BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044257
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 118/268 (44%), Gaps = 67/268 (25%)
Query: 66 ICDAAENWGFFQIVNHGVALEVLERVKEAT---------HRFFALPAEE----------- 105
I DA ENWGFF++VNHG+ EV + V++ T RF L A +
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEVTD 83
Query: 106 ---KRKYSKENSPTKNV-----------RYGSSFAPHVER-ALEWKDFL----------- 139
+ + ++ P N+ FA +E+ A E D L
Sbjct: 84 XDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYL 143
Query: 140 -SLFYVSEEET----SAFWPLVCKDEMLEYMRS-----------SEDDIGGLHVRKDNGT 183
+ FY S+ + +P K ++++ +R+ +D + GL + KD
Sbjct: 144 KNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQ- 202
Query: 184 GWIHAAPISGSLIINIGDALQIMSNGRNKSIEHCVIANGSQNRISVPLFVNPKPEAILCP 243
WI P S+++N+GD L++++NG+ KS+ H VIA R S+ F NP +A++ P
Sbjct: 203 -WIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYP 261
Query: 244 FPEVL---ANGEKPLYKPVLYADYSRHF 268
P ++ A K +Y ++ DY + +
Sbjct: 262 APALVEKEAEENKQVYPKFVFDDYXKLY 289
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 25/158 (15%)
Query: 27 VKGLSEKGLKSLPKQFHQPLEERFSEKRIL-----DQSPEVAKF---------------- 65
V+ L++ G+ S+PK++ +P EE S + + P+V
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 66 ---ICDAAENWGFFQIVNHGVALEVLERVKEATHRFFALPAEEKRKYSKENSPTKNVRYG 122
+ A+ +WG ++NHG+ +++ERVK+A FF+L EEK KY+ + + K YG
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 123 SSFAPHVERALEWKD-FLSLFYVSEEETSAFWPLVCKD 159
S A + LEW+D F L Y E+ + WP D
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSD 164
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 185 WIHAAPISGSLIINIGDALQIMSNGRNKSIEHCVIANGSQNRISVPLFVN-PKPEAILCP 243
W+ A + S++++IGD L+I+SNG+ KSI H + N + RIS +F PK + +L P
Sbjct: 257 WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKP 316
Query: 244 FPEVLANGEKPLYKPVLYADYSRH 267
PE+++ + P +A + H
Sbjct: 317 LPEMVSVESPAKFPPRTFAQHIEH 340
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 25/158 (15%)
Query: 27 VKGLSEKGLKSLPKQFHQPLEERFSEKRIL-----DQSPEVAKF---------------- 65
V+ L++ G+ S+PK++ +P EE S + + P+V
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 66 ---ICDAAENWGFFQIVNHGVALEVLERVKEATHRFFALPAEEKRKYSKENSPTKNVRYG 122
+ A+ +WG ++NHG+ +++ERVK+A FF+L EEK KY+ + + K YG
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 123 SSFAPHVERALEWKD-FLSLFYVSEEETSAFWPLVCKD 159
S A + LEW+D F L Y E+ + WP D
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSD 163
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 185 WIHAAPISGSLIINIGDALQIMSNGRNKSIEHCVIANGSQNRISVPLFVN-PKPEAILCP 243
W+ A + S++++IGD L+I+SNG+ KSI H + N + RIS +F PK + +L P
Sbjct: 256 WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKP 315
Query: 244 FPEVLANGEKPLYKPVLYADYSRH 267
PE+++ + P +A + H
Sbjct: 316 LPEMVSVESPAKFPPRTFAQHIEH 339
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 27 VKGLSEKGLKSLPKQFHQPLEERFSEKRIL-----DQSPEVAKF---------------- 65
V+ L++ G+ S+PK++ +P EE S + + P+V
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 66 ---ICDAAENWGFFQIVNHGVALEVLERVKEATHRFFALPAEEKRKYSKENSPTKNVRYG 122
+ A+ +WG ++NHG+ ++ ERVK+A FF+L EEK KY+ + + K YG
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 123 SSFAPHVERALEWKD-FLSLFYVSEEETSAFWPLVCKD 159
S A + LEW+D F L Y E+ + WP D
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSD 164
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 185 WIHAAPISGSLIINIGDALQIMSNGRNKSIEHCVIANGSQNRISVPLFVN-PKPEAILCP 243
W+ A + S++ +IGD L+I+SNG+ KSI H + N + RIS +F PK + +L P
Sbjct: 257 WVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKP 316
Query: 244 FPEVLANGEKPLYKPVLYADYSRH 267
PE ++ + P +A + H
Sbjct: 317 LPEXVSVESPAKFPPRTFAQHIEH 340
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 174 GLHVRKDNGTGWIHAAPISGSLIINIGDALQIMSNGRNKSIEHCVI----ANGSQNRISV 229
GL V+ +G+ W+ G++IINIGD LQ S+G S H VI + +++RIS+
Sbjct: 190 GLQVKAKDGS-WLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISL 248
Query: 230 PLFVNPKPEAILC 242
PLF++P P +L
Sbjct: 249 PLFLHPHPSVVLS 261
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 173 GGLHVRKDNGTGWIHAAPISGSLIINIGDALQIMSNGRNKSIEHCVIANGSQNRISVPLF 232
GGL V +G W+ P G L+INIGD L+ ++N S H V+ N R VP +
Sbjct: 206 GGLEVLDRDGQ-WLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV-NPPPERRGVPRY 263
Query: 233 VNP 235
P
Sbjct: 264 STP 266
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 71 ENWGFFQIVNHGVALEVLERVKEATHRFFALPAEEKRKYS 110
E +GF + ++ + ++ ++ FFALP E K++Y+
Sbjct: 31 ERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYA 70
>pdb|3C6L|B Chain B, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|F Chain F, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
Length = 236
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 20 VIHKGHGVKGLSEKGLKSLPKQFHQPLEERFSEKRILDQSPEVAKFICDAAENWGFFQIV 79
+IH +G G +EKG + +P +E FS L + + + C + + WG+ Q
Sbjct: 43 LIHYSYGA-GSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDAWGYEQYF 101
Query: 80 NHGVALEVLERVKEATHRFFALPAEEKRKYSKENSPTKNVRYGSSFAPHVERALEW 135
G L VLE +++ T +L K + + + T F HVE L W
Sbjct: 102 GPGTRLTVLEDLRDVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVE--LSW 155
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 62 VAKFICDAAENWGFFQIVNHGVALEVLERVKEATHRFFALPAEEK-----RKYSKENSPT 116
VA+ I A+ + GFF VNHG+ ++ L + + H ++ EEK R Y+KE+
Sbjct: 28 VAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSITPEEKWDLAIRAYNKEHQ-- 83
Query: 117 KNVRYGSSFAPHVERALE 134
VR G + ++A+E
Sbjct: 84 DQVRAGYYLSIPGKKAVE 101
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 196 IINIGDALQIMSNGRNKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPL 255
+IN G + ++N K+ H V ++ R S+P FVN ++++ PF NG K
Sbjct: 250 LINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDPFDPREPNG-KSD 307
Query: 256 YKPVLYADY 264
+P+ Y DY
Sbjct: 308 REPLSYGDY 316
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 62 VAKFICDAAENWGFFQIVNHGVALEVLERVKEATHRFFALPAEEK-----RKYSKENSPT 116
VA+ I A+ + GFF VNHG+ ++ L + + H ++ EEK R Y+KE+
Sbjct: 28 VAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSITPEEKWDLAIRAYNKEHQ-- 83
Query: 117 KNVRYGSSFAPHVERALE 134
VR G + ++A+E
Sbjct: 84 DQVRAGYYLSIPGKKAVE 101
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 196 IINIGDALQIMSNGRNKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPL 255
+IN G + ++N K+ H V ++ R S+P FVN ++++ PF NG K
Sbjct: 250 LINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDPFDPREPNG-KSD 307
Query: 256 YKPVLYADY 264
+P+ Y DY
Sbjct: 308 REPLSYGDY 316
>pdb|3RDT|B Chain B, Crystal Structure Of 809.B5 Tcr Complexed With Mhc Class
Ii I-Ab3K Peptide
Length = 241
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 20 VIHKGHGVKGLSEKGLKSLPKQFHQPLEERFSEKRILDQSPEVAKFICDAAENWGFFQIV 79
+IH +G G +EKG + +P +E FS L + + + C + + WG
Sbjct: 44 LIHYSYGA-GSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDFWGDTLYF 102
Query: 80 NHGVALEVLERVK 92
G L VLE +K
Sbjct: 103 GAGTRLSVLEDLK 115
>pdb|3C60|B Chain B, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C60|F Chain F, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3RGV|B Chain B, A Single Tcr Bound To Mhci And Mhc Ii Reveals Switchable
Tcr Conformers
Length = 236
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 20 VIHKGHGVKGLSEKGLKSLPKQFHQPLEERFSEKRILDQSPEVAKFICDAAENWGFFQIV 79
+IH +G G +EKG + +P +E FS L + + + C + + WG
Sbjct: 43 LIHYSYGA-GSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDFWGDTLYF 101
Query: 80 NHGVALEVLERVK 92
G L VLE +K
Sbjct: 102 GAGTRLSVLEDLK 114
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 189 APISGSLIINIGDALQIMSNGRNKSIEHCVIANGSQNRISVPLFVNP 235
A I+G+L++NIG +S+E +IA S N VP+ ++P
Sbjct: 68 AKIAGALVLNIGTL-------SKESVEAMIIAGKSANEHGVPVILDP 107
>pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKK|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKQ|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
pdb|1EKQ|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
Length = 272
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 189 APISGSLIINIGDALQIMSNGRNKSIEHCVIANGSQNRISVPLFVNP 235
A I+G+L++NIG +S+E +IA S N VP+ ++P
Sbjct: 56 AKIAGALVLNIGTL-------SKESVEAMIIAGKSANEHGVPVILDP 95
>pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|B Chain B, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|C Chain C, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
Length = 284
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 189 APISGSLIINIGDALQIMSNGRNKSIEHCVIANGSQNRISVPLFVNP 235
A I+G+L++NIG +S+E +IA S N VP+ ++P
Sbjct: 68 AKIAGALVLNIGTL-------SKESVEAMIIAGKSANEHGVPVILDP 107
>pdb|2JH1|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
1
Length = 246
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 77 QIVNHGVALEVLER-VKEATHRFFALPAEEKRKYSKENSPTKNVRYGSSFAPHVERALEW 135
Q NH E+L + V+E RF + KY + P R F +VE A
Sbjct: 104 QNSNHATRHEILSKLVEEGVQRFCSPYQASANKYCNDKFPGTIARRSKGFGNNVEVAWRC 163
Query: 136 KDFLSLFY 143
+ SL Y
Sbjct: 164 YEKASLLY 171
>pdb|2JH7|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
1 Bound To 6'-Sialyl-N-Acetyllactosamine
pdb|2JHD|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
1 Bound To 3'-Sialyl-N-Acetyllactosamine
pdb|3F53|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
1 Bound To 2f-3'sialacnac
pdb|3F5A|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
1 Bound To 3'sialacnac1-3
pdb|3F5E|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
1 Bound To 2'f-3'sialacnac1-3
Length = 246
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 77 QIVNHGVALEVLER-VKEATHRFFALPAEEKRKYSKENSPTKNVRYGSSFAPHVERALEW 135
Q NH E+L + V+E RF + KY + P R F +VE A
Sbjct: 104 QNSNHATRHEILSKLVEEGVQRFCSPYQASANKYCNDKFPGTIARRSKGFGNNVEVAWRC 163
Query: 136 KDFLSLFY 143
+ SL Y
Sbjct: 164 YEKASLLY 171
>pdb|1JJU|A Chain A, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
pdb|1PBY|A Chain A, Structure Of The Phenylhydrazine Adduct Of The
Quinohemoprotein Amine Dehydrogenase From Paracoccus
Denitrificans At 1.7 A Resolution
Length = 489
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 80 NHGVALEVLERVKEATH----RFFALPAEEKRKYSKENSP 115
NHGVALE ER H R +L E+R+Y E P
Sbjct: 46 NHGVALEPEERAAIVRHLSDTRGLSLAETEERRYILEREP 85
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 172 IGGLHVRKDNGTGWIHAAPISG 193
I G HV D GTG +H AP G
Sbjct: 310 INGDHVTTDAGTGCVHTAPGHG 331
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 16 IVDFVIHKGHGVKGLSEKGLKSLPKQFHQPLEERF 50
I+ ++IHKG G+SE+ L L + H P EE++
Sbjct: 406 ILLYIIHKG----GISEENLAKLVQHAHIPAEEKW 436
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 16 IVDFVIHKGHGVKGLSEKGLKSLPKQFHQPLEERF 50
I+ ++IHKG G+SE+ L L + H P EE++
Sbjct: 406 ILLYIIHKG----GISEENLAKLVQHAHIPAEEKW 436
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,286,452
Number of Sequences: 62578
Number of extensions: 393536
Number of successful extensions: 913
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 874
Number of HSP's gapped (non-prelim): 69
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)