BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044264
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 13/116 (11%)
Query: 121 LFDELTCLRALDFAMFQMWSWNGFIKEIPKNI-EKLVHLRYLNLSRLKIEKLPETLCE-L 178
+FD+LT L+ L Q+ S +P + +KL +L YLNL+ +++ LP+ + + L
Sbjct: 104 VFDKLTNLKELVLVENQLQS-------LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156
Query: 179 YNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGI-ERLTSLRRV 232
NL L++ Q L+ LP+G F KL L L L+ +P G+ +RLTSL+ +
Sbjct: 157 TNLTELDLSYNQ-LQSLPEGVFDKLTQLKD-LRLYQNQLKSVPDGVFDRLTSLQYI 210
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 171 LPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGI-ERLTSL 229
LP+ EL NL L++ CQ + P F L +L +LN + L+ +P GI +RLTSL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMASNQLKSVPDGIFDRLTSL 520
Query: 230 RRV 232
+++
Sbjct: 521 QKI 523
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 13/116 (11%)
Query: 121 LFDELTCLRALDFAMFQMWSWNGFIKEIPKNI-EKLVHLRYLNLSRLKIEKLPETLCE-L 178
+FDELT ++ Q++ ++ +P + KL L YLNLS +++ LP + + L
Sbjct: 47 VFDELT-------SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99
Query: 179 YNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGI-ERLTSLRRV 232
L+ L + + Q L+ LP G F KL L L + L+ +P G+ +RLTSL+ +
Sbjct: 100 TQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYI 153
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 147 EIPKNIEKLVHLRYLNLSRLKIEKLPETLC-ELYNLQLLNVESCQDLKELPQG-FGKLIN 204
+P I YL+L ++ LP + EL +L L + L+ LP G F KL +
Sbjct: 21 SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTS 77
Query: 205 LMYLLNRGTESLRYLPAGI-ERLTSLRRV 232
L YL N T L+ LP G+ ++LT L+ +
Sbjct: 78 LTYL-NLSTNQLQSLPNGVFDKLTQLKEL 105
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 105 DDNGDDEFWLTEVLP--QLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLN 162
D DD+ W L Q+F+ + DF + +++ + E+P I+ L +LR L+
Sbjct: 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDF-LTRLYLNGNSLTELPAEIKNLSNLRVLD 276
Query: 163 LSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYL 208
LS ++ LP L + L+ + LP FG L NL +L
Sbjct: 277 LSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFL 321
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 145 IKEIPKNI-EKLVHLRYLNLSRLKIEKLPETLCE-LYNLQLLNVESCQDLKELPQG-FGK 201
+ IP N+ + +L +L L R IE++P L + L NL+ + S L+++P+G FGK
Sbjct: 135 LTHIPANLLTDMRNLSHLEL-RANIEEMPSHLFDDLENLESIEFGS-NKLRQMPRGIFGK 192
Query: 202 LINLMYLLNRGTESLRYLPAGI-ERLTSLRRV 232
+ L L N + L+ +P GI +RLTSL+++
Sbjct: 193 MPKLKQL-NLASNQLKSVPDGIFDRLTSLQKI 223
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 145 IKEIPKNI-EKLVHLRYLNLSRLKIEKLPETLCE-LYNLQLLNVESCQDLKELPQG-FGK 201
++ +P + +KL L L+LS+ +I+ LP+ + + L L +L + L+ LP G F K
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDK 98
Query: 202 LINLMYLLNRGTESLRYLPAGI-ERLTSLRRV 232
L L L T L+ +P GI +RLTSL+++
Sbjct: 99 LTQLKELA-LDTNQLKSVPDGIFDRLTSLQKI 129
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 24/143 (16%)
Query: 175 LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYL-PAGIERLTS----- 228
+C Y++ LL V + +P K I +++ G +S+ P G+ +
Sbjct: 172 VCSEYDVPLL-VNGAYAIGRMPVSL-KEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEI 229
Query: 229 -LRRVEKFVVGRGVARSSELE------NKKNLIDLLLYFGHGNEERKRKKDEEVLEALQP 281
LRR EK+ ++ E+E +I L+ F H ER ++ DEEV +A +
Sbjct: 230 VLRRSEKY-------KNKEVELLGCTARGATIITLMASFPH-VRERIKRWDEEVEKARRF 281
Query: 282 PPNLKHLGIHQYRGNNVHPHWMM 304
++ LGI Q G+N H H +M
Sbjct: 282 AAEMEKLGIKQL-GDNPHNHDLM 303
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 121 LFDELTCLRALDFAMFQMWSWNGFIKEIPKNI-EKLVHLRYLNLSRLKIEKLPETLCELY 179
+FD LT L LD Q+ +P + ++LVHL+ L + K+ +LP + L
Sbjct: 83 VFDSLTQLTVLDLGTNQL-------TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT 135
Query: 180 NLQLLNVESCQDLKELPQG-FGKLINLMY 207
+L L ++ Q LK +P G F +L +L +
Sbjct: 136 HLTHLALDQNQ-LKSIPHGAFDRLSSLTH 163
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQ-LFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVH 157
L L + D G ++ VLP +FD L L+ L ++ E+P+ IE+L H
Sbjct: 87 LTQLTVLDLGTNQL---TVLPSAVFDRLVHLKELFMCCNKL-------TELPRGIERLTH 136
Query: 158 LRYLNLSRLKIEKLPE 173
L +L L + +++ +P
Sbjct: 137 LTHLALDQNQLKSIPH 152
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 142 NGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCE-LYNLQLLNVESCQDLKELPQG-F 199
N K P + L++L+ L L ++ LP + + L L +L++ + Q L LP F
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVF 108
Query: 200 GKLINLMYLL---NRGTESLRYLPAGIERLTSLRRV 232
+L++L L N+ TE LP GIERLT L +
Sbjct: 109 DRLVHLKELFMCCNKLTE----LPRGIERLTHLTHL 140
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 123 DELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQ 182
++L L AL + ++W++N + +P L+ L++S ++ LP ELY L
Sbjct: 151 NQLASLPALPSELCKLWAYNNQLTSLPMLPSG---LQELSVSDNQLASLPTLPSELYKLW 207
Query: 183 LLNVESCQDLKELPQGFGKLI---NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR 239
N L LP G +LI N + L L+ L RLTSL + ++
Sbjct: 208 AYN-NRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSL 266
Query: 240 GVARSSELENKKNLIDL 256
V R+ ++LI L
Sbjct: 267 SVYRNQLTRLPESLIHL 283
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 21/127 (16%)
Query: 123 DELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCEL--YN 180
+ LT L AL + ++W + + +P L L + + LP LC+L YN
Sbjct: 111 NPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYN 170
Query: 181 LQLLNVE-----------SCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIE----- 224
QL ++ S L LP +L L NR T SL LP+G++
Sbjct: 171 NQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLPALPSGLKELIVS 229
Query: 225 --RLTSL 229
RLTSL
Sbjct: 230 GNRLTSL 236
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 33/121 (27%)
Query: 145 IKEIPKNIEKLVHLRY-----------------------LNLSRLKIEKLPETLCELYNL 181
+ + P +L HL++ L L+R + LP ++ L L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRL 152
Query: 182 QLLNVESCQDLKELPQGFGK---------LINLMYLLNRGTESLRYLPAGIERLTSLRRV 232
+ L++ +C +L ELP+ L+NL L T +R LPA I L +L+ +
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSL 211
Query: 233 E 233
+
Sbjct: 212 K 212
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 23/104 (22%)
Query: 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVES-----------------------C 189
+ LV+L+ L L I LP ++ L NL+ L + + C
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 190 QDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233
L+ P FG L L+ + +L LP I RLT L +++
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
>pdb|2XNJ|A Chain A, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
pdb|2XNJ|B Chain B, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
Length = 266
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 351 LGVESDHGRA--SSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSL 401
LG+E D R + S V P ++F+ + V+ D G+ +KG++ PRL++L
Sbjct: 49 LGLEIDGERVQRAYSYVNSPDNPDLEFYLVTVVYTNDAGEVVKGKLSPRLAAL 101
>pdb|4ER8|A Chain A, Structure Of The Rep Associates Tyrosine Transposase Bound
To A Rep Hairpin
Length = 165
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 57 FTVEIDGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSV--KRLRSLLIDDNGDDEF 112
FTV + R + + Q +RH+++K+ + PF I+ V + + + GDD+F
Sbjct: 16 FTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDF 73
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 135 MFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLK 193
MF S+N IPK I + +L LNL I +P+ + +L L +L++ S +
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 194 ELPQGFGKLINL 205
+PQ L L
Sbjct: 692 RIPQAMSALTML 703
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 67 PFIDSLGQNVRHSMVKL-----GKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQL 121
P + +L QN ++++ +L G P + + L SL + N +L+ +P
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-----YLSGTIPSS 434
Query: 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIE--KLVHLRYLNLSRLKIEKLPETLCELY 179
L+ LR L ++W N EIP+ + K + L+ + L E +P L
Sbjct: 435 LGSLSKLRDL-----KLW-LNMLEGEIPQELMYVKTLETLILDFNDLTGE-IPSGLSNCT 487
Query: 180 NLQLLNVESCQDLKELPQGFGKLINLMYL 208
NL +++ + + E+P+ G+L NL L
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAIL 516
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 135 MFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLK 193
MF S+N IPK I + +L LNL I +P+ + +L L +L++ S +
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 194 ELPQGFGKLINL 205
+PQ L L
Sbjct: 695 RIPQAMSALTML 706
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 67 PFIDSLGQNVRHSMVKL-----GKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQL 121
P + +L QN ++++ +L G P + + L SL + N +L+ +P
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-----YLSGTIPSS 437
Query: 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIE--KLVHLRYLNLSRLKIEKLPETLCELY 179
L+ LR L ++W N EIP+ + K + L+ + L E +P L
Sbjct: 438 LGSLSKLRDL-----KLW-LNMLEGEIPQELMYVKTLETLILDFNDLTGE-IPSGLSNCT 490
Query: 180 NLQLLNVESCQDLKELPQGFGKLINLMYL 208
NL +++ + + E+P+ G+L NL L
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAIL 519
>pdb|2DQB|A Chain A, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|B Chain B, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|C Chain C, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|D Chain D, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|E Chain E, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|F Chain F, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
Length = 376
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 172 PETLCELYNLQLLNVESCQDLKELPQGFGKLIN---LMYLLNRGTESL--RYLPAGIERL 226
PE L E+ LQ L +E DL LP+ +++ L Y + E+ R AG++
Sbjct: 216 PEELKEVELLQALALEEGLDLLRLPELDRRVLVRQLLGYFITAAIEATHRRVEEAGVQSA 275
Query: 227 TSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEAL 279
++RR + G L+ K + Y H R+R+K E VLE L
Sbjct: 276 EAVRRHPSRLAALGEEAEKALKALKAFLXERFYR-HPEVLRERRKAEAVLEGL 327
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 93 FCSVKRLRSLLIDDNGDDEFWLTEVLP-QLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
F +K L +L + DN + LP +FD+L L L Q+ S P+
Sbjct: 81 FKELKNLETLWVTDNK------LQALPIGVFDQLVNLAELRLDRNQLKSL------PPRV 128
Query: 152 IEKLVHLRYLNLSRLKIEKLP----ETLCELYNLQLLNVESCQDLKELPQG-FGKLINLM 206
+ L L YL+L +++ LP + L L L+L N + LK +P+G F KL L
Sbjct: 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ----LKRVPEGAFDKLTELK 184
Query: 207 YLLNRGTESLRYLPAG 222
L L+ +P G
Sbjct: 185 T-LKLDNNQLKRVPEG 199
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 26/121 (21%)
Query: 283 PNLKHL---GIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYS 339
P L+HL G H +GN + + +L L IL LS C L S++Q F S
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC----------DLSSIDQHAFTS 498
Query: 340 MGSVKRVGDEFLGVESDHGR-ASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRL 398
+ + V+ H R SSS+ A LK I Y+ ++ I ++P L
Sbjct: 499 LKMMNH-------VDLSHNRLTSSSIEALSHLKGI-----YLNLASNHISIILPSLLPIL 546
Query: 399 S 399
S
Sbjct: 547 S 547
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET-LCELYN 180
+D+ LR LD A + +GF++E+ + L+H+ L L+ +K T L EL
Sbjct: 175 YDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHIPALAGKVLRFQKAFLTQLDELLT 234
Query: 181 LQLLNVESCQDLKELPQGF 199
+ + Q ++L + F
Sbjct: 235 EHRMTWDPAQPPRDLTEAF 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,707,784
Number of Sequences: 62578
Number of extensions: 588727
Number of successful extensions: 1279
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 34
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)