Query 044264
Match_columns 439
No_of_seqs 231 out of 3495
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.9E-29 4.1E-34 269.4 20.4 389 14-435 471-908 (1153)
2 PLN00113 leucine-rich repeat r 100.0 2.1E-28 4.5E-33 260.9 15.2 286 72-378 116-414 (968)
3 PLN00113 leucine-rich repeat r 100.0 3.3E-28 7.2E-33 259.4 16.4 334 72-430 91-438 (968)
4 KOG4658 Apoptotic ATPase [Sign 99.9 5.1E-27 1.1E-31 238.9 14.0 394 2-430 447-856 (889)
5 KOG0444 Cytoskeletal regulator 99.9 5E-28 1.1E-32 225.5 -5.2 333 73-434 31-376 (1255)
6 KOG4194 Membrane glycoprotein 99.9 2.7E-25 5.8E-30 205.7 4.4 319 74-431 102-427 (873)
7 PLN03210 Resistant to P. syrin 99.9 3.5E-23 7.7E-28 221.5 20.5 337 73-434 588-944 (1153)
8 KOG4194 Membrane glycoprotein 99.9 4.5E-24 9.7E-29 197.7 2.2 320 72-428 123-447 (873)
9 KOG0444 Cytoskeletal regulator 99.9 4E-24 8.7E-29 199.6 -2.1 297 87-427 93-393 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 5.5E-24 1.2E-28 188.8 -2.3 240 74-341 68-308 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 1.2E-21 2.7E-26 174.0 -7.3 268 122-431 41-308 (565)
12 KOG0618 Serine/threonine phosp 99.7 3.9E-20 8.5E-25 180.3 -3.4 194 192-408 253-488 (1081)
13 KOG0618 Serine/threonine phosp 99.7 1.9E-19 4.1E-24 175.6 -3.0 322 76-431 47-418 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 3E-16 6.5E-21 157.3 12.2 255 98-431 202-456 (788)
15 PRK15370 E3 ubiquitin-protein 99.6 7.5E-16 1.6E-20 155.4 9.0 245 126-432 178-427 (754)
16 PRK15370 E3 ubiquitin-protein 99.6 2.9E-15 6.3E-20 151.1 10.1 248 74-379 178-426 (754)
17 KOG0617 Ras suppressor protein 99.6 5.6E-17 1.2E-21 128.2 -2.9 156 154-321 31-187 (264)
18 KOG0617 Ras suppressor protein 99.6 3.9E-17 8.4E-22 129.2 -4.1 152 94-260 30-182 (264)
19 PRK15387 E3 ubiquitin-protein 99.5 8.6E-14 1.9E-18 139.9 14.3 174 157-379 283-456 (788)
20 KOG4658 Apoptotic ATPase [Sign 99.5 7.6E-15 1.6E-19 150.4 5.9 308 87-435 514-844 (889)
21 cd00116 LRR_RI Leucine-rich re 99.5 1.2E-15 2.5E-20 142.5 -2.8 94 116-215 13-120 (319)
22 KOG4237 Extracellular matrix p 99.5 4.2E-14 9.1E-19 126.3 6.5 145 57-213 49-198 (498)
23 cd00116 LRR_RI Leucine-rich re 99.5 1.8E-14 3.9E-19 134.5 2.8 242 95-341 21-289 (319)
24 KOG4237 Extracellular matrix p 99.5 1.2E-14 2.5E-19 129.8 0.9 239 81-341 53-357 (498)
25 KOG1909 Ran GTPase-activating 99.1 2E-11 4.2E-16 107.9 -0.4 248 118-408 22-310 (382)
26 KOG0532 Leucine-rich repeat (L 99.0 9.5E-12 2E-16 116.4 -3.9 195 95-317 73-270 (722)
27 COG4886 Leucine-rich repeat (L 99.0 4.8E-10 1E-14 107.8 7.2 183 122-325 112-295 (394)
28 KOG4341 F-box protein containi 99.0 3.2E-11 7E-16 108.9 -1.2 265 153-435 161-441 (483)
29 KOG3207 Beta-tubulin folding c 99.0 2.1E-10 4.5E-15 104.3 3.7 193 122-320 142-339 (505)
30 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.4E-15 101.2 1.5 205 171-408 206-411 (490)
31 KOG4341 F-box protein containi 99.0 4.7E-11 1E-15 107.8 -1.0 259 156-436 138-417 (483)
32 KOG3207 Beta-tubulin folding c 98.9 7.9E-11 1.7E-15 107.0 -1.4 205 123-341 118-337 (505)
33 KOG1259 Nischarin, modulator o 98.9 1.8E-10 3.9E-15 99.8 0.2 226 92-341 177-410 (490)
34 PF14580 LRR_9: Leucine-rich r 98.9 1.5E-09 3.2E-14 89.9 5.2 125 95-236 17-149 (175)
35 KOG0532 Leucine-rich repeat (L 98.9 1.1E-10 2.4E-15 109.5 -1.8 193 126-340 75-270 (722)
36 COG4886 Leucine-rich repeat (L 98.9 1.8E-09 4E-14 103.8 6.0 185 90-300 109-294 (394)
37 PF14580 LRR_9: Leucine-rich r 98.9 1E-09 2.3E-14 90.8 3.5 128 122-260 15-149 (175)
38 KOG1909 Ran GTPase-activating 98.9 7.4E-10 1.6E-14 98.1 2.1 240 92-341 25-309 (382)
39 KOG2120 SCF ubiquitin ligase, 98.8 3.4E-10 7.4E-15 98.0 -1.2 180 180-379 186-374 (419)
40 KOG2120 SCF ubiquitin ligase, 98.7 1.2E-10 2.7E-15 100.7 -8.3 180 204-407 186-374 (419)
41 PLN03150 hypothetical protein; 98.6 1.3E-07 2.9E-12 95.5 8.5 106 127-238 419-526 (623)
42 KOG0531 Protein phosphatase 1, 98.6 9.2E-09 2E-13 99.2 -0.8 106 122-238 91-197 (414)
43 PLN03150 hypothetical protein; 98.5 1.3E-07 2.9E-12 95.4 6.9 106 157-262 419-526 (623)
44 PF13855 LRR_8: Leucine rich r 98.3 4.6E-07 1E-11 61.4 3.4 39 151-189 20-59 (61)
45 KOG2982 Uncharacterized conser 98.3 3.9E-07 8.4E-12 79.4 3.5 193 123-346 68-265 (418)
46 KOG0531 Protein phosphatase 1, 98.3 1.5E-07 3.2E-12 90.8 -0.6 233 78-341 76-316 (414)
47 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.6E-11 59.4 3.4 61 97-168 1-61 (61)
48 KOG3665 ZYG-1-like serine/thre 98.2 8.4E-07 1.8E-11 89.6 3.5 157 156-316 122-284 (699)
49 PRK15386 type III secretion pr 98.1 1E-05 2.2E-10 75.6 8.0 64 122-197 48-112 (426)
50 COG5238 RNA1 Ran GTPase-activa 98.1 3.8E-06 8.3E-11 72.4 4.3 256 122-407 26-314 (388)
51 PF12799 LRR_4: Leucine Rich r 98.0 4.5E-06 9.8E-11 51.9 3.2 34 157-190 2-35 (44)
52 KOG1859 Leucine-rich repeat pr 98.0 1.6E-07 3.5E-12 91.1 -5.8 126 180-319 165-291 (1096)
53 KOG1859 Leucine-rich repeat pr 98.0 4.8E-07 1E-11 88.0 -3.7 110 148-262 179-290 (1096)
54 KOG1947 Leucine rich repeat pr 97.9 1.7E-06 3.8E-11 85.5 -0.3 235 178-436 187-443 (482)
55 PRK15386 type III secretion pr 97.9 2.2E-05 4.8E-10 73.4 6.5 70 274-349 43-113 (426)
56 KOG2982 Uncharacterized conser 97.9 1.2E-06 2.5E-11 76.5 -1.8 225 157-428 46-287 (418)
57 KOG3665 ZYG-1-like serine/thre 97.8 5.3E-06 1.2E-10 83.9 1.3 130 126-262 122-261 (699)
58 KOG1947 Leucine rich repeat pr 97.8 1.8E-06 3.9E-11 85.4 -2.4 228 155-412 187-443 (482)
59 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.6E-10 49.3 2.7 40 126-172 1-40 (44)
60 KOG4579 Leucine-rich repeat (L 97.7 2.4E-05 5.2E-10 60.5 2.4 85 122-214 49-134 (177)
61 COG5238 RNA1 Ran GTPase-activa 97.6 2E-05 4.3E-10 68.2 0.8 141 279-430 153-313 (388)
62 KOG1644 U2-associated snRNP A' 97.3 0.00028 6.1E-09 58.5 4.5 81 126-215 42-125 (233)
63 KOG1644 U2-associated snRNP A' 97.3 0.00012 2.5E-09 60.8 2.0 80 156-238 42-124 (233)
64 KOG2123 Uncharacterized conser 97.3 8.8E-06 1.9E-10 70.5 -5.1 88 277-375 35-124 (388)
65 KOG4579 Leucine-rich repeat (L 97.1 0.0002 4.3E-09 55.6 1.4 90 96-198 52-141 (177)
66 KOG2123 Uncharacterized conser 96.7 0.00015 3.2E-09 63.1 -2.9 80 152-233 37-123 (388)
67 KOG3864 Uncharacterized conser 96.6 0.00018 3.9E-09 59.7 -2.5 66 366-433 123-189 (221)
68 KOG2739 Leucine-rich acidic nu 96.6 0.00067 1.5E-08 58.7 0.6 36 155-190 64-102 (260)
69 KOG2739 Leucine-rich acidic nu 96.5 0.00061 1.3E-08 58.9 -0.0 90 148-238 35-127 (260)
70 PF00560 LRR_1: Leucine Rich R 95.9 0.0025 5.4E-08 32.8 0.3 17 158-174 2-18 (22)
71 KOG3864 Uncharacterized conser 95.8 0.00063 1.4E-08 56.5 -3.5 70 326-410 121-190 (221)
72 PF13306 LRR_5: Leucine rich r 95.2 0.062 1.4E-06 42.3 6.4 103 92-212 7-112 (129)
73 PF13306 LRR_5: Leucine rich r 94.7 0.053 1.1E-06 42.7 4.6 81 121-212 7-90 (129)
74 PF00560 LRR_1: Leucine Rich R 94.5 0.017 3.6E-07 29.7 0.8 21 180-201 1-21 (22)
75 PF13504 LRR_7: Leucine rich r 94.2 0.025 5.5E-07 26.9 1.1 15 157-171 2-16 (17)
76 KOG0473 Leucine-rich repeat pr 93.5 0.0035 7.5E-08 53.4 -4.6 84 124-215 40-123 (326)
77 KOG0473 Leucine-rich repeat pr 91.6 0.0091 2E-07 50.9 -4.5 88 93-193 38-125 (326)
78 smart00367 LRR_CC Leucine-rich 91.4 0.097 2.1E-06 28.1 0.9 18 419-436 1-18 (26)
79 smart00369 LRR_TYP Leucine-ric 90.3 0.25 5.4E-06 26.4 2.0 19 156-174 2-20 (26)
80 smart00370 LRR Leucine-rich re 90.3 0.25 5.4E-06 26.4 2.0 19 156-174 2-20 (26)
81 KOG4308 LRR-containing protein 82.6 0.064 1.4E-06 52.4 -5.4 35 156-190 144-183 (478)
82 KOG4308 LRR-containing protein 76.7 0.1 2.3E-06 51.0 -6.0 165 152-320 111-303 (478)
83 smart00364 LRR_BAC Leucine-ric 73.5 2.1 4.6E-05 22.9 1.1 17 157-173 3-19 (26)
84 PF13516 LRR_6: Leucine Rich r 70.7 2 4.4E-05 22.2 0.7 11 180-190 3-13 (24)
85 smart00365 LRR_SD22 Leucine-ri 66.5 4.3 9.4E-05 21.7 1.4 14 156-169 2-15 (26)
86 PF14162 YozD: YozD-like prote 62.8 8.8 0.00019 24.1 2.4 20 7-26 10-29 (57)
87 KOG3763 mRNA export factor TAP 59.3 5.2 0.00011 39.2 1.5 80 154-233 216-307 (585)
88 smart00368 LRR_RI Leucine rich 53.8 9.6 0.00021 20.6 1.4 13 157-169 3-15 (28)
89 KOG3763 mRNA export factor TAP 30.3 40 0.00086 33.4 2.4 82 123-209 215-307 (585)
90 COG3432 Predicted transcriptio 20.6 2.1E+02 0.0046 21.1 4.1 40 9-51 46-85 (95)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=1.9e-29 Score=269.39 Aligned_cols=389 Identities=20% Similarity=0.206 Sum_probs=195.4
Q ss_pred HHHHHHhCCCCcceecCCCCCceeeeecHHHHHHHHHhccCce-------EEEeeCCCCC-ccccccCCceeEEEEEcCC
Q 044264 14 CFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNEC-------FTVEIDGREE-PFIDSLGQNVRHSMVKLGK 85 (439)
Q Consensus 14 ~~~~Lv~~sl~~~~~~~~~~~~~~~~~hd~~~d~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~ 85 (439)
-++.|++++|++... ..++|||+++++|+++++++. +..+...... ........+++.+.+....
T Consensus 471 ~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred ChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 377899999997642 247999999999999988653 1111100000 0001113456666655444
Q ss_pred CCCc---CcccCCCCCeeEEEecCCCCCh-hhHhhhhhHhhhcC-CceeEEeCCccccccccccccccccccccccccce
Q 044264 86 GAPF---PISFCSVKRLRSLLIDDNGDDE-FWLTEVLPQLFDEL-TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRY 160 (439)
Q Consensus 86 ~~~~---~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 160 (439)
..++ +..|.+|++|+.|.+..+..+. ......+|..+..+ +.||.|++.+ +. ...+|..+ .+.+|+.
T Consensus 544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~------~~-l~~lP~~f-~~~~L~~ 615 (1153)
T PLN03210 544 IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK------YP-LRCMPSNF-RPENLVK 615 (1153)
T ss_pred cceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC------CC-CCCCCCcC-CccCCcE
Confidence 4322 3456677777777775542100 00112233334443 2366666655 44 44444443 3445555
Q ss_pred eecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccc
Q 044264 161 LNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRG 240 (439)
Q Consensus 161 L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 240 (439)
|++.++.+..+|..+..+++|+.|+++++..+..+|. ++.+++|+.|++.+|..+..+|..+..+++|+.|++.+|...
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 5555555555555555555555555555444444443 444555555555555544555555555555555555554433
Q ss_pred cccccccccccCcceeeecccCCcchhcc------------CChHHHHHhCCCCCCccEEEEeeccCCcc-------CCc
Q 044264 241 VARSSELENKKNLIDLLLYFGHGNEERKR------------KKDEEVLEALQPPPNLKHLGIHQYRGNNV-------HPH 301 (439)
Q Consensus 241 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------l~~ 301 (439)
..++..+ .+++|+.|.++++........ .....++..+ .+++|++|.+.++..... .+.
T Consensus 695 ~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 695 EILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchh
Confidence 3333332 344444444444321000000 0111111111 122333333322111000 000
Q ss_pred hhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCC
Q 044264 302 WMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYV 380 (439)
Q Consensus 302 ~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 380 (439)
....+++|+.|++++|.....+|. ++++++|+.|++++|..++.+|.. ..+++|+.|++++|..
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---------------~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---------------INLESLESLDLSGCSR 837 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---------------CCccccCEEECCCCCc
Confidence 011234555555555555555554 555556666666655555555432 1244455555555444
Q ss_pred ccccccC----------------CCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCcchhh
Q 044264 381 LKEWDYG----------------DTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQK 435 (439)
Q Consensus 381 l~~~~~~----------------~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~~l~~ 435 (439)
+..++.. .+.....+++|+.|++.+|+.++.+|..+..+++|+.+++++|++|+.
T Consensus 838 L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 838 LRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred cccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 3332210 011224678899999999999999988888899999999999988763
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=2.1e-28 Score=260.95 Aligned_cols=286 Identities=20% Similarity=0.233 Sum_probs=216.6
Q ss_pred cCCceeEEEEEcCCCC-CcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGA-PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
...+++++.+.++... .+|. ..+++|++|++++|. +....|..+..+++|++|++++ |.+...+|.
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~-----~~~~~p~~~~~l~~L~~L~L~~------n~l~~~~p~ 182 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM-----LSGEIPNDIGSFSSLKVLDLGG------NVLVGKIPN 182 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc-----ccccCChHHhcCCCCCEEECcc------CcccccCCh
Confidence 3577888888777663 3443 457889999999987 5667788888999999999998 776667888
Q ss_pred ccccccccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccc
Q 044264 151 NIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSL 229 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 229 (439)
.+.++++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++.+++|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 8889999999999998855 678888899999999999888666788888999999999999888777788888889999
Q ss_pred ccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCc
Q 044264 230 RRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDL 309 (439)
Q Consensus 230 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L 309 (439)
+.|++..|...+..+..+..+++|+.|++++|. ....++..+..+++|+.|++++|.....+|..+..+++|
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--------l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 334 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS--------LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCe--------eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence 999998888777778888888889999888774 223455667778888888888887776557777888888
Q ss_pred cEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccc----------cCCCCCCCCCCcCCCCcceeeccCC
Q 044264 310 RILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGV----------ESDHGRASSSVVAFPKLKTIQFWDM 378 (439)
Q Consensus 310 ~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~l~~L~~L~l~~~ 378 (439)
+.|++++|.....+|. ++.+++|+.|++++|.....++..+... +...+..+..+..+++|+.|++.+|
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 8888888877766665 7777888888888877544444332211 1111122333455666666666655
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3.3e-28 Score=259.36 Aligned_cols=334 Identities=20% Similarity=0.245 Sum_probs=252.4
Q ss_pred cCCceeEEEEEcCCCC-CcCcccC-CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGA-PFPISFC-SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 149 (439)
..+.++.+.+.++... .+|..+. .+++|++|++++|. +.+..|. ..+++|++|++++ |.+...+|
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~-----l~~~~p~--~~l~~L~~L~Ls~------n~~~~~~p 157 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN-----FTGSIPR--GSIPNLETLDLSN------NMLSGEIP 157 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc-----cccccCc--cccCCCCEEECcC------CcccccCC
Confidence 3578899999888764 6777655 89999999999987 5555553 5689999999999 77666788
Q ss_pred cccccccccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcc
Q 044264 150 KNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTS 228 (439)
Q Consensus 150 ~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 228 (439)
..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++.+++
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 88999999999999999964 88999999999999999999977788999999999999999999987789999999999
Q ss_pred cccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccC
Q 044264 229 LRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTD 308 (439)
Q Consensus 229 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 308 (439)
|++|++..|...+..+..++.+++|+.|+++.+. ....++..+..+++|++|++++|.....+|.++..+++
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK--------LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCe--------eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 9999999999888889999999999999999884 22345667778999999999999887766888999999
Q ss_pred ccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccC----------CCCCCCCCCcCCCCcceeeccC
Q 044264 309 LRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVES----------DHGRASSSVVAFPKLKTIQFWD 377 (439)
Q Consensus 309 L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~----------~~~~~~~~~~~l~~L~~L~l~~ 377 (439)
|+.|++++|......|. ++.+++|+.|++++|.....++..+..... ..+..+..+..+++|+.|++++
T Consensus 310 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence 99999999998877775 889999999999999865555543211110 0111222233444555555544
Q ss_pred CCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCC
Q 044264 378 MYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 378 ~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c 430 (439)
+.-...++ .....+++|+.|++++|.....+|..+..+++|+.|++++|
T Consensus 390 n~l~~~~p----~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 390 NSLEGEIP----KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred CEecccCC----HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC
Confidence 32111111 11134556666666666433344444444444444444443
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.94 E-value=5.1e-27 Score=238.89 Aligned_cols=394 Identities=24% Similarity=0.312 Sum_probs=262.2
Q ss_pred CCCcchHHHHHHHHHHHHhCCCCcceecCCCCCceeeeecHHHHHHHHHhcc-----CceEEEeeC-CCCCccccccCCc
Q 044264 2 RPNKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSK-----NECFTVEID-GREEPFIDSLGQN 75 (439)
Q Consensus 2 ~~~~~~~~~~~~~~~~Lv~~sl~~~~~~~~~~~~~~~~~hd~~~d~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~ 75 (439)
++++++++.|.+|+.+||+++|++..... ++...|+|||++|++|.++|+ ++....... +.....-...+..
T Consensus 447 ~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~ 524 (889)
T KOG4658|consen 447 DGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNS 524 (889)
T ss_pred ccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhh
Confidence 46889999999999999999999987755 677889999999999999999 565444332 1111222334688
Q ss_pred eeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccc
Q 044264 76 VRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155 (439)
Q Consensus 76 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 155 (439)
+|++++.+.....++.. ..++.|++|-+.++. ..+....+.+|..++.|++|||++ |.-...+|..++.+
T Consensus 525 ~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~---~~l~~is~~ff~~m~~LrVLDLs~------~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNS---DWLLEISGEFFRSLPLLRVLDLSG------NSSLSKLPSSIGEL 594 (889)
T ss_pred eeEEEEeccchhhccCC-CCCCccceEEEeecc---hhhhhcCHHHHhhCcceEEEECCC------CCccCcCChHHhhh
Confidence 99999999999888776 356789999999985 124556667799999999999998 76678899999999
Q ss_pred cccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCC---cccccCcccccc
Q 044264 156 VHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLP---AGIERLTSLRRV 232 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L 232 (439)
-+||+|+++++.++.+|..++++..|.+|++..+.....+|.....|.+|++|.+.... ..... ..+.++.+|+.+
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhh
Confidence 99999999999999999999999999999999998777777777779999999987654 11111 223444445544
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhh-----c-c
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM-----S-L 306 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~-----~-~ 306 (439)
....... .....+..++.|..+...-..... ........+..+.+|+.|.+.++........+.. . +
T Consensus 674 s~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~-----~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f 746 (889)
T KOG4658|consen 674 SITISSV--LLLEDLLGMTRLRSLLQSLSIEGC-----SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCF 746 (889)
T ss_pred eeecchh--HhHhhhhhhHHHHHHhHhhhhccc-----ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhH
Confidence 4432221 222233444444433222110000 2234455677788889999888877642122211 2 5
Q ss_pred cCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCccee-eccCCCCccccc
Q 044264 307 TDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTI-QFWDMYVLKEWD 385 (439)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L-~l~~~~~l~~~~ 385 (439)
+++..+.+.+|.....+.+....|+|+.|.+.+|..++.+.+.......... ....|+++..+ .+.+.+.++.+.
T Consensus 747 ~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~----~i~~f~~~~~l~~~~~l~~l~~i~ 822 (889)
T KOG4658|consen 747 PNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE----LILPFNKLEGLRMLCSLGGLPQLY 822 (889)
T ss_pred HHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc----EEecccccccceeeecCCCCceeE
Confidence 5677777777766666655556688888888888876665443221110000 12234444444 344444444433
Q ss_pred cCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCC
Q 044264 386 YGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 386 ~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c 430 (439)
... -.+|.|+++.+..||.+..+| .+.++.|.+|
T Consensus 823 ~~~----l~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 823 WLP----LSFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred ecc----cCccchhheehhcCcccccCc-------cccccceecc
Confidence 222 235567777777776655544 4444555554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=5e-28 Score=225.45 Aligned_cols=333 Identities=21% Similarity=0.226 Sum_probs=260.0
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccc-ccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGF-IKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~ 151 (439)
.+.++.+.+.......+|..+..+.+|++|.+.+|. +.... ..++.++.||.+.+.+ |++ ...+|+.
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-----L~~vh-GELs~Lp~LRsv~~R~------N~LKnsGiP~d 98 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-----LISVH-GELSDLPRLRSVIVRD------NNLKNSGIPTD 98 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-----hHhhh-hhhccchhhHHHhhhc------cccccCCCCch
Confidence 466888888888889999999999999999999886 34333 3378889999999988 553 2347888
Q ss_pred cccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchh-hhhccccceeeccCccccccCCcccccCcccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGIERLTSLR 230 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (439)
+.++..|.+|||++|+++++|..+..-+++-.|++++|+ +..+|.. +-+|..|-.|++++|+ +..+|..+.++.+|+
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQ 176 (1255)
T ss_pred hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhh
Confidence 889999999999999999999999999999999999988 8888875 5688999999999887 688888899999999
Q ss_pred cccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCcc
Q 044264 231 RVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLR 310 (439)
Q Consensus 231 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 310 (439)
+|.+++|.....-...+..+++|+.|.+++... ....+|..+..+.||..++++.|..... |..+-.+++|+
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR-------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~Lr 248 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR-------TLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLR 248 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccc-------hhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhh
Confidence 999999888777777788888888888887632 3466778888888999999999888877 88888899999
Q ss_pred EEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccc----------cCCC-CCCCCCCcCCCCcceeeccCCC
Q 044264 311 ILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGV----------ESDH-GRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 311 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~----------~~~~-~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
.|++++|.+++.-...+...+|+.|+++.|. +..+|...... +..+ .++|++++.+-+|+.+...++
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN- 326 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN- 326 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-
Confidence 9999998876655556777888888888887 66666542111 1111 124555666666666666553
Q ss_pred CccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCcchh
Q 044264 380 VLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQ 434 (439)
Q Consensus 380 ~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~~l~ 434 (439)
.|+-++.+ ..-+++|++|.+..+ .+.++|+.|.-++-|+.||+..+|++.
T Consensus 327 ~LElVPEg----lcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 327 KLELVPEG----LCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccccCchh----hhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCcc
Confidence 23333322 145789999999887 788899999999999999999998863
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.7e-25 Score=205.74 Aligned_cols=319 Identities=19% Similarity=0.195 Sum_probs=175.1
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc-cc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK-NI 152 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~ 152 (439)
.+++.+.+..+....+|.-.....+++.|++.+|. +...-.+.+..++.||+|||+. |. +..+|. .+
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-----I~sv~se~L~~l~alrslDLSr------N~-is~i~~~sf 169 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-----ISSVTSEELSALPALRSLDLSR------NL-ISEIPKPSF 169 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccc-----cccccHHHHHhHhhhhhhhhhh------ch-hhcccCCCC
Confidence 34444444444444444433334445555555554 4444444555556666666665 44 333332 23
Q ss_pred ccccccceeecCCCCCccCC-hhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccC-CcccccCccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYL-PAGIERLTSL 229 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L 229 (439)
..-.++++|+|++|.|+.+- ..+..+.+|..|.++.|+ ++.+|. .|++|++|+.|++..|.. +.. ...|..+++|
T Consensus 170 p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl 247 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSL 247 (873)
T ss_pred CCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhh
Confidence 33455666666666666553 245555566666666665 555554 445566666666666653 221 2234556666
Q ss_pred ccccceeeccccccccccccccCcceeeecccCCcchhccCChHHH-HHhCCCCCCccEEEEeeccCCccCCchhhcccC
Q 044264 230 RRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEV-LEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTD 308 (439)
Q Consensus 230 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 308 (439)
+.|.+..|.+..-....|..+.+++.|++..|. ...+ ..++..+..|+.|++++|.+..+-+.....+++
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~---------l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR---------LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceeecccch---------hhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 666666555544444445555566666665552 1111 234455666666666666666554444556666
Q ss_pred ccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccC
Q 044264 309 LRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYG 387 (439)
Q Consensus 309 L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 387 (439)
|++|+|+.|.+..--+. +..+..|+.|++++|. +..+-+ ..+..+.+|++|++..+. +.....+
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e-------------~af~~lssL~~LdLr~N~-ls~~IED 383 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAE-------------GAFVGLSSLHKLDLRSNE-LSWCIED 383 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHh-------------hHHHHhhhhhhhcCcCCe-EEEEEec
Confidence 77777766655433332 5556666666666665 333222 125567777788777643 2211111
Q ss_pred CCcccccCcccceeeecccccccCCCC-CCCCCCCccEEEEcCCc
Q 044264 388 DTIKGEIMPRLSSLCIARCPTLRALPD-HLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 388 ~~~~~~~~p~L~~L~i~~c~~l~~l~~-~l~~~~~L~~L~i~~c~ 431 (439)
.......+|+|++|.+.|+ +++.||. .+.++++|+.||+.++.
T Consensus 384 aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred chhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc
Confidence 2222235788888888887 7777765 35668888888887774
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3.5e-23 Score=221.48 Aligned_cols=337 Identities=21% Similarity=0.229 Sum_probs=217.9
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
+.++|.+.+.+.....+|..+ ...+|+.|++.++. ...++..+..+++|+.|++++ +.....+|. +
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~------l~~L~~~~~~l~~Lk~L~Ls~------~~~l~~ip~-l 653 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK------LEKLWDGVHSLTGLRNIDLRG------SKNLKEIPD-L 653 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc------ccccccccccCCCCCEEECCC------CCCcCcCCc-c
Confidence 445666666666666666665 45677777777665 334455566677777777776 443455553 5
Q ss_pred ccccccceeecCCCC-CccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 153 EKLVHLRYLNLSRLK-IEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
..+++|++|++++|. +..+|..++++++|+.|++++|..+..+|..+ ++++|+.|++++|..+..+|.. ..+|+.
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~ 729 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISW 729 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCe
Confidence 667777777777765 66777777777777777777776666676654 6677777777777655555532 346666
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccE
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 311 (439)
|++..+... .++..+ .+++|+.|.+..+....... ......+.....+++|+.|++++|.....+|..+..+++|+.
T Consensus 730 L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 730 LDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWE-RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred eecCCCccc-cccccc-cccccccccccccchhhccc-cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 666665532 233332 45677777765532111000 000000111223578999999998776655888999999999
Q ss_pred EeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCcccccc------CCCCCCCCCCcCCCCcceeeccCCCCccccc
Q 044264 312 LTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVE------SDHGRASSSVVAFPKLKTIQFWDMYVLKEWD 385 (439)
Q Consensus 312 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 385 (439)
|++++|...+.+|....+++|+.|++++|..+..++....... ......|.++..+++|+.|++++|.+++.++
T Consensus 807 L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 807 LEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred EECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC
Confidence 9999998888888755789999999999987776553211100 0111244457789999999999999999877
Q ss_pred cCCCcccccCcccceeeecccccccCCCCCC-------------CCCCCccEEEEcCCcchh
Q 044264 386 YGDTIKGEIMPRLSSLCIARCPTLRALPDHL-------------LQTTTLQKLEIWGCPNLQ 434 (439)
Q Consensus 386 ~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l-------------~~~~~L~~L~i~~c~~l~ 434 (439)
... ..+++|+.+++.+|+.+..++..- ..++....+...+|.++.
T Consensus 887 ~~~----~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 887 LNI----SKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred ccc----ccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 543 568999999999999887653210 123344555667776654
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=4.5e-24 Score=197.72 Aligned_cols=320 Identities=18% Similarity=0.155 Sum_probs=252.0
Q ss_pred cCCceeEEEEEcCCCCCcC-cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGAPFP-ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
....+..+.+..+.+..+. ..+..++.||+|+++.|. +...--..|..-.++++|+|++ |.+...-..
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-----is~i~~~sfp~~~ni~~L~La~------N~It~l~~~ 191 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-----ISEIPKPSFPAKVNIKKLNLAS------NRITTLETG 191 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-----hhcccCCCCCCCCCceEEeecc------ccccccccc
Confidence 3577899999999887774 456678999999999987 5555445577778899999999 884444456
Q ss_pred ccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCccccc-chhhhhccccceeeccCccccccCCcccccCcc
Q 044264 151 NIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKEL-PQGFGKLINLMYLLNRGTESLRYLPAGIERLTS 228 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 228 (439)
.|..+.+|.+|.|+.|.++.+|. .+.++++|+.|++..|. +... -..|..|++|+.|.+..|....--...|..|.+
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK 270 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc
Confidence 78888999999999999999996 56679999999999998 5544 345889999999999998854433445788999
Q ss_pred cccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccC
Q 044264 229 LRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTD 308 (439)
Q Consensus 229 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 308 (439)
+++|++..|........++-+++.|+.|++++|... ..-++.+.-+++|++|+|++|.+..+.+..+..+..
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~--------rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ--------RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ 342 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhh--------eeecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence 999999999988888888999999999999998421 222566778899999999999999986778889999
Q ss_pred ccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccC
Q 044264 309 LRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYG 387 (439)
Q Consensus 309 L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 387 (439)
|+.|.|++|........ +..+.+|+.|+++.|..--.+.+.- ..+.++|+|++|++.++ +++.++-.
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa-----------~~f~gl~~LrkL~l~gN-qlk~I~kr 410 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA-----------VAFNGLPSLRKLRLTGN-QLKSIPKR 410 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch-----------hhhccchhhhheeecCc-eeeecchh
Confidence 99999999976543333 7788999999999998443333311 22667999999999885 56766533
Q ss_pred CCcccccCcccceeeecccccccCC-CCCCCCCCCccEEEEc
Q 044264 388 DTIKGEIMPRLSSLCIARCPTLRAL-PDHLLQTTTLQKLEIW 428 (439)
Q Consensus 388 ~~~~~~~~p~L~~L~i~~c~~l~~l-~~~l~~~~~L~~L~i~ 428 (439)
. -..+++|++|++.++ .+.+| |..+..+ .|++|.+.
T Consensus 411 A---fsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 411 A---FSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred h---hccCcccceecCCCC-cceeecccccccc-hhhhhhhc
Confidence 2 256899999999998 56666 5556666 88887664
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=4e-24 Score=199.62 Aligned_cols=297 Identities=22% Similarity=0.222 Sum_probs=182.6
Q ss_pred CCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc-cccccccceeecCC
Q 044264 87 APFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN-IEKLVHLRYLNLSR 165 (439)
Q Consensus 87 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~ 165 (439)
..+|..++++..|+.|++++|. ....|..+.+-+++-+|+|++ |+ +..+|.. +-++..|-+|||++
T Consensus 93 sGiP~diF~l~dLt~lDLShNq------L~EvP~~LE~AKn~iVLNLS~------N~-IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQ------LREVPTNLEYAKNSIVLNLSY------NN-IETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred CCCCchhcccccceeeecchhh------hhhcchhhhhhcCcEEEEccc------Cc-cccCCchHHHhhHhHhhhcccc
Confidence 4455555666666666666654 334455555556666666665 54 4445443 33555566666666
Q ss_pred CCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccc-cccCCcccccCcccccccceeeccccccc
Q 044264 166 LKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTES-LRYLPAGIERLTSLRRVEKFVVGRGVARS 244 (439)
Q Consensus 166 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 244 (439)
|.+..+|+.+..+.+|++|++++|...-.--..+..|++|++|.+++++. ...+|..+..+.+|..++++.|.. ..+|
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vP 238 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVP 238 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-Ccch
Confidence 66666666666666666666666552110000122344555555555432 344666666777777777765543 3566
Q ss_pred cccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCC-CcC
Q 044264 245 SELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINC-EHL 323 (439)
Q Consensus 245 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~ 323 (439)
..+..+++|+.|.+++|. +.++.-..+...+|++|+++.|+.... |..+..+++|+.|++.+|... +.+
T Consensus 239 ecly~l~~LrrLNLS~N~---------iteL~~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNK---------ITELNMTEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred HHHhhhhhhheeccCcCc---------eeeeeccHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCC
Confidence 677777777777777773 222223333456777777777777776 777778888888888777653 456
Q ss_pred CC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceee
Q 044264 324 PP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLC 402 (439)
Q Consensus 324 ~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~ 402 (439)
|+ ++.+.+|+.+..++|. ++-+|. ++..|++|++|.+..+ .|..++. .+..+|.|+.|+
T Consensus 309 PSGIGKL~~Levf~aanN~-LElVPE--------------glcRC~kL~kL~L~~N-rLiTLPe----aIHlL~~l~vLD 368 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNK-LELVPE--------------GLCRCVKLQKLKLDHN-RLITLPE----AIHLLPDLKVLD 368 (1255)
T ss_pred ccchhhhhhhHHHHhhccc-cccCch--------------hhhhhHHHHHhccccc-ceeechh----hhhhcCCcceee
Confidence 65 7888888888877766 665554 3677899999999654 4444442 235689999999
Q ss_pred ecccccccCCCCCCCCCCCccEEEE
Q 044264 403 IARCPTLRALPDHLLQTTTLQKLEI 427 (439)
Q Consensus 403 i~~c~~l~~l~~~l~~~~~L~~L~i 427 (439)
+..+|++.--|..-..-.+|+.-+|
T Consensus 369 lreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 369 LRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred ccCCcCccCCCCcchhhhcceeeec
Confidence 9999988776654433345554444
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=5.5e-24 Score=188.85 Aligned_cols=240 Identities=25% Similarity=0.242 Sum_probs=196.7
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIE 153 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 153 (439)
..+..+.++.+...+.|+++++...+..++.++|. ...+|+.+.....|+.|+.++ +. ...+|+.++
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~------ls~lp~~i~s~~~l~~l~~s~------n~-~~el~~~i~ 134 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK------LSELPEQIGSLISLVKLDCSS------NE-LKELPDSIG 134 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhcccch------HhhccHHHhhhhhhhhhhccc------cc-eeecCchHH
Confidence 34566777788888888888888888899888886 556777788889999999988 77 677888899
Q ss_pred cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccc
Q 044264 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (439)
.+..|..|+..+|.+..+|++++++.+|..|++.++. ...+|+..-.++.|++|+...|- ++.+|..++.+.+|..|+
T Consensus 135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLY 212 (565)
T ss_pred HHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHH
Confidence 9999999999999999999999999999999999988 77777766669999999987775 688999999999999999
Q ss_pred ceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhC-CCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 234 KFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEAL-QPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 234 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
+..|... .+| +|.+|..|.+|+++.| .++.++... ..+++|..|++.+|..... |..+.-+.+|.+|
T Consensus 213 L~~Nki~-~lP-ef~gcs~L~Elh~g~N---------~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rL 280 (565)
T KOG0472|consen 213 LRRNKIR-FLP-EFPGCSLLKELHVGEN---------QIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERL 280 (565)
T ss_pred hhhcccc-cCC-CCCccHHHHHHHhccc---------HHHhhHHHHhcccccceeeeccccccccC-chHHHHhhhhhhh
Confidence 9888764 333 7889999999998887 455555444 4788888888888888887 8888888888888
Q ss_pred eecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 313 TLSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 313 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
|+++|.+..-.+.++++ .|+.|-+.||+
T Consensus 281 DlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccCCccccCCcccccc-eeeehhhcCCc
Confidence 88888776555568887 78888887775
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=1.2e-21 Score=174.03 Aligned_cols=268 Identities=25% Similarity=0.281 Sum_probs=198.2
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
++.-..|..|.+++ |. ...+.+.+.++..|.+|++.+|.+..+|++++.+..++.|+++.+. ..++|..++.
T Consensus 41 wW~qv~l~~lils~------N~-l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s 112 (565)
T KOG0472|consen 41 WWEQVDLQKLILSH------ND-LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGS 112 (565)
T ss_pred hhhhcchhhhhhcc------Cc-hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhh
Confidence 33445566777776 55 4444455667777777777777777777777777777777777776 6677777777
Q ss_pred ccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCC
Q 044264 202 LINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQP 281 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 281 (439)
+.+|+.++++.+. ...+|..++.+-.|..++...|... ..+..+..+.+|..+.+.++ ...+.+.....
T Consensus 113 ~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n---------~l~~l~~~~i~ 181 (565)
T KOG0472|consen 113 LISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGN---------KLKALPENHIA 181 (565)
T ss_pred hhhhhhhhccccc-eeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcccc---------chhhCCHHHHH
Confidence 7777777777766 4556666777777777776655543 55666677777777777766 34455555555
Q ss_pred CCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCC
Q 044264 282 PPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRAS 361 (439)
Q Consensus 282 ~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 361 (439)
++.|++|+...|..... |..++.+.+|..|++..|... .+|.|++|..|++|.++.|. ++.++.+.
T Consensus 182 m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~-i~~lpae~----------- 247 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQ-IEMLPAEH----------- 247 (565)
T ss_pred HHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccH-HHhhHHHH-----------
Confidence 78888888888888777 888999999999999988654 57788899999999998776 66666543
Q ss_pred CCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 362 SSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 362 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
...++.|..|++.++ ++++++.+. ..+.+|++|+++++ .+..+|..++++ +|+.|-+.|+|
T Consensus 248 --~~~L~~l~vLDLRdN-klke~Pde~----clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 248 --LKHLNSLLVLDLRDN-KLKEVPDEI----CLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred --hcccccceeeecccc-ccccCchHH----HHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 346889999999885 577776543 45788999999998 789999999999 99999999987
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=3.9e-20 Score=180.34 Aligned_cols=194 Identities=22% Similarity=0.152 Sum_probs=101.3
Q ss_pred ccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccC-
Q 044264 192 LKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRK- 270 (439)
Q Consensus 192 ~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~- 270 (439)
...+|++++.+.+|+.+.+..|.. ..+|..+....+|+.|.+..|... .++..+.+.++|+.|++..|.....-+..
T Consensus 253 l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l 330 (1081)
T KOG0618|consen 253 LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFL 330 (1081)
T ss_pred hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHH
Confidence 335666677777777777766663 555666666666666665555432 34444555556666666555321100000
Q ss_pred ----------------------------------------ChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCcc
Q 044264 271 ----------------------------------------KDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLR 310 (439)
Q Consensus 271 ----------------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 310 (439)
..+.....+..+++|+.|+|++|+...+....+..+..|+
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELE 410 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhH
Confidence 2233333444555666666666655555223344555566
Q ss_pred EEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCc
Q 044264 311 ILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTI 390 (439)
Q Consensus 311 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 390 (439)
.|+++||........+..++.|+.|...+|. +..+|. +..+|.|+.++++. .+|+.+.....
T Consensus 411 eL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe---------------~~~l~qL~~lDlS~-N~L~~~~l~~~- 472 (1081)
T KOG0618|consen 411 ELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPE---------------LAQLPQLKVLDLSC-NNLSEVTLPEA- 472 (1081)
T ss_pred HHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechh---------------hhhcCcceEEeccc-chhhhhhhhhh-
Confidence 6666665443222225555556665555554 444442 44566677777753 34444433221
Q ss_pred ccccC-cccceeeeccccc
Q 044264 391 KGEIM-PRLSSLCIARCPT 408 (439)
Q Consensus 391 ~~~~~-p~L~~L~i~~c~~ 408 (439)
.. |+|+.|+++|++.
T Consensus 473 ---~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 473 ---LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ---CCCcccceeeccCCcc
Confidence 12 5677777777654
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=1.9e-19 Score=175.64 Aligned_cols=322 Identities=20% Similarity=0.162 Sum_probs=180.2
Q ss_pred eeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccc
Q 044264 76 VRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155 (439)
Q Consensus 76 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 155 (439)
++++.+.+.....+|..+..+.+|+.|.++.|. ....|.....+++|++|+|.+ +. ...+|..+..+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~------i~~vp~s~~~~~~l~~lnL~~------n~-l~~lP~~~~~l 113 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY------IRSVPSSCSNMRNLQYLNLKN------NR-LQSLPASISEL 113 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhh------HhhCchhhhhhhcchhheecc------ch-hhcCchhHHhh
Confidence 777888888888888888888888888888875 445566778888888888887 55 67788888888
Q ss_pred cccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch-------------------hhhhccccceeeccCcccc
Q 044264 156 VHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ-------------------GFGKLINLMYLLNRGTESL 216 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-------------------~i~~l~~L~~L~l~~~~~~ 216 (439)
++|++|++++|.+..+|..+..+..++.+..++|..+..++. ++..+.+ .|++..|...
T Consensus 114 knl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME 191 (1081)
T ss_pred hcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh
Confidence 888888888888888888887777777777777632322221 1112222 2444444332
Q ss_pred ccCCcccccCcccccccceeeccccc------------------cccccccccCcceeeecccCCcchhccCChHHHHHh
Q 044264 217 RYLPAGIERLTSLRRVEKFVVGRGVA------------------RSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEA 278 (439)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~~~~~~~------------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 278 (439)
. ..+..+.+|+.+....+..... ....-..-.+|+.++++++ ....++.+
T Consensus 192 -~--~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n---------~l~~lp~w 259 (1081)
T KOG0618|consen 192 -V--LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN---------NLSNLPEW 259 (1081)
T ss_pred -h--hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh---------hhhcchHH
Confidence 0 1222333333333332221110 0000001123444444444 23334444
Q ss_pred CCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccC---
Q 044264 279 LQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVES--- 355 (439)
Q Consensus 279 l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~--- 355 (439)
+..+.+|+.+...+|.+... |..+....+|+.|.+..|...-..+...++.+|+.|++..|. +..+|+.++....
T Consensus 260 i~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASL 337 (1081)
T ss_pred HHhcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHH
Confidence 44455555555554444333 444444444444444444332222335568888888888877 6556553332211
Q ss_pred ---------CCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCC-CCCCCCCccEE
Q 044264 356 ---------DHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPD-HLLQTTTLQKL 425 (439)
Q Consensus 356 ---------~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~-~l~~~~~L~~L 425 (439)
.......+-..++.|+.|++.++. ++ .........++.|+.|+++++ .+.++|. .+.+++.|++|
T Consensus 338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Lt---d~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LT---DSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEEL 412 (1081)
T ss_pred HHHhhhhccccccccccchhhHHHHHHHHhcCc-cc---ccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHH
Confidence 000011112234556666666641 22 222223346777777777777 6666664 35567777777
Q ss_pred EEcCCc
Q 044264 426 EIWGCP 431 (439)
Q Consensus 426 ~i~~c~ 431 (439)
+++|++
T Consensus 413 ~LSGNk 418 (1081)
T KOG0618|consen 413 NLSGNK 418 (1081)
T ss_pred hcccch
Confidence 777763
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=3e-16 Score=157.34 Aligned_cols=255 Identities=22% Similarity=0.224 Sum_probs=169.1
Q ss_pred CeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhh
Q 044264 98 RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCE 177 (439)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~ 177 (439)
.-..|+++.+. +. .+|..+. ++|+.|++.+ |. +..+|.. +++|++|++++|.++.+|..
T Consensus 202 ~~~~LdLs~~~-----Lt-sLP~~l~--~~L~~L~L~~------N~-Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l--- 260 (788)
T PRK15387 202 GNAVLNVGESG-----LT-TLPDCLP--AHITTLVIPD------NN-LTSLPAL---PPELRTLEVSGNQLTSLPVL--- 260 (788)
T ss_pred CCcEEEcCCCC-----CC-cCCcchh--cCCCEEEccC------Cc-CCCCCCC---CCCCcEEEecCCccCcccCc---
Confidence 35567777765 23 4554443 4678888877 66 4556542 46788888888888877753
Q ss_pred ccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceee
Q 044264 178 LYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLL 257 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 257 (439)
.++|+.|++++|. +..+|.. ..+|+.|++++|. +..+|.. .++|+.|++++|.... ++.. ..+|+.|.
T Consensus 261 p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~ 328 (788)
T PRK15387 261 PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLW 328 (788)
T ss_pred ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCcccc-CCCC---cccccccc
Confidence 3577788888776 5666652 2467778887776 4556542 4678888887776543 2221 23567777
Q ss_pred ecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeee
Q 044264 258 LYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYF 337 (439)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 337 (439)
+++|. ...++. .+.+|+.|++++|.+..+ |.. .++|+.|++++|.+. .+|.. ..+|+.|++
T Consensus 329 Ls~N~---------L~~LP~---lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~LP~l--~~~L~~LdL 389 (788)
T PRK15387 329 AYNNQ---------LTSLPT---LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPAL--PSGLKELIV 389 (788)
T ss_pred cccCc---------cccccc---cccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cCccc--ccccceEEe
Confidence 77663 222221 224788888888888775 542 357888888887655 35542 357888888
Q ss_pred ccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCC
Q 044264 338 YSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLL 417 (439)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~ 417 (439)
++|. +..+|. ..++|+.|+++++. ++.++ ..+.+|+.|++++| .++.+|..+.
T Consensus 390 s~N~-Lt~LP~-----------------l~s~L~~LdLS~N~-LssIP-------~l~~~L~~L~Ls~N-qLt~LP~sl~ 442 (788)
T PRK15387 390 SGNR-LTSLPV-----------------LPSELKELMVSGNR-LTSLP-------MLPSGLLSLSVYRN-QLTRLPESLI 442 (788)
T ss_pred cCCc-ccCCCC-----------------cccCCCEEEccCCc-CCCCC-------cchhhhhhhhhccC-cccccChHHh
Confidence 8886 444443 13578889998863 55444 12457888999887 6788888888
Q ss_pred CCCCccEEEEcCCc
Q 044264 418 QTTTLQKLEIWGCP 431 (439)
Q Consensus 418 ~~~~L~~L~i~~c~ 431 (439)
.+++|+.|++++|+
T Consensus 443 ~L~~L~~LdLs~N~ 456 (788)
T PRK15387 443 HLSSETTVNLEGNP 456 (788)
T ss_pred hccCCCeEECCCCC
Confidence 89999999999885
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=7.5e-16 Score=155.36 Aligned_cols=245 Identities=20% Similarity=0.250 Sum_probs=154.0
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcccc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINL 205 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L 205 (439)
.+...|++++ .. ...+|..+ .+.|+.|++++|.++.+|..+. .+|++|++++|. +..+|..+. .+|
T Consensus 178 ~~~~~L~L~~------~~-LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L 243 (754)
T PRK15370 178 NNKTELRLKI------LG-LTTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTI 243 (754)
T ss_pred cCceEEEeCC------CC-cCcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccc
Confidence 3466777776 54 44555543 2467777777777777776554 477777777776 666766443 367
Q ss_pred ceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCc
Q 044264 206 MYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNL 285 (439)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 285 (439)
+.|++++|. +..+|..+. .+|+.|+++.|... .++..+. ++|+.|++++|.. ..++..+ .++|
T Consensus 244 ~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~L---------t~LP~~l--p~sL 306 (754)
T PRK15370 244 QEMELSINR-ITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSI---------RTLPAHL--PSGI 306 (754)
T ss_pred cEEECcCCc-cCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcc---------ccCcccc--hhhH
Confidence 777777776 346665543 46777777766554 3444343 4678888877631 2222211 2467
Q ss_pred cEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCC
Q 044264 286 KHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSV 364 (439)
Q Consensus 286 ~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (439)
+.|++++|....+ |..+ .++|+.|++++|.+.. +|. + .++|+.|++++|. +..+|.. +
T Consensus 307 ~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~-L~~LP~~--------------l 365 (754)
T PRK15370 307 THLNVQSNSLTAL-PETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQ-ITVLPET--------------L 365 (754)
T ss_pred HHHHhcCCccccC-Cccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCC-CCcCChh--------------h
Confidence 7888888777664 5443 3678888888876543 443 3 2688888888876 4444432 1
Q ss_pred cCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCC----CCCCccEEEEcCCcc
Q 044264 365 VAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLL----QTTTLQKLEIWGCPN 432 (439)
Q Consensus 365 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~----~~~~L~~L~i~~c~~ 432 (439)
.+.|+.|++++| .++.++. ...++|+.|++++| .+..+|..+. .++++..|++.+++-
T Consensus 366 --p~~L~~LdLs~N-~Lt~LP~------~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 366 --PPTITTLDVSRN-ALTNLPE------NLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred --cCCcCEEECCCC-cCCCCCH------hHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 357888888876 3444432 12346888888887 6667765443 347788888888763
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=2.9e-15 Score=151.12 Aligned_cols=248 Identities=20% Similarity=0.232 Sum_probs=157.2
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIE 153 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 153 (439)
.+...+.+.......+|..+. +.++.|++.+|. +. .+|..+ ..+|+.|++++ |. +..+|..+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-----Lt-sLP~~l--~~nL~~L~Ls~------N~-LtsLP~~l~ 240 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNE-----LK-SLPENL--QGNIKTLYANS------NQ-LTSIPATLP 240 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-----CC-cCChhh--ccCCCEEECCC------Cc-cccCChhhh
Confidence 445566776667777776553 468888888876 33 344433 25788888887 66 445665442
Q ss_pred cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccc
Q 044264 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (439)
.+|+.|++++|.+..+|..+. .+|+.|++++|. +..+|..+. .+|+.|++++|. +..+|..+. ++|+.|+
T Consensus 241 --~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~ 310 (754)
T PRK15370 241 --DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLN 310 (754)
T ss_pred --ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHH
Confidence 468888888888888887664 478888888776 666776543 478888888876 455665442 4677888
Q ss_pred ceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEe
Q 044264 234 KFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILT 313 (439)
Q Consensus 234 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~ 313 (439)
+++|.... ++..+ .++|+.|.+++|.. ..++..+ +++|+.|++++|.+..+ |..+ .++|+.|+
T Consensus 311 Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L---------t~LP~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~Ld 373 (754)
T PRK15370 311 VQSNSLTA-LPETL--PPGLKTLEAGENAL---------TSLPASL--PPELQVLDVSKNQITVL-PETL--PPTITTLD 373 (754)
T ss_pred hcCCcccc-CCccc--cccceeccccCCcc---------ccCChhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEE
Confidence 87776543 33222 25778888777631 2223222 25788888888877654 5544 25788888
Q ss_pred ecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 314 LSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 314 l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
+++|.+. .+|. +. ++|+.|++++|. +..+|..+... ...+|.+..|.+.+++
T Consensus 374 Ls~N~Lt-~LP~~l~--~sL~~LdLs~N~-L~~LP~sl~~~----------~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 374 VSRNALT-NLPENLP--AALQIMQASRNN-LVRLPESLPHF----------RGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCCcCC-CCCHhHH--HHHHHHhhccCC-cccCchhHHHH----------hhcCCCccEEEeeCCC
Confidence 8887655 3443 22 367788887776 44555432111 2335667777776654
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=5.6e-17 Score=128.25 Aligned_cols=156 Identities=23% Similarity=0.238 Sum_probs=87.7
Q ss_pred cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccc
Q 044264 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (439)
.+.++..|.+++|+++.+|+.|..+.+|+.|++++|. ++++|..+.++++|++|+++-|+ +..+|.+++.++.|+.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhh
Confidence 3444455555555555555555555555555555555 55555555555555555555444 344555555555555555
Q ss_pred ceeeccc-cccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 234 KFVVGRG-VARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 234 l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
+..|... ..++..+-.++.|+-|+++.| ..+.++..++.+.+|+.|.+..|..... |..++.+..|+.|
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dn---------dfe~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrel 178 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDN---------DFEILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLREL 178 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCC---------CcccCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHH
Confidence 5554433 234444555555555555555 3344455566666666666666666665 6666667777777
Q ss_pred eecCCCCCC
Q 044264 313 TLSHCINCE 321 (439)
Q Consensus 313 ~l~~~~~~~ 321 (439)
.+.+|....
T Consensus 179 hiqgnrl~v 187 (264)
T KOG0617|consen 179 HIQGNRLTV 187 (264)
T ss_pred hcccceeee
Confidence 777665543
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=3.9e-17 Score=129.17 Aligned_cols=152 Identities=23% Similarity=0.314 Sum_probs=78.5
Q ss_pred CCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh
Q 044264 94 CSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE 173 (439)
Q Consensus 94 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~ 173 (439)
..+++.+.|.+++|+ ....|..+..+.+|++|++.+ +. +..+|..++.++.|+.|++.-|.+..+|.
T Consensus 30 f~~s~ITrLtLSHNK------l~~vppnia~l~nlevln~~n------nq-ie~lp~~issl~klr~lnvgmnrl~~lpr 96 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK------LTVVPPNIAELKNLEVLNLSN------NQ-IEELPTSISSLPKLRILNVGMNRLNILPR 96 (264)
T ss_pred cchhhhhhhhcccCc------eeecCCcHHHhhhhhhhhccc------ch-hhhcChhhhhchhhhheecchhhhhcCcc
Confidence 455556666666654 223333355555566665555 44 55555555555556666555555555555
Q ss_pred hHhhccCCcEeecCCCCcc-cccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccC
Q 044264 174 TLCELYNLQLLNVESCQDL-KELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~-~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
.++.++.|+.||+++|+.. ..+|..+-.|..|+.|.++.|. ..-+|..++++++|+.|.+.+|... .++.+++.++.
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 5555555666655555422 1255555555555555555554 3445555555555555555444332 23333444444
Q ss_pred cceeeecc
Q 044264 253 LIDLLLYF 260 (439)
Q Consensus 253 L~~L~l~~ 260 (439)
|++|++.+
T Consensus 175 lrelhiqg 182 (264)
T KOG0617|consen 175 LRELHIQG 182 (264)
T ss_pred HHHHhccc
Confidence 44444433
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=8.6e-14 Score=139.86 Aligned_cols=174 Identities=22% Similarity=0.184 Sum_probs=76.4
Q ss_pred ccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccccee
Q 044264 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFV 236 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (439)
+|+.|++++|.++.+|.. +++|+.|++++|. +..+|.. ..+|+.|.+.+|. +..+|.. ..+|+.|++++
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~ 351 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSD 351 (788)
T ss_pred hcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCc-ccccccc---ccccceEecCC
Confidence 344555555555555432 2445555555554 3344331 1234444454444 2333321 13455555555
Q ss_pred eccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecC
Q 044264 237 VGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSH 316 (439)
Q Consensus 237 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 316 (439)
|.... ++.. .++|+.|++++|. ...++. .+.+|+.|++++|.+... |.. .++|+.|++++
T Consensus 352 N~Ls~-LP~l---p~~L~~L~Ls~N~---------L~~LP~---l~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~ 411 (788)
T PRK15387 352 NQLAS-LPTL---PSELYKLWAYNNR---------LTSLPA---LPSGLKELIVSGNRLTSL-PVL---PSELKELMVSG 411 (788)
T ss_pred CccCC-CCCC---Ccccceehhhccc---------cccCcc---cccccceEEecCCcccCC-CCc---ccCCCEEEccC
Confidence 44332 1111 1244444444442 111111 123455556655555543 322 24555566665
Q ss_pred CCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 317 CINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
|.+. .+|.. +.+|+.|++++|. ++.+|.. +..+++|+.|++++++
T Consensus 412 N~Ls-sIP~l--~~~L~~L~Ls~Nq-Lt~LP~s--------------l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 412 NRLT-SLPML--PSGLLSLSVYRNQ-LTRLPES--------------LIHLSSETTVNLEGNP 456 (788)
T ss_pred CcCC-CCCcc--hhhhhhhhhccCc-ccccChH--------------HhhccCCCeEECCCCC
Confidence 5443 23321 2345555555554 3344432 3345666666666653
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.53 E-value=7.6e-15 Score=150.43 Aligned_cols=308 Identities=24% Similarity=0.259 Sum_probs=204.3
Q ss_pred CCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccc-cccccc-ccccccccceeecC
Q 044264 87 APFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGF-IKEIPK-NIEKLVHLRYLNLS 164 (439)
Q Consensus 87 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~-~~~~l~~L~~L~L~ 164 (439)
...|.. ......|.+.+.++. ...++.. ..++.|++|-+.+ +.. ...++. .|..++.|++|||+
T Consensus 514 ~~~~~~-~~~~~~rr~s~~~~~------~~~~~~~-~~~~~L~tLll~~------n~~~l~~is~~ff~~m~~LrVLDLs 579 (889)
T KOG4658|consen 514 SEIPQV-KSWNSVRRMSLMNNK------IEHIAGS-SENPKLRTLLLQR------NSDWLLEISGEFFRSLPLLRVLDLS 579 (889)
T ss_pred cccccc-cchhheeEEEEeccc------hhhccCC-CCCCccceEEEee------cchhhhhcCHHHHhhCcceEEEECC
Confidence 334433 455778899988876 3333332 3556899998887 541 333433 37789999999999
Q ss_pred CCC-CccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeec--ccc
Q 044264 165 RLK-IEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVG--RGV 241 (439)
Q Consensus 165 ~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~ 241 (439)
+|. +..+|..|+.+.+|++|+++++. +..+|.++++|..|.+|++..+.....+|..+..+++|++|.+.... .+.
T Consensus 580 ~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~ 658 (889)
T KOG4658|consen 580 GNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK 658 (889)
T ss_pred CCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccch
Confidence 988 89999999999999999999999 88999999999999999999988766676666779999999987653 333
Q ss_pred ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCcc----EEEEeeccCCccCCchhhcccCccEEeecCC
Q 044264 242 ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLK----HLGIHQYRGNNVHPHWMMSLTDLRILTLSHC 317 (439)
Q Consensus 242 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~ 317 (439)
.....+..+++|+.+.+.... . .+...+..+..|. .+.+.++..... +..+..+.+|+.|.+.+|
T Consensus 659 ~~l~el~~Le~L~~ls~~~~s---------~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~-~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 659 LLLKELENLEHLENLSITISS---------V-LLLEDLLGMTRLRSLLQSLSIEGCSKRTL-ISSLGSLGNLEELSILDC 727 (889)
T ss_pred hhHHhhhcccchhhheeecch---------h-HhHhhhhhhHHHHHHhHhhhhccccccee-ecccccccCcceEEEEcC
Confidence 455566777777777775542 1 2222223333332 333333333333 566778899999999998
Q ss_pred CCCCcCC----C--CCC-cCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCc
Q 044264 318 INCEHLP----P--LGK-LPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTI 390 (439)
Q Consensus 318 ~~~~~~~----~--~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 390 (439)
...+... . ... ++++..+.+..|........ ....|+|+.|++..|..++++......
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~---------------~~f~~~L~~l~l~~~~~~e~~i~~~k~ 792 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW---------------LLFAPHLTSLSLVSCRLLEDIIPKLKA 792 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccccccch---------------hhccCcccEEEEecccccccCCCHHHH
Confidence 8754221 1 222 55677777777765554322 345789999999999877765522110
Q ss_pred ------ccccCccccee-eecccccccCCCCCCCCCCCccEEEEcCCcchhh
Q 044264 391 ------KGEIMPRLSSL-CIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQK 435 (439)
Q Consensus 391 ------~~~~~p~L~~L-~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~~l~~ 435 (439)
....|+++..+ .+.+.+.+..+-..=..++.|+.+.+..||++.+
T Consensus 793 ~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~ 844 (889)
T KOG4658|consen 793 LLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGK 844 (889)
T ss_pred hhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCccccc
Confidence 11345555555 3444444443311111244599999999988764
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=1.2e-15 Score=142.51 Aligned_cols=94 Identities=21% Similarity=0.167 Sum_probs=59.3
Q ss_pred hhhhHhhhcCCceeEEeCCccccccccccc----cccccccccccccceeecCCCCCcc-------CChhHhhccCCcEe
Q 044264 116 EVLPQLFDELTCLRALDFAMFQMWSWNGFI----KEIPKNIEKLVHLRYLNLSRLKIEK-------LPETLCELYNLQLL 184 (439)
Q Consensus 116 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~l~~L~~L~L~~~~~~~-------lp~~i~~l~~L~~L 184 (439)
......+..+.+|+.|++++ +.+. ..++..+...++|+.|+++++.+.. ++..+.++++|+.|
T Consensus 13 ~~~~~~~~~l~~L~~l~l~~------~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 13 ERATELLPKLLCLQVLRLEG------NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred cchHHHHHHHhhccEEeecC------CCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEE
Confidence 34445566677788888887 5421 2345556667778888887776542 23455667778888
Q ss_pred ecCCCCcccccchhhhhccc---cceeeccCccc
Q 044264 185 NVESCQDLKELPQGFGKLIN---LMYLLNRGTES 215 (439)
Q Consensus 185 ~l~~~~~~~~l~~~i~~l~~---L~~L~l~~~~~ 215 (439)
++++|......+..+..+.+ |++|++++|..
T Consensus 87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred EccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 88777744444445555554 77777777654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=4.2e-14 Score=126.26 Aligned_cols=145 Identities=22% Similarity=0.289 Sum_probs=88.9
Q ss_pred EEEeeCCCCCccccc-cCCceeEEEEEcCCCCCcCc-ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCC
Q 044264 57 FTVEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFPI-SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFA 134 (439)
Q Consensus 57 ~~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 134 (439)
..+++.+.....++. .+.....+.+..+.+..+|+ +|..+++||.|++++|. +..+-|..|..++.|-.|-+.
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-----Is~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-----ISFIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccc-----hhhcChHhhhhhHhhhHHHhh
Confidence 344444545444444 45556666677777777754 56677777777777776 677777777777777666555
Q ss_pred cccccccccccccccc-ccccccccceeecCCCCCccCC-hhHhhccCCcEeecCCCCcccccch-hhhhccccceeecc
Q 044264 135 MFQMWSWNGFIKEIPK-NIEKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNR 211 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~ 211 (439)
+ ++-+..+|+ .|..+..|+.|.+.-|++.-++ +.+..+++|..|.+.+|. .+.++. .+..+..++++.+.
T Consensus 124 g------~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 124 G------NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred c------CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhh
Confidence 5 333555554 3566777777777777766444 356666777777776665 444444 44555555555444
Q ss_pred Cc
Q 044264 212 GT 213 (439)
Q Consensus 212 ~~ 213 (439)
.+
T Consensus 197 ~n 198 (498)
T KOG4237|consen 197 QN 198 (498)
T ss_pred cC
Confidence 33
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=1.8e-14 Score=134.50 Aligned_cols=242 Identities=19% Similarity=0.102 Sum_probs=129.8
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCc-cCCh
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-KLPE 173 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~ 173 (439)
.++.++.+.+.++...... ...++..+...+.|+.|+++++.+..-......++..+..+++|+.|++++|.+. ..+.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~-~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEA-AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHH-HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 3445666666666511000 1224444556666777777662210000001223344555667777777776654 3334
Q ss_pred hHhhccC---CcEeecCCCCccc----ccchhhhhc-cccceeeccCccccc----cCCcccccCcccccccceeecccc
Q 044264 174 TLCELYN---LQLLNVESCQDLK----ELPQGFGKL-INLMYLLNRGTESLR----YLPAGIERLTSLRRVEKFVVGRGV 241 (439)
Q Consensus 174 ~i~~l~~---L~~L~l~~~~~~~----~l~~~i~~l-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~ 241 (439)
.+..+.. |++|++++|.... .+...+..+ ++|+.|++++|.... .++..+..+++|++|++..|...+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 4444444 7777777665321 122334455 667777777766431 122334555667777776665543
Q ss_pred c----cccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhh-----cccCccEE
Q 044264 242 A----RSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM-----SLTDLRIL 312 (439)
Q Consensus 242 ~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~-----~~~~L~~L 312 (439)
. +...+..+++|+.|+++++.... .....+...+..+++|++|++++|.........+. ..+.|++|
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~----~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTD----EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccCh----HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence 2 22334455677777777664221 02234455666778888888888766541112222 13678888
Q ss_pred eecCCCCCCc----CC-CCCCcCCcCeeeecccc
Q 044264 313 TLSHCINCEH----LP-PLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 313 ~l~~~~~~~~----~~-~~~~l~~L~~L~l~~~~ 341 (439)
++++|.+... +. .+..+++|+.+++++|.
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 8888766421 11 14455788888888877
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=1.2e-14 Score=129.75 Aligned_cols=239 Identities=19% Similarity=0.146 Sum_probs=162.1
Q ss_pred EEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccce
Q 044264 81 VKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRY 160 (439)
Q Consensus 81 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 160 (439)
..+.+..++|..+. +....+.+..|. +....+..|+.+++||.|+|++ |.+...-|+.|+.++.|-.
T Consensus 53 Cr~~GL~eVP~~LP--~~tveirLdqN~-----I~~iP~~aF~~l~~LRrLdLS~------N~Is~I~p~AF~GL~~l~~ 119 (498)
T KOG4237|consen 53 CRGKGLTEVPANLP--PETVEIRLDQNQ-----ISSIPPGAFKTLHRLRRLDLSK------NNISFIAPDAFKGLASLLS 119 (498)
T ss_pred ccCCCcccCcccCC--CcceEEEeccCC-----cccCChhhccchhhhceecccc------cchhhcChHhhhhhHhhhH
Confidence 34455577887654 467788999987 7888889999999999999999 8855566888999999888
Q ss_pred eecCC-CCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCc-ccccCcccccccceee
Q 044264 161 LNLSR-LKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPA-GIERLTSLRRVEKFVV 237 (439)
Q Consensus 161 L~L~~-~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~ 237 (439)
|-+.+ |+|+.+|. .+.++..|+.|.+..|+........+..|++|..|.+..|.. ..++. .+..+.+++.+.+..+
T Consensus 120 Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 120 LVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcC
Confidence 88777 77999995 688999999999999884444556789999999999988863 44444 4666777777776554
Q ss_pred cccc--------------------------------------------------------------ccccccccccCcce
Q 044264 238 GRGV--------------------------------------------------------------ARSSELENKKNLID 255 (439)
Q Consensus 238 ~~~~--------------------------------------------------------------~~~~~l~~l~~L~~ 255 (439)
.... .....|..+++|++
T Consensus 199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK 278 (498)
T ss_pred ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence 4211 01122555666666
Q ss_pred eeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCe
Q 044264 256 LLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQ 334 (439)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~ 334 (439)
|.+++|.. ...-..++.....+++|.+..|.+..+-...+..+..|+.|++.+|.++...|. +..+.+|.+
T Consensus 279 lnlsnN~i--------~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 279 LNLSNNKI--------TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred eccCCCcc--------chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 66666631 111234455555566666665555443122344566666666666666555554 566666666
Q ss_pred eeecccc
Q 044264 335 LYFYSMG 341 (439)
Q Consensus 335 L~l~~~~ 341 (439)
|++-.|+
T Consensus 351 l~l~~Np 357 (498)
T KOG4237|consen 351 LNLLSNP 357 (498)
T ss_pred eehccCc
Confidence 6665544
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=2e-11 Score=107.90 Aligned_cols=248 Identities=18% Similarity=0.134 Sum_probs=139.0
Q ss_pred hhHhhhcCCceeEEeCCccccccccccc----cccccccccccccceeecCCCCCc----cCChhH-------hhccCCc
Q 044264 118 LPQLFDELTCLRALDFAMFQMWSWNGFI----KEIPKNIEKLVHLRYLNLSRLKIE----KLPETL-------CELYNLQ 182 (439)
Q Consensus 118 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~l~~L~~L~L~~~~~~----~lp~~i-------~~l~~L~ 182 (439)
+-.....+..+..+++++ |.+- ..+...+.+.++|+..++++-..+ .+|+.+ -.+++|+
T Consensus 22 v~~~~~~~~s~~~l~lsg------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSG------NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HHHHhcccCceEEEeccC------CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 334455667788888887 6532 224445566667777777665422 344322 2334555
Q ss_pred EeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccc-------------ccccccc
Q 044264 183 LLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVA-------------RSSELEN 249 (439)
Q Consensus 183 ~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------~~~~l~~ 249 (439)
+|+||+|-+-...+..+. .-+..+.+|++|.+.+|..+.. .....+.
T Consensus 96 ~ldLSDNA~G~~g~~~l~--------------------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~ 155 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLE--------------------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAAS 155 (382)
T ss_pred EeeccccccCccchHHHH--------------------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCC
Confidence 555555542222221110 1123344455555544443321 1123445
Q ss_pred ccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCcc----CCchhhcccCccEEeecCCCCCCcCC-
Q 044264 250 KKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV----HPHWMMSLTDLRILTLSHCINCEHLP- 324 (439)
Q Consensus 250 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~~~~~- 324 (439)
-+.|+++....|.... .....+...+...+.|+.+.+..|.+..- +...+..|++|+.|+|.+|.+...-.
T Consensus 156 ~~~Lrv~i~~rNrlen----~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLEN----GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred CcceEEEEeecccccc----ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 5678888887774211 03355566777788999999998877641 12234589999999999988765422
Q ss_pred ----CCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCC----CcccccCc
Q 044264 325 ----PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGD----TIKGEIMP 396 (439)
Q Consensus 325 ----~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~----~~~~~~~p 396 (439)
.++.+++|+.|++++|. ++.-+..-+... -....|+|+.|.+.++. +.... .......|
T Consensus 232 ~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a--------l~~~~p~L~vl~l~gNe----It~da~~~la~~~~ek~ 298 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA--------LKESAPSLEVLELAGNE----ITRDAALALAACMAEKP 298 (382)
T ss_pred HHHHHhcccchheeecccccc-cccccHHHHHHH--------HhccCCCCceeccCcch----hHHHHHHHHHHHHhcch
Confidence 26678889999999887 333222111000 02347888888887763 21110 00112468
Q ss_pred ccceeeeccccc
Q 044264 397 RLSSLCIARCPT 408 (439)
Q Consensus 397 ~L~~L~i~~c~~ 408 (439)
.|++|.+.+|..
T Consensus 299 dL~kLnLngN~l 310 (382)
T KOG1909|consen 299 DLEKLNLNGNRL 310 (382)
T ss_pred hhHHhcCCcccc
Confidence 888888888843
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=9.5e-12 Score=116.44 Aligned_cols=195 Identities=25% Similarity=0.295 Sum_probs=144.3
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChh
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET 174 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~ 174 (439)
.+..-...+++.|. ...+|..+..|..|..|.|.. |. +..+|..++++..|.+|+|+.|++..+|..
T Consensus 73 ~ltdt~~aDlsrNR------~~elp~~~~~f~~Le~liLy~------n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~ 139 (722)
T KOG0532|consen 73 DLTDTVFADLSRNR------FSELPEEACAFVSLESLILYH------NC-IRTIPEAICNLEALTFLDLSSNQLSHLPDG 139 (722)
T ss_pred cccchhhhhccccc------cccCchHHHHHHHHHHHHHHh------cc-ceecchhhhhhhHHHHhhhccchhhcCChh
Confidence 34445566677765 345566677777788888877 66 667777788888888888888888888888
Q ss_pred HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcc
Q 044264 175 LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLI 254 (439)
Q Consensus 175 i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 254 (439)
++.|+ |+.|.+++|+ ++.+|..++.+.+|..|+.+.|. +..+|..++.+.+|+.|.+..|... .++.++..+ .|.
T Consensus 140 lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi 214 (722)
T KOG0532|consen 140 LCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLI 214 (722)
T ss_pred hhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-cee
Confidence 87765 7888888777 77888888877888888888777 4667777888888888887776654 455556633 577
Q ss_pred eeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhh---cccCccEEeecCC
Q 044264 255 DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM---SLTDLRILTLSHC 317 (439)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~---~~~~L~~L~l~~~ 317 (439)
.|++++| .+..+|-.+..+..|++|.|.+|....- |..+. ...-.|+|+...|
T Consensus 215 ~lDfScN---------kis~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 215 RLDFSCN---------KISYLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecccC---------ceeecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence 8888888 5667788888888999999988888874 44443 4455677777777
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=4.8e-10 Score=107.82 Aligned_cols=183 Identities=35% Similarity=0.392 Sum_probs=139.1
Q ss_pred hhcCCceeEEeCCcccccccccccccccccccccc-ccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV-HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFG 200 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~ 200 (439)
+..++.+..|++.+ +. +..+++....+. +|+.|++++|.+..+|..+..+++|+.|+++.|. +..+|...+
T Consensus 112 ~~~~~~l~~L~l~~------n~-i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~ 183 (394)
T COG4886 112 LLELTNLTSLDLDN------NN-ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLS 183 (394)
T ss_pred hhcccceeEEecCC------cc-cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhh
Confidence 45567899999988 66 777777777774 8999999999999998888899999999999998 888888777
Q ss_pred hccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCC
Q 044264 201 KLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQ 280 (439)
Q Consensus 201 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 280 (439)
.+++|+.|+++++. +..+|..++....|+++.+..+.. ...+..+..+.++..+.+..+ ....++..+.
T Consensus 184 ~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n---------~~~~~~~~~~ 252 (394)
T COG4886 184 NLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNN---------KLEDLPESIG 252 (394)
T ss_pred hhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCc---------eeeeccchhc
Confidence 88999999999887 577777666777788888887742 234445666777777776665 2233356667
Q ss_pred CCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC
Q 044264 281 PPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP 325 (439)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 325 (439)
.+++++.|+++++.+..+ +. +....+++.|+++++......+.
T Consensus 253 ~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 253 NLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccceecccccccccc-cc-ccccCccCEEeccCccccccchh
Confidence 777888888888888875 33 77888888888888776655543
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.01 E-value=3.2e-11 Score=108.89 Aligned_cols=265 Identities=17% Similarity=0.143 Sum_probs=132.1
Q ss_pred ccccccceeecCCCC-Ccc--CChhHhhccCCcEeecCCCCccccc--chhhhhccccceeeccCcccccc--CCccccc
Q 044264 153 EKLVHLRYLNLSRLK-IEK--LPETLCELYNLQLLNVESCQDLKEL--PQGFGKLINLMYLLNRGTESLRY--LPAGIER 225 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~-~~~--lp~~i~~l~~L~~L~l~~~~~~~~l--~~~i~~l~~L~~L~l~~~~~~~~--~~~~~~~ 225 (439)
..++++++|.+.+|. ++. +-..-..+.+|++|++..|..++.. ......+++|++++++.|..+.. +......
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 345555555555555 221 1112234555666666555443321 11223555666666666554332 1111223
Q ss_pred Ccccccccceeecccc--ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCC--c
Q 044264 226 LTSLRRVEKFVVGRGV--ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHP--H 301 (439)
Q Consensus 226 l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~--~ 301 (439)
+..++.+...+|.... .+...=+.+..+.++++..+... ....+...-..+..|+.|..+++......+ .
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l------TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a 314 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL------TDEDLWLIACGCHALQVLCYSSCTDITDEVLWA 314 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc------cchHHHHHhhhhhHhhhhcccCCCCCchHHHHH
Confidence 3444444444332211 00111112223333333333111 112233333446667777777665543101 1
Q ss_pred hhhcccCccEEeecCCCCCCcCCC---CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCC
Q 044264 302 WMMSLTDLRILTLSHCINCEHLPP---LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDM 378 (439)
Q Consensus 302 ~~~~~~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 378 (439)
-..++++|+.|.+..|...++... -.+++.|+.+++.+|..+... .+... ...+|.|++|.+++|
T Consensus 315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl----------s~~C~~lr~lslshc 382 (483)
T KOG4341|consen 315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL----------SRNCPRLRVLSLSHC 382 (483)
T ss_pred HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh----------ccCCchhccCChhhh
Confidence 122667777777777765443321 345677777777776533321 11111 345788888888888
Q ss_pred CCccccccCC-CcccccCcccceeeecccccccC-CCCCCCCCCCccEEEEcCCcchhh
Q 044264 379 YVLKEWDYGD-TIKGEIMPRLSSLCIARCPTLRA-LPDHLLQTTTLQKLEIWGCPNLQK 435 (439)
Q Consensus 379 ~~l~~~~~~~-~~~~~~~p~L~~L~i~~c~~l~~-l~~~l~~~~~L~~L~i~~c~~l~~ 435 (439)
..+++-..-. .....+...|+.+.+++||.+++ .-..+..+++|+.+++.+|..+.+
T Consensus 383 e~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 383 ELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 7665542111 11124567788888888887754 345667788888888888877654
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.1e-10 Score=104.35 Aligned_cols=193 Identities=19% Similarity=0.139 Sum_probs=88.0
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChh--HhhccCCcEeecCCCCcccc-cchh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET--LCELYNLQLLNVESCQDLKE-LPQG 198 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~-l~~~ 198 (439)
...|++++.|+|+++..+.|.. +......+++|+.|+++.|.+.....+ -..+++|+.|.++.|..... +...
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~----v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~ 217 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFP----VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWI 217 (505)
T ss_pred hhhCCcceeecchhhhHHhHHH----HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHH
Confidence 4455555555555544443333 112233455555555555553321111 11345555555555552211 2222
Q ss_pred hhhccccceeeccCccccccCCcccccCcccccccceeecccc-ccccccccccCcceeeecccCCcchhccCChHHHHH
Q 044264 199 FGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLE 277 (439)
Q Consensus 199 i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 277 (439)
...+++|+.|.+..|...........-+..|+.|++++|...+ .....++.++.|+.|.++.+.... .. ....+...
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s-i~-~~d~~s~~ 295 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS-IA-EPDVESLD 295 (505)
T ss_pred HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcch-hc-CCCccchh
Confidence 3445555555555553211111112234455555555554332 122334455555555555442110 00 00111122
Q ss_pred hCCCCCCccEEEEeeccCCccC-CchhhcccCccEEeecCCCCC
Q 044264 278 ALQPPPNLKHLGIHQYRGNNVH-PHWMMSLTDLRILTLSHCINC 320 (439)
Q Consensus 278 ~l~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~ 320 (439)
....+++|++|.+..|.+..+- ...+..+++|+.|.+..+.+.
T Consensus 296 kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 2455777888888877774430 233446677777777766554
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=1.1e-10 Score=101.17 Aligned_cols=205 Identities=17% Similarity=0.122 Sum_probs=128.5
Q ss_pred CChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccce-eecccccccccccc
Q 044264 171 LPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKF-VVGRGVARSSELEN 249 (439)
Q Consensus 171 lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~-~~~~~~~~~~~l~~ 249 (439)
+|-.+.-+.+|..+.++.|. ...+......=+.|+++.+..... ...|. +--...+...... .....+.....+..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~-~~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTI-QDVPS-LLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeecccc-ccccc-ccchhhhcCccCCCCCccCCceEEecch
Confidence 34445566777777777776 433333233445777777765432 11111 1111122211111 11122344455667
Q ss_pred ccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCc
Q 044264 250 KKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKL 329 (439)
Q Consensus 250 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 329 (439)
++.|+++++++| .+..+...+.-.|.++.|++++|.+.. ...++.+++|+.||+++|...+...+-..+
T Consensus 283 Wq~LtelDLS~N---------~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 283 WQELTELDLSGN---------LITQIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred Hhhhhhcccccc---------chhhhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHhhhhhHhhh
Confidence 788999999998 667777778888999999999999888 456888999999999998766544444456
Q ss_pred CCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeeccccc
Q 044264 330 PSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPT 408 (439)
Q Consensus 330 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~ 408 (439)
-+++.|.+++|. ++.++. +..+-+|..|+++++ +++.+. ....++.+|.|+.+.+.++|.
T Consensus 352 GNIKtL~La~N~-iE~LSG---------------L~KLYSLvnLDl~~N-~Ie~ld--eV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 352 GNIKTLKLAQNK-IETLSG---------------LRKLYSLVNLDLSSN-QIEELD--EVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred cCEeeeehhhhh-Hhhhhh---------------hHhhhhheecccccc-chhhHH--HhcccccccHHHHHhhcCCCc
Confidence 788888888887 544332 556667778887764 233322 222346788888888888863
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.99 E-value=4.7e-11 Score=107.85 Aligned_cols=259 Identities=16% Similarity=0.126 Sum_probs=183.7
Q ss_pred cccceeecCCCC---CccCChhHhhccCCcEeecCCCCcccc--cchhhhhccccceeeccCccccccCC-c-ccccCcc
Q 044264 156 VHLRYLNLSRLK---IEKLPETLCELYNLQLLNVESCQDLKE--LPQGFGKLINLMYLLNRGTESLRYLP-A-GIERLTS 228 (439)
Q Consensus 156 ~~L~~L~L~~~~---~~~lp~~i~~l~~L~~L~l~~~~~~~~--l~~~i~~l~~L~~L~l~~~~~~~~~~-~-~~~~l~~ 228 (439)
-.|+.|.++++. ...+-....+++++++|.+.+|..++. +-..-..+++|++|++..|..++... + ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 358899999988 335555678899999999999986654 22234578999999999987655432 2 2356999
Q ss_pred cccccceeecccc--ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhh--
Q 044264 229 LRRVEKFVVGRGV--ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM-- 304 (439)
Q Consensus 229 L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~-- 304 (439)
|+++.++.|.... .+..-..+++.++++...++... ..+.+...-..++-+.++++.+|...+. ..++
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~------~le~l~~~~~~~~~i~~lnl~~c~~lTD--~~~~~i 289 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL------ELEALLKAAAYCLEILKLNLQHCNQLTD--EDLWLI 289 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc------cHHHHHHHhccChHhhccchhhhccccc--hHHHHH
Confidence 9999999886533 23334567777888877655322 2344444455667778888878766552 2222
Q ss_pred --cccCccEEeecCCCCCCcCCC---CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 305 --SLTDLRILTLSHCINCEHLPP---LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 305 --~~~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
.+..|+.|+.++|...++.+. .+++++|+.|-+.+|..+.......++ ..++.|+.+++..|.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~------------rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG------------RNCPHLERLDLEECG 357 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh------------cCChhhhhhcccccc
Confidence 788999999999988666542 567899999999999987766555443 348899999999886
Q ss_pred CccccccCCCcccccCcccceeeecccccccCC-----CCCCCCCCCccEEEEcCCcchhhh
Q 044264 380 VLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL-----PDHLLQTTTLQKLEIWGCPNLQKQ 436 (439)
Q Consensus 380 ~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l-----~~~l~~~~~L~~L~i~~c~~l~~~ 436 (439)
...+-... ......|.|+++.+++|..++.- ...-.+...|+.+++.+||.+++.
T Consensus 358 ~~~d~tL~--sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 358 LITDGTLA--SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred eehhhhHh--hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 55443221 12357899999999999776653 223345778999999999988764
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7.9e-11 Score=107.02 Aligned_cols=205 Identities=17% Similarity=0.078 Sum_probs=133.3
Q ss_pred hcCCceeEEeCCccccccccccccccc--cccccccccceeecCCCCCcc---CChhHhhccCCcEeecCCCCcccccch
Q 044264 123 DELTCLRALDFAMFQMWSWNGFIKEIP--KNIEKLVHLRYLNLSRLKIEK---LPETLCELYNLQLLNVESCQDLKELPQ 197 (439)
Q Consensus 123 ~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~~l~~ 197 (439)
+++.+||...|++ +. +...+ .....|++++.|||++|-+.. +...+..+++|+.|+++.|....-...
T Consensus 118 sn~kkL~~IsLdn------~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDN------YR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeecC------cc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 5678899999987 55 44444 356789999999999988653 445567889999999998873221111
Q ss_pred -hhhhccccceeeccCcccccc-CCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHH
Q 044264 198 -GFGKLINLMYLLNRGTESLRY-LPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEV 275 (439)
Q Consensus 198 -~i~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 275 (439)
.-..+++|+.|.++.|..... +..-+..+|+|+.|++..|...........-+..|+.|++++|.... ...
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-------~~~ 263 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-------FDQ 263 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-------ccc
Confidence 123677888999988875432 22234568889999988875332333334455678888888774211 122
Q ss_pred HHhCCCCCCccEEEEeeccCCcc-CCch-----hhcccCccEEeecCCCCC--CcCCCCCCcCCcCeeeecccc
Q 044264 276 LEALQPPPNLKHLGIHQYRGNNV-HPHW-----MMSLTDLRILTLSHCINC--EHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 276 ~~~l~~~~~L~~L~l~~~~~~~~-l~~~-----~~~~~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~ 341 (439)
....+.++.|+.|.++.+.+... .|.. ...+++|+.|++..|... ..+-.+..+++|+.|.+..++
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 24566788888888887776552 1222 236788888888888662 223334456677777765555
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=1.8e-10 Score=99.83 Aligned_cols=226 Identities=17% Similarity=0.081 Sum_probs=121.0
Q ss_pred ccCCCCCeeEEEecCCCCCh---hhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCC
Q 044264 92 SFCSVKRLRSLLIDDNGDDE---FWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKI 168 (439)
Q Consensus 92 ~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 168 (439)
.+.-+.+|..|.+.+...+. +.+...+|-.+.-+++|+.+.+++ +. ...+.+....-+.|+++.+.+..+
T Consensus 177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~------~~-~~~i~~~~~~kptl~t~~v~~s~~ 249 (490)
T KOG1259|consen 177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSA------LS-TENIVDIELLKPTLQTICVHNTTI 249 (490)
T ss_pred HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeec------cc-hhheeceeecCchhheeeeecccc
Confidence 33445667777776654321 223333444455566777777766 33 333333333345666666665554
Q ss_pred ccCChhHhhccCCcEeecCCCC---cccccchhhhhccccceeeccCccccccCCcccccCcccccccceeecccccccc
Q 044264 169 EKLPETLCELYNLQLLNVESCQ---DLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSS 245 (439)
Q Consensus 169 ~~lp~~i~~l~~L~~L~l~~~~---~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 245 (439)
...|.-+. ...+ -|.+... ....+-..+..-..|+++++++|. +..+.+.+.-+|.++.|+++.|... ...
T Consensus 250 ~~~~~l~p-e~~~--~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~--~v~ 323 (490)
T KOG1259|consen 250 QDVPSLLP-ETIL--ADPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIR--TVQ 323 (490)
T ss_pred cccccccc-hhhh--cCccCCCCCccCCceEEecchHhhhhhccccccc-hhhhhhhhhhccceeEEecccccee--eeh
Confidence 43321110 0000 1111100 000111112223356666666665 3444445555666666666665543 222
Q ss_pred ccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCC--CcC
Q 044264 246 ELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINC--EHL 323 (439)
Q Consensus 246 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~~ 323 (439)
.+..+++|+.|++++| ....+..+-..+.|+++|.+.+|.+.. .+++..+-+|..||+++|.+. ...
T Consensus 324 nLa~L~~L~~LDLS~N---------~Ls~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV 392 (490)
T KOG1259|consen 324 NLAELPQLQLLDLSGN---------LLAECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEV 392 (490)
T ss_pred hhhhcccceEeecccc---------hhHhhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHh
Confidence 3566667777777766 334444444556677788888777766 566777777888888877653 334
Q ss_pred CCCCCcCCcCeeeecccc
Q 044264 324 PPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 324 ~~~~~l~~L~~L~l~~~~ 341 (439)
..++++|-|+.+.+.+|+
T Consensus 393 ~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cccccccHHHHHhhcCCC
Confidence 457778888888888777
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.5e-09 Score=89.90 Aligned_cols=125 Identities=26% Similarity=0.324 Sum_probs=43.5
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhh-cCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFD-ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE 173 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~ 173 (439)
+...++.|++.++. +.. +.. ++ .+.+|+.|++++ |. +..+. .+..+++|++|++++|.++.+.+
T Consensus 17 n~~~~~~L~L~~n~-----I~~-Ie~-L~~~l~~L~~L~Ls~------N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-----IST-IEN-LGATLDKLEVLDLSN------NQ-ITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp -------------------------S---TT-TT--EEE-TT------S---S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccccccccc-----ccc-ccc-hhhhhcCCCEEECCC------CC-Ccccc-CccChhhhhhcccCCCCCCcccc
Confidence 44567778888776 222 222 33 467788888887 66 44453 36677888888888888877765
Q ss_pred hH-hhccCCcEeecCCCCcccccc--hhhhhccccceeeccCccccccCC----cccccCccccccccee
Q 044264 174 TL-CELYNLQLLNVESCQDLKELP--QGFGKLINLMYLLNRGTESLRYLP----AGIERLTSLRRVEKFV 236 (439)
Q Consensus 174 ~i-~~l~~L~~L~l~~~~~~~~l~--~~i~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~ 236 (439)
.+ ..+++|+.|.+++|. +..+. ..++.+++|++|++.+|+.... + ..+..+|+|+.|+...
T Consensus 82 ~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred chHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence 54 357888888888776 44332 2356777888888887775332 2 1255666776666543
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=1.1e-10 Score=109.46 Aligned_cols=193 Identities=25% Similarity=0.266 Sum_probs=157.0
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcccc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINL 205 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L 205 (439)
..-...+++. |. ...+|..+..+..|+.+.++.|.+..+|..++++..|.+|+++.|. +..+|..++.|+ |
T Consensus 75 tdt~~aDlsr------NR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-L 145 (722)
T KOG0532|consen 75 TDTVFADLSR------NR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-L 145 (722)
T ss_pred cchhhhhccc------cc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-c
Confidence 3344567777 77 6778888999999999999999999999999999999999999998 888998887665 7
Q ss_pred ceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCc
Q 044264 206 MYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNL 285 (439)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 285 (439)
+.|-+++|. ++.+|..++....|..|+.+.|... ..+..++.+.+|+.|.+..| ....++..+. .-.|
T Consensus 146 kvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn---------~l~~lp~El~-~LpL 213 (722)
T KOG0532|consen 146 KVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRN---------HLEDLPEELC-SLPL 213 (722)
T ss_pred eeEEEecCc-cccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhh---------hhhhCCHHHh-CCce
Confidence 888888777 6889999999999999998877654 67778999999999999888 5566777777 4578
Q ss_pred cEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC---CCCcCCcCeeeeccc
Q 044264 286 KHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP---LGKLPSLEQLYFYSM 340 (439)
Q Consensus 286 ~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~ 340 (439)
..|+++.|.+..+ |..|..+..|++|-|.+|....-... .+...-.++|+...|
T Consensus 214 i~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeecccCceeec-chhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 9999999999887 99999999999999999886532111 344455666766666
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=1.8e-09 Score=103.78 Aligned_cols=185 Identities=25% Similarity=0.297 Sum_probs=147.9
Q ss_pred CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCC-ceeEEeCCccccccccccccccccccccccccceeecCCCCC
Q 044264 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELT-CLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKI 168 (439)
Q Consensus 90 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 168 (439)
...+...+.++.+.+.++. ...++....... +|+.|++++ +. +..+|..+..+++|+.|++++|.+
T Consensus 109 ~~~~~~~~~l~~L~l~~n~------i~~i~~~~~~~~~nL~~L~l~~------N~-i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 109 ISELLELTNLTSLDLDNNN------ITDIPPLIGLLKSNLKELDLSD------NK-IESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred chhhhcccceeEEecCCcc------cccCccccccchhhcccccccc------cc-hhhhhhhhhccccccccccCCchh
Confidence 3344556789999999987 334444455664 999999999 77 777777789999999999999999
Q ss_pred ccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccc
Q 044264 169 EKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELE 248 (439)
Q Consensus 169 ~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 248 (439)
..+|...+.++.|+.|+++++. +..+|..+..+..|++|.++++. ....+..+.++.++..+.+..+... ..+..++
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~ 252 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLE-DLPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceee-eccchhc
Confidence 9999888899999999999998 88999877788889999999986 3455566888888888886665543 2356788
Q ss_pred cccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCC
Q 044264 249 NKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHP 300 (439)
Q Consensus 249 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~ 300 (439)
.+++++.|+++.+ ....+.. +....+|+.|+++++.....++
T Consensus 253 ~l~~l~~L~~s~n---------~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 253 NLSNLETLDLSNN---------QISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccceeccccc---------ccccccc-ccccCccCEEeccCccccccch
Confidence 8899999999998 3344444 8889999999999998877533
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1e-09 Score=90.79 Aligned_cols=128 Identities=24% Similarity=0.193 Sum_probs=47.0
Q ss_pred hhcCCceeEEeCCccccccccccccccccccc-cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhh-
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIE-KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGF- 199 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i- 199 (439)
+.+...++.|+|++ +. +..+. .++ .+.+|+.|++++|.++.++ .+..+++|+.|++++|. +..+...+
T Consensus 15 ~~n~~~~~~L~L~~------n~-I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRG------NQ-ISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLD 84 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHH
T ss_pred cccccccccccccc------cc-ccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchH
Confidence 44566789999999 66 44443 355 5789999999999999886 57789999999999998 77776655
Q ss_pred hhccccceeeccCccccccCC--cccccCcccccccceeecccc---ccccccccccCcceeeecc
Q 044264 200 GKLINLMYLLNRGTESLRYLP--AGIERLTSLRRVEKFVVGRGV---ARSSELENKKNLIDLLLYF 260 (439)
Q Consensus 200 ~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~ 260 (439)
..+++|++|.+++|.. ..+. ..++.+++|+.|++.+|.... .....+..+|+|+.|+-..
T Consensus 85 ~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 4689999999998874 2221 335667777777776665432 1222345556666665443
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.87 E-value=7.4e-10 Score=98.08 Aligned_cols=240 Identities=18% Similarity=0.134 Sum_probs=135.2
Q ss_pred ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc-------ccccccccceeecC
Q 044264 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK-------NIEKLVHLRYLNLS 164 (439)
Q Consensus 92 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~~~l~~L~~L~L~ 164 (439)
....+..++.+++++|... ......+.+.+.+.++|+.-++++.- . .+....+|+ .+..+++|++|+||
T Consensus 25 ~~~~~~s~~~l~lsgnt~G-~EAa~~i~~~L~~~~~L~~v~~sd~f--t-GR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFG-TEAARAIAKVLASKKELREVNLSDMF--T-GRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HhcccCceEEEeccCCchh-HHHHHHHHHHHhhcccceeeehHhhh--c-CCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 3456778999999998721 11123355667788899999988611 1 121233443 34456799999999
Q ss_pred CCCCc--c---CChhHhhccCCcEeecCCCCcccccch-h-------------hhhccccceeeccCccccccCC-----
Q 044264 165 RLKIE--K---LPETLCELYNLQLLNVESCQDLKELPQ-G-------------FGKLINLMYLLNRGTESLRYLP----- 220 (439)
Q Consensus 165 ~~~~~--~---lp~~i~~l~~L~~L~l~~~~~~~~l~~-~-------------i~~l~~L~~L~l~~~~~~~~~~----- 220 (439)
+|-++ . +-..+..+..|++|.+.+|. +..... . +++-++|+++....|+. ...+
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~ga~~~A 178 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENGGATALA 178 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccccHHHHH
Confidence 99865 2 22456778999999999987 332111 1 22344667776666653 3222
Q ss_pred cccccCcccccccceeecccc----ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCC
Q 044264 221 AGIERLTSLRRVEKFVVGRGV----ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGN 296 (439)
Q Consensus 221 ~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 296 (439)
..+...+.|+.+.+..|.+.. .....+..|++|+.|++..|.... .....+...+..+++|+.|.+++|...
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~----egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL----EGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh----HHHHHHHHHhcccchheeecccccccc
Confidence 224445666666666555433 222345566666666666653211 022334455566666666666666554
Q ss_pred ccCCchh-----hcccCccEEeecCCCCCCcCC-----CCCCcCCcCeeeecccc
Q 044264 297 NVHPHWM-----MSLTDLRILTLSHCINCEHLP-----PLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 297 ~~l~~~~-----~~~~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~ 341 (439)
.-....+ ...|+|+.|.+.+|.+..+.. .+...|.|+.|++++|.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 4111111 145666666666665543211 13445666666666665
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.4e-10 Score=98.01 Aligned_cols=180 Identities=18% Similarity=0.119 Sum_probs=89.2
Q ss_pred CCcEeecCCCCccc-ccchhhhhccccceeeccCccccccCCcccccCcccccccceeecccccc--ccccccccCccee
Q 044264 180 NLQLLNVESCQDLK-ELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVAR--SSELENKKNLIDL 256 (439)
Q Consensus 180 ~L~~L~l~~~~~~~-~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L 256 (439)
.|++||+++..... .+...+..|.+|+.|.+.+++....+-..+++-.+|+.|+++.++..... .-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35555555544211 22333455555555555555543333334555555666655554432211 1224556666666
Q ss_pred eecccCCcchhccCChHHHHHhC-CCCCCccEEEEeeccCCcc---CCchhhcccCccEEeecCCCCCCcC--CCCCCcC
Q 044264 257 LLYFGHGNEERKRKKDEEVLEAL-QPPPNLKHLGIHQYRGNNV---HPHWMMSLTDLRILTLSHCINCEHL--PPLGKLP 330 (439)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~l~ 330 (439)
.++++.... +.+-..+ .--++|..|+++++.-.-. +..-...||+|..||+++|...+.- ..+.+++
T Consensus 266 NlsWc~l~~-------~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 266 NLSWCFLFT-------EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred CchHhhccc-------hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 666653211 1111111 1234666667766543221 0111226777777777776554431 1255667
Q ss_pred CcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 331 SLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 331 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
.|++|.++.|..+. |..++. +...|.|.+|++.+|-
T Consensus 339 ~L~~lSlsRCY~i~--p~~~~~-----------l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 339 YLQHLSLSRCYDII--PETLLE-----------LNSKPSLVYLDVFGCV 374 (419)
T ss_pred hheeeehhhhcCCC--hHHeee-----------eccCcceEEEEecccc
Confidence 77777777776432 222222 4556777777777664
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.2e-10 Score=100.72 Aligned_cols=180 Identities=16% Similarity=0.117 Sum_probs=124.7
Q ss_pred ccceeeccCcccccc-CCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCC
Q 044264 204 NLMYLLNRGTESLRY-LPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPP 282 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 282 (439)
.|++++++....... +..-++.|.+|+.|.+.++...+.+...+++-.+|+.|+++.+.+. ........+.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~------t~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF------TENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc------chhHHHHHHHhh
Confidence 588999987664332 2223577889999999888888888888888889999999887543 224445567788
Q ss_pred CCccEEEEeeccCCccCCch---hh-cccCccEEeecCCCCC---CcCCC-CCCcCCcCeeeeccccCeeEeCCcccccc
Q 044264 283 PNLKHLGIHQYRGNNVHPHW---MM-SLTDLRILTLSHCINC---EHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVE 354 (439)
Q Consensus 283 ~~L~~L~l~~~~~~~~l~~~---~~-~~~~L~~L~l~~~~~~---~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 354 (439)
+.|.+|+++.|.... +.. +. --++|+.|+++||... .++.. ...+|+|..|++++|..++. +.+..
T Consensus 260 s~L~~LNlsWc~l~~--~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~---~~~~~- 333 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFT--EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN---DCFQE- 333 (419)
T ss_pred hhHhhcCchHhhccc--hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc---hHHHH-
Confidence 889999998887765 221 11 3467888888887532 23333 56788999999988876654 11111
Q ss_pred CCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccc
Q 044264 355 SDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCP 407 (439)
Q Consensus 355 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~ 407 (439)
+..|+.|++|.++.|+.+..- ........|+|..|++.+|-
T Consensus 334 ---------~~kf~~L~~lSlsRCY~i~p~---~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 ---------FFKFNYLQHLSLSRCYDIIPE---TLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ---------HHhcchheeeehhhhcCCChH---HeeeeccCcceEEEEecccc
Confidence 556888999999888755322 22233577889999988884
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=1.3e-07 Score=95.48 Aligned_cols=106 Identities=24% Similarity=0.313 Sum_probs=84.1
Q ss_pred ceeEEeCCccccccccccccccccccccccccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccccchhhhhcccc
Q 044264 127 CLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINL 205 (439)
Q Consensus 127 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L 205 (439)
.++.|+|++ +.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|++++|.....+|..++++++|
T Consensus 419 ~v~~L~L~~------n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDN------QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCC------CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 377888888 7766678888888899999999998875 788888889999999999888666788888899999
Q ss_pred ceeeccCccccccCCcccccC-cccccccceeec
Q 044264 206 MYLLNRGTESLRYLPAGIERL-TSLRRVEKFVVG 238 (439)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~ 238 (439)
++|++++|.....+|..+... .++..+++.+|.
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 999998888777888776543 355556655554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.56 E-value=9.2e-09 Score=99.18 Aligned_cols=106 Identities=27% Similarity=0.278 Sum_probs=50.3
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
+..+++|..|++.+ +. +..+...+..+++|++|++++|.|+.+. .+..++.|+.|++.+|. +..+.. +..
T Consensus 91 l~~~~~l~~l~l~~------n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD------NK-IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-LES 160 (414)
T ss_pred cccccceeeeeccc------cc-hhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-Ccc
Confidence 44555555555555 44 3333332445555555555555555543 23444445555555555 333332 334
Q ss_pred ccccceeeccCccccccCCcc-cccCcccccccceeec
Q 044264 202 LINLMYLLNRGTESLRYLPAG-IERLTSLRRVEKFVVG 238 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 238 (439)
+.+|+.+++++|.. ..+... +..+.+++.+.+..+.
T Consensus 161 l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred chhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCc
Confidence 55555555555543 222111 2444455555544443
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=1.3e-07 Score=95.42 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=94.5
Q ss_pred ccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccce
Q 044264 157 HLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKF 235 (439)
Q Consensus 157 ~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 235 (439)
.++.|+|+++.+. .+|..++++++|+.|++++|.....+|..++.+++|+.|++++|.....+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999976 889999999999999999999667899999999999999999999888899999999999999999
Q ss_pred eeccccccccccccc-cCcceeeecccC
Q 044264 236 VVGRGVARSSELENK-KNLIDLLLYFGH 262 (439)
Q Consensus 236 ~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 262 (439)
.|...+..+..+... .++..+.+.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 999888888887764 467788888774
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=4.6e-07 Score=61.45 Aligned_cols=39 Identities=26% Similarity=0.455 Sum_probs=18.0
Q ss_pred ccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCC
Q 044264 151 NIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESC 189 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~ 189 (439)
.+..+++|++|++++|.++.+++ .+..+++|++|++++|
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34444445555554444444432 3344444444444444
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=3.9e-07 Score=79.43 Aligned_cols=193 Identities=16% Similarity=0.056 Sum_probs=103.5
Q ss_pred hcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhH-hhccCCcEeecCCCCcc-cccchhhh
Q 044264 123 DELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETL-CELYNLQLLNVESCQDL-KELPQGFG 200 (439)
Q Consensus 123 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~-~~l~~~i~ 200 (439)
..+..++.|+|.+|++..|.. +...+.++|.|++|+++.|.+......+ -...+|+.|-+.++... ......+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWse----I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSE----IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHhhhhhhhhcccchhccHHH----HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 456778888888866655554 3334567788888888887744222222 23567777777776632 12333455
Q ss_pred hccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCC
Q 044264 201 KLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQ 280 (439)
Q Consensus 201 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 280 (439)
.++.++.|.++.|.. +.+.+..+...+ --+.+++|+...|... ..........
T Consensus 144 ~lP~vtelHmS~N~~--------------rq~n~Dd~c~e~-------~s~~v~tlh~~~c~~~------~w~~~~~l~r 196 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSL--------------RQLNLDDNCIED-------WSTEVLTLHQLPCLEQ------LWLNKNKLSR 196 (418)
T ss_pred cchhhhhhhhccchh--------------hhhccccccccc-------cchhhhhhhcCCcHHH------HHHHHHhHHh
Confidence 666666666665531 111111111110 0012333333332100 1122233334
Q ss_pred CCCCccEEEEeeccCCcc-CCchhhcccCccEEeecCCCCCCc--CCCCCCcCCcCeeeeccccCeeEe
Q 044264 281 PPPNLKHLGIHQYRGNNV-HPHWMMSLTDLRILTLSHCINCEH--LPPLGKLPSLEQLYFYSMGSVKRV 346 (439)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~ 346 (439)
.+|++..+.+..+.+.+. --.....+|.+-.|+++.+.+... +..+.++++|..|.+++++..+.+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 577888888887765442 022334566666777776655432 233778888888888888855443
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=1.5e-07 Score=90.84 Aligned_cols=233 Identities=22% Similarity=0.208 Sum_probs=144.8
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVH 157 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 157 (439)
.+.+....+..+...+..++.+..+++.+|. +.+ +...+..+++|++|++++ |. +..+. .+..+..
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-----i~~-i~~~l~~~~~L~~L~ls~------N~-I~~i~-~l~~l~~ 141 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNK-----IEK-IENLLSSLVNLQVLDLSF------NK-ITKLE-GLSTLTL 141 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeeccccc-----hhh-cccchhhhhcchheeccc------cc-ccccc-chhhccc
Confidence 3334444444444556778899999999987 333 333367889999999998 66 55553 3677788
Q ss_pred cceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchh-hhhccccceeeccCccccccCCcccccCccccccccee
Q 044264 158 LRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFV 236 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (439)
|+.|++++|.+..+.. +..++.|+.+++++|. +..+... ...+.+++.+.+.++.... + ..+..+..+..+++..
T Consensus 142 L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~-i-~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 142 LKELNLSGNLISDISG-LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIRE-I-EGLDLLKKLVLLSLLD 217 (414)
T ss_pred hhhheeccCcchhccC-CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhc-c-cchHHHHHHHHhhccc
Confidence 9999999999887763 4448899999999988 5555543 5788899999998876422 1 2333344444444444
Q ss_pred ecccccccccccccc--CcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEee
Q 044264 237 VGRGVARSSELENKK--NLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314 (439)
Q Consensus 237 ~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l 314 (439)
+.... ...+..+. +|+.+.+..+. ....+..+..+.++..|++..+.... -..+...+.+..+..
T Consensus 218 n~i~~--~~~l~~~~~~~L~~l~l~~n~---------i~~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~ 284 (414)
T KOG0531|consen 218 NKISK--LEGLNELVMLHLRELYLSGNR---------ISRSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWL 284 (414)
T ss_pred cccee--ccCcccchhHHHHHHhcccCc---------cccccccccccccccccchhhccccc--cccccccchHHHhcc
Confidence 43321 11122222 27777777763 22222456667778888887777766 344445555555555
Q ss_pred cCCCCCCc---CC--CCCCcCCcCeeeecccc
Q 044264 315 SHCINCEH---LP--PLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 315 ~~~~~~~~---~~--~~~~l~~L~~L~l~~~~ 341 (439)
..+..... .. ..+..+.++.+.+..++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 285 NDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred CcchhcchhhhhccccccccccccccccccCc
Confidence 55544321 11 14455677777776666
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.2e-06 Score=59.38 Aligned_cols=61 Identities=36% Similarity=0.550 Sum_probs=49.6
Q ss_pred CCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCC
Q 044264 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKI 168 (439)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 168 (439)
++|+.|++.+|. +....+..|..+++|++|++++ |.+....+..|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~-----l~~i~~~~f~~l~~L~~L~l~~------N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-----LTEIPPDSFSNLPNLETLDLSN------NNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-----ESEECTTTTTTGTTESEEEETS------SSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-----CCccCHHHHcCCCCCCEeEccC------CccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999987 5666667889999999999998 774444556789999999999999864
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.21 E-value=8.4e-07 Score=89.60 Aligned_cols=157 Identities=23% Similarity=0.176 Sum_probs=87.0
Q ss_pred cccceeecCCCC-C-ccCChhHhh-ccCCcEeecCCCCcc-cccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 156 VHLRYLNLSRLK-I-EKLPETLCE-LYNLQLLNVESCQDL-KELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 156 ~~L~~L~L~~~~-~-~~lp~~i~~-l~~L~~L~l~~~~~~-~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
.+|++|+++|.. + +..|..++. +|.|+.|.+++-... .++-.-..++++|..||+++++. ..+ .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHHH
Confidence 467777777765 2 345555553 677777777764422 12333345677777777777763 333 56777777777
Q ss_pred ccceeecccc-ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCC-chhhcccCc
Q 044264 232 VEKFVVGRGV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHP-HWMMSLTDL 309 (439)
Q Consensus 232 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L 309 (439)
|.+.+-.... .....+..+++|+.|+++........ ..+....+.-..+|+|+.|+.++......+. .-+..-++|
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 7766544432 33345666777777777765322110 1223334444556777777777555443211 112244555
Q ss_pred cEEeecC
Q 044264 310 RILTLSH 316 (439)
Q Consensus 310 ~~L~l~~ 316 (439)
+.+..-+
T Consensus 278 ~~i~~~~ 284 (699)
T KOG3665|consen 278 QQIAALD 284 (699)
T ss_pred hhhhhhh
Confidence 5544443
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=1e-05 Score=75.63 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=37.4
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCC-CccCChhHhhccCCcEeecCCCCcccccch
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLK-IEKLPETLCELYNLQLLNVESCQDLKELPQ 197 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~ 197 (439)
+..+++++.|++++ |. +..+|. -..+|+.|.+++|. ++.+|..+. .+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~------c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKD------CD-IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCC------CC-CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 44567777777776 54 455552 12346777776655 566665442 4667777776644555554
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.08 E-value=3.8e-06 Score=72.45 Aligned_cols=256 Identities=16% Similarity=0.049 Sum_probs=133.3
Q ss_pred hhcCCceeEEeCCcccccccccccc----ccccccccccccceeecCCCCCc----cCCh-------hHhhccCCcEeec
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIK----EIPKNIEKLVHLRYLNLSRLKIE----KLPE-------TLCELYNLQLLNV 186 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~----~lp~-------~i~~l~~L~~L~l 186 (439)
+..+..+..++|++ |.+-+ .+...+.+-++|++.+++.-..+ .+|+ .+-+||+|+..++
T Consensus 26 l~~~d~~~evdLSG------NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 26 LEMMDELVEVDLSG------NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHhhcceeEEeccC------CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 34467788888888 66322 23344556677888877765533 2222 2334555555555
Q ss_pred CCCCcccccchh----hhhccccceeeccCccccccCC-cccccCcccccccceeeccccccccccccccCcceeeeccc
Q 044264 187 ESCQDLKELPQG----FGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 187 ~~~~~~~~l~~~----i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
++|-+....|+. +++-..|.+|.+++|.. ..+. ..++ ..|.+|. .-.-...-|.|+......|
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rig--kal~~la---------~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIG--KALFHLA---------YNKKAADKPKLEVVICGRN 167 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHH--HHHHHHH---------HHhhhccCCCceEEEeccc
Confidence 555443333332 23334455555554432 1110 0011 0111111 0112334567777777666
Q ss_pred CCcchhccCChHHHHHhCCCCCCccEEEEeeccCCcc-----CCchhhcccCccEEeecCCCCCCcCC-----CCCCcCC
Q 044264 262 HGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV-----HPHWMMSLTDLRILTLSHCINCEHLP-----PLGKLPS 331 (439)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~l~~ 331 (439)
....+ ........+....+|+++.+.+|.+..- +...+..+++|+.|++.+|.++..-. .++.++.
T Consensus 168 Rleng----s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 168 RLENG----SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred hhccC----cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 42110 1122333444556899999998877631 01123478999999999988764322 2567788
Q ss_pred cCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCcccccc---CCCcccccCcccceeeecccc
Q 044264 332 LEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDY---GDTIKGEIMPRLSSLCIARCP 407 (439)
Q Consensus 332 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~~~~p~L~~L~i~~c~ 407 (439)
|+.|.+.+|-.-..-...+... ..-..+|+|..|...+...=..+.. -.......+|-|..|.+.|++
T Consensus 244 lrEL~lnDClls~~G~~~v~~~--------f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRR--------FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hhhccccchhhccccHHHHHHH--------hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 9999999886222211111100 0023467777777765432111110 111233578888888888773
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=4.5e-06 Score=51.87 Aligned_cols=34 Identities=38% Similarity=0.513 Sum_probs=21.2
Q ss_pred ccceeecCCCCCccCChhHhhccCCcEeecCCCC
Q 044264 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQ 190 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~ 190 (439)
+|++|++++|.++.+|+.+++|++|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 5666666666666666666666666666666665
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.01 E-value=1.6e-07 Score=91.15 Aligned_cols=126 Identities=16% Similarity=0.025 Sum_probs=62.4
Q ss_pred CCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeec
Q 044264 180 NLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLY 259 (439)
Q Consensus 180 ~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 259 (439)
.|...+.++|. +..+..++.-++.|++|++++|.. .+. ..+..++.|++|++++|.......-.-.+|. |+.|.+.
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~-~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKF-TKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhh-hhh-HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 34444444444 444555556666666777766653 222 2455666666666666654432222223333 5666665
Q ss_pred ccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccC-CchhhcccCccEEeecCCCC
Q 044264 260 FGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH-PHWMMSLTDLRILTLSHCIN 319 (439)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~ 319 (439)
+|. ... ...+.++++|+.|++++|-+...- ...++.+..|+.|+|.||+.
T Consensus 241 nN~---------l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNA---------LTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccH---------HHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 552 111 123344556666666665444310 11233455566666666554
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.95 E-value=4.8e-07 Score=87.95 Aligned_cols=110 Identities=27% Similarity=0.214 Sum_probs=72.0
Q ss_pred cccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchh-hhhccccceeeccCccccccCCcccccC
Q 044264 148 IPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGIERL 226 (439)
Q Consensus 148 ~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l 226 (439)
+..++.-++.|+.|+|++|+++.+. .+..|++|++||+++|. +..+|.- ...+ +|+.|.+.+|.. +.+ .++.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l-~tL-~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNAL-TTL-RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHH-Hhh-hhHHhh
Confidence 3344555677788888888877665 67777888888888776 5555542 1222 377777777763 333 457778
Q ss_pred cccccccceeecccc-ccccccccccCcceeeecccC
Q 044264 227 TSLRRVEKFVVGRGV-ARSSELENKKNLIDLLLYFGH 262 (439)
Q Consensus 227 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~ 262 (439)
.+|+.|++++|-..+ .-..-+..+..|+.|.+.+|.
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888888887776543 223345666677777777774
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.94 E-value=1.7e-06 Score=85.54 Aligned_cols=235 Identities=19% Similarity=0.173 Sum_probs=110.7
Q ss_pred ccCCcEeecCCCCcccc--cchhhhhccccceeeccCc-cccccCC----cccccCcccccccceeec-ccccccccccc
Q 044264 178 LYNLQLLNVESCQDLKE--LPQGFGKLINLMYLLNRGT-ESLRYLP----AGIERLTSLRRVEKFVVG-RGVARSSELEN 249 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~--l~~~i~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~ 249 (439)
++.|+.|.+.+|..+.. +-.....+++|+.|+++++ ......+ .....+++|+.|++..+. ..+.....++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666654444 3334556667777776652 2111111 122345666666666655 33333333332
Q ss_pred -ccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCcc--CCchhhcccCccEEeecCCCC---CCcC
Q 044264 250 -KKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV--HPHWMMSLTDLRILTLSHCIN---CEHL 323 (439)
Q Consensus 250 -l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~---~~~~ 323 (439)
|++|+.|.+..+... ....+......+++|++|+++++..... +.....++++|+.|.+..+.. .+..
T Consensus 267 ~c~~L~~L~l~~c~~l------t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~ 340 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNL------TDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDL 340 (482)
T ss_pred hCCCcceEccCCCCcc------chhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHH
Confidence 667777765544211 2345555556677777777776665431 122233566655555443321 1111
Q ss_pred C--CCCCc--CCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcc-eeeccCCCCcc-ccccCCCcccccCcc
Q 044264 324 P--PLGKL--PSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLK-TIQFWDMYVLK-EWDYGDTIKGEIMPR 397 (439)
Q Consensus 324 ~--~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~l~-~~~~~~~~~~~~~p~ 397 (439)
. ..... ..+..+.+.+|+.++.......+ ..... .+.+.+|+.++ .+.... ..++.
T Consensus 341 ~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~--------------~~~~~~~~~l~gc~~l~~~l~~~~----~~~~~ 402 (482)
T KOG1947|consen 341 SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG--------------ISDLGLELSLRGCPNLTESLELRL----CRSDS 402 (482)
T ss_pred HHHHhhccCchhHhHHHHhcCCCcchhhhhhhh--------------ccCcchHHHhcCCcccchHHHHHh----ccCCc
Confidence 0 00011 12333333333333322111110 01111 33344454441 111111 12333
Q ss_pred cceeeecccccccCCCC-CCCC-CCCccEEEEcCCcchhhh
Q 044264 398 LSSLCIARCPTLRALPD-HLLQ-TTTLQKLEIWGCPNLQKQ 436 (439)
Q Consensus 398 L~~L~i~~c~~l~~l~~-~l~~-~~~L~~L~i~~c~~l~~~ 436 (439)
++.|.+..|...+.--. .... +.+++.+++.+|+.+...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 88888888866543211 1111 778888889888877654
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=2.2e-05 Score=73.41 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=52.4
Q ss_pred HHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCc
Q 044264 274 EVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDE 349 (439)
Q Consensus 274 ~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~ 349 (439)
.....+..+++++.|++++|.+..+ |. -.++|+.|.+++|.....+|. + .++|+.|.+++|..+..+|..
T Consensus 43 ~a~~r~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 43 EITPQIEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 3344456679999999999976665 62 234799999999988777775 3 369999999999767666543
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=1.2e-06 Score=76.53 Aligned_cols=225 Identities=16% Similarity=0.167 Sum_probs=115.7
Q ss_pred ccceeecCCCCCccCCh--h-HhhccCCcEeecCCCCcccc---cchhhhhccccceeeccCccccccCCccc-ccCccc
Q 044264 157 HLRYLNLSRLKIEKLPE--T-LCELYNLQLLNVESCQDLKE---LPQGFGKLINLMYLLNRGTESLRYLPAGI-ERLTSL 229 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~--~-i~~l~~L~~L~l~~~~~~~~---l~~~i~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L 229 (439)
-+..|.+.++.+...-. . -+.+..++.||+.+|. +.. +-..+.+|+.|++|+++.|+....+. .+ ....+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccce
Confidence 44455566665543321 2 2356788888888887 433 33445688888888888776432211 11 123355
Q ss_pred ccccceeecccc-ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccC
Q 044264 230 RRVEKFVVGRGV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTD 308 (439)
Q Consensus 230 ~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 308 (439)
+.|-+.+....- .....+..+|.++.|+++.| +++.+.+..+-... --+.
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N----------------------~~rq~n~Dd~c~e~-------~s~~ 174 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN----------------------SLRQLNLDDNCIED-------WSTE 174 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccc----------------------hhhhhccccccccc-------cchh
Confidence 555443322211 11122333344444444333 22222222222211 1123
Q ss_pred ccEEeecCCCCCCcCC--C-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccc
Q 044264 309 LRILTLSHCINCEHLP--P-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWD 385 (439)
Q Consensus 309 L~~L~l~~~~~~~~~~--~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 385 (439)
+++|....|....... . ..-+|++..+.+..|+ ++..... .+...+|.+-.|.+.. .++.+|.
T Consensus 175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~e------------k~se~~p~~~~LnL~~-~~idswa 240 (418)
T KOG2982|consen 175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSE------------KGSEPFPSLSCLNLGA-NNIDSWA 240 (418)
T ss_pred hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhc------------ccCCCCCcchhhhhcc-cccccHH
Confidence 4444455544322111 1 2346788888888887 4433322 1145577777777754 2344443
Q ss_pred cCCCcccccCcccceeeecccccccCCCC------CCCCCCCccEEEEc
Q 044264 386 YGDTIKGEIMPRLSSLCIARCPTLRALPD------HLLQTTTLQKLEIW 428 (439)
Q Consensus 386 ~~~~~~~~~~p~L~~L~i~~c~~l~~l~~------~l~~~~~L~~L~i~ 428 (439)
.- .+...||+|..|.+.++|.+..+.. -++.+++++.|+=+
T Consensus 241 sv--D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 241 SV--DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HH--HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 21 1335789999999999988776522 24567787777644
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=5.3e-06 Score=83.91 Aligned_cols=130 Identities=22% Similarity=0.149 Sum_probs=78.6
Q ss_pred CceeEEeCCcccccccccccccccccc-ccccccceeecCCCCCc--cCChhHhhccCCcEeecCCCCcccccchhhhhc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNI-EKLVHLRYLNLSRLKIE--KLPETLCELYNLQLLNVESCQDLKELPQGFGKL 202 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l 202 (439)
.+|+.|+++|.+.++ ..-|..+ ..+|.|+.|.+++-.+. .......++++|..||+++++ +..+ .++++|
T Consensus 122 ~nL~~LdI~G~~~~s-----~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS-----NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRL 194 (699)
T ss_pred HhhhhcCccccchhh-----ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhcc
Confidence 568888887732221 1112222 34677888887776532 223334567888888888877 5555 567788
Q ss_pred cccceeeccCccccc-cCCcccccCcccccccceeecccc------ccccccccccCcceeeecccC
Q 044264 203 INLMYLLNRGTESLR-YLPAGIERLTSLRRVEKFVVGRGV------ARSSELENKKNLIDLLLYFGH 262 (439)
Q Consensus 203 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~l~~l~~L~~L~l~~~~ 262 (439)
++|+.|.+.+-.+.. ..-..+..+++|+.|+++...... ...+.-..+|+|+.|+.++..
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 888888776654322 111345677888888877654332 222334457888888888764
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.82 E-value=1.8e-06 Score=85.42 Aligned_cols=228 Identities=19% Similarity=0.164 Sum_probs=104.8
Q ss_pred ccccceeecCCCC-Ccc--CChhHhhccCCcEeecCCC-Ccccccc----hhhhhccccceeeccCccccccC-Ccccc-
Q 044264 155 LVHLRYLNLSRLK-IEK--LPETLCELYNLQLLNVESC-QDLKELP----QGFGKLINLMYLLNRGTESLRYL-PAGIE- 224 (439)
Q Consensus 155 l~~L~~L~L~~~~-~~~--lp~~i~~l~~L~~L~l~~~-~~~~~l~----~~i~~l~~L~~L~l~~~~~~~~~-~~~~~- 224 (439)
+++|+.|.+.++. +.. +-.....+++|+.|++++| ......+ .....+.+|+.|++..+...... -..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4556666666554 433 3344455666666666652 2111111 12334456666666665532221 11122
Q ss_pred cCcccccccceeecc-cc-ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccC-------
Q 044264 225 RLTSLRRVEKFVVGR-GV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRG------- 295 (439)
Q Consensus 225 ~l~~L~~L~l~~~~~-~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------- 295 (439)
.+++|+.|.+..|.. .+ .+......+++|++|+++++... ....+......+++|+.|.+.....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~------~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~ 340 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL------TDSGLEALLKNCPNLRELKLLSLNGCPSLTDL 340 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc------hHHHHHHHHHhCcchhhhhhhhcCCCccHHHH
Confidence 256666666555542 22 22233445666777777665321 1122333344455555544433221
Q ss_pred -------C---ccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCc
Q 044264 296 -------N---NVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVV 365 (439)
Q Consensus 296 -------~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (439)
. .........+++++.+.+..|. ...... .+.+.+|+.++ ...... ..
T Consensus 341 ~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~--------~~~l~gc~~l~-~~l~~~------------~~ 398 (482)
T KOG1947|consen 341 SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL--------ELSLRGCPNLT-ESLELR------------LC 398 (482)
T ss_pred HHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch--------HHHhcCCcccc-hHHHHH------------hc
Confidence 0 0001122355555555555544 211110 22333333231 000000 12
Q ss_pred CCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCC
Q 044264 366 AFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL 412 (439)
Q Consensus 366 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l 412 (439)
.+..++.|.+..|...+.-...... .....++.+.+.+|+.+...
T Consensus 399 ~~~~l~~L~l~~~~~~t~~~l~~~~--~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 399 RSDSLRVLNLSDCRLVTDKGLRCLA--DSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cCCccceEecccCccccccchHHHh--hhhhccccCCccCcccccch
Confidence 2333889999988766554432211 11677888999999877543
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.7e-05 Score=49.32 Aligned_cols=40 Identities=33% Similarity=0.508 Sum_probs=30.1
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP 172 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 172 (439)
++|++|++++ +. +..+|..+++|++|++|++++|.++.++
T Consensus 1 ~~L~~L~l~~------N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN------NQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETS------SS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccC------CC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4688888888 76 5667776888888888888888887665
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.69 E-value=2.4e-05 Score=60.55 Aligned_cols=85 Identities=27% Similarity=0.353 Sum_probs=55.0
Q ss_pred hhcCCceeEEeCCccccccccccccccccccc-cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIE-KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFG 200 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~ 200 (439)
+.....|...++++ |. ...+|+.+. ..+.+..|++++|.+.++|..+..++.|+.|+++.|. +...|..+.
T Consensus 49 l~~~~el~~i~ls~------N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~ 120 (177)
T KOG4579|consen 49 LSKGYELTKISLSD------NG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIA 120 (177)
T ss_pred HhCCceEEEEeccc------ch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHH
Confidence 44555666667776 55 455555444 3446777777777777777777777777777777766 566666666
Q ss_pred hccccceeeccCcc
Q 044264 201 KLINLMYLLNRGTE 214 (439)
Q Consensus 201 ~l~~L~~L~l~~~~ 214 (439)
.|.+|-.|+..++.
T Consensus 121 ~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 121 PLIKLDMLDSPENA 134 (177)
T ss_pred HHHhHHHhcCCCCc
Confidence 66676666666554
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.59 E-value=2e-05 Score=68.17 Aligned_cols=141 Identities=17% Similarity=0.069 Sum_probs=86.8
Q ss_pred CCCCCCccEEEEeeccCCccCCch-----hhcccCccEEeecCCCCCCc-C-----CCCCCcCCcCeeeeccccCeeEeC
Q 044264 279 LQPPPNLKHLGIHQYRGNNVHPHW-----MMSLTDLRILTLSHCINCEH-L-----PPLGKLPSLEQLYFYSMGSVKRVG 347 (439)
Q Consensus 279 l~~~~~L~~L~l~~~~~~~~l~~~-----~~~~~~L~~L~l~~~~~~~~-~-----~~~~~l~~L~~L~l~~~~~l~~~~ 347 (439)
...-|.|++.....|+.... +.. +.+-.+|+.+.+..|.+... + -.+..+.+|+.|++.+|.... .+
T Consensus 153 aa~kp~Le~vicgrNRleng-s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~-~g 230 (388)
T COG5238 153 AADKPKLEVVICGRNRLENG-SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL-EG 230 (388)
T ss_pred hccCCCceEEEeccchhccC-cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh-hh
Confidence 34568999999999988764 432 22446899999998876533 1 125578999999999998443 22
Q ss_pred CccccccCCCCCCCCCCcCCCCcceeeccCCCCccccc--cCCCcccccCcccceeeecccccccC------CCCCC-CC
Q 044264 348 DEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWD--YGDTIKGEIMPRLSSLCIARCPTLRA------LPDHL-LQ 418 (439)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~~~p~L~~L~i~~c~~l~~------l~~~l-~~ 418 (439)
...++.. ...++.|++|.+.+|---..-. +-..+....+|+|..|...++.+-.. ++... .+
T Consensus 231 S~~La~a---------l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~ 301 (388)
T COG5238 231 SRYLADA---------LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDA 301 (388)
T ss_pred HHHHHHH---------hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcc
Confidence 2222221 4567889999999984221110 00111223578888888887744222 22222 24
Q ss_pred CCCccEEEEcCC
Q 044264 419 TTTLQKLEIWGC 430 (439)
Q Consensus 419 ~~~L~~L~i~~c 430 (439)
+|-|..|.+.|+
T Consensus 302 ~p~L~~le~ngN 313 (388)
T COG5238 302 VPLLVDLERNGN 313 (388)
T ss_pred cHHHHHHHHccC
Confidence 666666666665
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00028 Score=58.53 Aligned_cols=81 Identities=25% Similarity=0.336 Sum_probs=52.3
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhh-ccCCcEeecCCCCcccccch--hhhhc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCE-LYNLQLLNVESCQDLKELPQ--GFGKL 202 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~~l~~--~i~~l 202 (439)
.+...++|++ |. +..++ .+..+++|.+|.+..|.|+.+.+.+.. +++|..|.+.+|+ +.++.. .+..+
T Consensus 42 d~~d~iDLtd------Nd-l~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTD------ND-LRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASC 112 (233)
T ss_pred cccceecccc------cc-hhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccC
Confidence 3455677777 55 33342 366677888888888887777665554 5668888887776 444322 25566
Q ss_pred cccceeeccCccc
Q 044264 203 INLMYLLNRGTES 215 (439)
Q Consensus 203 ~~L~~L~l~~~~~ 215 (439)
++|++|.+-+|+.
T Consensus 113 p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 113 PKLEYLTLLGNPV 125 (233)
T ss_pred CccceeeecCCch
Confidence 7777777766653
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.32 E-value=0.00012 Score=60.76 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=42.4
Q ss_pred cccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhh-hccccceeeccCccccccCC--cccccCcccccc
Q 044264 156 VHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFG-KLINLMYLLNRGTESLRYLP--AGIERLTSLRRV 232 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~-~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L 232 (439)
.+...+||++|.+..++ .+..++.|.+|.+.+|. +..+.+.+. .+++|..|.+.+|.. ..+. ..+..++.|+.|
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcch-hhhhhcchhccCCcccee
Confidence 45566677777655444 24456677777776666 444433333 345666666666653 1111 123445555555
Q ss_pred cceeec
Q 044264 233 EKFVVG 238 (439)
Q Consensus 233 ~l~~~~ 238 (439)
.+.+|.
T Consensus 119 tll~Np 124 (233)
T KOG1644|consen 119 TLLGNP 124 (233)
T ss_pred eecCCc
Confidence 544443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=8.8e-06 Score=70.49 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=68.6
Q ss_pred HhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCC--cCCCCCCcCCcCeeeeccccCeeEeCCcccccc
Q 044264 277 EALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCE--HLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVE 354 (439)
Q Consensus 277 ~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 354 (439)
.....++.|++|.|+-|.+.+ ...+..|.+|+.|+|..|.+.. ++..+.++|+|+.|.|..|+....-+..+-...
T Consensus 35 sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~V 112 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKV 112 (388)
T ss_pred HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHH
Confidence 344568899999999999988 5778899999999999886543 334478899999999999997776665544333
Q ss_pred CCCCCCCCCCcCCCCcceeec
Q 044264 355 SDHGRASSSVVAFPKLKTIQF 375 (439)
Q Consensus 355 ~~~~~~~~~~~~l~~L~~L~l 375 (439)
+..+|+|++|+=
T Consensus 113 ---------LR~LPnLkKLDn 124 (388)
T KOG2123|consen 113 ---------LRVLPNLKKLDN 124 (388)
T ss_pred ---------HHHcccchhccC
Confidence 667899998874
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.12 E-value=0.0002 Score=55.58 Aligned_cols=90 Identities=21% Similarity=0.338 Sum_probs=64.5
Q ss_pred CCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhH
Q 044264 96 VKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETL 175 (439)
Q Consensus 96 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i 175 (439)
...|+..++++|. +....+.+...++....|++++ |. +..+|..+..++.|+.|+++.|.+...|..+
T Consensus 52 ~~el~~i~ls~N~-----fk~fp~kft~kf~t~t~lNl~~------ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi 119 (177)
T KOG4579|consen 52 GYELTKISLSDNG-----FKKFPKKFTIKFPTATTLNLAN------NE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVI 119 (177)
T ss_pred CceEEEEecccch-----hhhCCHHHhhccchhhhhhcch------hh-hhhchHHHhhhHHhhhcccccCccccchHHH
Confidence 3456666677765 2333333334556788888888 66 7778888888888999999998888888888
Q ss_pred hhccCCcEeecCCCCcccccchh
Q 044264 176 CELYNLQLLNVESCQDLKELPQG 198 (439)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~l~~~ 198 (439)
-.+.+|-+|+..++. ...+|-.
T Consensus 120 ~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHHhHHHhcCCCCc-cccCcHH
Confidence 788888888888776 4555543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.00015 Score=63.14 Aligned_cols=80 Identities=23% Similarity=0.192 Sum_probs=43.9
Q ss_pred cccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch--hhhhccccceeeccCccccccCC-----cccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ--GFGKLINLMYLLNRGTESLRYLP-----AGIE 224 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~--~i~~l~~L~~L~l~~~~~~~~~~-----~~~~ 224 (439)
..+|+.|++|.|+-|+|+.+. .+..|++|+.|.|..|. +..+.+ -+.++++|+.|.|..|+-...-+ ..+.
T Consensus 37 c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 345666666666666666654 24556666666666554 433322 24556666666666655333322 1244
Q ss_pred cCccccccc
Q 044264 225 RLTSLRRVE 233 (439)
Q Consensus 225 ~l~~L~~L~ 233 (439)
.+|+|++|+
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 566666665
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00018 Score=59.68 Aligned_cols=66 Identities=18% Similarity=0.416 Sum_probs=32.7
Q ss_pred CCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCC-CCCCCCCCCccEEEEcCCcch
Q 044264 366 AFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL-PDHLLQTTTLQKLEIWGCPNL 433 (439)
Q Consensus 366 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l-~~~l~~~~~L~~L~i~~c~~l 433 (439)
.++.++.|.+.+|.++.+|...... +..|+|+.|+|++|+.+++- -.++..+++|+.|.|.+-+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 3455555555555555555433221 24555555555555555442 123444555555555555443
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.00067 Score=58.70 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=15.4
Q ss_pred ccccceeecCCCC---CccCChhHhhccCCcEeecCCCC
Q 044264 155 LVHLRYLNLSRLK---IEKLPETLCELYNLQLLNVESCQ 190 (439)
Q Consensus 155 l~~L~~L~L~~~~---~~~lp~~i~~l~~L~~L~l~~~~ 190 (439)
+++|+.|.++.|. ...++..+.++++|++|++++|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 4444555554442 11333333333455555554444
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.00061 Score=58.94 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=52.4
Q ss_pred cccccccccccceeecCCCCCccCChhHhhccCCcEeecCCC--CcccccchhhhhccccceeeccCccccc-cCCcccc
Q 044264 148 IPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESC--QDLKELPQGFGKLINLMYLLNRGTESLR-YLPAGIE 224 (439)
Q Consensus 148 ~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~--~~~~~l~~~i~~l~~L~~L~l~~~~~~~-~~~~~~~ 224 (439)
+....-.+..|+.|++.+..++.+. .+..+++|++|.++.| +....++.-..++++|+++++++|.+-. +.-..+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 3343445666777777777655443 2345778888888888 3334455445566888888888876421 0011234
Q ss_pred cCcccccccceeec
Q 044264 225 RLTSLRRVEKFVVG 238 (439)
Q Consensus 225 ~l~~L~~L~l~~~~ 238 (439)
.+.+|..|++..|.
T Consensus 114 ~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 114 ELENLKSLDLFNCS 127 (260)
T ss_pred hhcchhhhhcccCC
Confidence 45555555555444
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.92 E-value=0.0025 Score=32.84 Aligned_cols=17 Identities=35% Similarity=0.712 Sum_probs=7.4
Q ss_pred cceeecCCCCCccCChh
Q 044264 158 LRYLNLSRLKIEKLPET 174 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~~ 174 (439)
|++|++++|.++.+|+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.00063 Score=56.54 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=39.4
Q ss_pred CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecc
Q 044264 326 LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIAR 405 (439)
Q Consensus 326 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~ 405 (439)
+..+++++.|.+.+|..+....-++++. ..|+|+.|+|++|+.+++-.... ...+++|+.|.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~------------~~~~L~~L~lsgC~rIT~~GL~~---L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG------------LAPSLQDLDLSGCPRITDGGLAC---LLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc------------cccchheeeccCCCeechhHHHH---HHHhhhhHHHHhcC
Confidence 4556666666666666555444333321 35667777777776665543221 24566677776666
Q ss_pred ccccc
Q 044264 406 CPTLR 410 (439)
Q Consensus 406 c~~l~ 410 (439)
.+.+.
T Consensus 186 l~~v~ 190 (221)
T KOG3864|consen 186 LPYVA 190 (221)
T ss_pred chhhh
Confidence 65443
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.23 E-value=0.062 Score=42.26 Aligned_cols=103 Identities=17% Similarity=0.340 Sum_probs=44.0
Q ss_pred ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc-cccccccccceeecCCCCCcc
Q 044264 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEK 170 (439)
Q Consensus 92 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~ 170 (439)
.|.++.+|+.+.+... +.......|..++.|+.+.+.+ + +..++ ..+..+..|+.+.+.. .+..
T Consensus 7 ~F~~~~~l~~i~~~~~------~~~I~~~~F~~~~~l~~i~~~~------~--~~~i~~~~F~~~~~l~~i~~~~-~~~~ 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT------IKKIGENAFSNCTSLKSINFPN------N--LTSIGDNAFSNCKSLESITFPN-NLKS 71 (129)
T ss_dssp TTTT-TT--EEEETST--------EE-TTTTTT-TT-SEEEESS------T--TSCE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred HHhCCCCCCEEEECCC------eeEeChhhcccccccccccccc------c--ccccceeeeecccccccccccc-cccc
Confidence 4556667777776642 2344444566666777777654 2 22222 3355565667776654 3333
Q ss_pred CCh-hHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccC
Q 044264 171 LPE-TLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRG 212 (439)
Q Consensus 171 lp~-~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~ 212 (439)
++. .+..+++|+.+.+..+ ...++ ..+.++ +|+.+.+..
T Consensus 72 i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 332 3445666666666543 22222 234454 666665543
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.70 E-value=0.053 Score=42.68 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=42.6
Q ss_pred hhhcCCceeEEeCCcccccccccccccc-ccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccc-h
Q 044264 121 LFDELTCLRALDFAMFQMWSWNGFIKEI-PKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELP-Q 197 (439)
Q Consensus 121 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~-~ 197 (439)
.|..+.+|+.+.+.. . +..+ ...+..+.+|+.+.+..+ +..++. .+..++.|+.+.+.++ ...++ .
T Consensus 7 ~F~~~~~l~~i~~~~------~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~ 75 (129)
T PF13306_consen 7 AFYNCSNLESITFPN------T--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDN 75 (129)
T ss_dssp TTTT-TT--EEEETS------T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TT
T ss_pred HHhCCCCCCEEEECC------C--eeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccc
Confidence 467777888888764 2 2233 344667777888888764 555553 4566767888888652 33333 2
Q ss_pred hhhhccccceeeccC
Q 044264 198 GFGKLINLMYLLNRG 212 (439)
Q Consensus 198 ~i~~l~~L~~L~l~~ 212 (439)
.+..+++|+.+.+..
T Consensus 76 ~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTT-TTECEEEETT
T ss_pred cccccccccccccCc
Confidence 455677777777754
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.50 E-value=0.017 Score=29.68 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=12.9
Q ss_pred CCcEeecCCCCcccccchhhhh
Q 044264 180 NLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 180 ~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
+|++|++++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46677777775 5566665543
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.24 E-value=0.025 Score=26.90 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=5.4
Q ss_pred ccceeecCCCCCccC
Q 044264 157 HLRYLNLSRLKIEKL 171 (439)
Q Consensus 157 ~L~~L~L~~~~~~~l 171 (439)
+|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.52 E-value=0.0035 Score=53.38 Aligned_cols=84 Identities=20% Similarity=0.164 Sum_probs=44.9
Q ss_pred cCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcc
Q 044264 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203 (439)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~ 203 (439)
.+....+||++. +. ...+-..++.+..|..|+++.+.+..+|..++.+..+.++++..|. .+..|.+.+.++
T Consensus 40 ~~kr~tvld~~s------~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 40 SFKRVTVLDLSS------NR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEP 111 (326)
T ss_pred ccceeeeehhhh------hH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccC
Confidence 444555555555 43 3333344445555555555555555555555555555555555544 555555555555
Q ss_pred ccceeeccCccc
Q 044264 204 NLMYLLNRGTES 215 (439)
Q Consensus 204 ~L~~L~l~~~~~ 215 (439)
+++.++..++.+
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 666555555543
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.55 E-value=0.0091 Score=50.93 Aligned_cols=88 Identities=20% Similarity=0.170 Sum_probs=73.1
Q ss_pred cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC
Q 044264 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP 172 (439)
Q Consensus 93 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 172 (439)
+..+.+.+.|+++.+. ...+...|+-++.|..|+++. +. +..+|..++....++.+++..|..+..|
T Consensus 38 i~~~kr~tvld~~s~r------~vn~~~n~s~~t~~~rl~~sk------nq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p 104 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR------LVNLGKNFSILTRLVRLDLSK------NQ-IKFLPKDAKQQRETVNAASHKNNHSQQP 104 (326)
T ss_pred hhccceeeeehhhhhH------HHhhccchHHHHHHHHHhccH------hh-HhhChhhHHHHHHHHHHHhhccchhhCC
Confidence 4566788999998876 334445577788889999988 66 7889999999999999999999999999
Q ss_pred hhHhhccCCcEeecCCCCccc
Q 044264 173 ETLCELYNLQLLNVESCQDLK 193 (439)
Q Consensus 173 ~~i~~l~~L~~L~l~~~~~~~ 193 (439)
.+.+..+++++++..++.+..
T Consensus 105 ~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred ccccccCCcchhhhccCcchH
Confidence 999999999999999887443
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.40 E-value=0.097 Score=28.07 Aligned_cols=18 Identities=28% Similarity=0.741 Sum_probs=11.8
Q ss_pred CCCccEEEEcCCcchhhh
Q 044264 419 TTTLQKLEIWGCPNLQKQ 436 (439)
Q Consensus 419 ~~~L~~L~i~~c~~l~~~ 436 (439)
+++|+.|+|++|++++..
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 456777777777766543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.34 E-value=0.25 Score=26.36 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=11.7
Q ss_pred cccceeecCCCCCccCChh
Q 044264 156 VHLRYLNLSRLKIEKLPET 174 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~ 174 (439)
++|++|+|++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.34 E-value=0.25 Score=26.36 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=11.7
Q ss_pred cccceeecCCCCCccCChh
Q 044264 156 VHLRYLNLSRLKIEKLPET 174 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~ 174 (439)
++|++|+|++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=82.58 E-value=0.064 Score=52.41 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=17.2
Q ss_pred cccceeecCCCCCc-----cCChhHhhccCCcEeecCCCC
Q 044264 156 VHLRYLNLSRLKIE-----KLPETLCELYNLQLLNVESCQ 190 (439)
Q Consensus 156 ~~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~~~ 190 (439)
..+++|.+..|.++ .+...+.....++.++++.|.
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 34555555555533 233344445555555555554
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=76.66 E-value=0.1 Score=50.96 Aligned_cols=165 Identities=22% Similarity=0.158 Sum_probs=70.7
Q ss_pred cccccccceeecCCCCCcc-----CChhHhhc-cCCcEeecCCCCcccc----cchhhhhccccceeeccCcccccc---
Q 044264 152 IEKLVHLRYLNLSRLKIEK-----LPETLCEL-YNLQLLNVESCQDLKE----LPQGFGKLINLMYLLNRGTESLRY--- 218 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~-----lp~~i~~l-~~L~~L~l~~~~~~~~----l~~~i~~l~~L~~L~l~~~~~~~~--- 218 (439)
+...+.|..|++++|.+.. +-..+... ..|++|++..|..... +...+.....++.+++..|.....
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 4444555555555555440 00111111 3344455555542221 223344455555666555543211
Q ss_pred -CCccc----ccCcccccccceeeccccc----cccccccccC-cceeeecccCCcchhccCChHHHHHhCCCC-CCccE
Q 044264 219 -LPAGI----ERLTSLRRVEKFVVGRGVA----RSSELENKKN-LIDLLLYFGHGNEERKRKKDEEVLEALQPP-PNLKH 287 (439)
Q Consensus 219 -~~~~~----~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~ 287 (439)
++..+ ....++++|.+..|..+.. ....+...+. +..|++..|...+. ........+..+ ..+++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~----g~~~L~~~l~~~~~~l~~ 266 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV----GVEKLLPCLSVLSETLRV 266 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH----HHHHHHHHhcccchhhhh
Confidence 11112 2345566666655554321 1122333343 44555555532110 122333344444 55566
Q ss_pred EEEeeccCCccC----CchhhcccCccEEeecCCCCC
Q 044264 288 LGIHQYRGNNVH----PHWMMSLTDLRILTLSHCINC 320 (439)
Q Consensus 288 L~l~~~~~~~~l----~~~~~~~~~L~~L~l~~~~~~ 320 (439)
+++..|.+.... ...+..++.++.+.++.|...
T Consensus 267 l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 267 LDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 666665554421 122234555666666655443
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.47 E-value=2.1 Score=22.85 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=10.7
Q ss_pred ccceeecCCCCCccCCh
Q 044264 157 HLRYLNLSRLKIEKLPE 173 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~ 173 (439)
+|+.|++++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666664
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.68 E-value=2 Score=22.19 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=4.0
Q ss_pred CCcEeecCCCC
Q 044264 180 NLQLLNVESCQ 190 (439)
Q Consensus 180 ~L~~L~l~~~~ 190 (439)
+|++|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 44444444444
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.49 E-value=4.3 Score=21.71 Aligned_cols=14 Identities=43% Similarity=0.529 Sum_probs=7.5
Q ss_pred cccceeecCCCCCc
Q 044264 156 VHLRYLNLSRLKIE 169 (439)
Q Consensus 156 ~~L~~L~L~~~~~~ 169 (439)
.+|++|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555544
No 86
>PF14162 YozD: YozD-like protein
Probab=62.77 E-value=8.8 Score=24.05 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHhCCCCcc
Q 044264 7 IDVIGEECFDIIARRSFFQE 26 (439)
Q Consensus 7 ~~~~~~~~~~~Lv~~sl~~~ 26 (439)
-|++|+-++.+|+.|+++-.
T Consensus 10 TEEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 10 TEEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHHHccCCCc
Confidence 48999999999999999853
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.28 E-value=5.2 Score=39.18 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=44.9
Q ss_pred cccccceeecCCCCCccC---ChhHhhccCCcEeecCCCCcccccchhhhhcc--ccceeeccCccccccCCc---cc--
Q 044264 154 KLVHLRYLNLSRLKIEKL---PETLCELYNLQLLNVESCQDLKELPQGFGKLI--NLMYLLNRGTESLRYLPA---GI-- 223 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~--~L~~L~l~~~~~~~~~~~---~~-- 223 (439)
+.+.+..++|++|++..+ .......|+|..|+|++|......-.++.++. .|++|-+.+|+..+..-. .+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 456677777777775433 33334567788888887743222222344433 567777777776544321 11
Q ss_pred --ccCccccccc
Q 044264 224 --ERLTSLRRVE 233 (439)
Q Consensus 224 --~~l~~L~~L~ 233 (439)
..+|+|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 2456666665
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.81 E-value=9.6 Score=20.65 Aligned_cols=13 Identities=46% Similarity=0.531 Sum_probs=6.9
Q ss_pred ccceeecCCCCCc
Q 044264 157 HLRYLNLSRLKIE 169 (439)
Q Consensus 157 ~L~~L~L~~~~~~ 169 (439)
+|++|+|++|.++
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.32 E-value=40 Score=33.38 Aligned_cols=82 Identities=15% Similarity=0.089 Sum_probs=45.7
Q ss_pred hcCCceeEEeCCccccccccccccccccccccccccceeecCCCC--CccCChhHh--hccCCcEeecCCCCcccccc--
Q 044264 123 DELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLK--IEKLPETLC--ELYNLQLLNVESCQDLKELP-- 196 (439)
Q Consensus 123 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~~~lp~~i~--~l~~L~~L~l~~~~~~~~l~-- 196 (439)
.+++.+..++|++|++ .. +..+.+.....++|+.|+|++|. +...+ ++. +...|+.|-+.||...+..-
T Consensus 215 ~n~p~i~sl~lsnNrL---~~-Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRL---YH-LDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred cCCcceeeeecccchh---hc-hhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhh
Confidence 3567788888887332 11 23333333456788888888883 33322 222 23567788888877544321
Q ss_pred h-----hhhhccccceee
Q 044264 197 Q-----GFGKLINLMYLL 209 (439)
Q Consensus 197 ~-----~i~~l~~L~~L~ 209 (439)
. .-...|+|..|+
T Consensus 290 s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHHhcchheeec
Confidence 1 112456666665
No 90
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=20.65 E-value=2.1e+02 Score=21.06 Aligned_cols=40 Identities=3% Similarity=0.089 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCCcceecCCCCCceeeeecHHHHHHHHHh
Q 044264 9 VIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFL 51 (439)
Q Consensus 9 ~~~~~~~~~Lv~~sl~~~~~~~~~~~~~~~~~hd~~~d~~~~~ 51 (439)
..|+.|+++|++++++...+ .++...+..-+-..++....
T Consensus 46 ~~~~~yi~~L~~~Gli~~~~---~~~~~~y~lT~KG~~fle~y 85 (95)
T COG3432 46 KRAQKYIEMLVEKGLIIKQD---NGRRKVYELTEKGKRFLEKY 85 (95)
T ss_pred HHHHHHHHHHHhCCCEEecc---CCccceEEEChhHHHHHHHH
Confidence 56899999999999765544 33444567777777665443
Done!