T Consensus 1238 q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1238 QAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99888888763 3456665666666666666555544432 224445555566666666666666666555
Q ss_pred HH
Q 044256 341 EE 342 (363)
Q Consensus 341 ~~ 342 (363)
+.
T Consensus 1307 L~ 1308 (1630)
T 1xi4_A 1307 LG 1308 (1630)
T ss_pred hc
Confidence 43
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=8.1e-14 Score=120.73 Aligned_cols=218 Identities=11% Similarity=-0.085 Sum_probs=177.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCh-hHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHH
Q 044256 39 NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM-NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD 117 (363)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 117 (363)
.+++++..++...... +.+...+..+..++...|++ ++|+..|++..+.. +.+...|..+..+|.+.|+++
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-------PELVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHH
Confidence 3566777777666542 34667788888899999999 99999999998864 456788999999999999999
Q ss_pred HHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc---------CCHHHHHHHHHHH
Q 044256 118 QTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV---------GKVNVAIALFDSM 188 (363)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~ 188 (363)
+|...|++..+. .|+...+..+...+... |++++|+..|++.
T Consensus 155 ~A~~~~~~al~~-----------------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a 205 (474)
T 4abn_A 155 SAHTCFSGALTH-----------------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205 (474)
T ss_dssp HHHHHHHHHHTT-----------------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-----------------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence 999999888764 45567888889999999 9999999999999
Q ss_pred HHcCCCCcHhHHHHHHHHHHhc--------CChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCH
Q 044256 189 ARKGFMPDVFSYSVLINGYCKN--------FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHV 260 (363)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 260 (363)
.+.. +.+...|..+..+|... |++++|+..+++..+... ....+...|..+..+|...|++
T Consensus 206 l~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~~~~lg~~~~~~g~~ 274 (474)
T 4abn_A 206 VQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR----------KASSNPDLHLNRATLHKYEESY 274 (474)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG----------GGGGCHHHHHHHHHHHHHTTCH
T ss_pred HHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC----------CcccCHHHHHHHHHHHHHcCCH
Confidence 8874 33678888999999888 999999999988876530 0003677889999999999999
Q ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044256 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305 (363)
Q Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 305 (363)
++|.+.|++..+.. +.+...+..+..++...|++++|.+.+.++
T Consensus 275 ~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 275 GEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999998875 666778888999999999999988766544
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=3.2e-13 Score=114.08 Aligned_cols=245 Identities=7% Similarity=-0.063 Sum_probs=180.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-CCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHH
Q 044256 30 LIKGFCMEGNIRDASQLVKKMATFG-CRPN----VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYG 104 (363)
Q Consensus 30 li~~~~~~~~~~~a~~~~~~m~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (363)
....+...|++++|+..|++..+.- -.++ ..++..+..++...|+++.|...+++..+.....+...+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 6667788999999999999987641 0122 3578889999999999999999999988754221110112245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcCCHHHHHH
Q 044256 105 SLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGL-NPVIFTYTPLLNGYCLVGKVNVAIA 183 (363)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~ 183 (363)
.+..+|...|++++|...+++..+... +.+- +....++..+...|...|++++|+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~-----------------------~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 245 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAE-----------------------AEKQPQLMGRTLYNIGLCKNSQSQYEDAIP 245 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHH-----------------------HcCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 899999999999999999998875310 0110 1113478889999999999999999
Q ss_pred HHHHHHHc----CC-CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcC
Q 044256 184 LFDSMARK----GF-MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258 (363)
Q Consensus 184 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 258 (363)
.+++..+. +. +....++..+...|.+.|++++|...+++..... . ..+-+.....+..+...+...|
T Consensus 246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~---~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS-----Q---KAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----H---HHTCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----H---HcCCHHHHHHHHHHHHHHhCCC
Confidence 99988762 23 3345678889999999999999999998876532 1 1111112233566778888888
Q ss_pred C---HHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 259 H---VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 259 ~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
+ .++|+.++++... .+.....+..+...|...|++++|...+++...
T Consensus 318 ~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8 7788888877622 133456778899999999999999999998865
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=4.3e-13 Score=109.65 Aligned_cols=222 Identities=13% Similarity=-0.006 Sum_probs=168.9
Q ss_pred cCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 044256 96 YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLV 175 (363)
Q Consensus 96 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (363)
.+.+..++..+...+...|++++|..+++++.+. .........+....++..+...|...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------------------~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALED--------------------LEKTSGHDHPDVATMLNILALVYRDQ 82 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------HHHHHCSSSHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------HHHHcCCCCHHHHHHHHHHHHHHHHC
Confidence 3445778899999999999999999999988752 11111011123456788899999999
Q ss_pred CCHHHHHHHHHHHHHc------CC-CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHH
Q 044256 176 GKVNVAIALFDSMARK------GF-MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248 (363)
Q Consensus 176 ~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (363)
|++++|...+++.... +. +....++..+...|...|++++|...++++.... ........+.....+.
T Consensus 83 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-----EKVLGKDHPDVAKQLN 157 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-----HHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-----HHhcCCCChHHHHHHH
Confidence 9999999999988764 22 2245678888899999999999999998876432 2211111123455788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc------c-CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-------------
Q 044256 249 IFIDGLCKNGHVLEVMELFPTLEIS------N-CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK------------- 308 (363)
Q Consensus 249 ~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------- 308 (363)
.+...+...|++++|...++++... + .+....++..+...|...|++++|...++++...
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 8889999999999999999998765 1 2344567889999999999999999999988752
Q ss_pred -----------------------------------CCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 309 -----------------------------------NLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 309 -----------------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
..+.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1133456788889999999999999999999876
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=7.9e-13 Score=99.36 Aligned_cols=168 Identities=14% Similarity=0.011 Sum_probs=144.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
++.+|..+...+.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|...+....... +.+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-------TTSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------chhHHH
Confidence 67899999999999999999999999999874 4467788999999999999999999999998864 556778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (363)
+..+...+...++++.|...+.+..+.. +.+...+..+...+.+.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~----------------------------~~~~~~~~~lg~~~~~~g~~~~A~ 127 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALN----------------------------TVYADAYYKLGLVYDSMGEHDKAI 127 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------ccchHHHHHHHHHHHHhCCchhHH
Confidence 8888888999999999999998887642 334667888899999999999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 044256 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (363)
..|++..+.. +.+..+|..+..+|.+.|++++|...|++.++.+
T Consensus 128 ~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 128 EAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 9999988874 3467788999999999999999999999887654
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=5.6e-12 Score=108.51 Aligned_cols=297 Identities=12% Similarity=-0.046 Sum_probs=174.8
Q ss_pred hhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhH-
Q 044256 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEG-----NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL- 77 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~- 77 (363)
+++|...|+...+. ++..+..+...+...+ ++++|+..|++..+.| +...+..|...|...+....
T Consensus 54 ~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~ 125 (452)
T 3e4b_A 54 IKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPN 125 (452)
T ss_dssp ----------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTT
T ss_pred HHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCC
Confidence 38888888888753 5567777777555555 7889999999988865 33367777777776655433
Q ss_pred --HHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCcch------hhhccC---ChH
Q 044256 78 --TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG--INANT------LLCKKT---KLV 144 (363)
Q Consensus 78 --a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~~---~~~ 144 (363)
+.+.+...... .+...+..+...|...+.++.+......+.+.- ..|.. .+...| +.+
T Consensus 126 ~~a~~~~~~a~~~---------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~ 196 (452)
T 3e4b_A 126 VNAQQQISQWQAA---------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQA 196 (452)
T ss_dssp CCHHHHHHHHHHH---------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHH
Confidence 44444444332 235566667777777765444443322222211 12222 444566 778
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH-H--HhcCChhHHH
Q 044256 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLV----GKVNVAIALFDSMARKGFMPDVFSYSVLING-Y--CKNFNVEEAM 217 (363)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~ 217 (363)
+|...|++..+.| +++...+..+...|... +++++|..+|+... .| ++..+..+... + ...+++++|+
T Consensus 197 ~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 197 ELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 8888888887776 34444445666666554 67888888888776 33 44455555554 3 4577888888
Q ss_pred HHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHh-
Q 044256 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG-----HVLEVMELFPTLEISNCELFVEIFNSLIRGCCK- 291 (363)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 291 (363)
..|++....+ +...+..+...|. .| ++++|+..|++.. .+ ++..+..|...|..
T Consensus 272 ~~~~~Aa~~g---------------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 272 KYLDNGRAAD---------------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRG 331 (452)
T ss_dssp HHHHHHHHTT---------------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCC---------------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCC
Confidence 7777765432 4555666666665 44 7888888888777 43 45566666666655
Q ss_pred ---cCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCC
Q 044256 292 ---FGIFEIASELFNKLSCKNLVADVVAYNILIHALGK----EGQIKKENYLLLSMEENGC 345 (363)
Q Consensus 292 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 345 (363)
..++++|...|++..+.| +......+...|.. ..++++|..+|+...+.|.
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 347888888888887765 33444455555543 4577788888887777664
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=3.6e-11 Score=101.06 Aligned_cols=282 Identities=13% Similarity=0.026 Sum_probs=194.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-----cHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCch
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT-----TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNV 100 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
.+......+...|++++|...+++..... +++.. +++.+...+...|++++|...+++........+. .....
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~ 93 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-WHYAL 93 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-HHHHH
Confidence 34455566778999999999999988764 22221 4566777888899999999999998774311000 00112
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCC--C-chhhHHHHHHHHHhcCC
Q 044256 101 FCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLN--P-VIFTYTPLLNGYCLVGK 177 (363)
Q Consensus 101 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 177 (363)
.++..+...+...|++++|...+++..+.. ...+.+ | ....+..+...+...|+
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~-----------------------~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLI-----------------------NEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------HHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------------------HHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 345677788899999999999998876531 111111 2 23456678888999999
Q ss_pred HHHHHHHHHHHHHcCCC--C--cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHH----H
Q 044256 178 VNVAIALFDSMARKGFM--P--DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN----I 249 (363)
Q Consensus 178 ~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 249 (363)
+++|...+++....... + ...++..+...+...|++++|...+++..... ...+. + ..... .
T Consensus 151 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~--------~~~~~-~-~~~~~~~~~~ 220 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL--------GNGKY-H-SDWISNANKV 220 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------TTSCC-C-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------hccCc-c-hhHHHHHHHH
Confidence 99999999988764221 1 23467778888899999999998888765431 11111 1 11111 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCc---chHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCccH-HHHHHHH
Q 044256 250 FIDGLCKNGHVLEVMELFPTLEISNCE---LFVEIFNSLIRGCCKFGIFEIASELFNKLSCK----NLVADV-VAYNILI 321 (363)
Q Consensus 250 ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li 321 (363)
.+..+...|++++|...+++....... .....+..+...+...|++++|...+++.... +..++. ..+..+.
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 334477899999999999998754321 11335677888999999999999999987643 222233 3666677
Q ss_pred HHHHccCChhHHHHHHHHHHH
Q 044256 322 HALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.++...|++++|...+++...
T Consensus 301 ~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 888999999999999998765
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=2.3e-11 Score=102.43 Aligned_cols=306 Identities=8% Similarity=-0.076 Sum_probs=208.4
Q ss_pred CCCchhhHHHHHHHH--HhcCCHHHHHHHHHHHHhc--CCCCCcc--cHHHHHHH--HHhcCChhHHH---------HHH
Q 044256 20 RPLNDVTFNSLIKGF--CMEGNIRDASQLVKKMATF--GCRPNVT--TCDTLITG--LRRTGNMNLTL---------KLH 82 (363)
Q Consensus 20 ~p~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--~~~~~~~--~~~~l~~~--~~~~~~~~~a~---------~~~ 82 (363)
.| +..+-+.|-.-| .+.+++++|..+++++.+. .+..|.. .|-.++.. ..-.+...... ..+
T Consensus 7 ~~-~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 7 IP-SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp BC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cc-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 55 666666666666 8899999999999988654 2223322 23333322 11122333333 666
Q ss_pred HHHHhccCCCCCccCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cch------------hhhccCChHH
Q 044256 83 QEMVNGMGDFGGIYKPN----VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN-ANT------------LLCKKTKLVE 145 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~------------~~~~~~~~~~ 145 (363)
+.+.... .+.+ ...+......+...|++++|...|++..+.... ++. .+...|+++.
T Consensus 86 ~~i~~~~------~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~ 159 (378)
T 3q15_A 86 ETIETPQ------KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHV 159 (378)
T ss_dssp HHHHGGG------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccC------CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHH
Confidence 6665422 1111 112334455678899999999999998864221 111 6778999999
Q ss_pred HHHHHHHHHHcC--C---CC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCChh
Q 044256 146 ANRLLELMMQRG--L---NP-VIFTYTPLLNGYCLVGKVNVAIALFDSMARK----GFMP-DVFSYSVLINGYCKNFNVE 214 (363)
Q Consensus 146 a~~~~~~~~~~~--~---~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~ 214 (363)
|...+.+..+.. . .+ ...+++.+...|...|++++|...|++..+. +..+ ...++..+...|...|+++
T Consensus 160 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 160 SMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 999998877531 1 11 2457788999999999999999999887653 2111 2346778888999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----CcchHHHHHHHHHHHH
Q 044256 215 EAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN----CELFVEIFNSLIRGCC 290 (363)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~ 290 (363)
+|...+++..... .. .+.+....++..+...+.+.|++++|...+++..... -+.....+..+...+.
T Consensus 240 ~A~~~~~~al~~~-----~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 240 MAVEHFQKAAKVS-----RE---KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp HHHHHHHHHHHHH-----HH---HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-----Hh---hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999998876521 11 1222336678888999999999999999999987652 2333445677777788
Q ss_pred hcCC---hHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 291 KFGI---FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 291 ~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
..++ +.+|...+++... .+.....+..+...|...|++++|...|++..+
T Consensus 312 ~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888 7778777776322 122345667788899999999999999999875
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=2.3e-11 Score=102.21 Aligned_cols=275 Identities=9% Similarity=-0.118 Sum_probs=187.6
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchh----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCc----ccHHHHHHHHHh
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDV----TFNSLIKGFCMEGNIRDASQLVKKMATFGC-RPNV----TTCDTLITGLRR 71 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l~~~~~~ 71 (363)
.|++++|...++....... +.+.. +++.+...+...|++++|...+++...... .++. .++..+...+..
T Consensus 27 ~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 4789999999999887632 21222 567777888999999999999998875411 1122 235667788899
Q ss_pred cCChhHHHHHHHHHHhccCCCCCccCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHH
Q 044256 72 TGNMNLTLKLHQEMVNGMGDFGGIYKP-NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLL 150 (363)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 150 (363)
.|++++|...+++........+....| ....+..+...+...|++++|...+++........
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------- 168 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY----------------- 168 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-----------------
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc-----------------
Confidence 999999999999887653211100012 24466778888999999999999999987643211
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HhHHH-----HHHHHHHhcCChhHHHHHHHHHH
Q 044256 151 ELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD-VFSYS-----VLINGYCKNFNVEEAMNVSREMI 224 (363)
Q Consensus 151 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~ 224 (363)
+.+....++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++..
T Consensus 169 ------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 169 ------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp ------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 1011234677788889999999999999998865421111 11121 23344778999999987776653
Q ss_pred HhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----cCcchH-HHHHHHHHHHHhcCChHHHH
Q 044256 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS----NCELFV-EIFNSLIRGCCKFGIFEIAS 299 (363)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~ 299 (363)
... ..........+..+...+...|++++|...++..... +.+++. .++..+..++...|+.++|.
T Consensus 243 ~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 243 KPE---------FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp CCC---------CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCC---------CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 211 0000011224567778899999999999999987643 222233 36677788899999999999
Q ss_pred HHHHHhhhC
Q 044256 300 ELFNKLSCK 308 (363)
Q Consensus 300 ~~~~~~~~~ 308 (363)
..+++....
T Consensus 314 ~~l~~al~~ 322 (373)
T 1hz4_A 314 RVLLDALKL 322 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=7.1e-12 Score=97.64 Aligned_cols=195 Identities=12% Similarity=-0.046 Sum_probs=87.3
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHH
Q 044256 138 CKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM 217 (363)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 217 (363)
...|++++|...|++.++...+++...+..+..++...|++++|+..++...+.. +.+...+..+...|...|++++|.
T Consensus 18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~ 96 (228)
T 4i17_A 18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYI 96 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHH
Confidence 3445555555555554444322333444444444455555555555555444432 113334444444445555555555
Q ss_pred HHHHHHHHhhHHHHHHHhHhcCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc--hHHHHHHHHHH
Q 044256 218 NVSREMILNGFKKIFNEMKLCNVVPET-------FTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL--FVEIFNSLIRG 288 (363)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 288 (363)
..+++.++.. +.+. ..|..+...+...|++++|++.|+++.+.. +. +...+..+..+
T Consensus 97 ~~~~~al~~~-------------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 97 ATLTEGIKAV-------------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHHHHS-------------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 4444444332 1112 223344444444455555555555544432 22 23344444444
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044256 289 CCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357 (363)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 357 (363)
|...| ..+++++...+ ..+...|..... ...+.+++|+..+++..+ +.|+......++.
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~ 221 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 43222 22233333321 112222222221 223345999999999998 4676555544443
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=4.7e-12 Score=94.97 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=143.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCC
Q 044256 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241 (363)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (363)
...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.... +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------~ 73 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-------------P 73 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------T
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------C
Confidence 3467778888999999999999999887653 3467788889999999999999999988877653 3
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHH
Q 044256 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 321 (363)
.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+.
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 151 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIA 151 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHH
Confidence 456788888999999999999999999998775 6678889999999999999999999999998874 45788999999
Q ss_pred HHHHccCChhHHHHHHHHHHHc
Q 044256 322 HALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
..+...|++++|...+++..+.
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999998874
No 78
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.49 E-value=2.1e-12 Score=103.95 Aligned_cols=178 Identities=13% Similarity=-0.026 Sum_probs=139.8
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHH
Q 044256 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARK------GF-MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIF 232 (363)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 232 (363)
....++..+...|...|++++|+..+++..+. +- +....++..+...|...|++++|...++++... .
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~ 115 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-----R 115 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----H
Confidence 34678889999999999999999999988754 22 224567888999999999999999999987643 2
Q ss_pred HHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------c-CcchHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044256 233 NEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS------N-CELFVEIFNSLIRGCCKFGIFEIASELFNKL 305 (363)
Q Consensus 233 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 305 (363)
........+....++..+...+...|++++|...++++.+. + .+....++..+...|...|++++|...++++
T Consensus 116 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 116 EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22211111234567888899999999999999999998865 1 2345678889999999999999999999988
Q ss_pred hhC------------------------------------------------CCCccHHHHHHHHHHHHccCChhHHHHHH
Q 044256 306 SCK------------------------------------------------NLVADVVAYNILIHALGKEGQIKKENYLL 337 (363)
Q Consensus 306 ~~~------------------------------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 337 (363)
... ..+....++..+...|...|++++|..++
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 275 (283)
T 3edt_B 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275 (283)
T ss_dssp HHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 753 11223557788889999999999999999
Q ss_pred HHHHH
Q 044256 338 LSMEE 342 (363)
Q Consensus 338 ~~m~~ 342 (363)
++.++
T Consensus 276 ~~al~ 280 (283)
T 3edt_B 276 DCASR 280 (283)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99876
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=3.7e-12 Score=114.84 Aligned_cols=172 Identities=14% Similarity=0.047 Sum_probs=148.7
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC
Q 044256 19 YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP 98 (363)
Q Consensus 19 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 98 (363)
..|.++.+|+.+..++.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|+..|++.++.. +.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-------P~ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-------PT 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CC
Confidence 367688999999999999999999999999999874 3356789999999999999999999999999864 45
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 044256 99 NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178 (363)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (363)
+...|..+..++.+.|++++|++.|++..+.. +-+...|..+..+|...|++
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~----------------------------P~~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN----------------------------PAFADAHSNLASIHKDSGNI 127 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 68899999999999999999999999988752 22467899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 044256 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227 (363)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (363)
++|+..|++..+.. +-+...+..+..++...|++++|.+.++++.+..
T Consensus 128 ~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 128 PEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 99999999998873 2357789999999999999999999999886543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=4.4e-12 Score=114.37 Aligned_cols=166 Identities=14% Similarity=-0.023 Sum_probs=147.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCC
Q 044256 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240 (363)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 240 (363)
+..+|+.|...|.+.|++++|+..|++..+.. +-+..++..+..+|.+.|++++|+..|++.++..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------------- 73 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------------- 73 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------
Confidence 46789999999999999999999999998873 2357789999999999999999999999988764
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHH
Q 044256 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320 (363)
Q Consensus 241 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (363)
+-+...|..+..++...|++++|++.|++..+.. +-+...|..+..+|...|++++|.+.|++..+.. +-+...|..+
T Consensus 74 P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L 151 (723)
T 4gyw_A 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNL 151 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhh
Confidence 2356789999999999999999999999999876 6678899999999999999999999999999874 4478899999
Q ss_pred HHHHHccCChhHHHHHHHHHHH
Q 044256 321 IHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~m~~ 342 (363)
..++...|++++|.+.+++.++
T Consensus 152 ~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 152 AHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=1.1e-11 Score=92.87 Aligned_cols=168 Identities=14% Similarity=0.020 Sum_probs=142.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 78 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-------PDNVKV 78 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHH
Confidence 45678888999999999999999999988763 4466788889999999999999999999999864 556788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (363)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEAN----------------------------PINFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC----------------------------cHhHHHHHHHHHHHHHcCcHHHHH
Confidence 9999999999999999999999987642 335567888889999999999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 044256 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (363)
..++.+.+.. +.+...+..+...+...|++++|...++++....
T Consensus 131 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 131 DSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999988774 3467788889999999999999999988876543
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=3.2e-11 Score=93.87 Aligned_cols=105 Identities=5% Similarity=-0.158 Sum_probs=91.7
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+.++..|......+...|++++|+..|++..+...+++...+..+..++...|++++|+..|++..+.. +.+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~ 75 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-------YNL 75 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CSH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-------cch
Confidence 3447889999999999999999999999999987633777788889999999999999999999999864 456
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044256 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131 (363)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 131 (363)
..+|..+..++...|++++|...+++..+..+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 107 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP 107 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 78899999999999999999999999987643
No 83
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=8.3e-10 Score=98.62 Aligned_cols=346 Identities=10% Similarity=-0.000 Sum_probs=197.5
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHhcCCh--
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGN---IRDASQLVKKMATFG-CRPNVTTCDTLITGLRRTGNM-- 75 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~-- 75 (363)
++++.+..+|+.++.. .|.+...|...+..-.+.++ ++.+..+|++.+... .+|++..|...+....+.++.
T Consensus 80 ~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 80 KQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred CcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence 5678899999999987 78788999999999999998 999999999998763 138888888877766555543
Q ss_pred ------hHHHHHHHHHHhccCCCCCcc-CC-chhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCcch-h-
Q 044256 76 ------NLTLKLHQEMVNGMGDFGGIY-KP-NVFCYGSLIDGLCK---------DRLVDQTKDLFMEMKDKGINANT-L- 136 (363)
Q Consensus 76 ------~~a~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~-~- 136 (363)
+...++|+.....-+ . .+ +...|...+..... .++++.+..+|+..+........ .
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG-----~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w 232 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCA-----IFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMW 232 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-----TTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhC-----cccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHH
Confidence 334577777665421 2 23 34567666654322 23345555666555532111000 0
Q ss_pred -----hh--------------ccCChHH----------------------------------------------------
Q 044256 137 -----LC--------------KKTKLVE---------------------------------------------------- 145 (363)
Q Consensus 137 -----~~--------------~~~~~~~---------------------------------------------------- 145 (363)
+. ....++.
T Consensus 233 ~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fE 312 (679)
T 4e6h_A 233 QRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWE 312 (679)
T ss_dssp HHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHH
Confidence 00 0001111
Q ss_pred ---------------HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 044256 146 ---------------ANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI-ALFDSMARKGFMPDVFSYSVLINGYCK 209 (363)
Q Consensus 146 ---------------a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (363)
+..+|++++... +-+...|...+..+...|+.+.|. .+|+..... ++.+...|...+....+
T Consensus 313 k~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~ 390 (679)
T 4e6h_A 313 SDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYEL 390 (679)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 112222222211 112233333444445566666775 777766654 33345555566666666
Q ss_pred cCChhHHHHHHHHHHHhh------------------------H--------------------HHHHHHhHhcCCCCChH
Q 044256 210 NFNVEEAMNVSREMILNG------------------------F--------------------KKIFNEMKLCNVVPETF 245 (363)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~------------------------~--------------------~~~~~~~~~~~~~~~~~ 245 (363)
.|+++.|..+|++++... . ..+|....+........
T Consensus 391 ~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ 470 (679)
T 4e6h_A 391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD 470 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH
Confidence 777777777777665420 0 22222222220111223
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC--ccHHHHHHHHH
Q 044256 246 TCNIFIDGLCKN-GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV--ADVVAYNILIH 322 (363)
Q Consensus 246 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~ 322 (363)
.|...+..-.+. ++.+.|.++|+...+. ++.+...+...+......|+.+.|..+|++....... -....|...+.
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333322222233 3477888888877765 3445566667777777778888888888887765321 13456777777
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044256 323 ALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359 (363)
Q Consensus 323 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 359 (363)
.-.+.|+.+.+.++.+++.+. .|+......++.-|
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 777778888888888888774 34444444444433
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=3.3e-11 Score=101.46 Aligned_cols=247 Identities=8% Similarity=-0.086 Sum_probs=177.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 28 NSLIKGFCMEGNIRDASQLVKKMATFGC-RPN----VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 28 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
......+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+++..+.....+........+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3345556789999999999999876421 122 34678888999999999999999999887542111000112567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCCHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLN-PVIFTYTPLLNGYCLVGKVNVA 181 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a 181 (363)
++.+..+|...|++++|...+++..+.. .+.+.+ ....++..+...|...|++++|
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~-----------------------~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELA-----------------------MDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------HHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH-----------------------HHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 8889999999999999999998877531 011111 1235778889999999999999
Q ss_pred HHHHHHHHHc----CCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhc
Q 044256 182 IALFDSMARK----GFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257 (363)
Q Consensus 182 ~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 257 (363)
+..+++..+. +.+....++..+...+.+.|++++|...+++..... ...+.+.....+..+...+...
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~l~~ly~~~ 313 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI--------TARSHKFYKELFLFLQAVYKET 313 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CTTCCSCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHHhCC
Confidence 9999988761 223346678888899999999999999988876432 1112222334566666677777
Q ss_pred CC---HHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 258 GH---VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 258 ~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
++ +.+|+..+++... .+.....+..+...|...|++++|...|++...
T Consensus 314 ~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 314 VDERKIHDLLSYFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88 7778777776321 133445677899999999999999999998865
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=2.3e-11 Score=97.78 Aligned_cols=214 Identities=13% Similarity=-0.034 Sum_probs=153.3
Q ss_pred HhcCChhHHHHHHHHHHhccCCCC-CccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHH
Q 044256 70 RRTGNMNLTLKLHQEMVNGMGDFG-GIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANR 148 (363)
Q Consensus 70 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 148 (363)
...|++++|...|++..+.-.... ...+....++..+...+...|++++|...+++..+.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------- 72 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI------------------- 72 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------------------
Confidence 356677777777776665321000 002345778899999999999999999999988753
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCCcHhHHHHHHHHHHhcCChhHHHHHHH
Q 044256 149 LLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK------G-FMPDVFSYSVLINGYCKNFNVEEAMNVSR 221 (363)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (363)
.........+....++..+...|...|++++|...+++..+. . .+....++..+...|...|++++|...++
T Consensus 73 -~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 151 (283)
T 3edt_B 73 -REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYR 151 (283)
T ss_dssp -HHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -HHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111110111234568888999999999999999999988764 1 12345678888899999999999999998
Q ss_pred HHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------------------
Q 044256 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS---------------------------- 273 (363)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------- 273 (363)
++... .........+....++..+..++...|++++|...++++.+.
T Consensus 152 ~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (283)
T 3edt_B 152 RALEI-----YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKD 226 (283)
T ss_dssp HHHHH-----HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTC
T ss_pred HHHHH-----HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCC
Confidence 87653 111111111223567888899999999999999999998754
Q ss_pred --------------------cCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 274 --------------------NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 274 --------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
..+....++..+...|...|++++|..++++..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 227 KRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11334567888999999999999999999988753
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.38 E-value=1.3e-10 Score=94.09 Aligned_cols=217 Identities=11% Similarity=-0.032 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHc----CCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 115 LVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQR----GLNPV-IFTYTPLLNGYCLVGKVNVAIALFDSMA 189 (363)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 189 (363)
++++|...|++... .+...|++++|...+.+.... +-+++ ..+|+.+..+|.+.|++++|+..+++..
T Consensus 32 ~~~~A~~~~~~a~~-------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 32 KFEEAADLCVQAAT-------IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHHHHHHHHH-------HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 47888888887743 466778888888888777653 22222 5688999999999999999999999876
Q ss_pred Hc----CCCC-cHhHHHHHHHHHHhc-CChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC-ChHHHHHHHHHHHhcCCHHH
Q 044256 190 RK----GFMP-DVFSYSVLINGYCKN-FNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ETFTCNIFIDGLCKNGHVLE 262 (363)
Q Consensus 190 ~~----~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~ 262 (363)
+. |-.+ ...++..+...|... |++++|+..+++.+.... ..+..+ ...++..+...+...|++++
T Consensus 105 ~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~--------~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA--------QDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH--------hCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 54 2111 135788888899996 999999999998875431 111001 13468888999999999999
Q ss_pred HHHHHHHHHhccCcchH------HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccH------HHHHHHHHHHH--ccC
Q 044256 263 VMELFPTLEISNCELFV------EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADV------VAYNILIHALG--KEG 328 (363)
Q Consensus 263 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~--~~g 328 (363)
|+..|++..+....... ..|..+..++...|++++|...|++..... |+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999876422211 256778888999999999999999998752 321 23445556664 456
Q ss_pred ChhHHHHHHHHHHHcCCCCCHH
Q 044256 329 QIKKENYLLLSMEENGCALDVD 350 (363)
Q Consensus 329 ~~~~a~~~~~~m~~~g~~p~~~ 350 (363)
++++|+..|+++.. +.|...
T Consensus 255 ~~~~A~~~~~~~~~--l~~~~~ 274 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR--LDKWKI 274 (292)
T ss_dssp THHHHHHHHTTSSC--CCHHHH
T ss_pred HHHHHHHHhccCCc--cHHHHH
Confidence 78888888877654 455443
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.33 E-value=6e-10 Score=90.11 Aligned_cols=245 Identities=8% Similarity=-0.100 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhc--C-CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCME--G-NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 5 ~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~--~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
.+|.+++.+..+. .+.+...| .+. +. + ++++|...|++. ...|...|++++|...
T Consensus 2 ~~a~~~~~~a~k~--~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 59 (292)
T 1qqe_A 2 SDPVELLKRAEKK--GVPSSGFM-KLF----SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDS 59 (292)
T ss_dssp CCHHHHHHHHHHH--SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHH
T ss_pred CcHHHHHHHHHHH--hCcCCCcc-hhc----CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4678888888776 33122333 322 32 2 589999999887 3467789999999999
Q ss_pred HHHHHhccCCCCCccCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCC
Q 044256 82 HQEMVNGMGDFGGIYKP-NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNP 160 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (363)
|++..+.....+ -++ ...+|+.+..+|.+.|++++|+..+++..+.. ...|+...
T Consensus 60 ~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------~~~g~~~~--------------- 115 (292)
T 1qqe_A 60 FLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-------THRGQFRR--------------- 115 (292)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------HHTTCHHH---------------
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------HHcCCHHH---------------
Confidence 998876431110 111 25689999999999999999999999887531 11111111
Q ss_pred chhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCC----CCc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHH
Q 044256 161 VIFTYTPLLNGYCLV-GKVNVAIALFDSMARKGF----MPD-VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNE 234 (363)
Q Consensus 161 ~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (363)
-..+++.+...|... |++++|+..|++..+... .+. ..++..+...+.+.|++++|+..+++......
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------ 189 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM------ 189 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS------
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh------
Confidence 134677888899996 999999999998876411 101 35688889999999999999999888776430
Q ss_pred hHhcCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcch------HHHHHHHHHHHH--hcCChHHHHHH
Q 044256 235 MKLCNVVPET-----FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF------VEIFNSLIRGCC--KFGIFEIASEL 301 (363)
Q Consensus 235 ~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~--~~~~~~~a~~~ 301 (363)
. .+.. ..|..+..++...|++++|...|++..+.. |+ ...+..++.++. ..+++++|...
T Consensus 190 --~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~ 262 (292)
T 1qqe_A 190 --G---NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKE 262 (292)
T ss_dssp --S---CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred --c---CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 0111 156777888899999999999999987642 22 113445566664 45678889888
Q ss_pred HHHhhhC
Q 044256 302 FNKLSCK 308 (363)
Q Consensus 302 ~~~~~~~ 308 (363)
|+.+...
T Consensus 263 ~~~~~~l 269 (292)
T 1qqe_A 263 FDNFMRL 269 (292)
T ss_dssp HTTSSCC
T ss_pred hccCCcc
Confidence 8877654
No 88
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=3.2e-08 Score=88.46 Aligned_cols=142 Identities=8% Similarity=0.031 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC---hhHHHHHH
Q 044256 6 GALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN---MNLTLKLH 82 (363)
Q Consensus 6 ~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 82 (363)
+.+..|+..+.. .|.|...|..++..+.+.+.++.+..+|+++... .+.+...|...+..-.+.++ .+.+..+|
T Consensus 50 d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 445566777666 6779999999999999999999999999999987 35566778888888888888 99999999
Q ss_pred HHHHhccCCCCCccCCchhhHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-Ccch-----hhh---------
Q 044256 83 QEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV--------DQTKDLFMEMKD-KGI-NANT-----LLC--------- 138 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~~-----~~~--------- 138 (363)
++.+.... .+|++..|...+....+.++. +.+.++|+.... .|. .+.. .+.
T Consensus 127 eRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 127 ARCLSKEL-----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhcC-----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 99998531 138888999888776665543 334577777655 344 4443 111
Q ss_pred ----ccCChHHHHHHHHHHHH
Q 044256 139 ----KKTKLVEANRLLELMMQ 155 (363)
Q Consensus 139 ----~~~~~~~a~~~~~~~~~ 155 (363)
..++++.+..+|+.++.
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHhHHHHHHHHHHHHHh
Confidence 23456678888888775
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=2.2e-10 Score=80.80 Aligned_cols=130 Identities=18% Similarity=0.105 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcch
Q 044256 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278 (363)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 278 (363)
.+..+...+...|++++|..+++++.... +.+...+..+...+...|++++|...++++.... +.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 68 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRS 68 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-------------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCc
Confidence 46677788889999999998888876543 2456778888899999999999999999998775 556
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 279 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
...+..+...+...|++++|.+.++++.... +.+...+..+...+.+.|++++|...++++.+.
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7888999999999999999999999998764 456888899999999999999999999999874
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=5.1e-10 Score=88.99 Aligned_cols=191 Identities=9% Similarity=-0.042 Sum_probs=139.3
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN----VTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI 95 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 95 (363)
.|.++..+..+...+.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|...|+.+.+..+.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~---- 84 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI---- 84 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC----
Confidence 55578889999999999999999999999999873 43 457788899999999999999999999986410
Q ss_pred cCCchhhHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHH
Q 044256 96 YKPNVFCYGSLIDGLCK--------DRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTP 167 (363)
Q Consensus 96 ~~~~~~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (363)
.+.....+..+..++.. .|++++|...|+++.+..+.... ...+...+..+... ....+..
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~a~~~~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL-------VDDATQKIRELRAK----LARKQYE 153 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT-------HHHHHHHHHHHHHH----HHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh-------HHHHHHHHHHHHHH----HHHHHHH
Confidence 11224567778888888 89999999999998876432211 11121111111110 0122456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhc----------CChhHHHHHHHHHHHhh
Q 044256 168 LLNGYCLVGKVNVAIALFDSMARKGFMP--DVFSYSVLINGYCKN----------FNVEEAMNVSREMILNG 227 (363)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~ 227 (363)
+...|.+.|++++|+..|+.+.+..... ....+..+..+|... |++++|...+++++...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 7888999999999999999998763211 244677777778766 88999999998887654
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=4.9e-10 Score=85.75 Aligned_cols=172 Identities=12% Similarity=-0.055 Sum_probs=129.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhHHHH----------------HHHHHHhcCChhHHHHHHHHHHHhhH
Q 044256 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMP-DVFSYSV----------------LINGYCKNFNVEEAMNVSREMILNGF 228 (363)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (363)
......+...|++++|+..|+...+. .| +...|.. +..+|.+.|++++|+..+++.++..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 33455667788888888888888776 23 3445555 8888999999999999999988765
Q ss_pred HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCC--hHHHHHHHHHhh
Q 044256 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI--FEIASELFNKLS 306 (363)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~ 306 (363)
+.+...+..+..++...|++++|+..|+++.+.. |.+..++..+..+|...|+ .+.+...++...
T Consensus 85 ------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 85 ------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp ------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 2457788999999999999999999999999886 6678889999888876654 445555666554
Q ss_pred hCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044256 307 CKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357 (363)
Q Consensus 307 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 357 (363)
. ..|....+.....++...|++++|...|++.++ +.|+......+.+
T Consensus 152 ~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 152 S--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred C--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 2 233334455556677788999999999999998 6788776655443
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=2.7e-09 Score=85.03 Aligned_cols=168 Identities=13% Similarity=0.016 Sum_probs=109.8
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 044256 98 PNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177 (363)
Q Consensus 98 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (363)
++..++..+..++...|++++|++++.+.+..+.. .-+...+..++..+.+.|+
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~--------------------------~~~lea~~l~vqi~L~~~r 151 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA--------------------------EGTTELLLLAIEVALLNNN 151 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS--------------------------TTHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--------------------------cCcHHHHHHHHHHHHHCCC
Confidence 33344445556666666666666666655433210 1245677788888999999
Q ss_pred HHHHHHHHHHHHHcCCCC-----cHhHHHHHHHHHH--h--cCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHH
Q 044256 178 VNVAIALFDSMARKGFMP-----DVFSYSVLINGYC--K--NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248 (363)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (363)
.+.|.+.++.|.+. .| +..+...+..++. . .+++.+|..+|+++.... |+..+-.
T Consensus 152 ~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--------------p~~~~~~ 215 (310)
T 3mv2_B 152 VSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--------------PTWKTQL 215 (310)
T ss_dssp HHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--------------CSHHHHH
T ss_pred HHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--------------CCcccHH
Confidence 99999999998776 45 2455555555532 2 348899988887765442 5533334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc---------CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044256 249 IFIDGLCKNGHVLEVMELFPTLEISN---------CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 249 ~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
.++.++...|++++|.+.++.+.+.. -+.++.+...+|......|+ +|.++++++.+..
T Consensus 216 lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 216 GLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 44457888899999999998765431 14467777666666666676 7888888888763
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.27 E-value=4.9e-09 Score=83.51 Aligned_cols=171 Identities=8% Similarity=-0.063 Sum_probs=128.2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhc
Q 044256 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGF-MPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238 (363)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (363)
++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.+..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~----------- 166 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI----------- 166 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------
Confidence 4455566888999999999999999999877653 2366788889999999999999999988886653
Q ss_pred CCCC-----ChHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-
Q 044256 239 NVVP-----ETFTCNIFIDGLC--KNG--HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK- 308 (363)
Q Consensus 239 ~~~~-----~~~~~~~ll~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 308 (363)
| +..+...++.++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+.
T Consensus 167 ---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 167 ---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6 3556666666633 334 899999999998765 344333344444899999999999999977653
Q ss_pred ----C----CCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH
Q 044256 309 ----N----LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350 (363)
Q Consensus 309 ----~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 350 (363)
+ -+.|+.++..+|......|+ +|.+++.++.+ ..|+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 1 14477777677766666786 89999999998 456544
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=5.5e-10 Score=78.71 Aligned_cols=131 Identities=12% Similarity=0.143 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHH
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYG 104 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (363)
.+|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~ 73 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------CCchHHHH
Confidence 356777788888888888888888887664 3455667777788888888888888888887754 44566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 044256 105 SLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIAL 184 (363)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 184 (363)
.+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~la~~~~~~~~~~~A~~~ 125 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELD----------------------------PRSAEAWYNLGNAYYKQGDYDEAIEY 125 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC----------------------------CCChHHHHHHHHHHHHHccHHHHHHH
Confidence 77888888888888888887776541 22345667777778888888888888
Q ss_pred HHHHHHc
Q 044256 185 FDSMARK 191 (363)
Q Consensus 185 ~~~~~~~ 191 (363)
++.+...
T Consensus 126 ~~~~~~~ 132 (136)
T 2fo7_A 126 YQKALEL 132 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 8777664
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.25 E-value=1.7e-10 Score=88.36 Aligned_cols=161 Identities=9% Similarity=-0.017 Sum_probs=119.4
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNS----------------LIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDT 64 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 64 (363)
.|++++|+..|+.+.+. .|.++..|.. +..++.+.|++++|+..|++.++.. +-+...+..
T Consensus 17 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 93 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEA 93 (208)
T ss_dssp TTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 48899999999999987 7757778888 8999999999999999999998874 446778889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCcchhhhccCC
Q 044256 65 LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLV--DQTKDLFMEMKDKGINANTLLCKKTK 142 (363)
Q Consensus 65 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~ 142 (363)
+..++...|++++|...|++..+.. +.+..+|..+..++...|+. +.+...++....
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-------------- 152 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQLE-------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-------------- 152 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--------------
Confidence 9999999999999999999999864 55678888888877655432 333333333321
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH
Q 044256 143 LVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV 202 (363)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (363)
..|....+.....++...|++++|+..|++..+. .|+......
T Consensus 153 ---------------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 153 ---------------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred ---------------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 1222333444555666788999999999998876 566544433
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=1.1e-09 Score=87.02 Aligned_cols=176 Identities=12% Similarity=-0.095 Sum_probs=135.1
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhH
Q 044256 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD---VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236 (363)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (363)
.+...+..+...+.+.|++++|+..|+.+.+... .+ ...+..+..+|.+.|++++|...|++++...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-------- 83 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-------- 83 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC--------
Confidence 3456777788889999999999999999988732 13 56778888899999999999999988876530
Q ss_pred hcCCCCChHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhccCcchHHHH-----------------HHHHHHHHh
Q 044256 237 LCNVVPETFTCNIFIDGLCK--------NGHVLEVMELFPTLEISNCELFVEIF-----------------NSLIRGCCK 291 (363)
Q Consensus 237 ~~~~~~~~~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~ 291 (363)
+.+.....+..+..++.. .|++++|+..|+++.+.. |.+.... ..+...|..
T Consensus 84 --~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 84 --IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp --TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001123456677778888 999999999999998764 3333333 556888999
Q ss_pred cCChHHHHHHHHHhhhCCCC--ccHHHHHHHHHHHHcc----------CChhHHHHHHHHHHHcCCCCCH
Q 044256 292 FGIFEIASELFNKLSCKNLV--ADVVAYNILIHALGKE----------GQIKKENYLLLSMEENGCALDV 349 (363)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~ 349 (363)
.|++++|...|+++.+.... .....+..+..+|... |++++|...|+++++. .|+.
T Consensus 161 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 161 RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 99999999999999876311 1356777788888866 8999999999999984 4554
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=3.9e-10 Score=102.10 Aligned_cols=174 Identities=11% Similarity=-0.109 Sum_probs=142.9
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 044256 138 CKKTKLVEANRLLELMM--------QRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCK 209 (363)
Q Consensus 138 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (363)
...|++++|.+.+++.. +.. +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56788888888888887 332 4456788889999999999999999999998763 3367788889999999
Q ss_pred cCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 044256 210 NFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGC 289 (363)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 289 (363)
.|++++|...|+++++.. +.+...+..+..++...|++++ ++.|+++.+.+ +.+...|..+..++
T Consensus 480 ~g~~~~A~~~~~~al~l~-------------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~ 544 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-------------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARAR 544 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-------------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-------------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHH
Confidence 999999999999988765 2356788899999999999999 99999999876 66788999999999
Q ss_pred HhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCC
Q 044256 290 CKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329 (363)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 329 (363)
.+.|++++|.+.|+++.+.+ +-+...|..+..++...++
T Consensus 545 ~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999999999998874 3356778888888876555
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=3.6e-09 Score=81.14 Aligned_cols=180 Identities=13% Similarity=-0.044 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC----ChhHHHHHH
Q 044256 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF----NVEEAMNVS 220 (363)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 220 (363)
+|.+.|++..+.| +...+..+...|...+++++|+.+|++..+.| ++..+..|-..|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666654 56778888899999999999999999998875 56777777777777 6 899999998
Q ss_pred HHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHh----
Q 044256 221 REMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCK----NGHVLEVMELFPTLEISNCE-LFVEIFNSLIRGCCK---- 291 (363)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~---- 291 (363)
++.... .+...+..+...|.. .+++++|+..|++..+.+.. .++..+..|...|..
T Consensus 77 ~~A~~~---------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 77 EKAVEA---------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp HHHHHT---------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHC---------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC
Confidence 887654 356677778888876 78999999999999987621 236788888888988
Q ss_pred cCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHcc-C-----ChhHHHHHHHHHHHcCCCCC
Q 044256 292 FGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE-G-----QIKKENYLLLSMEENGCALD 348 (363)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~~p~ 348 (363)
.+++++|...|++..+. +.+...+..+...|... | ++++|..+|++..+.|...-
T Consensus 142 ~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A 202 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTG 202 (212)
T ss_dssp SCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 88999999999999886 23555677777777643 3 89999999999999875433
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=4.3e-08 Score=78.81 Aligned_cols=219 Identities=8% Similarity=-0.050 Sum_probs=146.8
Q ss_pred hhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCcccHHHHHHHH----Hhc---CCh
Q 044256 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEG--NIRDASQLVKKMATFGCRPNVTTCDTLITGL----RRT---GNM 75 (363)
Q Consensus 5 ~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~---~~~ 75 (363)
++|+++++.++.. .|.+..+|+.--.++...| ++++++.+++.++..+ +-+..+|+.-..++ ... +++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 5788888888886 7767888998888888888 8999999999988874 34555677655555 455 788
Q ss_pred hHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHH
Q 044256 76 NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD--QTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELM 153 (363)
Q Consensus 76 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 153 (363)
++++.+++.+.+.. +.|..+|+.-...+.+.|.++ ++++.++++.+..+
T Consensus 127 ~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~---------------------- 177 (306)
T 3dra_A 127 YREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL---------------------- 177 (306)
T ss_dssp HHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT----------------------
T ss_pred HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC----------------------
Confidence 89999999998865 677888888877777778777 77777777776532
Q ss_pred HHcCCCCchhhHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHH-HHHHHHHHh
Q 044256 154 MQRGLNPVIFTYTPLLNGYCLVGK------VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAM-NVSREMILN 226 (363)
Q Consensus 154 ~~~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~ 226 (363)
-|-..|+.-...+.+.+. ++++++.++.+.... +-|...|+.+-..+.+.|+...+. .+..++...
T Consensus 178 ------~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 178 ------KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp ------TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred ------CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 345566655555555554 677777777766653 336667776666666666644432 222222110
Q ss_pred hHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044256 227 GFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272 (363)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (363)
+ ..-+.++..+..+..++.+.|+.++|.++++.+.+
T Consensus 251 ~----------~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 251 E----------KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp G----------GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c----------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 0 00123455566666666666666667666666654
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=9e-08 Score=76.96 Aligned_cols=236 Identities=10% Similarity=-0.034 Sum_probs=164.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC--ChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHH--
Q 044256 35 CMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG--NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL-- 110 (363)
Q Consensus 35 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-- 110 (363)
.+....++|+.+++.++..+ +-+...|+.--.++...+ ++++++..++.+.... +.+..+|+.--..+
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-------Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-------EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-------TTCCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-------cccHHHHHHHHHHHHH
Confidence 33444579999999999874 334556888888888888 9999999999999865 56677787655555
Q ss_pred --Hhc---CCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH--HHHH
Q 044256 111 --CKD---RLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN--VAIA 183 (363)
Q Consensus 111 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~ 183 (363)
... +++++++.+++++.+.. +-+..+|+.-.-.+.+.|.++ +++.
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~----------------------------pkny~aW~~R~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSD----------------------------PKNHHVWSYRKWLVDTFDLHNDAKELS 167 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHhccccCCHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHhcccChHHHHH
Confidence 444 56677777777766542 345667777777777788887 9999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCC------hhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhc
Q 044256 184 LFDSMARKGFMPDVFSYSVLINGYCKNFN------VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257 (363)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 257 (363)
.++.+.+.... |...|+.....+...+. ++++++.+.+++..+ +-|...|+.+-..+.+.
T Consensus 168 ~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-------------p~n~SaW~y~~~ll~~~ 233 (306)
T 3dra_A 168 FVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-------------PQNPSTWNYLLGIHERF 233 (306)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-------------SSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-------------CCCccHHHHHHHHHHhc
Confidence 99999887533 66777766666666665 677777777666554 34667787777777777
Q ss_pred CCHHH-HHHHHHHHHhcc--CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh-CCCCccHHHHHHHH
Q 044256 258 GHVLE-VMELFPTLEISN--CELFVEIFNSLIRGCCKFGIFEIASELFNKLSC-KNLVADVVAYNILI 321 (363)
Q Consensus 258 ~~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li 321 (363)
|+... +..+..++...+ -+.+...+..+...|.+.|+.++|.++++.+.+ .+ +.....|+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D-pir~~yW~~~~ 300 (306)
T 3dra_A 234 DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN-PIRSNFWDYQI 300 (306)
T ss_dssp TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-GGGHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 76443 445666555432 134567777788888888888888888888775 33 34455555443
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.20 E-value=1.1e-09 Score=88.26 Aligned_cols=168 Identities=13% Similarity=-0.075 Sum_probs=136.3
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhc
Q 044256 159 NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLC 238 (363)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (363)
+.+...+..+...+...|++++|+..|++..+.. +-+...+..+...+.+.|++++|...++++....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~----------- 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD----------- 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-----------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-----------
Confidence 4556677788888999999999999999998873 3366788889999999999999998877765443
Q ss_pred CCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-ccHHH
Q 044256 239 NVVPETFTCNIFI-DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV-ADVVA 316 (363)
Q Consensus 239 ~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 316 (363)
|+........ ..+...++.+.|...+++..... |.+...+..+...+...|++++|...|+++.+.... .+...
T Consensus 182 ---p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 182 ---QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 5544333322 33667788888999999998876 777889999999999999999999999999986422 12678
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 317 YNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 317 ~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
+..++..+...|+.++|...|++.+.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999988764
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=2.5e-09 Score=96.84 Aligned_cols=185 Identities=9% Similarity=-0.106 Sum_probs=147.1
Q ss_pred HhcCChhHHHHHHHHHH--------hccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccC
Q 044256 70 RRTGNMNLTLKLHQEMV--------NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141 (363)
Q Consensus 70 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 141 (363)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|...|++..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-------SESVELPLMEVRALLDLGDVAKATRKLDDLAERV----------- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------
Confidence 67899999999999998 432 5567889999999999999999999999988742
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHH
Q 044256 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSR 221 (363)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (363)
+.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.+.|++++ ...++
T Consensus 464 -----------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 464 -----------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred -----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 3356788888999999999999999999988873 2356778888889999999999 99998
Q ss_pred HHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCC-------
Q 044256 222 EMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI------- 294 (363)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------- 294 (363)
++++.+ +.+...|..+..++...|++++|++.|+++.+.. +.+...+..+..++...++
T Consensus 525 ~al~~~-------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~ 590 (681)
T 2pzi_A 525 TVWSTN-------------DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEE 590 (681)
T ss_dssp HHHHHC-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-------CCHH
T ss_pred HHHHhC-------------CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHH
Confidence 887765 2456788889999999999999999999998765 5567788888888766554
Q ss_pred -hHHHHHHHHHh
Q 044256 295 -FEIASELFNKL 305 (363)
Q Consensus 295 -~~~a~~~~~~~ 305 (363)
+++|.+.+..+
T Consensus 591 ~~~~A~~~l~~~ 602 (681)
T 2pzi_A 591 QIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhhC
Confidence 45555555444
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.18 E-value=1.1e-09 Score=97.49 Aligned_cols=153 Identities=12% Similarity=0.005 Sum_probs=111.4
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
+|++++|.+.|+++.+. .|.+...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47899999999999886 77689999999999999999999999999999874 3456788999999999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCC
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNP 160 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (363)
.+++..+.. +.+...+..+..++.+.|++++|.+.|++..+... .
T Consensus 79 ~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------------------------~ 123 (568)
T 2vsy_A 79 LLQQASDAA-------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP----------------------------E 123 (568)
T ss_dssp HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------------------T
T ss_pred HHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------------------C
Confidence 999999864 55678999999999999999999999999887532 2
Q ss_pred chhhHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 044256 161 VIFTYTPLLNGYCLV---GKVNVAIALFDSMARK 191 (363)
Q Consensus 161 ~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 191 (363)
+...+..+...+... |+.++|...+++..+.
T Consensus 124 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 344566666666666 7777777777766665
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=7.2e-10 Score=82.36 Aligned_cols=164 Identities=13% Similarity=-0.035 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC
Q 044256 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP 242 (363)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (363)
..+..+...+...|++++|+..|+...+.. +.+...+..+...+...|++++|...++++.... |
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--------------p 71 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--------------Q 71 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--------------C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--------------C
Confidence 356667788889999999999999877652 2356788888899999999999988777665432 4
Q ss_pred ChHHHHHHHHH-HHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCc-cHHHHHHH
Q 044256 243 ETFTCNIFIDG-LCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA-DVVAYNIL 320 (363)
Q Consensus 243 ~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 320 (363)
+...+...... +...+....|...+++..+.. |.+...+..+..++...|++++|...|+++.+....+ +...+..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 72 DNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 33333222211 122233345788899888765 5568899999999999999999999999998874322 35688899
Q ss_pred HHHHHccCChhHHHHHHHHHHH
Q 044256 321 IHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~m~~ 342 (363)
..++...|+.++|...|++.+.
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999998765
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.17 E-value=5.5e-09 Score=80.96 Aligned_cols=164 Identities=12% Similarity=-0.023 Sum_probs=115.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCC
Q 044256 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFM-P-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241 (363)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (363)
.+..+...+.+.|++++|+..|+.+.+.... | ....+..+..+|.+.|++++|+..++++++..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-------------- 71 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-------------- 71 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--------------
Confidence 4455566677788888888888887765211 1 13456667777888888888887777776543
Q ss_pred CChH----HHHHHHHHHH------------------hcCCHHHHHHHHHHHHhccCcchHHHH-----------------
Q 044256 242 PETF----TCNIFIDGLC------------------KNGHVLEVMELFPTLEISNCELFVEIF----------------- 282 (363)
Q Consensus 242 ~~~~----~~~~ll~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------- 282 (363)
|+.. .+..+..++. ..|++++|...|+++++.. |-+...+
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHH
Confidence 3321 2333333333 3678999999999998763 3232222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCcc---HHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVAD---VVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 283 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
..+...|.+.|++++|...|+++.+.. +.+ ...+..+..++.+.|++++|.+.++.+...
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 345667889999999999999998763 112 356888899999999999999999999875
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.17 E-value=1.8e-09 Score=87.93 Aligned_cols=240 Identities=7% Similarity=-0.100 Sum_probs=158.1
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
+|++++|.+++++..+. .+ .. + +...++++.|...|++. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~--~~-~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKY--LK-TS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHH--HC-CC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHH--cc-cc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 37889999999988765 23 11 0 11157888888888765 456778899999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCC
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNP 160 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (363)
.|.+..+.....+. ...-..+|+.+..+|.+.|++++|+..|++..+.. ...|+...
T Consensus 58 ~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------~~~g~~~~--------------- 114 (307)
T 2ifu_A 58 AYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY-------VENGTPDT--------------- 114 (307)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-------HTTTCHHH---------------
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-------HHcCCHHH---------------
Confidence 99888764311100 01124578888888888899999998888876521 11111111
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHh
Q 044256 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARK----GFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEM 235 (363)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (363)
...++..+...|.. |++++|+..|++..+. +..+ ...++..+...|.+.|++++|+..+++.+....
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------- 186 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK------- 186 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------
Confidence 13467778888888 9999999999987654 1111 145778888899999999999999998765431
Q ss_pred HhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCc-ch---HHHHHHHHHHHHhcCChHHHHH
Q 044256 236 KLCNVVPE-TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE-LF---VEIFNSLIRGCCKFGIFEIASE 300 (363)
Q Consensus 236 ~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~li~~~~~~~~~~~a~~ 300 (363)
..+..+. ...+..+..++...|++++|...|++.. .... ++ ......++.++ ..|+.+.+..
T Consensus 187 -~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 187 -EMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred -HcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 1111111 2256666777788899999999999988 4210 11 22344555555 5677666655
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=4.7e-10 Score=80.87 Aligned_cols=118 Identities=8% Similarity=-0.034 Sum_probs=99.6
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|++++|+..+...... .|.++..+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++...|++++|...
T Consensus 11 ~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 11 ADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 7889999999988775 56567788889999999999999999999999874 44677899999999999999999999
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHH-HHHHHHc
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDL-FMEMKDK 129 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~ 129 (363)
|+...+.. +.+..+|..+...+.+.|++++|.+. +++..+.
T Consensus 88 ~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 88 YRRSVELN-------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999864 45678899999999999998776654 5777664
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=4.1e-10 Score=81.19 Aligned_cols=138 Identities=9% Similarity=-0.051 Sum_probs=60.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHH
Q 044256 173 CLVGKVNVAIALFDSMARKGFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251 (363)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 251 (363)
...|++++|+..+...... .| +...+-.+...|.+.|++++|+..+++.++.. +.+..+|..+.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-------------p~~~~a~~~lg 72 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-------------ERDPKAHRFLG 72 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHH
Confidence 3344455555554444332 11 22233344444555555555555544444332 12334444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHH-HHHhhhCCCCccHHHHHHHHHHHHcc
Q 044256 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL-FNKLSCKNLVADVVAYNILIHALGKE 327 (363)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~ 327 (363)
.++...|++++|+..|++..+.. |-+..++..+...|.+.|++++|.+. +++..+.. |-++.+|......+...
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTC
T ss_pred HHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 55555555555555555554443 33344455555555555554433332 34444432 22344444333333333
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=4e-10 Score=83.77 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044256 27 FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87 (363)
Q Consensus 27 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 87 (363)
+......+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 4444444555555555555555544432 22334445555555555555555555555444
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.13 E-value=6.3e-09 Score=83.84 Aligned_cols=168 Identities=12% Similarity=-0.017 Sum_probs=125.0
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCch
Q 044256 21 PLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNV 100 (363)
Q Consensus 21 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
|.+...+..+...+.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|...++.+... .|+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--------~p~~ 184 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--------DQDT 184 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--------GCSH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--------hcch
Confidence 5467778888888888888888888888888763 335567778888888888888888888887764 3443
Q ss_pred hhHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 044256 101 FCYGS-LIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179 (363)
Q Consensus 101 ~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 179 (363)
..... ....+.+.++.+.|...+++..... +.+...+..+...+...|+++
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~----------------------------P~~~~~~~~la~~l~~~g~~~ 236 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAEN----------------------------PEDAALATQLALQLHQVGRNE 236 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcC----------------------------CccHHHHHHHHHHHHHcccHH
Confidence 32222 2233555666666676666666531 345778889999999999999
Q ss_pred HHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044256 180 VAIALFDSMARKGFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMIL 225 (363)
Q Consensus 180 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (363)
+|+..|.++.+..... +...+..+...+...|+.++|...+++.+.
T Consensus 237 ~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 237 EALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999998874221 266889999999999999999988877543
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.12 E-value=3.8e-08 Score=85.31 Aligned_cols=104 Identities=10% Similarity=0.060 Sum_probs=72.0
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-hhHHHHH
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN-MNLTLKL 81 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 81 (363)
+++.|..+|+.++.. .| . |+++.+..+|++.+.. .|+...|...+....+.+. .+....+
T Consensus 10 ~i~~aR~vyer~l~~--~P-~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 10 ELSSPSAIMEHARRL--YM-S--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp --CCHHHHHHHHHHH--HH-T--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred chHHHHHHHHHHHHH--CC-C--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 377788888888775 56 3 7899999999998875 5788888888877776663 4567778
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHH----hcCCHHHHHHHHHHHHHc
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLC----KDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~ 129 (363)
|+.....-+. -+.+...|...+..+. ..++.+.+..+|++.+..
T Consensus 71 fe~al~~vg~----d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 71 YEFTLGQFEN----YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHSTT----CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCC----CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 8877764210 1345677877776654 245677888888888763
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.12 E-value=1e-08 Score=79.42 Aligned_cols=185 Identities=12% Similarity=0.025 Sum_probs=122.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV----TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP 98 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 98 (363)
++..+..+...+.+.|++++|+..|+++.+. .|+. ..+..+..++.+.|++++|+..|+++.+.. +.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-------P~ 73 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-------PT 73 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------cC
Confidence 4567777888899999999999999999876 3432 467778899999999999999999999854 22
Q ss_pred ch---hhHHHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcC
Q 044256 99 NV---FCYGSLIDGLCK------------------DRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRG 157 (363)
Q Consensus 99 ~~---~~~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 157 (363)
+. ..+..+..++.. .|++++|...|+++.+..+..... ..+...+..+...
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a-------~~a~~~l~~~~~~- 145 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT-------TDATKRLVFLKDR- 145 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH-------HHHHHHHHHHHHH-
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH-------HHHHHHHHHHHHH-
Confidence 22 234444444443 455666666666666543221110 1111111111100
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 044256 158 LNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMP--DVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227 (363)
Q Consensus 158 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (363)
.......+...|.+.|+++.|+..|+.+.+..... ....+..+..++.+.|++++|...++.+...+
T Consensus 146 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 ---LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00112345677889999999999999998873211 12467788899999999999998888776553
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=9e-09 Score=83.85 Aligned_cols=163 Identities=7% Similarity=-0.101 Sum_probs=82.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCC-CC
Q 044256 170 NGYCLVGKVNVAIALFDSMARK----GFMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV-PE 243 (363)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 243 (363)
..|...|++++|...|.+..+. +-.+ -..+|..+...|...|++++|+..+++.+... .. .+-. ..
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----~~---~g~~~~~ 115 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY-----VE---NGTPDTA 115 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----HT---TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-----HH---cCCHHHH
Confidence 4455566666666666554432 1000 12345555566666666666666666554321 11 1100 01
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCc-----chHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCcc-
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE-----LFVEIFNSLIRGCCKFGIFEIASELFNKLSCK----NLVAD- 313 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~- 313 (363)
..++..+..+|.. |++++|+..|++....... ....++..+...|...|++++|...|++.... +..+.
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 2345555555655 6666666666665543100 01345556666666666666666666665542 11111
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHH
Q 044256 314 VVAYNILIHALGKEGQIKKENYLLLSME 341 (363)
Q Consensus 314 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 341 (363)
...+..+..++...|++++|...|++.+
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1244444555555666666666666665
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=3.8e-09 Score=93.91 Aligned_cols=163 Identities=8% Similarity=-0.071 Sum_probs=118.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHH
Q 044256 140 KTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219 (363)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 219 (363)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999888764 3457788889999999999999999999988863 33577888889999999999999999
Q ss_pred HHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhc---CChH
Q 044256 220 SREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF---GIFE 296 (363)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~ 296 (363)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+++
T Consensus 80 ~~~al~~~-------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~ 145 (568)
T 2vsy_A 80 LQQASDAA-------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALD 145 (568)
T ss_dssp HHHHHHHC-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHHhcC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHH
Confidence 88887654 2356788889999999999999999999998875 55678888999999999 9999
Q ss_pred HHHHHHHHhhhCCCCccHHHHHH
Q 044256 297 IASELFNKLSCKNLVADVVAYNI 319 (363)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~ 319 (363)
+|.+.+++..+.+ +.+...|..
T Consensus 146 ~A~~~~~~al~~~-p~~~~~~~~ 167 (568)
T 2vsy_A 146 VLSAQVRAAVAQG-VGAVEPFAF 167 (568)
T ss_dssp HHHHHHHHHHHHT-CCCSCHHHH
T ss_pred HHHHHHHHHHhcC-CcccChHHH
Confidence 9999999998875 233344443
No 115
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.08 E-value=3.1e-09 Score=78.96 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=101.9
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCCh--hH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITG-LRRTGNM--NL 77 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 77 (363)
.|++++|...|+...+. .|.++..|..+...+...|++++|+..|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 37889999999999887 67688999999999999999999999999998774 3456677788888 7788998 99
Q ss_pred HHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044256 78 TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGI 131 (363)
Q Consensus 78 a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 131 (363)
|...++.+.+.. +.+...+..+..++...|++++|...|++..+...
T Consensus 100 A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 100 TRAMIDKALALD-------SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999864 55678888999999999999999999999987643
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=3.8e-08 Score=75.39 Aligned_cols=174 Identities=9% Similarity=-0.139 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHc
Q 044256 77 LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQR 156 (363)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 156 (363)
+|.+.|++..+. -++..+..+...|...+++++|...|++..+.+
T Consensus 4 eA~~~~~~aa~~---------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-------------------------- 48 (212)
T 3rjv_A 4 EPGSQYQQQAEA---------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-------------------------- 48 (212)
T ss_dssp CTTHHHHHHHHT---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------------------
T ss_pred hHHHHHHHHHHC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------------------
Confidence 466777777763 356778888888888889998888888877642
Q ss_pred CCCCchhhHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCChhHHHHHHHHHHHhhH
Q 044256 157 GLNPVIFTYTPLLNGYCLVG----KVNVAIALFDSMARKGFMPDVFSYSVLINGYCK----NFNVEEAMNVSREMILNGF 228 (363)
Q Consensus 157 ~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 228 (363)
+...+..|...|.. + ++++|..+|+...+.| +...+..|...|.. .+++++|+..+++....+
T Consensus 49 ----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~- 119 (212)
T 3rjv_A 49 ----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS- 119 (212)
T ss_dssp ----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-
T ss_pred ----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-
Confidence 34566667777777 6 8999999999988765 56677777777776 789999998888776554
Q ss_pred HHHHHHhHhcCCCCC---hHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhc-C-----Ch
Q 044256 229 KKIFNEMKLCNVVPE---TFTCNIFIDGLCK----NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF-G-----IF 295 (363)
Q Consensus 229 ~~~~~~~~~~~~~~~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-----~~ 295 (363)
++ ...+..|...|.. .+++++|+..|++..+. +.+...+..|...|... | ++
T Consensus 120 -------------~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~ 184 (212)
T 3rjv_A 120 -------------ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNK 184 (212)
T ss_dssp -------------TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCH
T ss_pred -------------CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCH
Confidence 42 6677788888887 78899999999999876 23455677777777653 3 89
Q ss_pred HHHHHHHHHhhhCC
Q 044256 296 EIASELFNKLSCKN 309 (363)
Q Consensus 296 ~~a~~~~~~~~~~~ 309 (363)
++|...|+...+.|
T Consensus 185 ~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 185 QKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998876
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.06 E-value=4.9e-09 Score=75.22 Aligned_cols=104 Identities=12% Similarity=-0.047 Sum_probs=93.3
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC
Q 044256 19 YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP 98 (363)
Q Consensus 19 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 98 (363)
..|.++..+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|++..+.. +.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-------P~ 102 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-------KN 102 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------SS
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------CC
Confidence 456678889999999999999999999999999874 4467789999999999999999999999999965 56
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044256 99 NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130 (363)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 130 (363)
+...|..+..++.+.|++++|...|++..+..
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 68899999999999999999999999998864
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.06 E-value=3.9e-07 Score=78.96 Aligned_cols=309 Identities=9% Similarity=-0.059 Sum_probs=172.4
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCC-HHHHHHHHHHHHhc-CCC-CCcccHHHHHHHHH----hcCC
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGN-IRDASQLVKKMATF-GCR-PNVTTCDTLITGLR----RTGN 74 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~-~~~-~~~~~~~~l~~~~~----~~~~ 74 (363)
|+++.|..+|++.+.. .| +...|...+....+.+. .+....+|+..+.. |.. ++...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~--~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc--CC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6789999999999986 68 99999999998888774 46677888887764 433 35567777766543 2456
Q ss_pred hhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHh-------------cCCHHHHHHHHHHHHHc--CCCcch----
Q 044256 75 MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK-------------DRLVDQTKDLFMEMKDK--GINANT---- 135 (363)
Q Consensus 75 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~--~~~~~~---- 135 (363)
.+.+..+|+..+... ...-...|......-.. .+.+..|..+++++... +.....
T Consensus 105 ~~~vR~iy~rAL~~P------~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y 178 (493)
T 2uy1_A 105 IEKIRNGYMRALQTP------MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARL 178 (493)
T ss_dssp HHHHHHHHHHHHTSC------CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHhCh------hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 788999999998732 11112223222211100 01122233333332221 000000
Q ss_pred -hhhcc--------CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH----
Q 044256 136 -LLCKK--------TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSV---- 202 (363)
Q Consensus 136 -~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 202 (363)
-+... +..+.+..++++++... +.+...|...+..+.+.|+.+.|..++++.... +.+...+..
T Consensus 179 ~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~ 255 (493)
T 2uy1_A 179 IDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV 255 (493)
T ss_dssp HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH
T ss_pred HHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh
Confidence 00010 01234556677766643 344566766777777778888888888877766 223222221
Q ss_pred ------------------------------------HHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHH
Q 044256 203 ------------------------------------LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246 (363)
Q Consensus 203 ------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (363)
.+....+.+..+.|. .++... .. ...+...
T Consensus 256 ~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR------------~i~~~A-~~-~~~~~~v 321 (493)
T 2uy1_A 256 MDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR------------KLFIEL-GN-EGVGPHV 321 (493)
T ss_dssp TTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH------------HHHHHH-TT-SCCCHHH
T ss_pred cchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH------------HHHHHh-hC-CCCChHH
Confidence 111111222222222 333333 11 1123333
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 044256 247 CNIFIDGLCK-NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325 (363)
Q Consensus 247 ~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 325 (363)
|......-.. .++++.|..+|+...+.- +.++..+...+....+.|+.+.|..+|+.+. .....|...+..-.
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 4322222222 235788888888877652 3334455666676677788888888888873 25677777777667
Q ss_pred ccCChhHHHHHHHHHHH
Q 044256 326 KEGQIKKENYLLLSMEE 342 (363)
Q Consensus 326 ~~g~~~~a~~~~~~m~~ 342 (363)
..|+.+.+..+++++.+
T Consensus 396 ~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 396 MVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77888888888887764
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.05 E-value=7.3e-09 Score=72.04 Aligned_cols=110 Identities=8% Similarity=-0.084 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (363)
..+......|.+.|++++|++.|++.++.. |.+..+|..+..+|.+.|++++|...+++..+.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 467778889999999999999999999876 7788999999999999999999999999999875 55788999999999
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044256 325 GKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358 (363)
Q Consensus 325 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 358 (363)
...|++++|.+.|++.++ +.|+......-+.-
T Consensus 92 ~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ--VDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHH
Confidence 999999999999999998 56765554444433
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.02 E-value=3.3e-09 Score=76.15 Aligned_cols=102 Identities=13% Similarity=-0.019 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (363)
..+..+...+...|++++|+..|+++.... |.++..|..+..+|...|++++|...|++..... +.++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 355566666777777777777777777665 5566777777777777777777777777777654 34566777777777
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCHH
Q 044256 325 GKEGQIKKENYLLLSMEENGCALDVD 350 (363)
Q Consensus 325 ~~~g~~~~a~~~~~~m~~~g~~p~~~ 350 (363)
...|++++|...|++.++. .|+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 7777777777777777763 45543
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=7e-09 Score=72.13 Aligned_cols=103 Identities=9% Similarity=-0.024 Sum_probs=92.5
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC
Q 044256 19 YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP 98 (363)
Q Consensus 19 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 98 (363)
+.|..+..+......+.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..|++.++.. +.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~ 79 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-------SK 79 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-------hh
Confidence 567567889999999999999999999999998875 4567889999999999999999999999999865 56
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 99 NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
+...|..+..++...|++++|.+.|++..+.
T Consensus 80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 80 FIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999875
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.98 E-value=7e-08 Score=73.88 Aligned_cols=128 Identities=10% Similarity=-0.143 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC
Q 044256 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243 (363)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (363)
.+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++..... +.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------~~~ 70 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------------KHL 70 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------ccc
Confidence 34556677778889999988887763 4577788888888888899999988888776543 245
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc----------------hHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL----------------FVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
...+..+..++...|++++|...|++..+.. +. ....+..+..+|...|++++|.+.|++..+
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6678888888888899999999888887643 22 236778888888889999999999988887
Q ss_pred CC
Q 044256 308 KN 309 (363)
Q Consensus 308 ~~ 309 (363)
..
T Consensus 150 ~~ 151 (213)
T 1hh8_A 150 MK 151 (213)
T ss_dssp TC
T ss_pred cC
Confidence 64
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=8.3e-08 Score=73.46 Aligned_cols=144 Identities=9% Similarity=-0.121 Sum_probs=113.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhH
Q 044256 24 DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCY 103 (363)
Q Consensus 24 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (363)
...+..+...+...|++++|+..|++.. .|+...|..+..++...|++++|...|+...+.. +.+...|
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~ 74 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAY 74 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------ccchHHH
Confidence 3456677888899999999999998874 6688899999999999999999999999999864 5667889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch-hhhccCChHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcCCHHHH
Q 044256 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANT-LLCKKTKLVEANRLLELMMQRGLNP-VIFTYTPLLNGYCLVGKVNVA 181 (363)
Q Consensus 104 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a 181 (363)
..+..++...|++++|...|++..+....... .+...+. ...| ....+..+..++.+.|++++|
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL--------------QFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB--------------CCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc--------------ccCccchHHHHHHHHHHHHccCHHHH
Confidence 99999999999999999999999875322110 0000000 0111 236778888999999999999
Q ss_pred HHHHHHHHHcC
Q 044256 182 IALFDSMARKG 192 (363)
Q Consensus 182 ~~~~~~~~~~~ 192 (363)
...|+...+..
T Consensus 141 ~~~~~~al~~~ 151 (213)
T 1hh8_A 141 EEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHcC
Confidence 99999988874
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.97 E-value=5.3e-08 Score=71.19 Aligned_cols=131 Identities=9% Similarity=-0.048 Sum_probs=105.5
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCc
Q 044256 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276 (363)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 276 (363)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..... +
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~ 78 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-K 78 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 3456667778888999999998888877654 2456788888899999999999999999998875 6
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHH--HHHHHccCChhHHHHHHHHHHH
Q 044256 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL--IHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 277 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~ 342 (363)
.+...+..+..++...|++++|...++++.... +.+...+..+ ...+...|++++|...+.....
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 678889999999999999999999999998764 3355555433 4447788999999999887654
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.96 E-value=1.5e-08 Score=75.29 Aligned_cols=134 Identities=8% Similarity=-0.009 Sum_probs=105.2
Q ss_pred HhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 044256 208 CKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIR 287 (363)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 287 (363)
...|++++|...+++..... +.+...+..+...|...|++++|...|+++.... +.+...+..+..
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~ 86 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-------------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALAT 86 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhC-------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 45788888988888776654 3456788889999999999999999999998875 557788888888
Q ss_pred H-HHhcCCh--HHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044256 288 G-CCKFGIF--EIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358 (363)
Q Consensus 288 ~-~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 358 (363)
+ +...|++ ++|...++++.... +.+...+..+...+...|++++|...|++..+. .|+......++..
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLVES 157 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHHHH
Confidence 8 8899998 99999999998874 446888889999999999999999999999984 4544333344433
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.95 E-value=4.4e-09 Score=75.50 Aligned_cols=112 Identities=8% Similarity=-0.073 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044256 8 LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVN 87 (363)
Q Consensus 8 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 87 (363)
-..|+.+.+. .|.+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|+....
T Consensus 7 ~~~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 7 GGTIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CCSHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666654 66678889999999999999999999999998874 44677888999999999999999999999998
Q ss_pred ccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 88 GMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
.. +.+...+..+..++...|++++|...|++..+.
T Consensus 84 l~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 84 MD-------IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 64 556788999999999999999999999998875
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.94 E-value=1.3e-08 Score=79.93 Aligned_cols=186 Identities=5% Similarity=-0.204 Sum_probs=137.3
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--------------
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSL-------IKGFCMEGNIRDASQLVKKMATFGCRPNVT-------------- 60 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------------- 60 (363)
++.+.|.+.|..+.+. .|.....|..+ ...+.+.++..+++..+..-.. +.|+..
T Consensus 20 ~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 20 MSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred CCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 6889999999999997 88789999999 6777777777777777766554 233211
Q ss_pred --------cHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044256 61 --------TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGIN 132 (363)
Q Consensus 61 --------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 132 (363)
.+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--------p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-- 165 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--------SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-- 165 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--------CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--
Confidence 12335677888999999999999888743 433366666678889999999999987443210
Q ss_pred cchhhhccCChHHHHHHHHHHHHcCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HhHHHHHHHHHH
Q 044256 133 ANTLLCKKTKLVEANRLLELMMQRGLNP--VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD--VFSYSVLINGYC 208 (363)
Q Consensus 133 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 208 (363)
.| ....+..+..++...|++++|+..|++.......|. .........++.
T Consensus 166 --------------------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~ 219 (282)
T 4f3v_A 166 --------------------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR 219 (282)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH
T ss_pred --------------------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 11 123677788899999999999999999875433243 335566667788
Q ss_pred hcCChhHHHHHHHHHHHhh
Q 044256 209 KNFNVEEAMNVSREMILNG 227 (363)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~ 227 (363)
+.|+.++|..+|+++...+
T Consensus 220 ~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 220 SQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 9999999999998887764
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.92 E-value=3.1e-09 Score=87.67 Aligned_cols=114 Identities=8% Similarity=-0.045 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----------------ccHHHHHH
Q 044256 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV----------------TTCDTLIT 67 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~l~~ 67 (363)
+++|...|+...+. .|.+...|..+...+.+.|++++|+..|++.++.. |+. .+|..+..
T Consensus 129 ~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 129 FEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333 34366778888888888888888888888888763 333 44555555
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 68 GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 68 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 128 (363)
++.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|++..+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555555532 33444555555555555555555555555444
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.90 E-value=2.5e-06 Score=69.47 Aligned_cols=184 Identities=9% Similarity=-0.072 Sum_probs=125.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHhccCCCCCccCCchhhHHH
Q 044256 27 FNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG-NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGS 105 (363)
Q Consensus 27 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (363)
++.+-....+.+..++|++++++++..+ +-+..+|+.--.++...+ .+++++..++.+.... +.+..+|+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-------PKny~aW~h 128 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-------LKSYQVWHH 128 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-------CCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------CCcHHHHHH
Confidence 4444444455556678999999998874 334556788777777778 5899999999999865 667788887
Q ss_pred HHHHHHhc-C-CHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH----
Q 044256 106 LIDGLCKD-R-LVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN---- 179 (363)
Q Consensus 106 ll~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~---- 179 (363)
-..++.+. + ++++++++++++.+.. +-|-.+|+.-.-.+.+.|.++
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~d----------------------------pkNy~AW~~R~wvl~~l~~~~~~~~ 180 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPD----------------------------PKNYHTWAYLHWLYSHFSTLGRISE 180 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSC----------------------------TTCHHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHhccccccch
Confidence 77777666 6 7777777777776542 224455554444444444444
Q ss_pred ----HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC-------hhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHH
Q 044256 180 ----VAIALFDSMARKGFMPDVFSYSVLINGYCKNFN-------VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN 248 (363)
Q Consensus 180 ----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (363)
++++.++++.+..+ -|...|+.....+.+.++ ++++++.+.+++... +-|...|+
T Consensus 181 ~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-------------P~n~SaW~ 246 (349)
T 3q7a_A 181 AQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-------------PHNVSAWN 246 (349)
T ss_dssp HHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-------------TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-------------CCCHHHHH
Confidence 88888888888743 377788887777777765 567777777666554 34667777
Q ss_pred HHHHHHHhcCCH
Q 044256 249 IFIDGLCKNGHV 260 (363)
Q Consensus 249 ~ll~~~~~~~~~ 260 (363)
.+-..+.+.|+.
T Consensus 247 Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 247 YLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHhcCCC
Confidence 766666665543
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=1.9e-06 Score=69.48 Aligned_cols=173 Identities=10% Similarity=-0.004 Sum_probs=122.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhcc
Q 044256 65 LITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN----VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKK 140 (363)
Q Consensus 65 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 140 (363)
.+..+...|++++|...+++..+... ..|+ ...+..+...+...+++++|+..+++..+.......
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~----- 150 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID----- 150 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC-----
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc-----
Confidence 46677889999999999999987431 1222 123445667777778899999998888864221110
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCc-HhHHHHHHHHHHhcCChh
Q 044256 141 TKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK-----GFMPD-VFSYSVLINGYCKNFNVE 214 (363)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~ 214 (363)
..-...+++.+...|...|++++|...|+++.+. +..+. ..++..+...|.+.|+++
T Consensus 151 -----------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 3u3w_A 151 -----------------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHH
Confidence 0001336889999999999999999999988742 11222 347788889999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHhcCCCCC-hHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 044256 215 EAMNVSREMILNGFKKIFNEMKLCNVVPE-TFTCNIFIDGLCKNGH-VLEVMELFPTLEI 272 (363)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~ 272 (363)
+|...+++.+... ...+..+. ..+|..+..++.+.|+ +++|.+.+++...
T Consensus 214 ~A~~~~~~al~~~--------~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 214 ESLYQVNKAIEIS--------CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHH--------HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999998876432 12222222 5678888888999994 6999998888764
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.90 E-value=7.3e-08 Score=73.09 Aligned_cols=159 Identities=11% Similarity=-0.094 Sum_probs=70.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCC-CChHHHHHHHHH
Q 044256 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV-PETFTCNIFIDG 253 (363)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~ 253 (363)
.|++++|.++++.+... .......+..+...+...|++++|...+++..... ...+.. ....++..+...
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQA--------QKSGDHTAEHRALHQVGMV 75 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HTTCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH--------HHcCCcHHHHHHHHHHHHH
Confidence 44555555533332221 11233344444455555555555555554443211 011111 122344445555
Q ss_pred HHhcCCHHHHHHHHHHHHhc----c-Cc-chHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC-ccHHHHHHHHH
Q 044256 254 LCKNGHVLEVMELFPTLEIS----N-CE-LFVEIFNSLIRGCCKFGIFEIASELFNKLSCK----NLV-ADVVAYNILIH 322 (363)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~----~-~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~ 322 (363)
+...|++++|...+++.... + .+ .....+..+...+...|++++|...+++.... +.. .-..++..+..
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 55556666655555554432 1 00 12234455555555566666666655554421 100 01223344555
Q ss_pred HHHccCChhHHHHHHHHHHH
Q 044256 323 ALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 323 ~~~~~g~~~~a~~~~~~m~~ 342 (363)
.+...|++++|...+++..+
T Consensus 156 ~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHH
Confidence 55566666666666655543
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.90 E-value=1.1e-07 Score=65.69 Aligned_cols=116 Identities=16% Similarity=0.063 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 323 (363)
...+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.... +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4677888889999999999999999998775 5667889999999999999999999999998764 4578889999999
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 044256 324 LGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362 (363)
Q Consensus 324 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 362 (363)
+...|++++|...++++.+.. +.+...+..+-..+.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 999999999999999998852 23445555555554443
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.89 E-value=5e-08 Score=67.82 Aligned_cols=114 Identities=11% Similarity=-0.069 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 323 (363)
...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3467777888999999999999999999876 6678999999999999999999999999999875 4578899999999
Q ss_pred HHccCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHH
Q 044256 324 LGKEGQIKKENYLLLSMEENG----CALDVDTFNTLMISF 359 (363)
Q Consensus 324 ~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~ 359 (363)
+...|++++|...|++..+.. -.|+.......+..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 999999999999999998742 117766665555544
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.89 E-value=8.3e-08 Score=70.14 Aligned_cols=131 Identities=8% Similarity=-0.089 Sum_probs=102.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
.+..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 83 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHH
Confidence 45678888889999999999999999988764 4467788889999999999999999999999864 556788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhH--HHHHHHHHhcCCHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTY--TPLLNGYCLVGKVNV 180 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~ 180 (363)
|..+..++...|++++|...|++..+... .+...+ ..+...+...|++++
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 135 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKP----------------------------HDKDAKMKYQECNKIVKQKAFER 135 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST----------------------------TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC----------------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999886522 122233 333344666788888
Q ss_pred HHHHHHHHH
Q 044256 181 AIALFDSMA 189 (363)
Q Consensus 181 a~~~~~~~~ 189 (363)
|...+....
T Consensus 136 A~~~~~~~~ 144 (166)
T 1a17_A 136 AIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHcccchH
Confidence 888877654
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=2.4e-07 Score=74.30 Aligned_cols=100 Identities=12% Similarity=-0.060 Sum_probs=70.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 044256 99 NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178 (363)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (363)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------p~~~~~~~~la~~~~~~~~~ 54 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN----------------------------PLVAVYYTNRALCYLKMQQP 54 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------SCCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CccHHHHHHHHHHHHHhcCH
Confidence 45677788888899999999999999888752 22455666677777777777
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 044256 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227 (363)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (363)
++|+..++...+.. +.+...+..+..++...|++++|...+++....+
T Consensus 55 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 55 EQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777766652 2245566666677777777777777776665543
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=4.3e-08 Score=78.62 Aligned_cols=189 Identities=6% Similarity=-0.109 Sum_probs=127.0
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchh
Q 044256 22 LNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVF 101 (363)
Q Consensus 22 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 101 (363)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++...+.. +.+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~ 73 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVK 73 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHH
Confidence 367888999999999999999999999998873 3367788889999999999999999999999864 55678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch----hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 044256 102 CYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT----LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK 177 (363)
Q Consensus 102 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (363)
.+..+..++...|++++|...|++..+..+.... .........++.. +........+.+......+. .+ ..|+
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~-~l-~~~~ 150 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR-WNSIEERRIHQESELHSYLT-RL-IAAE 150 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHH-HHHHHHTCCCCCCHHHHHHH-HH-HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHH-HH-HHHH
Confidence 8999999999999999999999998765321111 1111111111111 22223333344444444333 23 2688
Q ss_pred HHHHHHHHHHHHHcCCCCcHh-HHHHHHHHHHhc-CChhHHHHHHHHH
Q 044256 178 VNVAIALFDSMARKGFMPDVF-SYSVLINGYCKN-FNVEEAMNVSREM 223 (363)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-~~~~~a~~~~~~~ 223 (363)
.++|.+.++...+. .|+.. ....+-..+.+. +.+++|..+|..+
T Consensus 151 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 151 RERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999888877665 44443 333333333333 5567776666554
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.88 E-value=1.2e-07 Score=66.02 Aligned_cols=117 Identities=11% Similarity=-0.072 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc
Q 044256 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL 277 (363)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 277 (363)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..... +.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 78 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-------------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PA 78 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-cc
Confidence 344455555555666666665555544332 1234455555556666666666666666665543 33
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCC
Q 044256 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329 (363)
Q Consensus 278 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 329 (363)
+...+..+...+...|++++|...|++..... +.+...+..+..++.+.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 45555566666666666666666666655542 2344555555555555544
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.88 E-value=1.4e-07 Score=64.99 Aligned_cols=115 Identities=18% Similarity=0.102 Sum_probs=90.5
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCc
Q 044256 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276 (363)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 276 (363)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.... +
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~ 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P 74 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C
Confidence 4567777888888999999988888776543 2356678888889999999999999999998765 5
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHc
Q 044256 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326 (363)
Q Consensus 277 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 326 (363)
.+..++..+...+...|++++|...++++.... +.+...+..+...+..
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 567888899999999999999999999988764 3456666665555543
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1e-07 Score=75.01 Aligned_cols=131 Identities=11% Similarity=-0.026 Sum_probs=91.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcch--
Q 044256 201 SVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF-- 278 (363)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 278 (363)
..+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--------------p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--------------SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--------------CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--------------CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 345566777888888876666554322 443344455567778888999888888665432 221
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCc--cHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 044256 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA--DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348 (363)
Q Consensus 279 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 348 (363)
...+..+..++...|++++|+..|++.......| ....+.....++.+.|+.++|..+|+++.. ..|+
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 3467778888888899999999888887543214 344666677788888999999999998888 4566
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.87 E-value=3.6e-06 Score=68.47 Aligned_cols=171 Identities=9% Similarity=-0.090 Sum_probs=128.2
Q ss_pred hhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-C-ChhHHHH
Q 044256 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEG-NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT-G-NMNLTLK 80 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~ 80 (363)
.++|+++++.++.. .|.+..+|+.--.++...| .+++++.+++.++... +-+..+|+.-..++.+. + ++++++.
T Consensus 70 se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 70 SERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 46799999999987 7778889999999998888 5999999999999875 44667888887777776 6 8899999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVD--------QTKDLFMEMKDKGINANTLLCKKTKLVEANRLLEL 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 152 (363)
+++.+.+.. +.|..+|+.-...+.+.|.++ ++++.++++.+.
T Consensus 147 ~~~k~L~~d-------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~----------------------- 196 (349)
T 3q7a_A 147 YIHGSLLPD-------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV----------------------- 196 (349)
T ss_dssp HHHHHTSSC-------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-----------------------
Confidence 999999865 667888887666665555444 555555555543
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCh
Q 044256 153 MMQRGLNPVIFTYTPLLNGYCLVGK-------VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNV 213 (363)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 213 (363)
. +-|...|+.....+.+.+. ++++++.+++..... +-|...|+.+-..+.+.|+.
T Consensus 197 ----d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 197 ----D-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp ----C-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred ----C-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 2 3356677777777777665 678888888877763 34777787776666666654
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.87 E-value=8.3e-08 Score=79.09 Aligned_cols=131 Identities=11% Similarity=-0.104 Sum_probs=109.6
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC----------------hHHHHHHHHHHHhcCC
Q 044256 196 DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE----------------TFTCNIFIDGLCKNGH 259 (363)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~ 259 (363)
+...+..+...+.+.|++++|+..|++.+... |+ ...|..+..++.+.|+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--------------p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 211 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--------------EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--------------TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--------------hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567777777888888888888888776653 33 3788899999999999
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHH-HHHHH
Q 044256 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE-NYLLL 338 (363)
Q Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~ 338 (363)
+++|+..++++.+.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|++++| ...|+
T Consensus 212 ~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 212 FSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999886 6678899999999999999999999999999874 45788899999999999999988 45667
Q ss_pred HHHH
Q 044256 339 SMEE 342 (363)
Q Consensus 339 ~m~~ 342 (363)
.|..
T Consensus 290 ~~~~ 293 (336)
T 1p5q_A 290 NMFE 293 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=1.3e-06 Score=70.47 Aligned_cols=177 Identities=9% Similarity=0.010 Sum_probs=122.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 044256 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVN 179 (363)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 179 (363)
...+...+..+...|++++|.+.+++..+....... . ......+..+...+...|+++
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~----------~------------~~~~~~~~~~~~~~~~~~~~~ 132 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE----------F------------QQFLQWQYYVAAYVLKKVDYE 132 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH----------H------------HHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh----------H------------HHHHHHHHHHHHHHhcCCCHH
Confidence 445556677778888888888888777664221100 0 001123344666778889999
Q ss_pred HHHHHHHHHHHcCC---CCc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC--ChHHHHHHHH
Q 044256 180 VAIALFDSMARKGF---MPD--VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP--ETFTCNIFID 252 (363)
Q Consensus 180 ~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~ 252 (363)
+|...+++..+... .+. ..+++.+...|...|++++|...++++.... +. .+..+ ...++..+..
T Consensus 133 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~-----~~---~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL-----EA---LHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HH---SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----Hh---cCccccchHHHHHhHHH
Confidence 99999998875421 111 4478888999999999999999998876321 11 11011 1257888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhccC-----cchHHHHHHHHHHHHhcCChHHH-HHHHHHhh
Q 044256 253 GLCKNGHVLEVMELFPTLEISNC-----ELFVEIFNSLIRGCCKFGIFEIA-SELFNKLS 306 (363)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a-~~~~~~~~ 306 (363)
.|...|++++|+..+++..+... ..-..+|..+..+|...|++++| ...+++..
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999999999999875420 11267788899999999999999 77777765
No 143
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.85 E-value=5.1e-08 Score=65.93 Aligned_cols=104 Identities=11% Similarity=-0.082 Sum_probs=90.3
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC-
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP- 98 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 98 (363)
.|.+...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~ 73 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-------EDE 73 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------CCT
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------ccc
Confidence 45577889999999999999999999999998874 4466788889999999999999999999999864 44
Q ss_pred -chhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCC
Q 044256 99 -NVFCYGSLIDGLCKD-RLVDQTKDLFMEMKDKGI 131 (363)
Q Consensus 99 -~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~ 131 (363)
+...+..+..++.+. |++++|.+.+++......
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 678899999999999 999999999999987644
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.84 E-value=2.5e-08 Score=75.68 Aligned_cols=166 Identities=7% Similarity=-0.120 Sum_probs=117.7
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CcccHHHHHHHHHhcCCh
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF----GCRP-NVTTCDTLITGLRRTGNM 75 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~ 75 (363)
.|++++|.+.++.+... .+....++..+...+...|++++|...+++.... +..| ...++..+...+...|++
T Consensus 5 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp --CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 48899999966666542 3347788999999999999999999999998763 1111 234677888899999999
Q ss_pred hHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHH
Q 044256 76 NLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQ 155 (363)
Q Consensus 76 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 155 (363)
++|...+++..+.....+........++..+...+...|++++|...+++..+.. ..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------~~ 139 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA-----------------------QQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------------------HH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----------------------Hh
Confidence 9999999988775211000001124567888889999999999999998876521 01
Q ss_pred cCCC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 156 RGLN-PVIFTYTPLLNGYCLVGKVNVAIALFDSMARK 191 (363)
Q Consensus 156 ~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (363)
.+.+ .-..++..+...+...|++++|...+++..+.
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1100 11234677788888999999999888876543
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=3.2e-07 Score=74.08 Aligned_cols=171 Identities=10% Similarity=-0.076 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-H----hHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHh
Q 044256 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD-V----FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237 (363)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (363)
..+...+..+...|++++|...+....+...... . ..+..+...+...|++++|+..+++..... ..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~ 147 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ--------LT 147 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTC--------CC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--------hc
Confidence 3455667888899999999999988877532211 1 223345556778899999998887765321 00
Q ss_pred cCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---c-Ccc--hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044256 238 CNVVPE--TFTCNIFIDGLCKNGHVLEVMELFPTLEIS---N-CEL--FVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 238 ~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
...+. ..+++.+...|...|++++|...++++.+. . ..+ ...++..+...|...|++++|...+++.....
T Consensus 148 -~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 148 -GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp -SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11111 347888999999999999999999998732 1 111 22688899999999999999999999887531
Q ss_pred ----CC-ccHHHHHHHHHHHHccCChhHH-HHHHHHHHH
Q 044256 310 ----LV-ADVVAYNILIHALGKEGQIKKE-NYLLLSMEE 342 (363)
Q Consensus 310 ----~~-~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 342 (363)
.. .-..+|..+..+|.+.|++++| ...+++...
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11 1267888899999999999999 777887653
No 146
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=1.2e-07 Score=76.64 Aligned_cols=167 Identities=5% Similarity=-0.106 Sum_probs=119.1
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCc----ccHHHHHHHHHh
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLND----VTFNSLIKGFCMEGNIRDASQLVKKMATFGCR-PNV----TTCDTLITGLRR 71 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l~~~~~~ 71 (363)
.|++++|...++.........++. ..+..+...+...+++++|+..|++....... ++. .+++.+..+|..
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 378999999999998752221121 13445777788888999999999999875322 221 258889999999
Q ss_pred cCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHH
Q 044256 72 TGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLE 151 (363)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 151 (363)
.|++++|...|+++.+.....+...+....++..+...|.+.|++++|...+++..+..
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~--------------------- 226 (293)
T 3u3w_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS--------------------- 226 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------
T ss_pred cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------------------
Confidence 99999999999999853211100012234588899999999999999999999877531
Q ss_pred HHHHcCCCC-chhhHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 044256 152 LMMQRGLNP-VIFTYTPLLNGYCLVGK-VNVAIALFDSMAR 190 (363)
Q Consensus 152 ~~~~~~~~~-~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~ 190 (363)
.+.+..+ -..+|..+..++.+.|+ +++|...+++...
T Consensus 227 --~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 227 --CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp --HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred --HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 1111112 25678888889999994 6999998887654
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=1.4e-07 Score=65.94 Aligned_cols=102 Identities=11% Similarity=0.034 Sum_probs=89.5
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|.++..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~ 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-------PTF 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-------TTC
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCc
Confidence 34478889999999999999999999999998764 3467788889999999999999999999999864 556
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
...+..+..++.+.|++++|...|++..+.
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 788999999999999999999999998865
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.83 E-value=1.3e-07 Score=66.19 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHH
Q 044256 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSRE 222 (363)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (363)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 75 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEE 75 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33344444444444444444444443331 11333333333444444444444443333
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=4.6e-08 Score=70.15 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 322 (363)
+...+..+...+...|++++|+..|+.+.... +.+...|..+..+|...|++++|...|+++.... +.+...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34566777888999999999999999998876 6688899999999999999999999999999874 457788999999
Q ss_pred HHHccCChhHHHHHHHHHHHc
Q 044256 323 ALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 323 ~~~~~g~~~~a~~~~~~m~~~ 343 (363)
++...|++++|...|++.++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999874
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.83 E-value=6e-08 Score=69.04 Aligned_cols=102 Identities=9% Similarity=-0.111 Sum_probs=90.0
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|.+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|+...... +.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~ 85 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-------INE 85 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCC
Confidence 56567788889999999999999999999998874 4467788889999999999999999999999865 566
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
...+..+..++...|++++|...|++..+.
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788899999999999999999999998865
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.80 E-value=1.3e-05 Score=64.99 Aligned_cols=167 Identities=7% Similarity=-0.052 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 044256 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGN----------IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGN 74 (363)
Q Consensus 5 ~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 74 (363)
++|+++++.++.. .|.+..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-..++.+.++
T Consensus 47 ~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc
Confidence 4788888888886 77677788877666655544 678888888888764 4467788887777777774
Q ss_pred --hhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHH
Q 044256 75 --MNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRL-VDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLE 151 (363)
Q Consensus 75 --~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 151 (363)
+++++.+++.+.+.. +.|..+|+.-...+...|. ++++++.++++.+..+
T Consensus 124 ~~~~~EL~~~~k~l~~d-------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-------------------- 176 (331)
T 3dss_A 124 PNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-------------------- 176 (331)
T ss_dssp CCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--------------------
T ss_pred ccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--------------------
Confidence 788999999998875 6778888877777777777 5778888877776533
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 044256 152 LMMQRGLNPVIFTYTPLLNGYCLV--------------GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKN 210 (363)
Q Consensus 152 ~~~~~~~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (363)
-|...|+.....+.+. +.++++++.++...... +-|...|+.+-..+.+.
T Consensus 177 --------~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 177 --------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp --------CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred --------CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 2444555444444333 34678888888777663 33666776555444443
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=5.8e-08 Score=69.13 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 323 (363)
...+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|...|++..... +.++..|..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3456667778889999999999999999876 6688899999999999999999999999999875 5577888899999
Q ss_pred HHccCChhHHHHHHHHHHHc
Q 044256 324 LGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 324 ~~~~g~~~~a~~~~~~m~~~ 343 (363)
+...|++++|...|++.++.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.79 E-value=1.5e-07 Score=65.49 Aligned_cols=108 Identities=9% Similarity=-0.038 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCcc----HHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN--LVAD----VVAYN 318 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~ 318 (363)
..+..+...+.+.|++++|+..|++.++.. |.+...|..+..+|...|++++|++.+++..+.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 467778889999999999999999999876 6678899999999999999999999999987642 1111 24677
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 044256 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTL 355 (363)
Q Consensus 319 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 355 (363)
.+..++...|++++|++.|++.++ ..||..+...|
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 788899999999999999999988 46777766554
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.78 E-value=1.4e-07 Score=65.45 Aligned_cols=99 Identities=7% Similarity=-0.031 Sum_probs=87.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
++..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..++...+.. +.+...
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~ 74 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------PNFVRA 74 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHH
Confidence 56788889999999999999999999998874 4467788999999999999999999999999865 556788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
|..+..++...|++++|...|++..+.
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999999999998865
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=3e-07 Score=62.62 Aligned_cols=105 Identities=9% Similarity=-0.080 Sum_probs=89.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 322 (363)
....+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567778888999999999999999998775 5678889999999999999999999999998874 446888999999
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCHHH
Q 044256 323 ALGKEGQIKKENYLLLSMEENGCALDVDT 351 (363)
Q Consensus 323 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 351 (363)
++...|++++|...+++..+. .|+...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 107 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH--EANNPQ 107 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred HHHHHhhHHHHHHHHHHHHHc--CCCCHH
Confidence 999999999999999999874 455433
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=4.4e-07 Score=63.09 Aligned_cols=117 Identities=15% Similarity=0.009 Sum_probs=97.3
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHH
Q 044256 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 321 (363)
.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..... +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 345677788889999999999999999998775 5578889999999999999999999999998864 45688899999
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 322 HALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
.++...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999852 2355666666665544
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=4.3e-07 Score=66.29 Aligned_cols=102 Identities=7% Similarity=-0.084 Sum_probs=89.8
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+.++..|..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..|++.++.. +.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~ 78 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-------PKY 78 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCC
Confidence 34467789999999999999999999999998874 3467788999999999999999999999999865 556
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
...|..+..++...|++++|...|++..+.
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888999999999999999999999998875
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.72 E-value=2.1e-07 Score=65.58 Aligned_cols=100 Identities=12% Similarity=-0.102 Sum_probs=90.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHH
Q 044256 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 321 (363)
.+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++..... +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 466788889999999999999999999998876 6678899999999999999999999999999875 45788999999
Q ss_pred HHHHccCChhHHHHHHHHHHHc
Q 044256 322 HALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999998874
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.72 E-value=1.3e-06 Score=59.30 Aligned_cols=110 Identities=12% Similarity=-0.075 Sum_probs=78.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCc
Q 044256 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE 276 (363)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 276 (363)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..... +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 69 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-P 69 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-c
Confidence 4456666777777888888887777766543 2355667777777888888888888888887764 4
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHH
Q 044256 277 LFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321 (363)
Q Consensus 277 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 321 (363)
.+...+..+..++...|++++|.+.+++..+.. +.+...+..+.
T Consensus 70 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 70 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 567777888888888888888888888887764 33444444433
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.72 E-value=1.3e-07 Score=65.84 Aligned_cols=106 Identities=9% Similarity=0.018 Sum_probs=83.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
...++..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++..++..+........-..+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 45678889999999999999999999999874 44567889999999999999999999999987541100000001236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
|..+..++...|++++|++.|++....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777788888899999999999888764
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.71 E-value=3.5e-07 Score=61.67 Aligned_cols=99 Identities=10% Similarity=-0.037 Sum_probs=87.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCc--cHHHHHHH
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA--DVVAYNIL 320 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 320 (363)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44567778888999999999999999998875 5677889999999999999999999999999874 44 68889999
Q ss_pred HHHHHcc-CChhHHHHHHHHHHHc
Q 044256 321 IHALGKE-GQIKKENYLLLSMEEN 343 (363)
Q Consensus 321 i~~~~~~-g~~~~a~~~~~~m~~~ 343 (363)
..++... |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 9999999 9999999999999885
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=4.3e-07 Score=63.94 Aligned_cols=102 Identities=6% Similarity=-0.136 Sum_probs=90.2
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|.++..|..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...++...+.. +.+
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~ 76 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQS 76 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------chh
Confidence 44478899999999999999999999999998874 4457788999999999999999999999999865 556
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 100 VFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
...+..+..++...|++++|...|++..+.
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 889999999999999999999999998764
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.69 E-value=9.4e-07 Score=64.48 Aligned_cols=99 Identities=11% Similarity=-0.097 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIH 322 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 322 (363)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45577888889999999999999999999876 6678899999999999999999999999999875 457889999999
Q ss_pred HHHccCChhHHHHHHHHHHHc
Q 044256 323 ALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 323 ~~~~~g~~~~a~~~~~~m~~~ 343 (363)
++...|++++|...|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999885
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.69 E-value=4.8e-07 Score=62.91 Aligned_cols=112 Identities=11% Similarity=0.006 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC--Ccc----HHHH
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL--VAD----VVAY 317 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 317 (363)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++..... .++ ..+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3467778888999999999999999998875 66788899999999999999999999999887531 112 7788
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044256 318 NILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358 (363)
Q Consensus 318 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 358 (363)
..+..++...|++++|...|++..+. .|+......+-..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 88999999999999999999999984 5666555554443
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.68 E-value=4.7e-08 Score=73.99 Aligned_cols=98 Identities=12% Similarity=0.028 Sum_probs=53.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----------------ccHHHHHHHHHhcCChhHHHHHHHHHH
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV----------------TTCDTLITGLRRTGNMNLTLKLHQEMV 86 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 86 (363)
....+..+...+.+.|++++|+..|++..+.. +.+. ..|..+..++...|++++|+..++...
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34556666777777777777777777776542 1111 344444555555555555555555555
Q ss_pred hccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 87 NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 128 (363)
+.. +.+...+..+..++...|++++|...|++..+
T Consensus 116 ~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 116 KID-------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHS-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhC-------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 432 33344455555555555555555555555443
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1e-06 Score=62.82 Aligned_cols=111 Identities=14% Similarity=0.004 Sum_probs=91.9
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcch---HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHH
Q 044256 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF---VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYN 318 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (363)
.+...+..+...+...|++++|...|++..+.. +.+ ...+..+..+|...|++++|...+++..... +.+...|.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 355677888889999999999999999998764 333 6788899999999999999999999998864 44788889
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044256 319 ILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLM 356 (363)
Q Consensus 319 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 356 (363)
.+..++...|++++|...|++..+. .|+.......+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 139 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 9999999999999999999999984 56544443433
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=2.6e-07 Score=63.60 Aligned_cols=99 Identities=12% Similarity=-0.101 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALG 325 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 325 (363)
.+..+...+.+.|++++|+..++++.+.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35556778889999999999999999876 6688899999999999999999999999999875 447888999999999
Q ss_pred ccCChhHHHHHHHHHHHcCCCCC
Q 044256 326 KEGQIKKENYLLLSMEENGCALD 348 (363)
Q Consensus 326 ~~g~~~~a~~~~~~m~~~g~~p~ 348 (363)
..|++++|...+++.++ ..|+
T Consensus 97 ~~g~~~~A~~~~~~al~--~~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL--SQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHH--hCcC
Confidence 99999999999999987 4454
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.4e-05 Score=68.35 Aligned_cols=217 Identities=8% Similarity=-0.046 Sum_probs=145.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 044256 107 IDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFD 186 (363)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 186 (363)
...+.+.|++++|++.|.++.+............+.........+ ..+..+...|...|++++|.+.+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~al~~l~~~y~~~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE-----------TSILELGQLYVTMGAKDKLREFIP 79 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH-----------HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455677889999999998888765443332222222222222111 235678899999999999999998
Q ss_pred HHHHc-CCCCcHh----HHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC-ChHHHHHHHHHHHhcCCH
Q 044256 187 SMARK-GFMPDVF----SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP-ETFTCNIFIDGLCKNGHV 260 (363)
Q Consensus 187 ~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~ 260 (363)
.+... +..++.. +.+.+-..+...|+++.|..++....... ...+..+ -..++..+...+...|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA--------KREKRVFLKHSLSIKLATLHYQKKQY 151 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH--------HHSSCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--------HHhCccHHHHHHHHHHHHHHHHccCh
Confidence 87653 1112221 22233334445789999999888765432 1222222 245778889999999999
Q ss_pred HHHHHHHHHHHhcc-----CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCcc--HHHHHHHHHHHHccCC
Q 044256 261 LEVMELFPTLEISN-----CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK----NLVAD--VVAYNILIHALGKEGQ 329 (363)
Q Consensus 261 ~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~ 329 (363)
++|..+++.+...- -+....++..++..|...|++++|..++++.... +.++. ...+..+...+...|+
T Consensus 152 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 231 (434)
T 4b4t_Q 152 KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD 231 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 99999999876431 1233567889999999999999999999987642 21222 3456666777888999
Q ss_pred hhHHHHHHHHHHH
Q 044256 330 IKKENYLLLSMEE 342 (363)
Q Consensus 330 ~~~a~~~~~~m~~ 342 (363)
+++|...|.+..+
T Consensus 232 y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 232 YKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887764
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.64 E-value=8.5e-07 Score=66.98 Aligned_cols=161 Identities=14% Similarity=0.036 Sum_probs=104.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCC---------
Q 044256 172 YCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVP--------- 242 (363)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 242 (363)
....|+++.+.+.++.-... .......+..+...+...|++++|+..+++.+.... ......
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI--------HTEEWDDQILLDKKK 84 (198)
T ss_dssp --------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT--------TCTTCCCHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh--------cccccchhhHHHHHH
Confidence 33445555555555422211 011334566677778888999999888887765320 000000
Q ss_pred --ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHH
Q 044256 243 --ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320 (363)
Q Consensus 243 --~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (363)
....+..+..++...|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 162 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHH
Confidence 02678888899999999999999999999875 6678899999999999999999999999998864 4467788888
Q ss_pred HHHHHccCChhHHH-HHHHHHHHc
Q 044256 321 IHALGKEGQIKKEN-YLLLSMEEN 343 (363)
Q Consensus 321 i~~~~~~g~~~~a~-~~~~~m~~~ 343 (363)
..++...++.+++. ..+..|...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 163 ELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888877777 566666554
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.64 E-value=6.9e-07 Score=62.10 Aligned_cols=106 Identities=10% Similarity=-0.054 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcch
Q 044256 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELF 278 (363)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 278 (363)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.... +.+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~ 71 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-REN 71 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-ccc
Confidence 34444455555555555555555544332 1234445555555555566666666665555432 111
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHH
Q 044256 279 -------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNIL 320 (363)
Q Consensus 279 -------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (363)
..++..+..++...|++++|.+.|+++.+. .|+...+..+
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 445556666666666666666666666654 2344444433
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.2e-06 Score=74.88 Aligned_cols=201 Identities=5% Similarity=-0.098 Sum_probs=136.5
Q ss_pred hhhhhHHHHHHHHHHcCCCCCc---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcc----c
Q 044256 2 SKVLGALMAFGSFIRRCYRPLN---------------DVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNVT----T 61 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~----~ 61 (363)
|++++|++.|..+.+......+ ..++..+...|...|++++|.+.+..+...- ..++.. +
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 7899999999999886322211 1247889999999999999999999876531 112211 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccC
Q 044256 62 CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKT 141 (363)
Q Consensus 62 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 141 (363)
.+.+...+...|+.+.+..+++........... ...-..++..+...+...|++++|..++++....-...+.
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~------ 170 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR-VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD------ 170 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC-CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc------
Confidence 233334445668899999999887754321110 1222557788999999999999999999988653111110
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCc--HhHHHHHHHHHHhcCChhH
Q 044256 142 KLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARK----GFMPD--VFSYSVLINGYCKNFNVEE 215 (363)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~ 215 (363)
.+....++..++..|...|++++|..+++..... +.++. ...+..+...+...+++++
T Consensus 171 ----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 171 ----------------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp ----------------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred ----------------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 1122457888889999999999999999876543 21222 2345556666778899999
Q ss_pred HHHHHHHHHH
Q 044256 216 AMNVSREMIL 225 (363)
Q Consensus 216 a~~~~~~~~~ 225 (363)
|...+.+...
T Consensus 235 A~~~~~~a~~ 244 (434)
T 4b4t_Q 235 AFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888876643
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.61 E-value=9.6e-07 Score=64.28 Aligned_cols=111 Identities=8% Similarity=-0.046 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------cCcchHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEIS------------------NCELFVEIFNSLIRGCCKFGIFEIASELFNKL 305 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 305 (363)
...+......+.+.|++++|+..|.+.... . +.+..+|..+..+|.+.|++++|...+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD-RKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH-HTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345677788899999999999999998875 2 344578899999999999999999999999
Q ss_pred hhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 044256 306 SCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD-TFNTLMIS 358 (363)
Q Consensus 306 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~ 358 (363)
.... +.+...|..+..++...|++++|...|++.++ +.|+.. .....+..
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKI 140 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 9875 55788999999999999999999999999998 467655 54444433
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.4e-06 Score=60.84 Aligned_cols=97 Identities=10% Similarity=-0.100 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHh
Q 044256 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD----VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKL 237 (363)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (363)
...+..+...+...|+++.|...|+...+. .|+ ...+..+..+|...|++++|...+++.....
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------- 95 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---------- 95 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----------
Confidence 444555555555666666666666655543 344 3344444444455555555554444443322
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044256 238 CNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273 (363)
Q Consensus 238 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 273 (363)
+.+...+..+..++...|++++|...|++....
T Consensus 96 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 96 ---GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ---SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 112334444444444445555555544444433
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.60 E-value=0.00013 Score=59.02 Aligned_cols=233 Identities=9% Similarity=-0.030 Sum_probs=146.2
Q ss_pred hhhHHHHHHHH---HhcCCHH-HHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCC----------hhHHHHHHHHHHhc
Q 044256 24 DVTFNSLIKGF---CMEGNIR-DASQLVKKMATFGCRPN-VTTCDTLITGLRRTGN----------MNLTLKLHQEMVNG 88 (363)
Q Consensus 24 ~~~~~~li~~~---~~~~~~~-~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~ 88 (363)
...|..+...+ .+.|.+. +|+.+++.++..+ |+ ..+|+.--.++...+. +++++.+++.+...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 44455444433 4556654 8999999999864 44 4456655444443333 67889999999886
Q ss_pred cCCCCCccCCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHH
Q 044256 89 MGDFGGIYKPNVFCYGSLIDGLCKDR--LVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYT 166 (363)
Q Consensus 89 ~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (363)
. +.+..+|+.-..++.+.+ .+++++.+++++.+.. +-|-.+|+
T Consensus 104 ~-------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d----------------------------prNy~AW~ 148 (331)
T 3dss_A 104 N-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD----------------------------ERNFHCWD 148 (331)
T ss_dssp C-------TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC----------------------------TTCHHHHH
T ss_pred C-------CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC----------------------------CCCHHHHH
Confidence 5 677888988877777777 4788888888887653 33566777
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc--------------CChhHHHHHHHHHHHhhHHHH
Q 044256 167 PLLNGYCLVGK-VNVAIALFDSMARKGFMPDVFSYSVLINGYCKN--------------FNVEEAMNVSREMILNGFKKI 231 (363)
Q Consensus 167 ~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~ 231 (363)
.-.-.+...|. ++++++.++.+.+..+ -|...|+.....+.+. +.++++++.+.+.+...
T Consensus 149 ~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~---- 223 (331)
T 3dss_A 149 YRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---- 223 (331)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC----
Confidence 76666777787 6899999999988753 3777777766655544 44677777777766654
Q ss_pred HHHhHhcCCCCChHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhccCcchHHHHHHHHH---HHHhcCChHH
Q 044256 232 FNEMKLCNVVPETFTCNIFIDGLCKN-----------GHVLEVMELFPTLEISNCELFVEIFNSLIR---GCCKFGIFEI 297 (363)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~ 297 (363)
+-|...|+.+-..+.+. +.++++++.++++.+.. |-+...+..++. .....|..++
T Consensus 224 ---------P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~ 293 (331)
T 3dss_A 224 ---------PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKE 293 (331)
T ss_dssp ---------TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHH
T ss_pred ---------CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHH
Confidence 34566676555444443 23566666666666553 222222211111 1112344555
Q ss_pred HHHHHHHhhhC
Q 044256 298 ASELFNKLSCK 308 (363)
Q Consensus 298 a~~~~~~~~~~ 308 (363)
+...+.++.+.
T Consensus 294 ~~~~l~~l~~~ 304 (331)
T 3dss_A 294 TLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555554
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.59 E-value=4.7e-07 Score=62.26 Aligned_cols=97 Identities=5% Similarity=-0.126 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHH
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYG 104 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (363)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~~~~ 89 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAVHA 89 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHH
Confidence 346677888999999999999999999874 4467788899999999999999999999999864 55678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 105 SLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
.+..++.+.|++++|...+++..+.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.59 E-value=3.9e-07 Score=78.78 Aligned_cols=115 Identities=8% Similarity=0.004 Sum_probs=94.5
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
.|++++|++.|+++.+. .|.+..+|..+..++.+.|++++|+..+++..+.. +.+..+|..+..++...|++++|.+
T Consensus 19 ~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 19 AKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 47899999999999997 77689999999999999999999999999999874 3456788999999999999999999
Q ss_pred HHHHHHhccCCCCCccCCchhhHHHHHHH--HHhcCCHHHHHHHHHH
Q 044256 81 LHQEMVNGMGDFGGIYKPNVFCYGSLIDG--LCKDRLVDQTKDLFME 125 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~ 125 (363)
.|++..+.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 96 ~~~~al~~~-------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 96 DYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHS-------TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999864 3445566666666 8888999999999883
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.56 E-value=2.9e-07 Score=62.94 Aligned_cols=104 Identities=11% Similarity=0.076 Sum_probs=79.1
Q ss_pred hcCCHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHH
Q 044256 256 KNGHVLEVMELFPTLEISN--CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKE 333 (363)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 333 (363)
..|++++|+..|++..+.+ -+.+..++..+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3588999999999998763 25567788999999999999999999999998874 44688888999999999999999
Q ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHh
Q 044256 334 NYLLLSMEEN-GCALDVDTFNTLMISFL 360 (363)
Q Consensus 334 ~~~~~~m~~~-g~~p~~~~~~~ll~~~~ 360 (363)
...+++.++. .-.|+...|...+..|.
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 9999998875 22334444555555443
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.54 E-value=3.1e-07 Score=62.82 Aligned_cols=88 Identities=11% Similarity=-0.020 Sum_probs=73.4
Q ss_pred ChhhhhHHHHHHHHHHcCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 044256 1 TSKVLGALMAFGSFIRRCY-RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTL 79 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 79 (363)
.|++++|+..|+.+++.+. .|.++.+|..+..++...|++++|+..|++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4789999999999998531 25577889999999999999999999999999874 445678888999999999999999
Q ss_pred HHHHHHHhcc
Q 044256 80 KLHQEMVNGM 89 (363)
Q Consensus 80 ~~~~~~~~~~ 89 (363)
..+++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999998864
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.54 E-value=1.3e-07 Score=81.48 Aligned_cols=147 Identities=7% Similarity=-0.091 Sum_probs=112.1
Q ss_pred hhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----------------cccHHHHHH
Q 044256 4 VLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN----------------VTTCDTLIT 67 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~l~~ 67 (363)
+++|...|+...+. .|.....|..+...+.+.|++++|+..|++.++.. |+ ...|..+..
T Consensus 250 ~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 250 FEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34455555444433 34367789999999999999999999999998763 33 467888999
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHH
Q 044256 68 GLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEAN 147 (363)
Q Consensus 68 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 147 (363)
++.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|++..+..
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~----------------- 381 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN----------------- 381 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------------
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------
Confidence 9999999999999999999865 5578889999999999999999999999988642
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 044256 148 RLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA-LFDSMA 189 (363)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~~~ 189 (363)
+.+...+..+..++.+.++.+++.+ .+..|.
T Consensus 382 -----------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 382 -----------PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2244577778888888888777654 344443
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.53 E-value=3e-06 Score=61.22 Aligned_cols=139 Identities=14% Similarity=-0.034 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---
Q 044256 198 FSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN--- 274 (363)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 274 (363)
.++..+...+...|++++|...+++...... .. ........++..+...+...|++++|...+++.....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-----EF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----Hh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4566677778888888888888887764321 10 0000112467778888999999999999999876542
Q ss_pred -Cc-chHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC-ccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 275 -CE-LFVEIFNSLIRGCCKFGIFEIASELFNKLSCK----NLV-ADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 275 -~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.+ ....++..+...+...|++++|.+.+++.... +.. .....+..+...+...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11 12456788889999999999999999987643 211 12456777888899999999999999988763
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.52 E-value=3.8e-06 Score=58.27 Aligned_cols=100 Identities=16% Similarity=0.033 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCcchH---HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCcc---HHHHHHHH
Q 044256 248 NIFIDGLCKNGHVLEVMELFPTLEISNCELFV---EIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD---VVAYNILI 321 (363)
Q Consensus 248 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li 321 (363)
..+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|+++.... +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 345667888999999999999998764 3334 578888999999999999999999998864 223 67788888
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCHHH
Q 044256 322 HALGKEGQIKKENYLLLSMEENGCALDVDT 351 (363)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 351 (363)
.++...|++++|...|+++.+. .|+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 111 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ--YPGSDA 111 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCChH
Confidence 9999999999999999999985 455443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.52 E-value=2e-06 Score=74.08 Aligned_cols=130 Identities=11% Similarity=-0.119 Sum_probs=105.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC----------------hHHHHHHHHHHHhcCCH
Q 044256 197 VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE----------------TFTCNIFIDGLCKNGHV 260 (363)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~ 260 (363)
...+..+...+.+.|++++|...|++.+... |+ ...|..+..+|.+.|++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--------------p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 333 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--------------EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------------cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 4567777888889999999999998887654 32 46888899999999999
Q ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHH-HHHH
Q 044256 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY-LLLS 339 (363)
Q Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~ 339 (363)
++|+..++++.+.. +.+...|..+..+|...|++++|...|+++.+.. +-+...+..+..++.+.++++++.+ .+..
T Consensus 334 ~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 411 (457)
T 1kt0_A 334 TKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYAN 411 (457)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999886 6678899999999999999999999999999874 4466788888888989998887764 4555
Q ss_pred HHH
Q 044256 340 MEE 342 (363)
Q Consensus 340 m~~ 342 (363)
|..
T Consensus 412 ~f~ 414 (457)
T 1kt0_A 412 MFK 414 (457)
T ss_dssp C--
T ss_pred HHh
Confidence 543
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.49 E-value=3.2e-06 Score=58.65 Aligned_cols=96 Identities=16% Similarity=0.045 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc--
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNV----TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN-- 99 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 99 (363)
.+..+...+...|++++|...|++..+.. |+. ..+..+..++...|++++|...|+.+.+.. +.+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~ 74 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-------PTHDK 74 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-------CCCcc
Confidence 45567778889999999999999998863 443 377788889999999999999999998854 333
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044256 100 -VFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG 130 (363)
Q Consensus 100 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 130 (363)
...+..+..++.+.|++++|...|+++.+..
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5668888899999999999999999988753
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=5.9e-06 Score=59.64 Aligned_cols=139 Identities=15% Similarity=0.010 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhH
Q 044256 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARKGFM-PD----VFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMK 236 (363)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (363)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..... ...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~~- 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA-----RQL- 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHT-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHh-
Confidence 346778888999999999999999887654110 11 2467778888999999999999998876432 111
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----cC-cchHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 237 LCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS----NC-ELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 237 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
.........+..+...+...|++++|...+++.... +. .....++..+...+...|++++|.+.+++..+
T Consensus 83 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 83 -KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 000112456777888899999999999999988654 11 12245678888999999999999999998765
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.42 E-value=9.2e-07 Score=76.49 Aligned_cols=121 Identities=10% Similarity=-0.042 Sum_probs=95.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHH
Q 044256 203 LINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIF 282 (363)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 282 (363)
+...+.+.|++++|...+++.++.. +.+...+..+..++.+.|++++|++.+++..+.. +.+..++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~ 77 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGY 77 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3345667899999999998887654 2357789999999999999999999999999875 6678899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHH--HHccCChhHHHHHHH
Q 044256 283 NSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA--LGKEGQIKKENYLLL 338 (363)
Q Consensus 283 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 338 (363)
..+..+|...|++++|.+.|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 78 ~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 78 YRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999998764 2344555555555 888899999999988
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.41 E-value=3.4e-06 Score=72.65 Aligned_cols=132 Identities=11% Similarity=-0.034 Sum_probs=98.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-----C-CCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC
Q 044256 171 GYCLVGKVNVAIALFDSMARK-----G-FMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243 (363)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (363)
.+...|++++|+.++++..+. | -.| ...+++.|...|...|++++|..++++.+. +.........+..
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~-----i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD-----GYMKLYHHNNAQL 392 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHHSCTTCHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----HHHHHcCCCCHHH
Confidence 355789999999999887653 2 112 345789999999999999999999988753 3444443333444
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----c--CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFPTLEIS-----N--CELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
..+++.|...|...|++++|+.++++.... | .+....+...+-.++...+.+++|..++..+++
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999887643 2 233344556677777788888899888888865
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.41 E-value=1.8e-06 Score=71.15 Aligned_cols=142 Identities=13% Similarity=-0.015 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhhHHHH-HHHh---HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 044256 200 YSVLINGYCKNFNVEEAMNVSREMILNGFKKI-FNEM---KLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275 (363)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 275 (363)
+..+...+.+.|++++|...|++.+....... +... ...........|..+..+|.+.|++++|+..+++..+..
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 260 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE- 260 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 44455555666666666666666554321000 0000 000000011377888899999999999999999998875
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHH-HHccCChhHHHHHHHHHHHc
Q 044256 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA-LGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 276 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~ 343 (363)
+.+...|..+..+|...|++++|...|+++.+.. +-+...+..+... ....+..+++...|.+|...
T Consensus 261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6678899999999999999999999999998763 2345555555554 33456778888999998863
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.39 E-value=2.9e-06 Score=73.09 Aligned_cols=133 Identities=9% Similarity=-0.085 Sum_probs=98.7
Q ss_pred HHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------cCcch
Q 044256 206 GYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-------NCELF 278 (363)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~ 278 (363)
.+...|++++|..++++.+.. .........+....+++.|..+|...|++++|+.++++.... ..+..
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~-----~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEK-----QEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH-----HTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHH-----HHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 356789999999998887542 222222222234568999999999999999999999987643 22334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----CC-Ccc-HHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 279 VEIFNSLIRGCCKFGIFEIASELFNKLSCK-----NL-VAD-VVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 279 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
..+++.|...|...|++++|..++++.... |. -|+ ..+.+.+-.++...+.+++|..+|.++++.
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999987632 31 122 334555667888899999999999999874
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.39 E-value=6.8e-06 Score=68.51 Aligned_cols=134 Identities=10% Similarity=-0.117 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHH----HHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 044256 199 SYSVLINGYCKNFNVEEAMNVSREMILNGFKKI----FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274 (363)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 274 (363)
.+..+...+.+.|++++|+..+++.++...... ...... .-+.+..+|..+..+|.+.|++++|+..++++.+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~-~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK-LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHH-HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 355566667777888888877777664210000 000000 001245678888889999999999999999998875
Q ss_pred CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHH
Q 044256 275 CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335 (363)
Q Consensus 275 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 335 (363)
+.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577888899999999999999999999998864 3467777777777777777776654
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.37 E-value=2.2e-06 Score=60.83 Aligned_cols=98 Identities=9% Similarity=0.027 Sum_probs=81.4
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNI----------RDASQLVKKMATFGCRPNVTTCDTLITGLRR 71 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 71 (363)
+.+++|++.++...+. .|.++..|+.+..++...+++ ++|+..|++.++.. +.+..+|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 5789999999999997 787999999999999988775 59999999999874 3356789999999987
Q ss_pred cC-----------ChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHH
Q 044256 72 TG-----------NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGL 110 (363)
Q Consensus 72 ~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 110 (363)
.| ++++|++.|++.++ +.|+...|...+...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--------l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--------EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--------HCTTCHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--------hCCCCHHHHHHHHHH
Confidence 64 89999999999999 567766665555443
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.37 E-value=2.4e-05 Score=55.62 Aligned_cols=112 Identities=12% Similarity=-0.059 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc------h-----HHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCEL------F-----VEIFNSLIRGCCKFGIFEIASELFNKLSCK----- 308 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 308 (363)
..+......+...|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345666777889999999999999998764210 2 338999999999999999999999999876
Q ss_pred --CCCccHHHH----HHHHHHHHccCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHH
Q 044256 309 --NLVADVVAY----NILIHALGKEGQIKKENYLLLSMEEN-----GCALDVDTFNTLMI 357 (363)
Q Consensus 309 --~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~ 357 (363)
+ +-+...| .....++...|++++|+..|++.++. |+.+........+.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4 3356788 88999999999999999999999763 66666665555544
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.35 E-value=1.7e-05 Score=57.59 Aligned_cols=66 Identities=11% Similarity=-0.078 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
+...|..+..+|.+.|++++|+..+++++... +.+...|..+..+|...|++++|...|++.....
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 34678888999999999999999999999886 6778899999999999999999999999999873
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.31 E-value=1.1e-05 Score=57.44 Aligned_cols=98 Identities=9% Similarity=-0.052 Sum_probs=83.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------c-----ccHHHHHHHHHhcCChhHHHHHHHHHHhc-
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPN--------V-----TTCDTLITGLRRTGNMNLTLKLHQEMVNG- 88 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 88 (363)
....+......+.+.|++++|+..|++.++. .|+ . ..|..+..++.+.|++++|+..++..++.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 3456777888899999999999999999876 344 2 27889999999999999999999999985
Q ss_pred ------cCCCCCccCCchhhH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 89 ------MGDFGGIYKPNVFCY----GSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 89 ------~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
. +.+...| .....++...|++++|+..|++..+.
T Consensus 88 n~~~e~~-------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 88 NRRGELN-------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHCCTT-------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccccCC-------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3 3456778 89999999999999999999998864
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.31 E-value=4.3e-06 Score=56.77 Aligned_cols=82 Identities=10% Similarity=0.016 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 044256 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84 (363)
Q Consensus 5 ~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 84 (363)
+.|+..|+.+.+. .|.++..|..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|+.
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4688899999886 77789999999999999999999999999999874 34567888999999999999999999999
Q ss_pred HHhcc
Q 044256 85 MVNGM 89 (363)
Q Consensus 85 ~~~~~ 89 (363)
..+..
T Consensus 79 al~~~ 83 (115)
T 2kat_A 79 GLAAA 83 (115)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98743
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.29 E-value=1.6e-05 Score=66.34 Aligned_cols=107 Identities=7% Similarity=-0.091 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----------------ccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEI----------------SNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
.+..+...+.+.|++++|+..|++..+ .. +.+..+|..+..+|.+.|++++|...++++.+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 567778889999999999999999886 22 4456788999999999999999999999999875
Q ss_pred CCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 044256 310 LVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV-DTFNTLM 356 (363)
Q Consensus 310 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll 356 (363)
+.+...|..+..+|...|++++|+..|++.++. .|+. ..+..+-
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 457889999999999999999999999999984 5543 3333333
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.25 E-value=3.1e-06 Score=60.02 Aligned_cols=103 Identities=9% Similarity=-0.100 Sum_probs=82.2
Q ss_pred HhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCCh----------HHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 044256 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF----------EIASELFNKLSCKNLVADVVAYNILIHAL 324 (363)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (363)
.+.+.+++|.+.++...+.. |.+...|..+..++...+++ ++|+..|++.++.+ +.+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 35567888999999888876 67788888888888877664 58999999988875 44678888888888
Q ss_pred HccC-----------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 044256 325 GKEG-----------QIKKENYLLLSMEENGCALDVDTFNTLMISFLQ 361 (363)
Q Consensus 325 ~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 361 (363)
...| ++++|++.|++.++ +.|+...|...+....+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHT
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHh
Confidence 8764 89999999999998 68888888877765543
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.24 E-value=6.8e-06 Score=67.70 Aligned_cols=130 Identities=11% Similarity=-0.049 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHh------------------HHHHHHHHHHhcCChhHHHHHHHHHH
Q 044256 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVF------------------SYSVLINGYCKNFNVEEAMNVSREMI 224 (363)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (363)
..+..+...+.+.|+++.|...|++.... .|+.. .|..+..+|.+.|++++|+..+++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34666777788889999999999887765 34432 77888889999999999999999887
Q ss_pred HhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHH-HHhcCChHHHHHHHH
Q 044256 225 LNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRG-CCKFGIFEIASELFN 303 (363)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~ 303 (363)
... +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+... ....+..+.+...|.
T Consensus 258 ~~~-------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 258 TEE-------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHC-------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred HhC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 2456788899999999999999999999998764 4455666666555 334566778888888
Q ss_pred HhhhC
Q 044256 304 KLSCK 308 (363)
Q Consensus 304 ~~~~~ 308 (363)
.+...
T Consensus 324 ~~l~~ 328 (338)
T 2if4_A 324 GIFKG 328 (338)
T ss_dssp -----
T ss_pred HhhCC
Confidence 88765
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.20 E-value=5.8e-05 Score=66.60 Aligned_cols=172 Identities=8% Similarity=-0.065 Sum_probs=129.1
Q ss_pred hhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-
Q 044256 5 LGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGN----------IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG- 73 (363)
Q Consensus 5 ~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~- 73 (363)
++|++.++.+... .|.+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-.-++.+.+
T Consensus 46 eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 5788888888886 77678889888888877777 899999999998875 446778888888888888
Q ss_pred -ChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHH
Q 044256 74 -NMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDR-LVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLE 151 (363)
Q Consensus 74 -~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 151 (363)
+++++++.++.+.+.. +.|..+|+.-..++.+.| .++++++.++++.+..
T Consensus 123 ~~~~~el~~~~k~l~~d-------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--------------------- 174 (567)
T 1dce_A 123 PNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--------------------- 174 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---------------------
T ss_pred ccHHHHHHHHHHHHhhc-------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---------------------
Confidence 6699999999999875 667888888877777777 7778887777776542
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 044256 152 LMMQRGLNPVIFTYTPLLNGYCLV--------------GKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215 (363)
Q Consensus 152 ~~~~~~~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (363)
+-+...|+.....+.+. +.++++.+.++...... +-+...|..+-..+.+.++.++
T Consensus 175 -------p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 175 -------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp -------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred -------CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 23455565555554442 45788888888887763 3366778877777777666443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.18 E-value=2.2e-06 Score=57.62 Aligned_cols=95 Identities=13% Similarity=-0.009 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCcc------HHH
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD------VVA 316 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 316 (363)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..... +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 45567788888999999999999999998875 6678889999999999999999999999998863 223 556
Q ss_pred HHHHHHHHHccCChhHHHHHHHH
Q 044256 317 YNILIHALGKEGQIKKENYLLLS 339 (363)
Q Consensus 317 ~~~li~~~~~~g~~~~a~~~~~~ 339 (363)
+..+..++...|+++.|...+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 66677777777777776655443
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.16 E-value=3.9e-05 Score=53.92 Aligned_cols=112 Identities=11% Similarity=-0.128 Sum_probs=91.1
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Q 044256 211 FNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCC 290 (363)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 290 (363)
+++++|+..|++..+.+ .|+. . +...|...+.+++|++.|++..+.+ ++..+..|...|.
T Consensus 9 ~d~~~A~~~~~~aa~~g-------------~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 68 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-------------EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-------------CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-------------CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 46778887777766543 2333 2 6667777788999999999999876 5667788888888
Q ss_pred h----cCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCC
Q 044256 291 K----FGIFEIASELFNKLSCKNLVADVVAYNILIHALGK----EGQIKKENYLLLSMEENGC 345 (363)
Q Consensus 291 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 345 (363)
. .+++++|.+.|++..+.| ++..+..+...|.. .+++++|.++|++..+.|.
T Consensus 69 ~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 69 NGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7 899999999999999886 67788888888888 8999999999999999764
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.14 E-value=0.00013 Score=51.21 Aligned_cols=111 Identities=10% Similarity=-0.097 Sum_probs=90.4
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCChhH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRR----TGNMNL 77 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 77 (363)
+++++|++.|+...+.| .| + .. +...|...+.+++|++.|++..+.| +...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 57899999999999875 22 3 33 7777778888999999999998864 66778888888887 789999
Q ss_pred HHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 044256 78 TLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCK----DRLVDQTKDLFMEMKDKG 130 (363)
Q Consensus 78 a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 130 (363)
|...|++..+.+ +...+..|...|.. .+++++|...|++..+.|
T Consensus 80 A~~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999998754 46677888888888 788999999998887764
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=0.00044 Score=61.05 Aligned_cols=171 Identities=8% Similarity=-0.049 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--C
Q 044256 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGK----------VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNF--N 212 (363)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 212 (363)
+|++.++.++... +-+..+|+.--.++...|+ ++++...++.+.+.. +-+..+|..-...+.+.+ +
T Consensus 47 eal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 47 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 4455555555443 2334556655555555555 888888888888764 336677777777777888 6
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHh
Q 044256 213 VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG-HVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291 (363)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 291 (363)
++++++.++++.+.+ +-+..+|+.-..++...| ..+++++.+.++++.. +-|..+|+.....+.+
T Consensus 125 ~~~el~~~~k~l~~d-------------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 125 WARELELCARFLEAD-------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc-------------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHh
Confidence 688888888887765 346677777777777777 7888888888888776 5567777776666555
Q ss_pred c--------------CChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhH
Q 044256 292 F--------------GIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKK 332 (363)
Q Consensus 292 ~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 332 (363)
. +.++++.+.++++.... +-|...|..+-..+.+.++.++
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 3 45688888888887764 4467778777777766666443
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=3.2e-05 Score=49.61 Aligned_cols=83 Identities=13% Similarity=0.134 Sum_probs=68.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+.. +.+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~ 79 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEA 79 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCHHH
Confidence 56788999999999999999999999998874 3456788889999999999999999999999854 445667
Q ss_pred HHHHHHHHHhc
Q 044256 103 YGSLIDGLCKD 113 (363)
Q Consensus 103 ~~~ll~~~~~~ 113 (363)
+..+..++.+.
T Consensus 80 ~~~l~~~~~~~ 90 (91)
T 1na3_A 80 KQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77766666543
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.08 E-value=2.2e-05 Score=51.69 Aligned_cols=69 Identities=14% Similarity=0.050 Sum_probs=60.0
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 20 RPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
.|.++.+|..+..++...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 46688999999999999999999999999999875 3456789999999999999999999999988743
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.05 E-value=3e-05 Score=52.46 Aligned_cols=78 Identities=13% Similarity=-0.008 Sum_probs=40.7
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 263 VMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 263 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
|+..|++..+.. +.+...+..+...|...|++++|...|++..... +.+...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455444433 3344555555555555555555555555555442 23444555555555555555555555555544
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=1.8e-05 Score=52.97 Aligned_cols=89 Identities=11% Similarity=-0.027 Sum_probs=69.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc---
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN--- 99 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 99 (363)
+...|..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+.. |+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~ 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--------STAEH 73 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--------SSTTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCccH
Confidence 67789999999999999999999999998874 4467788899999999999999999999999853 43
Q ss_pred ----hhhHHHHHHHHHhcCCHHHHH
Q 044256 100 ----VFCYGSLIDGLCKDRLVDQTK 120 (363)
Q Consensus 100 ----~~~~~~ll~~~~~~~~~~~a~ 120 (363)
...+..+..++...|+.+.|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 344455555555555444443
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.02 E-value=6.7e-05 Score=48.01 Aligned_cols=79 Identities=18% Similarity=0.069 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHAL 324 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (363)
..+..+...+...|++++|...+++..... +.+..++..+..++...|++++|...+++..... +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445555566666666666666666666553 3445566666666666666666666666666542 23444554444444
Q ss_pred H
Q 044256 325 G 325 (363)
Q Consensus 325 ~ 325 (363)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.85 E-value=6.5e-05 Score=49.36 Aligned_cols=65 Identities=14% Similarity=0.121 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
+...+..+..++...|++++|+..|+++.+.. +.+...|..+..+|...|++++|.+.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667777778888888888888888887765 556677788888888888888888888877643
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.61 E-value=0.00029 Score=59.70 Aligned_cols=94 Identities=5% Similarity=-0.155 Sum_probs=62.9
Q ss_pred hcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----c--CcchHHH
Q 044256 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS-----N--CELFVEI 281 (363)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~ 281 (363)
..|++++|+.++++.+.. .........+....+++.+..+|...|++++|+.++++.... | .+....+
T Consensus 310 ~~g~~~eA~~~~~~~L~i-----~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 310 HYKSPSELLEICELSQEK-----MSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp TTSCHHHHHHHHHHHHHH-----HTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH-----hhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 357788888887776532 222222222223467888888888888888888888887543 1 2233456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 282 FNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 282 ~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
++.|...|...|++++|..++++..+
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 77888888888888888888877653
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.60 E-value=0.00076 Score=57.21 Aligned_cols=99 Identities=7% Similarity=-0.077 Sum_probs=75.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC---CCC----cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCC
Q 044256 169 LNGYCLVGKVNVAIALFDSMARKG---FMP----DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV 241 (363)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (363)
+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++++. ++........+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~-----i~~~~lg~~Hp 368 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME-----PYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHHHHSCSSCH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-----hHHHHcCCCCh
Confidence 455667899999999999887541 122 345788899999999999999999998753 34444333333
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044256 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEI 272 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (363)
....+++.|...|...|++++|+.++++..+
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999988764
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.58 E-value=0.00035 Score=59.22 Aligned_cols=94 Identities=4% Similarity=-0.163 Sum_probs=72.4
Q ss_pred hcCCHHHHHHHHHHHHHc-----C-CCC-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHH
Q 044256 174 LVGKVNVAIALFDSMARK-----G-FMP-DVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFT 246 (363)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (363)
..|++++|+.++++..+. | -.| ...+++.|..+|...|++++|..++++.+. ++........+....+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~-----i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK-----PYSKHYPVYSLNVASM 384 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHHSCSSCHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-----HHHHHcCCCChHHHHH
Confidence 357899999999887653 2 112 246788999999999999999999998863 3444443333344567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044256 247 CNIFIDGLCKNGHVLEVMELFPTLEI 272 (363)
Q Consensus 247 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (363)
++.|...|...|++++|+.++++..+
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.56 E-value=0.0034 Score=51.26 Aligned_cols=74 Identities=11% Similarity=0.010 Sum_probs=54.6
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHH
Q 044256 276 ELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFN 353 (363)
Q Consensus 276 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 353 (363)
+.++.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...|++... +.|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 5566777777666666788888888888888774 6766666666777778888888888888777 467776654
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.50 E-value=0.0012 Score=46.23 Aligned_cols=92 Identities=9% Similarity=-0.061 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcC---ChHHHHHHHHHhhhCCCCc--cHHHHHHHHHHHHccCChhHHH
Q 044256 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFG---IFEIASELFNKLSCKNLVA--DVVAYNILIHALGKEGQIKKEN 334 (363)
Q Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 334 (363)
...+.+.|.+....+ +++..+...+..++++.+ +++++..+++...+.+ .| +...+..+..++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345555555555555 456667777777777776 5557777777777653 23 3455555666777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHH
Q 044256 335 YLLLSMEENGCALDVDTFNTL 355 (363)
Q Consensus 335 ~~~~~m~~~g~~p~~~~~~~l 355 (363)
+.++.+++ +.|+..--..|
T Consensus 92 ~y~~~lL~--ieP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHh--cCCCCHHHHHH
Confidence 77777777 56654433333
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.47 E-value=0.00091 Score=56.71 Aligned_cols=105 Identities=9% Similarity=-0.011 Sum_probs=77.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCC-CCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChH
Q 044256 66 ITGLRRTGNMNLTLKLHQEMVNGMGD-FGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLV 144 (363)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (363)
+..+.+.|++++|+.++++..+.... ++...+....+++.+..+|...|++++|+.++++.+..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i--------------- 358 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP--------------- 358 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---------------
Confidence 44566788999999999999875422 22223334678999999999999999999999887642
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 145 EANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMAR 190 (363)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 190 (363)
++.......+....+++.|...|...|++++|+.++++..+
T Consensus 359 -----~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 359 -----YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp -----HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33333232233357788899999999999999999987654
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.37 E-value=0.00028 Score=45.98 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 30 LIKGFCMEGNIRDASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 30 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
....+.+.|++++|+..|++..+.. +.+.. .|..+..++...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455667777777777777777653 23445 66667777777777777777777777643
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.37 E-value=0.00053 Score=44.62 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=49.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCcchHH-HHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044256 250 FIDGLCKNGHVLEVMELFPTLEISNCELFVE-IFNSLIRGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 250 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
....+...|++++|...++++.+.. +.+.. .+..+..+|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456778899999999999988775 55667 88888899999999999999999988764
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.37 E-value=0.0024 Score=52.18 Aligned_cols=138 Identities=10% Similarity=-0.055 Sum_probs=86.2
Q ss_pred CCCchhhHHHHHHHHHh--c---CCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHh----cCC----hhHHHHHHHHH
Q 044256 20 RPLNDVTFNSLIKGFCM--E---GNIRDASQLVKKMATFGCRPN-VTTCDTLITGLRR----TGN----MNLTLKLHQEM 85 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~----~~~----~~~a~~~~~~~ 85 (363)
.|.+..+|...+++... . .+..+|+.+|++.++. .|+ ...|..+..++.. ... .......++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 45588888888876543 2 3457899999999887 555 3344443333321 111 11111222222
Q ss_pred HhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch------hhhccCChHHHHHHHHHHHHcCCC
Q 044256 86 VNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT------LLCKKTKLVEANRLLELMMQRGLN 159 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~~~ 159 (363)
..... -+.+..+|..+...+...|+++.|...+++....+..... .+.-.|++++|.+.+++....+
T Consensus 268 ~a~~~-----~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~-- 340 (372)
T 3ly7_A 268 VTLPE-----LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR-- 340 (372)
T ss_dssp HTCGG-----GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred Hhccc-----CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--
Confidence 22110 3566778888877777789999999999999887632211 4557899999999999888874
Q ss_pred CchhhHH
Q 044256 160 PVIFTYT 166 (363)
Q Consensus 160 ~~~~~~~ 166 (363)
|...+|.
T Consensus 341 P~~~t~~ 347 (372)
T 3ly7_A 341 PGANTLY 347 (372)
T ss_dssp CSHHHHH
T ss_pred CCcChHH
Confidence 5555553
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.28 E-value=0.0024 Score=40.96 Aligned_cols=66 Identities=11% Similarity=-0.139 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 242 PETFTCNIFIDGLCKNGH---VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
.+...+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555543333 466666666666554 445556666666666666666666666666654
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.24 E-value=0.0035 Score=40.18 Aligned_cols=69 Identities=4% Similarity=0.004 Sum_probs=56.8
Q ss_pred CCCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 20 RPLNDVTFNSLIKGFCMEGN---IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
.|.++..+..+..++...++ .++|..++++.++.. +-+......+...+.+.|++++|+..|+.+.+..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 35588889999988865555 789999999999874 4456677888889999999999999999999854
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.93 E-value=0.0092 Score=46.76 Aligned_cols=104 Identities=11% Similarity=0.041 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHh-----cCChhHHHHHHHHHHhccCCCCCccCC--chhhHHHHHHH
Q 044256 40 IRDASQLVKKMATFGCRPN---VTTCDTLITGLRR-----TGNMNLTLKLHQEMVNGMGDFGGIYKP--NVFCYGSLIDG 109 (363)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~ 109 (363)
...|...+++.++. .|+ -..|..+...|.. .|+.++|.+.|++.++. .| +..++......
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~v~YA~~ 248 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHHHHHHHH
Confidence 56777888888876 566 4578889999988 49999999999999994 45 37888888888
Q ss_pred HHhc-CCHHHHHHHHHHHHHcCCC--cchhhhccCChHHHHHHHHHH
Q 044256 110 LCKD-RLVDQTKDLFMEMKDKGIN--ANTLLCKKTKLVEANRLLELM 153 (363)
Q Consensus 110 ~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~ 153 (363)
+++. |+.+.+.+.+++.....+. |+..+...+.-++|..+++++
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHV 295 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTH
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHh
Confidence 8885 9999999999999988766 555555555555665555543
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.046 Score=50.65 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=27.1
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 69 LRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMK 127 (363)
Q Consensus 69 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 127 (363)
....|+++.|.++.+. ..+...|..+...+.+.++++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD------------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTT------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHh------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3455666666555321 2334566666666666666666666666543
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.87 E-value=0.022 Score=52.83 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 044256 104 GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIA 183 (363)
Q Consensus 104 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 183 (363)
..++..+.+.|.++.|+++.+.-... -......|+++.|.++.+.+ .+...|..+...+.+.++++.|++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~~----f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQK----FELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHHH----HHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcchh----eehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHH
Confidence 67777778888888877665322110 01233455555555543221 234556666666666666666666
Q ss_pred HHHHHH
Q 044256 184 LFDSMA 189 (363)
Q Consensus 184 ~~~~~~ 189 (363)
.|..+.
T Consensus 703 ~y~~~~ 708 (814)
T 3mkq_A 703 AFTNAH 708 (814)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 665543
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.85 E-value=0.013 Score=38.46 Aligned_cols=66 Identities=12% Similarity=-0.067 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc------CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEISN------CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
+...+..+...+...|++..|...|+...+.. -.+...++..|..++.+.|+++.|...++++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556677788888888888888888876541 1345677788888888888888888888888765
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.81 E-value=0.019 Score=40.31 Aligned_cols=83 Identities=16% Similarity=0.055 Sum_probs=66.8
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CcccHHHHHHHHHhcCChhH
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEG---NIRDASQLVKKMATFGCRP--NVTTCDTLITGLRRTGNMNL 77 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 77 (363)
....+.+.|....+.+. + +..+...+..++++.+ ++++++.+|+...+.. .| +...+-.|.-++.+.+++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~-~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-V-SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-C-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-C-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 35567777777766543 4 8899999999999988 6779999999998874 34 35566667788899999999
Q ss_pred HHHHHHHHHhc
Q 044256 78 TLKLHQEMVNG 88 (363)
Q Consensus 78 a~~~~~~~~~~ 88 (363)
|.+.++.+.+.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999994
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.80 E-value=0.023 Score=39.36 Aligned_cols=107 Identities=11% Similarity=-0.015 Sum_probs=78.8
Q ss_pred CCCchhhHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCCCcc-cHHHHHHHH------HhcCChhHHHHHHHHHH
Q 044256 20 RPLNDVTFNSLIKGFCMEGNI------RDASQLVKKMATFGCRPNVT-TCDTLITGL------RRTGNMNLTLKLHQEMV 86 (363)
Q Consensus 20 ~p~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~------~~~~~~~~a~~~~~~~~ 86 (363)
.|.|.++|-..+...-+.|++ ++..++|++.... ++|+.. .|...+..+ ...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 577999999999999999999 8999999998875 466532 222222221 23478999999999998
Q ss_pred hccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 044256 87 NGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134 (363)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 134 (363)
+... .- ..+|......-.+.|++..|.+++......+..|.
T Consensus 88 ~~hK------kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 88 ANCK------KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCT------TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHhH------HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 7531 22 66777777777889999999999998887665544
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.047 Score=39.33 Aligned_cols=96 Identities=19% Similarity=0.212 Sum_probs=64.9
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
|+++.|.++.+.+ . +...|..|.+.....|+++-|.+.|.+... +..+.-.|.-.|+.+...++
T Consensus 19 g~l~~A~e~a~~l------~-~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 19 GNLDAALDEAKKL------N-DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp TCHHHHHHHHHHH------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHh------C-CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 5667777765544 1 667788888888888888888888877552 44555566667777666666
Q ss_pred HHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044256 82 HQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFME 125 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 125 (363)
-+.....+ -++....++...|+++++.++|.+
T Consensus 83 a~iA~~~g------------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTRE------------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTT------------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCc------------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555443 355556666777888888877754
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.74 E-value=0.014 Score=38.31 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=55.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFG------CRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 88 (363)
++..+..+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 67778899999999999999999999987641 1234557888999999999999999999999984
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.74 E-value=0.031 Score=43.89 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=70.7
Q ss_pred hhhhHHHHHHHHHHcCCCCC--chhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-CC
Q 044256 3 KVLGALMAFGSFIRRCYRPL--NDVTFNSLIKGFCME-----GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT-GN 74 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-~~ 74 (363)
....|..+++++++. .|. +...|..+...|.+. |+.++|.+.|++.++.+..-+..++......+++. |+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 467888999999987 773 467899999999994 99999999999999974222477788888888884 99
Q ss_pred hhHHHHHHHHHHhcc
Q 044256 75 MNLTLKLHQEMVNGM 89 (363)
Q Consensus 75 ~~~a~~~~~~~~~~~ 89 (363)
.+++.+.+++.....
T Consensus 256 ~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 256 RAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999865
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.73 E-value=0.033 Score=37.52 Aligned_cols=88 Identities=8% Similarity=-0.082 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHH---HHHHHHHhhhCCCCc--cHHHHHHHHHHHHccCChhH
Q 044256 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEI---ASELFNKLSCKNLVA--DVVAYNILIHALGKEGQIKK 332 (363)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 332 (363)
..+..+.+-|......+ .++..+-..+..++++..+... ++.+++.+...+ .| .......+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34455555565555545 4666676777777777776555 777777777654 23 33344455567788888888
Q ss_pred HHHHHHHHHHcCCCCCH
Q 044256 333 ENYLLLSMEENGCALDV 349 (363)
Q Consensus 333 a~~~~~~m~~~g~~p~~ 349 (363)
|.+.++.+++ +.|+.
T Consensus 93 A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHH--hCCCC
Confidence 8888888887 46654
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.092 Score=37.85 Aligned_cols=110 Identities=12% Similarity=0.037 Sum_probs=71.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCC
Q 044256 161 VIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNV 240 (363)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 240 (363)
+...|..|.......|+++-|++.|....+ +..+.-.|...|+.+....+-+.....+
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------------- 90 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------------- 90 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCc-------------
Confidence 456899999999999999999999987654 4445555666777766654433333222
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 044256 241 VPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306 (363)
Q Consensus 241 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 306 (363)
-++.....+...|+++++.++|.+.-+ .|... ......|-.+.|.++.+++-
T Consensus 91 -----~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 91 -----DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred -----cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 245555666778999999999865432 22111 11123566777888877653
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.50 E-value=9.6e-06 Score=67.60 Aligned_cols=257 Identities=12% Similarity=0.108 Sum_probs=161.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
.+..|..|..+....+++.+|++-|=+ .-|...|..++.+..+.|.+++-...+...++. ..++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--------~ke~~I 118 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--------ARESYV 118 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--------CCSTTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------hccccc
Confidence 567899999999999988888876622 236667889999999999999999988877663 445566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcch--------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANT--------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCL 174 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (363)
=+.|+-+|++.++..+..+++. .|+. -+...|.++.|.-+|. +..-|.-|...+.+
T Consensus 119 DteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys---------~isN~akLAstLV~ 182 (624)
T 3lvg_A 119 ETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN---------NVSNFGRLASTLVH 182 (624)
T ss_dssp THHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGG---------GSCCCTTTSSSSSS
T ss_pred HHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHH---------hCccHHHHHHHHHH
Confidence 7789999999988765333221 1111 1222222222222221 11122233333444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHH
Q 044256 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254 (363)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 254 (363)
.|++..|.+.- ++ ..++.||..+-.+|...+++.-|.-.--.++ ........++..|
T Consensus 183 L~~yq~AVdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniI-----------------vhadeL~elv~~Y 239 (624)
T 3lvg_A 183 LGEYQAAVDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----------------VHADELEELINYY 239 (624)
T ss_dssp CSGGGSSTTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----------------CCSSCCSGGGSSS
T ss_pred HHHHHHHHHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhc-----------------ccHHHHHHHHHHH
Confidence 44444443321 11 2477899999999999999888753322221 2222344567778
Q ss_pred HhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCc------cHHHHHHHHHHHHcc
Q 044256 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK-NLVA------DVVAYNILIHALGKE 327 (363)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~ 327 (363)
-..|.+++.+.+++...... .....+|+-|.-.|++- ++++..+.++..-++ +++. ....|.-++-.|.+-
T Consensus 240 E~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 240 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp STTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 88999999999999887544 56788899998888876 566666655543322 2221 233466666666666
Q ss_pred CChhHHH
Q 044256 328 GQIKKEN 334 (363)
Q Consensus 328 g~~~~a~ 334 (363)
.++|.|.
T Consensus 318 dE~DnA~ 324 (624)
T 3lvg_A 318 EEYDNAI 324 (624)
T ss_dssp TCHHHHH
T ss_pred hhHHHHH
Confidence 6666554
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.49 E-value=0.1 Score=35.42 Aligned_cols=65 Identities=18% Similarity=0.085 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNL 310 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 310 (363)
..+...++.....|..++-.+++..+.... +|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455555666666666666666644332 55566666666666666666666666666666653
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.43 E-value=0.043 Score=38.04 Aligned_cols=113 Identities=12% Similarity=-0.005 Sum_probs=79.4
Q ss_pred CChHHHHHHHHHHHhcCCH------HHHHHHHHHHHhccCcchHH-HHHHHHH------HHHhcCChHHHHHHHHHhhhC
Q 044256 242 PETFTCNIFIDGLCKNGHV------LEVMELFPTLEISNCELFVE-IFNSLIR------GCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~~~~~~a~~~~~~~~~~ 308 (363)
.|..+|-..+...-+.|++ ++..++|++.... +||+.. .|...|. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4566777777777777888 8888999988764 466531 1111111 113448999999999999765
Q ss_pred CCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044256 309 NLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMI 357 (363)
Q Consensus 309 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 357 (363)
+-.. ...|......-.+.|+.+.|.+++.+.+..+-+| ...+...|+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 3333 8888888888889999999999999999876444 444444443
No 234
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.78 E-value=0.19 Score=31.98 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 044256 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-...+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555543
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.34 E-value=0.11 Score=43.44 Aligned_cols=70 Identities=9% Similarity=0.036 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCccHHH
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC-----KNLVADVVA 316 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 316 (363)
+...++..+...|++.++...+..+.... |.+...+..++.++.+.|+..+|.+.|+...+ .|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44455666667777777777777766554 56666777777777777777777777776543 366665554
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.21 E-value=0.29 Score=33.01 Aligned_cols=85 Identities=11% Similarity=-0.046 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhH---HHHHHHHHHhccCCCCCccCC--chhhHHHHHHHHH
Q 044256 37 EGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNL---TLKLHQEMVNGMGDFGGIYKP--NVFCYGSLIDGLC 111 (363)
Q Consensus 37 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~ 111 (363)
......+.+-|......| .|+..+-..+..+++++.+... ++.+++.+...+ .| .....-.|.-++.
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-------~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHH
Confidence 334445555555555544 3566655566666666665554 667777766543 22 3344455666777
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 044256 112 KDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~ 129 (363)
+.|++++|.+.++.+++.
T Consensus 86 klg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHh
Confidence 777777777777777764
No 237
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.95 E-value=0.44 Score=32.24 Aligned_cols=69 Identities=10% Similarity=0.033 Sum_probs=50.7
Q ss_pred HHhcC-ChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044256 289 CCKFG-IFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358 (363)
Q Consensus 289 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 358 (363)
+.+.. |.-+..+-++.+...++.|++......+++|.+.+|+..|.++|+-...+ +.+....|..+++-
T Consensus 62 F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 62 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 33444 55567777778888888888888888888888888888888888888765 34445557666654
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.59 Score=42.45 Aligned_cols=134 Identities=15% Similarity=0.032 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCcHhHH--HHHHHHHHhcC-ChhHHHHHHHHHHHhhHHHHHHHhHhcCCC
Q 044256 166 TPLLNGYCLVGK-VNVAIALFDSMARKGFMPDVFSY--SVLINGYCKNF-NVEEAMNVSREMILNGFKKIFNEMKLCNVV 241 (363)
Q Consensus 166 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (363)
..++..+...++ ++.|..+|+.+... .|....+ ..++..+...+ +--+|.+++.+.++. +..........
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~----~~~~~~~l~~~ 325 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDP----LLSLLNDLPPR 325 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----HHHHHHTCSSC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hhhhhhhhccc
Confidence 344454545555 68899999999887 3433332 23333333332 233455555554432 11111111101
Q ss_pred C---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 044256 242 P---------ETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306 (363)
Q Consensus 242 ~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 306 (363)
. +......=.+.|...|+++-|+++-++..... |.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 326 ~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 326 DADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0 01112222345667899999999999998774 6678899999999999999999999998874
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.74 E-value=0.17 Score=42.21 Aligned_cols=73 Identities=8% Similarity=-0.079 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCCCHHHHHH
Q 044256 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEE-----NGCALDVDTFNT 354 (363)
Q Consensus 281 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 354 (363)
+...++..+...|++.+|...+..+.... +.+...|..++.++.+.|+..+|++.|+++.+ .|+.|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34556777888899999998888887764 56888999999999999999999999888754 389998776443
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.57 E-value=3 Score=38.95 Aligned_cols=218 Identities=11% Similarity=-0.019 Sum_probs=120.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--C-----cch--------hhhccCC-hHHHHHHHHHHHHcCCCCchhhHH--
Q 044256 105 SLIDGLCKDRLVDQTKDLFMEMKDKGI--N-----ANT--------LLCKKTK-LVEANRLLELMMQRGLNPVIFTYT-- 166 (363)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~--------~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~-- 166 (363)
.+.-+....|..+++..++.......- . +.. .+.-.|. -+++...+..++...- +......
T Consensus 416 llaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~Aal 494 (963)
T 4ady_A 416 LYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAAL 494 (963)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHH
Confidence 344445566666677777776654321 0 100 1222222 2455566665554321 1111112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHH--HHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCCh
Q 044256 167 PLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLI--NGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPET 244 (363)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (363)
+|...+...|+.+....++..+.+.. +......+. -++.-.|+.+.+..+++.+.... .|.
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-------------dp~- 557 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-------------ESL- 557 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-------------CHH-
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-------------CHH-
Confidence 23344556788888888888776542 222333333 34446788888876666554321 122
Q ss_pred HHHH---HHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHH
Q 044256 245 FTCN---IFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILI 321 (363)
Q Consensus 245 ~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 321 (363)
.-|. ++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+...+ .|....-..+.
T Consensus 558 vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalA 635 (963)
T 4ady_A 558 LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFA 635 (963)
T ss_dssp HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 2232 33456778889877777998887653 3444444445555666788777888887776654 45555444444
Q ss_pred HHHHccCCh-hHHHHHHHHHHH
Q 044256 322 HALGKEGQI-KKENYLLLSMEE 342 (363)
Q Consensus 322 ~~~~~~g~~-~~a~~~~~~m~~ 342 (363)
-+....|.. .++..++..+..
T Consensus 636 LGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 636 LGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhccCCCcHHHHHHHHHHcc
Confidence 455555554 467777777764
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.96 Score=41.14 Aligned_cols=126 Identities=13% Similarity=0.041 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHH--HHHHHHHhcC-CHHHHHHHHHHHHhc---
Q 044256 201 SVLINGYCKNFN-VEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCN--IFIDGLCKNG-HVLEVMELFPTLEIS--- 273 (363)
Q Consensus 201 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~-~~~~a~~~~~~~~~~--- 273 (363)
..++..+...++ .+.|..+++++...+ |....+- .++..+...+ +--+|.+++.+..+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--------------p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~ 317 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--------------PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLS 317 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--------------GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--------------CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Confidence 445555555666 577988888877654 5433322 2333333333 233555555554421
Q ss_pred ---cCcch-----------HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHH
Q 044256 274 ---NCELF-----------VEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339 (363)
Q Consensus 274 ---~~~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 339 (363)
..++. ......-...|...|+++-|+++-++....- +-+-.+|..|..+|...|+++.|+-.++.
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 318 LLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 11111 1122222344667899999999999998763 56799999999999999999999999998
Q ss_pred HH
Q 044256 340 ME 341 (363)
Q Consensus 340 m~ 341 (363)
+.
T Consensus 397 cP 398 (754)
T 4gns_B 397 MP 398 (754)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.16 E-value=0.00097 Score=55.99 Aligned_cols=240 Identities=12% Similarity=0.009 Sum_probs=160.0
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCC
Q 044256 19 YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKP 98 (363)
Q Consensus 19 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 98 (363)
++..|+..|..+|.+..+.|.+++-+..+...++..- +...=+.|+-+|++.++..+-.+++ ..|
T Consensus 78 IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl-------------~~~ 142 (624)
T 3lvg_A 78 IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-------------NGP 142 (624)
T ss_dssp CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT-------------SCC
T ss_pred HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH-------------cCC
Confidence 4445788999999999999999999998877665533 3444568999999999877654432 367
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 044256 99 NVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKV 178 (363)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (363)
|..-...+..-|...|.++.|.-+|..+..- -.....+...|++..|.+.-.+ ..++.||..+-.+|...+.+
T Consensus 143 N~A~iq~VGDrcf~e~lYeAAKilys~isN~-akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~Ef 215 (624)
T 3lvg_A 143 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF-GRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEF 215 (624)
T ss_dssp SSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC-TTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTT
T ss_pred CcccHHHHHHHHHHccCHHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHH
Confidence 7878888899999999999888777654321 2222356677777766543221 34678999999999999998
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcC
Q 044256 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNG 258 (363)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 258 (363)
..|.-.--.+.-+. .-...++..|-+.|.+++-+.+++..+... +.....|+-|.-.|++-
T Consensus 216 rLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglE-------------rAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 216 RLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLE-------------RAHMGMFTELAILYSKF- 276 (624)
T ss_dssp TTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-------------TCCHHHHHHHHHHHHSS-
T ss_pred HHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-------------chhHHHHHHHHHHHHhc-
Confidence 88776655544331 123345666888899998887777654221 34566777777777665
Q ss_pred CHHHHHHHHHHHHhc-cCcc------hHHHHHHHHHHHHhcCChHHHH
Q 044256 259 HVLEVMELFPTLEIS-NCEL------FVEIFNSLIRGCCKFGIFEIAS 299 (363)
Q Consensus 259 ~~~~a~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~~~~~~a~ 299 (363)
++++..+.++..-.+ +++. ....|.-++-.|.+-.+++.|.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 456665555543221 2211 2334666666666666666554
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.71 E-value=1.1 Score=30.62 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 044256 278 FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCA 346 (363)
Q Consensus 278 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 346 (363)
+...+...+..+...|.-++-.+++..+... .+|++.....+..||.+.|+..+|.+++.+.-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3455677788889999999999999996553 3788999999999999999999999999999999875
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.50 E-value=0.89 Score=29.02 Aligned_cols=63 Identities=11% Similarity=0.229 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHH
Q 044256 39 NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108 (363)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 108 (363)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.++..- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-------~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-------cCchhhHHHHHH
Confidence 455677778888888889999999999999999999999999999888753 344556776664
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.89 E-value=1.5 Score=29.79 Aligned_cols=73 Identities=8% Similarity=-0.059 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHHHHhcCC---hHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH
Q 044256 276 ELFVEIFNSLIRGCCKFGI---FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD 350 (363)
Q Consensus 276 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 350 (363)
.|+..+--.+..++++..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 4555555555666665554 345666777666554112344455555677777777777777777776 456544
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.42 E-value=4.6 Score=34.36 Aligned_cols=123 Identities=8% Similarity=0.097 Sum_probs=69.1
Q ss_pred hhhhhHHHHHHHHHHcC----CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCcccHHHHHHHH----Hhc
Q 044256 2 SKVLGALMAFGSFIRRC----YRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF-GCRPNVTTCDTLITGL----RRT 72 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~----~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~----~~~ 72 (363)
|+++.|++.+-.+.+.. -.+.+......++..|...|+++...+.+..+.+. |..+. ....+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 57788888776665421 22335677888999999999999998887766543 32222 222333322 223
Q ss_pred CChhHHHHHHHHHHhccCC-CCCccCC---chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 73 GNMNLTLKLHQEMVNGMGD-FGGIYKP---NVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 73 ~~~~~a~~~~~~~~~~~~~-~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 128 (363)
...+.... ....+.-.. .++.+-. .......|...+...|++.+|.+++.++..
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~ 165 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV 165 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33222111 111111100 0000111 123345677888889999999999988864
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.23 E-value=7 Score=37.96 Aligned_cols=143 Identities=10% Similarity=-0.069 Sum_probs=86.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCCh
Q 044256 64 TLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKL 143 (363)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 143 (363)
.++..+...+..+.+.++..- .+.+...--.+..++...|++++|.+.|++... ++...... ....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l--~~~~ 882 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQ--FAVL 882 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCS--CSSH
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchh--hhhh
Confidence 455556666777666654322 234444445667888999999999999987532 12111100 0001
Q ss_pred HHHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCChhHHH
Q 044256 144 VEANRLLELMMQRGL--NPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPD----VFSYSVLINGYCKNFNVEEAM 217 (363)
Q Consensus 144 ~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~ 217 (363)
. -+..+..... ..-..-|..++..+.+.+.++.+.++-....+...+.+ ...|..+.+++...|++++|.
T Consensus 883 ~----~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 R----EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp H----HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred c----ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 1 1112222111 11223577788889999999999988776665422112 125788899999999999998
Q ss_pred HHHHHHH
Q 044256 218 NVSREMI 224 (363)
Q Consensus 218 ~~~~~~~ 224 (363)
..+-.+.
T Consensus 959 ~aL~~~p 965 (1139)
T 4fhn_B 959 VALMVLS 965 (1139)
T ss_dssp HHHHHHH
T ss_pred HHHHhCC
Confidence 8776554
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.52 E-value=5.9 Score=33.69 Aligned_cols=260 Identities=10% Similarity=0.003 Sum_probs=138.9
Q ss_pred CChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcch----------hhhccC
Q 044256 73 GNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKG-INANT----------LLCKKT 141 (363)
Q Consensus 73 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----------~~~~~~ 141 (363)
++++.|++.+-.+.+.... ......+......++..|...|+++...+.+.-+.+.. ..+.. .+....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~-~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQ-ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSS-SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhh-ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 5667777766555543211 11134445667778888888888888877776655432 11111 001111
Q ss_pred ChHH--HHHHHHHHHH--cC-CCC---chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCc---HhHHHHHHHHHH
Q 044256 142 KLVE--ANRLLELMMQ--RG-LNP---VIFTYTPLLNGYCLVGKVNVAIALFDSMARK--GFMPD---VFSYSVLINGYC 208 (363)
Q Consensus 142 ~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 208 (363)
..+. -..+.+.+.. .| +-. .......|...+...|++.+|..++..+... |..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 1111 1111111100 01 000 1122356778889999999999999988643 32222 346677788899
Q ss_pred hcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CcchHHHHH--
Q 044256 209 KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE--TFTCNIFIDGLCKNGHVLEVMELFPTLEISN-CELFVEIFN-- 283 (363)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~-- 283 (363)
..+++..|..++.++.... ......|+ ...+...+..+...+++.+|.+.|.++.... ...+...+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~--------~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~ 260 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKT--------FKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPV 260 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHH--------HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhh--------cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHH
Confidence 9999999998887764321 11111222 2345666777788899999998888875431 111222121
Q ss_pred --HHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHcc--CChhHHHHHHHHHH
Q 044256 284 --SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE--GQIKKENYLLLSME 341 (363)
Q Consensus 284 --~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~ 341 (363)
.++.+..-.+....-..+.........-++...|..++.+|... .+|+.+.+.|....
T Consensus 261 L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 261 LSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 11111111221122222233322222235778888899888653 45666666665544
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.48 E-value=1.7 Score=29.48 Aligned_cols=70 Identities=7% Similarity=-0.003 Sum_probs=53.5
Q ss_pred CCCCCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 044256 18 CYRPLNDVTFNSLIKGFCMEGN---IRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNG 88 (363)
Q Consensus 18 ~~~p~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 88 (363)
+..| ++.+--.+..++.+..+ ..+++.+++.+.+.+..-....+-.|.-++.+.|+++.|.+..+.+.+.
T Consensus 35 ~~~v-s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTA-TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4456 77777777777877765 4578999999887752123455667778899999999999999999984
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.11 E-value=7.6 Score=37.72 Aligned_cols=118 Identities=8% Similarity=0.074 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----cC------------------cchHHHHHHHHHHHHhcCChHHHHH
Q 044256 243 ETFTCNIFIDGLCKNGHVLEVMELFPTLEIS----NC------------------ELFVEIFNSLIRGCCKFGIFEIASE 300 (363)
Q Consensus 243 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~------------------~~~~~~~~~li~~~~~~~~~~~a~~ 300 (363)
++..--.+..++...|++++|.+.|.+.... .. ..-..-|..++..+.+.+.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333334567788899999999999875311 00 0012346778888889999999998
Q ss_pred HHHHhhhCCCC--cc--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 044256 301 LFNKLSCKNLV--AD--VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362 (363)
Q Consensus 301 ~~~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 362 (363)
+-....+...+ ++ ...|..+..++...|++++|...+-.+..... -...+..|+..++..
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~ 984 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQ 984 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhC
Confidence 88777653211 21 23688899999999999999999988877543 356677777766644
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.00 E-value=2.5 Score=29.95 Aligned_cols=103 Identities=6% Similarity=0.002 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCc-------ccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc
Q 044256 24 DVTFNSLIKGFCMEGNIRDASQLVKKMATFG-CRPNV-------TTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI 95 (363)
Q Consensus 24 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 95 (363)
..++..-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...+++..|...|++.++......+.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456666788889999999999888866541 23442 245667788889999999999999865443211000
Q ss_pred ------------------cCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044256 96 ------------------YKPNVFCYGSLIDGLCKDRLVDQTKDLFMEM 126 (363)
Q Consensus 96 ------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 126 (363)
...+...--.+..+|.+.+++++|+.+++.+
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1112234445667777777777777776654
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.90 E-value=2.6 Score=28.57 Aligned_cols=63 Identities=11% Similarity=0.229 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHH
Q 044256 39 NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108 (363)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 108 (363)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-++..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-------~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-------CCchhhHHHHHH
Confidence 344566666777777889999999999999999999999999999998763 455667877664
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.71 E-value=4.8 Score=31.23 Aligned_cols=114 Identities=14% Similarity=0.190 Sum_probs=70.5
Q ss_pred ChhhhhHHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCChh
Q 044256 1 TSKVLGALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT----TCDTLITGLRRTGNMN 76 (363)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~ 76 (363)
.|++++|+.....-++. .|.|...-..++..++-.|++++|..=++...+. .|+.. .|..+|++
T Consensus 10 ~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a-------- 77 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA-------- 77 (273)
T ss_dssp TTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH--------
T ss_pred CCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH--------
Confidence 36788888888888776 7778888888899999999999998888887765 34432 23333322
Q ss_pred HHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 044256 77 LTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLC--KDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 129 (363)
...=.++.. |+..+..+.....-...++.+.. ..|+.+.|.++-.+..+.
T Consensus 78 --E~~R~~vfa-G~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 --AQARKDFAQ-GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --HHHHHHHTT-SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222222 22221112222333444555544 458888888888887664
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.69 E-value=2.9 Score=28.75 Aligned_cols=72 Identities=8% Similarity=-0.062 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHHHHhcCC---hHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 044256 276 ELFVEIFNSLIRGCCKFGI---FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLSMEENGCALDV 349 (363)
Q Consensus 276 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 349 (363)
.|+..+-..+..++.+..+ ..+++.+++.+...+..-.......+.-++.+.|++++|.+..+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4555555556666665554 345666666666543222333444455567777777777777777777 45654
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.49 E-value=5.7 Score=31.75 Aligned_cols=156 Identities=12% Similarity=-0.010 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCC
Q 044256 164 TYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPE 243 (363)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (363)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...|-++..- +.+-..+.+++++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~l--------lvev~~~~~~~~~ 91 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFY--------LLEVYDLAEVKVD 91 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHH--------HHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHH--------HHHHHHHcCCCCC
Confidence 455555566666666666666543221 13344554444433222 2333344566667
Q ss_pred hHHHHHHHHHHHhcCCHH-HHHHHHHHHHh----cc--CcchHHHHHHHHHHHHhcCChHHHHHHHH-------------
Q 044256 244 TFTCNIFIDGLCKNGHVL-EVMELFPTLEI----SN--CELFVEIFNSLIRGCCKFGIFEIASELFN------------- 303 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~------------- 303 (363)
......++..+......+ .=.++++.+++ .+ ..-++.....+...|.+.|++.+|...|-
T Consensus 92 ~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~ 171 (312)
T 2wpv_A 92 DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDL 171 (312)
T ss_dssp HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHH
Confidence 666666666655432111 11233333332 11 12356777888888888888888877552
Q ss_pred ---HhhhC--CCCccHHHH-HHHHHHHHccCChhHHHHHHHHHHH
Q 044256 304 ---KLSCK--NLVADVVAY-NILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 304 ---~~~~~--~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
..... |.+-+...| ...+-.|.-.|+...|..+++...+
T Consensus 172 l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 172 LWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11121 322222222 1223345567888888888887653
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.17 E-value=3.7 Score=29.11 Aligned_cols=65 Identities=6% Similarity=-0.028 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcH-------hHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 044256 162 IFTYTPLLNGYCLVGKVNVAIALFDSMARK-GFMPDV-------FSYSVLINGYCKNFNVEEAMNVSREMILN 226 (363)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (363)
..++-.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++..|...|++.++.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 345566678888899999999888875543 112331 25566778899999999999999987654
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.97 E-value=13 Score=34.96 Aligned_cols=257 Identities=12% Similarity=0.021 Sum_probs=133.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcccH--HHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc-cCCchhhHHHHHHHH
Q 044256 34 FCMEGNIRDASQLVKKMATFGCRPNVTTC--DTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGI-YKPNVFCYGSLIDGL 110 (363)
Q Consensus 34 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~ 110 (363)
....|+.++++.++...+..+-..+..+- ..+.-+.+..|..+++..++...........+. -.+....-.++.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34556666676666554431101122211 223334456666667788777766533000000 001122223333333
Q ss_pred HhcCC-HHHHHHHHHHHHHcCCCcch---------hhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 044256 111 CKDRL-VDQTKDLFMEMKDKGINANT---------LLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNV 180 (363)
Q Consensus 111 ~~~~~-~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 180 (363)
+-.|. -+++.+.+..+....-.... .+...|+.+....++..+.+.. ..+..-...+.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHH
Confidence 33332 24556666665543211101 3445677666677777666532 2222223333444557899999
Q ss_pred HHHHHHHHHHcCCCCcHhHHH---HHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhc
Q 044256 181 AIALFDSMARKGFMPDVFSYS---VLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKN 257 (363)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 257 (363)
+..+.+.+.... .|. .-|. ++.-+|+-.|+.....++++.+.... ..+..-...+.-++...
T Consensus 543 ~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-------------~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 543 ADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-------------NDDVRRAAVIALGFVLL 607 (963)
T ss_dssp GHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-------------CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-------------cHHHHHHHHHHHHhhcc
Confidence 999988887641 222 2333 23345677888777665666665431 11222223333344556
Q ss_pred CCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCCh-HHHHHHHHHhhh
Q 044256 258 GHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIF-EIASELFNKLSC 307 (363)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~ 307 (363)
|+.+.+.++++.+.+.+ .|...--..+..+....|+. .++..++..+..
T Consensus 608 g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77777788887776655 56666555565666656654 577888888865
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.49 E-value=5 Score=33.93 Aligned_cols=98 Identities=6% Similarity=-0.123 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCccHHH--HH
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISN--CELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK---NLVADVVA--YN 318 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 318 (363)
+...+...|.+.|+++.|.+.+.++...- ...-...+..+++.+...+++..+...+.++... +-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56678899999999999999999998653 2334567888899999999999999999987642 22233221 11
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHc
Q 044256 319 ILIHALGKEGQIKKENYLLLSMEEN 343 (363)
Q Consensus 319 ~li~~~~~~g~~~~a~~~~~~m~~~ 343 (363)
.-...+...+++.+|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122345678999999988887654
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.18 E-value=6.4 Score=33.30 Aligned_cols=64 Identities=6% Similarity=-0.166 Sum_probs=44.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044256 61 TCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 61 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 128 (363)
++..+...|.+.|+++.|.+.|.++...... ...-...+-.+++.+...+++..+...+.+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5667777788888888888888887765411 122355667777778788888888777777654
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.09 E-value=9.1 Score=29.72 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=44.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044256 67 TGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDK 129 (363)
Q Consensus 67 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 129 (363)
....+.|++++++.....-++.. |.|...-..++..+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567788888888888877764 677888888888999999999998888887765
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.05 E-value=4.1 Score=25.95 Aligned_cols=76 Identities=16% Similarity=0.021 Sum_probs=53.2
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIK--GFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
..++|..+-+++... + + .-...+|+ .+...|++++|..+.+.+. .||...|..| +-.+.|..+++..
T Consensus 22 ~HqEA~tIAdwL~~~---~-~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~ 90 (116)
T 2p58_C 22 YHEEANCIAEWLHLK---G-E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALES 90 (116)
T ss_dssp CHHHHHHHHHHHHHT---T-C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC---C-c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHH
Confidence 457788888888774 3 3 33333443 4678899999998877665 6888877665 3457788888888
Q ss_pred HHHHHHhcc
Q 044256 81 LHQEMVNGM 89 (363)
Q Consensus 81 ~~~~~~~~~ 89 (363)
.+..+...+
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 887777765
No 262
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=84.58 E-value=3.8 Score=28.65 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 41 RDASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 41 ~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
+++.++|..|...||--... -|......+-..|++.+|.++|+.-++..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34778888888777655443 45566666777788888888888777654
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.50 E-value=16 Score=30.32 Aligned_cols=171 Identities=11% Similarity=-0.037 Sum_probs=104.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---cHhHHHHHHHHHHhc-CChhHHHHHHHHHHHhhHHHHHHHhHhc
Q 044256 164 TYTPLLNGYCLVGKVNVAIALFDSMARK-GFMP---DVFSYSVLINGYCKN-FNVEEAMNVSREMILNGFKKIFNEMKLC 238 (363)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (363)
....|...|.+.|+.++...++...... +..| .......++..+... +..+.-.++..+.++.. ...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a--------~~~ 92 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA--------KQE 92 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH--------HHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--------HHH
Confidence 4566888999999999999888876543 1112 233456677777664 33344444444333221 000
Q ss_pred -CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCc-----chHHHHHHHHHHHHhcCChHHHHHHHHHhhhC--CC
Q 044256 239 -NVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCE-----LFVEIFNSLIRGCCKFGIFEIASELFNKLSCK--NL 310 (363)
Q Consensus 239 -~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~ 310 (363)
..--....=.-++..|...|++.+|.+++..+.+.=-. .-..++..-+..|...+++.++...+...... .+
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 00000111125778899999999999999888754111 22445667778889999999999999887643 12
Q ss_pred CccHHHHHHH----HHHHH-ccCChhHHHHHHHHHHH
Q 044256 311 VADVVAYNIL----IHALG-KEGQIKKENYLLLSMEE 342 (363)
Q Consensus 311 ~~~~~~~~~l----i~~~~-~~g~~~~a~~~~~~m~~ 342 (363)
.+++..-..+ ...+. ..++|.+|...|-+..+
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 2344332221 22345 78999999888777653
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.33 E-value=3.9 Score=26.00 Aligned_cols=76 Identities=13% Similarity=-0.008 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHHHHcCCCCCchhhHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 044256 3 KVLGALMAFGSFIRRCYRPLNDVTFNSLIK--GFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLK 80 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 80 (363)
..++|..+-+++... + + .-...+|+ .+...|++++|..+.+.+. .||...|..| +-.+.|..+++..
T Consensus 21 ~HqEA~tIAdwL~~~---~-~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~ 89 (115)
T 2uwj_G 21 CHEEALCIAEWLERL---G-Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDR 89 (115)
T ss_dssp CHHHHHHHHHHHHHT---T-C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC---C-c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHH
Confidence 457888888888774 3 3 33333443 4678899999988776655 6888877665 4458888888888
Q ss_pred HHHHHHhcc
Q 044256 81 LHQEMVNGM 89 (363)
Q Consensus 81 ~~~~~~~~~ 89 (363)
.+..+...+
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 887887766
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.26 E-value=4.9 Score=29.56 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 37 EGNIRDASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 37 ~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
.++..++.++|..|...||.-... -|......+-..|++.+|.++|+.-++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344667777777777766554433 34555666666777777777777666654
No 266
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=83.78 E-value=4.6 Score=28.66 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 41 RDASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 41 ~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
+++.++|..|...||--... -|......+-..|++.+|.++|..-++.+
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44677888888877665543 45566666777888888888888777765
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.59 E-value=19 Score=29.03 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH
Q 044256 163 FTYTPLLNGYCLVGKVNVAIALFDS 187 (363)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~ 187 (363)
.+|.++..-|.+.+++++|++++..
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3556666677777888888776643
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.39 E-value=14 Score=25.46 Aligned_cols=69 Identities=9% Similarity=-0.030 Sum_probs=48.4
Q ss_pred CCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 044256 159 NPVIFTYTPLLNGYCLVGK---VNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNG 227 (363)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (363)
.|+..+-..+..++.+..+ ...++.+++++...+..-.....-.|.-++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4666666667777777765 45688888888776432233444456668899999999998888887654
No 269
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=78.26 E-value=7.2 Score=29.25 Aligned_cols=49 Identities=8% Similarity=0.000 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 044256 41 RDASQLVKKMATFGCRPNVT-TCDTLITGLRRTGNMNLTLKLHQEMVNGM 89 (363)
Q Consensus 41 ~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 89 (363)
+++.++|..|...||.-... -|......+-..|++.+|..+|+.-++..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 56777888888877665543 45666667777888888888888777655
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.71 E-value=19 Score=26.56 Aligned_cols=57 Identities=11% Similarity=-0.021 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCcc
Q 044256 257 NGHVLEVMELFPTLEISNCEL-FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVAD 313 (363)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (363)
.+....+.++|..|...++-. -...|......+...|++.+|.++|+.-++.+..|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344667888888887776543 345677777777888888888888888887776663
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.54 E-value=16 Score=23.31 Aligned_cols=88 Identities=11% Similarity=-0.066 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHH
Q 044256 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336 (363)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 336 (363)
....++|..+-+.+...+. ...+-.+=+..+...|++++|..+.+... .||...|-.+- -.+.|..+++...
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHH
Confidence 3457788877777776552 22222233455678899999888766654 67888887663 3577888888888
Q ss_pred HHHHHHcCCCCCHHHHH
Q 044256 337 LLSMEENGCALDVDTFN 353 (363)
Q Consensus 337 ~~~m~~~g~~p~~~~~~ 353 (363)
+.++-.+| .|....|.
T Consensus 91 L~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 91 LAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTCS-SHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 87777665 44444444
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.68 E-value=17 Score=23.24 Aligned_cols=88 Identities=16% Similarity=0.007 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHH
Q 044256 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYL 336 (363)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 336 (363)
....++|..+-+.+...+. ...+-.+=+..+...|++++|..+.+... .||...|-.+- -.+.|..+++...
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHH
Confidence 3457788888777776652 22222333455678899999988877664 68888887664 3577888888888
Q ss_pred HHHHHHcCCCCCHHHHH
Q 044256 337 LLSMEENGCALDVDTFN 353 (363)
Q Consensus 337 ~~~m~~~g~~p~~~~~~ 353 (363)
+.++-.+| .|....|.
T Consensus 92 L~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCC-CHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 77776665 44444444
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=71.19 E-value=57 Score=29.13 Aligned_cols=151 Identities=11% Similarity=-0.072 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHH----HHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHH
Q 044256 176 GKVNVAIALFDSMARKGFMPDVFSYSVL----INGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFI 251 (363)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 251 (363)
.+.+.|...+....... ..+......+ .......+...++...+...... ..+.....-.+
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~e~~~ 292 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--------------SQSTSLIERRV 292 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--------------CCCHHHHHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--------------CCChHHHHHHH
Confidence 37788888887776543 1232222222 22223334233444333332211 13333344445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC------------CCCcc------
Q 044256 252 DGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK------------NLVAD------ 313 (363)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------~~~~~------ 313 (363)
....+.|+++.|...|+.|.... .......--+..++...|+.++|..+|+.+... |.++.
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~ 371 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKA 371 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCC
Confidence 55567799999999998886543 122333444566777889999998888876532 21110
Q ss_pred ------H-H--HHHHHHHHHHccCChhHHHHHHHHHHH
Q 044256 314 ------V-V--AYNILIHALGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 314 ------~-~--~~~~li~~~~~~g~~~~a~~~~~~m~~ 342 (363)
. . .-...+..+...|....|...+..+..
T Consensus 372 ~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 0 0 111224456677888888887777765
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.44 E-value=59 Score=29.02 Aligned_cols=84 Identities=10% Similarity=-0.036 Sum_probs=53.8
Q ss_pred hcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHH
Q 044256 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENY 335 (363)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 335 (363)
..+...++...+....... .+.....-.+....+.|+++.|...|+.|..... ......-=+.+++...|+.++|..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~ 340 (618)
T 1qsa_A 264 GNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKE 340 (618)
T ss_dssp STTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHH
Confidence 3443456666666654332 3333333444445577999999999999876421 123333334567788999999999
Q ss_pred HHHHHHH
Q 044256 336 LLLSMEE 342 (363)
Q Consensus 336 ~~~~m~~ 342 (363)
+|+.+..
T Consensus 341 ~~~~~a~ 347 (618)
T 1qsa_A 341 ILHQLMQ 347 (618)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999875
No 275
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=66.35 E-value=34 Score=25.41 Aligned_cols=50 Identities=10% Similarity=-0.015 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHcCCCCCch-hhH-----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044256 4 VLGALMAFGSFIRRCYRPLND-VTF-----NSLIKGFCMEGNIRDASQLVKKMATF 53 (363)
Q Consensus 4 ~~~A~~~~~~~~~~~~~p~~~-~~~-----~~li~~~~~~~~~~~a~~~~~~m~~~ 53 (363)
.+.|+.+|+.+.+.-..|.+. ... ...+-.|.++|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 467888888887652222010 111 13344577888888888888887753
No 276
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.86 E-value=52 Score=26.61 Aligned_cols=144 Identities=12% Similarity=-0.036 Sum_probs=74.9
Q ss_pred HhcCCHHHHHHH----HHHHHHcCCCCcHhHHHHHHHHHHhcCChh-HHHHHHHHHHHhhHHHHHHHhHh-cCCCCChHH
Q 044256 173 CLVGKVNVAIAL----FDSMARKGFMPDVFSYSVLINGYCKNFNVE-EAMNVSREMILNGFKKIFNEMKL-CNVVPETFT 246 (363)
Q Consensus 173 ~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 246 (363)
.+.|+...+-++ .+...+.++++|......++..+.....-+ .-..+++++++ ..... ....-|+..
T Consensus 66 l~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~-------WS~~~g~~~~Gdp~L 138 (336)
T 3lpz_A 66 LRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMID-------WSKKFGDYPAGDPEL 138 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH-------HHHHHSSCTTCCHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH-------HHhhcCCCCCCCHHH
Confidence 344554443333 344555667777777666766665544321 11223333222 11111 123456777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHc
Q 044256 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGK 326 (363)
Q Consensus 247 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 326 (363)
...+...|.+.+++.+|...|= .+-.+.+..+..++.-+...+...++ +...-..+ --|.-
T Consensus 139 H~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaV-L~yL~ 199 (336)
T 3lpz_A 139 HHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAV-LPYLL 199 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHH-HHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHH-HHHHH
Confidence 7888899999999999988772 23344456665555555444432211 22222222 23445
Q ss_pred cCChhHHHHHHHHHHH
Q 044256 327 EGQIKKENYLLLSMEE 342 (363)
Q Consensus 327 ~g~~~~a~~~~~~m~~ 342 (363)
.++...|..+++...+
T Consensus 200 l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 200 VANVRAANTAYRIFTS 215 (336)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 5666777666555543
No 277
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.89 E-value=46 Score=25.30 Aligned_cols=90 Identities=16% Similarity=0.002 Sum_probs=55.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--cCcc----hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 044256 250 FIDGLCKNGHVLEVMELFPTLEIS--NCEL----FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHA 323 (363)
Q Consensus 250 ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 323 (363)
-++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+++.. .+++......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467788899999999999887543 2221 001112223333333333444455555533 4466777777888
Q ss_pred HHccCChhHHHHHHHHHHH
Q 044256 324 LGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 324 ~~~~g~~~~a~~~~~~m~~ 342 (363)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 8999999999988876543
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=63.81 E-value=47 Score=25.41 Aligned_cols=50 Identities=8% Similarity=-0.061 Sum_probs=27.4
Q ss_pred HHhcCCHHHHHHHHHHHHhccCcchHHH--HHHHHHHHHhcCChHHHHHHHH
Q 044256 254 LCKNGHVLEVMELFPTLEISNCELFVEI--FNSLIRGCCKFGIFEIASELFN 303 (363)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~ 303 (363)
.+..++.....++.+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3445665555666677776665444321 1233444556777766665555
No 279
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=62.78 E-value=9.9 Score=21.44 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 044256 41 RDASQLVKKMATFGCRPNVTTCDTLITGL 69 (363)
Q Consensus 41 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 69 (363)
++|...|.+|++..-.++.-||...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34444444444432223334455444444
No 280
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=62.18 E-value=23 Score=21.30 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=16.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 044256 329 QIKKENYLLLSMEENGCALDVDTFNTLMISFLQK 362 (363)
Q Consensus 329 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 362 (363)
..-.+.++++.+.+.+...+..|....+..+.+.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3444555555555544444555555555544443
No 281
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=59.83 E-value=37 Score=25.82 Aligned_cols=63 Identities=10% Similarity=-0.025 Sum_probs=33.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCCCc-cCCchhhHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 044256 66 ITGLRRTGNMNLTLKLHQEMVNGMGDFGGI-YKPNVFCYGSLIDGLC--KDRLVDQTKDLFMEMKD 128 (363)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 128 (363)
+...++.|+.+....+++.+.+.+...... ...+..-++.|..+.. +.|+.+-+..+++.-..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 74 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK 74 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccc
Confidence 344456788888888888777666221100 0001223344444432 56777777777766443
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.59 E-value=42 Score=23.43 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=22.3
Q ss_pred HHHHHHHHHhccCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCc
Q 044256 263 VMELFPTLEISNCEL-FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVA 312 (363)
Q Consensus 263 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 312 (363)
+.++|..|...++-. -...|......+...|++.+|.++|+.-++.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444444444443321 12334444444444555555555555544444444
No 283
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=58.70 E-value=14 Score=21.30 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRT 72 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 72 (363)
.++.+++.++...-.++++..++++...| ..+..+|---.+..++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 57788888888888999999999999988 56777777666666654
No 284
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=57.60 E-value=43 Score=22.99 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=30.2
Q ss_pred HHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCC
Q 044256 270 LEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329 (363)
Q Consensus 270 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 329 (363)
+.+.|+++++. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34455444332 223334444445556666666666655444455555555555555554
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.31 E-value=62 Score=24.70 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=9.9
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 044256 169 LNGYCLVGKVNVAIALFD 186 (363)
Q Consensus 169 i~~~~~~~~~~~a~~~~~ 186 (363)
+...+..|+.+.+..+++
T Consensus 152 L~~A~~~~~~~~v~~Ll~ 169 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLD 169 (285)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 344455677665555543
No 286
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=56.68 E-value=74 Score=25.41 Aligned_cols=117 Identities=12% Similarity=-0.000 Sum_probs=62.7
Q ss_pred HHhcCCHHHHHH----HHHHHHHcCCCCcHhHHHHHHHHHHhcCChh-HHHHHHHHHHHhhHHHHHHHhHhcC-CCCChH
Q 044256 172 YCLVGKVNVAIA----LFDSMARKGFMPDVFSYSVLINGYCKNFNVE-EAMNVSREMILNGFKKIFNEMKLCN-VVPETF 245 (363)
Q Consensus 172 ~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 245 (363)
+.+.|+...|-+ +.+...+.+++++......++..+......+ .-..+++.+++-. ....+ ...++.
T Consensus 63 ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS-------~~~g~~~~Gdp~ 135 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWS-------IKFSEYKFGDPY 135 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHH-------HHTSSCTTCCHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHH-------hhcCCCCCCCHH
Confidence 334455544443 3455555677777777777776665533222 1223333332211 11111 234677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhc---CChHHHH
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF---GIFEIAS 299 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~ 299 (363)
....+...|.+.|++.+|...|-. +-.-+...+..++.-+... |...++-
T Consensus 136 LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~d 188 (312)
T 2wpv_A 136 LHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVA 188 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHH
Confidence 888889999999999998887641 1111344555555444444 5544443
No 287
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=56.56 E-value=41 Score=23.15 Aligned_cols=35 Identities=6% Similarity=0.087 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCC
Q 044256 295 FEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329 (363)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 329 (363)
.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 44566666666555444455544444455554443
No 288
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=56.10 E-value=44 Score=22.62 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccC
Q 044256 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328 (363)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 328 (363)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44455555555555443444444444444444444
No 289
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=55.34 E-value=49 Score=22.91 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=16.1
Q ss_pred ChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccC
Q 044256 294 IFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328 (363)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 328 (363)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554443334444444444444444
No 290
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=55.12 E-value=26 Score=23.94 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=23.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCC
Q 044256 284 SLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329 (363)
Q Consensus 284 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 329 (363)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3344444444555566666666555444455554444555555443
No 291
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=54.67 E-value=37 Score=23.98 Aligned_cols=70 Identities=10% Similarity=0.014 Sum_probs=41.2
Q ss_pred hhhHHHHHHH-HHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHhcCCh
Q 044256 4 VLGALMAFGS-FIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATF--GCRPNVTTCDTLITGLRRTGNM 75 (363)
Q Consensus 4 ~~~A~~~~~~-~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~ 75 (363)
.+.+++-+.. +.+.|.++ + .-=..++..+...+..-.|.++++.+.+. +...+..|.---+..+...|-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~-T-~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKY-T-KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCC-C-HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444544444 34456665 3 33455666666667777788888887766 5445555554556666666644
No 292
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=53.56 E-value=30 Score=23.32 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=25.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCC
Q 044256 285 LIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ 329 (363)
Q Consensus 285 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 329 (363)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444455566666666666665444455555555555555554
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.90 E-value=53 Score=22.55 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=41.3
Q ss_pred HHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCC
Q 044256 232 FNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI 294 (363)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 294 (363)
.+.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 10 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 10 LETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3445667777776443 4566666667778899999999877645555555555666666654
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.98 E-value=70 Score=23.70 Aligned_cols=87 Identities=13% Similarity=0.031 Sum_probs=44.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccc--HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhhHHHHHH
Q 044256 31 IKGFCMEGNIRDASQLVKKMATFGCRPNVTT--CDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFCYGSLID 108 (363)
Q Consensus 31 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 108 (363)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.+.... ..+..-++ .+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~---~~~~~g~t-~l~ 84 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPM---ALDRHGQT-AAH 84 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTT---CCCTTSCC-HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCcc---ccCCCCCC-HHH
Confidence 4445677888888888877766665544321 1223444455666543 344444441110 11222222 334
Q ss_pred HHHhcCCHHHHHHHHHH
Q 044256 109 GLCKDRLVDQTKDLFME 125 (363)
Q Consensus 109 ~~~~~~~~~~a~~~~~~ 125 (363)
..+..|+.+-+..+++.
T Consensus 85 ~A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 44566776655555444
No 295
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.81 E-value=61 Score=22.96 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhccCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHH
Q 044256 262 EVMELFPTLEISNCEL-FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVV 315 (363)
Q Consensus 262 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (363)
.+.++|..|...++-. -...|......+...|++.+|.++|+.-++.+..|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3556666666665432 24456666666677777777777777777766666443
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=51.42 E-value=65 Score=24.37 Aligned_cols=49 Identities=14% Similarity=0.027 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHHHHcCCCCCchh-------hHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 044256 2 SKVLGALMAFGSFIRRCYRPLNDV-------TFNSLIKGFC--MEGNIRDASQLVKKMA 51 (363)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~p~~~~-------~~~~li~~~~--~~~~~~~a~~~~~~m~ 51 (363)
|+.+....+++.+.+.|..+ +.. -++.|..+.. +.|+.+-+..+++.-.
T Consensus 16 g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 16 GSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp TCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 55666667777777776665 322 2344444432 5688777777776653
No 297
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.15 E-value=58 Score=22.53 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=18.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccC
Q 044256 287 RGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEG 328 (363)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 328 (363)
..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 34 ~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 34 SVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333334444555555555544433334444444444444444
No 298
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=50.60 E-value=99 Score=25.02 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMK 127 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~ 127 (363)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567788888899999998888874
No 299
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.04 E-value=51 Score=23.23 Aligned_cols=59 Identities=7% Similarity=0.076 Sum_probs=30.6
Q ss_pred HhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhC--CCCccHHHHHHHHHHHHccCCh
Q 044256 271 EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCK--NLVADVVAYNILIHALGKEGQI 330 (363)
Q Consensus 271 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~ 330 (363)
.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-.
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445554332 234445555555666666666666654 4344555544455555555544
No 300
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.04 E-value=63 Score=22.34 Aligned_cols=62 Identities=5% Similarity=0.087 Sum_probs=40.4
Q ss_pred HHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCh
Q 044256 12 GSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75 (363)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 75 (363)
+.+.+.|..+ +.-=..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-.
T Consensus 16 ~~l~~~g~r~--T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKN--SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--C--HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCC--CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455666665 4445566777777777888999999988776555666655566677666644
No 301
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.47 E-value=76 Score=23.07 Aligned_cols=59 Identities=8% Similarity=-0.019 Sum_probs=31.6
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 044256 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223 (363)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (363)
++..+-...+.++.+.|+.+ +...+..+.. .++...-...+.++.+.+. .++...+..+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~ 182 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKL 182 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 45555555666666666643 3334444443 2466666666666666665 3444444433
No 302
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=47.92 E-value=70 Score=22.55 Aligned_cols=60 Identities=10% Similarity=-0.076 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCc--cHHHHHHHHH-H-----HHccCChhHHHHHHHHHHH
Q 044256 282 FNSLIRGCCKFGIFEIASELFNKLSCKNLVA--DVVAYNILIH-A-----LGKEGQIKKENYLLLSMEE 342 (363)
Q Consensus 282 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 342 (363)
|...+..|. .|++-+|-++|+.+-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333333333 377777777777776543344 4556666666 2 2346777777777777765
No 303
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=47.91 E-value=36 Score=19.17 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=17.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC
Q 044256 35 CMEGNIRDASQLVKKMATFGCRPN 58 (363)
Q Consensus 35 ~~~~~~~~a~~~~~~m~~~~~~~~ 58 (363)
...|+.+.|+..+-.|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 446788888888877776655554
No 304
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.30 E-value=63 Score=21.83 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=41.3
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 044256 153 MMQRGLNPVIFTYTPLLNGYCLVG-KVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215 (363)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (363)
+.+.|+.++. .-..++..+...+ .+-.|.++++.+.+.+...+..|...-+..+...|-..+
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 4455655554 3345566666666 788899999999888766677766666677777666543
No 305
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.85 E-value=87 Score=23.03 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=21.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccc--HHHHHHHHHhcCChhHHHHHH
Q 044256 34 FCMEGNIRDASQLVKKMATFGCRPNVTT--CDTLITGLRRTGNMNLTLKLH 82 (363)
Q Consensus 34 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~ 82 (363)
.++.|+.+....++ +.|..++... -.+.+...+..|+.+-+..++
T Consensus 16 A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 16 ATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 45677765554444 4444443221 123445556667665444333
No 306
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=45.41 E-value=93 Score=23.21 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhccCcchHH-------HHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 044256 260 VLEVMELFPTLEISNCELFVE-------IFNSLIRGCCKFGIFEIASELFNKLSCK 308 (363)
Q Consensus 260 ~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~~~~~ 308 (363)
.+.|+.+|+.+.+...-++.. .-...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 556777777766543111111 1124456688899999999999988765
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.87 E-value=94 Score=22.84 Aligned_cols=109 Identities=10% Similarity=0.030 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCCCCchh--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc---HHHHHHHHHhcCChhHHHHHHH
Q 044256 9 MAFGSFIRRCYRPLNDV--TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT---CDTLITGLRRTGNMNLTLKLHQ 83 (363)
Q Consensus 9 ~~~~~~~~~~~~p~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~ 83 (363)
++++.+.+.|..+ +.. .-.+.+...+..|+.+-+.. +.+.|..++... -.+.+...+..|+.+-+ +
T Consensus 23 ~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v----~ 93 (240)
T 3eu9_A 23 ERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKY----YISKGAIVDQLGGDLNSTPLHWATRQGHLSMV----V 93 (240)
T ss_dssp HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHH----H
T ss_pred HHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHH----HHHcCCcchhhcCCcCCChhHHHHHcCCHHHH----H
Confidence 4556666666555 221 12235556677787655444 444543333221 11234444556665544 3
Q ss_pred HHHhccCCCCCccCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 044256 84 EMVNGMGDFGGIYKPNVFCYGSLIDGLCKDRLVDQTKDLFMEMKDKGINAN 134 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 134 (363)
.+.+.+... ...+....+. +...+..|+.+ +++.+.+.+..++
T Consensus 94 ~Ll~~g~~~---~~~~~~g~t~-l~~A~~~~~~~----~~~~Ll~~~~~~~ 136 (240)
T 3eu9_A 94 QLMKYGADP---SLIDGEGCSC-IHLAAQFGHTS----IVAYLIAKGQDVD 136 (240)
T ss_dssp HHHHTTCCT---TCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred HHHHcCCCC---cccCCCCCCH-HHHHHHcCHHH----HHHHHHhcCCCcc
Confidence 444444111 0112222233 34445567765 4444445554443
No 308
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=43.32 E-value=65 Score=22.28 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=43.0
Q ss_pred HHHHHcCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChh
Q 044256 12 GSFIRRCYRPLNDVTFNSLIKGFCMEG-NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMN 76 (363)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 76 (363)
+.+.+.|..+ + ..=..++..+...+ ..-.|.++++.+.+.+...+..|..-.+..+...|-..
T Consensus 6 ~~l~~~g~r~-T-~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKV-T-LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCC-C-HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCC-C-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3456677776 3 33445666666666 77889999999988765566666666677777777543
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.32 E-value=51 Score=22.66 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=39.8
Q ss_pred HHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCh
Q 044256 12 GSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75 (363)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 75 (363)
+.+.+.|.++ + .-=..++..+...+ .-.|.++++.+.+.+...+..|.---+..+...|-.
T Consensus 8 ~~L~~~g~r~-T-~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRL-T-PQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCC-C-HHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCc-C-HHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3455667776 3 33445566666666 778999999998876555666655556666666643
No 310
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=43.25 E-value=12 Score=24.86 Aligned_cols=31 Identities=3% Similarity=0.132 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhcCCC-CCcccHHHHHHHH
Q 044256 39 NIRDASQLVKKMATFGCR-PNVTTCDTLITGL 69 (363)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~ 69 (363)
++++|.+.+..|++.-+. -.+..||..+..+
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~L 73 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 73 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 566777777776654222 2455677766555
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.78 E-value=83 Score=21.90 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCC--hHHHHHHHHHhhhCCCCccHHH
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI--FEIASELFNKLSCKNLVADVVA 316 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 316 (363)
....++.-|...|+.++|.+.++++.... -....+...+..++-+.++ .+.+..++..+...++-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 35667888999999999999999986332 2234455556666665432 4567778888877765544443
No 312
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=42.55 E-value=1.5e+02 Score=24.71 Aligned_cols=242 Identities=11% Similarity=0.058 Sum_probs=132.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC---CcccHHHHHHHHHhcC-ChhHHHHHHHHHHhccCCCCCccCC
Q 044256 24 DVTFNSLIKGFCMEGNIRDASQLVKKMATF-GCRP---NVTTCDTLITGLRRTG-NMNLTLKLHQEMVNGMGDFGGIYKP 98 (363)
Q Consensus 24 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+...|...|.+.|+.++..+++...... +.-| .......++..+.... ..+.-.++..+.++.. ..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-------~~ 91 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-------KQ 91 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-------HH
Confidence 345677899999999999999998876532 1111 1223456777776543 3344444444444432 11
Q ss_pred chhhH------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 044256 99 NVFCY------GSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGY 172 (363)
Q Consensus 99 ~~~~~------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (363)
+..+| ..++..|...|++.+|..++.++.+.-...+. -..-..++..-+..|
T Consensus 92 ~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd----------------------~~~llev~lle~~~~ 149 (394)
T 3txn_A 92 EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDD----------------------KNLLVEVQLLESKTY 149 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC----------------------THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc----------------------chhHHHHHHHHHHHH
Confidence 12233 25788888999999999888888763111000 001134566667888
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCCCcHhHHHHH--H--HHHH-hcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCC--CC
Q 044256 173 CLVGKVNVAIALFDSMARK--GFMPDVFSYSVL--I--NGYC-KNFNVEEAMNVSREMILNGFKKIFNEMKLCNVV--PE 243 (363)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l--~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 243 (363)
...+++.++...+...... .+.+++..-..+ . ..+. ..+++..|...|-+.... |. ..+.+ .+
T Consensus 150 ~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~-----f~---~~~~~~~~~ 221 (394)
T 3txn_A 150 HALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG-----FD---SVDSVKALT 221 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-----HT---TTCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc-----cc---ccccHHHHH
Confidence 8999999999999876543 232333332221 1 2345 689999998877654321 11 11111 11
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHH-HH-HhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 044256 244 TFTCNIFIDGLCKNGHVLEVMELFP-TL-EISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLS 306 (363)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~-~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 306 (363)
...|..+... . .++..+.-.++. .. ... ..|....+..++.+|. .+++.+...+++...
T Consensus 222 ~lkYlvL~aL-l-~~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~~-~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 222 SLKYMLLCKI-M-LGQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEASH-KRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHHHH-H-TTCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHHH-TTCHHHHHHHHHHST
T ss_pred HHHHHHHHHH-H-cCCHHHHHHHhcccccccc-CCccHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 2233332222 2 233223222221 11 111 2466666666776654 567766666666553
No 313
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=42.54 E-value=1.4e+02 Score=24.53 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 165 YTPLLNGYCLVGKVNVAIALFDSMA 189 (363)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~ 189 (363)
...++.-|...|+.++|...++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3456777777788888877777764
No 314
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=42.44 E-value=47 Score=26.84 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=25.3
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044256 152 LMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALFDSMARKG 192 (363)
Q Consensus 152 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 192 (363)
.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|
T Consensus 218 hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 218 HFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 34445666666666666666666666666667776666554
No 315
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.80 E-value=86 Score=21.81 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCC--hhHHHHHHHHHHHcCCCCCH
Q 044256 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ--IKKENYLLLSMEENGCALDV 349 (363)
Q Consensus 281 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 349 (363)
....++.-|...|+.++|.+.++++..-. -....+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45678888999999999999999985321 1123344444555555332 45677788888776654433
No 316
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=41.30 E-value=80 Score=21.33 Aligned_cols=19 Identities=16% Similarity=0.597 Sum_probs=13.1
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 044256 31 IKGFCMEGNIRDASQLVKK 49 (363)
Q Consensus 31 i~~~~~~~~~~~a~~~~~~ 49 (363)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445677888777777766
No 317
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=41.04 E-value=76 Score=20.98 Aligned_cols=45 Identities=2% Similarity=-0.148 Sum_probs=28.0
Q ss_pred HHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044256 229 KKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEIS 273 (363)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 273 (363)
.-+|+.+....+.|+...--.-+..+...++++.|..+...+...
T Consensus 46 ~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 46 ALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 355666666666555443333344455678888888888777653
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.58 E-value=1e+02 Score=21.74 Aligned_cols=62 Identities=5% Similarity=-0.052 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CcccHHHHHH-HH-----HhcCChhHHHHHHHHHHhc
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRP--NVTTCDTLIT-GL-----RRTGNMNLTLKLHQEMVNG 88 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~-~~-----~~~~~~~~a~~~~~~~~~~ 88 (363)
.|..-+..+ ..|++-+|-++++..-...-.+ ....|..||+ +. .+.|+...|..++.+....
T Consensus 35 ~~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344445444 4599999999999987664345 4556777777 32 3579999999999988764
No 319
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.52 E-value=52 Score=22.07 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 044256 166 TPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215 (363)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (363)
..++..+...+.+-.|.++++.+.+.+...+..|....+..+...|-..+
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 34566666677788899999999888766677776667777777776544
No 320
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=38.09 E-value=47 Score=22.65 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhH
Q 044256 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEE 215 (363)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (363)
-..++..+...+.+-.|.++++.+.+.+...+..|.-.-+..+...|-..+
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 345667777777788899999999888766677776666777777776544
No 321
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=37.77 E-value=1.5e+02 Score=23.47 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=40.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCcc---hHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHcc
Q 044256 251 IDGLCKNGHVLEVMELFPTLEISNCEL---FVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKE 327 (363)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 327 (363)
+...+..|..+.+..++.. .+..+ |..-.+.|.. .++.|+.+-+ +.+.+.|..+|..+ .+...++.
T Consensus 243 L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~-A~~~g~~~iv----~~Ll~~GAd~n~~~---~L~~A~~~ 311 (337)
T 4g8k_A 243 LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLL-AVELKLKKIA----ELLCKRGASTDCGD---LVMTARRN 311 (337)
T ss_dssp HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHH-HHHTTCHHHH----HHHHTTSCSSTTCC---HHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHH-HHHcCCHHHH----HHHHHCCCCCCCCC---HHHHHHHc
Confidence 3344567777666555432 12221 2222233333 3456665544 44455666665433 23334455
Q ss_pred CChhHHHHHHHHHHHcCCCCCH
Q 044256 328 GQIKKENYLLLSMEENGCALDV 349 (363)
Q Consensus 328 g~~~~a~~~~~~m~~~g~~p~~ 349 (363)
|+.+ +.+.+++.|-.||.
T Consensus 312 ~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 312 YDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp TCHH----HHHHHHHTTCCC--
T ss_pred CCHH----HHHHHHHCcCCCCC
Confidence 6643 55667778776664
No 322
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.42 E-value=65 Score=23.63 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=10.0
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 044256 33 GFCMEGNIRDASQLVKKMA 51 (363)
Q Consensus 33 ~~~~~~~~~~a~~~~~~m~ 51 (363)
.|.++|.+++|.++|++.-
T Consensus 126 VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC
T ss_pred HHHHccchHHHHHHHHHHh
Confidence 3455555555555555543
No 323
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=36.99 E-value=30 Score=19.50 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=10.3
Q ss_pred hhhhHHHHHHHHHHcCCCC
Q 044256 3 KVLGALMAFGSFIRRCYRP 21 (363)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~p 21 (363)
|++.|...|..+...|--|
T Consensus 35 d~~~A~~~F~~l~~~~~IP 53 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIP 53 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSC
T ss_pred CHHHHHHHHHHHHHcCCCC
Confidence 4555666666655544444
No 324
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.39 E-value=96 Score=20.78 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCC--hHHHHHHHHHhhhCCCCccHHHHH
Q 044256 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI--FEIASELFNKLSCKNLVADVVAYN 318 (363)
Q Consensus 247 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 318 (363)
...++.-|...|+.++|.+.++++.... -....+...+..++-+.++ .+.+..++..+...|+-+......
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~ 82 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 82 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 4567888999999999999999986332 2234455556666665542 466778888888776554444433
No 325
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=36.15 E-value=16 Score=25.54 Aligned_cols=31 Identities=3% Similarity=0.132 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhcCCC-CCcccHHHHHHHH
Q 044256 39 NIRDASQLVKKMATFGCR-PNVTTCDTLITGL 69 (363)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~ 69 (363)
++++|.+.+..|++.-+. -.+..||..+..+
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~L 104 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 104 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 577788777777654222 2445677776655
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.53 E-value=3e+02 Score=26.23 Aligned_cols=48 Identities=15% Similarity=-0.015 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhh
Q 044256 314 VVAYNILIHALGKEGQIKKENYLLLSMEENGCALDVD----TFNTLMISFLQ 361 (363)
Q Consensus 314 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~ 361 (363)
..-|..++..+-+.+-++-+.++-+..++.--.-|.. .|..++++.+-
T Consensus 897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 3467777777778888888887777777641112222 45555555543
No 327
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=35.32 E-value=66 Score=18.57 Aligned_cols=44 Identities=9% Similarity=0.125 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHh
Q 044256 247 CNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCK 291 (363)
Q Consensus 247 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 291 (363)
++.++..++...-++.++-.+.++.+.| ..+...|.--++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4445555555555666666666666555 3444445444444443
No 328
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.28 E-value=72 Score=19.00 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhc
Q 044256 260 VLEVMELFPTLEIS 273 (363)
Q Consensus 260 ~~~a~~~~~~~~~~ 273 (363)
.-.+.++++.+.+.
T Consensus 33 ~~s~~el~~~l~~~ 46 (83)
T 2fu4_A 33 HVSAEDLYKRLIDM 46 (83)
T ss_dssp SBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh
Confidence 33444555554443
No 329
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=34.89 E-value=1.8e+02 Score=23.48 Aligned_cols=58 Identities=10% Similarity=0.069 Sum_probs=39.7
Q ss_pred HHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 044256 218 NVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNC 275 (363)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 275 (363)
.+++.+++...-.++..+.+.++.|...++.-++..+.+.=.++.+.++|+.+...|.
T Consensus 218 ~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~ 275 (345)
T 2qfz_A 218 KMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPD 275 (345)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCC
Confidence 3444444433346777777777777777777777777777778888888888877653
No 330
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=34.50 E-value=1.8e+02 Score=23.39 Aligned_cols=58 Identities=10% Similarity=0.152 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 044256 217 MNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISN 274 (363)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 274 (363)
...++.+++...-.++..+.+.++.|...++.-++..+++.=.++.+.++|+.+...|
T Consensus 201 ~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 201 FAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 3455555554445788888889999999888889988888888999999999998776
No 331
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.47 E-value=2e+02 Score=23.86 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=31.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC----------------CCCcHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 044256 169 LNGYCLVGKVNVAIALFDSMARKG----------------FMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223 (363)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (363)
+..+....+.+++.+.++.+...- ..+-......+...|...|+.++|..++++.
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~ 153 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDL 153 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444555667777777766553210 0112233445556666777777777766665
No 332
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.46 E-value=1.2e+02 Score=21.24 Aligned_cols=49 Identities=8% Similarity=-0.031 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 044256 261 LEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLV 311 (363)
Q Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 311 (363)
+.+..++..+.+.|+-.|...-..++....+.| .....+-+++...|+.
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 334444455555554444333334444443322 1233444455555543
No 333
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.24 E-value=81 Score=19.81 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 044256 9 MAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKL 81 (363)
Q Consensus 9 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 81 (363)
.+++.+.+.|+- +..-...+-. .....+.++|.++++.+.+.| ..+|...+.++...|+...|..+
T Consensus 25 ~vld~L~~~~vl--t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSRELF--RPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTSS--CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCC--CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHHH
Confidence 467888888765 3444443332 101257899999999999764 34688889888777776665433
No 334
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.01 E-value=1e+02 Score=20.37 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=9.1
Q ss_pred HHhcCChhHHHHHHHHHH
Q 044256 207 YCKNFNVEEAMNVSREMI 224 (363)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~ 224 (363)
....++++.|..+...+.
T Consensus 71 al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 344555555555544443
No 335
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.29 E-value=1.3e+02 Score=21.36 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 044256 165 YTPLLNGYCLVGKVNVAIALFDSMARKGFMPDV 197 (363)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 197 (363)
.+.+..+.........-.++.+.+.+.|..++.
T Consensus 141 ~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 141 YTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp CCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred CCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 344444333322233335566666666665543
No 336
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.09 E-value=1.1e+02 Score=20.48 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCC--hhHHHHHHHHHHHcCCCCCH
Q 044256 281 IFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQ--IKKENYLLLSMEENGCALDV 349 (363)
Q Consensus 281 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 349 (363)
....++.-|...|+.++|.+.++++..-.+ ....+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 346788889999999999999999863211 123344444555555432 45677888888777654433
No 337
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=32.47 E-value=51 Score=23.56 Aligned_cols=50 Identities=16% Similarity=0.099 Sum_probs=41.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTG 73 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 73 (363)
....++.++..++...-.++++..+.+....| ..+..+|---++.+++..
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQ 159 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQ 159 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999998 567777777777766643
No 338
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=32.36 E-value=84 Score=18.90 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=23.4
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 044256 54 GCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMV 86 (363)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 86 (363)
+++|++.||+-+..++-+..-..+++.+..++.
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 568899999988877766655566666655543
No 339
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=32.27 E-value=1.4e+02 Score=21.53 Aligned_cols=167 Identities=9% Similarity=-0.070 Sum_probs=88.2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcC
Q 044256 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239 (363)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 239 (363)
++...-...+..+.+.+..+.. ..+..+... ++...-...+.++.+.+..+. ...+..+..
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~-~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~-------------- 91 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAV-EPLIKALKD---EDAWVRRAAADALGQIGDERA-VEPLIKALK-------------- 91 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTTC---SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT--------------
T ss_pred CCHHHHHHHHHHHHHhCCccHH-HHHHHHHcC---CCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc--------------
Confidence 4555555556666666663333 333333332 455566666666666665332 222222211
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHH
Q 044256 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319 (363)
Q Consensus 240 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (363)
.++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.++...|+.+ +...+..+.. .++...-..
T Consensus 92 -~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~ 162 (211)
T 3ltm_A 92 -DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQS 162 (211)
T ss_dssp -CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHH
Confidence 255556666677777777643 3344444443 345556666677777777654 3444444443 345666666
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044256 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMIS 358 (363)
Q Consensus 320 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 358 (363)
.+.++.+.+. .++...+..+.+. ++...-...+.+
T Consensus 163 a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~a 197 (211)
T 3ltm_A 163 AADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNY 197 (211)
T ss_dssp HHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHH
T ss_pred HHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 6777777765 4566666666653 444444443433
No 340
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.20 E-value=2.2e+02 Score=23.62 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCCCCchh--hHHHHHHHHHhcCCHHHHHHHH
Q 044256 9 MAFGSFIRRCYRPLNDV--TFNSLIKGFCMEGNIRDASQLV 47 (363)
Q Consensus 9 ~~~~~~~~~~~~p~~~~--~~~~li~~~~~~~~~~~a~~~~ 47 (363)
++++.+.+.|..| +.. ...+.+...+..|+.+-+..++
T Consensus 28 ~~v~~Ll~~g~~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll 67 (437)
T 1n11_A 28 PIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLL 67 (437)
T ss_dssp HHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 4455555555554 321 1123344445566655444443
No 341
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.89 E-value=2.6e+02 Score=24.37 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc------H-HHHHHHHHhcCChhHHHHHHHHHHhc
Q 044256 24 DVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTT------C-DTLITGLRRTGNMNLTLKLHQEMVNG 88 (363)
Q Consensus 24 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 88 (363)
+..+|.+++.|...+.++.|..+..+..- +.+..+ | -.+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44577777777777778888777776641 111111 1 12344455567777777777776654
No 342
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.60 E-value=1.6e+02 Score=22.05 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 044256 296 EIASELFNKLSCKNLVA-DVVAYNILIHALGKEGQIKKENYLLLSMEENGCALD 348 (363)
Q Consensus 296 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 348 (363)
+.+..+|..|...|+-- -...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 35556666666655432 344555556666666777777777777666655553
No 343
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.07 E-value=1.7e+02 Score=22.13 Aligned_cols=137 Identities=12% Similarity=0.020 Sum_probs=71.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 044256 106 LIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAIALF 185 (363)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 185 (363)
-++.+....++++|..++++..+. +..+...+.. ........+..-.....-.-+..+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~--------------------l~~~~~~~~~-~~~~~~~~l~~ki~eR~~~L~~~L~ 82 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQ--------------------LEDLSERISD-EELMLLNLISLKIEQRREAISSKLS 82 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------------------HHHTC--------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH--------------------HHhCcccccc-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888888776542 1110000000 1112222233333333333444555
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 044256 186 DSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGLCKNGHVLEVME 265 (363)
Q Consensus 186 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 265 (363)
+++.. .++.......+..+.+.|+.++|.++|-+.... .+-..+..-+..-|+..|..=+.... -..+..+.+
T Consensus 83 ~~l~~---~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~---~i~~~~r~l~~~gd~~~Yi~~Ls~i~-Fs~I~~t~~ 155 (235)
T 2d2s_A 83 QSILS---SNEIVHLKSGTENMIKLGLPEQALDLFLQNRSN---FIQDLILQIGSVDNPTNYLTQLAVIR-FQTIKKTVE 155 (235)
T ss_dssp HHHHT---CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHHHHCC--CCSHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHh---cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHH---HHHHHHHHhcccCCHHHHHHHHHHHH-HHHHHHHHH
Confidence 55533 456666777778899999999999988777654 34444444455556666654433221 123445555
Q ss_pred HHHHH
Q 044256 266 LFPTL 270 (363)
Q Consensus 266 ~~~~~ 270 (363)
.|...
T Consensus 156 ~f~~~ 160 (235)
T 2d2s_A 156 DFQDI 160 (235)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 344
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.44 E-value=1.9e+02 Score=22.33 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=6.0
Q ss_pred HhcCCHHHHHHHHH
Q 044256 255 CKNGHVLEVMELFP 268 (363)
Q Consensus 255 ~~~~~~~~a~~~~~ 268 (363)
+..|+.+-+.-+++
T Consensus 169 ~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 169 IKNGHVDMMILLLD 182 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcChHHHHHHHHH
Confidence 34455444444433
No 345
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=30.40 E-value=1.1e+02 Score=19.46 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH-----HhcCCCCCcccHHH
Q 044256 7 ALMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGNIRDASQLVKKM-----ATFGCRPNVTTCDT 64 (363)
Q Consensus 7 A~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m-----~~~~~~~~~~~~~~ 64 (363)
|.++.+++...|+.| +..+...++..|...+- .+.++.++. ...|..|+..+.+.
T Consensus 28 ae~L~eEfdefGi~~-~d~VldKc~ELC~~y~l--da~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 28 AQQLAEELQIFGLDC-EEALIEKLVELCVQYGQ--NEEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp HHHHHHHHHHHTCBC-CHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 567777888888899 66888888888877764 233333322 23356666655544
No 346
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=30.09 E-value=1.6e+02 Score=21.55 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=8.9
Q ss_pred HHhcCChhHHHHHHHHH
Q 044256 207 YCKNFNVEEAMNVSREM 223 (363)
Q Consensus 207 ~~~~~~~~~a~~~~~~~ 223 (363)
....|+...++++.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKAL 233 (237)
T ss_dssp SCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555565555554443
No 347
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=29.50 E-value=78 Score=21.04 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHH
Q 044256 246 TCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASEL 301 (363)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 301 (363)
.|.-.|...+..++.+-|.++++-.++.| +...|.+.+-.|...=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 45555666666667777777777666655 445566666666655555555543
No 348
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=29.47 E-value=97 Score=22.57 Aligned_cols=71 Identities=14% Similarity=-0.027 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHH
Q 044256 259 HVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLL 338 (363)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 338 (363)
+.....++.+.+... ..+-.-...+|.++.+.|++++|.+++.++... .. .... ..+.+++.-|--++.
T Consensus 14 ~l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~-----~q---~~~~-~~~i~~P~la~lLl~ 82 (192)
T 1ixm_A 14 DTALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID-----AK---HESK-LSNLKTPHLAFDFLT 82 (192)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HH---HHHH-HHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HH---HHHH-HHhCCCHHHHHHHHH
Confidence 344455555555443 233444456788888888888888888887643 11 1111 445566655555544
Q ss_pred HH
Q 044256 339 SM 340 (363)
Q Consensus 339 ~m 340 (363)
+.
T Consensus 83 K~ 84 (192)
T 1ixm_A 83 FN 84 (192)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 349
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.63 E-value=1.3e+02 Score=24.35 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 247 CNIFIDGLCKNGHVLEVMELFPTLE 271 (363)
Q Consensus 247 ~~~ll~~~~~~~~~~~a~~~~~~~~ 271 (363)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556777888888888888888775
No 350
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.42 E-value=2.8e+02 Score=23.75 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=65.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcCCCCChHHHHHHHHHH
Q 044256 175 VGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCNVVPETFTCNIFIDGL 254 (363)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 254 (363)
..+.+-|.++-. +.|++--...|..-...+...|++++|..+-... ..|+--+..|.+.+-.+=
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~s-------------P~giLRt~~Ti~rFk~vp 405 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANA-------------PKGILRTPDTIRRFQSVP 405 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS-------------GGGSSCSHHHHHHHTTSC
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhC-------------ccccccCHHHHHHHhcCC
Confidence 466666655543 3444444455666677788899999997654332 223444555655554444
Q ss_pred HhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 044256 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNK 304 (363)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 304 (363)
...|+..-.+.+|..+.+.| ..+..--.-+++.-...|+.+-..+.+.+
T Consensus 406 ~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 406 AQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp CCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 44566666667777776665 44544444455555566666655555544
No 351
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=28.14 E-value=1.6e+02 Score=20.95 Aligned_cols=168 Identities=10% Similarity=-0.058 Sum_probs=91.7
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhHhcC
Q 044256 160 PVIFTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREMILNGFKKIFNEMKLCN 239 (363)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 239 (363)
++...-...+..+.+.+..+....+.+. .. .++...-...+.++...+..+.. ..+..+..
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~-l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~-------------- 86 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKA-LK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK-------------- 86 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHH-TT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT--------------
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHH-Hc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc--------------
Confidence 4555555566666666654433333333 33 24555555666666666654332 22222211
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHH
Q 044256 240 VVPETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNI 319 (363)
Q Consensus 240 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (363)
.++..+-...+.++.+.++.+. ...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++...-..
T Consensus 87 -d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~ 157 (201)
T 3ltj_A 87 -DEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQS 157 (201)
T ss_dssp -CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHH
Confidence 2566666667777777776543 333333433 345566666677777777654 4444444443 246666667
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044256 320 LIHALGKEGQIKKENYLLLSMEENGCALDVDTFNTLMISF 359 (363)
Q Consensus 320 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 359 (363)
.+.++.+.|. +++...+..+... ++...-...+.++
T Consensus 158 A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL 193 (201)
T 3ltj_A 158 AADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYL 193 (201)
T ss_dssp HHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHH
T ss_pred HHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 7777777776 4566666666653 4554444444444
No 352
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.41 E-value=1.2e+02 Score=19.02 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044256 25 VTFNSLIKGFCMEGNIRDASQLVKKMA 51 (363)
Q Consensus 25 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 51 (363)
..+....+.+.+.|++++|++..++..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 445566778888999999988777654
No 353
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.14 E-value=2.1e+02 Score=21.84 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=6.9
Q ss_pred chhhHHHHHHHHHhcC
Q 044256 23 NDVTFNSLIKGFCMEG 38 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~ 38 (363)
+...-...+.++.+.+
T Consensus 36 ~~~vr~~A~~~L~~~~ 51 (280)
T 1oyz_A 36 NSLKRISSARVLQLRG 51 (280)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHccC
Confidence 3333334444444444
No 354
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.28 E-value=90 Score=22.34 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhc
Q 044256 242 PETFTCNIFIDGLCKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292 (363)
Q Consensus 242 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 292 (363)
|....++.++..++...-++.++-.+.++...| ..+..+|.--++.+++.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQ 158 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 455566777777777777777777777777776 45566666555555543
No 355
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.26 E-value=2e+02 Score=21.22 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=40.6
Q ss_pred HhcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCC-----hHHHHHHHHHhhhCCCC
Q 044256 255 CKNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI-----FEIASELFNKLSCKNLV 311 (363)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~ 311 (363)
.+..+++.|+-.+.+|++.| .|....-..++.+.-.-|. ...|...++.....|.+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35679999999999999999 7766666666666666654 44556666776677754
No 356
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=25.84 E-value=2.6e+02 Score=22.47 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhccCcchHH--HHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 044256 260 VLEVMELFPTLEISNCELFVE--IFNSLIRGCCKFGIFEIASELFNKLSCKN 309 (363)
Q Consensus 260 ~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 309 (363)
..+..++-..+...++.|... +...-+....+.+++..|-.+-+++++.+
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 344555555555555444322 33445555667777777777777777664
No 357
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=24.45 E-value=2e+02 Score=20.58 Aligned_cols=33 Identities=3% Similarity=0.029 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 044256 179 NVAIALFDSMARKGFMPDVFSYSVLINGYCKNF 211 (363)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 211 (363)
+....+++.+.+.|.-.|...-...+....+.|
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~ 82 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTS 82 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcc
Confidence 344555556666665544444444555444433
No 358
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.37 E-value=1.9e+02 Score=20.54 Aligned_cols=151 Identities=9% Similarity=0.005 Sum_probs=72.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCchhh
Q 044256 23 NDVTFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPNVFC 102 (363)
Q Consensus 23 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
+...-...+..+.+.+..+ +...+-++.. .++...-...+.++...+..+ +...+..+.. .++..+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---------d~~~~v 92 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---------DEDGWV 92 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---------CSSHHH
T ss_pred CHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---------CCCHHH
Confidence 5555555556666655533 2333333332 344444445555555555433 3333333332 344555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcchhhhccCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 044256 103 YGSLIDGLCKDRLVDQTKDLFMEMKDKGINANTLLCKKTKLVEANRLLELMMQRGLNPVIFTYTPLLNGYCLVGKVNVAI 182 (363)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (363)
-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.++.+ +.
T Consensus 93 r~~a~~aL~~~~~~~-~~~~L~~~l~------------------------------d~~~~vr~~a~~aL~~~~~~~-~~ 140 (201)
T 3ltj_A 93 RQSAAVALGQIGDER-AVEPLIKALK------------------------------DEDWFVRIAAAFALGEIGDER-AV 140 (201)
T ss_dssp HHHHHHHHHHHCCGG-GHHHHHHHTT------------------------------CSSHHHHHHHHHHHHHHTCGG-GH
T ss_pred HHHHHHHHHHhCcHH-HHHHHHHHHc------------------------------CCCHHHHHHHHHHHHHhCCHH-HH
Confidence 555555555555432 1222222211 345455555666666666543 33
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 044256 183 ALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNVSREM 223 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (363)
..+..+... ++...-...+.++.+.|. .++...+..+
T Consensus 141 ~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~~~~~~L~~~ 177 (201)
T 3ltj_A 141 EPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKL 177 (201)
T ss_dssp HHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 344444432 466666666677776665 3344444443
No 359
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=24.10 E-value=75 Score=21.13 Aligned_cols=54 Identities=6% Similarity=0.027 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCChhHHHHH
Q 044256 163 FTYTPLLNGYCLVGKVNVAIALFDSMARKGFMPDVFSYSVLINGYCKNFNVEEAMNV 219 (363)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 219 (363)
..|.-.|...+..++.+-|+++++-..+.| +...|.+.+-.|...=+++-++++
T Consensus 33 kLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 33 SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 356667788888899999999999988876 778888888888888888777643
No 360
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.59 E-value=3.1e+02 Score=24.13 Aligned_cols=92 Identities=7% Similarity=-0.042 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCccCCc
Q 044256 22 LNDVTFNSLIKGFC--MEGNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQEMVNGMGDFGGIYKPN 99 (363)
Q Consensus 22 ~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+...|..-|..+. ...+........+.++.+=.--+..--.-++..|.+.|-.+.|.++++.+-... -.+
T Consensus 477 ~~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~-------l~~ 549 (570)
T 3f3f_C 477 GDKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQM-------LSA 549 (570)
T ss_dssp CCTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC------------
T ss_pred cCCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH-------HHC
Q ss_pred hhhHHHHHHHHHhcCCHHHHHH
Q 044256 100 VFCYGSLIDGLCKDRLVDQTKD 121 (363)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~ 121 (363)
...+ ..+..|+|+|+++.+..
T Consensus 550 g~~g-eAL~~f~rA~~~~~Vk~ 570 (570)
T 3f3f_C 550 HNII-ESIANFSRAGKYELVKS 570 (570)
T ss_dssp ----------------------
T ss_pred ccHH-HHHHHHHHcCChhhccC
No 361
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=23.48 E-value=1.9e+02 Score=20.06 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHhc----cCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 044256 259 HVLEVMELFPTLEIS----NCELFVEIFNSLIRGCCKFGIFEIASELFNKLSC 307 (363)
Q Consensus 259 ~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 307 (363)
+++.+......++-. |. ........-+..+++.|+.+.+...+..+..
T Consensus 70 D~~~l~~~aH~LKGss~~lGa-~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 70 DFKKVDAHVHQFKGSSASIGA-QRVKNSCVAFRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555554422 21 1222334445556667777777666666653
No 362
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.45 E-value=1e+02 Score=16.93 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCCCchhhHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 044256 8 LMAFGSFIRRCYRPLNDVTFNSLIKGFCMEGN--IRDASQLVKKMA 51 (363)
Q Consensus 8 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~ 51 (363)
.+.++.+.+.|..+ . ....++.+.|+ ++.|++++.+|-
T Consensus 10 ~qmlq~L~eMGFd~-e-----rae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 10 RQMLQELVNAGCDQ-E-----MAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHHCCH-H-----HHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCH-H-----HHHHHHHHhCcccHHHHHHHHHHhc
Confidence 34455555655554 2 23334444444 777777766664
No 363
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=23.29 E-value=1.1e+02 Score=17.97 Aligned_cols=33 Identities=9% Similarity=0.073 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhc
Q 044256 39 NIRDASQLVKKMATF-GCRPNVTTCDTLITGLRRT 72 (363)
Q Consensus 39 ~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~ 72 (363)
..++|...|.+|+.. ++. ...+|...+..+..-
T Consensus 13 t~eea~~~F~~LL~e~~V~-~~~tWe~~~~~i~~D 46 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVP-SNASWEQAMKMIIND 46 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCC-TTCCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHcCcC-CCCCHHHHHHHHccC
Confidence 456677777776654 333 334666666665543
No 364
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.24 E-value=2.6e+02 Score=21.52 Aligned_cols=47 Identities=13% Similarity=-0.015 Sum_probs=21.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCChhHHHH
Q 044256 168 LLNGYCLVGKVNVAIALFDSMARKGFMP-DVFSYSVLINGYCKNFNVEEAMN 218 (363)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 218 (363)
.+...+..|+.+-+..+ .+.|..+ +...-.+.+...+..|..+-+.-
T Consensus 132 ~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYF----LSEIPSTFDLAILLSCIHITIKNGHVDMMIL 179 (285)
T ss_dssp HHHHHHHTTCHHHHHHH----HTTSCTTCCCSTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH----HhCCCccccccCCccHHHHHHHcChHHHHHH
Confidence 34445556766544443 3444332 21122333444455666655443
No 365
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=22.85 E-value=5.2e+02 Score=25.86 Aligned_cols=79 Identities=13% Similarity=0.014 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCccHHHHHHHHHHHHccCChhHHHHHHHH
Q 044256 260 VLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFNKLSCKNLVADVVAYNILIHALGKEGQIKKENYLLLS 339 (363)
Q Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 339 (363)
.+...+.|.++.+.--.-|.......+.--..++++..|.+++.++.+. +|....|..++..+...| |+-...+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 3444555555554421112222222222223567888888888888766 367777777776665555 4444444555
Q ss_pred HH
Q 044256 340 ME 341 (363)
Q Consensus 340 m~ 341 (363)
+.
T Consensus 1342 ~~ 1343 (1354)
T 3lxu_X 1342 MM 1343 (1354)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 366
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=22.55 E-value=1.9e+02 Score=22.38 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=42.1
Q ss_pred CCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCh
Q 044256 18 CYRPLNDVTFNSLIKGFCMEG-NIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNM 75 (363)
Q Consensus 18 ~~~p~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 75 (363)
...|.++.+.+.+..+....| .-.+.+.+|+.+.+. ..+..-|+.++++...-++.
T Consensus 32 ~h~plspr~l~~~~k~ve~~g~~sPe~i~~f~ALse~--~~TP~D~~~ml~avlgg~q~ 88 (262)
T 1d1d_A 32 AWTPLEPKLITRLADTVRTKGLRSPITMAEVEALMSS--PLLPHDVTNLMRVILGPAPY 88 (262)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCTTSSHHHHHHHHHHTS--CCCHHHHHHHHHHHSCHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHcC--CCChHHHHHHHHHHcChHHH
Confidence 457889999999999998888 468899999866542 35667789999887444443
No 367
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.52 E-value=3.8e+02 Score=23.17 Aligned_cols=46 Identities=7% Similarity=-0.093 Sum_probs=24.1
Q ss_pred cCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 044256 257 NGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGIFEIASELFN 303 (363)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 303 (363)
...++.|...|..+.... |-+...|+.|.......|+.-.|.-.|-
T Consensus 165 ~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~ 210 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHH
Confidence 344556666666655543 4445556655555555555444444333
No 368
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.21 E-value=2.5e+02 Score=20.90 Aligned_cols=62 Identities=8% Similarity=0.125 Sum_probs=43.7
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcCC-----hHHHHHHHHHhhhCCCC
Q 044256 250 FIDGLC---KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKFGI-----FEIASELFNKLSCKNLV 311 (363)
Q Consensus 250 ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~ 311 (363)
+|+++. +..+++.|+-.+.+|++.|-.|....-..++.+.-.-|. ...|...++.....|.+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 445543 567999999999999999977766665666666655553 45666677777777754
No 369
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=22.03 E-value=1.3e+02 Score=18.24 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcC
Q 044256 40 IRDASQLVKKMATF-GCRPNVTTCDTLITGLRRTG 73 (363)
Q Consensus 40 ~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~ 73 (363)
.++|...|..|+.. +|.| ..+|...+...+.--
T Consensus 16 ~eea~~~Fk~LL~e~~V~p-~~tWe~~~~~i~~Dp 49 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSA-FSTWEKELHKIVFDP 49 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCS-SSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHcCcCC-CCCHHHHHHHHccCC
Confidence 46667777776654 4433 346666666555433
No 370
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.94 E-value=6.1e+02 Score=25.39 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=17.3
Q ss_pred hcCCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhc
Q 044256 256 KNGHVLEVMELFPTLEISNCELFVEIFNSLIRGCCKF 292 (363)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 292 (363)
..+++-.|++++.++.+.. |+...|..++..+...
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l 1330 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGAL 1330 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHc
Confidence 3455555555555555442 3444555555444433
No 371
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=21.59 E-value=3.6e+02 Score=23.97 Aligned_cols=23 Identities=17% Similarity=0.013 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 044256 245 FTCNIFIDGLCKNGHVLEVMELF 267 (363)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~ 267 (363)
..+..++...++.|++.+.+--+
T Consensus 86 ~~s~~iL~~la~lcnPrEvil~l 108 (596)
T 4f52_E 86 KVYFLIFDLLVKLCNPKELLLGL 108 (596)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHH
T ss_pred hHHHHHHHHHHHhCCHHHHHHHH
Confidence 35556666677777777665433
No 372
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=21.07 E-value=1.1e+02 Score=20.15 Aligned_cols=17 Identities=12% Similarity=-0.136 Sum_probs=10.0
Q ss_pred hcCChHHHHHHHHHhhh
Q 044256 291 KFGIFEIASELFNKLSC 307 (363)
Q Consensus 291 ~~~~~~~a~~~~~~~~~ 307 (363)
-..+-++|..+++++..
T Consensus 30 GkER~~~Ai~II~~Ll~ 46 (118)
T 2zrr_A 30 GDDRRKKAEVIITELLD 46 (118)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34456666666666654
No 373
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=20.46 E-value=91 Score=20.16 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 044256 38 GNIRDASQLVKKMATFGCRPNVTTCDTLITGLRRTGNMNLTLKLHQE 84 (363)
Q Consensus 38 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 84 (363)
+..+.+.+++..-... .....|...|+.++.+.+.-+-|..+...
T Consensus 55 ~~~eq~~~mL~~W~~r--~G~~AT~~~L~~AL~~~~~~dvae~l~~~ 99 (110)
T 1wxp_A 55 DMKMRAKQLLVAWQDQ--EGVHATPENLINALNKSGLSDLAESLTND 99 (110)
T ss_dssp SHHHHHHHHHHHHHHH--HGGGCCHHHHHHHHHHTTCHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 3345667766665543 12346788888888888887777665543
No 374
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.42 E-value=2.2e+02 Score=24.27 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--------cHH-HHHHHHHhcCChhHHHHHHHHHHhc
Q 044256 26 TFNSLIKGFCMEGNIRDASQLVKKMATFGCRPNVT--------TCD-TLITGLRRTGNMNLTLKLHQEMVNG 88 (363)
Q Consensus 26 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--------~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 88 (363)
..|.+...|.+.++...+..++..+...+..|+.. +|. -+.+.+...+++.+|.+.+..+...
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 46778899999999999999999998876544433 232 3455667788999999998888774
Done!