BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044260
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 124/320 (38%), Gaps = 75/320 (23%)
Query: 171 EARKEAECVMFGALDELFAKTSLKPKDIGILI-VNCSLFNPTPSLSAMVINHYKLRGNIV 229
EA+ V+ ALD+ L DI ++I V+C+ F PSL+A +IN
Sbjct: 83 EAKSRVPAVIQRALDD----AELLATDIDVIIYVSCTGFM-MPSLTAWLINEMGFDSTTR 137
Query: 230 SYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVISMENITLNWYFGN-ERSMLVSNCLFR 288
+ +GC+AG +I+ A D +P + AL+++ E +L + + L+ N LF
Sbjct: 138 QIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCYQPTDLGVGSLLCNGLFG 197
Query: 289 MGGAAILLSNKRSDRWRSKYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMA 348
G AA ++ + G GV L ++
Sbjct: 198 DGIAAAVVRGR------------------------------------GGTGVRLERN--- 218
Query: 349 VAGDALKTNITTLGPLVLPMSEQLLFFAT------LVARKVFKLKIKPYIPDFK-LAFEH 401
G ++P +E + + + K ++P P K LA EH
Sbjct: 219 -------------GSYLIPKTEDWIMYDVKATGFHFLLDKRVPATMEPLAPALKELAGEH 265
Query: 402 ---------FCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSE 452
+ +HAGG +LD+L L++ SR TL +GN +S+ + L
Sbjct: 266 GWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLF 325
Query: 453 AKGRIKRGDRTWQIAFGSGF 472
+G ++ G R FG G
Sbjct: 326 DEGGVEEGARGLLAGFGPGI 345
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 147/352 (41%), Gaps = 53/352 (15%)
Query: 140 FQRKILERSGL-GESTYLPEAVLRVPPNPCM--AEARKEAECVMFGALDELFAKTSLKP- 195
FQR I ER+ + YL E +L+ PN C A + E +M + + + + K
Sbjct: 57 FQR-ICERTQIKNRHMYLTEEILKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAI 115
Query: 196 -------KDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLA 248
I LI + P + +I L ++ Y + GC AG + LA
Sbjct: 116 KEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLA 175
Query: 249 KDLLQVHPNSYALVISMENITLNWYFGNERSM--LVSNCLFRMGGAAILLSNKRSDRWRS 306
KDL + + ++ L++ EN ++ + +E M LV LF G AAI++
Sbjct: 176 KDLAENNKDARVLIVCSENTSVTFRGPSETDMDSLVGQALFADGAAAIII---------- 225
Query: 307 KYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVL 366
G+D V + E+P I VS + L+ + A+ + +G L
Sbjct: 226 ------------GSDP-----VPEVENPLFEI-VSTDQQLVPNSHGAIGGLLREVG-LTF 266
Query: 367 PMSEQLLFFATLVARKVFKLKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRH 425
+++ + + P I D+ F + H GGRA+LD++E+ + L
Sbjct: 267 YLNKSVPDIISQNINDALSKAFDPLGISDYNSIF--WIAHPGGRAILDQVEEKVNLKPEK 324
Query: 426 MEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
M+ +R L +GN SS+ +++ + K ++ G +T W + FG G
Sbjct: 325 MKATRDVLSNYGNMSSACVFFIMDLMRKKS-LEAGLKTTGEGLDWGVLFGFG 375
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 116/292 (39%), Gaps = 43/292 (14%)
Query: 212 PSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVISMENITLN 271
P ++ L ++ Y L G +AG + LAKDL + + S L++ E +
Sbjct: 143 PGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAENNKGSRVLIVCSEITAIL 202
Query: 272 WYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGADDKCFSCV 328
++ NE + LV+ LF G AA+++ S R + +V T +T +K
Sbjct: 203 FHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPIFEIVSTDQTILPDTEKAMKLH 262
Query: 329 TQQEDPTGRIGVSLSKDL-MAVAGDALKTNITTLGPLVLPMSEQLLFFATLVARKVFKLK 387
++ G + L +D+ + VA + L PL
Sbjct: 263 LRE----GGLTFQLHRDVPLMVAKNIENAAEKALSPL----------------------- 295
Query: 388 IKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLWY- 446
I D+ F + +H GGRA+LD++E+ L L + + SR L +GN S+ + +
Sbjct: 296 ---GITDWNSVF--WMVHPGGRAILDQVERKLNLKEDKLRASRHVLSEYGNLISACVLFI 350
Query: 447 -----ELAYSEAKGRIKRG-DRTWQIAFGSGFKCNSAVWKALRTINPAKEKN 492
+ + +E K G D FG G + V +++R N
Sbjct: 351 IDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRSVRVTAAVANGN 402
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 131/337 (38%), Gaps = 53/337 (15%)
Query: 155 YLPEAVLRVPPNPC--MAEARKEAECVMFGALDELFAKTSLK-------PKDIGILIVNC 205
YL E +L+ PN C MA + + ++ + L + ++K PK ++ C
Sbjct: 75 YLTEEILKENPNVCEYMAPSLDARQAMLAMEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 134
Query: 206 SLFNPT-PSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
S P P + LR + + GC AG + LAKDL + + + LV+
Sbjct: 135 STTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLAENNKGARVLVVC 194
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV LF G AA+++ S+ + + + +V T +T
Sbjct: 195 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 254
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ ++ L+ L D + NIT
Sbjct: 255 EGAIDGHLRE--------AGLTFHLKGAVPDIVSKNIT---------------------- 284
Query: 382 KVFKLKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTS 440
K +P I D+ F + H GG A+LD++E+ L L M +R L +GN S
Sbjct: 285 KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMS 342
Query: 441 SSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
S+ + + L K + G +T W + FG G
Sbjct: 343 SACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 378
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 136/337 (40%), Gaps = 53/337 (15%)
Query: 155 YLPEAVLRVPPNPC--MA---EARKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
YL E +L+ PN C MA +AR++ V L + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
+ P + LR + Y + GC AG + LAKDL + + + LV+
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV LF G AA+++ S+ + + + +V T +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ ++ T L KD+ + + NIT
Sbjct: 251 EGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT---------------------- 280
Query: 382 KVFKLKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTS 440
K +P I D+ F + H GG A+LD++E+ L L M +R L +GN S
Sbjct: 281 KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMS 338
Query: 441 SSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
S+ + + L K + G +T W + FG G
Sbjct: 339 SACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 374
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 147/371 (39%), Gaps = 69/371 (18%)
Query: 142 RKILERSGLGES-TYLPEAVLRVPPNPCM------AEARKEAECVMFGALDELFAKTSLK 194
++I ERS + + YL E +L+ P+ C +AR+ + L + A+ +++
Sbjct: 79 KRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQ 138
Query: 195 P---KDIGIL-IVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGM---GCSAGLISIDL 247
GI ++ CS TP L KL G S G+ GC AG + +
Sbjct: 139 EWGQSKSGITHLIFCS--TTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRM 196
Query: 248 AKDLLQVHPNSYALVISMENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRW 304
AKDL + + + LVI E + + +E + LV LF G +A+++ ++
Sbjct: 197 AKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVE 256
Query: 305 RSKYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIG-----VSLSKDLMAVAGDALKTNIT 359
++ + +V T +T V E G IG V L+ L D + NI
Sbjct: 257 KACFEIVWTAQT----------VVPNSE---GAIGGKVREVGLTFQLKGAVPDLISANIE 303
Query: 360 TLGPLVLPMSEQLLFFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNL 419
M E F K+F + +H GGRA+LD +E L
Sbjct: 304 NC------MVEAFSQFKISDWNKLF-----------------WVVHPGGRAILDRVEAKL 340
Query: 420 QLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQ--------IAFGSG 471
L + P+R + +GN SS+ + + L + K ++ G T FG G
Sbjct: 341 NLDPTKLIPTRHVMSEYGNMSSACVHFILDQTR-KASLQNGCSTTGEGLEMGVLFGFGPG 399
Query: 472 FKCNSAVWKAL 482
+ V K++
Sbjct: 400 LTIETVVLKSV 410
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 104/250 (41%), Gaps = 53/250 (21%)
Query: 237 GCSAGLISIDLAKDLLQVHPNSYALVISMENITLNWYFGNERSM--LVSNCLFRMGGAAI 294
GC AG + AKDL + + + LV+ E + + +E ++ LV LF G AA+
Sbjct: 750 GCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAV 809
Query: 295 LL-SNKRSDRWRSKYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDA 353
++ S+ R ++LV +T + A+AG+
Sbjct: 810 IVGSDPDISIERPLFQLVSAAQTF------------------------IPNSAGAIAGNL 845
Query: 354 LKTNIT-TLGPLVLPMSEQLLFFATLVARKVFKLKIKPYIP----DFKLAFEHFCIHAGG 408
+ +T L P V TL++ V K + + P D+ F + H GG
Sbjct: 846 REVGLTFHLWPNV----------PTLISENVEKCLTQAFDPLGISDWNSLF--WIAHPGG 893
Query: 409 RAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRT----- 463
A+LD +E L L + +E +R L +GN SS+ + + L E + + +G+R
Sbjct: 894 PAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFIL--DEMRKKSLKGERATTGEG 951
Query: 464 --WQIAFGSG 471
W + FG G
Sbjct: 952 LDWGVLFGFG 961
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 147/371 (39%), Gaps = 69/371 (18%)
Query: 142 RKILERSGLGES-TYLPEAVLRVPPNPCM------AEARKEAECVMFGALDELFAKTSLK 194
++I ERS + + YL E +L+ P+ C +AR+ + L + A+ +++
Sbjct: 63 KRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQ 122
Query: 195 P---KDIGIL-IVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGM---GCSAGLISIDL 247
GI ++ CS TP L KL G S G+ GC AG + +
Sbjct: 123 EWGQSKSGITHLIFCS--TTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRM 180
Query: 248 AKDLLQVHPNSYALVISMENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRW 304
AKDL + + + LVI E + + +E + LV LF G +A+++ ++
Sbjct: 181 AKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVE 240
Query: 305 RSKYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIG-----VSLSKDLMAVAGDALKTNIT 359
++ + +V T +T V E G IG V L+ L D + NI
Sbjct: 241 KACFEIVWTAQT----------VVPNSE---GAIGGKVREVGLTFQLKGAVPDLISANIE 287
Query: 360 TLGPLVLPMSEQLLFFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNL 419
M E F K+F + +H GGRA+LD +E L
Sbjct: 288 NC------MVEAFSQFKISDWNKLF-----------------WVVHPGGRAILDRVEAKL 324
Query: 420 QLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQ--------IAFGSG 471
L + P+R + +GN SS+ + + L + K ++ G T FG G
Sbjct: 325 NLDPTKLIPTRHVMSEYGNMSSACVHFILDQTR-KASLQNGCSTTGEGLEMGVLFGFGPG 383
Query: 472 FKCNSAVWKAL 482
+ V K++
Sbjct: 384 LTIETVVLKSV 394
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 121/291 (41%), Gaps = 30/291 (10%)
Query: 194 KPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQ 253
+ +IG+L++ S P + ++ L +I + MGC+A + ++ A + ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 254 VHPNSYALVISMENITLNWYFGNERSMLVSNCLFRMGGAAILLSNKRSDRWRSKYRLVHT 313
HP ALV+ +E ++N F ++ + +V + LF G AA+++ + ++V
Sbjct: 191 AHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV-- 248
Query: 314 VRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLL 373
VR S +Q D T G+ L + + + + + V P+ ++L
Sbjct: 249 VR----------SSFSQLLDNT-EDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEML 297
Query: 374 FFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTL 433
+ L I D L + IH GG ++++ ++L +S S L
Sbjct: 298 WDNGL------------QISDIDL----WAIHPGGPKIIEQSVRSLGISAELAAQSWDVL 341
Query: 434 YRFGNTSSSSLWYELAYSEAKGRIKRGDRTW-QIAFGSGFKCNSAVWKALR 483
RFGN S SL + L + + T AFG G ++ +R
Sbjct: 342 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 121/291 (41%), Gaps = 30/291 (10%)
Query: 194 KPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQ 253
+ +IG+L++ S P + ++ L +I + MGC+A + ++ A + ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 254 VHPNSYALVISMENITLNWYFGNERSMLVSNCLFRMGGAAILLSNKRSDRWRSKYRLVHT 313
HP ALV+ +E ++N F ++ + +V + LF G AA+++ + ++V
Sbjct: 191 AHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV-- 248
Query: 314 VRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLL 373
VR S +Q D T G+ L + + + + + V P+ ++L
Sbjct: 249 VR----------SSFSQLLDNT-EDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEML 297
Query: 374 FFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTL 433
+ L I D L + IH GG ++++ ++L +S S L
Sbjct: 298 WDNGL------------QISDIDL----WAIHPGGPKIIEQSVRSLGISAELAAQSWDVL 341
Query: 434 YRFGNTSSSSLWYELAYSEAKGRIKRGDRTW-QIAFGSGFKCNSAVWKALR 483
RFGN S SL + L + + T AFG G ++ +R
Sbjct: 342 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 137/340 (40%), Gaps = 59/340 (17%)
Query: 155 YLPEAVLRVPPNPC--MA---EARKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
YL E +L+ PN C MA +AR++ V L + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
+ P + LR + Y + G AG + LAKDL + + + LV+
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV LF G AA+++ S+ + + + +V T +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA--- 247
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
D G I V L + AG L +V++
Sbjct: 248 ----------PDSEGAIDVHLRE-----AGLTFHL---------------LKDVPGIVSK 277
Query: 382 KVFKLKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFG 437
+ K ++ + P D+ F + H GG A+LD++E+ L L M +R L +G
Sbjct: 278 NITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYG 335
Query: 438 NTSSSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
N SS+ + + L K + G +T W + FG G
Sbjct: 336 NMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 139/346 (40%), Gaps = 71/346 (20%)
Query: 155 YLPEAVLRVPPNPC--MA---EARKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
YL E +L+ PN C MA +AR++ V L + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
+ P + LR + Y + G AG + LAKDL + + + LV+
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV LF G AA+++ S+ + + + +V T +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQT----- 245
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATL--- 378
+A D + G + L + E L F L
Sbjct: 246 ---------------------------IAPD-------SEGAIDLHLREAGLTFHLLKDV 271
Query: 379 ---VARKVFKLKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRM 431
V++ + K ++ + P D+ F + H GG A+LD++E+ L L M +R
Sbjct: 272 PGIVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATRE 329
Query: 432 TLYRFGNTSSSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
L +GN SS+ + + L K + G +T W + FG G
Sbjct: 330 VLSEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 135/337 (40%), Gaps = 53/337 (15%)
Query: 155 YLPEAVLRVPPNPC--MA---EARKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
YL E +L+ PN C MA +AR++ V L + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
+ P + LR + Y + G AG + LAKDL + + + LV+
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV LF G AA+++ S+ + + + +V T +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ ++ T L KD+ + + NIT
Sbjct: 251 EGAIDAHLREAGLT----FHLLKDVPGI----VSKNIT---------------------- 280
Query: 382 KVFKLKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTS 440
K +P I D+ F + H GG A+LD++E+ L L M +R L +GN S
Sbjct: 281 KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMS 338
Query: 441 SSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
S+ + + L K + G +T W + FG G
Sbjct: 339 SACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 135/337 (40%), Gaps = 53/337 (15%)
Query: 155 YLPEAVLRVPPNPC--MA---EARKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
YL E +L+ PN C MA +AR++ V L + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
+ P + LR + Y + G AG + LAKDL + + + LV+
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV LF G AA+++ S+ + + + +V T +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ ++ T L KD+ + + NIT
Sbjct: 251 EGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT---------------------- 280
Query: 382 KVFKLKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTS 440
K +P I D+ F + H GG A+LD++E+ L L M +R L +GN S
Sbjct: 281 KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMS 338
Query: 441 SSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
S+ + + L K + G +T W + FG G
Sbjct: 339 SACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 374
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 135/337 (40%), Gaps = 53/337 (15%)
Query: 155 YLPEAVLRVPPNPC--MA---EARKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
YL E +L+ PN C MA +AR++ V L + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
+ P + LR + Y + G AG + LAKDL + + + LV+
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV LF G AA+++ S+ + + + +V T +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ ++ T L KD+ + + NIT
Sbjct: 251 EGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT---------------------- 280
Query: 382 KVFKLKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTS 440
K +P I D+ F + H GG A+LD++E+ L L M +R L +GN S
Sbjct: 281 KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMS 338
Query: 441 SSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
S+ + + L K + G +T W + FG G
Sbjct: 339 SACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 374
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 135/337 (40%), Gaps = 53/337 (15%)
Query: 155 YLPEAVLRVPPNPC--MA---EARKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
YL E +L+ PN C MA +AR++ V L + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
+ P + LR + Y + G AG + LAKDL + + + LV+
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV LF G AA+++ S+ + + + +V T +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ ++ T L KD+ + + NIT
Sbjct: 251 EGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT---------------------- 280
Query: 382 KVFKLKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTS 440
K +P I D+ F + H GG A+LD++E+ L L M +R L +GN S
Sbjct: 281 KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMS 338
Query: 441 SSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
S+ + + L K + G +T W + FG G
Sbjct: 339 SACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 374
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 135/337 (40%), Gaps = 53/337 (15%)
Query: 155 YLPEAVLRVPPNPC--MA---EARKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
YL E +L+ PN C MA +AR++ V L + A ++K PK I LIV
Sbjct: 70 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 129
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
+ P + LR + Y + G AG + LAKDL + + + LV+
Sbjct: 130 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 189
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 249
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ ++ T L KD+ + + NIT
Sbjct: 250 EGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT---------------------- 279
Query: 382 KVFKLKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTS 440
K +P I D+ F + H GG A+LD++E+ L L M +R L +GN S
Sbjct: 280 KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMS 337
Query: 441 SSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
S+ + + L K + G +T W + FG G
Sbjct: 338 SACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 373
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 135/337 (40%), Gaps = 53/337 (15%)
Query: 155 YLPEAVLRVPPNPC--MA---EARKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
YL E +L+ PN C MA +AR++ V L + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
+ P + LR + Y + G AG + LAKDL + + + LV+
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV LF G AA+++ S+ + + + +V T +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ ++ T L KD+ + + NIT
Sbjct: 251 EGAIDFHLREAGLT----FHLLKDVPGI----VSKNIT---------------------- 280
Query: 382 KVFKLKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTS 440
K +P I D+ F + H GG A+LD++E+ L L M +R L +GN S
Sbjct: 281 KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMS 338
Query: 441 SSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
S+ + + L K + G +T W + FG G
Sbjct: 339 SACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 52/326 (15%)
Query: 140 FQRKILERSGLGESTY-LPEAVLRVPPNPCM-----AEARKEAECVMFGALDELFAKTSL 193
FQR I ++SG+ + + L + +LR P+ C + R++ + L + A +++
Sbjct: 69 FQR-ICDKSGIKKRHFHLTDEILRKNPSICKFKEASLDPRQDIAVLEVPKLAKEAAISAI 127
Query: 194 K----PKD-IGILIVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLA 248
K PK I L+ + P + LR + L G AG + +A
Sbjct: 128 KQWGQPKSKITHLVFATTSGVDMPGADFQLAKLLGLRPTVKRVMLYQQGXYAGATVLRVA 187
Query: 249 KDLLQVHPNSYALVISMENITLNWYFGNERSM--LVSNCLFRMGGAAILLSNKRSDRWRS 306
KDL + + + LV E + + +E + LV + LF G AA+++
Sbjct: 188 KDLAENNKGARVLVACSEVTAVTFRAPSETHLDGLVGSALFGDGAAALIV---------- 237
Query: 307 KYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVL 366
G+D V Q+E P I + + ++ + A+ ++ G L+
Sbjct: 238 ------------GSDP-----VPQEEKPLFEIHWA-GEAVLPDSDGAINGHLREAG-LIF 278
Query: 367 PMSEQLLFFATLVARKVFKLKIKP----YIPDFKLAFEHFCIHAGGRAVLDELEKNLQLS 422
+ + + L+++ + K+ +P + P + F + +H GG A+LD++E L LS
Sbjct: 279 HLLKDV---PGLISKNIDKVLAEPLEYVHFPSYNDMF--WAVHPGGPAILDQIEAKLGLS 333
Query: 423 DRHMEPSRMTLYRFGNTSSSSLWYEL 448
M+ SR L +GN SS+S+ + L
Sbjct: 334 TDKMQASRDVLASYGNMSSASVLFVL 359
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/299 (20%), Positives = 117/299 (39%), Gaps = 38/299 (12%)
Query: 197 DIGILIVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHP 256
DI L+V + P + ++ LR ++ L GC AG ++ LAKDL +
Sbjct: 147 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 206
Query: 257 NSYALVISMENITLNWYFGNE----RSMLVSNCLFRMGGAAILLSNKRSDRWRSKYRLVH 312
+ LV++ E +TL ++ G + R++LV LF G AA+++ D R + +V
Sbjct: 207 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQG-LFGDGAAAVIVGADADDVERPLFEIVS 264
Query: 313 TVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQL 372
+T D + + R+ L + + + GD ++ + + L
Sbjct: 265 AAQTIIPESDHALNMRFTER----RLDGVLGRQVPGLIGDNVERCLLDM------FGPLL 314
Query: 373 LFFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMT 432
+F + +H G ++D+++ L L + SR
Sbjct: 315 GGDGGGGWNDLF-----------------WAVHPGSSTIMDQVDAALGLEPGKLAASRRV 357
Query: 433 LYRFGNTSSSSLWYELAYSEAKGRIKRGDRTW-----QIAFGSGFKCNSAVWKALRTIN 486
L +GN S +++ + L + + W +AFG G ++ + A +N
Sbjct: 358 LSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHATSHVN 416
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 134/337 (39%), Gaps = 53/337 (15%)
Query: 155 YLPEAVLRVPPNPC--MA---EARKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
YL E +L+ PN C MA +AR++ V L + A ++K PK I LIV
Sbjct: 70 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 129
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
+ P + LR + Y + G AG + LAKDL + + + LV+
Sbjct: 130 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 189
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 249
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ ++ T L KD+ + + NIT
Sbjct: 250 EGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT---------------------- 279
Query: 382 KVFKLKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTS 440
K +P I D+ F + GG A+LD++E+ L L M +R L +GN S
Sbjct: 280 KALVEAFEPLGISDYNSIF--WIAQPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMS 337
Query: 441 SSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
S+ + + L K + G +T W + FG G
Sbjct: 338 SACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 373
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 134/337 (39%), Gaps = 53/337 (15%)
Query: 155 YLPEAVLRVPPNPC--MA---EARKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
YL E +L+ PN C MA +AR++ V L + A ++K PK I LIV
Sbjct: 69 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 128
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
+ P + LR + Y + G AG + LAKDL + + + LV+
Sbjct: 129 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 188
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV LF G AA+++ S+ + + + +V T +T
Sbjct: 189 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 248
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ ++ T L KD+ + + NIT
Sbjct: 249 EGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT---------------------- 278
Query: 382 KVFKLKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTS 440
K +P I D+ F + H GG A+LD++E+ L L M +R L +G S
Sbjct: 279 KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGAMS 336
Query: 441 SSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
S+ + + L K + G +T W + FG G
Sbjct: 337 SACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 372
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 134/337 (39%), Gaps = 53/337 (15%)
Query: 155 YLPEAVLRVPPNPC--MA---EARKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
YL E +L+ PN C MA +AR++ V L + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
+ P + LR + Y + G AG + LAKDL + + + LV+
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E + + ++ + LV L G AA+++ S+ + + + +V T +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALSGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ ++ T L KD+ + + NIT
Sbjct: 251 EGAIDGHLREAGLT----FHLLKDVPGI----VSKNIT---------------------- 280
Query: 382 KVFKLKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTS 440
K +P I D+ F + H GG A+LD++E+ L L M +R L +GN S
Sbjct: 281 KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMS 338
Query: 441 SSSLWYELAYSEAKGRIKRGDRT------WQIAFGSG 471
S+ + + L K + G +T W + FG G
Sbjct: 339 SACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 374
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/294 (20%), Positives = 115/294 (39%), Gaps = 38/294 (12%)
Query: 197 DIGILIVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHP 256
DI L+V + P + ++ LR ++ L GC AG ++ LAKDL +
Sbjct: 117 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 176
Query: 257 NSYALVISMENITLNWYFGNE----RSMLVSNCLFRMGGAAILLSNKRSDRWRSKYRLVH 312
+ LV++ E +TL ++ G + R++LV LF G AA+++ D R + +V
Sbjct: 177 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQG-LFGDGAAAVIVGADADDVERPLFEIVS 234
Query: 313 TVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQL 372
+T D + + R+ L + + + GD ++ + + L
Sbjct: 235 AAQTIIPESDHALNMRFTER----RLDGVLGRQVPGLIGDNVERCLLDM------FGPLL 284
Query: 373 LFFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMT 432
+F + +H G ++D+++ L L + SR
Sbjct: 285 GGDGGGGWNDLF-----------------WAVHPGSSTIMDQVDAALGLEPGKLAASRRV 327
Query: 433 LYRFGNTSSSSLWYELAYSEAKGRIKRGDRTW-----QIAFGSGFKCNSAVWKA 481
L +GN S +++ + L + + W +AFG G ++ + A
Sbjct: 328 LSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHA 381
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 115/264 (43%), Gaps = 34/264 (12%)
Query: 212 PSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVISMENITLN 271
P ++ +I+ L ++ +L MGC AGL S+ A L + P + LV+ E +L+
Sbjct: 131 PDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLH 190
Query: 272 WYFGNERSMLVSNCLFRMGGAAILLS-NKRSDRWRSKYRLVHTVRTHKGADDKCFSCVTQ 330
+ + +V++ +F G AA ++ N R + + R+ ++ + V
Sbjct: 191 FSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTEN---AMVWD 247
Query: 331 QEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVARKVFKLKIKP 390
E +G+ S + V G ++ + TL + + L +T ++ K +
Sbjct: 248 LEKEGWNLGLDAS--IPIVIGSGIEAFVDTL------LDKAKLQTSTAISAKDCE----- 294
Query: 391 YIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAY 450
F IH GG+++L +E +L + + + + + +GN SS+S+ + + +
Sbjct: 295 -----------FLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDH 343
Query: 451 SEAKGRIKRGDRTWQI--AFGSGF 472
+ R + T+ I AFG G
Sbjct: 344 A----RKSKSLPTYSISLAFGPGL 363
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 405 HAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAY----SEAKGRIKRG 460
H GGRA+LD++E L+L +R L+ +GN S+S+ Y L S AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 461 DR-TWQIAFGSG 471
+ W + G G
Sbjct: 379 EGLEWGVLLGFG 390
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 405 HAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAY----SEAKGRIKRG 460
H GGRA+LD++E L+L +R L+ +GN S+S+ Y L S AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 461 DR-TWQIAFGSG 471
+ W + G G
Sbjct: 379 EGLEWGVLLGFG 390
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 72/356 (20%), Positives = 141/356 (39%), Gaps = 59/356 (16%)
Query: 155 YLPEAVLRVPPNPCMAEA-----RKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
++ E +L+ PN EA R + + L + A ++K PK I LIV
Sbjct: 67 HVTEEILKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITHLIVC 126
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
C P + L ++ + +GC AG + LAKD+ + + + L++
Sbjct: 127 CLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVC 186
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E T + +E + ++ LF G AA+++ ++ R + LV T +T
Sbjct: 187 SEMTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTVERPIFELVSTAQT----- 241
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ + A+ G L++ ++ +P TL++
Sbjct: 242 -------------------IVPESHGAIEGHLLESGLSFHLYKTVP---------TLISN 273
Query: 382 KVFKLKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFG 437
+ + P D+ F + H GG A+LD++ + L ++ +R L +G
Sbjct: 274 NIKTCLSDAFTPLNISDWNSLF--WIAHPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYG 331
Query: 438 NTSSSSLWYELAYSEAK----GRIKRGDR-TWQI--AFGSGFKCNSAVWKALRTIN 486
N SS+++++ + K G+ G+ W + FG G + V +++ I+
Sbjct: 332 NMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVETVVLRSVPVIS 387
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 402 FCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLWY------ELAYSEAKG 455
+ +H GG A+LD++E L+L + SR L +GN SS+S+ + E + K
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKS 377
Query: 456 RIKRGDR-TWQIAFGSGFKCNSAVWKAL 482
G + I FG G + + +AL
Sbjct: 378 TFGEGSEWGFLIGFGPGLTVETLLLRAL 405
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 99/254 (38%), Gaps = 39/254 (15%)
Query: 238 CSAGLISIDLAKDLLQVHPNSYALVISMENITLNWYFGNERSM--LVSNCLFRMGGAAIL 295
C G + +AKDL + + + LV++ E L++ NE L F G A++
Sbjct: 164 CHMGAAMLRIAKDLAENNRGARVLVVACEITVLSFRGPNEGDFEALAGQAGFGDGAGAVV 223
Query: 296 LSNKRSDRWRSKYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALK 355
+ GAD + E P I ++ + + G A+
Sbjct: 224 V----------------------GADP-----LEGIEKPIYEIAAAMQETVAESQG-AVG 255
Query: 356 TNITTLGPLVLPMSEQLLFFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGGRAVLDEL 415
++ G +++ A + R + + + ++ F + H G A++D +
Sbjct: 256 GHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLGVREWNDVF--WVAHPGNWAIIDAI 313
Query: 416 EKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYEL----AYSEAKGRIKRGDR-TWQI--AF 468
E LQLS + +R +GN S+++++ + S +GR GD W + F
Sbjct: 314 EAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQWGVLLGF 373
Query: 469 GSGFKCNSAVWKAL 482
G G + V +++
Sbjct: 374 GPGLSIETVVLRSM 387
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 351 GDALKTNITTLGPLVLPMSEQLLFFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGGRA 410
G ++K + G V + +++ ATL A + K + P D +L F H
Sbjct: 200 GTSMKNRLYMNGREVFKFAVRVMNTATLEA--IEKAGLTP--EDIRL----FVPHQANLR 251
Query: 411 VLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGS 470
++D + L L E + + R+GNTS++S+ L + GRI+ GD ++FG+
Sbjct: 252 IIDAARERLGLP---WERVAVNVDRYGNTSTASIPLALKEAVDAGRIREGDHVLLVSFGA 308
Query: 471 GFKCNSAV 478
G +AV
Sbjct: 309 GLTWAAAV 316
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 377 TLVARKVFKLKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDRHM 426
T+ +VFK+ + +I D LA + H ++ K L +S M
Sbjct: 229 TMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMS---M 285
Query: 427 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNSAVWK 480
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 286 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 339
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 58/296 (19%)
Query: 183 ALDELFAKTSLKPKDIGILIVNCSLFNPT---PSLSAMVINHYKLRGNIVSYNLGGMGCS 239
A E + +L P+++ ++I+ + P PS + +V K +G + ++++ CS
Sbjct: 57 AAKEALREANLSPEELDLIIL--ATLTPQKRFPSTACLVQAQLKAKG-VYAFDISA-ACS 112
Query: 240 AGLISIDLAKDLLQVHPNSYALVISMENIT--LNWYFGNERSMLVSNCLFRMGGAAILLS 297
+ ++D+A ++ LVI E ++ ++W +RS V LF G A++++
Sbjct: 113 GFIYALDIADSFIKSGKAKNVLVIGAEKLSEAVDW---EDRSTCV---LFGDGAGAVVVT 166
Query: 298 NKRSDRWRSKYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTN 357
R K ++ T +G+ ++ D G I + ++L VA
Sbjct: 167 -----RSEDKSDILATRMYAEGSLEELLHA-----DNCGYIRMK-GRELFKVA------- 208
Query: 358 ITTLGPLVLPMSEQLLFFATLVARKVF-KLKIKPYIPDFKLAFEHFCIHAGGRAVLDELE 416
V M E V R+V K +KP + L H A R +++ L
Sbjct: 209 -------VRSMEE--------VCREVLEKAGVKP--EEVSLVIPH---QANVR-IINALA 247
Query: 417 KNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGF 472
+ L + E + + ++GNTS++S+ L + +G++KRGD A G G
Sbjct: 248 EKLNIPK---EKVFVNIQKYGNTSAASIPIALHEAIKEGKVKRGDLILMTAMGGGL 300
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 377 TLVARKVFKLKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDRHM 426
T+ +VFK+ + +I D LA + H ++ K L +S M
Sbjct: 206 TMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMS---M 262
Query: 427 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNSAVWK 480
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 263 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 377 TLVARKVFKLKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDRHM 426
T+ +VFK+ + +I D LA + H ++ K L +S M
Sbjct: 206 TMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMS---M 262
Query: 427 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNSAVWK 480
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 263 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 127/305 (41%), Gaps = 49/305 (16%)
Query: 189 AKTSLKPKDIGI----LIVNCSLFNP--TPSLSAMVINHYKLRGNIVSYNLGGMGCSAGL 242
A+ +L IGI L+VN S+ PS +++V + + + V++++ C A +
Sbjct: 69 ARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVAN-ACLAFI 127
Query: 243 ISIDLAKDLLQVHPNSYALVISMENITLNWYFGNER--SMLVSNCLFRMGGAAILLSNKR 300
+D+A +L+ YALV+ E L + ER S V+ FR AA+ L
Sbjct: 128 NGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGA 187
Query: 301 SDRWRSKYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITT 360
+ ++ LV +KG GV+ S A + N
Sbjct: 188 AAMVMARTELVPDAPRYKG-------------------GVTRS---------ATEWNKLC 219
Query: 361 LGPL--VLPMSEQLLFFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKN 418
G L ++ + LL +A+K F L + + + F IH R K+
Sbjct: 220 RGNLDRMVTDTRLLLIEGIKLAQKTF-LAARQVLGWAVDELDQFVIHQVSRPHTAAFVKS 278
Query: 419 LQLSDRHMEPSR-MTLY-RFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNS 476
+ +P++ MT++ GN +S+ L+ + GR+K+GDR + GSG C+
Sbjct: 279 FGI-----DPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSM 333
Query: 477 A--VW 479
A VW
Sbjct: 334 AEVVW 338
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 101/254 (39%), Gaps = 39/254 (15%)
Query: 238 CSAGLISIDLAKDLLQVHPNSYALVISMENITLNWYFGNERSM--LVSNCLFRMGGAAIL 295
C G + +AKDL + + + LV++ E L++ NE L F G A++
Sbjct: 164 CHMGAAMLRIAKDLAENNRGARVLVVACEITVLSFRGPNEGDFEALAFQAGFGDGAGAVV 223
Query: 296 LSNKRSDRWRSKYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALK 355
+ GAD + E P I ++ ++ +A + A+
Sbjct: 224 V----------------------GADP-----LEGIEKPIYEIAAAM-QETVAESQGAVG 255
Query: 356 TNITTLGPLVLPMSEQLLFFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGGRAVLDEL 415
++ G +++ A + R + + + ++ F + H G A++D +
Sbjct: 256 GHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLGVREWNDVF--WVAHPGNWAIIDAI 313
Query: 416 EKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYEL----AYSEAKGRIKRGDR-TWQI--AF 468
E LQLS + +R +GN S+++++ + S +GR GD W + F
Sbjct: 314 EAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQWGVLLGF 373
Query: 469 GSGFKCNSAVWKAL 482
G G + V +++
Sbjct: 374 GPGLSIETVVLRSM 387
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 128/305 (41%), Gaps = 49/305 (16%)
Query: 189 AKTSLKPKDIGI----LIVNCSLFNP--TPSLSAMVINHYKLRGNIVSYNLGGMGCSAGL 242
A+ +L +IGI L++N S+ PS +++V + + + +++++ C A +
Sbjct: 76 ARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFI 134
Query: 243 ISIDLAKDLLQVHPNSYALVISMENITLNWYFGNER--SMLVSNCLFRMGGAAILLSNKR 300
+D+A +L+ YALV+ E L + ER S V+ FR AA+ L
Sbjct: 135 NGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGA 194
Query: 301 SDRWRSKYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITT 360
+ ++ LV +KG GV+ S A + N
Sbjct: 195 AAMVMARSELVPDAPRYKG-------------------GVTRS---------ATEWNKLC 226
Query: 361 LGPL--VLPMSEQLLFFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKN 418
G L ++ + LL +A+K F + K + + F IH R K+
Sbjct: 227 RGNLDRMVTDTRLLLIEGIKLAQKTF-VAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKS 285
Query: 419 LQLSDRHMEPSR-MTLY-RFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNS 476
+ +P++ MT++ GN +S+ L+ + GR+K+GDR + GSG C+
Sbjct: 286 FGI-----DPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSM 340
Query: 477 A--VW 479
A VW
Sbjct: 341 AEVVW 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 128/305 (41%), Gaps = 49/305 (16%)
Query: 189 AKTSLKPKDIGI----LIVNCSLFNP--TPSLSAMVINHYKLRGNIVSYNLGGMGCSAGL 242
A+ +L +IGI L++N S+ PS +++V + + + +++++ C A +
Sbjct: 75 ARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFI 133
Query: 243 ISIDLAKDLLQVHPNSYALVISMENITLNWYFGNER--SMLVSNCLFRMGGAAILLSNKR 300
+D+A +L+ YALV+ E L + ER S V+ FR AA+ L
Sbjct: 134 NGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGA 193
Query: 301 SDRWRSKYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITT 360
+ ++ LV +KG GV+ S A + N
Sbjct: 194 AAMVMARSELVPDAPRYKG-------------------GVTRS---------ATEWNKLC 225
Query: 361 LGPL--VLPMSEQLLFFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKN 418
G L ++ + LL +A+K F + K + + F IH R K+
Sbjct: 226 RGNLDRMVTDTRLLLIEGIKLAQKTF-VAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKS 284
Query: 419 LQLSDRHMEPSR-MTLY-RFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNS 476
+ +P++ MT++ GN +S+ L+ + GR+K+GDR + GSG C+
Sbjct: 285 FGI-----DPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSM 339
Query: 477 A--VW 479
A VW
Sbjct: 340 AEVVW 344
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 70/356 (19%), Positives = 140/356 (39%), Gaps = 59/356 (16%)
Query: 155 YLPEAVLRVPPNPCMAEA-----RKEAECVMFGALDELFAKTSLK----PKD-IGILIVN 204
++ E +L+ PN EA R + + L + A ++K PK I LIV
Sbjct: 67 HVTEEILKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITHLIVC 126
Query: 205 CSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVIS 264
C P + L ++ + +GC AG + LAKD+ + + + L++
Sbjct: 127 CLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVC 186
Query: 265 MENITLNWYFGNERSM--LVSNCLFRMGGAAILL-SNKRSDRWRSKYRLVHTVRTHKGAD 321
E T + +E + ++ + G AA+++ ++ R + LV T +T
Sbjct: 187 SEMTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTVERPIFELVSTAQT----- 241
Query: 322 DKCFSCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVAR 381
+ + A+ G L++ ++ +P TL++
Sbjct: 242 -------------------IVPESHGAIEGHLLESGLSFHLYKTVP---------TLISN 273
Query: 382 KVFKLKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFG 437
+ + P D+ F + H GG A+LD++ + L ++ +R L +G
Sbjct: 274 NIKTCLSDAFTPLNISDWNSLF--WIAHPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYG 331
Query: 438 NTSSSSLWYELAYSEAK----GRIKRGDR-TWQI--AFGSGFKCNSAVWKALRTIN 486
N SS+++++ + K G+ G+ W + FG G + V +++ I+
Sbjct: 332 NMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVETVVLRSVPVIS 387
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 120/317 (37%), Gaps = 46/317 (14%)
Query: 169 MAEARKEAECVMFGALDELFAKTSLKPKDIGILIVNCSLFNPTPSLSAMVINH---YKLR 225
+A R+ A + + A +LFA+ ++ + +I+ + SA ++ H
Sbjct: 73 IAAPRETAADLAYEAARKLFAQGAVGADQVDFVILCTQAPDYVLPTSACMLQHRLGIPTH 132
Query: 226 GNIVSYNLG------GMGCSAGLISIDLAKDLLQVHPNSYALVISMENITLNWYFGNERS 279
+ NLG G+ + GL+ A+ +L + ++Y+ + + ++ FG+ S
Sbjct: 133 AGALDVNLGCSGYVYGLSLAKGLVETGAARCVLLLTADTYSKYLHPLDKSVRTLFGDGAS 192
Query: 280 MLV----SNCLFRMGGAAILLSNKRSDRWRSKYRLVHTVRTHKGADDKCFSCVTQQEDPT 335
L R+G + + K L R K AD + ED +
Sbjct: 193 ATAVIAEHGELERIGPFVFGTDGRGAPNLIVKAGLF---REPKSADS-----AREHEDAS 244
Query: 336 GRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVARKVFKLKIKPYIPDF 395
G N+ T L + +E + F V R +L P
Sbjct: 245 G--------------------NVRTDEHLYMNGAEVMAFSLAEVPRAADRLLALAGEP-- 282
Query: 396 KLAFEHFCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSEAKG 455
+ + F +H R +LD L K +++ + H P M GNT SS+L L A G
Sbjct: 283 RENIDCFVLHQANRFMLDALRKKMKIPE-HKFPVLME--HCGNTVSSTLPLALETMRANG 339
Query: 456 RIKRGDRTWQIAFGSGF 472
+ RG R + FG G+
Sbjct: 340 TLARGMRLMLLGFGVGY 356
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 431 MTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNSAVWK 480
+TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 267 VTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 431 MTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNSAVWK 480
+TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 267 VTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1MZJ|A Chain A, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
pdb|1MZJ|B Chain B, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
Length = 339
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 380 ARKVFKLKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQ----LSDRHMEPSRMTLYR 435
++VF+ + +P + A E + G + NL+ L DR P + + R
Sbjct: 222 GKRVFRWAVADVVPAAREALEVAGLTVGDLVAFVPHQANLRIIDVLVDRLGVPEHVVVSR 281
Query: 436 ----FGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFK 473
GNTSS+S+ L G + G I FG+G
Sbjct: 282 DAEDTGNTSSASVALALDRLVRSGAVPGGGPALMIGFGAGLS 323
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 431 MTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCNSAVWK 480
+T+ GNTS++S+ L + GRIKRG G GF ++V +
Sbjct: 283 VTVGEHGNTSAASIPLALDVAVRDGRIKRGQNVLIEGVGGGFTWGASVIR 332
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 113/298 (37%), Gaps = 58/298 (19%)
Query: 188 FAKTSLKPKDI-GILIVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISID 246
+ L DI G+++ + F TP + MV +G I+ ++L GC+ ++
Sbjct: 94 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALG 151
Query: 247 LAKDLLQVHPNSYALVISMENI--TLNWYFGNERSMLVSNC-LFRMGGAAILLSNKRSDR 303
A D+++ + LV+ E + T++ Y NC +F G AA+++
Sbjct: 152 AAADMIRGGGAATMLVVGTEKLSPTIDMYD-------AGNCFIFADGAAAVVVG------ 198
Query: 304 WRSKYRLVHTVRTHKGADDKCFSCVTQQ-------EDPTGRIGVSLSKDLMAVAGDALKT 356
+ ++ + T G+D + + Q ++P+G +
Sbjct: 199 -ETPFQGIGP--TVAGSDGEQADAIRQDIDWITFAQNPSGP-----------------RP 238
Query: 357 NITTLGPLVLPMSEQLLFFATLVARKVFKLK-IKPYIPDFKLAFEHFCIHAGGRAVLDEL 415
+ GP V + F V R+ ++P D F H + + L
Sbjct: 239 FVRLEGPAVFRWAA---FKMGDVGRRAMDAAGVRPDQIDV------FVPHQANSRINELL 289
Query: 416 EKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFK 473
KNLQL R + GNTS++S+ +A G K GD I +G+G
Sbjct: 290 VKNLQL--RPDAVVANDIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLS 345
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 116/305 (38%), Gaps = 58/305 (19%)
Query: 188 FAKTSLKPKDI-GILIVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISID 246
+ L DI G+++ + F TP + MV +G I+ ++L GC+ ++
Sbjct: 94 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALG 151
Query: 247 LAKDLLQVHPNSYALVISMENI--TLNWYFGNERSMLVSNC-LFRMGGAAILLSNKRSDR 303
A D+++ + LV+ E + T++ Y NC +F G AA+++
Sbjct: 152 AAADMIRGGGAATMLVVGTEKLSPTIDMYD-------AGNCFIFADGAAAVVVG------ 198
Query: 304 WRSKYRLVHTVRTHKGADDKCFSCVTQQ-------EDPTGRIGVSLSKDLMAVAGDALKT 356
+ ++ + T G+D + + Q ++P+G +
Sbjct: 199 -ETPFQGIGP--TVAGSDGEQADAIRQDIDWITFAQNPSGP-----------------RP 238
Query: 357 NITTLGPLVLPMSEQLLFFATLVARKVFKLK-IKPYIPDFKLAFEHFCIHAGGRAVLDEL 415
+ GP V + F V R+ ++P D F H + + L
Sbjct: 239 FVRLEGPAVFRWAA---FKMGDVGRRAMDAAGVRPDQIDV------FVPHQANSRINELL 289
Query: 416 EKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCN 475
KNLQL R + GNTS++S+ +A G K GD I +G+G
Sbjct: 290 VKNLQL--RPDAVVANDIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYA 347
Query: 476 SAVWK 480
+ V +
Sbjct: 348 AQVVR 352
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 115/298 (38%), Gaps = 58/298 (19%)
Query: 188 FAKTSLKPKDI-GILIVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISID 246
+ L DI G+++ + F TP + MV +G I+ ++L GC+ ++
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALG 130
Query: 247 LAKDLLQVHPNSYALVISMENI--TLNWYFGNERSMLVSNC-LFRMGGAAILLSNKRSDR 303
A D+++ + LV+ E + T++ Y +R NC +F G AA+++
Sbjct: 131 AAADMIRGGGAATMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVG------ 177
Query: 304 WRSKYRLVHTVRTHKGADDKCFSCVTQQ-------EDPTGRIGVSLSKDLMAVAGDALKT 356
+ ++ + T G+D + + Q ++P+G +
Sbjct: 178 -ETPFQGIGP--TVAGSDGEQADAIRQDIDWITFAQNPSGP-----------------RP 217
Query: 357 NITTLGPLVLPMSEQLLFFATLVARKVFKLK-IKPYIPDFKLAFEHFCIHAGGRAVLDEL 415
+ GP V + F V R+ ++P D F H + + L
Sbjct: 218 FVRLEGPAVFRWAA---FKMGDVGRRAMDAAGVRPDQIDV------FVPHQANSRINELL 268
Query: 416 EKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFK 473
KNLQL R + GNTS++S+ +A G K GD I +G+G
Sbjct: 269 VKNLQL--RPDAVVANDIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLS 324
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 118/305 (38%), Gaps = 58/305 (19%)
Query: 188 FAKTSLKPKDI-GILIVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISID 246
+ L DI G+++ + F TP + MV +G I+ ++L GC+ ++
Sbjct: 93 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALG 150
Query: 247 LAKDLLQVHPNSYALVISMENI--TLNWYFGNERSMLVSNC-LFRMGGAAILLSNKRSDR 303
A D+++ + LV+ E + T++ Y +R NC +F G AA+++
Sbjct: 151 AAADMIRGGGAATMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVG------ 197
Query: 304 WRSKYRLVHTVRTHKGADDKCFSCVTQQ-------EDPTGRIGVSLSKDLMAVAGDALKT 356
+ ++ + T G+D + + Q ++P+G +
Sbjct: 198 -ETPFQGIGP--TVAGSDGEQADAIRQDIDWITFAQNPSGP-----------------RP 237
Query: 357 NITTLGPLVLPMSEQLLFFATLVARKVFKLK-IKPYIPDFKLAFEHFCIHAGGRAVLDEL 415
+ GP V + F V R+ ++P D F H + + L
Sbjct: 238 FVRLEGPAVFRWAA---FKMGDVGRRAMDAAGVRPDQIDV------FVPHQANSRINELL 288
Query: 416 EKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAFGSGFKCN 475
KNLQL R + GNTS++S+ +A G K GD I +G+G
Sbjct: 289 VKNLQL--RPDAVVANDIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYA 346
Query: 476 SAVWK 480
+ V +
Sbjct: 347 AQVVR 351
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 153 STYLPEAVLRVPPNPC--MAEARKEAECVMFGALDELFAKTSLKPKDIGILIVNCSLFNP 210
+TY P+ ++P ++E KE+ + G S+ +D G L CS+F P
Sbjct: 51 TTYFPDYAEKIPGESTQKLSEVAKESSIYLIGG--------SIPEEDAGKLYNTCSVFGP 102
Query: 211 TPSLSAMVINHYKL 224
SL ++ H K+
Sbjct: 103 DGSL---LVKHRKI 113
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 117/310 (37%), Gaps = 45/310 (14%)
Query: 172 ARKEAECVM-FGALDELFAKTSLKPKDIGILIV-NCSLFNPTPSLSAMVINHYKLRGNIV 229
A E M F A + P+DI ++IV S + PS + V + + +
Sbjct: 53 AEDETVATMGFEAAKNAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNI-DDAI 111
Query: 230 SYNLGGMGCSAGLI-SIDLAKDLLQVHPNSYALVISMENITLNWYFGNERSMLVSNCLFR 288
S++L G + ++ +A ++ ALVI ++ +RS +V LF
Sbjct: 112 SFDLAA--AXTGFVYALSVADQFIRAGKVKKALVIG-SDLNSRKLDETDRSTVV---LFG 165
Query: 289 MGGAAILLSNKRSDRWRSKYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMA 348
G A++L S+ + + H AD + Q E G+ S +
Sbjct: 166 DGAGAVILE-------ASEQEGIISTHLHASADKNNALVLAQPER-----GIEKSGYIEM 213
Query: 349 VAGDALKTNITTLGPLVLPMSEQLLFFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGG 408
+ K + L +V TL+A + K + +P H
Sbjct: 214 QGNETFKLAVRELSNVVEE---------TLLANNLDKKDLDWLVP-----------HQAN 253
Query: 409 RAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAF 468
++ K L++ M +TL ++ N S++++ L + GRI+RG AF
Sbjct: 254 LRIITATAKKLEMD---MSQVVVTLDKYANNSAATVPVALDEAIRDGRIQRGQLLLLEAF 310
Query: 469 GSGFKCNSAV 478
G G+ SA+
Sbjct: 311 GGGWTWGSAL 320
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 402 FCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLW 445
+ +H GG +L E + L+ HM S GN+SS++++
Sbjct: 293 WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIF 336
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 402 FCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLW 445
+ +H GG +L E + L+ HM S GN+SS++++
Sbjct: 293 WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIF 336
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 402 FCIHAGGRAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLW 445
+ +H GG +L E + L+ HM S GN+SS++++
Sbjct: 322 WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIF 365
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 238 CSAGLISIDLAKDLLQVHPNSYALVISMENITLNWYFGNERS-------MLVSN--CLFR 288
C A +I LAKD L PN LVI+ + G E + M++++ +
Sbjct: 111 CYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILA 170
Query: 289 MGGAAILLSNKRSDRWR---SKYRLV 311
+ A+ + D WR KY LV
Sbjct: 171 LNEDAVAYTEDVYDFWRPTGHKYPLV 196
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 326 SCVTQQEDPTGRIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVARKVF- 384
+ + ++ P G IGV + D DAL ++ L + P+ E++ A L+ R V
Sbjct: 277 NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGT 336
Query: 385 --KLKIKP 390
+LKI+P
Sbjct: 337 KEELKIEP 344
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 238 CSAGLISIDLAKDLLQVHPNSYALVISMENITLNWYFGNERS-------MLVSN--CLFR 288
C A +I LAKD L PN LVI+ + G E + M++++ +
Sbjct: 111 CYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILA 170
Query: 289 MGGAAILLSNKRSDRWR---SKYRLV 311
+ A+ + D WR KY LV
Sbjct: 171 LNEDAVAYTEDVYDFWRPTGHKYPLV 196
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 119/314 (37%), Gaps = 52/314 (16%)
Query: 170 AEARKEAECVMFGALDELFAKTSLKPKDIGILIVNCSLFN-PTPSLSAMVINHYKLRGNI 228
A+ ++ + + A + A ++P+DI ++IV + + P P+++ M+ G +
Sbjct: 45 ADDDQDTSDLAYEASVKAIADAGIQPEDIDMIIVATATGDMPFPTVANMLQERLGT-GKV 103
Query: 229 VSYNLGGMGCSAGLISIDLAKDLLQVHPNSYALVISMENITLNWYFGNERSMLVSNCLFR 288
S + CS + S+ AK +Q LV+ + ++ +RS V LF
Sbjct: 104 ASMDQLA-ACSGFMYSMITAKQYVQSGDYHNILVVGADKLSKITDL-TDRSTAV---LFG 158
Query: 289 MGGAAILLSNKRSDRWRSKYRLVHTVRTHKGADDKCFSCVTQQEDPTGRIGVSLSKDLMA 348
G A+++ R Y + D TG + L KD
Sbjct: 159 DGAGAVIIGEVSEGRGIISYEM--------------------GSDGTGGKHLYLDKDT-- 196
Query: 349 VAGDALKTNITTLGPLVLPMSEQLLFFATLVARKVFKLKIKPYIPDFKLAFEHFCIHAGG 408
LK N G V + +++ A+ R V K + D F H
Sbjct: 197 ---GKLKMN----GREVFKFAVRIMGDAS--TRVVEKANLTSDDIDL------FIPHQAN 241
Query: 409 RAVLDELEKNLQLSDRHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKRGDRTWQIAF 468
+++ + L +S M S + ++GNTS++S+ + G++K D + F
Sbjct: 242 IRIMESARERLGISKDKMSVS---VNKYGNTSAASIPLSIDQELKNGKLKDDDTIVLVGF 298
Query: 469 GSGFKCNSAVWKAL 482
G G W A+
Sbjct: 299 GGGL-----TWGAM 307
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 8/174 (4%)
Query: 137 NLDFQRKILERSGLGE-STYLPEAVLRVPPNPCMAEARKEAECVMFGALDELFAKTSLK- 194
+L R+ L R G E A L+ P + R A E A+ +L+
Sbjct: 92 DLGAAREALVRDGFTEQDANRAIAALKAVPASQTVQERTAPAWEAVQAYGERAARGALQI 151
Query: 195 ----PKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCSAGLISIDLAKD 250
D+ LI + S P L + N LRG+ + C AG S+ LA D
Sbjct: 152 AGLDVADVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQWACVAGTRSLALAAD 211
Query: 251 LLQVHPNSYALVISMENITLNWYFGNE--RSMLVSNCLFRMGGAAILLSNKRSD 302
L+ P+ LV+ E ++ + ++ S++V AA++ R +
Sbjct: 212 LVAADPDRVVLVVISEALSTTYQPADDTLESLIVRLLFADTAVAAVVTGRPRPE 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,930,055
Number of Sequences: 62578
Number of extensions: 594951
Number of successful extensions: 1425
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 98
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)