Query 044264
Match_columns 439
No_of_seqs 231 out of 3495
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 22:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.9E-31 2.4E-35 271.8 14.9 259 73-350 268-558 (768)
2 3v47_A TOLL-like receptor 5B a 100.0 1.9E-29 6.5E-34 246.0 22.9 339 59-431 15-406 (455)
3 3rgz_A Protein brassinosteroid 100.0 2.3E-30 7.9E-35 267.9 15.1 321 74-431 294-715 (768)
4 4eco_A Uncharacterized protein 100.0 2E-29 6.7E-34 255.2 17.4 330 73-431 205-598 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 7.9E-29 2.7E-33 255.5 19.4 332 73-431 447-838 (876)
6 4eco_A Uncharacterized protein 100.0 1.9E-29 6.4E-34 255.4 14.2 312 89-431 198-577 (636)
7 2id5_A Lingo-1, leucine rich r 100.0 1.1E-28 3.8E-33 242.0 18.9 313 78-431 15-331 (477)
8 4ecn_A Leucine-rich repeat pro 100.0 3.5E-29 1.2E-33 258.2 15.8 290 118-431 440-787 (876)
9 3t6q_A CD180 antigen; protein- 100.0 2.7E-28 9.2E-33 246.6 21.9 347 60-431 18-460 (606)
10 4fmz_A Internalin; leucine ric 100.0 9E-29 3.1E-33 232.5 16.7 302 73-431 43-344 (347)
11 2z7x_B TOLL-like receptor 1, v 100.0 4.8E-28 1.6E-32 240.2 21.1 332 72-431 19-479 (520)
12 3o6n_A APL1; leucine-rich repe 100.0 5E-28 1.7E-32 231.1 18.8 304 73-431 44-350 (390)
13 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-27 4.8E-32 238.9 22.8 345 58-431 35-508 (562)
14 3vq2_A TLR4, TOLL-like recepto 100.0 6.4E-28 2.2E-32 243.8 19.9 352 58-431 15-435 (606)
15 3v47_A TOLL-like receptor 5B a 100.0 7.7E-28 2.6E-32 234.7 19.7 321 78-431 14-382 (455)
16 2z7x_B TOLL-like receptor 1, v 100.0 4.3E-28 1.5E-32 240.5 16.9 328 77-431 3-455 (520)
17 2z63_A TOLL-like receptor 4, v 100.0 1.3E-27 4.5E-32 239.8 19.0 172 248-431 344-529 (570)
18 3t6q_A CD180 antigen; protein- 99.9 3.5E-27 1.2E-31 238.4 20.1 251 158-430 256-510 (606)
19 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.2E-27 1.1E-31 236.3 19.5 328 75-431 32-484 (562)
20 3oja_B Anopheles plasmodium-re 99.9 2.8E-27 9.6E-32 238.1 18.5 304 73-431 50-356 (597)
21 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-26 4.7E-31 242.1 24.3 341 57-430 7-391 (844)
22 2z81_A CD282 antigen, TOLL-lik 99.9 9.9E-27 3.4E-31 232.3 22.1 330 73-431 25-508 (549)
23 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-26 6.6E-31 236.1 22.7 340 59-430 9-363 (680)
24 3vq2_A TLR4, TOLL-like recepto 99.9 4.1E-27 1.4E-31 237.9 17.4 120 73-203 55-177 (606)
25 1o6v_A Internalin A; bacterial 99.9 2.1E-26 7.2E-31 225.0 21.0 311 74-431 46-386 (466)
26 4fmz_A Internalin; leucine ric 99.9 6.2E-27 2.1E-31 220.0 16.6 282 94-431 41-322 (347)
27 2id5_A Lingo-1, leucine rich r 99.9 1.3E-26 4.3E-31 227.4 19.4 310 60-407 17-331 (477)
28 1o6v_A Internalin A; bacterial 99.9 1.4E-26 4.9E-31 226.1 18.8 293 73-414 67-392 (466)
29 3bz5_A Internalin-J, INLJ; leu 99.9 4.4E-26 1.5E-30 221.2 21.6 296 73-431 41-350 (457)
30 3o6n_A APL1; leucine-rich repe 99.9 1.4E-26 4.9E-31 221.0 17.8 285 95-431 43-329 (390)
31 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-26 3.9E-31 231.9 17.8 168 81-261 12-182 (549)
32 1ogq_A PGIP-2, polygalacturona 99.9 3.4E-27 1.2E-31 218.1 11.9 249 74-343 50-304 (313)
33 1ogq_A PGIP-2, polygalacturona 99.9 6.8E-27 2.3E-31 216.1 11.2 250 97-381 50-304 (313)
34 3j0a_A TOLL-like receptor 5; m 99.9 7.6E-26 2.6E-30 236.5 20.4 313 78-431 8-373 (844)
35 3oja_B Anopheles plasmodium-re 99.9 6.1E-26 2.1E-30 228.4 17.5 285 95-431 49-335 (597)
36 2z63_A TOLL-like receptor 4, v 99.9 9.4E-26 3.2E-30 226.3 16.5 357 59-431 12-505 (570)
37 1ziw_A TOLL-like receptor 3; i 99.9 7.5E-25 2.6E-29 224.3 23.3 342 73-431 72-515 (680)
38 4fcg_A Uncharacterized protein 99.9 1E-25 3.5E-30 209.4 13.0 231 124-405 79-310 (328)
39 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-25 5.6E-30 217.2 14.4 274 92-430 37-328 (457)
40 2ft3_A Biglycan; proteoglycan, 99.9 5.1E-25 1.7E-29 205.5 17.1 292 75-431 34-331 (332)
41 1xku_A Decorin; proteoglycan, 99.9 4E-25 1.4E-29 206.0 16.0 239 75-341 32-274 (330)
42 1xku_A Decorin; proteoglycan, 99.9 2.2E-24 7.4E-29 201.1 20.1 290 98-431 32-330 (330)
43 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-24 7.1E-29 219.2 21.3 146 58-215 35-185 (635)
44 4fcg_A Uncharacterized protein 99.9 2E-24 6.7E-29 200.7 16.3 232 155-430 80-311 (328)
45 2ft3_A Biglycan; proteoglycan, 99.9 3.6E-23 1.2E-27 193.0 17.6 267 72-378 52-330 (332)
46 1jl5_A Outer protein YOPM; leu 99.9 8E-23 2.7E-27 198.1 18.5 310 59-431 76-407 (454)
47 2z66_A Variable lymphocyte rec 99.9 1.3E-23 4.5E-28 193.6 11.8 242 78-341 11-259 (306)
48 2z80_A TOLL-like receptor 2, v 99.9 2.2E-23 7.7E-28 196.1 13.5 264 79-379 36-312 (353)
49 1jl5_A Outer protein YOPM; leu 99.9 2.9E-23 9.9E-28 201.2 11.8 226 73-341 10-248 (454)
50 1ozn_A Reticulon 4 receptor; N 99.9 4.1E-23 1.4E-27 188.3 10.3 222 77-319 14-237 (285)
51 3zyi_A Leucine-rich repeat-con 99.9 2.1E-22 7.1E-27 195.9 15.4 242 76-341 56-301 (452)
52 3zyj_A Leucine-rich repeat-con 99.9 3.1E-22 1.1E-26 193.9 14.9 242 76-341 45-290 (440)
53 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-24 3.6E-29 212.8 -2.5 332 73-431 27-409 (461)
54 2z66_A Variable lymphocyte rec 99.9 1.9E-22 6.3E-27 185.9 12.6 243 100-379 10-259 (306)
55 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-23 4.7E-28 194.3 4.2 250 118-411 26-277 (317)
56 2z80_A TOLL-like receptor 2, v 99.9 2.4E-22 8.2E-27 189.0 12.1 265 60-342 37-313 (353)
57 4g8a_A TOLL-like receptor 4; l 99.9 1.4E-21 4.7E-26 198.4 17.0 145 82-240 39-186 (635)
58 3g06_A SSPH2 (leucine-rich rep 99.9 2.4E-21 8.3E-26 193.5 17.3 256 74-431 40-295 (622)
59 3o53_A Protein LRIM1, AGAP0063 99.9 7.7E-23 2.6E-27 189.3 5.8 247 93-384 30-278 (317)
60 3zyj_A Leucine-rich repeat-con 99.9 2E-21 7E-26 188.2 15.0 242 99-379 45-290 (440)
61 3zyi_A Leucine-rich repeat-con 99.9 4E-21 1.4E-25 186.8 16.1 242 99-379 56-301 (452)
62 1ozn_A Reticulon 4 receptor; N 99.8 4.4E-21 1.5E-25 174.8 12.5 219 100-341 14-236 (285)
63 1wwl_A Monocyte differentiatio 99.8 5.2E-22 1.8E-26 183.3 5.2 177 158-341 65-264 (312)
64 1z7x_W Ribonuclease inhibitor; 99.8 9.7E-24 3.3E-28 206.0 -7.2 337 73-431 2-381 (461)
65 3oja_A Leucine-rich immune mol 99.8 1E-20 3.5E-25 185.1 12.7 218 95-343 32-250 (487)
66 1wwl_A Monocyte differentiatio 99.8 7.1E-22 2.4E-26 182.4 3.8 243 95-378 41-306 (312)
67 3ogk_B Coronatine-insensitive 99.8 1.7E-22 5.7E-27 203.6 -1.4 177 73-259 111-326 (592)
68 3g06_A SSPH2 (leucine-rich rep 99.8 8.9E-20 3.1E-24 182.2 17.7 251 58-379 44-295 (622)
69 3oja_A Leucine-rich immune mol 99.8 5.4E-21 1.8E-25 187.1 8.5 242 122-407 30-273 (487)
70 3ogk_B Coronatine-insensitive 99.8 5.9E-22 2E-26 199.6 -0.6 204 95-315 110-350 (592)
71 2z62_A TOLL-like receptor 4, v 99.8 6.1E-20 2.1E-24 166.4 12.0 156 85-254 18-176 (276)
72 2z62_A TOLL-like receptor 4, v 99.8 2.5E-19 8.6E-24 162.3 12.3 204 126-341 28-235 (276)
73 1h6u_A Internalin H; cell adhe 99.8 3.2E-19 1.1E-23 164.1 12.4 175 152-347 59-233 (308)
74 2ca6_A RAN GTPase-activating p 99.8 1.5E-20 5E-25 179.1 3.2 243 87-341 22-314 (386)
75 2o6q_A Variable lymphocyte rec 99.8 9.9E-19 3.4E-23 157.8 14.1 176 157-341 38-216 (270)
76 2p1m_B Transport inhibitor res 99.8 8.8E-21 3E-25 191.0 -0.0 136 73-213 104-245 (594)
77 2ast_B S-phase kinase-associat 99.8 4.5E-20 1.5E-24 172.3 4.4 149 98-261 48-205 (336)
78 3rfs_A Internalin B, repeat mo 99.8 4.1E-19 1.4E-23 160.5 9.9 180 152-347 59-239 (272)
79 1p9a_G Platelet glycoprotein I 99.8 6.5E-19 2.2E-23 160.5 11.1 36 282-318 171-206 (290)
80 2ast_B S-phase kinase-associat 99.8 3.2E-19 1.1E-23 166.5 6.4 229 74-324 70-310 (336)
81 1p9a_G Platelet glycoprotein I 99.8 2.1E-18 7E-23 157.2 11.5 200 73-297 9-209 (290)
82 2o6q_A Variable lymphocyte rec 99.8 3.4E-18 1.1E-22 154.3 12.7 199 76-321 18-219 (270)
83 1h6u_A Internalin H; cell adhe 99.8 2E-18 6.8E-23 158.8 10.3 171 122-319 59-229 (308)
84 3rfs_A Internalin B, repeat mo 99.8 2.7E-18 9.3E-23 155.1 10.8 163 152-330 81-246 (272)
85 4glp_A Monocyte differentiatio 99.7 5.6E-18 1.9E-22 156.1 11.0 159 95-261 62-234 (310)
86 2p1m_B Transport inhibitor res 99.7 9.4E-20 3.2E-24 183.5 -1.8 226 73-316 65-347 (594)
87 2xwt_C Thyrotropin receptor; s 99.7 1.1E-17 3.9E-22 148.0 11.6 59 368-432 179-238 (239)
88 2ca6_A RAN GTPase-activating p 99.7 2.9E-18 9.9E-23 163.1 7.5 256 73-340 31-340 (386)
89 2xwt_C Thyrotropin receptor; s 99.7 4.7E-18 1.6E-22 150.5 7.7 84 279-380 151-238 (239)
90 4ay9_X Follicle-stimulating ho 99.7 4.5E-17 1.6E-21 152.6 13.6 230 142-405 19-255 (350)
91 3goz_A Leucine-rich repeat-con 99.7 1E-18 3.5E-23 164.7 1.9 256 102-379 3-295 (362)
92 4ay9_X Follicle-stimulating ho 99.7 2.5E-17 8.6E-22 154.3 11.3 235 100-377 12-255 (350)
93 4glp_A Monocyte differentiatio 99.7 3.9E-17 1.3E-21 150.4 10.1 198 180-407 92-305 (310)
94 3goz_A Leucine-rich repeat-con 99.7 5.5E-18 1.9E-22 159.7 4.3 236 90-341 15-295 (362)
95 3m19_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 142.3 11.9 175 126-341 14-190 (251)
96 3m19_A Variable lymphocyte rec 99.7 2E-16 6.9E-21 141.0 12.3 172 75-261 15-189 (251)
97 1h6t_A Internalin B; cell adhe 99.7 1E-16 3.5E-21 146.1 8.7 169 123-341 43-211 (291)
98 1h6t_A Internalin B; cell adhe 99.7 2.3E-16 7.9E-21 143.7 9.9 147 93-261 42-188 (291)
99 1m9s_A Internalin B; cell inva 99.6 4.3E-16 1.5E-20 155.4 11.5 170 152-341 39-208 (605)
100 1m9s_A Internalin B; cell inva 99.6 5.1E-16 1.7E-20 154.9 10.6 150 152-320 61-210 (605)
101 4ezg_A Putative uncharacterize 99.6 2.7E-16 9.1E-21 134.7 6.8 151 153-341 41-192 (197)
102 1xeu_A Internalin C; cellular 99.6 2.6E-15 8.9E-20 134.6 9.3 167 124-341 17-183 (263)
103 4ezg_A Putative uncharacterize 99.6 7.7E-15 2.6E-19 125.6 11.4 149 73-238 43-192 (197)
104 3cvr_A Invasion plasmid antige 99.6 1.6E-15 5.4E-20 149.8 7.8 36 286-322 210-245 (571)
105 3cvr_A Invasion plasmid antige 99.6 2.9E-15 1E-19 147.9 9.3 180 126-346 59-246 (571)
106 2o6s_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 127.9 9.4 122 79-214 12-135 (208)
107 1dce_A Protein (RAB geranylger 99.6 1.6E-16 5.6E-21 157.5 -2.1 198 153-375 346-567 (567)
108 1xeu_A Internalin C; cellular 99.5 1.7E-15 5.8E-20 135.8 3.8 170 95-297 17-186 (263)
109 2o6s_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 122.9 11.5 162 72-252 26-190 (208)
110 1dce_A Protein (RAB geranylger 99.5 1.5E-16 5E-21 157.9 -3.6 121 204-337 442-567 (567)
111 3e6j_A Variable lymphocyte rec 99.5 2.1E-14 7.3E-19 125.9 10.5 148 76-239 21-171 (229)
112 2v9t_B SLIT homolog 2 protein 99.5 1.9E-14 6.5E-19 125.3 9.9 148 78-238 15-163 (220)
113 4b8c_D Glucose-repressible alc 99.5 3.6E-15 1.2E-19 152.4 5.8 168 73-250 172-339 (727)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 8.2E-14 2.8E-18 121.3 10.3 148 78-238 15-164 (220)
115 3e6j_A Variable lymphocyte rec 99.5 5.1E-14 1.8E-18 123.4 8.8 57 284-341 113-170 (229)
116 2xot_A Amphoterin-induced prot 99.5 5.3E-14 1.8E-18 132.3 9.0 172 77-262 21-200 (361)
117 2v9t_B SLIT homolog 2 protein 99.5 1.2E-13 4E-18 120.3 10.0 129 126-261 32-162 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.5 1.3E-13 4.4E-18 120.0 9.9 147 100-261 14-163 (220)
119 2xot_A Amphoterin-induced prot 99.5 4.2E-14 1.4E-18 133.0 7.1 126 100-240 21-149 (361)
120 2ell_A Acidic leucine-rich nuc 99.4 1.3E-13 4.6E-18 114.6 8.0 110 118-237 41-157 (168)
121 2je0_A Acidic leucine-rich nuc 99.4 1E-13 3.4E-18 112.9 6.9 123 97-234 17-147 (149)
122 2ell_A Acidic leucine-rich nuc 99.4 1.9E-13 6.5E-18 113.6 7.9 131 123-261 21-157 (168)
123 2je0_A Acidic leucine-rich nuc 99.4 1.2E-13 4.3E-18 112.3 6.3 128 124-259 15-148 (149)
124 1a9n_A U2A', U2A'; complex (nu 99.4 5.2E-13 1.8E-17 111.9 9.0 130 93-238 15-151 (176)
125 3sb4_A Hypothetical leucine ri 99.4 3E-12 1E-16 118.6 14.9 284 96-426 24-327 (329)
126 4b8c_D Glucose-repressible alc 99.4 8.4E-14 2.9E-18 142.4 3.9 155 87-261 214-369 (727)
127 1w8a_A SLIT protein; signaling 99.3 2.6E-12 8.9E-17 109.2 9.2 124 129-261 11-136 (192)
128 1a9n_A U2A', U2A'; complex (nu 99.3 1.2E-12 4E-17 109.7 6.6 129 122-262 15-151 (176)
129 2wfh_A SLIT homolog 2 protein 99.3 6.7E-12 2.3E-16 106.7 10.4 123 129-261 13-136 (193)
130 1ds9_A Outer arm dynein; leuci 99.3 7E-14 2.4E-18 119.7 -2.1 136 122-261 14-150 (198)
131 1w8a_A SLIT protein; signaling 99.3 4.1E-12 1.4E-16 108.0 8.4 127 77-216 11-139 (192)
132 1ds9_A Outer arm dynein; leuci 99.3 2.9E-14 9.8E-19 122.1 -5.4 145 98-257 24-180 (198)
133 2wfh_A SLIT homolog 2 protein 99.2 2.9E-11 9.8E-16 102.7 10.1 123 78-215 14-138 (193)
134 2o6r_A Variable lymphocyte rec 99.2 3.6E-11 1.2E-15 100.7 9.1 126 77-216 10-137 (177)
135 4fdw_A Leucine rich hypothetic 99.1 5.2E-10 1.8E-14 106.1 14.8 107 277-405 265-379 (401)
136 3sb4_A Hypothetical leucine ri 99.1 1E-10 3.6E-15 108.2 9.7 282 74-402 25-327 (329)
137 2o6r_A Variable lymphocyte rec 99.1 1.6E-10 5.4E-15 96.7 9.9 62 152-214 48-111 (177)
138 4fdw_A Leucine rich hypothetic 99.1 6.8E-09 2.3E-13 98.3 19.1 235 157-430 136-380 (401)
139 2r9u_A Variable lymphocyte rec 99.0 4.7E-10 1.6E-14 93.4 8.3 82 126-214 33-116 (174)
140 2r9u_A Variable lymphocyte rec 99.0 8.3E-10 2.9E-14 91.9 7.5 100 77-190 15-116 (174)
141 3g39_A Variable lymphocyte rec 99.0 9.7E-10 3.3E-14 91.2 7.8 65 149-214 47-113 (170)
142 3g39_A Variable lymphocyte rec 98.9 1.8E-09 6E-14 89.6 8.1 101 128-239 11-114 (170)
143 4fs7_A Uncharacterized protein 98.9 1.6E-08 5.5E-13 95.9 15.1 284 91-428 65-374 (394)
144 4fs7_A Uncharacterized protein 98.9 4.7E-08 1.6E-12 92.7 18.2 304 73-425 70-393 (394)
145 3un9_A NLR family member X1; l 98.9 6.2E-10 2.1E-14 104.4 3.0 60 155-214 125-194 (372)
146 3un9_A NLR family member X1; l 98.7 7.9E-10 2.7E-14 103.7 -0.6 166 125-320 71-252 (372)
147 2ra8_A Uncharacterized protein 98.6 8.6E-09 2.9E-13 95.9 3.1 67 249-320 250-320 (362)
148 2ifg_A High affinity nerve gro 98.6 6E-08 2E-12 90.3 7.7 101 79-191 13-115 (347)
149 2ra8_A Uncharacterized protein 98.6 2.1E-08 7.2E-13 93.3 4.4 61 281-341 250-318 (362)
150 2ifg_A High affinity nerve gro 98.6 7.5E-08 2.6E-12 89.6 7.4 101 101-215 12-115 (347)
151 4gt6_A Cell surface protein; l 98.5 1.1E-06 3.8E-11 83.2 14.4 109 92-212 58-169 (394)
152 4gt6_A Cell surface protein; l 98.5 4.9E-06 1.7E-10 78.7 16.6 304 75-428 65-386 (394)
153 3e4g_A ATP synthase subunit S, 98.4 2.2E-08 7.4E-13 82.1 -0.0 70 366-435 83-154 (176)
154 3e4g_A ATP synthase subunit S, 98.3 3.1E-08 1E-12 81.2 -1.6 40 369-411 115-154 (176)
155 1io0_A Tropomodulin; LRR prote 98.3 2.4E-07 8.2E-12 77.7 2.3 94 115-210 25-128 (185)
156 4h09_A Hypothetical leucine ri 98.2 8.4E-05 2.9E-09 69.7 17.8 78 73-166 45-123 (379)
157 1io0_A Tropomodulin; LRR prote 98.1 5.7E-06 2E-10 69.2 6.9 117 92-215 31-163 (185)
158 4h09_A Hypothetical leucine ri 98.1 7.6E-05 2.6E-09 70.0 15.0 261 92-404 41-341 (379)
159 3rw6_A Nuclear RNA export fact 98.0 1.1E-05 3.6E-10 71.2 7.7 79 154-234 168-258 (267)
160 3rw6_A Nuclear RNA export fact 97.9 1.5E-05 5E-10 70.4 5.7 62 177-240 168-233 (267)
161 2a5y_B CED-4; apoptosis; HET: 96.8 0.00063 2.1E-08 67.1 4.0 49 4-56 424-472 (549)
162 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0055 1.9E-07 50.9 4.5 98 114-212 29-135 (197)
163 1pgv_A TMD-1, tropomodulin TMD 95.7 0.02 6.8E-07 47.6 6.5 118 94-214 38-168 (197)
164 3rfe_A Platelet glycoprotein I 94.3 0.051 1.7E-06 41.9 4.7 35 156-190 31-66 (130)
165 3rfe_A Platelet glycoprotein I 93.8 0.1 3.6E-06 40.1 5.6 53 160-215 12-67 (130)
166 3sfz_A APAF-1, apoptotic pepti 89.2 0.36 1.2E-05 52.4 5.5 45 8-55 408-452 (1249)
167 1z6t_A APAF-1, apoptotic prote 72.9 2.5 8.7E-05 41.6 4.0 41 9-52 409-449 (591)
168 1vt4_I APAF-1 related killer D 65.6 4.3 0.00015 42.7 3.8 35 9-48 402-436 (1221)
169 2lz0_A Uncharacterized protein 29.9 87 0.003 22.1 4.8 39 301-339 14-52 (100)
170 2lz0_A Uncharacterized protein 27.0 20 0.00069 25.6 1.0 39 91-135 14-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=6.9e-31 Score=271.85 Aligned_cols=259 Identities=23% Similarity=0.269 Sum_probs=182.0
Q ss_pred CCceeEEEEEcCCCC-CcCcccCCC-CCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGA-PFPISFCSV-KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~-~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
..+++.+.+..+... .+|..+... ++|+.|++++|. +.+..|..+..+++|++|++++ |.+.+.+|.
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-----l~~~~p~~~~~l~~L~~L~L~~------n~l~~~ip~ 336 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-----FYGAVPPFFGSCSLLESLALSS------NNFSGELPM 336 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-----EEECCCGGGGGCTTCCEEECCS------SEEEEECCH
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-----CCCccchHHhcCCCccEEECCC------CcccCcCCH
Confidence 456777777666553 556655553 777777777765 4556666677777777777777 554445554
Q ss_pred c-cccccccceeecCCCCCc-cCChhHhhcc-C--------------------------CcEeecCCCCcccccchhhhh
Q 044264 151 N-IEKLVHLRYLNLSRLKIE-KLPETLCELY-N--------------------------LQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 151 ~-~~~l~~L~~L~L~~~~~~-~lp~~i~~l~-~--------------------------L~~L~l~~~~~~~~l~~~i~~ 201 (439)
. +..+++|++|++++|.++ .+|..+.+++ + |++|++++|.....+|..+++
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence 4 666666777777666654 5565555554 4 445555555433356666777
Q ss_pred ccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCC
Q 044264 202 LINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQP 281 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 281 (439)
+++|++|++++|......|..++.+++|+.|++..|...+..+..+..+++|+.|++++|.. ...++..+..
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l--------~~~~p~~l~~ 488 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--------TGEIPSGLSN 488 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC--------CSCCCGGGGG
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc--------cCcCCHHHhc
Confidence 77777777777776666777777777777777777777777777777888888888877742 2234566778
Q ss_pred CCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCcc
Q 044264 282 PPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEF 350 (439)
Q Consensus 282 ~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~ 350 (439)
+++|++|++++|.....+|.++..+++|+.|++++|.+...+|. ++.+++|+.|++++|.....+|..+
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 88999999999988866688888999999999999988777775 8888999999999888665666543
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.9e-29 Score=246.05 Aligned_cols=339 Identities=16% Similarity=0.119 Sum_probs=251.6
Q ss_pred EeeCCCCCccccccCCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHh-hhhhHhhhcCCceeEEeCCcc
Q 044264 59 VEIDGREEPFIDSLGQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLT-EVLPQLFDELTCLRALDFAMF 136 (439)
Q Consensus 59 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 136 (439)
+++.......++.....++++.+.++....+ |..+.++++|++|++++|. +. ...+..|..+++|++|++++
T Consensus 15 ~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l~~L~~L~Ls~- 88 (455)
T 3v47_A 15 AICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-----PGLVIRNNTFRGLSSLIILKLDY- 88 (455)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-----TTCEECTTTTTTCTTCCEEECTT-
T ss_pred cCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCc-----ccceECcccccccccCCEEeCCC-
Confidence 3444445555555678899999999988776 6778999999999999987 33 33466789999999999999
Q ss_pred ccccccccccccccccccccccceeecCCCCCcc-CChh--HhhccCCcEeecCCCCcccccchh-hhhccccceeeccC
Q 044264 137 QMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEK-LPET--LCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRG 212 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~--i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~ 212 (439)
|.+....|..+..+++|++|++++|.++. +|.. ++.+++|++|++++|......|.. +.++++|++|++++
T Consensus 89 -----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 89 -----NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp -----CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred -----CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 77555568889999999999999999874 4444 889999999999999844444655 78999999999999
Q ss_pred ccccccCCcccccC--cccccccceeeccccccccc--------cccccCcceeeecccCCcchhccCChHHHHHh----
Q 044264 213 TESLRYLPAGIERL--TSLRRVEKFVVGRGVARSSE--------LENKKNLIDLLLYFGHGNEERKRKKDEEVLEA---- 278 (439)
Q Consensus 213 ~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~---- 278 (439)
|......|..+..+ .+|+.|++..+......... +..+++|+.|+++++...... ...+...
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~~~~~~ 239 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM----AKRFFDAIAGT 239 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH----HHHHHHHTTTC
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc----hhhhhcccccc
Confidence 98766666666655 56777777666554322221 334567777777776422100 0011110
Q ss_pred -----------------------------C--CCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-C
Q 044264 279 -----------------------------L--QPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-L 326 (439)
Q Consensus 279 -----------------------------l--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~ 326 (439)
+ ...++|++|++++|......|..+..+++|+.|++++|......+. +
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh
Confidence 0 0136899999999988887688888999999999999988776664 8
Q ss_pred CCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeeccc
Q 044264 327 GKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARC 406 (439)
Q Consensus 327 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c 406 (439)
+.+++|+.|++++|. +..++... +..+++|++|+++++. ++.+.. .....+++|++|++++|
T Consensus 320 ~~l~~L~~L~Ls~N~-l~~~~~~~-------------~~~l~~L~~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 320 WGLTHLLKLNLSQNF-LGSIDSRM-------------FENLDKLEVLDLSYNH-IRALGD---QSFLGLPNLKELALDTN 381 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEECGGG-------------GTTCTTCCEEECCSSC-CCEECT---TTTTTCTTCCEEECCSS
T ss_pred cCcccCCEEECCCCc-cCCcChhH-------------hcCcccCCEEECCCCc-ccccCh---hhccccccccEEECCCC
Confidence 899999999999997 45554322 5668999999999973 444321 22356899999999998
Q ss_pred ccccCCCCC-CCCCCCccEEEEcCCc
Q 044264 407 PTLRALPDH-LLQTTTLQKLEIWGCP 431 (439)
Q Consensus 407 ~~l~~l~~~-l~~~~~L~~L~i~~c~ 431 (439)
.++.+|.. +..+++|+.|++++|+
T Consensus 382 -~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 382 -QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccccCCHhHhccCCcccEEEccCCC
Confidence 67777654 5789999999998875
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.3e-30 Score=267.93 Aligned_cols=321 Identities=18% Similarity=0.112 Sum_probs=248.6
Q ss_pred CceeEEEEEcCCCC-CcCcccCCCCCeeEEEecCCCCChhhHhhhhhHh-hhcCCceeEEeCCcccccccccccccccc-
Q 044264 74 QNVRHSMVKLGKGA-PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQL-FDELTCLRALDFAMFQMWSWNGFIKEIPK- 150 (439)
Q Consensus 74 ~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~- 150 (439)
.+++.+.+..+... .+|..+..+++|+.|++.+|. +.+.+|.. +..+++|++|++++ |.+.+.+|.
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-----l~~~ip~~~l~~l~~L~~L~Ls~------n~l~~~~p~~ 362 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-----FSGELPMDTLLKMRGLKVLDLSF------NEFSGELPES 362 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-----EEEECCHHHHTTCTTCCEEECCS------SEEEECCCTT
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-----ccCcCCHHHHhcCCCCCEEeCcC------CccCccccHH
Confidence 66778877777664 567777778888888888775 44344433 67777777777777 433323333
Q ss_pred ------------------------cccc--ccccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccccchhhhhcc
Q 044264 151 ------------------------NIEK--LVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203 (439)
Q Consensus 151 ------------------------~~~~--l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~ 203 (439)
.+.. +++|++|++++|.++ .+|..++++++|++|++++|.....+|..++.++
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC
Confidence 3333 556777777777765 7788999999999999999986668899999999
Q ss_pred ccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCC
Q 044264 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP 283 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (439)
+|+.|++++|.....+|..+..+++|+.|++.+|...+..+..+..+++|+.|++++|.. ...++..+..++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l--------~~~~p~~~~~l~ 514 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL--------TGEIPKWIGRLE 514 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC--------CSCCCGGGGGCT
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc--------CCcCChHHhcCC
Confidence 999999999998778999999999999999999999888999999999999999999852 234567788899
Q ss_pred CccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC--------------------------------------
Q 044264 284 NLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-------------------------------------- 325 (439)
Q Consensus 284 ~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-------------------------------------- 325 (439)
+|++|++++|.....+|..+..+++|+.|++++|.+...+|.
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 999999999999876699999999999999999877654442
Q ss_pred ---------------------------------CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcce
Q 044264 326 ---------------------------------LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKT 372 (439)
Q Consensus 326 ---------------------------------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 372 (439)
++.+++|+.|++++|.....+|.. +..++.|+.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~--------------l~~l~~L~~ 660 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE--------------IGSMPYLFI 660 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG--------------GGGCTTCCE
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH--------------HhccccCCE
Confidence 233466777777777644444433 667888999
Q ss_pred eeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 373 IQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 373 L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
|+++++.--..++ ...+.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 661 L~Ls~N~l~g~ip----~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 661 LNLGHNDISGSIP----DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EECCSSCCCSCCC----GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EeCcCCccCCCCC----hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 9998874222232 233678899999999996556888888899999999999884
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2e-29 Score=255.24 Aligned_cols=330 Identities=13% Similarity=0.123 Sum_probs=232.9
Q ss_pred CCceeEEEEEcCCCCC------------------cCcccC--CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEe
Q 044264 73 GQNVRHSMVKLGKGAP------------------FPISFC--SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALD 132 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 132 (439)
..+++.+.+..+.... +|..+. ++++|++|++++|. +.+.+|..+..+++|++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-----NLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-----TCSSCCTTTTTCSSCCEEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-----CCccChHHHhcCCCCCEEE
Confidence 5788999999888877 899888 99999999999987 6778888899999999999
Q ss_pred CCccccccccc-ccc-ccccccccc------cccceeecCCCCCccCCh--hHhhccCCcEeecCCCCcccccchhhhhc
Q 044264 133 FAMFQMWSWNG-FIK-EIPKNIEKL------VHLRYLNLSRLKIEKLPE--TLCELYNLQLLNVESCQDLKELPQGFGKL 202 (439)
Q Consensus 133 l~~~~~~~~~~-~~~-~~~~~~~~l------~~L~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~l~~~i~~l 202 (439)
+++ |. +.+ .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.....+| .++.+
T Consensus 280 Ls~------n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 280 VAC------NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CTT------CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CcC------CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 998 66 555 677777766 899999999999889998 89999999999999998444888 78889
Q ss_pred cccceeeccCccccccCCcccccCcc-cccccceeecccccccccccccc--CcceeeecccCCcchhccCChHHHHHhC
Q 044264 203 INLMYLLNRGTESLRYLPAGIERLTS-LRRVEKFVVGRGVARSSELENKK--NLIDLLLYFGHGNEERKRKKDEEVLEAL 279 (439)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~l 279 (439)
++|++|++++|.. ..+|..+..+++ |++|++++|... .++..+..++ +|+.|++++|.. ....+..+
T Consensus 353 ~~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l--------~~~~p~~l 422 (636)
T 4eco_A 353 IKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI--------GSVDGKNF 422 (636)
T ss_dssp EEESEEECCSSEE-EECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT--------TTTTTCSS
T ss_pred CCCCEEECCCCcc-ccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC--------CCcchhhh
Confidence 9999999998875 478888888888 999998888776 6666666554 788888887742 12233444
Q ss_pred C-------CCCCccEEEEeeccCCccCCchh-hcccCccEEeecCCCCCCcCCC--CC-------CcCCcCeeeeccccC
Q 044264 280 Q-------PPPNLKHLGIHQYRGNNVHPHWM-MSLTDLRILTLSHCINCEHLPP--LG-------KLPSLEQLYFYSMGS 342 (439)
Q Consensus 280 ~-------~~~~L~~L~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~--~~-------~l~~L~~L~l~~~~~ 342 (439)
. .+++|++|++++|.+..+ |..+ ..+++|+.|++++|.+. .+|. +. ++++|+.|++++|.
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~- 499 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK- 499 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-
T ss_pred cccccccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-
Confidence 4 556778888877777765 5443 35777777777777665 4442 21 22377777777776
Q ss_pred eeEeCCccc--cccC----------CCCCCCCCCcCCCCcceeeccCCCCccc--cccCCCcccccCcccceeeeccccc
Q 044264 343 VKRVGDEFL--GVES----------DHGRASSSVVAFPKLKTIQFWDMYVLKE--WDYGDTIKGEIMPRLSSLCIARCPT 408 (439)
Q Consensus 343 l~~~~~~~~--~~~~----------~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~p~L~~L~i~~c~~ 408 (439)
+..++..+. .... ... .+..+..+++|+.|+++++..+.. +....+.....+++|++|++++| .
T Consensus 500 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~ 577 (636)
T 4eco_A 500 LTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-D 577 (636)
T ss_dssp CCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-C
T ss_pred CCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-c
Confidence 335554432 1100 111 233355567777777754331111 11111112245778888888887 4
Q ss_pred ccCCCCCCCCCCCccEEEEcCCc
Q 044264 409 LRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 409 l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
++.+|..+. ++|+.|++++|+
T Consensus 578 l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 578 IRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CCBCCSCCC--TTCCEEECCSCT
T ss_pred CCccCHhHh--CcCCEEECcCCC
Confidence 477776654 788888888885
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=7.9e-29 Score=255.54 Aligned_cols=332 Identities=14% Similarity=0.129 Sum_probs=232.7
Q ss_pred CCceeEEEEEcCCCCC------------------cCcccC--CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEe
Q 044264 73 GQNVRHSMVKLGKGAP------------------FPISFC--SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALD 132 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 132 (439)
..+++.+.+..+.... +|..+. ++++|+.|++++|. +.+.+|..+..+++|+.|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-----l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-----NMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-----TCCSCCGGGGGCSSCCEEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-----CCccChHHHhCCCCCCEEE
Confidence 5789999999998877 898887 99999999999987 6778888899999999999
Q ss_pred CCccccccccc-ccc-cccccccccc-------ccceeecCCCCCccCCh--hHhhccCCcEeecCCCCcccccchhhhh
Q 044264 133 FAMFQMWSWNG-FIK-EIPKNIEKLV-------HLRYLNLSRLKIEKLPE--TLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 133 l~~~~~~~~~~-~~~-~~~~~~~~l~-------~L~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
+++ |. +.+ .+|..+..+. +|++|++++|.++.+|. .++++++|++|++++|. +..+| .++.
T Consensus 522 Ls~------N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~ 593 (876)
T 4ecn_A 522 IAC------NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGT 593 (876)
T ss_dssp CTT------CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCT
T ss_pred CcC------CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcC
Confidence 999 65 444 5776666555 99999999999999998 89999999999999998 55888 7899
Q ss_pred ccccceeeccCccccccCCcccccCcc-cccccceeeccccccccccccccC--cceeeecccCCcchhccCChHHHHHh
Q 044264 202 LINLMYLLNRGTESLRYLPAGIERLTS-LRRVEKFVVGRGVARSSELENKKN--LIDLLLYFGHGNEERKRKKDEEVLEA 278 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~~~ 278 (439)
+++|+.|++++|... .+|..+..+++ |+.|+++.|... .++..+..++. |+.|++++|.... ....++..
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g-----~ip~l~~~ 666 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-----EGRNISCS 666 (876)
T ss_dssp TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT-----TSSSCSSC
T ss_pred CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC-----ccccchhh
Confidence 999999999999854 88888999998 999999998876 66666666654 8888888874221 00011111
Q ss_pred CC--CCCCccEEEEeeccCCccCCchhh-cccCccEEeecCCCCCCcCCC--CC-------CcCCcCeeeeccccCeeEe
Q 044264 279 LQ--PPPNLKHLGIHQYRGNNVHPHWMM-SLTDLRILTLSHCINCEHLPP--LG-------KLPSLEQLYFYSMGSVKRV 346 (439)
Q Consensus 279 l~--~~~~L~~L~l~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~--~~-------~l~~L~~L~l~~~~~l~~~ 346 (439)
+. ..++|+.|++++|.+..+ |..+. .+++|+.|++++|.+. .+|. +. ++++|+.|++++|. +..+
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~l 743 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSL 743 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCC
T ss_pred hccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-Cccc
Confidence 12 234777777777777755 55443 6677777777777655 3332 11 23377777777775 4455
Q ss_pred CCccc--cccC----------CCCCCCCCCcCCCCcceeeccCCCCccc--cccCCCcccccCcccceeeecccccccCC
Q 044264 347 GDEFL--GVES----------DHGRASSSVVAFPKLKTIQFWDMYVLKE--WDYGDTIKGEIMPRLSSLCIARCPTLRAL 412 (439)
Q Consensus 347 ~~~~~--~~~~----------~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~p~L~~L~i~~c~~l~~l 412 (439)
+..+. .... ..+ .+..+..+++|+.|++++++.+.. +....+.....+++|++|++++| .++.+
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~I 821 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKV 821 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCcc
Confidence 54332 1100 011 233355667777777765432111 11111112345778888888888 44777
Q ss_pred CCCCCCCCCccEEEEcCCc
Q 044264 413 PDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 413 ~~~l~~~~~L~~L~i~~c~ 431 (439)
|..+. ++|+.|+|++|+
T Consensus 822 p~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 822 DEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CSCCC--SSSCEEECCSCT
T ss_pred CHhhc--CCCCEEECCCCC
Confidence 77654 688888888886
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.9e-29 Score=255.39 Aligned_cols=312 Identities=13% Similarity=0.136 Sum_probs=245.3
Q ss_pred cCcccCCCCCeeEEEecCCCCChhhHhhh-----------------hhHhhh--cCCceeEEeCCccccccccccccccc
Q 044264 89 FPISFCSVKRLRSLLIDDNGDDEFWLTEV-----------------LPQLFD--ELTCLRALDFAMFQMWSWNGFIKEIP 149 (439)
Q Consensus 89 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~ 149 (439)
+|..+.++++|++|++++|. +.+. +|..+. .+++|++|++++ |.+.+.+|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~------n~l~~~~p 266 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-----FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN------CPNLTKLP 266 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC------CTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCc-----cccccccccccccccchhcccCchhhhhcccCCCCEEEecC------CcCCccCh
Confidence 78889999999999999998 4443 888888 999999999999 87788899
Q ss_pred cccccccccceeecCCCC-Cc--cCChhHhhc------cCCcEeecCCCCcccccch--hhhhccccceeeccCcccccc
Q 044264 150 KNIEKLVHLRYLNLSRLK-IE--KLPETLCEL------YNLQLLNVESCQDLKELPQ--GFGKLINLMYLLNRGTESLRY 218 (439)
Q Consensus 150 ~~~~~l~~L~~L~L~~~~-~~--~lp~~i~~l------~~L~~L~l~~~~~~~~l~~--~i~~l~~L~~L~l~~~~~~~~ 218 (439)
..+.++++|++|++++|. ++ .+|..++++ ++|++|++++|. +..+|. .++++++|++|++++|.....
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccc
Confidence 999999999999999998 87 599999887 999999999998 569998 899999999999999997668
Q ss_pred CCcccccCcccccccceeeccccccccccccccC-cceeeecccCCcchhccCChHHHHHhCCCCC--CccEEEEeeccC
Q 044264 219 LPAGIERLTSLRRVEKFVVGRGVARSSELENKKN-LIDLLLYFGHGNEERKRKKDEEVLEALQPPP--NLKHLGIHQYRG 295 (439)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~ 295 (439)
+| .++.+++|+.|++++|... .++..+..+++ |+.|++++|. ...++..+...+ +|++|++++|.+
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~---------l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK---------LKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC---------CSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred hh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc---------CcccchhhhhcccCccCEEECcCCcC
Confidence 88 8999999999999998877 77888999999 9999999984 224455555544 899999999999
Q ss_pred CccCCchhh-------cccCccEEeecCCCCCCcCCC--CCCcCCcCeeeeccccCeeEeCCcccccc------------
Q 044264 296 NNVHPHWMM-------SLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYSMGSVKRVGDEFLGVE------------ 354 (439)
Q Consensus 296 ~~~l~~~~~-------~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~------------ 354 (439)
....|..+. .+++|+.|++++|.+. .+|. +..+++|+.|++++|. +..++.......
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCE
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccE
Confidence 886677777 7789999999999887 5554 5678999999999998 446665443211
Q ss_pred ------CCCCCCCCCCc--CCCCcceeeccCCCCccccccCCCcccccCcccceeeecc------cccccCCCCCCCCCC
Q 044264 355 ------SDHGRASSSVV--AFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIAR------CPTLRALPDHLLQTT 420 (439)
Q Consensus 355 ------~~~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~------c~~l~~l~~~l~~~~ 420 (439)
... ..+..+. .+++|+.|+++++. ++.++. ....+++|+.|++++ |.....+|..+..++
T Consensus 493 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~----~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 493 IDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPT----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp EECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCC----GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred EECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcCh----hhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 011 1222333 66677777776652 333221 224567777777743 333456677777777
Q ss_pred CccEEEEcCCc
Q 044264 421 TLQKLEIWGCP 431 (439)
Q Consensus 421 ~L~~L~i~~c~ 431 (439)
+|+.|++++|.
T Consensus 567 ~L~~L~Ls~N~ 577 (636)
T 4eco_A 567 SLTQLQIGSND 577 (636)
T ss_dssp SCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 77777777774
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=242.00 Aligned_cols=313 Identities=18% Similarity=0.149 Sum_probs=213.5
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVH 157 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 157 (439)
.+.........+|..+. ++++.|++++|. +....+..|..+++|++|++++ +.+....|..+..+++
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~------n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNR-----IKTLNQDEFASFPHLEELELNE------NIVSAVEPGAFNNLFN 81 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSSC-----CCEECTTTTTTCTTCCEEECTT------SCCCEECTTTTTTCTT
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCCCc-----cceECHhHccCCCCCCEEECCC------CccCEeChhhhhCCcc
Confidence 34444555566666543 577888888876 5555566777888888888887 6644445667778888
Q ss_pred cceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccccee
Q 044264 158 LRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFV 236 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (439)
|++|+|++|.++.+|.. +.++++|++|++++|......|..+..+++|++|++++|......+..+..+++|+.|++..
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence 88888888887777753 57788888888888874444456677888888888888775554556677788888888887
Q ss_pred eccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecC
Q 044264 237 VGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSH 316 (439)
Q Consensus 237 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 316 (439)
|.........+..+++|+.|+++++.... .....+..+++|++|+++++.....++.......+|+.|++++
T Consensus 162 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~--------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (477)
T 2id5_A 162 CNLTSIPTEALSHLHGLIVLRLRHLNINA--------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233 (477)
T ss_dssp CCCSSCCHHHHTTCTTCCEEEEESCCCCE--------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred CcCcccChhHhcccCCCcEEeCCCCcCcE--------eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence 77766555667778888888887764221 1123566777888888887766554455555566788888888
Q ss_pred CCCCCcCC--CCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCccccc
Q 044264 317 CINCEHLP--PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEI 394 (439)
Q Consensus 317 ~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 394 (439)
|... .++ .+..+++|+.|++++|. +..++... +..+++|++|+++++. +..+.. .....
T Consensus 234 n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-------------~~~l~~L~~L~L~~n~-l~~~~~---~~~~~ 294 (477)
T 2id5_A 234 CNLT-AVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-------------LHELLRLQEIQLVGGQ-LAVVEP---YAFRG 294 (477)
T ss_dssp SCCC-SCCHHHHTTCTTCCEEECCSSC-CCEECTTS-------------CTTCTTCCEEECCSSC-CSEECT---TTBTT
T ss_pred Cccc-ccCHHHhcCccccCeeECCCCc-CCccChhh-------------ccccccCCEEECCCCc-cceECH---HHhcC
Confidence 7655 344 26777888888888777 44444322 4557788888887762 333321 12245
Q ss_pred CcccceeeecccccccCCCC-CCCCCCCccEEEEcCCc
Q 044264 395 MPRLSSLCIARCPTLRALPD-HLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 395 ~p~L~~L~i~~c~~l~~l~~-~l~~~~~L~~L~i~~c~ 431 (439)
+++|+.|++++| .++.++. .+..+++|+.|++++|+
T Consensus 295 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 295 LNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 678888888887 6666654 34667888888887765
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.5e-29 Score=258.17 Aligned_cols=290 Identities=16% Similarity=0.173 Sum_probs=173.9
Q ss_pred hhHhhhcCCceeEEeCCcccccccccccc-----------------ccccccc--cccccceeecCCCC-CccCChhHhh
Q 044264 118 LPQLFDELTCLRALDFAMFQMWSWNGFIK-----------------EIPKNIE--KLVHLRYLNLSRLK-IEKLPETLCE 177 (439)
Q Consensus 118 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~~~--~l~~L~~L~L~~~~-~~~lp~~i~~ 177 (439)
+|..+..+++|++|+|++ |.+.+ .+|..++ .+++|++|+|++|. .+.+|..+++
T Consensus 440 IP~~l~~L~~L~~L~Ls~------N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFAN------SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp ECGGGGGCTTCCEEEEES------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred hhHHHhcCCCCCEEECcC------CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 555667777777777777 55333 2666665 77777777777776 4566767777
Q ss_pred ccCCcEeecCCCC-ccc-ccchhhhhcc-------ccceeeccCccccccCCc--ccccCcccccccceeeccccccccc
Q 044264 178 LYNLQLLNVESCQ-DLK-ELPQGFGKLI-------NLMYLLNRGTESLRYLPA--GIERLTSLRRVEKFVVGRGVARSSE 246 (439)
Q Consensus 178 l~~L~~L~l~~~~-~~~-~l~~~i~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~ 246 (439)
+++|++|++++|. ... .+|..++.++ +|++|++++|... .+|. .++.+++|+.|+++.|... .++ .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 7777777777775 333 4666666665 7777777777643 6666 6677777777777766655 444 6
Q ss_pred cccccCcceeeecccCCcchhccCChHHHHHhCCCCCC-ccEEEEeeccCCccCCchhhccc--CccEEeecCCCCCCcC
Q 044264 247 LENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPN-LKHLGIHQYRGNNVHPHWMMSLT--DLRILTLSHCINCEHL 323 (439)
Q Consensus 247 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~l~~~~~~~~--~L~~L~l~~~~~~~~~ 323 (439)
++.+++|+.|++++|. ...++..+..+++ |+.|++++|.+..+ |..+...+ +|+.|++++|.+...+
T Consensus 591 ~~~L~~L~~L~Ls~N~---------l~~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQ---------IEEIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CCTTSEESEEECCSSC---------CSCCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred hcCCCcceEEECcCCc---------cccchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCcc
Confidence 6677777777776663 1234445556666 77777766666643 55554333 3666666666554433
Q ss_pred CCCC------CcCCcCeeeeccccCeeEeCCcccc-----------ccCCCCCCCCC-------CcCCCCcceeeccCCC
Q 044264 324 PPLG------KLPSLEQLYFYSMGSVKRVGDEFLG-----------VESDHGRASSS-------VVAFPKLKTIQFWDMY 379 (439)
Q Consensus 324 ~~~~------~l~~L~~L~l~~~~~l~~~~~~~~~-----------~~~~~~~~~~~-------~~~l~~L~~L~l~~~~ 379 (439)
|.+. .+++|+.|++++|. +..++..+.. .+......... ...+++|+.|++++|
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N- 738 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN- 738 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-
T ss_pred ccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-
Confidence 3211 22355555555554 2233322110 00000000000 123448888888887
Q ss_pred CccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 380 VLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 380 ~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
.++.++... ....+|+|+.|++++| .+..+|..+..+++|+.|++++|+
T Consensus 739 ~L~~lp~~l--~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 739 KLTSLSDDF--RATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCCCCCGGG--STTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCB
T ss_pred CCccchHHh--hhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCC
Confidence 454443211 0126789999999998 666788888889999999998754
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.7e-28 Score=246.56 Aligned_cols=347 Identities=14% Similarity=0.035 Sum_probs=194.0
Q ss_pred eeCCCCCccccc-cCCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccc
Q 044264 60 EIDGREEPFIDS-LGQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQ 137 (439)
Q Consensus 60 ~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 137 (439)
++.+.....++. ....++.+.+.++....+ |..+.++++|++|++++|. +....|..|..+++|++|++++
T Consensus 18 ~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~-- 90 (606)
T 3t6q_A 18 NCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-----IYWIHEDTFQSQHRLDTLVLTA-- 90 (606)
T ss_dssp ECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-----CCEECTTTTTTCTTCCEEECTT--
T ss_pred ECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-----cceeChhhccCccccCeeeCCC--
Confidence 333333333333 456677787777777666 4567777888888888776 4556666777778888888877
Q ss_pred cccccccccccccccccccccceeecCCCCCccC-ChhHhhccCCcEeecCCCCccccc--chhhhhccccceeeccCcc
Q 044264 138 MWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKEL--PQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l--~~~i~~l~~L~~L~l~~~~ 214 (439)
|.+....|..+..+++|++|++++|.++.+ |..++++++|++|++++|. +..+ |. +..+++|++|++++|.
T Consensus 91 ----n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 91 ----NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-GFPTEKLKVLDFQNNA 164 (606)
T ss_dssp ----CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-TCCCTTCCEEECCSSC
T ss_pred ----CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCccc-ccCCcccCEEEcccCc
Confidence 654444566677777777777777776665 3456667777777777766 3332 33 3336666666666665
Q ss_pred ccccCCcccccCcccc--cccceee-------------------------------------------------------
Q 044264 215 SLRYLPAGIERLTSLR--RVEKFVV------------------------------------------------------- 237 (439)
Q Consensus 215 ~~~~~~~~~~~l~~L~--~L~l~~~------------------------------------------------------- 237 (439)
.....|..++.+++|+ .|++.+|
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence 4332333344444444 3333332
Q ss_pred --------------------ccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCc
Q 044264 238 --------------------GRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN 297 (439)
Q Consensus 238 --------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 297 (439)
......+..++.+++|+.|+++++. ...++..+..+++|++|++++|....
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---------l~~lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH---------LSELPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC---------CSCCCSSCCSCTTCCEEECTTCCCSB
T ss_pred hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc---------cCCCChhhcccccCCEEECccCCcCc
Confidence 2222223335666677777776662 22344556667777777777777666
Q ss_pred cCCchhhcccCccEEeecCCCCCCcCCC--CCCcCCcCeeeeccccCeeEe--CCccccccC----------CCCCCCCC
Q 044264 298 VHPHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYSMGSVKRV--GDEFLGVES----------DHGRASSS 363 (439)
Q Consensus 298 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~----------~~~~~~~~ 363 (439)
..|..+..+++|+.|++++|.....++. +..+++|+.|++++|...... +..+..... .....+..
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence 5455666777777777777765544443 666677777777666532221 111111100 01112233
Q ss_pred CcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 364 VVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 364 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
+..+++|++|+++++. +..... ......+++|++|++++|......|..+..+++|+.|++++|+
T Consensus 396 ~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 396 FKECPQLELLDLAFTR-LKVKDA--QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTTCTTCSEEECTTCC-EECCTT--CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred hcCCccCCeEECCCCc-CCCccc--chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 4455556666665542 111100 0012345666666666663323334445556666666666663
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=9e-29 Score=232.52 Aligned_cols=302 Identities=17% Similarity=0.207 Sum_probs=244.3
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..+++++.+.++....++. +..+++|++|++++|. +.. ++. +..+++|++|++++ +. +..++ .+
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~-----i~~-~~~-~~~l~~L~~L~L~~------n~-i~~~~-~~ 106 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQ-----ITD-ISP-LSNLVKLTNLYIGT------NK-ITDIS-AL 106 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSC-----CCC-CGG-GTTCTTCCEEECCS------SC-CCCCG-GG
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCCc-----ccc-chh-hhcCCcCCEEEccC------Cc-ccCch-HH
Confidence 5779999999998888865 7889999999999997 343 333 88999999999999 76 44554 58
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRV 232 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (439)
..+++|++|++++|.++.++. +..+++|++|++++|.....++. +..+++|++|++++|.. ...+. +..+++|+.|
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSL 182 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEE
T ss_pred cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCc-CCchh-hccCCCCCEE
Confidence 999999999999999998887 88999999999999975665554 89999999999999984 44433 8899999999
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
++.+|....... +..+++|+.|+++++.... +.. +..+++|++|++++|..... +. +..+++|+.|
T Consensus 183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~---------~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L 248 (347)
T 4fmz_A 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITD---------ITP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWL 248 (347)
T ss_dssp ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC---------CGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEE
T ss_pred EccCCccccccc--ccCCCccceeecccCCCCC---------Cch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEE
Confidence 999887654333 8899999999999884322 111 67889999999999999885 44 8899999999
Q ss_pred eecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCccc
Q 044264 313 TLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKG 392 (439)
Q Consensus 313 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 392 (439)
++++|.... ++.+..+++|+.|++++|. +..++. +..+++|++|++++|. +..... ...
T Consensus 249 ~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~---------------~~~l~~L~~L~L~~n~-l~~~~~---~~l 307 (347)
T 4fmz_A 249 EIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDISV---------------LNNLSQLNSLFLNNNQ-LGNEDM---EVI 307 (347)
T ss_dssp ECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGG---------------GGGCTTCSEEECCSSC-CCGGGH---HHH
T ss_pred ECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCChh---------------hcCCCCCCEEECcCCc-CCCcCh---hHh
Confidence 999997654 5668899999999999996 444421 5678999999999984 333221 122
Q ss_pred ccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 393 EIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 393 ~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
..+|+|++|++++|+ ++.++. +..+++|+.|++++|+
T Consensus 308 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp HTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred hccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 468999999999995 777655 8889999999999995
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.8e-28 Score=240.17 Aligned_cols=332 Identities=18% Similarity=0.120 Sum_probs=214.3
Q ss_pred cCCceeEEEEEcCCCCCcC-cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGAPFP-ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
...+++++.+.++....++ ..+..+++|++|++++|. +....|..|..+++|++|++++ |. +..+|.
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~------N~-l~~lp~ 86 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR-----IQYLDISVFKFNQELEYLDLSH------NK-LVKISC 86 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-----CCEEEGGGGTTCTTCCEEECCS------SC-CCEEEC
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCc-----cCCcChHHhhcccCCCEEecCC------Cc-eeecCc
Confidence 3478999999999887776 578899999999999987 6677788899999999999999 77 556776
Q ss_pred ccccccccceeecCCCCCcc--CChhHhhccCCcEeecCCCCcccccchhhhhcccc--ceeeccCccc--cccCCcccc
Q 044264 151 NIEKLVHLRYLNLSRLKIEK--LPETLCELYNLQLLNVESCQDLKELPQGFGKLINL--MYLLNRGTES--LRYLPAGIE 224 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L--~~L~l~~~~~--~~~~~~~~~ 224 (439)
. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..+..+++| +.|++++|.. ....|..+.
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccc
Confidence 5 89999999999999875 57889999999999999987 333 346677777 8888877765 333333332
Q ss_pred c--------------------------Ccccc------------------------------------------------
Q 044264 225 R--------------------------LTSLR------------------------------------------------ 230 (439)
Q Consensus 225 ~--------------------------l~~L~------------------------------------------------ 230 (439)
. +++|+
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 2 33333
Q ss_pred ---------cccceeecccccccccc-----ccccCcceeeecccCCcchhccCChHHHHHh------------------
Q 044264 231 ---------RVEKFVVGRGVARSSEL-----ENKKNLIDLLLYFGHGNEERKRKKDEEVLEA------------------ 278 (439)
Q Consensus 231 ---------~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~------------------ 278 (439)
+|++.+|...+..+..+ +.+++|+.++++.+.... ....+...
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~-----p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF-----PQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCS-----CTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceec-----chhhhhcccccCceeEEEcCCCcccc
Confidence 33333333333444444 455555555554442100 00111111
Q ss_pred ---CCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCC--cCCC-CCCcCCcCeeeeccccCeeEeCCcccc
Q 044264 279 ---LQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCE--HLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLG 352 (439)
Q Consensus 279 ---l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~ 352 (439)
...+++|++|++++|.....+|.++..+++|+.|++++|.... .+|. ++.+++|+.|++++|.....++.....
T Consensus 317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 1466777777777777766446667777777777777776654 2332 566777777777777633324432110
Q ss_pred c-cCCC-------CCCCCCCcCC-CCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCC-CCCCCCc
Q 044264 353 V-ESDH-------GRASSSVVAF-PKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDH-LLQTTTL 422 (439)
Q Consensus 353 ~-~~~~-------~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~-l~~~~~L 422 (439)
. .... .........+ ++|+.|+++++ .++.++. ....+++|++|++++| .++.+|.. +..+++|
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 470 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPK----QVVKLEALQELNVASN-QLKSVPDGIFDRLTSL 470 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCG----GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred cCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccch----hhhcCCCCCEEECCCC-cCCccCHHHhccCCcc
Confidence 0 0000 0000001112 56777777665 3443332 1236788999999998 67788775 7788899
Q ss_pred cEEEEcCCc
Q 044264 423 QKLEIWGCP 431 (439)
Q Consensus 423 ~~L~i~~c~ 431 (439)
+.|++++|+
T Consensus 471 ~~L~l~~N~ 479 (520)
T 2z7x_B 471 QKIWLHTNP 479 (520)
T ss_dssp CEEECCSSC
T ss_pred cEEECcCCC
Confidence 999998875
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=5e-28 Score=231.12 Aligned_cols=304 Identities=17% Similarity=0.128 Sum_probs=238.6
Q ss_pred CCceeEEEEEcCCCCCcCcc-cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPIS-FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
..+++.+.+.+.....+|.. +..+++|++|++.++. +....+..|..+++|++|++++ +.+....|..
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~ 112 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-----IEEIDTYAFAYAHTIQKLYMGF------NAIRYLPPHV 112 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCS------SCCCCCCTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-----ccccChhhccCCCCcCEEECCC------CCCCcCCHHH
Confidence 46788899988888888765 4678899999999987 5566666788999999999998 7744445566
Q ss_pred cccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLR 230 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (439)
+..+++|++|++++|.++.+|.. ++++++|++|++++|......|..+..+++|++|++++|.. ..+ .+..+++|+
T Consensus 113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~--~~~~l~~L~ 189 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THV--DLSLIPSLF 189 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBC--CGGGCTTCS
T ss_pred hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Ccc--ccccccccc
Confidence 88899999999999999988876 48899999999999884333455688899999999998874 333 356788899
Q ss_pred cccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCcc
Q 044264 231 RVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLR 310 (439)
Q Consensus 231 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 310 (439)
.|++..+... .+...++|+.|+++++.... ++ ...+++|+.|++++|.... +.++..+++|+
T Consensus 190 ~L~l~~n~l~-----~~~~~~~L~~L~l~~n~l~~---------~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~ 251 (390)
T 3o6n_A 190 HANVSYNLLS-----TLAIPIAVEELDASHNSINV---------VR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLV 251 (390)
T ss_dssp EEECCSSCCS-----EEECCSSCSEEECCSSCCCE---------EE--CCCCSSCCEEECCSSCCCC--CGGGGGCTTCS
T ss_pred eeeccccccc-----ccCCCCcceEEECCCCeeee---------cc--ccccccccEEECCCCCCcc--cHHHcCCCCcc
Confidence 8888876554 24455689999998884322 11 1335799999999999988 56888999999
Q ss_pred EEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCC
Q 044264 311 ILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDT 389 (439)
Q Consensus 311 ~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 389 (439)
.|++++|......+. +..+++|+.|++++|. +..++.. ...+|+|++|+++++ .+..++..
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------------~~~l~~L~~L~L~~n-~l~~~~~~-- 313 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY--------------GQPIPTLKVLDLSHN-HLLHVERN-- 313 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS--------------SSCCTTCCEEECCSS-CCCCCGGG--
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc--------------cCCCCCCCEEECCCC-cceecCcc--
Confidence 999999988766554 8899999999999987 5555432 456899999999998 45554422
Q ss_pred cccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 390 IKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 390 ~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
...+++|++|++++| .++.++ +..+++|+.|++++|+
T Consensus 314 --~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 314 --QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp --HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred --ccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 256899999999999 577775 6789999999999986
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.4e-27 Score=238.91 Aligned_cols=345 Identities=17% Similarity=0.125 Sum_probs=200.2
Q ss_pred EEeeCCCCCccccc-cCCceeEEEEEcCCCCCcC-cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCc
Q 044264 58 TVEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFP-ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAM 135 (439)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 135 (439)
..+..+.....++. ....++.+.+.++....++ ..+.++++|++|++++|. +....|..|..+++|++|++++
T Consensus 35 ~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-----IRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp EEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-----CCEECTTTTTTCTTCCEEECTT
T ss_pred EEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-----CCcCCHHHhCCCCCCCEEECCC
Confidence 34444444444443 4577888888888887775 477888888888888887 5666677788888888888888
Q ss_pred cccccccccccccccccccccccceeecCCCCCccCC--hhHhhccCCcEeecCCCCcccccchhhhhcccc--ceeecc
Q 044264 136 FQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP--ETLCELYNLQLLNVESCQDLKELPQGFGKLINL--MYLLNR 211 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L--~~L~l~ 211 (439)
|. +..+|.. .+++|++|++++|.++.+| ..++++++|++|++++|. +.. ..+..+++| ++|+++
T Consensus 110 ------N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 110 ------NR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLD 177 (562)
T ss_dssp ------SC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEE
T ss_pred ------Cc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEee
Confidence 66 4567765 7888888888888887654 678888888888888877 332 234555555 777777
Q ss_pred Cccc--cccCCccccc--------------------------Cc------------------------------------
Q 044264 212 GTES--LRYLPAGIER--------------------------LT------------------------------------ 227 (439)
Q Consensus 212 ~~~~--~~~~~~~~~~--------------------------l~------------------------------------ 227 (439)
+|.. ....|..+.. ++
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 7764 3333333322 12
Q ss_pred -------------------ccccccceeecccccccccc-----ccccCcceeeecccCCcchhccCCh-HHHHHh----
Q 044264 228 -------------------SLRRVEKFVVGRGVARSSEL-----ENKKNLIDLLLYFGHGNEERKRKKD-EEVLEA---- 278 (439)
Q Consensus 228 -------------------~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~---- 278 (439)
+|++|++.+|...+..+..+ +.++.|+.+++..+... .. ..+...
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~------~p~~~~~~~~~~~ 331 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL------FSKEALYSVFAEM 331 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCS------SCHHHHHHHHHTC
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceee------cChhhhhhhhccC
Confidence 34444444444433333333 22222222221111100 00 000000
Q ss_pred -----------------CCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCc--CC-CCCCcCCcCeeeec
Q 044264 279 -----------------LQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEH--LP-PLGKLPSLEQLYFY 338 (439)
Q Consensus 279 -----------------l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~-~~~~l~~L~~L~l~ 338 (439)
...+++|++|++++|......|.++..+++|+.|++++|..... +| .++.+++|+.|+++
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 14556666666666666554455566666666666666654431 11 25566666666666
Q ss_pred cccCeeEeCCccccc-cCCC-------CCCCCCCcCC-CCcceeeccCCCCccccccCCCcccccCcccceeeecccccc
Q 044264 339 SMGSVKRVGDEFLGV-ESDH-------GRASSSVVAF-PKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTL 409 (439)
Q Consensus 339 ~~~~l~~~~~~~~~~-~~~~-------~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l 409 (439)
+|.....++...... .... .........+ ++|++|+++++ .++.++... ..+++|++|++++| .+
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~----~~l~~L~~L~L~~N-~l 485 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDV----THLQALQELNVASN-QL 485 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTT----TSSCCCSEEECCSS-CC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhh----cCCCCCCEEECCCC-CC
Confidence 665332233321100 0000 0000001223 57777777776 455443222 36788888888888 67
Q ss_pred cCCCCC-CCCCCCccEEEEcCCc
Q 044264 410 RALPDH-LLQTTTLQKLEIWGCP 431 (439)
Q Consensus 410 ~~l~~~-l~~~~~L~~L~i~~c~ 431 (439)
+.+|.. +..+++|+.|++++|+
T Consensus 486 ~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 486 KSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCHHHHhcCCCCCEEEecCCC
Confidence 788776 7778888888888875
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=6.4e-28 Score=243.82 Aligned_cols=352 Identities=14% Similarity=0.083 Sum_probs=227.1
Q ss_pred EEeeCCCCCccccc-cCCceeEEEEEcCCCCCcCc-ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCc
Q 044264 58 TVEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFPI-SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAM 135 (439)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 135 (439)
.+++.+.....++. ....++.+.+.++....++. .+.++++|++|++++|. +....|..|..+++|++|++++
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-----IETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp EEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTT
T ss_pred ceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-----ccccCHHHhhchhhcCEeECCC
Confidence 34555555544444 56789999999888877755 78889999999999987 5666677889999999999999
Q ss_pred cccccccccccccccccccccccceeecCCCCCccCC-hhHhhccCCcEeecCCCCccc-ccchhhhhccccceeeccCc
Q 044264 136 FQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLK-ELPQGFGKLINLMYLLNRGT 213 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~l~~~i~~l~~L~~L~l~~~ 213 (439)
|.+....|..++.+++|++|++++|.++.++ ..++++++|++|++++|.... .+|..++++++|++|++++|
T Consensus 90 ------n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 90 ------NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp ------CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred ------CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 7755555888999999999999999988776 578899999999999998433 57888999999999999998
Q ss_pred cccccCCcccccCcccc----cccceeeccccccccccccccCcceeeecccCCcch-----------------------
Q 044264 214 ESLRYLPAGIERLTSLR----RVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEE----------------------- 266 (439)
Q Consensus 214 ~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----------------------- 266 (439)
......|..++.+++|+ .|++..|......+..+... +|+.|+++++.....
T Consensus 164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred cceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 76554555566666554 46666665543333333322 566666655532100
Q ss_pred ---------------------------hccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCC
Q 044264 267 ---------------------------RKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCIN 319 (439)
Q Consensus 267 ---------------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 319 (439)
........++. +..+++|+.|++.++..... | ++..+++|+.|++++|..
T Consensus 243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL 319 (606)
T ss_dssp TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC
T ss_pred cCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccC
Confidence 00000111111 44556677777777666554 4 566677777777777766
Q ss_pred CCcCCCCCCcCCcCeeeeccccCeeEeCCccccc--------cCCCCC--CCCCCcCCCCcceeeccCCCCccccccCCC
Q 044264 320 CEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGV--------ESDHGR--ASSSVVAFPKLKTIQFWDMYVLKEWDYGDT 389 (439)
Q Consensus 320 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--------~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 389 (439)
..+|.+ .+++|+.|++++|..+..++...... +..... .+..+..+++|++|+++++. +..++
T Consensus 320 -~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~---- 392 (606)
T 3vq2_A 320 -KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS---- 392 (606)
T ss_dssp -SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC----
T ss_pred -cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccch----
Confidence 555555 66677777776665444331100000 000000 01123456666666666653 33332
Q ss_pred cccccCcccceeeecccccccCCC-CCCCCCCCccEEEEcCCc
Q 044264 390 IKGEIMPRLSSLCIARCPTLRALP-DHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 390 ~~~~~~p~L~~L~i~~c~~l~~l~-~~l~~~~~L~~L~i~~c~ 431 (439)
.....+++|++|++++|......| ..+..+++|+.|++++|.
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 122467888888888884333334 467778888888888875
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=7.7e-28 Score=234.70 Aligned_cols=321 Identities=17% Similarity=0.138 Sum_probs=243.5
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccc-cccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI-PKNIEKLV 156 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~l~ 156 (439)
.+.........+|. + .+++++|++++|. +....|..|..+++|++|++++ +.+...+ +..+..++
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~L~~------n~~~~~i~~~~~~~l~ 79 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNS-----IAELNETSFSRLQDLQFLKVEQ------QTPGLVIRNNTFRGLS 79 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSC-----CCEECTTTTSSCTTCCEEECCC------CSTTCEECTTTTTTCT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCc-----cCcCChhHhccCccccEEECcC------CcccceECcccccccc
Confidence 34555566677776 3 3789999999998 5667788899999999999999 7644344 56689999
Q ss_pred ccceeecCCCCCccC-ChhHhhccCCcEeecCCCCcccccchh--hhhccccceeeccCccccccCCcc-cccCcccccc
Q 044264 157 HLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQG--FGKLINLMYLLNRGTESLRYLPAG-IERLTSLRRV 232 (439)
Q Consensus 157 ~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~--i~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L 232 (439)
+|++|++++|.++.+ |..++++++|++|++++|......|.. ++.+++|++|++++|......|.. +..+++|++|
T Consensus 80 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 999999999998866 778999999999999999844445554 889999999999999866555665 8899999999
Q ss_pred cceeeccccccccccccc--cCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhh------
Q 044264 233 EKFVVGRGVARSSELENK--KNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM------ 304 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~------ 304 (439)
++++|......+..+..+ ++|+.|+++.+.................+..+++|++|++++|......|..+.
T Consensus 160 ~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239 (455)
T ss_dssp ECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC
T ss_pred eCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc
Confidence 999999888777778776 689999998885332111112223334455678899999998877543233222
Q ss_pred ---------------------------------cccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCcc
Q 044264 305 ---------------------------------SLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEF 350 (439)
Q Consensus 305 ---------------------------------~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~ 350 (439)
..++|+.|++++|......+. ++.+++|+.|++++|. +..++..
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~- 317 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDN- 317 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT-
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChh-
Confidence 125788888888877766665 7888999999999887 4444322
Q ss_pred ccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCC-CCCCCCCCCccEEEEcC
Q 044264 351 LGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL-PDHLLQTTTLQKLEIWG 429 (439)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l-~~~l~~~~~L~~L~i~~ 429 (439)
.+..+++|++|+++++. +..+.. .....+++|++|++++| .++.+ |..+..+++|+.|++++
T Consensus 318 ------------~~~~l~~L~~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 318 ------------AFWGLTHLLKLNLSQNF-LGSIDS---RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp ------------TTTTCTTCCEEECCSSC-CCEECG---GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred ------------HhcCcccCCEEECCCCc-cCCcCh---hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCC
Confidence 25678999999999873 444321 12256899999999999 45554 77888999999999999
Q ss_pred Cc
Q 044264 430 CP 431 (439)
Q Consensus 430 c~ 431 (439)
|.
T Consensus 381 N~ 382 (455)
T 3v47_A 381 NQ 382 (455)
T ss_dssp SC
T ss_pred Cc
Confidence 84
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.3e-28 Score=240.49 Aligned_cols=328 Identities=15% Similarity=0.079 Sum_probs=220.5
Q ss_pred eEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccc
Q 044264 77 RHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156 (439)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 156 (439)
+.+.+.+.....+|..+. +++++|++++|. +....|..|..+++|++|++++ |.+....|..+..++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNY-----ISELWTSDILSLSKLRILIISH------NRIQYLDISVFKFNQ 69 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSC-----CCCCCHHHHTTCTTCCEEECCS------SCCCEEEGGGGTTCT
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCc-----ccccChhhccccccccEEecCC------CccCCcChHHhhccc
Confidence 466777788888888766 899999999998 6667778899999999999999 775555678899999
Q ss_pred ccceeecCCCCCccCChhHhhccCCcEeecCCCCccc-ccchhhhhccccceeeccCccccccCCcccccCccc--cccc
Q 044264 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLK-ELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSL--RRVE 233 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~ 233 (439)
+|++|++++|.++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.... ..+..+++| +.|+
T Consensus 70 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 70 ELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVL 144 (520)
T ss_dssp TCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEE
T ss_pred CCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEE
Confidence 999999999999999977 89999999999998443 467899999999999999988543 356677777 9999
Q ss_pred ceeecc--ccccccccc--------------------------cccCcceeeecccC-----------------------
Q 044264 234 KFVVGR--GVARSSELE--------------------------NKKNLIDLLLYFGH----------------------- 262 (439)
Q Consensus 234 l~~~~~--~~~~~~~l~--------------------------~l~~L~~L~l~~~~----------------------- 262 (439)
+..|.. ....+..+. .+++|+.|+++++.
T Consensus 145 l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~ 224 (520)
T 2z7x_B 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224 (520)
T ss_dssp EEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCE
T ss_pred eecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhh
Confidence 988876 333333332 34455555555441
Q ss_pred -------Ccchhcc-------------------CChHHHHHhC-----CCCCCccEEEEeeccCCccCC-ch--------
Q 044264 263 -------GNEERKR-------------------KKDEEVLEAL-----QPPPNLKHLGIHQYRGNNVHP-HW-------- 302 (439)
Q Consensus 263 -------~~~~~~~-------------------~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~l~-~~-------- 302 (439)
....... .....++..+ ..+++|+.++++++.. .+ | .+
T Consensus 225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~-p~~~~~~~~~~~ 302 (520)
T 2z7x_B 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GF-PQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CS-CTHHHHHHHHTC
T ss_pred ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ec-chhhhhcccccC
Confidence 0000000 0000111122 3333333333333333 11 2 11
Q ss_pred -----------------hhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCee--EeCCccccc---------
Q 044264 303 -----------------MMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVK--RVGDEFLGV--------- 353 (439)
Q Consensus 303 -----------------~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~--~~~~~~~~~--------- 353 (439)
...+++|+.|++++|......|. ++.+++|+.|++++|.... .++..+...
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 15778999999999988876664 8999999999999998332 222111110
Q ss_pred -cCCCC-CCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 354 -ESDHG-RASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 354 -~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
+.... .....+..+++|++|+++++.--..++ ....++|+.|++++| .++.+|..+..+++|+.|++++|+
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF------RCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG------GSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchh------hhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc
Confidence 11111 111123445566666666553111111 011268999999998 677898888899999999999984
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=239.77 Aligned_cols=172 Identities=16% Similarity=0.067 Sum_probs=96.2
Q ss_pred ccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCC--C
Q 044264 248 ENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLP--P 325 (439)
Q Consensus 248 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~ 325 (439)
..+++|+.|+++++..... ...+..+..+++|++|++++|..... +..+..+++|+.|++++|......+ .
T Consensus 344 ~~~~~L~~L~l~~n~l~~~------~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFK------GCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CBCTTCCEEECCSSCCBEE------EEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccCCCCCEEeCcCCccCcc------ccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhh
Confidence 3556677777766632210 00122344566777777776665554 3335566666666666665544433 2
Q ss_pred CCCcCCcCeeeeccccCeeEeCCccccccC----------CC-CCCCCCCcCCCCcceeeccCCCCccccccCCCccccc
Q 044264 326 LGKLPSLEQLYFYSMGSVKRVGDEFLGVES----------DH-GRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEI 394 (439)
Q Consensus 326 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~----------~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 394 (439)
+..+++|+.|++++|......+..+..... .. +..+..+..+++|++|++++|. ++.+.. .....
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~ 492 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP---TAFNS 492 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT---TTTTT
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCCh---hhhhc
Confidence 555666666666666533222221111100 00 0122336667888888888763 333311 12246
Q ss_pred CcccceeeecccccccCCC-CCCCCCCCccEEEEcCCc
Q 044264 395 MPRLSSLCIARCPTLRALP-DHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 395 ~p~L~~L~i~~c~~l~~l~-~~l~~~~~L~~L~i~~c~ 431 (439)
+++|++|++++| .++.+| ..+..+++|+.|++++|+
T Consensus 493 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 493 LSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 788999999988 566654 456788999999998864
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=3.5e-27 Score=238.42 Aligned_cols=251 Identities=16% Similarity=0.121 Sum_probs=108.8
Q ss_pred cceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccccee
Q 044264 158 LRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFV 236 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (439)
|+.|++++|.++.++. .++.+++|++|++++|. +..+|..+..+++|++|++++|......|..+..+++|+.|++.+
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 3344444444433332 24445555555555554 444554455555555555555543333333444555555555554
Q ss_pred eccccccc-cccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeec
Q 044264 237 VGRGVARS-SELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLS 315 (439)
Q Consensus 237 ~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~ 315 (439)
|......+ ..+..+++|+.|+++++.... ....+..+..+++|++|++++|......|..+..+++|+.|+++
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIET------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCE------EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred CCcccccchhhhhccCcCCEEECCCCcccc------ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 44332222 224455555555555442111 00002234445555555555554444334444455555555555
Q ss_pred CCCCCCcCCC--CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccc
Q 044264 316 HCINCEHLPP--LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGE 393 (439)
Q Consensus 316 ~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 393 (439)
+|......+. +..+++|+.|++++|.... .+ +..+..+++|++|+++++. +............
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-------------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SS-------------EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQ 473 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBT-TC-------------TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGG
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCC-cC-------------HHHHhCCCCCCEEECCCCC-CCccccccchhhc
Confidence 5544333221 4445555555555544211 11 1113345555555555542 1111111111123
Q ss_pred cCcccceeeecccccccCCCCCCCCCCCccEEEEcCC
Q 044264 394 IMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 394 ~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c 430 (439)
.+++|+.|++++|......|..+..+++|+.|++++|
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 4455555555555222222344455555555555555
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=3.2e-27 Score=236.33 Aligned_cols=328 Identities=14% Similarity=0.116 Sum_probs=228.5
Q ss_pred ceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccc
Q 044264 75 NVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEK 154 (439)
Q Consensus 75 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 154 (439)
..+.+.+.+.....+|..+. +++++|++++|. +....+..|..+++|++|++++ |.+....|..+..
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~-----i~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~ 98 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNS-----ISELRMPDISFLSELRVLRLSH------NRIRSLDFHVFLF 98 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSC-----CCCCCGGGTTTCTTCCEEECCS------CCCCEECTTTTTT
T ss_pred CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCC-----ccccChhhhccCCCccEEECCC------CCCCcCCHHHhCC
Confidence 34788888888888998764 899999999998 6677777899999999999999 7755555788999
Q ss_pred ccccceeecCCCCCccCChhHhhccCCcEeecCCCCccccc--chhhhhccccceeeccCccccccCCcccccCccc--c
Q 044264 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKEL--PQGFGKLINLMYLLNRGTESLRYLPAGIERLTSL--R 230 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l--~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~ 230 (439)
+++|++|++++|.++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.... ..+..+++| +
T Consensus 99 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~ 172 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLS 172 (562)
T ss_dssp CTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEE
T ss_pred CCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---Cchhhhhhceee
Confidence 99999999999999999987 89999999999998 5554 5789999999999999987543 234555555 9
Q ss_pred cccceeecc--ccccccccc--------------------------cccCcceeeecccCCcchh---------------
Q 044264 231 RVEKFVVGR--GVARSSELE--------------------------NKKNLIDLLLYFGHGNEER--------------- 267 (439)
Q Consensus 231 ~L~l~~~~~--~~~~~~~l~--------------------------~l~~L~~L~l~~~~~~~~~--------------- 267 (439)
.|++..|.. ....+..+. .+++|+.++++.+......
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 999988876 333333333 3456666666654200000
Q ss_pred ---------ccCChHHHHHhCCCCCCccEEEEeeccCCccCCchh-----------------------------------
Q 044264 268 ---------KRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWM----------------------------------- 303 (439)
Q Consensus 268 ---------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~----------------------------------- 303 (439)
.......++..+. .++|++|++++|.....+|.++
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred EEEecCCcCcHHHHHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence 0000111111111 2367777777766553223332
Q ss_pred ------------------hcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCC---ccccc--------
Q 044264 304 ------------------MSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGD---EFLGV-------- 353 (439)
Q Consensus 304 ------------------~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~---~~~~~-------- 353 (439)
..+++|+.|++++|......|. ++.+++|+.|++++|. ++.++. .+...
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEEC
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEEC
Confidence 5678999999999988876665 8999999999999987 444331 11110
Q ss_pred --cCCCC-CCCCCCcCCCCcceeeccCCCCccccccCCCcccccC-cccceeeecccccccCCCCCCCCCCCccEEEEcC
Q 044264 354 --ESDHG-RASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIM-PRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWG 429 (439)
Q Consensus 354 --~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~ 429 (439)
+.... .....+..+++|++|+++++. ++... ...+ ++|+.|++++| .++.+|..+..+++|+.|++++
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~------~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSV------FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGG------GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCC-CCcch------hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC
Confidence 11111 112224455666666666653 21111 1223 69999999999 7889998888999999999999
Q ss_pred Cc
Q 044264 430 CP 431 (439)
Q Consensus 430 c~ 431 (439)
|.
T Consensus 483 N~ 484 (562)
T 3a79_B 483 NQ 484 (562)
T ss_dssp SC
T ss_pred CC
Confidence 84
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.8e-27 Score=238.08 Aligned_cols=304 Identities=17% Similarity=0.128 Sum_probs=234.9
Q ss_pred CCceeEEEEEcCCCCCcCcc-cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPIS-FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
...++.+.+.++....+|.. +..+++|+.|++.+|. +....+..|..+++|++|++++ |.+....|..
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~ 118 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-----IEEIDTYAFAYAHTIQKLYMGF------NAIRYLPPHV 118 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCS------SCCCCCCTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-----CCCCChHHhcCCCCCCEEECCC------CcCCCCCHHH
Confidence 35677888888777777765 4568889999999887 5666666788889999999988 7744545556
Q ss_pred cccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLR 230 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (439)
++.+++|++|++++|.++.+|.. ++++++|++|++++|......|..++.+++|++|++++|.. ..+ .++.+++|+
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~--~~~~l~~L~ 195 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THV--DLSLIPSLF 195 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBC--CGGGCTTCS
T ss_pred HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCc--Chhhhhhhh
Confidence 78889999999999998888876 48889999999998884444455688899999999988874 333 256778888
Q ss_pred cccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCcc
Q 044264 231 RVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLR 310 (439)
Q Consensus 231 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 310 (439)
.|++..|... .+...++|+.|+++++.... ++ ...+++|+.|++++|.+.. +.++..+++|+
T Consensus 196 ~L~l~~n~l~-----~l~~~~~L~~L~ls~n~l~~---------~~--~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~ 257 (597)
T 3oja_B 196 HANVSYNLLS-----TLAIPIAVEELDASHNSINV---------VR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLV 257 (597)
T ss_dssp EEECCSSCCS-----EEECCTTCSEEECCSSCCCE---------EE--CSCCSCCCEEECCSSCCCC--CGGGGGCTTCS
T ss_pred hhhcccCccc-----cccCCchhheeeccCCcccc---------cc--cccCCCCCEEECCCCCCCC--ChhhccCCCCC
Confidence 8888776554 34556689999998884322 11 1224689999999999988 77889999999
Q ss_pred EEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCC
Q 044264 311 ILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDT 389 (439)
Q Consensus 311 ~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 389 (439)
.|++++|.+....|. ++.+++|+.|++++|. +..++.. ...+|+|+.|++++|. +..++..
T Consensus 258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~--------------~~~l~~L~~L~Ls~N~-l~~i~~~-- 319 (597)
T 3oja_B 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY--------------GQPIPTLKVLDLSHNH-LLHVERN-- 319 (597)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS--------------SSCCTTCCEEECCSSC-CCCCGGG--
T ss_pred EEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc--------------cccCCCCcEEECCCCC-CCccCcc--
Confidence 999999988776664 8899999999999987 5555432 4568999999999974 4444322
Q ss_pred cccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 390 IKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 390 ~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
...+++|+.|++++| .+..++ +..+++|+.|++++|+
T Consensus 320 --~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 320 --QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp --HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred --cccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 256899999999999 566665 6779999999999986
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=242.08 Aligned_cols=341 Identities=15% Similarity=0.075 Sum_probs=235.8
Q ss_pred EEEeeCCCCCccccccCCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCc
Q 044264 57 FTVEIDGREEPFIDSLGQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAM 135 (439)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 135 (439)
...++.......++.....++.+.+..+.+..+ +..+.++++|++|++++|.. .....|..|..+++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~----~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT----PLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC----CCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC----ccccCHHHhcCCCCCCEEECCC
Confidence 345566666666666789999999999988766 67889999999999999851 2334477899999999999999
Q ss_pred cccccccccccccccccccccccceeecCCCCCcc-CChh--HhhccCCcEeecCCCCccccc-chhhhhccccceeecc
Q 044264 136 FQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEK-LPET--LCELYNLQLLNVESCQDLKEL-PQGFGKLINLMYLLNR 211 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~--i~~l~~L~~L~l~~~~~~~~l-~~~i~~l~~L~~L~l~ 211 (439)
|.+....|..+..+++|++|++++|.++. +|.. ++++++|++|++++|...... +..++++++|++|+++
T Consensus 83 ------N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 83 ------SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp ------CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred ------CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 87556668899999999999999999874 5554 889999999999999844333 3578999999999999
Q ss_pred CccccccCCcccccC--cccccccceeeccccccccccccccC------cceeeecccCCcchhccCC------------
Q 044264 212 GTESLRYLPAGIERL--TSLRRVEKFVVGRGVARSSELENKKN------LIDLLLYFGHGNEERKRKK------------ 271 (439)
Q Consensus 212 ~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~------------ 271 (439)
+|......+..+..+ ++|+.|++..|......+..++.+++ |+.|+++++..........
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 998766677777776 88999999988887777766666665 8888888773211000000
Q ss_pred ----------------hHHHHHhCCC--CCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCc
Q 044264 272 ----------------DEEVLEALQP--PPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSL 332 (439)
Q Consensus 272 ----------------~~~~~~~l~~--~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L 332 (439)
.......+.. .++|+.|++++|......+..+..+++|+.|++++|......+. +..+++|
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 0000111111 25778888877777666566677777888888887776655553 6777788
Q ss_pred CeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCC
Q 044264 333 EQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL 412 (439)
Q Consensus 333 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l 412 (439)
+.|++++|. +..+.. ..+..+++|+.|+++++ .+..+... ....+++|+.|++++| .++.+
T Consensus 317 ~~L~Ls~N~-l~~~~~-------------~~~~~l~~L~~L~L~~N-~i~~~~~~---~~~~l~~L~~L~Ls~N-~l~~i 377 (844)
T 3j0a_A 317 QVLNLSYNL-LGELYS-------------SNFYGLPKVAYIDLQKN-HIAIIQDQ---TFKFLEKLQTLDLRDN-ALTTI 377 (844)
T ss_dssp CEEEEESCC-CSCCCS-------------CSCSSCTTCCEEECCSC-CCCCCCSS---CSCSCCCCCEEEEETC-CSCCC
T ss_pred CEEECCCCC-CCccCH-------------HHhcCCCCCCEEECCCC-CCCccChh---hhcCCCCCCEEECCCC-CCCcc
Confidence 888887776 332221 11445666777777665 23332211 1234566666666666 34443
Q ss_pred CCCCCCCCCccEEEEcCC
Q 044264 413 PDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 413 ~~~l~~~~~L~~L~i~~c 430 (439)
+. +++|+.|++++|
T Consensus 378 ~~----~~~L~~L~l~~N 391 (844)
T 3j0a_A 378 HF----IPSIPDIFLSGN 391 (844)
T ss_dssp SS----CCSCSEEEEESC
T ss_pred cC----CCCcchhccCCC
Confidence 32 455555555544
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=9.9e-27 Score=232.30 Aligned_cols=330 Identities=19% Similarity=0.206 Sum_probs=199.6
Q ss_pred CCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
...++++.+.++....+ |..+.++++|++|++++|. +....|..|..+++|++|++++ |.+....+..
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~ 93 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-----INTIEGDAFYSLGSLEHLDLSD------NHLSSLSSSW 93 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTT------SCCCSCCHHH
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-----cCccChhhccccccCCEEECCC------CccCccCHHH
Confidence 35677777776666555 3456667777777777766 4455555666777777777776 5533333344
Q ss_pred cccccccceeecCCCCCcc--CChhHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccccCCcccccC--
Q 044264 152 IEKLVHLRYLNLSRLKIEK--LPETLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLRYLPAGIERL-- 226 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l-- 226 (439)
++.+++|++|++++|.++. .|..++++++|++|++++|.....+| ..++.+++|++|++++|......|..++.+
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 6667777777777777653 34556667777777776665444444 356666666666666665444344444333
Q ss_pred ----------------------cccccccceeeccccc------------------------------------------
Q 044264 227 ----------------------TSLRRVEKFVVGRGVA------------------------------------------ 242 (439)
Q Consensus 227 ----------------------~~L~~L~l~~~~~~~~------------------------------------------ 242 (439)
++|+.|++.+|...+.
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 3333333333322110
Q ss_pred -----------------------------------------------------------------------ccccc-ccc
Q 044264 243 -----------------------------------------------------------------------RSSEL-ENK 250 (439)
Q Consensus 243 -----------------------------------------------------------------------~~~~l-~~l 250 (439)
++..+ ..+
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 01111 234
Q ss_pred cCcceeeecccCCcchhccCChHHH---HHhCCCCCCccEEEEeeccCCccCC---chhhcccCccEEeecCCCCCCcCC
Q 044264 251 KNLIDLLLYFGHGNEERKRKKDEEV---LEALQPPPNLKHLGIHQYRGNNVHP---HWMMSLTDLRILTLSHCINCEHLP 324 (439)
Q Consensus 251 ~~L~~L~l~~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~ 324 (439)
++|+.|++++|. ....+ ...+..+++|++|++++|.+... + ..+..+++|+.|++++|.+. .+|
T Consensus 334 ~~L~~L~Ls~N~--------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 334 KSLEFLDLSENL--------MVEEYLKNSACKGAWPSLQTLVLSQNHLRSM-QKTGEILLTLKNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp TTCCEEECCSSC--------CCHHHHHHHTCTTSSTTCCEEECTTSCCCCH-HHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred ccccEEEccCCc--------cccccccchhhhhccccCcEEEccCCccccc-ccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence 555555555553 22222 23366778888888888877764 3 34668888888888888766 455
Q ss_pred C-CCCcCCcCeeeeccccCeeEeCCccccc----cCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccc
Q 044264 325 P-LGKLPSLEQLYFYSMGSVKRVGDEFLGV----ESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLS 399 (439)
Q Consensus 325 ~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~ 399 (439)
. +..+++|+.|++++|. ++.++...... .-...........+++|++|+++++ .++.++. ...+++|+
T Consensus 404 ~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-----~~~l~~L~ 476 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-----ASLFPVLL 476 (549)
T ss_dssp SCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-----GGGCTTCC
T ss_pred hhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-----cccCccCC
Confidence 4 7778888888888887 44443321100 0000011111246888999999887 4555442 24588999
Q ss_pred eeeecccccccCCC-CCCCCCCCccEEEEcCCc
Q 044264 400 SLCIARCPTLRALP-DHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 400 ~L~i~~c~~l~~l~-~~l~~~~~L~~L~i~~c~ 431 (439)
.|++++| .++.++ ..+..+++|+.|++++|+
T Consensus 477 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 477 VMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp EEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 9999998 566664 457889999999998886
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.9e-26 Score=236.12 Aligned_cols=340 Identities=15% Similarity=0.122 Sum_probs=240.7
Q ss_pred EeeCCCCCccccc-cCCceeEEEEEcCCCCCcCc-ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcc
Q 044264 59 VEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFPI-SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMF 136 (439)
Q Consensus 59 ~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 136 (439)
+++.+.....++. ...+++++.+.++....++. .+.++++|++|++++|. +....|..|..+++|++|++++
T Consensus 9 ~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~- 82 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-----ISKLEPELCQKLPMLKVLNLQH- 82 (680)
T ss_dssp EECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-----CCCCCTTHHHHCTTCCEEECCS-
T ss_pred eECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-----cCccCHHHHhcccCcCEEECCC-
Confidence 3444444444443 45789999999998877765 58889999999999987 6677788899999999999999
Q ss_pred cccccccccccccc-ccccccccceeecCCCCCccCC-hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcc
Q 044264 137 QMWSWNGFIKEIPK-NIEKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 137 ~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~ 214 (439)
+. +..+|. .+..+++|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|++++|.
T Consensus 83 -----n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 83 -----NE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp -----SC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred -----Cc-cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 77 445554 5899999999999999998887 578999999999999998555556678899999999999987
Q ss_pred ccccCCccc--ccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEee
Q 044264 215 SLRYLPAGI--ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQ 292 (439)
Q Consensus 215 ~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 292 (439)
.....+..+ ..+++|+.|+++.|......+..+..+++|+.|.+..+..... ....+...+ ..++|+.|++++
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~~l-~~~~L~~L~L~~ 231 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS----LTEKLCLEL-ANTSIRNLSLSN 231 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHH----HHHHHHHHH-TTSCCCEEECTT
T ss_pred ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChh----hHHHHHHHh-hhccccEEEccC
Confidence 544333333 3568999999999988877788888999999998877642210 111222222 347889999998
Q ss_pred ccCCccCCchhhcccC--ccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCC
Q 044264 293 YRGNNVHPHWMMSLTD--LRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPK 369 (439)
Q Consensus 293 ~~~~~~l~~~~~~~~~--L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (439)
+......|.++..++. |+.|++++|......+. ++.+++|+.|++++|......+.. +..+++
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------~~~l~~ 297 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS--------------LHGLFN 297 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT--------------TTTCTT
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh--------------hcCCCC
Confidence 8887765677776654 99999998877665554 788889999999888743332222 445677
Q ss_pred cceeeccCCCCcc-----ccccCCCcccccCcccceeeecccccccCC-CCCCCCCCCccEEEEcCC
Q 044264 370 LKTIQFWDMYVLK-----EWDYGDTIKGEIMPRLSSLCIARCPTLRAL-PDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 370 L~~L~l~~~~~l~-----~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l-~~~l~~~~~L~~L~i~~c 430 (439)
|+.|+++++..-. .++.........+++|++|++++| .+..+ +..+..+++|+.|++++|
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTC
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCC
Confidence 7777776532111 111001111234566777777766 33333 334556666666666665
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=4.1e-27 Score=237.91 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=88.0
Q ss_pred CCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
..+++.+.+.++....+ |..+.++++|++|++++|. +....|..|..+++|++|++++ |.+....+..
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-----l~~~~p~~~~~l~~L~~L~L~~------n~l~~~~~~~ 123 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-----IQSFSPGSFSGLTSLENLVAVE------TKLASLESFP 123 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-----CCCCCTTSSTTCTTCCEEECTT------SCCCCSSSSC
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-----ccccChhhcCCcccCCEEEccC------Cccccccccc
Confidence 56788888888877666 5567788888999888887 5666677788888888888888 6633334466
Q ss_pred cccccccceeecCCCCCc--cCChhHhhccCCcEeecCCCCcccccchhhhhcc
Q 044264 152 IEKLVHLRYLNLSRLKIE--KLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~ 203 (439)
++.+++|++|++++|.++ .+|..++++++|++|++++|......|..++.+.
T Consensus 124 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 788888888888888876 4678888888888888888763332333343333
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.1e-26 Score=224.96 Aligned_cols=311 Identities=19% Similarity=0.191 Sum_probs=137.7
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIE 153 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 153 (439)
..++.+.+.......+|. +..+++|++|++++|. +... +. +..+++|++|++++ +. +..++. +.
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~-----l~~~-~~-~~~l~~L~~L~l~~------n~-l~~~~~-~~ 109 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ-----LTDI-TP-LKNLTKLVDILMNN------NQ-IADITP-LA 109 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSC-----CCCC-GG-GTTCTTCCEEECCS------SC-CCCCGG-GT
T ss_pred ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCc-----cCCc-hh-hhccccCCEEECCC------Cc-cccChh-hc
Confidence 345555555555444442 4445555555555554 2222 22 45555555555555 43 222222 45
Q ss_pred cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch--------------------hhhhccccceeeccCc
Q 044264 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ--------------------GFGKLINLMYLLNRGT 213 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~--------------------~i~~l~~L~~L~l~~~ 213 (439)
.+++|++|++++|.++.++. +.++++|++|++++|. +..++. .+.++++|++|++++|
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence 55555555555555555443 4555555555555544 333321 1344444444554444
Q ss_pred cccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeec
Q 044264 214 ESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQY 293 (439)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 293 (439)
.. ..++ .+..+++|+.|++.+|...+..+ ++.+++|+.|+++++.... + ..+..+++|++|++++|
T Consensus 188 ~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~---------~-~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 188 KV-SDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---------I-GTLASLTNLTDLDLANN 253 (466)
T ss_dssp CC-CCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC---------C-GGGGGCTTCSEEECCSS
T ss_pred cC-CCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc---------c-hhhhcCCCCCEEECCCC
Confidence 42 2221 24444455555554444332222 3444445555444442111 0 12334445555555554
Q ss_pred cCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccc----------cCCCCCCCCC
Q 044264 294 RGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGV----------ESDHGRASSS 363 (439)
Q Consensus 294 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~----------~~~~~~~~~~ 363 (439)
..... + .+..+++|+.|++++|.... ++.+..+++|+.|++++|. +..++. +... +...+. ..
T Consensus 254 ~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~--~~ 326 (466)
T 1o6v_A 254 QISNL-A-PLSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDI--SP 326 (466)
T ss_dssp CCCCC-G-GGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCC--GG
T ss_pred ccccc-h-hhhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCc--hh
Confidence 44442 1 14444455555555444332 2224444444555444443 221111 0000 000000 00
Q ss_pred CcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 364 VVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 364 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
+..+++|++|++++| .+..+. ....+++|+.|++++| .+..++. +..+++|+.|++++|+
T Consensus 327 ~~~l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNN-KVSDVS-----SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEE
T ss_pred hccCccCCEeECCCC-ccCCch-----hhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCc
Confidence 334555666666555 233221 2235566666777666 3344333 5666777777776663
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=6.2e-27 Score=219.96 Aligned_cols=282 Identities=18% Similarity=0.202 Sum_probs=229.3
Q ss_pred CCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh
Q 044264 94 CSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE 173 (439)
Q Consensus 94 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~ 173 (439)
..+++++.|++.++. + ..++. +..+++|++|++++ +. +..++. +..+++|++|++++|.++.+|
T Consensus 41 ~~l~~L~~L~l~~~~-----i-~~~~~-~~~~~~L~~L~l~~------n~-i~~~~~-~~~l~~L~~L~L~~n~i~~~~- 104 (347)
T 4fmz_A 41 EELESITKLVVAGEK-----V-ASIQG-IEYLTNLEYLNLNG------NQ-ITDISP-LSNLVKLTNLYIGTNKITDIS- 104 (347)
T ss_dssp HHHTTCSEEECCSSC-----C-CCCTT-GGGCTTCCEEECCS------SC-CCCCGG-GTTCTTCCEEECCSSCCCCCG-
T ss_pred hhcccccEEEEeCCc-----c-ccchh-hhhcCCccEEEccC------Cc-cccchh-hhcCCcCCEEEccCCcccCch-
Confidence 467899999999987 2 23443 78899999999999 76 555655 899999999999999999886
Q ss_pred hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCc
Q 044264 174 TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNL 253 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 253 (439)
.+..+++|++|++++|. +..++. +..+++|++|++++|......+ .+..+++|+.|++.+|....... +..+++|
T Consensus 105 ~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L 179 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDL 179 (347)
T ss_dssp GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCC
Confidence 68999999999999998 777776 8999999999999997666554 48899999999999887654433 8899999
Q ss_pred ceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcC
Q 044264 254 IDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLE 333 (439)
Q Consensus 254 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~ 333 (439)
+.|+++++.... ++. +..+++|+.|+++++..... + .+..+++|+.|++++|.... ++.+..+++|+
T Consensus 180 ~~L~l~~n~l~~---------~~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L~l~~n~l~~-~~~~~~l~~L~ 246 (347)
T 4fmz_A 180 YSLSLNYNQIED---------ISP-LASLTSLHYFTAYVNQITDI-T-PVANMTRLNSLKIGNNKITD-LSPLANLSQLT 246 (347)
T ss_dssp SEEECTTSCCCC---------CGG-GGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCC-CGGGTTCTTCC
T ss_pred CEEEccCCcccc---------ccc-ccCCCccceeecccCCCCCC-c-hhhcCCcCCEEEccCCccCC-CcchhcCCCCC
Confidence 999999884322 112 67789999999999998874 3 38899999999999997754 44488999999
Q ss_pred eeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCC
Q 044264 334 QLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALP 413 (439)
Q Consensus 334 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~ 413 (439)
.|++++|. +..++. +..+++|++|++++| .++.++ ....+++|++|++++|......|
T Consensus 247 ~L~l~~n~-l~~~~~---------------~~~l~~L~~L~l~~n-~l~~~~-----~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 247 WLEIGTNQ-ISDINA---------------VKDLTKLKMLNVGSN-QISDIS-----VLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp EEECCSSC-CCCCGG---------------GTTCTTCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCSSCCCGGGH
T ss_pred EEECCCCc-cCCChh---------------HhcCCCcCEEEccCC-ccCCCh-----hhcCCCCCCEEECcCCcCCCcCh
Confidence 99999997 443321 567899999999998 455542 23578999999999995444455
Q ss_pred CCCCCCCCccEEEEcCCc
Q 044264 414 DHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 414 ~~l~~~~~L~~L~i~~c~ 431 (439)
..+..+++|+.|++++|+
T Consensus 305 ~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHHHTCTTCSEEECCSSS
T ss_pred hHhhccccCCEEEccCCc
Confidence 667889999999999996
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=227.39 Aligned_cols=310 Identities=19% Similarity=0.130 Sum_probs=243.5
Q ss_pred eeCCCCCccccc-cCCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccc
Q 044264 60 EIDGREEPFIDS-LGQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQ 137 (439)
Q Consensus 60 ~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 137 (439)
.+.+.....++. ....++.+.+.++....+ +..+.++++|+.|++++|. +....|..|..+++|++|++++
T Consensus 17 ~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~L~~-- 89 (477)
T 2id5_A 17 LCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-----VSAVEPGAFNNLFNLRTLGLRS-- 89 (477)
T ss_dssp ECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECCS--
T ss_pred EeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-----cCEeChhhhhCCccCCEEECCC--
Confidence 333333333333 467899999999998777 4678899999999999987 6677788899999999999999
Q ss_pred cccccccccccc-cccccccccceeecCCCCCccC-ChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccc
Q 044264 138 MWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTES 215 (439)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~ 215 (439)
+. +..+| ..+..+++|++|++++|.+..+ |..+.++++|++|++++|......+..+..+++|++|++++|..
T Consensus 90 ----n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 90 ----NR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp ----SC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred ----Cc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 77 44555 4578999999999999998765 56789999999999999984444566789999999999999985
Q ss_pred cccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccC
Q 044264 216 LRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRG 295 (439)
Q Consensus 216 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 295 (439)
....+..+..+++|+.|++..|......+..+..+++|+.|+++++... ..++.......+|++|++++|.+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~--------~~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL--------DTMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC--------CEECTTTTTTCCCSEEEEESSCC
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc--------cccCcccccCccccEEECcCCcc
Confidence 4333345889999999999999888777778999999999999987422 22233344456999999999998
Q ss_pred CccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceee
Q 044264 296 NNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQ 374 (439)
Q Consensus 296 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 374 (439)
....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|. +..+... .+..+++|+.|+
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------------~~~~l~~L~~L~ 302 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPY-------------AFRGLNYLRVLN 302 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTT-------------TBTTCTTCCEEE
T ss_pred cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHH-------------HhcCcccCCEEE
Confidence 886335678999999999999987655554 8899999999999998 4444332 256789999999
Q ss_pred ccCCCCccccccCCCcccccCcccceeeecccc
Q 044264 375 FWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCP 407 (439)
Q Consensus 375 l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~ 407 (439)
++++ .++.++.. ....+++|++|++++++
T Consensus 303 L~~N-~l~~~~~~---~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 303 VSGN-QLTTLEES---VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCSS-CCSCCCGG---GBSCGGGCCEEECCSSC
T ss_pred CCCC-cCceeCHh---HcCCCcccCEEEccCCC
Confidence 9987 45544322 12457899999999885
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.4e-26 Score=226.11 Aligned_cols=293 Identities=20% Similarity=0.256 Sum_probs=160.8
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..+++.+.+.++....++. +..+++|+.|++.+|. +....+ +..+++|++|++++ +. +..++. +
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-----l~~~~~--~~~l~~L~~L~L~~------n~-l~~~~~-~ 130 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-----IADITP--LANLTNLTGLTLFN------NQ-ITDIDP-L 130 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-----CCCCGG--GTTCTTCCEEECCS------SC-CCCCGG-G
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-----cccChh--hcCCCCCCEEECCC------CC-CCCChH-H
Confidence 4667777777777766665 6677777777777765 333322 66777777777776 44 333333 5
Q ss_pred ccccccceeecCCCCCccCCh--------------------hHhhccCCcEeecCCCCcccccchhhhhccccceeeccC
Q 044264 153 EKLVHLRYLNLSRLKIEKLPE--------------------TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRG 212 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~--------------------~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~ 212 (439)
..+++|++|++++|.+..++. .+.++++|++|++++|. +..++ .+..+++|++|++++
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATN 208 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCS
T ss_pred cCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecC
Confidence 566666666666665443321 24455666666666665 44443 256666666666666
Q ss_pred ccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccC-------------ChHHHHHhC
Q 044264 213 TESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRK-------------KDEEVLEAL 279 (439)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~l 279 (439)
|......| ++.+++|+.|++.+|..... ..+..+++|+.|+++++......... ....++. +
T Consensus 209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~ 283 (466)
T 1o6v_A 209 NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-L 283 (466)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-G
T ss_pred Cccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-c
Confidence 65322221 44555566665555544321 23445555555555544211100000 0000111 3
Q ss_pred CCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCC
Q 044264 280 QPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGR 359 (439)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 359 (439)
..+++|+.|++++|..... + .+..+++|+.|++++|......+ +..+++|+.|++++|. +..+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~------------- 346 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDI-S-PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDV------------- 346 (466)
T ss_dssp TTCTTCSEEECCSSCCSCC-G-GGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCC-------------
T ss_pred cCCCccCeEEcCCCcccCc-h-hhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCc-------------
Confidence 4445555555555554442 1 14455555555555554433222 4455556666665554 2222
Q ss_pred CCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCC
Q 044264 360 ASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPD 414 (439)
Q Consensus 360 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~ 414 (439)
..+..+++|+.|++++|. +..+. +...+++|+.|++++| .+..+|.
T Consensus 347 --~~l~~l~~L~~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 347 --SSLANLTNINWLSAGHNQ-ISDLT-----PLANLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp --GGGTTCTTCCEEECCSSC-CCBCG-----GGTTCTTCCEEECCCE-EEECCCB
T ss_pred --hhhccCCCCCEEeCCCCc-cCccc-----hhhcCCCCCEEeccCC-cccCCch
Confidence 126679999999999984 33332 2367899999999999 4555544
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.4e-26 Score=221.18 Aligned_cols=296 Identities=18% Similarity=0.129 Sum_probs=232.0
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..+++.+.+.++....+| .+..+++|++|++++|. +.+ +| +..+++|++|++++ |. +..++ +
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-----l~~-~~--~~~l~~L~~L~Ls~------N~-l~~~~--~ 102 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN-----ITT-LD--LSQNTNLTYLACDS------NK-LTNLD--V 102 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC-----CSC-CC--CTTCTTCSEEECCS------SC-CSCCC--C
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc-----CCe-Ec--cccCCCCCEEECcC------CC-Cceee--c
Confidence 477999999998888877 68899999999999997 333 33 78999999999999 76 44444 8
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRV 232 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (439)
+.+++|++|++++|.++.+| ++.+++|++|++++|. +..++ ++.+++|++|++++|.....+ .+..+++|+.|
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 89999999999999999886 8899999999999998 66664 789999999999999766665 47789999999
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
+++.|.... ++ ++.+++|+.|++++|.... + .+..+++|+.|++++|.+..+ | +..+++|+.|
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~---------~--~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L 238 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITK---------L--DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYF 238 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC---------C--CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEE
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCe---------e--ccccCCCCCEEECcCCccccc-C--ccccCCCCEE
Confidence 999988765 23 8889999999999885332 1 377889999999999999885 6 7789999999
Q ss_pred eecCCCCCCcCCCCCCcCCcCeeee----------ccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCcc
Q 044264 313 TLSHCINCEHLPPLGKLPSLEQLYF----------YSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLK 382 (439)
Q Consensus 313 ~l~~~~~~~~~~~~~~l~~L~~L~l----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 382 (439)
++++|.+.... ++.+++|+.|++ ++|..++.++ ...+++|+.|++++|..+.
T Consensus 239 ~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----------------~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 239 DCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----------------AEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----------------CTTCTTCCCCCCTTCTTCC
T ss_pred EeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc----------------ccccccCCEEECCCCcccc
Confidence 99999876532 345555555544 4444333332 3458999999999998766
Q ss_pred ccccCC----CcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 383 EWDYGD----TIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 383 ~~~~~~----~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
.++... .......|+|++|++++| .++.++ +..+++|+.|+++++.
T Consensus 301 ~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 301 LLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred eeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 655321 112245678888888887 666664 7889999999998874
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-26 Score=220.98 Aligned_cols=285 Identities=16% Similarity=0.122 Sum_probs=232.4
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh-
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE- 173 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~- 173 (439)
.+++++.+++.++. +....+..+..+++|++|++++ +.+....+..+..+++|++|++++|.++.+|+
T Consensus 43 ~l~~l~~l~l~~~~-----l~~l~~~~~~~l~~L~~L~L~~------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-----MRKLPAALLDSFRQVELLNLND------LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCE-----ESEECTHHHHHCCCCSEEECTT------SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCceEEEecCCc-----hhhCChhHhcccccCcEEECCC------CcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence 46899999999987 5555556689999999999999 77444445578999999999999999988764
Q ss_pred hHhhccCCcEeecCCCCcccccchh-hhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccC
Q 044264 174 TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
.++++++|++|++++|. +..+|.. ++.+++|++|++++|......|..+..+++|++|++++|..... .++.+++
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~ 187 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTT
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccc
Confidence 58999999999999998 7788776 58999999999999986555566789999999999999877643 4678899
Q ss_pred cceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCc
Q 044264 253 LIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSL 332 (439)
Q Consensus 253 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L 332 (439)
|+.|+++++... .+...++|++|++++|..... |.. .+++|+.|++++|.... .+.+..+++|
T Consensus 188 L~~L~l~~n~l~-------------~~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~-~~~l~~l~~L 250 (390)
T 3o6n_A 188 LFHANVSYNLLS-------------TLAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTD-TAWLLNYPGL 250 (390)
T ss_dssp CSEEECCSSCCS-------------EEECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCC-CGGGGGCTTC
T ss_pred cceeeccccccc-------------ccCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcc-cHHHcCCCCc
Confidence 999999988422 234567999999999998876 443 45899999999997754 4668889999
Q ss_pred CeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCC
Q 044264 333 EQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL 412 (439)
Q Consensus 333 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l 412 (439)
+.|++++|......+.. +..+++|++|+++++ .++.++... ..+|+|++|++++| .+..+
T Consensus 251 ~~L~Ls~n~l~~~~~~~--------------~~~l~~L~~L~L~~n-~l~~~~~~~----~~l~~L~~L~L~~n-~l~~~ 310 (390)
T 3o6n_A 251 VEVDLSYNELEKIMYHP--------------FVKMQRLERLYISNN-RLVALNLYG----QPIPTLKVLDLSHN-HLLHV 310 (390)
T ss_dssp SEEECCSSCCCEEESGG--------------GTTCSSCCEEECCSS-CCCEEECSS----SCCTTCCEEECCSS-CCCCC
T ss_pred cEEECCCCcCCCcChhH--------------ccccccCCEEECCCC-cCcccCccc----CCCCCCCEEECCCC-cceec
Confidence 99999999844333332 566899999999986 455554322 56899999999999 77888
Q ss_pred CCCCCCCCCccEEEEcCCc
Q 044264 413 PDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 413 ~~~l~~~~~L~~L~i~~c~ 431 (439)
|..+..+++|+.|++++|+
T Consensus 311 ~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 311 ERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp GGGHHHHTTCSEEECCSSC
T ss_pred CccccccCcCCEEECCCCc
Confidence 8888889999999999985
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.1e-26 Score=231.90 Aligned_cols=168 Identities=19% Similarity=0.150 Sum_probs=138.1
Q ss_pred EEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccce
Q 044264 81 VKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRY 160 (439)
Q Consensus 81 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 160 (439)
........+|..+. +.+++|++++|. +.+..|..|..+++|++|++++ |.+....|..+..+++|++
T Consensus 12 ~~~~~l~~ip~~~~--~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 12 GRSRSFTSIPSGLT--AAMKSLDLSFNK-----ITYIGHGDLRACANLQVLILKS------SRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp CTTSCCSSCCSCCC--TTCCEEECCSSC-----CCEECSSTTSSCTTCCEEECTT------SCCCEECTTTTTTCTTCCE
T ss_pred CCCCccccccccCC--CCccEEECcCCc-----cCccChhhhhcCCcccEEECCC------CCcCccChhhccccccCCE
Confidence 34455677887654 789999999998 5666677899999999999999 7755555678999999999
Q ss_pred eecCCCCCccCChh-HhhccCCcEeecCCCCccc-ccchhhhhccccceeeccCccccccCC-cccccCcccccccceee
Q 044264 161 LNLSRLKIEKLPET-LCELYNLQLLNVESCQDLK-ELPQGFGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRVEKFVV 237 (439)
Q Consensus 161 L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~-~l~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 237 (439)
|++++|.++.+|+. ++++++|++|++++|.... ..|..++++++|++|++++|.....+| ..+..+++|++|++.+|
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 99999999988865 9999999999999998332 356779999999999999998666665 57899999999999999
Q ss_pred ccccccccccccccCcceeeeccc
Q 044264 238 GRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
...+..+..++.+++|+.|+++.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECS
T ss_pred cccccChhhhhccccCceEecccC
Confidence 887777777776666666665554
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3.4e-27 Score=218.11 Aligned_cols=249 Identities=19% Similarity=0.189 Sum_probs=164.2
Q ss_pred CceeEEEEEcCCCC---CcCcccCCCCCeeEEEecC-CCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGA---PFPISFCSVKRLRSLLIDD-NGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149 (439)
Q Consensus 74 ~~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 149 (439)
.+++.+.+.+.... .+|..+.++++|++|++++ +. +.+.+|..+..+++|++|++++ +.+.+.+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-----l~~~~p~~l~~l~~L~~L~Ls~------n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPIPPAIAKLTQLHYLYITH------TNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESCCCGGGGGCTTCSEEEEEE------ECCEEECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-----ccccCChhHhcCCCCCEEECcC------CeeCCcCC
Confidence 45777777776664 4666777777777777774 54 4556666677777777777777 66444666
Q ss_pred cccccccccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccccchhhhhcc-ccceeeccCccccccCCcccccCc
Q 044264 150 KNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLI-NLMYLLNRGTESLRYLPAGIERLT 227 (439)
Q Consensus 150 ~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~l~ 227 (439)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.....+|..+..++ +|++|++++|......|..+..++
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 66777777777777777766 6666777777777777777764446677777776 777777777766556666666665
Q ss_pred ccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhccc
Q 044264 228 SLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLT 307 (439)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~ 307 (439)
|+.|++++|...+..+..+..+++|+.|++++|... ..+..+..+++|++|++++|.+...+|.++..++
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA---------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC---------CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee---------eecCcccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 777777776666666666667777777777666311 1122255566666666666666544466666666
Q ss_pred CccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCe
Q 044264 308 DLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSV 343 (439)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 343 (439)
+|+.|++++|.+...+|..+.+++|+.|++.+|+.+
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred CCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 666666666666656665566666666666666643
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=6.8e-27 Score=216.08 Aligned_cols=250 Identities=16% Similarity=0.141 Sum_probs=198.4
Q ss_pred CCeeEEEecCCCCChhhHhh--hhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCc-cCCh
Q 044264 97 KRLRSLLIDDNGDDEFWLTE--VLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-KLPE 173 (439)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~ 173 (439)
.+++.|+++++. +.+ .+|..+..+++|++|+++++ +.+.+.+|..+..+++|++|++++|.++ .+|.
T Consensus 50 ~~l~~L~L~~~~-----l~~~~~~~~~l~~l~~L~~L~L~~~-----n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLN-----LPKPYPIPSSLANLPYLNFLYIGGI-----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCC-----CSSCEECCGGGGGCTTCSEEEEEEE-----TTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCC-----ccCCcccChhHhCCCCCCeeeCCCC-----CcccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 579999999987 555 67888999999999999831 5546678888999999999999999987 8899
Q ss_pred hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCc-ccccccceeeccccccccccccccC
Q 044264 174 TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLT-SLRRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
.+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..+..++ +|+.|+++.|...+..+..+..++
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 999999999999999985558899999999999999999987668888899988 999999999888877888888887
Q ss_pred cceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCC
Q 044264 253 LIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPS 331 (439)
Q Consensus 253 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~ 331 (439)
|+.|++++|... ...+..+..+++|+.|++++|.+... +..+..+++|+.|++++|.+...+|. +..+++
T Consensus 199 L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 199 LAFVDLSRNMLE--------GDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp CSEEECCSSEEE--------ECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred ccEEECcCCccc--------CcCCHHHhcCCCCCEEECCCCceeee-cCcccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 888888887421 23456677788888888888877665 34466778888888888877656664 777788
Q ss_pred cCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCc
Q 044264 332 LEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVL 381 (439)
Q Consensus 332 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 381 (439)
|+.|++++|...+.+|. ...+++|+.|++.+++.+
T Consensus 270 L~~L~Ls~N~l~~~ip~---------------~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQ---------------GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCEEECCSSEEEEECCC---------------STTGGGSCGGGTCSSSEE
T ss_pred CCEEECcCCcccccCCC---------------CccccccChHHhcCCCCc
Confidence 88888888774445443 234666667776666533
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=7.6e-26 Score=236.48 Aligned_cols=313 Identities=18% Similarity=0.145 Sum_probs=241.9
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccc-cccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI-PKNIEKLV 156 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~l~ 156 (439)
.+.........+|. -.+++++|++++|. +....+..|..+++|++|++++ |.....+ |..+.+++
T Consensus 8 ~~dcs~~~L~~vP~---lp~~l~~LdLs~N~-----i~~i~~~~~~~l~~L~~LdLs~------n~~~~~i~~~~f~~L~ 73 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ---VLNTTERLLLSFNY-----IRTVTASSFPFLEQLQLLELGS------QYTPLTIDKEAFRNLP 73 (844)
T ss_dssp EEEESCCCSSCCCS---SCTTCCEEEEESCC-----CCEECSSSCSSCCSCSEEEECT------TCCCCEECTTTTSSCT
T ss_pred EEEccCCCCCCCCC---CCCCcCEEECCCCc-----CCccChhHCcccccCeEEeCCC------CCCccccCHHHhcCCC
Confidence 44556667788887 35789999999998 6777788899999999999999 7545555 67899999
Q ss_pred ccceeecCCCCCccC-ChhHhhccCCcEeecCCCCcccccchh--hhhccccceeeccCccccccCC-cccccCcccccc
Q 044264 157 HLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQG--FGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRV 232 (439)
Q Consensus 157 ~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~--i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 232 (439)
+|++|+|++|.++.+ |..++++++|++|++++|......|.. ++++++|++|++++|......+ ..++++++|++|
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 999999999998866 778999999999999999855546654 8999999999999998655433 568999999999
Q ss_pred cceeeccccccccccccc--cCcceeeecccCCcchhccCChHHHHHhCCCCC------CccEEEEeeccCCccCCchhh
Q 044264 233 EKFVVGRGVARSSELENK--KNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP------NLKHLGIHQYRGNNVHPHWMM 304 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~l~~~~~ 304 (439)
+++.|......+..+..+ ++|+.|+++.+.... ..+..+..++ .|+.|++++|......+..+.
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~--------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS--------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC--------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred ECCCCcCCeeCHHHcccccCCccceEECCCCcccc--------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 999998888788888887 899999999885221 1222233333 389999998854432222221
Q ss_pred ------------------------------------c--ccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeE
Q 044264 305 ------------------------------------S--LTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKR 345 (439)
Q Consensus 305 ------------------------------------~--~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~ 345 (439)
. .++|+.|++++|......+. +..+++|+.|++++|. +..
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~ 304 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INK 304 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCE
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCC
Confidence 1 36899999999987766554 8889999999999998 444
Q ss_pred eCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCC-CCCCCCCccE
Q 044264 346 VGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPD-HLLQTTTLQK 424 (439)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~-~l~~~~~L~~ 424 (439)
++.. .+..+++|++|+++++. +..+. ......+++|+.|++++| .+..++. .+..+++|+.
T Consensus 305 ~~~~-------------~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 305 IADE-------------AFYGLDNLQVLNLSYNL-LGELY---SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp ECTT-------------TTTTCSSCCEEEEESCC-CSCCC---SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCE
T ss_pred CChH-------------HhcCCCCCCEEECCCCC-CCccC---HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCE
Confidence 4332 25678999999999873 33332 122357899999999999 6677654 5778999999
Q ss_pred EEEcCCc
Q 044264 425 LEIWGCP 431 (439)
Q Consensus 425 L~i~~c~ 431 (439)
|++++|.
T Consensus 367 L~Ls~N~ 373 (844)
T 3j0a_A 367 LDLRDNA 373 (844)
T ss_dssp EEEETCC
T ss_pred EECCCCC
Confidence 9999985
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.1e-26 Score=228.35 Aligned_cols=285 Identities=16% Similarity=0.125 Sum_probs=233.8
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh-
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE- 173 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~- 173 (439)
.+++++.+++.++. +....+..+..+++|++|++++ +.+....|..+..+++|++|+|++|.++.+|+
T Consensus 49 ~l~~l~~l~l~~~~-----l~~lp~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNST-----MRKLPAALLDSFRQVELLNLND------LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCE-----ESEECTHHHHHCCCCSEEECTT------SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCceEEEeeCCC-----CCCcCHHHHccCCCCcEEECCC------CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence 46789999999987 5666667789999999999999 77455555689999999999999999988875
Q ss_pred hHhhccCCcEeecCCCCcccccchh-hhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccC
Q 044264 174 TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
.++++++|++|++++|. +..+|.. ++.+++|++|++++|......|..++.+++|+.|++++|..... .++.+++
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTT
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhh
Confidence 56999999999999998 6777765 58999999999999987666667799999999999999877653 3677899
Q ss_pred cceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCc
Q 044264 253 LIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSL 332 (439)
Q Consensus 253 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L 332 (439)
|+.|+++++... .+..+++|+.|++++|.+..+ +..+ .++|+.|++++|.+.. .+.+..+++|
T Consensus 194 L~~L~l~~n~l~-------------~l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~-~~~l~~l~~L 256 (597)
T 3oja_B 194 LFHANVSYNLLS-------------TLAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD-TAWLLNYPGL 256 (597)
T ss_dssp CSEEECCSSCCS-------------EEECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC-CGGGGGCTTC
T ss_pred hhhhhcccCccc-------------cccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC-ChhhccCCCC
Confidence 999999988422 244567899999999998875 4433 4799999999998764 4568899999
Q ss_pred CeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCC
Q 044264 333 EQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL 412 (439)
Q Consensus 333 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l 412 (439)
+.|++++|......+.. +..+++|+.|+++++ .+..++... ..+|+|+.|++++| .+..+
T Consensus 257 ~~L~Ls~N~l~~~~~~~--------------~~~l~~L~~L~Ls~N-~l~~l~~~~----~~l~~L~~L~Ls~N-~l~~i 316 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHP--------------FVKMQRLERLYISNN-RLVALNLYG----QPIPTLKVLDLSHN-HLLHV 316 (597)
T ss_dssp SEEECCSSCCCEEESGG--------------GTTCSSCCEEECTTS-CCCEEECSS----SCCTTCCEEECCSS-CCCCC
T ss_pred CEEECCCCccCCCCHHH--------------hcCccCCCEEECCCC-CCCCCCccc----ccCCCCcEEECCCC-CCCcc
Confidence 99999999844433432 567899999999986 455554322 56899999999999 67789
Q ss_pred CCCCCCCCCccEEEEcCCc
Q 044264 413 PDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 413 ~~~l~~~~~L~~L~i~~c~ 431 (439)
|..+..+++|+.|++++|.
T Consensus 317 ~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp GGGHHHHTTCSEEECCSSC
T ss_pred CcccccCCCCCEEECCCCC
Confidence 8888889999999999986
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=9.4e-26 Score=226.28 Aligned_cols=357 Identities=15% Similarity=0.079 Sum_probs=236.9
Q ss_pred EeeCCCCCccccc-cCCceeEEEEEcCCCCCcC-cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcc
Q 044264 59 VEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFP-ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMF 136 (439)
Q Consensus 59 ~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 136 (439)
+++.+.....++. ....++++.+.++....++ ..+..+++|++|++++|. +....+..|..+++|++|++++
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~i~~~~~~~l~~L~~L~L~~- 85 (570)
T 2z63_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTG- 85 (570)
T ss_dssp EECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTT-
T ss_pred EEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-----CCccCcccccCchhCCEEeCcC-
Confidence 4444444444443 5678999999999887774 478899999999999997 5666677899999999999999
Q ss_pred ccccccccccccccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCccc-ccchhhhhccccceeeccCcc
Q 044264 137 QMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLK-ELPQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~l~~~i~~l~~L~~L~l~~~~ 214 (439)
+.+....|..+..+++|++|++++|.++.++. .++++++|++|++++|.... .+|..++++++|++|++++|.
T Consensus 86 -----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 86 -----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp -----CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred -----CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 77444455789999999999999999998876 68999999999999998433 478999999999999999987
Q ss_pred ccccCCcccccCccc----ccccceeeccc--------------------------------------------------
Q 044264 215 SLRYLPAGIERLTSL----RRVEKFVVGRG-------------------------------------------------- 240 (439)
Q Consensus 215 ~~~~~~~~~~~l~~L----~~L~l~~~~~~-------------------------------------------------- 240 (439)
.....|..++.+++| +.+++..|...
T Consensus 161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred cceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 543333334444333 22222222111
Q ss_pred -------------------------------cccccccccccCcceeeecccCCcchhccC-------------ChHHHH
Q 044264 241 -------------------------------VARSSELENKKNLIDLLLYFGHGNEERKRK-------------KDEEVL 276 (439)
Q Consensus 241 -------------------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~ 276 (439)
+..+..+..+++|+.|+++++......... ....++
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~ 320 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCC
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccC
Confidence 111223344455555555444211000000 000000
Q ss_pred --------------------HhCCCCCCccEEEEeeccCCccC--CchhhcccCccEEeecCCCCCCcCCCCCCcCCcCe
Q 044264 277 --------------------EALQPPPNLKHLGIHQYRGNNVH--PHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQ 334 (439)
Q Consensus 277 --------------------~~l~~~~~L~~L~l~~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 334 (439)
.....+++|++|++++|...... +..+..+++|+.|++++|......+.+..+++|+.
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 400 (570)
T 2z63_A 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400 (570)
T ss_dssp BCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred cccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCE
Confidence 00146789999999999887642 46677999999999999987654444788999999
Q ss_pred eeeccccCeeEeCC-c-cccc----------cCCCCCCCCCCcCCCCcceeeccCCCCc-cccccCCCcccccCccccee
Q 044264 335 LYFYSMGSVKRVGD-E-FLGV----------ESDHGRASSSVVAFPKLKTIQFWDMYVL-KEWDYGDTIKGEIMPRLSSL 401 (439)
Q Consensus 335 L~l~~~~~l~~~~~-~-~~~~----------~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~p~L~~L 401 (439)
|++++|. +...+. . +... .......+..+..+++|++|++++|.-. ..++ .....+++|++|
T Consensus 401 L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p----~~~~~l~~L~~L 475 (570)
T 2z63_A 401 LDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----DIFTELRNLTFL 475 (570)
T ss_dssp EECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC----SCCTTCTTCCEE
T ss_pred EEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch----hhhhcccCCCEE
Confidence 9999987 333322 1 1111 1111123334556677777777666311 0111 122567888888
Q ss_pred eecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 402 CIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 402 ~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
++++|......|..+..+++|+.|++++|.
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 888884333336677788888888888873
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=7.5e-25 Score=224.30 Aligned_cols=342 Identities=18% Similarity=0.095 Sum_probs=186.6
Q ss_pred CCceeEEEEEcCCCCCcCc-ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPI-SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
..+++.+.+.++....+|. .+..+++|++|++++|. +....+..|..+++|++|++++ |.+....|..
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~ 140 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-----IQKIKNNPFVKQKNLITLDLSH------NGLSSTKLGT 140 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----CCCCCSCTTTTCTTCCEEECCS------SCCSCCCCCS
T ss_pred ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-----cCccChhHccccCCCCEEECCC------CcccccCchh
Confidence 4567777777777766665 46777778888887776 4444555677777788888877 6544445566
Q ss_pred cccccccceeecCCCCCccCChh-Hh--hccCCcEeecCCCCcccccchh------------------------------
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPET-LC--ELYNLQLLNVESCQDLKELPQG------------------------------ 198 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~-i~--~l~~L~~L~l~~~~~~~~l~~~------------------------------ 198 (439)
+..+++|++|++++|.++.+++. +. .+++|++|++++|......|..
T Consensus 141 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~ 220 (680)
T 1ziw_A 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220 (680)
T ss_dssp SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHT
T ss_pred hcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhh
Confidence 67777777777777776665542 22 3466777777666522222222
Q ss_pred ---------------------hhhccc--cceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcce
Q 044264 199 ---------------------FGKLIN--LMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLID 255 (439)
Q Consensus 199 ---------------------i~~l~~--L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 255 (439)
+..++. |+.|++++|......|..++.+++|+.|++.+|...+..+..+..+++|+.
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence 222222 555555554433333344555555555555555554444455555555555
Q ss_pred eeecccCCcchhccCChHHHHH----hCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCC-------------
Q 044264 256 LLLYFGHGNEERKRKKDEEVLE----ALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCI------------- 318 (439)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~------------- 318 (439)
|+++++...... ....++. .+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 301 L~L~~~~~~~~~---~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~ 377 (680)
T 1ziw_A 301 LNLKRSFTKQSI---SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377 (680)
T ss_dssp EECTTCBCCC---------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred Eeccchhhhccc---ccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc
Confidence 555443110000 0001111 45567777777777777666545556666666666666553
Q ss_pred ---------------CCCcCCC-CCCcCCcCeeeeccccCeeEeCCccc-cccC----------CCCCCCCCCcCCCCcc
Q 044264 319 ---------------NCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFL-GVES----------DHGRASSSVVAFPKLK 371 (439)
Q Consensus 319 ---------------~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~----------~~~~~~~~~~~l~~L~ 371 (439)
.....+. +..+++|+.|++++|.....++...+ .... .....+..+..+|+|+
T Consensus 378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457 (680)
T ss_dssp GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence 2222222 55566666666666664443432111 0000 0011122233344444
Q ss_pred eeeccCCCCccccccCCCcccccCcccceeeecccccccCCCC-CCCCCCCccEEEEcCCc
Q 044264 372 TIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPD-HLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 372 ~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~-~l~~~~~L~~L~i~~c~ 431 (439)
.|+++++. +..+. ..+.....+++|+.|++++| .++.++. .+..+++|+.|++++|.
T Consensus 458 ~L~l~~n~-l~~~~-~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 458 RLMLRRVA-LKNVD-SSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp EEECTTSC-CBCTT-CSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhcccc-ccccc-cCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC
Confidence 44444432 11100 01112245778888888888 5666654 46778899999998884
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1e-25 Score=209.43 Aligned_cols=231 Identities=19% Similarity=0.251 Sum_probs=147.8
Q ss_pred cCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcc
Q 044264 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203 (439)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~ 203 (439)
..+.++.|++++ +. +..+|..+..+++|++|++++|.++.+|..++++++|++|++++|. +..+|..+++++
T Consensus 79 ~~~~l~~L~L~~------n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 79 TQPGRVALELRS------VP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp TSTTCCEEEEES------SC-CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred cccceeEEEccC------CC-chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 357888999988 76 5578888888999999999999988888888899999999999887 568888888999
Q ss_pred ccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCC
Q 044264 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP 283 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (439)
+|++|++++|.....+|..+... .....+..+++|+.|++++|. ...++..+..++
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~---------l~~lp~~l~~l~ 206 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTG---------IRSLPASIANLQ 206 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEEC---------CCCCCGGGGGCT
T ss_pred CCCEEECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCC---------cCcchHhhcCCC
Confidence 99999998888777777665430 001123334444444444442 112233344455
Q ss_pred CccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCC
Q 044264 284 NLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASS 362 (439)
Q Consensus 284 ~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 362 (439)
+|++|++++|.+... |..+..+++|+.|++++|.....+|. ++.+++|+.|++++|...+.++..
T Consensus 207 ~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~------------- 272 (328)
T 4fcg_A 207 NLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD------------- 272 (328)
T ss_dssp TCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-------------
T ss_pred CCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-------------
Confidence 555555555555544 44555666666666666655555554 555666666666666555444432
Q ss_pred CCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecc
Q 044264 363 SVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIAR 405 (439)
Q Consensus 363 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~ 405 (439)
+..+++|++|++++|..+..++... ..+++|+.+.+..
T Consensus 273 -~~~l~~L~~L~L~~n~~~~~iP~~l----~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 273 -IHRLTQLEKLDLRGCVNLSRLPSLI----AQLPANCIILVPP 310 (328)
T ss_dssp -GGGCTTCCEEECTTCTTCCCCCGGG----GGSCTTCEEECCG
T ss_pred -hhcCCCCCEEeCCCCCchhhccHHH----hhccCceEEeCCH
Confidence 3345666666666665555555433 3455565555554
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.6e-25 Score=217.19 Aligned_cols=274 Identities=19% Similarity=0.157 Sum_probs=215.2
Q ss_pred ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccC
Q 044264 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL 171 (439)
Q Consensus 92 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 171 (439)
.+.++++|++|+++++. +.+ +| .+..+++|++|++++ +. +..+| ++.+++|++|++++|.++.+
T Consensus 37 ~~~~l~~L~~L~Ls~n~-----l~~-~~-~l~~l~~L~~L~Ls~------n~-l~~~~--~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS-----ITD-MT-GIEKLTGLTKLICTS------NN-ITTLD--LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp EHHHHTTCCEEECCSSC-----CCC-CT-TGGGCTTCSEEECCS------SC-CSCCC--CTTCTTCSEEECCSSCCSCC
T ss_pred ChhHcCCCCEEEccCCC-----ccc-Ch-hhcccCCCCEEEccC------Cc-CCeEc--cccCCCCCEEECcCCCCcee
Confidence 45678999999999997 343 35 488999999999999 76 44454 88999999999999999988
Q ss_pred ChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeecccccccccccccc
Q 044264 172 PETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKK 251 (439)
Q Consensus 172 p~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 251 (439)
| ++++++|++|++++|. +..+| ++.+++|++|++++|.. ..++ ++.+++|+.|++..|...+.. .++.++
T Consensus 101 ~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp C--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred e--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcCCEEECCCCCccccc--ccccCC
Confidence 6 8899999999999998 66676 88999999999999985 4443 788999999999988655444 588999
Q ss_pred CcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCC
Q 044264 252 NLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPS 331 (439)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 331 (439)
+|+.|+++++.... ++ +..+++|+.|++++|..... .+..+++|+.|++++|.... +| ++.+++
T Consensus 171 ~L~~L~ls~n~l~~---------l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~ 234 (457)
T 3bz5_A 171 QLTTLDCSFNKITE---------LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQ 234 (457)
T ss_dssp TCCEEECCSSCCCC---------CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTT
T ss_pred cCCEEECCCCccce---------ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCC
Confidence 99999999984322 22 77889999999999998874 37789999999999998766 56 889999
Q ss_pred cCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCC----------cceeeccCCCCccccccCCCcccccCccccee
Q 044264 332 LEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPK----------LKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSL 401 (439)
Q Consensus 332 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----------L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L 401 (439)
|+.|++++|. ++.++. ..+++ |+.|++++|..+..++ ...+++|+.|
T Consensus 235 L~~L~l~~N~-l~~~~~----------------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~------~~~l~~L~~L 291 (457)
T 3bz5_A 235 LTYFDCSVNP-LTELDV----------------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ------AEGCRKIKEL 291 (457)
T ss_dssp CSEEECCSSC-CSCCCC----------------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE------CTTCTTCCCC
T ss_pred CCEEEeeCCc-CCCcCH----------------HHCCCCCEEeccCCCCCEEECCCCccCCccc------ccccccCCEE
Confidence 9999999997 444432 23444 4555555555444443 2467999999
Q ss_pred eecccccccCCCC--------CCCCCCCccEEEEcCC
Q 044264 402 CIARCPTLRALPD--------HLLQTTTLQKLEIWGC 430 (439)
Q Consensus 402 ~i~~c~~l~~l~~--------~l~~~~~L~~L~i~~c 430 (439)
++++|+.++.+|. .+..+++|+.|++++|
T Consensus 292 ~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 292 DVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred ECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 9999987776653 2445566677766655
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=5.1e-25 Score=205.50 Aligned_cols=292 Identities=19% Similarity=0.185 Sum_probs=166.0
Q ss_pred ceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccc
Q 044264 75 NVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEK 154 (439)
Q Consensus 75 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 154 (439)
.++.+.+.......+|..+. ++++.|++++|. +....+..|..+++|++|++++ +.+....|..+..
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-----i~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND-----ISELRKDDFKGLQHLYALVLVN------NKISKIHEKAFSP 100 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCS------SCCCEECGGGSTT
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCc-----CCccCHhHhhCCCCCcEEECCC------CccCccCHhHhhC
Confidence 46667777777777776653 578888888876 4555566677888888888887 6644444667778
Q ss_pred ccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccc--cCCcccccCccccc
Q 044264 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLR--YLPAGIERLTSLRR 231 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~ 231 (439)
+++|++|++++|.++.+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|.... ..|..+..+ +|+.
T Consensus 101 l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp CTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred cCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 8888888888888877776654 678888888877 455544 47778888888888776522 344455555 7777
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccE
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 311 (439)
|+++.|.... ++..+. ++|+.|++++|.... ..+..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 177 L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~--------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 177 LRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA--------IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp CBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC--------CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred EECcCCCCCc-cCcccc--CCCCEEECCCCcCCc--------cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 7776665543 222222 455555555542111 11123444455555555555444432334445555555
Q ss_pred EeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCc
Q 044264 312 LTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTI 390 (439)
Q Consensus 312 L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 390 (439)
|++++|... .+|. +..+++|+.|++++|. ++.++...+.. ..
T Consensus 246 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~-----------------------------------~~ 288 (332)
T 2ft3_A 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCP-----------------------------------VG 288 (332)
T ss_dssp EECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSC-----------------------------------SS
T ss_pred EECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccChhHccc-----------------------------------cc
Confidence 555555443 2322 4444455555554444 22222211100 00
Q ss_pred ccccCcccceeeecccccc--cCCCCCCCCCCCccEEEEcCCc
Q 044264 391 KGEIMPRLSSLCIARCPTL--RALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 391 ~~~~~p~L~~L~i~~c~~l--~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
....+++|+.|++.+++.. ...|..+..+++|+.+++++|.
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 0012466777777777543 2234455667777778777764
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=4e-25 Score=206.04 Aligned_cols=239 Identities=19% Similarity=0.167 Sum_probs=147.8
Q ss_pred ceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccc
Q 044264 75 NVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEK 154 (439)
Q Consensus 75 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 154 (439)
+++.+.+.......+|..+. +.++.|++++|. +....+..|..+++|++|++++ +.+....|..+..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-----ITEIKDGDFKNLKNLHTLILIN------NKISKISPGAFAP 98 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-----CCCBCTTTTTTCTTCCEEECCS------SCCCCBCTTTTTT
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCc-----CCEeChhhhccCCCCCEEECCC------CcCCeeCHHHhcC
Confidence 55666666666677776543 578888888876 4555555677888888888887 6644444677778
Q ss_pred ccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccc--cCCcccccCccccc
Q 044264 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLR--YLPAGIERLTSLRR 231 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~ 231 (439)
+++|++|++++|.++.+|..+. ++|++|++++|. +..++ ..+..+++|++|++++|.... ..+..+..+++|+.
T Consensus 99 l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 99 LVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCCEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 8888888888888877776554 678888888877 44443 457778888888888776432 34455666777777
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccE
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 311 (439)
|++..|.... ++..+. ++|+.|++++|.... ..+..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 176 L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 176 IRIADTNITT-IPQGLP--PSLTELHLDGNKITK--------VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244 (330)
T ss_dssp EECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE--------ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred EECCCCcccc-CCcccc--ccCCEEECCCCcCCc--------cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence 7776665442 222222 556666665553111 11234455556666666665555543334555556666
Q ss_pred EeecCCCCCCcCC-CCCCcCCcCeeeecccc
Q 044264 312 LTLSHCINCEHLP-PLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 312 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 341 (439)
|++++|... .+| .+..+++|+.|++++|.
T Consensus 245 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred EECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence 666655544 233 25555556666555554
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=2.2e-24 Score=201.08 Aligned_cols=290 Identities=19% Similarity=0.180 Sum_probs=221.3
Q ss_pred CeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccC-ChhHh
Q 044264 98 RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL-PETLC 176 (439)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~ 176 (439)
+++.+++.++. ...+|..+ .+.|++|++++ +.+....+..+..+++|++|++++|.++.+ |..++
T Consensus 32 ~l~~l~~~~~~------l~~lp~~~--~~~l~~L~L~~------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLG------LEKVPKDL--PPDTALLDLQN------NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSC------CCSCCCSC--CTTCCEEECCS------SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CCeEEEecCCC------ccccCccC--CCCCeEEECCC------CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc
Confidence 68889998876 23344322 37899999999 774444445789999999999999998877 77899
Q ss_pred hccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeecccc--ccccccccccCcc
Q 044264 177 ELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGV--ARSSELENKKNLI 254 (439)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~ 254 (439)
++++|++|++++|. +..+|..+. ++|++|++++|......+..+..+++|+.|++..|.... ..+..+..+++|+
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 99999999999998 778887654 799999999998654444568899999999999887753 5667789999999
Q ss_pred eeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCC-CCCCcCCcC
Q 044264 255 DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLP-PLGKLPSLE 333 (439)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 333 (439)
.|+++++... .++..+ .++|++|++++|.+....+..+..+++|+.|++++|......+ .+..+++|+
T Consensus 175 ~L~l~~n~l~---------~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 175 YIRIADTNIT---------TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp EEECCSSCCC---------SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred EEECCCCccc---------cCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence 9999988422 222222 3799999999999888767788899999999999998876655 388899999
Q ss_pred eeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCc---ccccCcccceeeeccccccc
Q 044264 334 QLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTI---KGEIMPRLSSLCIARCPTLR 410 (439)
Q Consensus 334 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~---~~~~~p~L~~L~i~~c~~l~ 410 (439)
.|++++|. +..++.. +..+++|++|+++++. ++.++..... .....+.|+.|++.+++...
T Consensus 244 ~L~L~~N~-l~~lp~~--------------l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 244 ELHLNNNK-LVKVPGG--------------LADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp EEECCSSC-CSSCCTT--------------TTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred EEECCCCc-CccCChh--------------hccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccc
Confidence 99999997 5455543 5668999999999873 5555433221 11235889999999997532
Q ss_pred -CC-CCCCCCCCCccEEEEcCCc
Q 044264 411 -AL-PDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 411 -~l-~~~l~~~~~L~~L~i~~c~ 431 (439)
.+ |..+..+++|+.+++++|+
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC----
T ss_pred cccCccccccccceeEEEecccC
Confidence 23 4567779999999998874
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=2.1e-24 Score=219.20 Aligned_cols=146 Identities=20% Similarity=0.164 Sum_probs=119.8
Q ss_pred EEeeCCCCCccccc-cCCceeEEEEEcCCCCCcC-cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCc
Q 044264 58 TVEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFP-ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAM 135 (439)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 135 (439)
..++.+.....+|. .+..++.+.+..+.+..++ .+|.++++|++|++++|. +....+..|..+++|++|+|++
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-----i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-----CCCcChhHhcCCCCCCEEEccC
Confidence 34555555555554 5678999999999998886 478899999999999997 5666677899999999999999
Q ss_pred cccccccccccccc-cccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCccc-ccchhhhhccccceeeccC
Q 044264 136 FQMWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLK-ELPQGFGKLINLMYLLNRG 212 (439)
Q Consensus 136 ~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~l~~~i~~l~~L~~L~l~~ 212 (439)
|. +..+| ..|..+++|++|++++|.++.+|+ .++++++|++|++++|.... ..|..++.+++|++|++++
T Consensus 110 ------N~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 110 ------NP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp ------CC-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred ------Cc-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 77 44454 568899999999999999998886 58999999999999998332 4677889999999999998
Q ss_pred ccc
Q 044264 213 TES 215 (439)
Q Consensus 213 ~~~ 215 (439)
|..
T Consensus 183 N~l 185 (635)
T 4g8a_A 183 NKI 185 (635)
T ss_dssp SCC
T ss_pred ccc
Confidence 864
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2e-24 Score=200.75 Aligned_cols=232 Identities=20% Similarity=0.196 Sum_probs=196.7
Q ss_pred ccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccc
Q 044264 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEK 234 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 234 (439)
..+++.|+++++.++.+|..++++++|++|++++|. +..+|..++++++|++|++++|.. ..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEEC
Confidence 478999999999999999999999999999999998 568999999999999999999985 488988999999999999
Q ss_pred eeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEee
Q 044264 235 FVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314 (439)
Q Consensus 235 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l 314 (439)
++|...+..+..+... .+. ..+..+++|++|++++|.+..+ |..+..+++|+.|++
T Consensus 158 ~~n~~~~~~p~~~~~~------~~~-----------------~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 158 RACPELTELPEPLAST------DAS-----------------GEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKI 213 (328)
T ss_dssp EEETTCCCCCSCSEEE------C-C-----------------CCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEE
T ss_pred CCCCCccccChhHhhc------cch-----------------hhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEc
Confidence 9988776666544331 111 1245688999999999998865 889999999999999
Q ss_pred cCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCccccc
Q 044264 315 SHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEI 394 (439)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 394 (439)
++|.+....+.++.+++|+.|++++|...+.++.. +..+++|++|++++|.....++.. ...
T Consensus 214 ~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~--------------~~~l~~L~~L~L~~n~~~~~~p~~----~~~ 275 (328)
T 4fcg_A 214 RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI--------------FGGRAPLKRLILKDCSNLLTLPLD----IHR 275 (328)
T ss_dssp ESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC--------------TTCCCCCCEEECTTCTTCCBCCTT----GGG
T ss_pred cCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH--------------hcCCCCCCEEECCCCCchhhcchh----hhc
Confidence 99988754445889999999999999977766553 667899999999999877666533 267
Q ss_pred CcccceeeecccccccCCCCCCCCCCCccEEEEcCC
Q 044264 395 MPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 395 ~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c 430 (439)
+++|+.|++++|+.++.+|..+..+++|+.+++...
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 899999999999999999999999999999988743
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=3.6e-23 Score=192.99 Aligned_cols=267 Identities=17% Similarity=0.172 Sum_probs=209.9
Q ss_pred cCCceeEEEEEcCCCCCcC-cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGAPFP-ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
....++.+.+.++....++ ..+.++++|+.|++++|. +....|..|..+++|++|++++ +. +..+|.
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~------n~-l~~l~~ 119 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-----ISKIHEKAFSPLRKLQKLYISK------NH-LVEIPP 119 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-----CCEECGGGSTTCTTCCEEECCS------SC-CCSCCS
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-----cCccCHhHhhCcCCCCEEECCC------Cc-CCccCc
Confidence 3568999999999887774 478899999999999997 5667788899999999999999 77 556776
Q ss_pred ccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCccc--ccchhhhhccccceeeccCccccccCCcccccCc
Q 044264 151 NIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLK--ELPQGFGKLINLMYLLNRGTESLRYLPAGIERLT 227 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 227 (439)
.+. ++|++|++++|.++.+|. .+..+++|++|++++|.... ..|..+..+ +|++|++++|. +..+|..+. +
T Consensus 120 ~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~ 193 (332)
T 2ft3_A 120 NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--E 193 (332)
T ss_dssp SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--S
T ss_pred ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--C
Confidence 554 899999999999998876 58899999999999998422 456667777 99999999998 456776554 7
Q ss_pred ccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhccc
Q 044264 228 SLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLT 307 (439)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~ 307 (439)
+|++|++++|......+..+..+++|+.|++++|.... ..+..+..+++|++|++++|.+..+ |.++..++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~ 264 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM--------IENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLK 264 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC--------CCTTGGGGCTTCCEEECCSSCCCBC-CTTGGGCT
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc--------CChhHhhCCCCCCEEECCCCcCeec-ChhhhcCc
Confidence 99999999998887777889999999999999985221 1123567889999999999999876 88899999
Q ss_pred CccEEeecCCCCCCcCCC-CCC------cCCcCeeeeccccCee-EeCCccccccCCCCCCCCCCcCCCCcceeeccCC
Q 044264 308 DLRILTLSHCINCEHLPP-LGK------LPSLEQLYFYSMGSVK-RVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDM 378 (439)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~-~~~------l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 378 (439)
+|+.|++++|.+....+. +.. .++|+.|++.+|+... .++. ..+..++.|+.++++++
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~-------------~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP-------------ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG-------------GGGTTBCCSTTEEC---
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc-------------ccccccchhhhhhcccc
Confidence 999999999987644332 322 4678999999987321 1111 12455677777777665
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=8e-23 Score=198.12 Aligned_cols=310 Identities=20% Similarity=0.224 Sum_probs=193.8
Q ss_pred EeeCCCCCccccccCCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccc
Q 044264 59 VEIDGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQM 138 (439)
Q Consensus 59 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 138 (439)
.+..+.....++....+++.+.+..+....+|.. .++|+.|++++|. +.+ ++. ..++|++|++++
T Consensus 76 L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-----l~~-l~~---~~~~L~~L~L~~--- 140 (454)
T 1jl5_A 76 LELNNLGLSSLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-----LKA-LSD---LPPLLEYLGVSN--- 140 (454)
T ss_dssp EECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-----CSC-CCS---CCTTCCEEECCS---
T ss_pred EEecCCccccCCCCcCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-----cCc-ccC---CCCCCCEEECcC---
Confidence 3444444445555667889998888888777753 3788999998886 222 221 126899999988
Q ss_pred ccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcccccc
Q 044264 139 WSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRY 218 (439)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~ 218 (439)
|. +..+| .++.+++|++|++++|.++.+|..+ .+|++|++++|. +..+| .++.+++|++|++++|.. ..
T Consensus 141 ---n~-l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l-~~ 209 (454)
T 1jl5_A 141 ---NQ-LEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSL-KK 209 (454)
T ss_dssp ---SC-CSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCC-SS
T ss_pred ---CC-CCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcC-Cc
Confidence 66 44577 4888999999999999888887643 588999999887 66677 588899999999988874 44
Q ss_pred CCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCcc
Q 044264 219 LPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV 298 (439)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 298 (439)
+|.. .++|+.|++++|... .++ .++.+++|+.|++++|... .++ ..+++|++|++++|....+
T Consensus 210 l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~---------~l~---~~~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 210 LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK---------TLP---DLPPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS---------SCC---SCCTTCCEEECCSSCCSCC
T ss_pred CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC---------ccc---ccccccCEEECCCCccccc
Confidence 5543 258888888888765 444 4888888999998887422 111 1246788888888877764
Q ss_pred CCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCcc-------ccccCCCCCCCCCCcCCCCcc
Q 044264 299 HPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEF-------LGVESDHGRASSSVVAFPKLK 371 (439)
Q Consensus 299 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~l~~L~ 371 (439)
|.. +++|+.|++++|.... ++.+ .++|+.|++++|. +..++... +..+...+ . -..+++|+
T Consensus 273 -~~~---~~~L~~L~ls~N~l~~-l~~~--~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~-l---p~~~~~L~ 340 (454)
T 1jl5_A 273 -PEL---PQSLTFLDVSENIFSG-LSEL--PPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIE-L---PALPPRLE 340 (454)
T ss_dssp -CCC---CTTCCEEECCSSCCSE-ESCC--CTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSC-C---CCCCTTCC
T ss_pred -Ccc---cCcCCEEECcCCccCc-ccCc--CCcCCEEECcCCc-CCcccCCcCcCCEEECCCCcccc-c---cccCCcCC
Confidence 543 3677888888776543 2211 1456666666554 22222110 00000000 0 11257788
Q ss_pred eeeccCCCCccccccCCCcccccCcccceeeeccccccc--CCCCCCCCC-------------CCccEEEEcCCc
Q 044264 372 TIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLR--ALPDHLLQT-------------TTLQKLEIWGCP 431 (439)
Q Consensus 372 ~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~--~l~~~l~~~-------------~~L~~L~i~~c~ 431 (439)
.|+++++ .++.++. .+++|+.|++++|+... .+|..+..+ ++|+.|++++|+
T Consensus 341 ~L~L~~N-~l~~lp~-------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 341 RLIASFN-HLAEVPE-------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp EEECCSS-CCSCCCC-------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred EEECCCC-ccccccc-------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 8888776 3444332 46888888888885434 466666655 788888888875
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.3e-23 Score=193.65 Aligned_cols=242 Identities=20% Similarity=0.152 Sum_probs=165.7
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccc--cccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFI--KEIPKNIEKL 155 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~l 155 (439)
.+.........+|..+. ++++.|++++|. +....+..|..+++|++|++++ +.+. ...+..+..+
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~-----l~~i~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~~~~ 77 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSS------NGLSFKGCCSQSDFGT 77 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSC-----CCCCCTTTTTTCTTCSEEECCS------SCCCEEEEEEHHHHSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCc-----cCccCHhHhhccccCCEEECCC------CccCcccCcccccccc
Confidence 44555555667776543 578888888876 4444444567888888888887 5522 2224556677
Q ss_pred cccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccc--hhhhhccccceeeccCccccccCCcccccCccccccc
Q 044264 156 VHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELP--QGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (439)
++|++|++++|.++.+|..+..+++|++|++++|. +..++ ..+..+++|++|++++|......+..+..+++|++|+
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 88888888888888887777788888888888877 55554 3577888888888888876555566677778888888
Q ss_pred ceeecccc-ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 234 KFVVGRGV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 234 l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
+.+|...+ ..+..+..+++|+.|++++|... ...+..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcC--------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 77776654 45666777777777777776321 1113455667777777777777766534456677777777
Q ss_pred eecCCCCCCcCCC-CCCcC-CcCeeeecccc
Q 044264 313 TLSHCINCEHLPP-LGKLP-SLEQLYFYSMG 341 (439)
Q Consensus 313 ~l~~~~~~~~~~~-~~~l~-~L~~L~l~~~~ 341 (439)
++++|......+. +..++ +|+.|++++|+
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 7777776655553 56664 77777777776
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.2e-23 Score=196.05 Aligned_cols=264 Identities=18% Similarity=0.181 Sum_probs=203.3
Q ss_pred EEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccccc
Q 044264 79 SMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158 (439)
Q Consensus 79 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L 158 (439)
..........+|..+. ++|++|++++|. +....+..+..+++|++|++++ +.+....+..+..+++|
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~-----i~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNR-----ITYISNSDLQRCVNLQALVLTS------NGINTIEEDSFSSLGSL 102 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTT------SCCCEECTTTTTTCTTC
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCc-----CcccCHHHhccCCCCCEEECCC------CccCccCHhhcCCCCCC
Confidence 4455666778887654 589999999987 5555555789999999999999 77444456678999999
Q ss_pred ceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch--hhhhccccceeeccCccccccC-CcccccCcccccccc
Q 044264 159 RYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ--GFGKLINLMYLLNRGTESLRYL-PAGIERLTSLRRVEK 234 (439)
Q Consensus 159 ~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~--~i~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l 234 (439)
++|++++|.++.+|.. ++++++|++|++++|. +..+|. .+..+++|++|++++|.....+ +..+..+++|++|++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 9999999999999876 8899999999999998 667776 6889999999999998645554 467889999999999
Q ss_pred eeeccccccccccccccCcceeeecccCCcchhccCChHHHH-HhCCCCCCccEEEEeeccCCccCCchhh---cccCcc
Q 044264 235 FVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVL-EALQPPPNLKHLGIHQYRGNNVHPHWMM---SLTDLR 310 (439)
Q Consensus 235 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~l~~~~~---~~~~L~ 310 (439)
.+|......+..+..+++|+.|+++++.. ..++ ..+..+++|++|++++|......+..+. ..+.++
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l---------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQH---------ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCS---------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCcc---------ccchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence 99988877788899999999999998842 2222 2234578999999999988775333332 466788
Q ss_pred EEeecCCCCCC----cCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 311 ILTLSHCINCE----HLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 311 ~L~l~~~~~~~----~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
.++++++.... .+|. +..+++|+.|++++|. ++.++... +..+++|++|++++++
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~-------------~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGI-------------FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTT-------------TTTCTTCCEEECCSSC
T ss_pred ccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHH-------------HhcCCCCCEEEeeCCC
Confidence 88888776543 2332 6678889999998887 55555432 3568889999998874
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=2.9e-23 Score=201.21 Aligned_cols=226 Identities=19% Similarity=0.136 Sum_probs=109.6
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCce-------------eEEeCCccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCL-------------RALDFAMFQMW 139 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~ 139 (439)
...++.+.+.......+|..+.++++|+.|++++|. +.+.+|..++.+++| +.|++++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~-----~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~---- 80 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE-----WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN---- 80 (454)
T ss_dssp ------------------------CCHHHHHHHHHH-----HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT----
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc-----ccccCCcccccchhcchhhhhhhhccCCCEEEecC----
Confidence 356888888888888899999999999999999875 677778777777664 7888887
Q ss_pred cccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccC
Q 044264 140 SWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYL 219 (439)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~ 219 (439)
+. ...+|.. .++|++|++++|.++.+|.. +.+|++|++++|. +..+|.. .++|++|++++|.. ..+
T Consensus 81 --~~-l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l-~~l 146 (454)
T 1jl5_A 81 --LG-LSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQL-EKL 146 (454)
T ss_dssp --SC-CSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCC-SSC
T ss_pred --Cc-cccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCC-CCC
Confidence 55 4444442 35677777777776666643 2556666666654 3333321 14566666655553 234
Q ss_pred CcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccC
Q 044264 220 PAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH 299 (439)
Q Consensus 220 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l 299 (439)
| .++.+++|++|++++|...+ ++.. .++|+.|++++|... .++ .+..+++|++|++++|.....
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~---------~l~-~~~~l~~L~~L~l~~N~l~~l- 210 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE---------ELP-ELQNLPFLTAIYADNNSLKKL- 210 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS---------SCC-CCTTCTTCCEEECCSSCCSSC-
T ss_pred c-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC---------cCc-cccCCCCCCEEECCCCcCCcC-
Confidence 4 35555666666655554432 2211 135555555554211 111 344555555555555554442
Q ss_pred CchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 300 PHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 300 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
|.. .++|+.|++++|... .+|.++.+++|+.|++++|.
T Consensus 211 ~~~---~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 211 PDL---PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC
T ss_pred CCC---cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCc
Confidence 322 135555555555443 34444555555555555543
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=4.1e-23 Score=188.29 Aligned_cols=222 Identities=17% Similarity=0.119 Sum_probs=134.0
Q ss_pred eEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccc
Q 044264 77 RHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156 (439)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 156 (439)
+.+.........+|..+ .++++.|+++++. +....+..|..+++|++|++++ +.+....|..+..++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~-----i~~~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR-----ISHVPAASFRACRNLTILWLHS------NVLARIDAAAFTGLA 80 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCS------SCCCEECTTTTTTCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc-----CCccCHHHcccCCCCCEEECCC------CccceeCHhhcCCcc
Confidence 44555555666666544 3578888888876 4555556677888888888887 664444466777888
Q ss_pred ccceeecCCCC-CccC-ChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccc
Q 044264 157 HLRYLNLSRLK-IEKL-PETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEK 234 (439)
Q Consensus 157 ~L~~L~L~~~~-~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 234 (439)
+|++|++++|. ++.+ |..+..+++|++|++++|......|..+..+++|++|++++|......+..+..+++|++|++
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 88888888886 7766 556777888888888887733333556777888888888877643333334666777777777
Q ss_pred eeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEee
Q 044264 235 FVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314 (439)
Q Consensus 235 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l 314 (439)
++|......+..+..+++|+.|++++|... ...+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVA--------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred CCCcccccCHHHhcCccccCEEECCCCccc--------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 666555433334555555555555554211 111233344444444444444444432223444444444444
Q ss_pred cCCCC
Q 044264 315 SHCIN 319 (439)
Q Consensus 315 ~~~~~ 319 (439)
++|..
T Consensus 233 ~~N~~ 237 (285)
T 1ozn_A 233 NDNPW 237 (285)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 44433
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=2.1e-22 Score=195.85 Aligned_cols=242 Identities=18% Similarity=0.143 Sum_probs=197.9
Q ss_pred eeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccc
Q 044264 76 VRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155 (439)
Q Consensus 76 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 155 (439)
.+.+.........+|..+. ++++.|++++|. +....+..|..+++|++|++++ |.+....+..+..+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~Ls~------n~i~~~~~~~~~~l 122 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENN-----IQMIQADTFRHLHHLEVLQLGR------NSIRQIEVGAFNGL 122 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSC-----CCEECTTTTTTCTTCCEEECCS------SCCCEECTTTTTTC
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCc-----CceECHHHcCCCCCCCEEECCC------CccCCcChhhccCc
Confidence 4556666667788887654 689999999987 6667778899999999999999 77555556778899
Q ss_pred cccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCc-ccccCcccccc
Q 044264 156 VHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPA-GIERLTSLRRV 232 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L 232 (439)
++|++|+|++|.++.+|.. +..+++|++|++++|. +..+|. .+.++++|+.|++++|..+..++. .+..+++|+.|
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 9999999999999988764 7889999999999998 556654 688999999999999877777664 47889999999
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
++++|..... ..+..+++|+.|++++|... ...+..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 202 ~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 202 NLGMCNIKDM--PNLTPLVGLEELEMSGNHFP--------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp ECTTSCCSSC--CCCTTCTTCCEEECTTSCCS--------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ECCCCccccc--ccccccccccEEECcCCcCc--------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 9998877543 45888999999999988522 2225668889999999999999888767778899999999
Q ss_pred eecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 313 TLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 313 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
++++|.+....+. +..+++|+.|++++|+
T Consensus 272 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 9999977654444 7889999999999887
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=3.1e-22 Score=193.91 Aligned_cols=242 Identities=18% Similarity=0.153 Sum_probs=193.2
Q ss_pred eeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccc
Q 044264 76 VRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155 (439)
Q Consensus 76 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 155 (439)
.+.+.........+|..+. ++++.|++++|. +....+..|..+++|++|++++ |.+....+..+..+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~Ls~------n~i~~i~~~~~~~l 111 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQ-----IQIIKVNSFKHLRHLEILQLSR------NHIRTIEIGAFNGL 111 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCC-----CCEECTTTTSSCSSCCEEECCS------SCCCEECGGGGTTC
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCc-----CCeeCHHHhhCCCCCCEEECCC------CcCCccChhhccCC
Confidence 4456666777788887664 689999999987 5666667789999999999998 77444455678889
Q ss_pred cccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCc-ccccCcccccc
Q 044264 156 VHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPA-GIERLTSLRRV 232 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L 232 (439)
++|++|+|++|.++.+|. .+..+++|++|++++|. +..++. .+..+++|++|++++|.....++. .+..+++|+.|
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 999999999999988876 58889999999999998 555554 688999999999998776666654 57889999999
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
++++|.... + ..+..+++|+.|++++|... ...+..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 191 ~L~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 191 NLAMCNLRE-I-PNLTPLIKLDELDLSGNHLS--------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp ECTTSCCSS-C-CCCTTCSSCCEEECTTSCCC--------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCcCcc-c-cccCCCcccCEEECCCCccC--------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 998887653 2 35788899999999988422 1224567888999999999998888767778889999999
Q ss_pred eecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 313 TLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 313 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
++++|.+....+. +..+++|+.|++++|+
T Consensus 261 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 9999977654444 7888999999999887
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=1.1e-24 Score=212.82 Aligned_cols=332 Identities=17% Similarity=0.114 Sum_probs=219.7
Q ss_pred CCceeEEEEEcCCCC-----CcCcccCCCCCeeEEEecCCCCChhhHhhh-hhHhhhcCC----ceeEEeCCcccccccc
Q 044264 73 GQNVRHSMVKLGKGA-----PFPISFCSVKRLRSLLIDDNGDDEFWLTEV-LPQLFDELT----CLRALDFAMFQMWSWN 142 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~----~L~~L~l~~~~~~~~~ 142 (439)
.++++.+.+..+... .++..+..+++|++|++++|. +... ....+..++ +|++|++++ |
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~L~~------n 95 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-----LGDVGVHCVLQGLQTPSCKIQKLSLQN------C 95 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-----CHHHHHHHHHHTTCSTTCCCCEEECTT------S
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-----CChHHHHHHHHHHhhCCCceeEEEccC------C
Confidence 456888899888875 446667788999999999987 3333 223334455 699999998 5
Q ss_pred ccc----cccccccccccccceeecCCCCCccC-ChhHhh-----ccCCcEeecCCCCccc----ccchhhhhcccccee
Q 044264 143 GFI----KEIPKNIEKLVHLRYLNLSRLKIEKL-PETLCE-----LYNLQLLNVESCQDLK----ELPQGFGKLINLMYL 208 (439)
Q Consensus 143 ~~~----~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~-----l~~L~~L~l~~~~~~~----~l~~~i~~l~~L~~L 208 (439)
.+. ..++..+..+++|++|++++|.++.. +..+.. .++|++|++++|.... .++..+..+++|++|
T Consensus 96 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 96 CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEE
T ss_pred CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEE
Confidence 533 24677788899999999999987632 223322 4579999999987433 245567788999999
Q ss_pred eccCccccccCCcccc-----cCcccccccceeeccccc----cccccccccCcceeeecccCCcchhccCChHHH-HHh
Q 044264 209 LNRGTESLRYLPAGIE-----RLTSLRRVEKFVVGRGVA----RSSELENKKNLIDLLLYFGHGNEERKRKKDEEV-LEA 278 (439)
Q Consensus 209 ~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~ 278 (439)
++++|......+..+. ..++|++|++++|..... ++..+..+++|+.|+++++..... ....+ ...
T Consensus 176 ~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~----~~~~l~~~~ 251 (461)
T 1z7x_W 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV----GMAELCPGL 251 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH----HHHHHHHHH
T ss_pred ECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH----HHHHHHHHH
Confidence 9999875333222232 256899999988877653 456677889999999988842110 11112 233
Q ss_pred CCCCCCccEEEEeeccCCcc----CCchhhcccCccEEeecCCCCCCcCC----C--CCCcCCcCeeeeccccCeeEeCC
Q 044264 279 LQPPPNLKHLGIHQYRGNNV----HPHWMMSLTDLRILTLSHCINCEHLP----P--LGKLPSLEQLYFYSMGSVKRVGD 348 (439)
Q Consensus 279 l~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~~~~~----~--~~~l~~L~~L~l~~~~~l~~~~~ 348 (439)
...+++|++|++++|.+... ++..+..+++|+.|++++|......+ . ....++|+.|++++|. +.....
T Consensus 252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 330 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACC 330 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHH
Confidence 44688999999999877762 25566678999999999987643211 1 2234689999999887 322111
Q ss_pred ccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCc--ccccCcccceeeeccccccc-----CCCCCCCCCCC
Q 044264 349 EFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTI--KGEIMPRLSSLCIARCPTLR-----ALPDHLLQTTT 421 (439)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~--~~~~~p~L~~L~i~~c~~l~-----~l~~~l~~~~~ 421 (439)
..+. ..+..+++|++|+++++ .+.+....... .....++|++|++++| .++ .+|..+..+++
T Consensus 331 ~~l~---------~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 331 SHFS---------SVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp HHHH---------HHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCC
T ss_pred HHHH---------HHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCC
Confidence 1111 01345688899998887 34332211000 0012568888888888 444 56666677888
Q ss_pred ccEEEEcCCc
Q 044264 422 LQKLEIWGCP 431 (439)
Q Consensus 422 L~~L~i~~c~ 431 (439)
|+.|++++|+
T Consensus 400 L~~L~l~~N~ 409 (461)
T 1z7x_W 400 LRELDLSNNC 409 (461)
T ss_dssp CCEEECCSSS
T ss_pred ccEEECCCCC
Confidence 8888888885
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.9e-22 Score=185.93 Aligned_cols=243 Identities=18% Similarity=0.154 Sum_probs=191.5
Q ss_pred eEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc-cccccccceeecCCCCCccC---ChhH
Q 044264 100 RSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN-IEKLVHLRYLNLSRLKIEKL---PETL 175 (439)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~l---p~~i 175 (439)
+.++..++. ...+|.. -.++|++|++++ +. +..+|.. +..+++|++|++++|.++.+ |..+
T Consensus 10 ~~l~c~~~~------l~~ip~~--~~~~l~~L~L~~------n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 10 TEIRCNSKG------LTSVPTG--IPSSATRLELES------NK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp TEEECCSSC------CSSCCSC--CCTTCCEEECCS------SC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CEEEcCCCC------cccCCCC--CCCCCCEEECCC------Cc-cCccCHhHhhccccCCEEECCCCccCcccCccccc
Confidence 456666654 2334432 236899999999 77 4556654 68999999999999998755 6778
Q ss_pred hhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCC-cccccCcccccccceeeccccccccccccccCcc
Q 044264 176 CELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRVEKFVVGRGVARSSELENKKNLI 254 (439)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 254 (439)
..+++|++|++++|. +..+|..+..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++|+
T Consensus 75 ~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 75 FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp HSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred ccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 889999999999998 77788889999999999999998543322 4688999999999999988777788899999999
Q ss_pred eeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCC-CCCCcCCcC
Q 044264 255 DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLP-PLGKLPSLE 333 (439)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 333 (439)
.|+++++.... ...+..+..+++|++|++++|.+....|..+..+++|+.|++++|.+....+ .+..+++|+
T Consensus 154 ~L~l~~n~l~~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 154 VLKMAGNSFQE-------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226 (306)
T ss_dssp EEECTTCEEGG-------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred EEECCCCcccc-------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence 99999884211 1245678889999999999999888767788899999999999998766544 378899999
Q ss_pred eeeeccccCeeEeCCccccccCCCCCCCCCCcCCC-CcceeeccCCC
Q 044264 334 QLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFP-KLKTIQFWDMY 379 (439)
Q Consensus 334 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~ 379 (439)
.|++++|......+.. +..+| +|++|++++++
T Consensus 227 ~L~L~~N~l~~~~~~~--------------~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQE--------------LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EEECTTSCCCBCSSSS--------------CCCCCTTCCEEECTTCC
T ss_pred EeECCCCCCcccCHHH--------------HHhhhccCCEEEccCCC
Confidence 9999999844332222 44564 89999999874
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=1.4e-23 Score=194.34 Aligned_cols=250 Identities=14% Similarity=0.067 Sum_probs=108.8
Q ss_pred hhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch
Q 044264 118 LPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ 197 (439)
Q Consensus 118 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~ 197 (439)
....+..+++|++|++++ +.+....|..+..+++|++|++++|.++.+++ +..+++|++|++++|. +..++
T Consensus 26 ~~~~~~~~~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~- 96 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSG------NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL- 96 (317)
T ss_dssp HHHHHTTGGGCSEEECTT------SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-
T ss_pred HHHHhccCCCCCEEECcC------CccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-
Confidence 333344444455555554 43222223344445555555555555443333 4444555555555544 33322
Q ss_pred hhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHH
Q 044264 198 GFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLE 277 (439)
Q Consensus 198 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 277 (439)
..++|++|++++|... .++. ..+++|+.|++++|......+..++.+++|+.|++++|.... ..+.
T Consensus 97 ---~~~~L~~L~l~~n~l~-~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~ 162 (317)
T 3o53_A 97 ---VGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--------VNFA 162 (317)
T ss_dssp ---ECTTCCEEECCSSCCS-EEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--------EEGG
T ss_pred ---CCCCcCEEECCCCccC-CcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--------ccHH
Confidence 2245555555544422 1111 123445555555544444444444455555555555442111 0011
Q ss_pred hC-CCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCC
Q 044264 278 AL-QPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESD 356 (439)
Q Consensus 278 ~l-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 356 (439)
.+ ..+++|++|++++|.+... +. ...+++|+.|++++|......+.+..+++|+.|++++|. +..++..
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~------- 232 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA------- 232 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT-------
T ss_pred HHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhH-------
Confidence 11 2344555555555555443 21 223555555555555444332334455555555555554 3334332
Q ss_pred CCCCCCCCcCCCCcceeeccCCCCc-cccccCCCcccccCcccceeeecccccccC
Q 044264 357 HGRASSSVVAFPKLKTIQFWDMYVL-KEWDYGDTIKGEIMPRLSSLCIARCPTLRA 411 (439)
Q Consensus 357 ~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~ 411 (439)
+..+++|+.|++++++-. ..++ .....+++|+.|++.++..++.
T Consensus 233 -------~~~l~~L~~L~l~~N~~~~~~~~----~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 233 -------LRFSQNLEHFDLRGNGFHCGTLR----DFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp -------CCCCTTCCEEECTTCCCBHHHHH----HHHHTCHHHHHHHHHHHHHHHS
T ss_pred -------hhcCCCCCEEEccCCCccCcCHH----HHHhccccceEEECCCchhccC
Confidence 233455555555554321 0100 0112345556666555554443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=189.02 Aligned_cols=265 Identities=16% Similarity=0.177 Sum_probs=207.8
Q ss_pred eeCCCCCccccc-cCCceeEEEEEcCCCCCcCc-ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccc
Q 044264 60 EIDGREEPFIDS-LGQNVRHSMVKLGKGAPFPI-SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQ 137 (439)
Q Consensus 60 ~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 137 (439)
+..+.....++. ....++.+.+.++....++. .+.++++|+.|++++|. +....+..|..+++|++|++++
T Consensus 37 ~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~Ls~-- 109 (353)
T 2z80_A 37 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-----INTIEEDSFSSLGSLEHLDLSY-- 109 (353)
T ss_dssp ECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECCS--
T ss_pred eCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-----cCccCHhhcCCCCCCCEEECCC--
Confidence 333333333433 45689999999999888876 78899999999999997 5666677799999999999999
Q ss_pred cccccccccccccc-cccccccceeecCCCCCccCCh--hHhhccCCcEeecCCCCccccc-chhhhhccccceeeccCc
Q 044264 138 MWSWNGFIKEIPKN-IEKLVHLRYLNLSRLKIEKLPE--TLCELYNLQLLNVESCQDLKEL-PQGFGKLINLMYLLNRGT 213 (439)
Q Consensus 138 ~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~l-~~~i~~l~~L~~L~l~~~ 213 (439)
|. +..++.. +..+++|++|++++|.++.+|. .+.++++|++|++++|.....+ +..++.+++|++|++++|
T Consensus 110 ----n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 110 ----NY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ----SC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ----Cc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 77 4455544 8899999999999999999987 7889999999999999546655 457899999999999999
Q ss_pred cccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeec
Q 044264 214 ESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQY 293 (439)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 293 (439)
......|..+..+++|++|++.+|.........+..+++|+.|+++++..... .............++.+++.++
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF-----HFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC-----CCC------CCCCCCEEEEESC
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc-----cccccccccccchhhccccccc
Confidence 87666688899999999999999887544444456789999999999853220 0001112345677889999887
Q ss_pred cCCc----cCCchhhcccCccEEeecCCCCCCcCCC--CCCcCCcCeeeeccccC
Q 044264 294 RGNN----VHPHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYSMGS 342 (439)
Q Consensus 294 ~~~~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~ 342 (439)
.... .+|.++..+++|+.|++++|... .+|. ++.+++|++|++++|+.
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence 7655 12667889999999999999877 4554 58999999999999973
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=1.4e-21 Score=198.39 Aligned_cols=145 Identities=21% Similarity=0.103 Sum_probs=119.4
Q ss_pred EcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccccccee
Q 044264 82 KLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYL 161 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 161 (439)
.+.....+|..+. +.+++|++++|. +....+..|..+++|++|+|++ |.+....+..|.++++|++|
T Consensus 39 ~~~~l~~vP~~lp--~~~~~LdLs~N~-----i~~l~~~~f~~l~~L~~L~Ls~------N~i~~i~~~~f~~L~~L~~L 105 (635)
T 4g8a_A 39 MELNFYKIPDNLP--FSTKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSR------CEIQTIEDGAYQSLSHLSTL 105 (635)
T ss_dssp TTSCCSSCCSSSC--TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTT------CCCCEECTTTTTTCTTCCEE
T ss_pred CCCCcCccCCCCC--cCCCEEEeeCCC-----CCCCCHHHHhCCCCCCEEECCC------CcCCCcChhHhcCCCCCCEE
Confidence 3445578887664 479999999998 6666777899999999999999 77333345568999999999
Q ss_pred ecCCCCCccCCh-hHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccc-cCCcccccCcccccccceeec
Q 044264 162 NLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLR-YLPAGIERLTSLRRVEKFVVG 238 (439)
Q Consensus 162 ~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 238 (439)
+|++|.++.+|+ .+.++++|++|++++|. +..+|. .++++++|++|++++|.... ..|..++.+++|++|+++.|.
T Consensus 106 ~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 106 ILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp ECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 999999999985 57999999999999998 666665 58999999999999998533 456778889999999988765
Q ss_pred cc
Q 044264 239 RG 240 (439)
Q Consensus 239 ~~ 240 (439)
..
T Consensus 185 l~ 186 (635)
T 4g8a_A 185 IQ 186 (635)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=2.4e-21 Score=193.54 Aligned_cols=256 Identities=21% Similarity=0.181 Sum_probs=154.5
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIE 153 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 153 (439)
..++.+.+.+.....+|..+. ++|+.|++++|. +. .+|. .+++|++|++++ |. +..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-----l~-~lp~---~l~~L~~L~Ls~------N~-l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-----LT-SLPA---LPPELRTLEVSG------NQ-LTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC-----CS-CCCC---CCTTCCEEEECS------CC-CSCCCC---
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCC-----CC-CCCC---cCCCCCEEEcCC------Cc-CCcCCC---
Confidence 457888888888888887665 788888888887 33 3443 567888888888 66 555665
Q ss_pred cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccc
Q 044264 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (439)
.+++|++|++++|.++.+|. .+++|++|++++|. +..+|.. +++|++|++++|.. ..+|. .+++|+.|+
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~---~~~~L~~L~ 167 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPA---LPSELCKLW 167 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCC---CCTTCCEEE
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCC---ccCCCCEEE
Confidence 67888888888888888876 56788888888887 6667763 47888888888763 44443 234566666
Q ss_pred ceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEe
Q 044264 234 KFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILT 313 (439)
Q Consensus 234 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~ 313 (439)
+.+|.... ++ ..+ ++|+.|++++|.+..+ |. .+++|+.|+
T Consensus 168 L~~N~l~~-l~---~~~--------------------------------~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~ 207 (622)
T 3g06_A 168 AYNNQLTS-LP---MLP--------------------------------SGLQELSVSDNQLASL-PT---LPSELYKLW 207 (622)
T ss_dssp CCSSCCSC-CC---CCC--------------------------------TTCCEEECCSSCCSCC-CC---CCTTCCEEE
T ss_pred CCCCCCCC-Cc---ccC--------------------------------CCCcEEECCCCCCCCC-CC---ccchhhEEE
Confidence 65554432 11 223 4455555555444443 32 124555555
Q ss_pred ecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccc
Q 044264 314 LSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGE 393 (439)
Q Consensus 314 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 393 (439)
+++|.+. .+|. .+++|+.|++++|. ++.++ ..+++|+.|+++++ .++.++.
T Consensus 208 L~~N~l~-~l~~--~~~~L~~L~Ls~N~-L~~lp-----------------~~l~~L~~L~Ls~N-~L~~lp~------- 258 (622)
T 3g06_A 208 AYNNRLT-SLPA--LPSGLKELIVSGNR-LTSLP-----------------VLPSELKELMVSGN-RLTSLPM------- 258 (622)
T ss_dssp CCSSCCS-SCCC--CCTTCCEEECCSSC-CSCCC-----------------CCCTTCCEEECCSS-CCSCCCC-------
T ss_pred CcCCccc-ccCC--CCCCCCEEEccCCc-cCcCC-----------------CCCCcCcEEECCCC-CCCcCCc-------
Confidence 5555433 2222 23455555555553 32222 11355555555554 3333321
Q ss_pred cCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 394 IMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 394 ~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
.+++|+.|++++| .++.+|..+..+++|+.|++++|+
T Consensus 259 ~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 3456666666665 455666555666666666666664
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=7.7e-23 Score=189.31 Aligned_cols=247 Identities=15% Similarity=0.083 Sum_probs=195.6
Q ss_pred cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC
Q 044264 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP 172 (439)
Q Consensus 93 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 172 (439)
+..+++|+.|++++|. +....|..+..+++|++|++++ |.+ ...++ +..+++|++|++++|.++.++
T Consensus 30 ~~~~~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~Ls~------n~l-~~~~~-~~~l~~L~~L~Ls~n~l~~l~ 96 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP-----LSQISAADLAPFTKLELLNLSS------NVL-YETLD-LESLSTLRTLDLNNNYVQELL 96 (317)
T ss_dssp HTTGGGCSEEECTTSC-----CCCCCHHHHTTCTTCCEEECTT------SCC-EEEEE-ETTCTTCCEEECCSSEEEEEE
T ss_pred hccCCCCCEEECcCCc-----cCcCCHHHhhCCCcCCEEECCC------CcC-Ccchh-hhhcCCCCEEECcCCcccccc
Confidence 4457789999999997 5667778899999999999999 763 33333 889999999999999988776
Q ss_pred hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeecccccccccc-cccc
Q 044264 173 ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSEL-ENKK 251 (439)
Q Consensus 173 ~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~ 251 (439)
. .++|++|++++|. +..++. ..+++|++|++++|......+..+..+++|+.|++++|......+..+ ..++
T Consensus 97 ~----~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 97 V----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp E----CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred C----CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 3 4899999999998 555543 347899999999998655555678889999999999998877666666 4789
Q ss_pred CcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCC
Q 044264 252 NLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPS 331 (439)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 331 (439)
+|+.|++++|.... + .....+++|++|++++|.+... |..+..+++|+.|++++|.+....+.+..+++
T Consensus 170 ~L~~L~L~~N~l~~---------~-~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~ 238 (317)
T 3o53_A 170 TLEHLNLQYNFIYD---------V-KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQN 238 (317)
T ss_dssp TCCEEECTTSCCCE---------E-ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTT
T ss_pred cCCEEECCCCcCcc---------c-ccccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcCCC
Confidence 99999999985332 1 2334589999999999999987 77788999999999999987743334888999
Q ss_pred cCeeeeccccCe-eEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCcccc
Q 044264 332 LEQLYFYSMGSV-KRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEW 384 (439)
Q Consensus 332 L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 384 (439)
|+.|++++|+.. ..++. + +..+++|+.|++.++..++..
T Consensus 239 L~~L~l~~N~~~~~~~~~-~-------------~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRD-F-------------FSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCEEECTTCCCBHHHHHH-H-------------HHTCHHHHHHHHHHHHHHHSS
T ss_pred CCEEEccCCCccCcCHHH-H-------------HhccccceEEECCCchhccCC
Confidence 999999999854 22222 1 456889999999876655443
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=188.19 Aligned_cols=242 Identities=21% Similarity=0.197 Sum_probs=194.0
Q ss_pred eeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC-hhHhh
Q 044264 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP-ETLCE 177 (439)
Q Consensus 99 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~ 177 (439)
.+.++..+.. ...+|..+ .++++.|++++ +.+....+..+..+++|++|+|++|.++.++ ..+.+
T Consensus 45 ~~~v~c~~~~------l~~iP~~~--~~~l~~L~L~~------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~ 110 (440)
T 3zyj_A 45 FSKVICVRKN------LREVPDGI--STNTRLLNLHE------NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110 (440)
T ss_dssp SCEEECCSCC------CSSCCSCC--CTTCSEEECCS------CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred CCEEEeCCCC------cCcCCCCC--CCCCcEEEccC------CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC
Confidence 4566666654 33445433 37899999999 7755555678999999999999999998776 57899
Q ss_pred ccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCcccccccceeeccccccc-cccccccCcce
Q 044264 178 LYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARS-SELENKKNLID 255 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~ 255 (439)
+++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|+.|++..+......+ ..+..+++|+.
T Consensus 111 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 111 LANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp CSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 9999999999998 666665 68999999999999998544444578899999999999866554444 46889999999
Q ss_pred eeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCe
Q 044264 256 LLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQ 334 (439)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~ 334 (439)
|++++|... .+ ..+..+++|++|++++|.+....|..+..+++|+.|++++|.+....+. +..+++|+.
T Consensus 190 L~L~~n~l~---------~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 190 LNLAMCNLR---------EI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp EECTTSCCS---------SC-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred ecCCCCcCc---------cc-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 999998532 22 2477889999999999999887678899999999999999988766554 889999999
Q ss_pred eeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 335 LYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 335 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
|++++|. +..++... +..+++|+.|++++++
T Consensus 260 L~L~~N~-l~~~~~~~-------------~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 260 INLAHNN-LTLLPHDL-------------FTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTSC-CCCCCTTT-------------TSSCTTCCEEECCSSC
T ss_pred EECCCCC-CCccChhH-------------hccccCCCEEEcCCCC
Confidence 9999997 55555432 5568999999998865
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=4e-21 Score=186.81 Aligned_cols=242 Identities=19% Similarity=0.173 Sum_probs=194.3
Q ss_pred eeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC-hhHhh
Q 044264 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP-ETLCE 177 (439)
Q Consensus 99 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~ 177 (439)
.+.++..+.. ...+|..+ .+++++|++++ +.+....+..+..+++|++|+|++|.++.++ ..+.+
T Consensus 56 ~~~v~c~~~~------l~~iP~~~--~~~l~~L~L~~------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 121 (452)
T 3zyi_A 56 FSKVVCTRRG------LSEVPQGI--PSNTRYLNLME------NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121 (452)
T ss_dssp SCEEECCSSC------CSSCCSCC--CTTCSEEECCS------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CcEEEECCCC------cCccCCCC--CCCccEEECcC------CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence 4566666654 23344322 36899999999 8755556778999999999999999998776 67899
Q ss_pred ccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCcccccccceeeccccccc-cccccccCcce
Q 044264 178 LYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARS-SELENKKNLID 255 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~ 255 (439)
+++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|+.|++..+.....++ ..+..+++|+.
T Consensus 122 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 122 LASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp CTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred cccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 9999999999998 666665 58899999999999998543334568899999999999866554444 46889999999
Q ss_pred eeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCe
Q 044264 256 LLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQ 334 (439)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~ 334 (439)
|++++|.... + ..+..+++|++|++++|.+....|..+..+++|+.|++++|.+....+. +..+++|+.
T Consensus 201 L~L~~n~l~~---------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 201 LNLGMCNIKD---------M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270 (452)
T ss_dssp EECTTSCCSS---------C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred EECCCCcccc---------c-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence 9999985322 2 3477889999999999999887788899999999999999988766554 889999999
Q ss_pred eeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 335 LYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 335 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
|++++|. +..++... +..+++|+.|++++++
T Consensus 271 L~L~~N~-l~~~~~~~-------------~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 271 LNLAHNN-LSSLPHDL-------------FTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECCSSC-CSCCCTTS-------------STTCTTCCEEECCSSC
T ss_pred EECCCCc-CCccChHH-------------hccccCCCEEEccCCC
Confidence 9999997 55555432 5568999999999865
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=4.4e-21 Score=174.83 Aligned_cols=219 Identities=19% Similarity=0.133 Sum_probs=143.2
Q ss_pred eEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccC-ChhHhhc
Q 044264 100 RSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL-PETLCEL 178 (439)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l 178 (439)
++++..++. ...+|. .-.++|+.|++++ +.+....+..+..+++|++|++++|.++.+ |..+..+
T Consensus 14 ~~~~c~~~~------l~~ip~--~~~~~l~~L~l~~------n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 79 (285)
T 1ozn_A 14 VTTSCPQQG------LQAVPV--GIPAASQRIFLHG------NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79 (285)
T ss_dssp CEEECCSSC------CSSCCT--TCCTTCSEEECTT------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred eEEEcCcCC------cccCCc--CCCCCceEEEeeC------CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence 455665554 223332 2346788888887 663333345677788888888888887766 5677788
Q ss_pred cCCcEeecCCCCccccc-chhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceee
Q 044264 179 YNLQLLNVESCQDLKEL-PQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLL 257 (439)
Q Consensus 179 ~~L~~L~l~~~~~~~~l-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 257 (439)
++|++|++++|..+..+ |..+..+++|++|++++|......|..+..+++|++|++.+|......+..++.+++|+.|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 88888888887644444 55677888888888888775544456677778888888777776655555567777777777
Q ss_pred ecccCCcchhccCChHHHH-HhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCee
Q 044264 258 LYFGHGNEERKRKKDEEVL-EALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQL 335 (439)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L 335 (439)
+++|... .++ ..+..+++|++|++++|.+....|..+..+++|+.|++++|.+....+. +..+++|+.|
T Consensus 160 l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 160 LHGNRIS---------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp CCSSCCC---------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred CCCCccc---------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 7766311 111 2355566777777777766665556666667777777777655543322 5666677777
Q ss_pred eecccc
Q 044264 336 YFYSMG 341 (439)
Q Consensus 336 ~l~~~~ 341 (439)
++++|+
T Consensus 231 ~l~~N~ 236 (285)
T 1ozn_A 231 RLNDNP 236 (285)
T ss_dssp ECCSSC
T ss_pred eccCCC
Confidence 776665
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=5.2e-22 Score=183.28 Aligned_cols=177 Identities=18% Similarity=0.118 Sum_probs=93.1
Q ss_pred cceeecCCCCCc--cCChhHh-------hccCCcEeecCCCCcccccchhh--hhccccceeeccCccccccCCcccccC
Q 044264 158 LRYLNLSRLKIE--KLPETLC-------ELYNLQLLNVESCQDLKELPQGF--GKLINLMYLLNRGTESLRYLPAGIERL 226 (439)
Q Consensus 158 L~~L~L~~~~~~--~lp~~i~-------~l~~L~~L~l~~~~~~~~l~~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~l 226 (439)
|++|++++|.++ .+|..+. ++++|++|++++|.....+|..+ +.+++|++|++++|.... .|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-SSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-hhHHHHHH
Confidence 555555555543 2343333 45555555555555333444433 455555555555554322 24444444
Q ss_pred -----cccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhC--CCCCCccEEEEeeccCCcc-
Q 044264 227 -----TSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEAL--QPPPNLKHLGIHQYRGNNV- 298 (439)
Q Consensus 227 -----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~- 298 (439)
++|++|++++|......+..++.+++|+.|++++|.... ...++..+ ..+++|++|++++|.+...
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG------ERGLISALCPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH------HHHHHHHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc------chHHHHHHHhccCCCCCEEECCCCcCcchH
Confidence 555555555555554444556666666666666653110 01123333 6677777777777776632
Q ss_pred -CC-chhhcccCccEEeecCCCCCCcCC--CCCCcCCcCeeeecccc
Q 044264 299 -HP-HWMMSLTDLRILTLSHCINCEHLP--PLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 299 -l~-~~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~ 341 (439)
++ ..+..+++|+.|++++|.+....+ .+..+++|+.|++++|.
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 01 122356777777777776655442 24455666666666665
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=9.7e-24 Score=206.00 Aligned_cols=337 Identities=15% Similarity=0.034 Sum_probs=227.4
Q ss_pred CCceeEEEEEcCCCCCcC--cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFP--ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
..+++.+.+.+......+ ..+..+++|+.|++++|..... ....++..+..+++|++|++++ +.+....+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~l~~~~~L~~L~Ls~------n~l~~~~~~ 74 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA-RCKDISSALRVNPALAELNLRS------NELGDVGVH 74 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH-HHHHHHHHHHTCTTCCEEECTT------CCCHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH-HHHHHHHHHHhCCCcCEEeCCC------CcCChHHHH
Confidence 356888889888765443 2256789999999999983111 1125677788999999999999 663332222
Q ss_pred cc-cccc----ccceeecCCCCCc-----cCChhHhhccCCcEeecCCCCcccccchhhh-----hccccceeeccCccc
Q 044264 151 NI-EKLV----HLRYLNLSRLKIE-----KLPETLCELYNLQLLNVESCQDLKELPQGFG-----KLINLMYLLNRGTES 215 (439)
Q Consensus 151 ~~-~~l~----~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~-----~l~~L~~L~l~~~~~ 215 (439)
.+ ..++ +|++|++++|.++ .+|..+..+++|++|++++|......+..+. ..++|++|++++|..
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 22 2344 7999999999977 5678889999999999999984333333333 245799999999975
Q ss_pred ccc----CCcccccCcccccccceeeccccccccccc-----cccCcceeeecccCCcchhccCChHHHHHhCCCCCCcc
Q 044264 216 LRY----LPAGIERLTSLRRVEKFVVGRGVARSSELE-----NKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLK 286 (439)
Q Consensus 216 ~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 286 (439)
... ++..+..+++|++|++++|...+.....+. ..++|+.|+++++.... .....++..+..+++|+
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~----~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS----DNCRDLCGIVASKASLR 230 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT----THHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH----HHHHHHHHHHHhCCCcc
Confidence 442 345567789999999999887654444443 25699999999885322 02234677777899999
Q ss_pred EEEEeeccCCccCC----c-hhhcccCccEEeecCCCCCCc----CCC-CCCcCCcCeeeeccccCeeEeCCccccccCC
Q 044264 287 HLGIHQYRGNNVHP----H-WMMSLTDLRILTLSHCINCEH----LPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESD 356 (439)
Q Consensus 287 ~L~l~~~~~~~~l~----~-~~~~~~~L~~L~l~~~~~~~~----~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 356 (439)
+|++++|....... . ....+++|+.|++++|..... ++. +..+++|+.|++++|. ++..+...+...
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~-- 307 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCET-- 307 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHH--
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHH--
Confidence 99999997654211 1 122588999999999976543 332 5668999999999997 332211111100
Q ss_pred CCCCCCCCcCCCCcceeeccCCCCccccccCC-CcccccCcccceeeecccccccCC-C----CCCC-CCCCccEEEEcC
Q 044264 357 HGRASSSVVAFPKLKTIQFWDMYVLKEWDYGD-TIKGEIMPRLSSLCIARCPTLRAL-P----DHLL-QTTTLQKLEIWG 429 (439)
Q Consensus 357 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~p~L~~L~i~~c~~l~~l-~----~~l~-~~~~L~~L~i~~ 429 (439)
-....++|++|++++|. +....... ......+++|++|++++| .+... + ..+. ..++|+.|++++
T Consensus 308 ------l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 308 ------LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp ------HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ------hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCC
Confidence 01224799999999985 33221100 011134699999999999 45432 1 2222 267999999999
Q ss_pred Cc
Q 044264 430 CP 431 (439)
Q Consensus 430 c~ 431 (439)
|.
T Consensus 380 n~ 381 (461)
T 1z7x_W 380 CD 381 (461)
T ss_dssp SC
T ss_pred CC
Confidence 95
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1e-20 Score=185.12 Aligned_cols=218 Identities=14% Similarity=0.092 Sum_probs=167.1
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChh
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET 174 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~ 174 (439)
.+++|+.|++++|. +....|..|..+++|++|++++ |.+....| +..+++|++|++++|.++.+|.
T Consensus 32 ~~~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNP-----LSQISAADLAPFTKLELLNLSS------NVLYETLD--LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp TGGGCCEEECCSSC-----CCCCCGGGGTTCTTCCEEECTT------SCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred cCCCccEEEeeCCc-----CCCCCHHHHhCCCCCCEEEeeC------CCCCCCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence 34489999999887 5666677788899999999988 66333333 7888999999999998887764
Q ss_pred HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccc-cccCc
Q 044264 175 LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELE-NKKNL 253 (439)
Q Consensus 175 i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L 253 (439)
.++|++|++++|. +..++. ..+++|+.|++++|......|..++.+++|+.|++++|...+..+..+. .+++|
T Consensus 98 ---~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 98 ---GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp ---CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred ---CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 3789999999888 555443 3568899999998886655666788889999999988888776777765 78889
Q ss_pred ceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcC
Q 044264 254 IDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLE 333 (439)
Q Consensus 254 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~ 333 (439)
+.|++++|.... + .....+++|+.|++++|.+... |..+..+++|+.|++++|.+....+.+..+++|+
T Consensus 172 ~~L~Ls~N~l~~---------~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 240 (487)
T 3oja_A 172 EHLNLQYNFIYD---------V-KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (487)
T ss_dssp CEEECTTSCCCE---------E-ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred cEEecCCCcccc---------c-cccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCC
Confidence 999998885322 1 2234578899999998888876 6668888889999999887765333477888888
Q ss_pred eeeeccccCe
Q 044264 334 QLYFYSMGSV 343 (439)
Q Consensus 334 ~L~l~~~~~l 343 (439)
.|++++|+..
T Consensus 241 ~L~l~~N~l~ 250 (487)
T 3oja_A 241 HFDLRGNGFH 250 (487)
T ss_dssp EEECTTCCBC
T ss_pred EEEcCCCCCc
Confidence 8888888743
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=7.1e-22 Score=182.38 Aligned_cols=243 Identities=17% Similarity=0.106 Sum_probs=171.9
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccc-ccccccccc-------cccccceeecCCC
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGF-IKEIPKNIE-------KLVHLRYLNLSRL 166 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~-------~l~~L~~L~L~~~ 166 (439)
..++|+.+++.+|. + .+|..+... |+.|++++ +.+ ...+|..+. .+++|++|++++|
T Consensus 41 ~~~~L~~l~l~~n~-----l--~~p~~~~~~--L~~L~L~~------n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 105 (312)
T 1wwl_A 41 GGRSLEYLLKRVDT-----E--ADLGQFTDI--IKSLSLKR------LTVRAARIPSRILFGALRVLGISGLQELTLENL 105 (312)
T ss_dssp EEEECTTHHHHCCT-----T--CCCHHHHHH--HHHCCCCE------EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred cCCCceeEeecccc-----c--ccHHHHHHH--Hhhccccc------ccccCCCcCHHHHHHHHHhcCcCCccEEEccCC
Confidence 44567777777775 2 444434333 88888887 553 123444443 5788888888888
Q ss_pred CCc-cCChhH--hhccCCcEeecCCCCcccccchhhhhc-----cccceeeccCccccccCCcccccCcccccccceeec
Q 044264 167 KIE-KLPETL--CELYNLQLLNVESCQDLKELPQGFGKL-----INLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVG 238 (439)
Q Consensus 167 ~~~-~lp~~i--~~l~~L~~L~l~~~~~~~~l~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 238 (439)
.++ .+|..+ ..+++|++|++++|. +...|..++.+ ++|++|++++|......|..++.+++|++|++++|.
T Consensus 106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 106 EVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp BCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred cccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 876 677665 788888888888887 55557777777 888888888888655555778888888888888887
Q ss_pred cccc--ccccc--ccccCcceeeecccCCcchhccCChHHHH-HhCCCCCCccEEEEeeccCCccCC-chhhcccCccEE
Q 044264 239 RGVA--RSSEL--ENKKNLIDLLLYFGHGNEERKRKKDEEVL-EALQPPPNLKHLGIHQYRGNNVHP-HWMMSLTDLRIL 312 (439)
Q Consensus 239 ~~~~--~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L 312 (439)
..+. .+..+ ..+++|+.|++++|.... ...++ ..+..+++|++|++++|.+....| ..+..+++|+.|
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMET------PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCC------HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcc------hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence 5443 23333 788999999999885321 12333 344678899999999998887533 345567999999
Q ss_pred eecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCC
Q 044264 313 TLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDM 378 (439)
Q Consensus 313 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 378 (439)
++++|.+. .+|. +. ++|+.|++++|. ++.++. +..+++|++|+++++
T Consensus 259 ~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~-l~~~p~---------------~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 259 NLSFTGLK-QVPKGLP--AKLSVLDLSYNR-LDRNPS---------------PDELPQVGNLSLKGN 306 (312)
T ss_dssp ECTTSCCS-SCCSSCC--SEEEEEECCSSC-CCSCCC---------------TTTSCEEEEEECTTC
T ss_pred ECCCCccC-hhhhhcc--CCceEEECCCCC-CCCChh---------------HhhCCCCCEEeccCC
Confidence 99999876 5554 44 899999999987 444432 445777888888775
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1.7e-22 Score=203.57 Aligned_cols=177 Identities=13% Similarity=0.080 Sum_probs=91.0
Q ss_pred CCceeEEEEEcCCCCCc-CcccCC-CCC-eeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccc--
Q 044264 73 GQNVRHSMVKLGKGAPF-PISFCS-VKR-LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE-- 147 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~-~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-- 147 (439)
...++.+.+..+..... +..+.. ++. |++|++.+|. ......++.....+++|++|++++ |.+...
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~---~~~~~~l~~~~~~~~~L~~L~L~~------~~~~~~~~ 181 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS---GFTTDGLLSIVTHCRKIKTLLMEE------SSFSEKDG 181 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE---EEEHHHHHHHHHHCTTCSEEECTT------CEEECCCS
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC---CcCHHHHHHHHhhCCCCCEEECcc------ccccCcch
Confidence 45677777776643211 112222 233 7777777664 112233444455677777777776 332111
Q ss_pred --cccccccccccceeecCCCCCc-----cCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccc-----
Q 044264 148 --IPKNIEKLVHLRYLNLSRLKIE-----KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTES----- 215 (439)
Q Consensus 148 --~~~~~~~l~~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~----- 215 (439)
++.....+++|++|+++++.++ .++..+.++++|+.|++++|. ...+|..+..+++|++|+++....
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCT
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchH
Confidence 2223345566666666666654 333444556666666666655 444555555555555555542110
Q ss_pred ---------------------cccCCcccccCcccccccceeeccccccc-cccccccCcceeeec
Q 044264 216 ---------------------LRYLPAGIERLTSLRRVEKFVVGRGVARS-SELENKKNLIDLLLY 259 (439)
Q Consensus 216 ---------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~ 259 (439)
...+|..+..+++|++|++++|....... ..+..+++|+.|++.
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 12233344556677777776665332222 234556666666665
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=8.9e-20 Score=182.25 Aligned_cols=251 Identities=20% Similarity=0.190 Sum_probs=194.9
Q ss_pred EEeeCCCCCccccc-cCCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcc
Q 044264 58 TVEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMF 136 (439)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 136 (439)
..+..+.....++. ...+++.+.+.++....+|. .+++|++|++++|. +. .+|. .+++|++|++++
T Consensus 44 ~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-----l~-~lp~---~l~~L~~L~Ls~- 110 (622)
T 3g06_A 44 VLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-----LT-SLPV---LPPGLLELSIFS- 110 (622)
T ss_dssp EEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-----CS-CCCC---CCTTCCEEEECS-
T ss_pred EEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-----CC-cCCC---CCCCCCEEECcC-
Confidence 34444444444443 45789999999999998887 57899999999997 33 3444 779999999999
Q ss_pred ccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcccc
Q 044264 137 QMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESL 216 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~ 216 (439)
|. +..+|. .+++|++|++++|.++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|. +
T Consensus 111 -----N~-l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~-l 173 (622)
T 3g06_A 111 -----NP-LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQ-L 173 (622)
T ss_dssp -----CC-CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-C
T ss_pred -----Cc-CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCC-C
Confidence 76 555665 578899999999999999874 4899999999998 677775 45789999999987 4
Q ss_pred ccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCC
Q 044264 217 RYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGN 296 (439)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 296 (439)
..+| ..+++|+.|++++|.... ++. ..++|+.|++++|... .++ ..+++|+.|++++|.+.
T Consensus 174 ~~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~---------~l~---~~~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 174 TSLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT---------SLP---ALPSGLKELIVSGNRLT 234 (622)
T ss_dssp SCCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS---------SCC---CCCTTCCEEECCSSCCS
T ss_pred CCCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc---------ccC---CCCCCCCEEEccCCccC
Confidence 5676 457899999999887654 222 3478999999988422 111 23588999999999888
Q ss_pred ccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeecc
Q 044264 297 NVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFW 376 (439)
Q Consensus 297 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 376 (439)
.+ | ..+++|+.|++++|.+. .+|. .+++|+.|++++|. +..+|.. +..+++|+.|+++
T Consensus 235 ~l-p---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~-L~~lp~~--------------l~~l~~L~~L~L~ 292 (622)
T 3g06_A 235 SL-P---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQ-LTRLPES--------------LIHLSSETTVNLE 292 (622)
T ss_dssp CC-C---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC-CCSCCGG--------------GGGSCTTCEEECC
T ss_pred cC-C---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCC-CCcCCHH--------------HhhccccCEEEec
Confidence 75 6 46689999999999765 4555 67899999999997 5566543 5668999999999
Q ss_pred CCC
Q 044264 377 DMY 379 (439)
Q Consensus 377 ~~~ 379 (439)
+++
T Consensus 293 ~N~ 295 (622)
T 3g06_A 293 GNP 295 (622)
T ss_dssp SCC
T ss_pred CCC
Confidence 875
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=5.4e-21 Score=187.08 Aligned_cols=242 Identities=13% Similarity=0.061 Sum_probs=186.3
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
...+++|+.|++++ +.+....|..+..+++|++|+|++|.++..++ ++.+++|++|++++|. +..+|.
T Consensus 30 ~~~~~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~---- 97 (487)
T 3oja_A 30 RQSAWNVKELDLSG------NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV---- 97 (487)
T ss_dssp STTGGGCCEEECCS------SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----
T ss_pred cccCCCccEEEeeC------CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----
Confidence 33455899999999 77555556789999999999999999987665 8999999999999998 666553
Q ss_pred ccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCC-
Q 044264 202 LINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQ- 280 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~- 280 (439)
.++|++|++++|.... ++. ..+++|+.|++++|...+..+..++.+++|+.|++++|.... ..+..+.
T Consensus 98 ~~~L~~L~L~~N~l~~-~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~l~~ 166 (487)
T 3oja_A 98 GPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--------VNFAELAA 166 (487)
T ss_dssp CTTCCEEECCSSCCCC-EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE--------EEGGGGGG
T ss_pred CCCcCEEECcCCcCCC-CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC--------cChHHHhh
Confidence 4899999999998543 332 357899999999999888888889999999999999985322 1233443
Q ss_pred CCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCC
Q 044264 281 PPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRA 360 (439)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 360 (439)
.+++|++|++++|.+... +. ...+++|+.|++++|.+....+.+..+++|+.|++++|. +..+|..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~----------- 232 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA----------- 232 (487)
T ss_dssp GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT-----------
T ss_pred hCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Ccccchh-----------
Confidence 688999999999998875 33 446899999999999887655568889999999999988 5556653
Q ss_pred CCCCcCCCCcceeeccCCCCc-cccccCCCcccccCcccceeeecccc
Q 044264 361 SSSVVAFPKLKTIQFWDMYVL-KEWDYGDTIKGEIMPRLSSLCIARCP 407 (439)
Q Consensus 361 ~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~p~L~~L~i~~c~ 407 (439)
+..+++|+.|++++++-. ..++ .....++.|+.+.+..+.
T Consensus 233 ---l~~l~~L~~L~l~~N~l~c~~~~----~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 233 ---LRFSQNLEHFDLRGNGFHCGTLR----DFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp ---CCCCTTCCEEECTTCCBCHHHHH----HHHTTCHHHHHHHHHHHH
T ss_pred ---hccCCCCCEEEcCCCCCcCcchH----HHHHhCCCCcEEeccccc
Confidence 456789999999987533 1111 112456778888776443
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=5.9e-22 Score=199.55 Aligned_cols=204 Identities=13% Similarity=0.068 Sum_probs=111.4
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhc-CCc-eeEEeCCccccccccccccccccccccccccceeecCCCCCcc--
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDE-LTC-LRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEK-- 170 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-- 170 (439)
.+++|++|+++++. +....+..+.. ++. |++|++++|..++ ...++.....+++|++|++++|.++.
T Consensus 110 ~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~L~~~~~~~----~~~l~~~~~~~~~L~~L~L~~~~~~~~~ 180 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLKLDKCSGFT----TDGLLSIVTHCRKIKTLLMEESSFSEKD 180 (592)
T ss_dssp HCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEEEESCEEEE----HHHHHHHHHHCTTCSEEECTTCEEECCC
T ss_pred hCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEECcCCCCcC----HHHHHHHHhhCCCCCEEECccccccCcc
Confidence 56777888887775 33333333333 334 7777777632100 11233333467778888887776542
Q ss_pred ---CChhHhhccCCcEeecCCCCcc----cccchhhhhccccceeeccCccccccCCcccccCcccccccceeecc----
Q 044264 171 ---LPETLCELYNLQLLNVESCQDL----KELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR---- 239 (439)
Q Consensus 171 ---lp~~i~~l~~L~~L~l~~~~~~----~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---- 239 (439)
++..+..+++|++|++++|... ..++..+.++++|++|++++|.. ..+|..+..+++|+.|.+..+..
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccch
Confidence 3344566777888888777632 23445556777788888777653 33455555566666665542111
Q ss_pred ----------------------ccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCc
Q 044264 240 ----------------------GVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN 297 (439)
Q Consensus 240 ----------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 297 (439)
....+..+..+++|++|+++++.. ....+...+..+++|++|++.++....
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l-------~~~~~~~~~~~~~~L~~L~L~~~~~~~ 332 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL-------ETEDHCTLIQKCPNLEVLETRNVIGDR 332 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC-------CHHHHHHHHTTCTTCCEEEEEGGGHHH
T ss_pred HHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC-------CHHHHHHHHHhCcCCCEEeccCccCHH
Confidence 123344455677777777777641 112333445566666666665322211
Q ss_pred cCCchhhcccCccEEeec
Q 044264 298 VHPHWMMSLTDLRILTLS 315 (439)
Q Consensus 298 ~l~~~~~~~~~L~~L~l~ 315 (439)
.++.....+++|++|+++
T Consensus 333 ~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp HHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHhCCCCCEEEee
Confidence 112222345555555555
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=6.1e-20 Score=166.39 Aligned_cols=156 Identities=20% Similarity=0.123 Sum_probs=107.7
Q ss_pred CCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecC
Q 044264 85 KGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLS 164 (439)
Q Consensus 85 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 164 (439)
....+|..+. +.++.|++++|. +....+..+..+++|++|++++ +.+....+..+..+++|++|+++
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~-----l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSR------CEIQTIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCC-----CCEECTTTTTTCTTCSEEECTT------CCCCEECTTTTTTCTTCCEEECT
T ss_pred CccccCCCCC--CCccEEECCCCc-----ccccCHhHhccccCCcEEECCC------CcCCccCHHHccCCcCCCEEECC
Confidence 3455666543 468888888876 4555555677888888888888 66333344467788888888888
Q ss_pred CCCCccCC-hhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccc-cCCcccccCcccccccceeecccc
Q 044264 165 RLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLR-YLPAGIERLTSLRRVEKFVVGRGV 241 (439)
Q Consensus 165 ~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~ 241 (439)
+|.++.++ ..+.++++|++|++++|. +..++. .++.+++|++|++++|.... .+|..+..+++|++|++++|....
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 88877665 467788888888888887 444443 57788888888888877533 256677777777777777776655
Q ss_pred ccccccccccCcc
Q 044264 242 ARSSELENKKNLI 254 (439)
Q Consensus 242 ~~~~~l~~l~~L~ 254 (439)
..+..+..+++|+
T Consensus 164 ~~~~~~~~l~~L~ 176 (276)
T 2z62_A 164 IYCTDLRVLHQMP 176 (276)
T ss_dssp ECGGGGHHHHTCT
T ss_pred CCHHHhhhhhhcc
Confidence 4444555554444
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=2.5e-19 Score=162.33 Aligned_cols=204 Identities=18% Similarity=0.099 Sum_probs=122.1
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLIN 204 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~ 204 (439)
+.|++|++++ +.+....+..+..+++|++|++++|.++.++. .+.++++|++|++++|......+..+..+++
T Consensus 28 ~~l~~L~ls~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSF------NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTT------CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCccEEECCC------CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 4688888887 66333333467778888888888888776654 5777888888888887733333456777888
Q ss_pred cceeeccCccccccCCcccccCcccccccceeecccc-ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCC
Q 044264 205 LMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP 283 (439)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (439)
|++|++++|......+..++.+++|++|++++|.... ..+..++.+++|+.|++++|.... ........+..++
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~ 176 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-----IYCTDLRVLHQMP 176 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-----ECGGGGHHHHTCT
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-----CCHHHhhhhhhcc
Confidence 8888888776543333356777777777777776654 245666677777777776663221 0000011112222
Q ss_pred Ccc-EEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 284 NLK-HLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 284 ~L~-~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
.|. +|++++|.+... +.......+|+.|++++|......+. +..+++|+.|++++|+
T Consensus 177 ~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TCCEEEECCSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ccceeeecCCCccccc-CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 222 566666665554 33333344566666666654433322 4556666666666655
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=3.2e-19 Score=164.12 Aligned_cols=175 Identities=17% Similarity=0.146 Sum_probs=98.7
Q ss_pred cccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
+..+++|++|++++|.++.++. +..+++|++|++++|. +..++ .+..+++|++|++++|.. ..++. +..+++|+.
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCE
Confidence 4444555555555555444444 4445555555555544 33333 244455555555555442 22322 444555555
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccE
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 311 (439)
|++++|......+ ++.+++|+.|++++|... .++. +..+++|+.|++++|.+... + .+..+++|+.
T Consensus 134 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~---------~~~~-l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~ 199 (308)
T 1h6u_A 134 LYLDLNQITNISP--LAGLTNLQYLSIGNAQVS---------DLTP-LANLSKLTTLKADDNKISDI-S-PLASLPNLIE 199 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCC---------CCGG-GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCE
T ss_pred EECCCCccCcCcc--ccCCCCccEEEccCCcCC---------CChh-hcCCCCCCEEECCCCccCcC-h-hhcCCCCCCE
Confidence 5555444432211 555666666666665311 1112 56677888888888877764 3 3678888888
Q ss_pred EeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeC
Q 044264 312 LTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVG 347 (439)
Q Consensus 312 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 347 (439)
|++++|.... ++.+..+++|+.|++++|+ +...+
T Consensus 200 L~L~~N~l~~-~~~l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 200 VHLKNNQISD-VSPLANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp EECTTSCCCB-CGGGTTCTTCCEEEEEEEE-EECCC
T ss_pred EEccCCccCc-cccccCCCCCCEEEccCCe-eecCC
Confidence 8888887654 3347778888888888887 44443
No 74
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.5e-20 Score=179.06 Aligned_cols=243 Identities=16% Similarity=0.090 Sum_probs=162.0
Q ss_pred CCcCcccCCCCCeeEEEecCCCCChhhHhhh----hhHhhhcCCceeEEeCCccccccccccccccccc-------cccc
Q 044264 87 APFPISFCSVKRLRSLLIDDNGDDEFWLTEV----LPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN-------IEKL 155 (439)
Q Consensus 87 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------~~~l 155 (439)
..++..+..+++|+.|++++|. +... ++..+..+++|++|++++|.+ +.+...+|.. +..+
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~---~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNT-----IGTEAARWLSENIASKKDLEIAEFSDIFT---GRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSE-----ECHHHHHHHHHTTTTCTTCCEEECCSCCT---TSCGGGSHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCccEEECCCCC-----CCHHHHHHHHHHHHhCCCccEEeCccccc---CccccchhHHHHHHHHHHhhC
Confidence 4455566677888888888886 3333 344466788888888888432 2222233333 3678
Q ss_pred cccceeecCCCCCcc-----CChhHhhccCCcEeecCCCCcccc----cchhhhhc---------cccceeeccCcccc-
Q 044264 156 VHLRYLNLSRLKIEK-----LPETLCELYNLQLLNVESCQDLKE----LPQGFGKL---------INLMYLLNRGTESL- 216 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~----l~~~i~~l---------~~L~~L~l~~~~~~- 216 (439)
++|++|+|++|.++. +|..+..+++|++|++++|..... ++..+..+ ++|++|++++|...
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 888888888888765 677788888888888888874322 33334444 78888888888753
Q ss_pred ccCC---cccccCcccccccceeeccccc-----cccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEE
Q 044264 217 RYLP---AGIERLTSLRRVEKFVVGRGVA-----RSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHL 288 (439)
Q Consensus 217 ~~~~---~~~~~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 288 (439)
..+| ..+..+++|++|++.+|..... .+..+..+++|+.|++++|.... .....++..+..+++|++|
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----LGSSALAIALKSWPNLREL 249 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----HHHHHHHHHGGGCTTCCEE
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc----HHHHHHHHHHccCCCcCEE
Confidence 2233 3456778888888888766532 22267778888888888774110 0125566777788888888
Q ss_pred EEeeccCCcc----CCchhh--cccCccEEeecCCCCCC----cCCC-C-CCcCCcCeeeecccc
Q 044264 289 GIHQYRGNNV----HPHWMM--SLTDLRILTLSHCINCE----HLPP-L-GKLPSLEQLYFYSMG 341 (439)
Q Consensus 289 ~l~~~~~~~~----l~~~~~--~~~~L~~L~l~~~~~~~----~~~~-~-~~l~~L~~L~l~~~~ 341 (439)
++++|.+... ++..+. .+++|+.|++++|.+.. .++. + .++++|+.|++++|.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 8888877652 234443 37888888888887665 2443 3 456888888888877
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=9.9e-19 Score=157.80 Aligned_cols=176 Identities=20% Similarity=0.179 Sum_probs=87.3
Q ss_pred ccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchh-hhhccccceeeccCccccccCCcccccCcccccccc
Q 044264 157 HLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEK 234 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 234 (439)
+|++|++++|.++.+|. .+.++++|++|++++|. +..+|.. +..+++|++|++++|......+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 44445555444444442 34444455555554444 3333332 244445555555444422211222344444555544
Q ss_pred eeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEee
Q 044264 235 FVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314 (439)
Q Consensus 235 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l 314 (439)
.+|......+..+..+++|+.|+++++.... .....+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCc--------cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 4444433333344455555555555542110 00122455666666666666666553344666777777777
Q ss_pred cCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 315 SHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 315 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
++|......+. +..+++|+.|++++|+
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 189 DNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 77765543332 5667777777777765
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=8.8e-21 Score=191.05 Aligned_cols=136 Identities=17% Similarity=0.079 Sum_probs=81.0
Q ss_pred CCceeEEEEEcCCCCCc-CcccC-CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPF-PISFC-SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
..+++++.+.++..... +..+. .+++|++|++.+|. ......++..+..+++|++|++++|.+.+ .. ...++.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~i~~-~~-~~~l~~ 178 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDD-VS-GHWLSH 178 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE---EEEHHHHHHHHHHCTTCCEEECTTCEEEC-CC-GGGGGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC---CCCHHHHHHHHHhCCCCCEEeCcCCccCC-cc-hHHHHH
Confidence 45677777776654221 22222 46788888888773 11222355556678888888888733110 00 112333
Q ss_pred ccccccccceeecCCCC--Cc--cCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCc
Q 044264 151 NIEKLVHLRYLNLSRLK--IE--KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGT 213 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~--~~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~ 213 (439)
....+++|++|++++|. ++ .++..+.++++|++|++++|.....+|..+..+++|++|+++.+
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 33466788888888876 21 23333456788888888887545556666777777777765543
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=4.5e-20 Score=172.27 Aligned_cols=149 Identities=16% Similarity=0.092 Sum_probs=91.6
Q ss_pred CeeEEEecCCCCChhhHhhhhhHhhhcC--CceeEEeCCccccccccccccccccccccccccceeecCCCCCcc--CCh
Q 044264 98 RLRSLLIDDNGDDEFWLTEVLPQLFDEL--TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEK--LPE 173 (439)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--lp~ 173 (439)
.++.++++++. +. +..+..+ +.++.|++++ +. +...+..+..+++|++|++++|.++. +|.
T Consensus 48 ~~~~l~l~~~~-----~~---~~~~~~~~~~~l~~L~l~~------n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 112 (336)
T 2ast_B 48 LWQTLDLTGKN-----LH---PDVTGRLLSQGVIAFRCPR------SF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112 (336)
T ss_dssp TSSEEECTTCB-----CC---HHHHHHHHHTTCSEEECTT------CE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred hheeecccccc-----CC---HHHHHhhhhccceEEEcCC------cc-ccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence 47778887765 22 3345555 7788888887 65 33333345677888888888887652 667
Q ss_pred hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcccccc--CCcccccCcccccccceee-ccccc-ccccccc
Q 044264 174 TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRY--LPAGIERLTSLRRVEKFVV-GRGVA-RSSELEN 249 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~ 249 (439)
.+..+++|++|++++|......+..++.+++|++|++++|..+.. ++..+..+++|++|++.+| ...+. .+..+..
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 777888888888888874445666777788888888887743331 3344555666666666555 33321 2333444
Q ss_pred cc-Ccceeeeccc
Q 044264 250 KK-NLIDLLLYFG 261 (439)
Q Consensus 250 l~-~L~~L~l~~~ 261 (439)
++ +|++|+++++
T Consensus 193 l~~~L~~L~l~~~ 205 (336)
T 2ast_B 193 VSETITQLNLSGY 205 (336)
T ss_dssp SCTTCCEEECCSC
T ss_pred cccCCCEEEeCCC
Confidence 44 4444444443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=4.1e-19 Score=160.50 Aligned_cols=180 Identities=23% Similarity=0.196 Sum_probs=91.3
Q ss_pred cccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCcccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTSLR 230 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (439)
+..+++|++|++++|.++.++ .++.+++|++|++++|. +..++. .+..+++|++|++++|......+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 444555555555555554443 44455555555555554 333322 244555555555555543222222344555555
Q ss_pred cccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCcc
Q 044264 231 RVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLR 310 (439)
Q Consensus 231 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 310 (439)
+|++.+|......+..++.+++|+.|++++|.... ..+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCc--------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 55555554443333334455555555555542110 1112345566666666666666665344456677777
Q ss_pred EEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeC
Q 044264 311 ILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVG 347 (439)
Q Consensus 311 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 347 (439)
.|++++|... +.+++|+.|+++.|.....+|
T Consensus 209 ~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 209 YIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp EEECCSSCBC------CCTTTTHHHHHHHHHTGGGBB
T ss_pred EEEccCCCcc------ccCcHHHHHHHHHHhCCCccc
Confidence 7777776443 345566677666665444443
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=6.5e-19 Score=160.47 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=15.8
Q ss_pred CCCccEEEEeeccCCccCCchhhcccCccEEeecCCC
Q 044264 282 PPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCI 318 (439)
Q Consensus 282 ~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 318 (439)
+++|+.|++++|.+..+ |..+...++|+.|++++|.
T Consensus 171 l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 171 LENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred cCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCC
Confidence 34444444444444433 4444444444444444443
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=3.2e-19 Score=166.47 Aligned_cols=229 Identities=18% Similarity=0.082 Sum_probs=138.2
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhh-hhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEV-LPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..++.+.+........+..+..+++|++|++++|. +... ++..+..+++|++|++++ +.+....+..+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-----l~~~~~~~~~~~~~~L~~L~L~~------~~l~~~~~~~l 138 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-----IEVSTLHGILSQCSKLQNLSLEG------LRLSDPIVNTL 138 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-----ECHHHHHHHHTTBCCCSEEECTT------CBCCHHHHHHH
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC-----cCHHHHHHHHhhCCCCCEEeCcC------cccCHHHHHHH
Confidence 45666666666555555556677788888887775 3333 666677778888888877 55444556667
Q ss_pred ccccccceeecCCC-CCc--cCChhHhhccCCcEeecCCCCcccc--cchhhhhcc-ccceeeccCcc-cc--ccCCccc
Q 044264 153 EKLVHLRYLNLSRL-KIE--KLPETLCELYNLQLLNVESCQDLKE--LPQGFGKLI-NLMYLLNRGTE-SL--RYLPAGI 223 (439)
Q Consensus 153 ~~l~~L~~L~L~~~-~~~--~lp~~i~~l~~L~~L~l~~~~~~~~--l~~~i~~l~-~L~~L~l~~~~-~~--~~~~~~~ 223 (439)
..+++|++|++++| .++ .++..+.++++|++|++++|..+.. ++..+..++ +|++|++++|. .. ..+|..+
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 77778888888887 465 3666677778888888887722432 566677777 78888887774 12 2344455
Q ss_pred ccCcccccccceeec-cccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCch
Q 044264 224 ERLTSLRRVEKFVVG-RGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHW 302 (439)
Q Consensus 224 ~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~ 302 (439)
..+++|+.|++++|. ..+..+..+..+++|+.|+++++... .......+..+++|++|++++| .. ...
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-------~~~~~~~l~~~~~L~~L~l~~~-i~---~~~ 287 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI-------IPETLLELGEIPTLKTLQVFGI-VP---DGT 287 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC-------CGGGGGGGGGCTTCCEEECTTS-SC---TTC
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC-------CHHHHHHHhcCCCCCEEeccCc-cC---HHH
Confidence 667777777777666 44455556666666666666665311 1111223445566666666655 11 122
Q ss_pred hhcc-cCccEEeecCCCCCCcCC
Q 044264 303 MMSL-TDLRILTLSHCINCEHLP 324 (439)
Q Consensus 303 ~~~~-~~L~~L~l~~~~~~~~~~ 324 (439)
+..+ ..++.|++++|.+.+..|
T Consensus 288 ~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 288 LQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp HHHHHHHSTTSEESCCCSCCTTC
T ss_pred HHHHHhhCcceEEecccCccccC
Confidence 2222 224444455555544444
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=2.1e-18 Score=157.15 Aligned_cols=200 Identities=19% Similarity=0.100 Sum_probs=167.5
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..+++.+.+.......+|..+. +.++.|++++|. +....+..|..+++|++|++++ +. +..++..
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~L~~------n~-l~~~~~~- 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-----LYTFSLATLMPYTRLTQLNLDR------AE-LTKLQVD- 73 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-----CSEEEGGGGTTCTTCCEEECTT------SC-CCEEECC-
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-----CCccCHHHhhcCCCCCEEECCC------Cc-cCcccCC-
Confidence 4568888888888888987764 689999999998 5666778899999999999999 77 5555543
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|......+..+..+++|+.
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 78999999999999999999999999999999999998 66665 57899999999999999854433445788999999
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCc
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN 297 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 297 (439)
|++++|.........+..+++|+.|++++|. ...++..+...++|+.|++.+|....
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~---------l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENS---------LYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSC---------CCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCc---------CCccChhhcccccCCeEEeCCCCccC
Confidence 9999998876666667899999999999984 33456667778899999999987754
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=3.4e-18 Score=154.33 Aligned_cols=199 Identities=24% Similarity=0.248 Sum_probs=106.2
Q ss_pred eeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc-cccc
Q 044264 76 VRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK-NIEK 154 (439)
Q Consensus 76 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~ 154 (439)
.+.+.+.......+|..+. +.++.|+++++. +....+..|..+++|++|++++ +. +..++. .+..
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~------n~-l~~i~~~~~~~ 83 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-----LSSLPSKAFHRLTKLRLLYLND------NK-LQTLPAGIFKE 83 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-----CSCCCTTSSSSCTTCCEEECCS------SC-CSCCCTTTTSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCC-----CCeeCHHHhcCCCCCCEEECCC------Cc-cCeeChhhhcC
Confidence 3445555555555554433 456666666654 3333334455566666666655 44 223332 2345
Q ss_pred ccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccccCCcccccCcccccc
Q 044264 155 LVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRV 232 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (439)
+++|++|++++|.++.+|. .+..+++|++|++++|. +..++ ..+..+++|++|++++|.
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~------------------ 144 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE------------------ 144 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC------------------
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc------------------
Confidence 5666666666666555543 33555566666665555 33332 234555555555555554
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
.....+..+..+++|+.|+++++.... ..+..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 145 ------l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 145 ------LQSLPKGVFDKLTSLKELRLYNNQLKR--------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp ------CCCCCTTTTTTCTTCCEEECCSSCCSC--------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ------CCccCHhHccCCcccceeEecCCcCcE--------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 332222334444555555554442110 011235566777777777777776534456778888999
Q ss_pred eecCCCCCC
Q 044264 313 TLSHCINCE 321 (439)
Q Consensus 313 ~l~~~~~~~ 321 (439)
++++|....
T Consensus 211 ~l~~N~~~c 219 (270)
T 2o6q_A 211 QLQENPWDC 219 (270)
T ss_dssp ECCSSCBCC
T ss_pred EecCCCeeC
Confidence 998886543
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=2e-18 Score=158.78 Aligned_cols=171 Identities=19% Similarity=0.230 Sum_probs=82.1
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
+..+++|++|++++ |. +..++. +..+++|++|++++|.++.++ .+..+++|++|++++|. +..++. +..
T Consensus 59 ~~~l~~L~~L~L~~------n~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~ 127 (308)
T 1h6u_A 59 VQYLNNLIGLELKD------NQ-ITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAG 127 (308)
T ss_dssp GGGCTTCCEEECCS------SC-CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC-CCCCGG-GTT
T ss_pred hhccCCCCEEEccC------Cc-CCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC-CCCchh-hcC
Confidence 44445555555554 33 222333 444555555555555544443 34445555555555544 333332 444
Q ss_pred ccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCC
Q 044264 202 LINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQP 281 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 281 (439)
+++|++|++++|.. ..++. +..+++|+.|++++|...+..+ +..+++|+.|++++|.... ++ .+..
T Consensus 128 l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---------~~-~l~~ 193 (308)
T 1h6u_A 128 LSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD---------IS-PLAS 193 (308)
T ss_dssp CTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---------CG-GGGG
T ss_pred CCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc---------Ch-hhcC
Confidence 55555555555442 22222 4445555555555444332111 4555555555555553111 11 1445
Q ss_pred CCCccEEEEeeccCCccCCchhhcccCccEEeecCCCC
Q 044264 282 PPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCIN 319 (439)
Q Consensus 282 ~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 319 (439)
+++|++|++++|.+... + .+..+++|+.|++++|..
T Consensus 194 l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 194 LPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEEEE
T ss_pred CCCCCEEEccCCccCcc-c-cccCCCCCCEEEccCCee
Confidence 56666666666666553 2 355666666666666654
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=2.7e-18 Score=155.08 Aligned_cols=163 Identities=21% Similarity=0.239 Sum_probs=76.0
Q ss_pred cccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTSL 229 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 229 (439)
+..+++|++|++++|.++.++.. ++++++|++|++++|. +..++. .++.+++|++|++++|......+..+..+++|
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 44445555555555554444332 3444555555555544 223222 24445555555555544222222223445555
Q ss_pred ccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCc
Q 044264 230 RRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDL 309 (439)
Q Consensus 230 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L 309 (439)
+.|++++|......+..++.+++|+.|++++|... ...+..+..+++|+.|++++|.... .+++|
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l 224 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK--------SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGI 224 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTT
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC--------ccCHHHHhCCcCCCEEEccCCCccc-------cCcHH
Confidence 55555554444333334455555555555554211 1111234555666666666554433 34556
Q ss_pred cEEeecCCCCCCcCCC-CCCcC
Q 044264 310 RILTLSHCINCEHLPP-LGKLP 330 (439)
Q Consensus 310 ~~L~l~~~~~~~~~~~-~~~l~ 330 (439)
+.|+++.|.....+|. ++.++
T Consensus 225 ~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHHHHHHhCCCcccCcccccC
Confidence 6666666665555554 44443
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=156.08 Aligned_cols=159 Identities=12% Similarity=0.016 Sum_probs=101.0
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc--ccccccceeecCCCCCccC-
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI--EKLVHLRYLNLSRLKIEKL- 171 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~l- 171 (439)
+...++.+.+.++......+... .. +..+++|++|++++ +.+.+..|..+ ..+++|++|++++|.++..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~-~~-~~~~~~L~~L~l~~------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGA-LR-VLAYSRLKELTLED------LKITGTMPPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHH-HH-HHHHSCCCEEEEES------CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred hhcceeEEEEeCCcCCHHHHHHH-HH-hcccCceeEEEeeC------CEeccchhhhhhhccCCCCCEEEeecccccchh
Confidence 34457888888876322222222 22 22446799999998 77666677776 8899999999999997742
Q ss_pred C----hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcccccc--C--CcccccCcccccccceeecccc--
Q 044264 172 P----ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRY--L--PAGIERLTSLRRVEKFVVGRGV-- 241 (439)
Q Consensus 172 p----~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~-- 241 (439)
+ ..+..+++|++|++++|......|..++.+++|++|++++|..... + +..+..+++|++|++++|....
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 2 2344688999999998884444456778888999999988874321 1 1223567777777777665531
Q ss_pred cccc-ccccccCcceeeeccc
Q 044264 242 ARSS-ELENKKNLIDLLLYFG 261 (439)
Q Consensus 242 ~~~~-~l~~l~~L~~L~l~~~ 261 (439)
..+. .++.+++|++|++++|
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTS
T ss_pred HHHHHHHhcCCCCCEEECCCC
Confidence 1111 1244455555555554
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=9.4e-20 Score=183.53 Aligned_cols=226 Identities=16% Similarity=0.094 Sum_probs=143.8
Q ss_pred CCceeEEEEEcCCCC----CcCc------------ccCCCCCeeEEEecCCCCChhhHhhhhhHhhh-cCCceeEEeCCc
Q 044264 73 GQNVRHSMVKLGKGA----PFPI------------SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFD-ELTCLRALDFAM 135 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~----~~~~------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~ 135 (439)
..+++.+.+.++... -.|. ....+++|++|+++++. +....+..+. .+++|++|++++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-----~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-----VTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-----CCHHHHHHHHHHCTTCCEEEEES
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-----EcHHHHHHHHHhCCCCcEEeCCC
Confidence 467888988876531 1111 12357899999999987 4444444454 789999999998
Q ss_pred cccccccccccc--cccccccccccceeecCCCCCcc-----CChhHhhccCCcEeecCCCC-cc--cccchhhhhcccc
Q 044264 136 FQMWSWNGFIKE--IPKNIEKLVHLRYLNLSRLKIEK-----LPETLCELYNLQLLNVESCQ-DL--KELPQGFGKLINL 205 (439)
Q Consensus 136 ~~~~~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~-~~--~~l~~~i~~l~~L 205 (439)
|..+.. ++..+..+++|++|++++|.++. ++.....+++|+.|++++|. .. ..++..+.++++|
T Consensus 140 ------~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L 213 (594)
T 2p1m_B 140 ------CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213 (594)
T ss_dssp ------CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTC
T ss_pred ------cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCC
Confidence 522332 45555689999999999998653 33333467899999999986 11 1233334678999
Q ss_pred ceeeccCccccccCCcccccCcccccccceeecc------------------------------ccccccccccccCcce
Q 044264 206 MYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR------------------------------GVARSSELENKKNLID 255 (439)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------------------------------~~~~~~~l~~l~~L~~ 255 (439)
++|++++|.....+|..+..+++|+.|++..+.. ...++..+..+++|+.
T Consensus 214 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~ 293 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293 (594)
T ss_dssp CEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCE
T ss_pred cEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCE
Confidence 9999999855555666666777777776443311 0122223346778888
Q ss_pred eeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecC
Q 044264 256 LLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSH 316 (439)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 316 (439)
|+++++.. ....+...+..+++|++|++.++.....++.....+++|+.|++.+
T Consensus 294 L~L~~~~l-------~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 294 LNLSYATV-------QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp EECTTCCC-------CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EEccCCCC-------CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence 88887741 2233445566778888888887622111122223567777777743
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.1e-17 Score=148.00 Aligned_cols=59 Identities=19% Similarity=0.098 Sum_probs=30.0
Q ss_pred CCcceeeccCCCCccccccCCCcccccC-cccceeeecccccccCCCCCCCCCCCccEEEEcCCcc
Q 044264 368 PKLKTIQFWDMYVLKEWDYGDTIKGEIM-PRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPN 432 (439)
Q Consensus 368 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~-p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~~ 432 (439)
++|++|+++++..++.++... ...+ ++|++|+++++ .++.+|.. .+++|+.|++.++..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~---~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDA---FGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTT---TTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcccCCHHH---hhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccC
Confidence 455555555554344433211 1234 56666666665 45555543 566666666666654
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=2.9e-18 Score=163.15 Aligned_cols=256 Identities=15% Similarity=0.041 Sum_probs=188.0
Q ss_pred CCceeEEEEEcCCCCC-----cCcccCCCCCeeEEEecCCCCChhhHhhh-------hhHhhhcCCceeEEeCCcccccc
Q 044264 73 GQNVRHSMVKLGKGAP-----FPISFCSVKRLRSLLIDDNGDDEFWLTEV-------LPQLFDELTCLRALDFAMFQMWS 140 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~ 140 (439)
...++.+.+.++.... ++..+..+++|++|++++|..+ .+.+. +...+..+++|++|++++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~--~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~----- 103 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG--RVKDEIPEALRLLLQALLKCPKLHTVRLSD----- 103 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT--SCGGGSHHHHHHHHHHHTTCTTCCEEECCS-----
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC--ccccchhHHHHHHHHHHhhCCcccEEECCC-----
Confidence 4568888888776643 3445778999999999997521 12222 334457899999999999
Q ss_pred cccccc----ccccccccccccceeecCCCCCc-----cCChhHhhc---------cCCcEeecCCCCcc-cccc---hh
Q 044264 141 WNGFIK----EIPKNIEKLVHLRYLNLSRLKIE-----KLPETLCEL---------YNLQLLNVESCQDL-KELP---QG 198 (439)
Q Consensus 141 ~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~-----~lp~~i~~l---------~~L~~L~l~~~~~~-~~l~---~~ 198 (439)
|.+.. .+|..+..+++|++|+|++|.++ .++..+..+ ++|++|++++|... ..+| ..
T Consensus 104 -n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 -NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp -CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred -CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 66433 47778889999999999999986 334445555 89999999999843 3444 46
Q ss_pred hhhccccceeeccCccccc-----cCCcccccCcccccccceeeccc----cccccccccccCcceeeecccCCcchhcc
Q 044264 199 FGKLINLMYLLNRGTESLR-----YLPAGIERLTSLRRVEKFVVGRG----VARSSELENKKNLIDLLLYFGHGNEERKR 269 (439)
Q Consensus 199 i~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 269 (439)
+..+++|++|++++|.... ..|..+..+++|+.|+++.|... ..++..+..+++|+.|++++|.....
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~--- 259 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR--- 259 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH---
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh---
Confidence 7789999999999997532 23337889999999999999875 55677889999999999999853210
Q ss_pred CChHHHHHhC--CCCCCccEEEEeeccCCc----cCCchh-hcccCccEEeecCCCCCCcCC---C-CCCcCCcCeeeec
Q 044264 270 KKDEEVLEAL--QPPPNLKHLGIHQYRGNN----VHPHWM-MSLTDLRILTLSHCINCEHLP---P-LGKLPSLEQLYFY 338 (439)
Q Consensus 270 ~~~~~~~~~l--~~~~~L~~L~l~~~~~~~----~l~~~~-~~~~~L~~L~l~~~~~~~~~~---~-~~~l~~L~~L~l~ 338 (439)
....++..+ ..+++|++|++++|.+.. .+|..+ ..+++|+.|++++|.+....+ . ...+++++.+.+.
T Consensus 260 -~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 260 -GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp -HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred -hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 112355666 459999999999999887 237776 568999999999998876553 1 2234556555554
Q ss_pred cc
Q 044264 339 SM 340 (439)
Q Consensus 339 ~~ 340 (439)
..
T Consensus 339 ~~ 340 (386)
T 2ca6_A 339 EL 340 (386)
T ss_dssp CC
T ss_pred hc
Confidence 43
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=4.7e-18 Score=150.48 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=43.0
Q ss_pred CCCCCCcc-EEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCC-C-CCCc-CCcCeeeeccccCeeEeCCcccccc
Q 044264 279 LQPPPNLK-HLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLP-P-LGKL-PSLEQLYFYSMGSVKRVGDEFLGVE 354 (439)
Q Consensus 279 l~~~~~L~-~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~-~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~ 354 (439)
+..+++|+ +|++++|.+..+ |......++|+.|++++|.....++ . +..+ ++|+.|++++|. ++.++..
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i-~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~----- 223 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSV-QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK----- 223 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEE-CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT-----
T ss_pred ccchhcceeEEEcCCCCCccc-CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh-----
Confidence 33445555 555555555443 3333333566666666664222332 2 5556 666666666665 3334321
Q ss_pred CCCCCCCCCCcCCCCcceeeccCCCC
Q 044264 355 SDHGRASSSVVAFPKLKTIQFWDMYV 380 (439)
Q Consensus 355 ~~~~~~~~~~~~l~~L~~L~l~~~~~ 380 (439)
.+++|+.|++.++..
T Consensus 224 -----------~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 224 -----------GLEHLKELIARNTWT 238 (239)
T ss_dssp -----------TCTTCSEEECTTC--
T ss_pred -----------HhccCceeeccCccC
Confidence 366667777666543
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=4.5e-17 Score=152.62 Aligned_cols=230 Identities=15% Similarity=0.123 Sum_probs=157.1
Q ss_pred cccccccccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccC
Q 044264 142 NGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYL 219 (439)
Q Consensus 142 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~ 219 (439)
+. .+.+|..+ .+++++|+|++|.++.+|. .+.++++|++|++++|...+.+|. .+.++++|+++....++.+..+
T Consensus 19 ~~-Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 19 SK-VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TT-CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CC-CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 45 56677655 3678999999999999986 578899999999999885566664 4678888876544443334554
Q ss_pred -CcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHH-HhCCCC-CCccEEEEeeccCC
Q 044264 220 -PAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVL-EALQPP-PNLKHLGIHQYRGN 296 (439)
Q Consensus 220 -~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~~~-~~L~~L~l~~~~~~ 296 (439)
|..+..+++|+.|++.+|.........+....++..|++..+... ..++ ..+..+ ..++.|++++|.+.
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i--------~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI--------HTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTC--------CEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccc--------ccccccchhhcchhhhhhcccccccc
Confidence 466788999999999888876555555556666777777553211 1111 122333 45778888888877
Q ss_pred ccCCchhhcccCccEEeecCCCCCCcCCC--CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceee
Q 044264 297 NVHPHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQ 374 (439)
Q Consensus 297 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 374 (439)
.+ +.......+|+.|++.++...+.+|. +..+++|+.|++++|. ++.+|.. .+.+|+.|.
T Consensus 168 ~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~----------------~~~~L~~L~ 229 (350)
T 4ay9_X 168 EI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY----------------GLENLKKLR 229 (350)
T ss_dssp EE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS----------------SCTTCCEEE
T ss_pred CC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh----------------hhccchHhh
Confidence 76 55555667788888887666666664 6788888888888876 5555532 356677777
Q ss_pred ccCCCCccccccCCCcccccCcccceeeecc
Q 044264 375 FWDMYVLKEWDYGDTIKGEIMPRLSSLCIAR 405 (439)
Q Consensus 375 l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~ 405 (439)
+.++.+++.++. ...+++|+.+++.+
T Consensus 230 ~l~~~~l~~lP~-----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 230 ARSTYNLKKLPT-----LEKLVALMEASLTY 255 (350)
T ss_dssp CTTCTTCCCCCC-----TTTCCSCCEEECSC
T ss_pred hccCCCcCcCCC-----chhCcChhhCcCCC
Confidence 777777766652 24577788777754
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=1e-18 Score=164.71 Aligned_cols=256 Identities=13% Similarity=0.019 Sum_probs=174.3
Q ss_pred EEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc----ccccccc-ccceeecCCCCCccC-ChhH
Q 044264 102 LLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP----KNIEKLV-HLRYLNLSRLKIEKL-PETL 175 (439)
Q Consensus 102 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~~~~l-p~~i 175 (439)
+.++.+. +.+.+|..+...++|++|++++ |.+....+ ..+..++ +|++|++++|.++.. +..+
T Consensus 3 ~~ls~n~-----~~~~~~~~~~~~~~L~~L~Ls~------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 71 (362)
T 3goz_A 3 YKLTLHP-----GSNPVEEFTSIPHGVTSLDLSL------NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL 71 (362)
T ss_dssp EECCCCT-----TCCHHHHHHTSCTTCCEEECTT------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH
T ss_pred ccccccc-----chHHHHHHHhCCCCceEEEccC------CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH
Confidence 4566665 6777888777777899999999 66333333 5677788 899999999998865 4556
Q ss_pred hhc-----cCCcEeecCCCCcccccchhhh----hc-cccceeeccCccccccCCcc----ccc-Ccccccccceeeccc
Q 044264 176 CEL-----YNLQLLNVESCQDLKELPQGFG----KL-INLMYLLNRGTESLRYLPAG----IER-LTSLRRVEKFVVGRG 240 (439)
Q Consensus 176 ~~l-----~~L~~L~l~~~~~~~~l~~~i~----~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~ 240 (439)
..+ ++|++|++++|......+..+. .+ ++|++|++++|......+.. +.. .++|++|++++|...
T Consensus 72 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 72 VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 665 9999999999994434444444 44 89999999999864433333 333 369999999998876
Q ss_pred cccc----ccccccc-CcceeeecccCCcchhccCChHHHHHhCCCC-CCccEEEEeeccCCcc----CCchhhc-ccCc
Q 044264 241 VARS----SELENKK-NLIDLLLYFGHGNEERKRKKDEEVLEALQPP-PNLKHLGIHQYRGNNV----HPHWMMS-LTDL 309 (439)
Q Consensus 241 ~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~----l~~~~~~-~~~L 309 (439)
+... ..+..++ +|++|++++|.... .....+...+..+ ++|++|++++|.+... ++..+.. .++|
T Consensus 152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 152 IKSSDELIQILAAIPANVNSLNLRGNNLAS----KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGG----SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhcCCccccEeeecCCCCch----hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 5333 3345555 89999999885322 1234455556666 4999999999987662 1344444 4599
Q ss_pred cEEeecCCCCCCcCC-----CCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 310 RILTLSHCINCEHLP-----PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 310 ~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
+.|++++|......+ .+..+++|+.|++++|. +..+....... ....+..++.|+.|+++++.
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~------l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKA------LGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHH------HHTTSTTCCEEEEECTTSCB
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHH------HHHHhccCCceEEEecCCCc
Confidence 999999997765332 25778899999999886 22222111000 00114567788888888764
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=2.5e-17 Score=154.35 Aligned_cols=235 Identities=17% Similarity=0.165 Sum_probs=148.3
Q ss_pred eEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc-ccccccccceeecCCCCC-ccCCh-hHh
Q 044264 100 RSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK-NIEKLVHLRYLNLSRLKI-EKLPE-TLC 176 (439)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~-~~lp~-~i~ 176 (439)
++++.+++. ...+|..+ .++++.|+|++ |. +..+|. .|.++++|++|+|++|.+ +.+|. .+.
T Consensus 12 ~~v~C~~~~------Lt~iP~~l--~~~l~~L~Ls~------N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESK------VTEIPSDL--PRNAIELRFVL------TK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp TEEEEESTT------CCSCCTTC--CTTCSEEEEES------CC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred CEEEecCCC------CCccCcCc--CCCCCEEEccC------Cc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 455666554 23445433 35788888888 76 555654 578888888888888885 45654 467
Q ss_pred hccCCcEeec-CCCCccccc-chhhhhccccceeeccCccccccCC-cccccCcccccccceeeccccc-ccccccccc-
Q 044264 177 ELYNLQLLNV-ESCQDLKEL-PQGFGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRVEKFVVGRGVA-RSSELENKK- 251 (439)
Q Consensus 177 ~l~~L~~L~l-~~~~~~~~l-~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~- 251 (439)
++++|..+.. .++. +..+ |..+..+++|++|++++|.. ..+| ..+....++..+++..+..... ....+..+.
T Consensus 77 ~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 77 NLPKLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154 (350)
T ss_dssp SCTTCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred cchhhhhhhcccCCc-ccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence 7777766444 4444 5555 45678888888888888874 3333 3344455566666655433322 233455554
Q ss_pred CcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEee-ccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcC
Q 044264 252 NLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQ-YRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLP 330 (439)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 330 (439)
.++.|++++|. ...++.......+|++|.+.+ +....+.+..+..+++|+.|++++|.+. .+|. ..+.
T Consensus 155 ~l~~L~L~~N~---------i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~-~~~~ 223 (350)
T 4ay9_X 155 ESVILWLNKNG---------IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS-YGLE 223 (350)
T ss_dssp SCEEEECCSSC---------CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS-SSCT
T ss_pred hhhhhcccccc---------ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh-hhhc
Confidence 57788888773 223334444556788888875 4444442234678888888888888654 3443 3356
Q ss_pred CcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccC
Q 044264 331 SLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWD 377 (439)
Q Consensus 331 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 377 (439)
+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 224 ~L~~L~~l~~~~l~~lP~---------------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLPT---------------LEKLVALMEASLTY 255 (350)
T ss_dssp TCCEEECTTCTTCCCCCC---------------TTTCCSCCEEECSC
T ss_pred cchHhhhccCCCcCcCCC---------------chhCcChhhCcCCC
Confidence 677777777776776664 55678888888764
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=150.42 Aligned_cols=198 Identities=15% Similarity=0.094 Sum_probs=90.0
Q ss_pred CCcEeecCCCCcccccchhh--hhccccceeeccCccccccCC----cccccCcccccccceeeccccccccccccccCc
Q 044264 180 NLQLLNVESCQDLKELPQGF--GKLINLMYLLNRGTESLRYLP----AGIERLTSLRRVEKFVVGRGVARSSELENKKNL 253 (439)
Q Consensus 180 ~L~~L~l~~~~~~~~l~~~i--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 253 (439)
+|++|++++|......|..+ ..+++|++|++++|......+ ..+..+++|++|++++|......+..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444222333333 444444444444444322221 112234444444444444444444444555555
Q ss_pred ceeeecccCCcchhccCChHHHH--HhCCCCCCccEEEEeeccCCccCCc----hhhcccCccEEeecCCCCCCcCCC-C
Q 044264 254 IDLLLYFGHGNEERKRKKDEEVL--EALQPPPNLKHLGIHQYRGNNVHPH----WMMSLTDLRILTLSHCINCEHLPP-L 326 (439)
Q Consensus 254 ~~L~l~~~~~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~~~~~~~-~ 326 (439)
+.|++++|.... ...++ ..+..+++|++|++++|.+... +. .+..+++|++|++++|.+....|. +
T Consensus 172 ~~L~Ls~N~l~~------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 172 TSLDLSDNPGLG------ERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CEEECCSCTTCH------HHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred CEEECCCCCCcc------chhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 555555542110 01111 1124455566666666555432 22 123556666666666655544332 3
Q ss_pred CCc---CCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeee
Q 044264 327 GKL---PSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCI 403 (439)
Q Consensus 327 ~~l---~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i 403 (439)
..+ ++|+.|++++|. ++.+|.. + +++|++|+++++ .++.++.. ..+|+|+.|++
T Consensus 245 ~~~~~~~~L~~L~Ls~N~-l~~lp~~--------------~--~~~L~~L~Ls~N-~l~~~~~~-----~~l~~L~~L~L 301 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAG-LEQVPKG--------------L--PAKLRVLDLSSN-RLNRAPQP-----DELPEVDNLTL 301 (310)
T ss_dssp SSCCCCTTCCCEECCSSC-CCSCCSC--------------C--CSCCSCEECCSC-CCCSCCCT-----TSCCCCSCEEC
T ss_pred HhccCcCcCCEEECCCCC-CCchhhh--------------h--cCCCCEEECCCC-cCCCCchh-----hhCCCccEEEC
Confidence 333 566666666665 3333321 1 256666666654 34444321 24566777777
Q ss_pred cccc
Q 044264 404 ARCP 407 (439)
Q Consensus 404 ~~c~ 407 (439)
++++
T Consensus 302 ~~N~ 305 (310)
T 4glp_A 302 DGNP 305 (310)
T ss_dssp SSTT
T ss_pred cCCC
Confidence 6663
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=5.5e-18 Score=159.66 Aligned_cols=236 Identities=14% Similarity=0.080 Sum_probs=163.5
Q ss_pred CcccCCCCCeeEEEecCCCCChhhHhhhhh----HhhhcCC-ceeEEeCCccccccccccccccccccccc-----cccc
Q 044264 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLP----QLFDELT-CLRALDFAMFQMWSWNGFIKEIPKNIEKL-----VHLR 159 (439)
Q Consensus 90 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-----~~L~ 159 (439)
|..+...++|+.|++++|. +....+ ..+..++ +|++|++++ |.+....+..+..+ ++|+
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~------N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNN-----LYSISTVELIQAFANTPASVTSLNLSG------NSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp HHHHTSCTTCCEEECTTSC-----GGGSCHHHHHHHHHTCCTTCCEEECCS------SCGGGSCHHHHHHHHHTSCTTCC
T ss_pred HHHHhCCCCceEEEccCCC-----CChHHHHHHHHHHHhCCCceeEEECcC------CCCCHHHHHHHHHHHhccCCCcc
Confidence 3334445569999999987 454444 6678888 899999999 66444444445554 8999
Q ss_pred eeecCCCCCccCCh-h----Hhhc-cCCcEeecCCCCcccccc-hhhh----h-ccccceeeccCcccccc----CCccc
Q 044264 160 YLNLSRLKIEKLPE-T----LCEL-YNLQLLNVESCQDLKELP-QGFG----K-LINLMYLLNRGTESLRY----LPAGI 223 (439)
Q Consensus 160 ~L~L~~~~~~~lp~-~----i~~l-~~L~~L~l~~~~~~~~l~-~~i~----~-l~~L~~L~l~~~~~~~~----~~~~~ 223 (439)
+|++++|.++..+. . +..+ ++|++|++++|. +...+ ..+. . .++|++|++++|..... ++..+
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999875543 3 4444 899999999998 44433 3333 3 35999999999876432 23334
Q ss_pred ccCc-ccccccceeecccccccccc----ccc-cCcceeeecccCCcchhccCChHHHHHhCCC-CCCccEEEEeeccCC
Q 044264 224 ERLT-SLRRVEKFVVGRGVARSSEL----ENK-KNLIDLLLYFGHGNEERKRKKDEEVLEALQP-PPNLKHLGIHQYRGN 296 (439)
Q Consensus 224 ~~l~-~L~~L~l~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~ 296 (439)
..++ +|++|++++|...+..+..+ ..+ ++|+.|++++|.... .....++..+.. .++|++|++++|.+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~----~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL----KSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG----SCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh----hHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 5555 89999999988766555444 444 599999999885221 123446666655 469999999999887
Q ss_pred ccCC----chhhcccCccEEeecCCCCCCc-------C-CCCCCcCCcCeeeecccc
Q 044264 297 NVHP----HWMMSLTDLRILTLSHCINCEH-------L-PPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 297 ~~l~----~~~~~~~~L~~L~l~~~~~~~~-------~-~~~~~l~~L~~L~l~~~~ 341 (439)
...+ ..+..+++|+.|++++|..... + ..+..+++|+.|++++|.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 6422 2235778999999999873221 1 236678899999999987
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=1.3e-16 Score=142.34 Aligned_cols=175 Identities=18% Similarity=0.141 Sum_probs=105.5
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLIN 204 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~ 204 (439)
...+.+++++ +. ...+|..+. +++++|++++|.++.++. .+.++++|++|++++|......+..+..+++
T Consensus 14 ~~~~~l~~~~------~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 14 EGKKEVDCQG------KS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84 (251)
T ss_dssp GGGTEEECTT------CC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCeEEecCC------CC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc
Confidence 3466677776 55 555665443 567777777777766554 5677777777777777633333344667777
Q ss_pred cceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCC
Q 044264 205 LMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPN 284 (439)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 284 (439)
|++|++++|......+..+..+++|++|++++|......+. .+..+++
T Consensus 85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------------~~~~l~~ 132 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG--------------------------------VFDRLTK 132 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------------------------TTTTCTT
T ss_pred CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChh--------------------------------HhccCCc
Confidence 77777777764332333445556666665555544322222 2344556
Q ss_pred ccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 285 LKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 285 L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|+
T Consensus 133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 66666666666555333566677777777777766544442 6667777777777766
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=2e-16 Score=141.00 Aligned_cols=172 Identities=20% Similarity=0.229 Sum_probs=124.4
Q ss_pred ceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccc
Q 044264 75 NVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEK 154 (439)
Q Consensus 75 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 154 (439)
..+.+.+.+.....+|..+. +.++.|++.+|. +....+..+..+++|++|++++ +.+....+..+..
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~ 81 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-----LATLSDATFRGLTKLTWLNLDY------NQLQTLSAGVFDD 81 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-----CCCCCTTTTTTCTTCCEEECTT------SCCCCCCTTTTTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCC-----cCccCHhHhcCcccCCEEECCC------CcCCccCHhHhcc
Confidence 34566777777777877654 578888888887 5666666788888888888888 6644445556788
Q ss_pred ccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCc-ccccCccccc
Q 044264 155 LVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPA-GIERLTSLRR 231 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~ 231 (439)
+++|++|++++|.++.+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|. .+..+++|+.
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQT 159 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCE
Confidence 8888888888888887764 46788888888888887 556655 357788888888888874 34443 5777778888
Q ss_pred ccceeeccccccccccccccCcceeeeccc
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
|++.+|......+..+..+++|+.|++++|
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 887777666554555666666666666655
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=1e-16 Score=146.06 Aligned_cols=169 Identities=22% Similarity=0.229 Sum_probs=94.0
Q ss_pred hcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhc
Q 044264 123 DELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKL 202 (439)
Q Consensus 123 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l 202 (439)
..+++|+.|++++ +. +..++ .+..+++|++|++++|.++.+++ +.++++|++|++++|. +..+|. +..+
T Consensus 43 ~~l~~L~~L~l~~------~~-i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l 111 (291)
T 1h6t_A 43 NELNSIDQIIANN------SD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDL 111 (291)
T ss_dssp HHHHTCCEEECTT------SC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTC
T ss_pred hhcCcccEEEccC------CC-cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccC
Confidence 3455566666665 44 33333 25556666666666666665554 5666666666666665 444443 5566
Q ss_pred cccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCC
Q 044264 203 INLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPP 282 (439)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 282 (439)
++|++|++++|.. ..+ ..+..+++|+.|++++|..... ..+..+
T Consensus 112 ~~L~~L~L~~n~i-~~~-~~l~~l~~L~~L~l~~n~l~~~----------------------------------~~l~~l 155 (291)
T 1h6t_A 112 KKLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKITDI----------------------------------TVLSRL 155 (291)
T ss_dssp TTCCEEECTTSCC-CCC-GGGGGCTTCCEEECCSSCCCCC----------------------------------GGGGGC
T ss_pred CCCCEEECCCCcC-CCC-hhhcCCCCCCEEEccCCcCCcc----------------------------------hhhccC
Confidence 6666666666542 222 2344444444444444433221 234455
Q ss_pred CCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 283 PNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 283 ~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
++|++|++++|.+... +. +..+++|+.|++++|.+. .++.+..+++|+.|++++|+
T Consensus 156 ~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~-~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 156 TKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEEEE
T ss_pred CCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCC-CChhhccCCCCCEEECcCCc
Confidence 6666666666666554 22 666677777777776543 34456666777777777665
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=2.3e-16 Score=143.70 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=116.8
Q ss_pred cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC
Q 044264 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP 172 (439)
Q Consensus 93 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 172 (439)
...+++|+.|+++++. +. .++. +..+++|++|++++ |. +..++. +..+++|++|++++|.++.+|
T Consensus 42 ~~~l~~L~~L~l~~~~-----i~-~~~~-~~~l~~L~~L~L~~------n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-----IK-SVQG-IQYLPNVTKLFLNG------NK-LTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp HHHHHTCCEEECTTSC-----CC-CCTT-GGGCTTCCEEECCS------SC-CCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred hhhcCcccEEEccCCC-----cc-cChh-HhcCCCCCEEEccC------Cc-cCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 3467899999999987 33 3333 78899999999999 77 445555 899999999999999999877
Q ss_pred hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccC
Q 044264 173 ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 173 ~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
. +..+++|++|++++|. +..++ .+..+++|++|++++|.. ..+ ..+..+++|+.|++++|...+..+ +..+++
T Consensus 107 ~-l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp G-GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred h-hccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCCEEEccCCccccchh--hcCCCc
Confidence 5 8999999999999998 66664 588999999999999984 444 567888888888888876654332 666666
Q ss_pred cceeeeccc
Q 044264 253 LIDLLLYFG 261 (439)
Q Consensus 253 L~~L~l~~~ 261 (439)
|+.|++++|
T Consensus 180 L~~L~L~~N 188 (291)
T 1h6t_A 180 LQNLYLSKN 188 (291)
T ss_dssp CCEEECCSS
T ss_pred cCEEECCCC
Confidence 666666665
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=4.3e-16 Score=155.43 Aligned_cols=170 Identities=19% Similarity=0.215 Sum_probs=105.9
Q ss_pred cccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
+..+++|+.|++++|.+..+| .+..+++|+.|++++|. +..++. +..+++|+.|++++|.. ..+| .+..+++|+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCE
Confidence 345566666666666665554 35566666666666665 444444 55666666666666553 3333 4556666666
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccE
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 311 (439)
|+++.|.... ...+..+++|+.|++++|.... + ..+..+++|+.|+|++|.+... +. +..+++|+.
T Consensus 114 L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~---------l-~~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~ 179 (605)
T 1m9s_A 114 LSLEHNGISD--INGLVHLPQLESLYLGNNKITD---------I-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQN 179 (605)
T ss_dssp EECTTSCCCC--CGGGGGCTTCSEEECCSSCCCC---------C-GGGGSCTTCSEEECCSSCCCCC-GG-GTTCTTCCE
T ss_pred EEecCCCCCC--CccccCCCccCEEECCCCccCC---------c-hhhcccCCCCEEECcCCcCCCc-hh-hccCCCCCE
Confidence 6666555443 2346666677777776663221 1 3466677788888887777764 22 777888888
Q ss_pred EeecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 312 LTLSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 312 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
|+|++|.+.. ++.+..+++|+.|++++|.
T Consensus 180 L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 180 LYLSKNHISD-LRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred EECcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence 8888876543 4567778888888888776
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=5.1e-16 Score=154.94 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=68.4
Q ss_pred cccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
+..+++|+.|+|++|.+..+++ +..+++|+.|++++|. +..+| .+..+++|+.|++++|.. ..+ ..+..+++|+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~~ 135 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNGI-SDI-NGLVHLPQLES 135 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTSCC-CCC-GGGGGCTTCSE
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCCCC-CCC-ccccCCCccCE
Confidence 4444444444444444444443 4444444444444444 33333 244444444444444442 222 22444444444
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccE
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 311 (439)
|+++.|..... ..+..+++|+.|++++|.... ++. +..+++|+.|+|++|.+... ..+..+++|+.
T Consensus 136 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~---------~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~ 201 (605)
T 1m9s_A 136 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD---------IVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDV 201 (605)
T ss_dssp EECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC---------CGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSE
T ss_pred EECCCCccCCc--hhhcccCCCCEEECcCCcCCC---------chh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCE
Confidence 44444443322 334455555555555542111 111 44555555555555555542 33555566666
Q ss_pred EeecCCCCC
Q 044264 312 LTLSHCINC 320 (439)
Q Consensus 312 L~l~~~~~~ 320 (439)
|+|++|.+.
T Consensus 202 L~L~~N~l~ 210 (605)
T 1m9s_A 202 LELFSQECL 210 (605)
T ss_dssp EECCSEEEE
T ss_pred EEccCCcCc
Confidence 666655443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=2.7e-16 Score=134.73 Aligned_cols=151 Identities=17% Similarity=0.241 Sum_probs=82.9
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRV 232 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (439)
..+++|++|++++|.++.+| .+..+++|++|++++|. ...++ .+..+++|++|++++|......|..++.+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 44555666666666555555 45555666666665553 33332 35555555555555554333333444444444444
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeecc-CCccCCchhhcccCccE
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYR-GNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~l~~~~~~~~~L~~ 311 (439)
+++.|...+. .+..+..+++|++|++++|. .... + .+..+++|+.
T Consensus 118 ~Ls~n~i~~~--------------------------------~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~ 163 (197)
T 4ezg_A 118 DISHSAHDDS--------------------------------ILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKS 163 (197)
T ss_dssp ECCSSBCBGG--------------------------------GHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCE
T ss_pred EecCCccCcH--------------------------------hHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCE
Confidence 4444433322 23444556666666666665 4442 3 5667777777
Q ss_pred EeecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 312 LTLSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 312 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
|++++|.... ++.+..+++|+.|++++|.
T Consensus 164 L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 164 LNIQFDGVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred EECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence 7777776543 4456667777777777766
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=2.6e-15 Score=134.56 Aligned_cols=167 Identities=17% Similarity=0.164 Sum_probs=107.0
Q ss_pred cCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcc
Q 044264 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203 (439)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~ 203 (439)
.+..+..+++++ +. +..++ .+..+++|++|++++|.++.+| .+..+++|++|++++|. +..++. +..++
T Consensus 17 ~l~~l~~l~l~~------~~-i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLGK------QS-VTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHHTC------SC-TTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCS
T ss_pred HHHHHHHHHhcC------CC-ccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCC
Confidence 344555666665 44 33444 3566677777777777766666 56666777777777666 555555 66667
Q ss_pred ccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCC
Q 044264 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP 283 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (439)
+|++|++++|.. ..+|.. . . ++|+.|++++|.... + ..+..++
T Consensus 86 ~L~~L~L~~N~l-~~l~~~-~------------------------~-~~L~~L~L~~N~l~~---------~-~~l~~l~ 128 (263)
T 1xeu_A 86 KLEELSVNRNRL-KNLNGI-P------------------------S-ACLSRLFLDNNELRD---------T-DSLIHLK 128 (263)
T ss_dssp SCCEEECCSSCC-SCCTTC-C------------------------C-SSCCEEECCSSCCSB---------S-GGGTTCT
T ss_pred CCCEEECCCCcc-CCcCcc-c------------------------c-CcccEEEccCCccCC---------C-hhhcCcc
Confidence 777777766653 333221 1 1 455555555553211 1 2356677
Q ss_pred CccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 284 NLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 284 ~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
+|+.|++++|.+... + .+..+++|+.|++++|.+... +.+..+++|+.|++++|.
T Consensus 129 ~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 129 NLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 788888887777764 3 677888889999988877654 667888889999998887
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=7.7e-15 Score=125.56 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=83.4
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..+++.+.+.++....+| .+..+++|+.|++.+|. + ..++ .+..+++|++|++++ |.+....+..+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-----~-~~~~-~l~~l~~L~~L~l~~------n~l~~~~~~~l 108 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-----A-TNYN-PISGLSNLERLRIMG------KDVTSDKIPNL 108 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-----C-SCCG-GGTTCTTCCEEEEEC------TTCBGGGSCCC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-----C-Ccch-hhhcCCCCCEEEeEC------CccCcccChhh
Confidence 345666666666666555 45566666666666664 1 1122 355666666666666 55333345556
Q ss_pred ccccccceeecCCCCCcc-CChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 153 EKLVHLRYLNLSRLKIEK-LPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
..+++|++|++++|.++. .|..++.+++|++|++++|..+..+| .+..+++|++|++++|.. ..++ .+..+++|+.
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQ 185 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCE
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCE
Confidence 666666666666666553 45556666666666666665444454 356666666666666553 2333 3445555555
Q ss_pred ccceeec
Q 044264 232 VEKFVVG 238 (439)
Q Consensus 232 L~l~~~~ 238 (439)
|++.+|.
T Consensus 186 L~l~~N~ 192 (197)
T 4ezg_A 186 LYAFSQT 192 (197)
T ss_dssp EEECBC-
T ss_pred EEeeCcc
Confidence 5554443
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=1.6e-15 Score=149.81 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=21.5
Q ss_pred cEEEEeeccCCccCCchhhcccCccEEeecCCCCCCc
Q 044264 286 KHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEH 322 (439)
Q Consensus 286 ~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 322 (439)
+.|++++|.+..+ |..+..+++|+.|++++|.+...
T Consensus 210 ~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 210 IFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp EEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHH
T ss_pred eEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCc
Confidence 6666666665554 55555566666666666655443
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=2.9e-15 Score=147.87 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=121.9
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcccc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINL 205 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L 205 (439)
.+|+.|++++ +. +..+|..+ .++|++|++++|.++.+| ..+++|++|++++|. +..+|. +.. +|
T Consensus 59 ~~L~~L~Ls~------n~-L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 59 NQFSELQLNR------LN-LSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TTCSEEECCS------SC-CSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CCccEEEeCC------CC-CCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 3788888888 66 44466654 367888888888888887 457888888888887 556776 554 88
Q ss_pred ceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCc
Q 044264 206 MYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNL 285 (439)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 285 (439)
++|++++|.. ..+|. .+++|+.|++++|.... ++. .+++|+.|++++|... .++. +. ++|
T Consensus 123 ~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~---------~lp~-l~--~~L 182 (571)
T 3cvr_A 123 KHLDVDNNQL-TMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT---------FLPE-LP--ESL 182 (571)
T ss_dssp CEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS---------CCCC-CC--TTC
T ss_pred CEEECCCCcC-CCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC---------Ccch-hh--CCC
Confidence 8888888874 44665 57788888887776654 333 4567777877777321 1222 33 678
Q ss_pred cEEEEeeccCCccCCchhhcccCc-------cEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEe
Q 044264 286 KHLGIHQYRGNNVHPHWMMSLTDL-------RILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRV 346 (439)
Q Consensus 286 ~~L~l~~~~~~~~l~~~~~~~~~L-------~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~ 346 (439)
+.|++++|.+..+ |. +.. +| +.|++++|.+.. +|. +..+++|+.|++++|+....+
T Consensus 183 ~~L~Ls~N~L~~l-p~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 183 EALDVSTNLLESL-PA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CEEECCSSCCSSC-CC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred CEEECcCCCCCch-hh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 8888888877765 55 433 56 888888876653 554 666788888888888744433
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=5e-15 Score=127.93 Aligned_cols=122 Identities=28% Similarity=0.324 Sum_probs=64.8
Q ss_pred EEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccccc
Q 044264 79 SMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158 (439)
Q Consensus 79 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L 158 (439)
+.........+|..+ .++++.|+++++. +....+..+..+++|++|++++ +.+....+..+..+++|
T Consensus 12 v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI--PAQTTYLDLETNS-----LKSLPNGVFDELTSLTQLYLGG------NKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp EECCSSCCSSCCSCC--CTTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCS------SCCCCCCTTTTTTCTTC
T ss_pred EEecCCCccCCCCCC--CCCCcEEEcCCCc-----cCcCChhhhcccccCcEEECCC------CccCccChhhcCCCCCc
Confidence 334444445555443 2456666666665 3344444455666666666666 54222222334556666
Q ss_pred ceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch-hhhhccccceeeccCcc
Q 044264 159 RYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTE 214 (439)
Q Consensus 159 ~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~ 214 (439)
++|++++|.++.+|.. +..+++|++|++++|. +..++. .+..+++|++|++++|.
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc
Confidence 6666666666555543 4556666666666665 333333 24555556666555554
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.6e-16 Score=157.51 Aligned_cols=198 Identities=19% Similarity=0.042 Sum_probs=128.3
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCC-------------cccccchhhhhccccceee-ccCcccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQ-------------DLKELPQGFGKLINLMYLL-NRGTESLRY 218 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~-------------~~~~l~~~i~~l~~L~~L~-l~~~~~~~~ 218 (439)
..+++|+.|+|++|.++.+|..++++++|+.|+++++. .....|..++.+++|+.|+ ++.+. ...
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence 45667777777777777777777777777777775543 2334455667777777776 33332 111
Q ss_pred CCc------cccc--CcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEE
Q 044264 219 LPA------GIER--LTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGI 290 (439)
Q Consensus 219 ~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 290 (439)
++. .+.. ...|+.|++++|.... ++. ++.+++|+.|++++|. ...+|..++.+++|+.|++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~---------l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR---------LRALPPALAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC---------CCCCCGGGGGCTTCCEEEC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccc---------ccccchhhhcCCCCCEEEC
Confidence 111 0111 1246777777776654 443 7778888888888773 2344566777888888888
Q ss_pred eeccCCccCCchhhcccCccEEeecCCCCCCcC-CC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCC
Q 044264 291 HQYRGNNVHPHWMMSLTDLRILTLSHCINCEHL-PP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFP 368 (439)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 368 (439)
++|.+..+ | .+..+++|+.|++++|.+.... |. ++.+++|+.|++++|. +..++...... ...+|
T Consensus 494 s~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l----------~~~lp 560 (567)
T 1dce_A 494 SDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERL----------AEMLP 560 (567)
T ss_dssp CSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHH----------HHHCT
T ss_pred CCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHH----------HHHCc
Confidence 88888774 6 7778888888888888776653 43 7788888888888887 44343321110 23478
Q ss_pred Ccceeec
Q 044264 369 KLKTIQF 375 (439)
Q Consensus 369 ~L~~L~l 375 (439)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 8888764
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=1.7e-15 Score=135.78 Aligned_cols=170 Identities=18% Similarity=0.128 Sum_probs=126.4
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChh
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET 174 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~ 174 (439)
.+..+..+.+.++. +.. ++ .+..+++|++|++++ +. +..++ .+..+++|++|++++|.++.+++
T Consensus 17 ~l~~l~~l~l~~~~-----i~~-~~-~~~~l~~L~~L~l~~------n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-----VTD-LV-SQKELSGVQNFNGDN------SN-IQSLA-GMQFFTNLKELHLSHNQISDLSP- 80 (263)
T ss_dssp HHHHHHHHHHTCSC-----TTS-EE-CHHHHTTCSEEECTT------SC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-
T ss_pred HHHHHHHHHhcCCC-----ccc-cc-chhhcCcCcEEECcC------CC-cccch-HHhhCCCCCEEECCCCccCCChh-
Confidence 34556677777776 333 33 377899999999999 76 55666 68899999999999999999988
Q ss_pred HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcc
Q 044264 175 LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLI 254 (439)
Q Consensus 175 i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 254 (439)
+..+++|++|++++|. +..+|.. .. ++|++|++++|.. ..++ .+..+++|+.|++++|...+. ..+..+++|+
T Consensus 81 l~~l~~L~~L~L~~N~-l~~l~~~-~~-~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~ 153 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNR-LKNLNGI-PS-ACLSRLFLDNNEL-RDTD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLE 153 (263)
T ss_dssp GTTCSSCCEEECCSSC-CSCCTTC-CC-SSCCEEECCSSCC-SBSG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCC
T ss_pred hccCCCCCEEECCCCc-cCCcCcc-cc-CcccEEEccCCcc-CCCh-hhcCcccccEEECCCCcCCCC--hHHccCCCCC
Confidence 9999999999999998 7777763 33 9999999999974 4443 577888888888887776543 2566777777
Q ss_pred eeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCc
Q 044264 255 DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN 297 (439)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 297 (439)
.|++++|.... + ..+..+++|+.|++++|....
T Consensus 154 ~L~L~~N~i~~---------~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 154 VLDLHGNEITN---------T-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EEECTTSCCCB---------C-TTSTTCCCCCEEEEEEEEEEC
T ss_pred EEECCCCcCcc---------h-HHhccCCCCCEEeCCCCcccC
Confidence 77777764222 1 445566666666666665544
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=3.1e-14 Score=122.93 Aligned_cols=162 Identities=19% Similarity=0.259 Sum_probs=133.8
Q ss_pred cCCceeEEEEEcCCCCCcCcc-cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGAPFPIS-FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
...+++.+.+.++....++.. +..+++|++|++.+|. +....+..|..+++|++|++++ |.+....+.
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~ 94 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-----LQSLPNGVFNKLTSLTYLNLST------NQLQSLPNG 94 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCS------SCCCCCCTT
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-----cCccChhhcCCCCCcCEEECCC------CcCCccCHh
Confidence 456899999999988877654 6789999999999987 5555666688999999999999 774433344
Q ss_pred ccccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCcc
Q 044264 151 NIEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTS 228 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 228 (439)
.+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++. .+..+++|++|++++|... +.+++
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~ 166 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPG 166 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTT
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cCCCC
Confidence 578999999999999999988765 7899999999999998 556655 4789999999999998643 45678
Q ss_pred cccccceeeccccccccccccccC
Q 044264 229 LRRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 229 L~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
|+.|.++.+...+.++..++.++.
T Consensus 167 l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp THHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHHHHHhCCceeeccCccccC
Confidence 999999999888888888777654
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=1.5e-16 Score=157.87 Aligned_cols=121 Identities=19% Similarity=0.107 Sum_probs=79.4
Q ss_pred ccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCC
Q 044264 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP 283 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (439)
.|+.|++++|. +..+|. ++.+++|+.|++++|... .+|..++.+++|+.|++++|.. ..++ .+..++
T Consensus 442 ~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l---------~~lp-~l~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL---------ENVD-GVANLP 508 (567)
T ss_dssp TCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC---------CCCG-GGTTCS
T ss_pred CceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC---------CCCc-ccCCCC
Confidence 45666666665 334554 666666666666666554 4555666666666666666631 1233 567778
Q ss_pred CccEEEEeeccCCccC-CchhhcccCccEEeecCCCCCCcCCCC----CCcCCcCeeee
Q 044264 284 NLKHLGIHQYRGNNVH-PHWMMSLTDLRILTLSHCINCEHLPPL----GKLPSLEQLYF 337 (439)
Q Consensus 284 ~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~l~~L~~L~l 337 (439)
+|+.|++++|.+.... |..+..+++|+.|++++|.+....+.. ..+|+|+.|++
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8888888888877764 677888889999999988776555433 23678888753
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=2.1e-14 Score=125.85 Aligned_cols=148 Identities=25% Similarity=0.368 Sum_probs=107.3
Q ss_pred eeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc-ccccc
Q 044264 76 VRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP-KNIEK 154 (439)
Q Consensus 76 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~ 154 (439)
.+.+.........+|..+. ++|+.|++++|. +....+..|..+++|++|++++ |. +..+| ..+..
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~L~~------N~-l~~i~~~~~~~ 86 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQ-----ITKLEPGVFDSLINLKELYLGS------NQ-LGALPVGVFDS 86 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCS------SC-CCCCCTTTTTT
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCc-----cCccCHHHhhCccCCcEEECCC------CC-CCCcChhhccc
Confidence 3445566666677776554 788888888887 5666677788888888888888 66 34444 44677
Q ss_pred ccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCC-cccccCcccccc
Q 044264 155 LVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRV 232 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 232 (439)
+++|++|+|++|.++.+|.. +..+++|++|++++|. +..+|..+..+++|++|++++|.. ..+| ..+..+++|+.|
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEE
Confidence 88888888888888877654 5778888888888887 667888788888888888888764 3443 346666777777
Q ss_pred cceeecc
Q 044264 233 EKFVVGR 239 (439)
Q Consensus 233 ~l~~~~~ 239 (439)
++.+|..
T Consensus 165 ~l~~N~~ 171 (229)
T 3e6j_A 165 YLFGNPW 171 (229)
T ss_dssp ECTTSCB
T ss_pred EeeCCCc
Confidence 6666544
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=1.9e-14 Score=125.30 Aligned_cols=148 Identities=19% Similarity=0.196 Sum_probs=95.0
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVH 157 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 157 (439)
.+...+.....+|..+. +.++.|++.+|. +....+..|..+++|++|++++ |.+....|..+..+++
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-----i~~i~~~~~~~l~~L~~L~Ls~------N~i~~~~~~~~~~l~~ 81 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT-----IKVIPPGAFSPYKKLRRIDLSN------NQISELAPDAFQGLRS 81 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSC-----CCEECTTSSTTCTTCCEEECCS------SCCCEECTTTTTTCSS
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCc-----CCCcCHhHhhCCCCCCEEECCC------CcCCCcCHHHhhCCcC
Confidence 34444555566666543 567777777776 4555555677777777777777 6644444666777777
Q ss_pred cceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccccee
Q 044264 158 LRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFV 236 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (439)
|++|+|++|.++.+|.. +..+++|++|++++|......|..+..+++|++|++++|......+..+..+++|+.|++.+
T Consensus 82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 77777777777777654 46677777777777773333345667777777777777764333333455566666666555
Q ss_pred ec
Q 044264 237 VG 238 (439)
Q Consensus 237 ~~ 238 (439)
|.
T Consensus 162 N~ 163 (220)
T 2v9t_B 162 NP 163 (220)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=3.6e-15 Score=152.44 Aligned_cols=168 Identities=21% Similarity=0.151 Sum_probs=103.0
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
...++++.+........+..+.....|+.+.+.......+. ....+..+..++.|+.|+|++ +. +..+|..+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~-~~~~~~~~~~l~~L~~L~Ls~------n~-l~~l~~~~ 243 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENR-MVMPKDSKYDDQLWHALDLSN------LQ-IFNISANI 243 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTT------SC-CSCCCGGG
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccc-eecChhhhccCCCCcEEECCC------CC-CCCCChhh
Confidence 35577788877777666655544455555444332210011 124567788899999999998 77 55788778
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRV 232 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (439)
..+++|++|+|++|.++.+|..++++++|++|+|++|. +..+|..++.|++|++|++++|. +..+|..++.+++|+.|
T Consensus 244 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCE
T ss_pred cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEE
Confidence 89999999999999999999999999999999999998 66889999999999999999987 46888889999999999
Q ss_pred cceeeccccccccccccc
Q 044264 233 EKFVVGRGVARSSELENK 250 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l 250 (439)
++++|...+..+..+..+
T Consensus 322 ~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 322 GVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp ECTTSCCCSHHHHHHHHH
T ss_pred eCCCCccCCCChHHHhhc
Confidence 999988877666555443
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=8.2e-14 Score=121.28 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=78.8
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhh-HhhhcCCceeEEeCCcccccccccccccccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLP-QLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 156 (439)
.+.+.+.....+|..+. +.++.|++++|. +....+ ..|..+++|++|++++ |.+....+..+..++
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-----l~~~~~~~~~~~l~~L~~L~L~~------N~i~~i~~~~~~~l~ 81 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNE-----FTVLEATGIFKKLPQLRKINFSN------NKITDIEEGAFEGAS 81 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSC-----CCEECCCCCGGGCTTCCEEECCS------SCCCEECTTTTTTCT
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCc-----CCccCchhhhccCCCCCEEECCC------CcCCEECHHHhCCCC
Confidence 44455555555555442 344566666665 333322 3355666666666666 553322333556666
Q ss_pred ccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccce
Q 044264 157 HLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKF 235 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 235 (439)
+|++|++++|.++.++. .+..+++|++|++++|......|..+..+++|++|++++|......|..+..+++|+.|++.
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 66666666666665544 35566666666666665222234455566666666666655433334445555555555554
Q ss_pred eec
Q 044264 236 VVG 238 (439)
Q Consensus 236 ~~~ 238 (439)
+|.
T Consensus 162 ~N~ 164 (220)
T 2v70_A 162 ANP 164 (220)
T ss_dssp SCC
T ss_pred CcC
Confidence 443
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=5.1e-14 Score=123.39 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=24.7
Q ss_pred CccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 284 NLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 284 ~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
+|++|++++|.+..+ |..+..+++|+.|++++|.+....+. +..+++|+.|++++|+
T Consensus 113 ~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 113 HLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 333333333333332 44444445555555555444322222 4444555555555544
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=5.3e-14 Score=132.25 Aligned_cols=172 Identities=17% Similarity=0.134 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhh-cCCceeEEeCCccccccccccccccccccccc
Q 044264 77 RHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFD-ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155 (439)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 155 (439)
+.+.+.+.....+|..+. +.++.|++++|. +....+..+. .+++|+.|++++ |.+....+..+..+
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-----l~~l~~~~~~~~l~~L~~L~L~~------N~i~~i~~~~~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN-----LSRLRAEWTPTRLTNLHSLLLSH------NHLNFISSEAFVPV 87 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC-----CCEECTTSSSSCCTTCCEEECCS------SCCCEECTTTTTTC
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC-----CCccChhhhhhcccccCEEECCC------CcCCccChhhccCC
Confidence 355666666777777654 468889999987 5555566666 889999999998 77444444568889
Q ss_pred cccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCccc----ccCcccc
Q 044264 156 VHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGI----ERLTSLR 230 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~ 230 (439)
++|++|+|++|.++.++. .+..+++|++|++++|......|..+..+++|++|++++|.. ..+|..+ ..+++|+
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCC
Confidence 999999999999887765 578889999999999884333466788899999999998874 5566543 5688899
Q ss_pred cccceeeccccccccccccccC--cceeeecccC
Q 044264 231 RVEKFVVGRGVARSSELENKKN--LIDLLLYFGH 262 (439)
Q Consensus 231 ~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~ 262 (439)
.|++++|.........+..++. |+.|++.+|.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 9998888777655566777776 4778888774
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.2e-13 Score=120.28 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=82.8
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccC-ChhHhhccCCcEeecCCCCcccccchh-hhhcc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQG-FGKLI 203 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~ 203 (439)
+.|+.|++++ +.+....+..+..+++|++|+|++|.++.+ |..+.++++|++|++++|. +..+|.. +..++
T Consensus 32 ~~l~~L~l~~------n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQ------NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCS------SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred cCCCEEECCC------CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCC
Confidence 5677777777 663333334566777777777777777655 5567777777777777776 5555543 46677
Q ss_pred ccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeeccc
Q 044264 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
+|++|++++|......|..+..+++|+.|++++|......+..+..+++|+.|++++|
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 7777777777654444555666677777777666655544444555555555555555
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=120.02 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=90.9
Q ss_pred eEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc-cccccccccceeecCCCCCccCCh-hHhh
Q 044264 100 RSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEKLPE-TLCE 177 (439)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~lp~-~i~~ 177 (439)
+.++++++. + ..+|..+ .+.++.|++++ +.+....+ ..+..+++|++|++++|.++.+++ .+..
T Consensus 14 ~~l~~s~n~-----l-~~iP~~~--~~~~~~L~L~~------N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 79 (220)
T 2v70_A 14 TTVDCSNQK-----L-NKIPEHI--PQYTAELRLNN------NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG 79 (220)
T ss_dssp TEEECCSSC-----C-SSCCSCC--CTTCSEEECCS------SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEeEeCCCC-----c-ccCccCC--CCCCCEEEcCC------CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC
Confidence 466666665 2 2234322 23466777777 65332222 336677777777777777776654 5777
Q ss_pred ccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCccee
Q 044264 178 LYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDL 256 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 256 (439)
+++|++|++++|. +..++ ..+..+++|++|++++|......|..+..+++|+.|++.+|......+..+..+++|+.|
T Consensus 80 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 80 ASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp CTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 7777777777777 44443 346777777777777776544445566667777777776666655555555566666666
Q ss_pred eeccc
Q 044264 257 LLYFG 261 (439)
Q Consensus 257 ~l~~~ 261 (439)
++++|
T Consensus 159 ~L~~N 163 (220)
T 2v70_A 159 NLLAN 163 (220)
T ss_dssp ECCSC
T ss_pred EecCc
Confidence 66555
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=4.2e-14 Score=132.96 Aligned_cols=126 Identities=19% Similarity=0.183 Sum_probs=71.9
Q ss_pred eEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccc-cccccceeecCCCCCccCCh-hHhh
Q 044264 100 RSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIE-KLVHLRYLNLSRLKIEKLPE-TLCE 177 (439)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~lp~-~i~~ 177 (439)
+.+++.++. ...+|..+ .+.++.|++++ |.+....+..+. .+++|++|+|++|.++.+++ .+.+
T Consensus 21 ~~l~c~~~~------l~~iP~~~--~~~l~~L~Ls~------N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQ------LPNVPQSL--PSYTALLDLSH------NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp TEEECCSSC------CSSCCSSC--CTTCSEEECCS------SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEeCCCC------cCccCccC--CCCCCEEECCC------CCCCccChhhhhhcccccCEEECCCCcCCccChhhccC
Confidence 456666654 22333322 23466677776 553332333344 66677777777777666653 4666
Q ss_pred ccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCcccccccceeeccc
Q 044264 178 LYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRG 240 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 240 (439)
+++|++|++++|. +..++. .+..+++|++|++++|......|..+..+++|+.|++++|...
T Consensus 87 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 87 VPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 6777777777766 444433 4566667777777666644333455566666666666655544
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1.3e-13 Score=114.60 Aligned_cols=110 Identities=26% Similarity=0.253 Sum_probs=49.1
Q ss_pred hhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCcc-CChhHhhccCCcEeecCCCCcccccc
Q 044264 118 LPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEK-LPETLCELYNLQLLNVESCQDLKELP 196 (439)
Q Consensus 118 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~~l~ 196 (439)
+|..+..+++|++|++++ |. +..+ ..+..+++|++|++++|.++. +|..+.++++|++|++++|. +..+|
T Consensus 41 i~~~~~~l~~L~~L~l~~------n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~ 111 (168)
T 2ell_A 41 IEGLTAEFVNLEFLSLIN------VG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDIS 111 (168)
T ss_dssp CSSCCGGGGGCCEEEEES------SC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSG
T ss_pred HHHHHHhCCCCCEEeCcC------CC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcch
Confidence 333344445555555544 33 2222 334445555555555555443 44444445555555555554 33333
Q ss_pred --hhhhhccccceeeccCccccccCCc----ccccCcccccccceee
Q 044264 197 --QGFGKLINLMYLLNRGTESLRYLPA----GIERLTSLRRVEKFVV 237 (439)
Q Consensus 197 --~~i~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~ 237 (439)
..+..+++|++|++++|.. ...|. .+..+++|+.|++..|
T Consensus 112 ~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 112 TLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp GGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEET
T ss_pred hHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCC
Confidence 3444455555555554442 22222 3444444444444443
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1e-13 Score=112.87 Aligned_cols=123 Identities=27% Similarity=0.284 Sum_probs=61.2
Q ss_pred CCeeEEEecCCCCChhhHh-hhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCcc-CChh
Q 044264 97 KRLRSLLIDDNGDDEFWLT-EVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEK-LPET 174 (439)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~ 174 (439)
++++.|++++|. +. +.+|..+..+++|++|++++ |. +..+ ..+..+++|++|++++|.++. +|..
T Consensus 17 ~~l~~L~l~~n~-----l~~~~~~~~~~~l~~L~~L~l~~------n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 17 SDVKELVLDNSR-----SNEGKLEGLTDEFEELEFLSTIN------VG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp GGCSEEECTTCB-----CBTTBCCSCCTTCTTCCEEECTT------SC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred ccCeEEEccCCc-----CChhHHHHHHhhcCCCcEEECcC------CC-CCCc-hhhhcCCCCCEEECCCCcccchHHHH
Confidence 445555555554 22 23444445555555555555 43 2222 345555555555555555554 4444
Q ss_pred HhhccCCcEeecCCCCcccccc--hhhhhccccceeeccCccccccCCc----ccccCcccccccc
Q 044264 175 LCELYNLQLLNVESCQDLKELP--QGFGKLINLMYLLNRGTESLRYLPA----GIERLTSLRRVEK 234 (439)
Q Consensus 175 i~~l~~L~~L~l~~~~~~~~l~--~~i~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l 234 (439)
++.+++|++|++++|. +..+| ..++.+++|++|++++|.. ...|. .+..+++|+.|++
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETT
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccC
Confidence 5555555555555555 33332 4455555555555555543 22222 3444555555543
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=1.9e-13 Score=113.64 Aligned_cols=131 Identities=19% Similarity=0.152 Sum_probs=96.3
Q ss_pred hcCCceeEEeCCccccccccccc-cccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhh
Q 044264 123 DELTCLRALDFAMFQMWSWNGFI-KEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 123 ~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
...++|+.|++++ +.+. ..+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+..
T Consensus 21 ~~~~~L~~L~l~~------n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 21 RTPAAVRELVLDN------CKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp SCTTSCSEEECCS------CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred CCcccCCEEECCC------CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 3458899999999 7633 37788788999999999999998887 67888999999999999844447877788
Q ss_pred ccccceeeccCccccccCC--cccccCcccccccceeeccccccc---cccccccCcceeeeccc
Q 044264 202 LINLMYLLNRGTESLRYLP--AGIERLTSLRRVEKFVVGRGVARS---SELENKKNLIDLLLYFG 261 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~ 261 (439)
+++|++|++++|.. ..+| ..+..+++|+.|++++|......+ ..+..+++|+.|++..+
T Consensus 94 l~~L~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 94 LPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CTTCCEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCCEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999999874 4444 456677777777777665543322 24445555555555444
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=1.2e-13 Score=112.31 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=103.8
Q ss_pred cCCceeEEeCCccccccccccc-cccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhc
Q 044264 124 ELTCLRALDFAMFQMWSWNGFI-KEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKL 202 (439)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l 202 (439)
..++|+.|++++ +.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+..+
T Consensus 15 ~~~~l~~L~l~~------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDN------SRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTT------CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CCccCeEEEccC------CcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 457899999999 7744 37888889999999999999999888 678899999999999999444488888889
Q ss_pred cccceeeccCccccccCC--cccccCcccccccceeeccccccc---cccccccCcceeeec
Q 044264 203 INLMYLLNRGTESLRYLP--AGIERLTSLRRVEKFVVGRGVARS---SELENKKNLIDLLLY 259 (439)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 259 (439)
++|++|++++|.. ..+| ..+..+++|++|++++|...+..+ ..+..+++|+.|+++
T Consensus 88 ~~L~~L~ls~N~i-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNKI-KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSCC-CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCcC-CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999999985 4433 678888899999888887665443 457777888877764
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=5.2e-13 Score=111.91 Aligned_cols=130 Identities=23% Similarity=0.247 Sum_probs=88.6
Q ss_pred cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC
Q 044264 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP 172 (439)
Q Consensus 93 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 172 (439)
+..+++|+.|++.+|. +. .++......++|++|++++ |. +..+ ..+..+++|++|++++|.++.+|
T Consensus 15 ~~~~~~L~~L~l~~n~-----l~-~i~~~~~~~~~L~~L~Ls~------N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-----IP-VIENLGATLDQFDAIDFSD------NE-IRKL-DGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp EECTTSCEEEECTTSC-----CC-SCCCGGGGTTCCSEEECCS------SC-CCEE-CCCCCCSSCCEEECCSSCCCEEC
T ss_pred cCCcCCceEEEeeCCC-----Cc-hhHHhhhcCCCCCEEECCC------CC-CCcc-cccccCCCCCEEECCCCcccccC
Confidence 4466778888888876 23 2344333344788888887 65 3334 45777888888888888888777
Q ss_pred hhH-hhccCCcEeecCCCCcccccch--hhhhccccceeeccCccccccCCcc----cccCcccccccceeec
Q 044264 173 ETL-CELYNLQLLNVESCQDLKELPQ--GFGKLINLMYLLNRGTESLRYLPAG----IERLTSLRRVEKFVVG 238 (439)
Q Consensus 173 ~~i-~~l~~L~~L~l~~~~~~~~l~~--~i~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~ 238 (439)
+.+ +.+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.. +..+++|+.|++..+.
T Consensus 81 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 544 778888888888887 566665 677788888888888774 345543 5666666666665554
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=3e-12 Score=118.64 Aligned_cols=284 Identities=12% Similarity=0.086 Sum_probs=168.4
Q ss_pred CCCeeEEEecCCCCChhhHhhhhhHhhhc-CCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh-
Q 044264 96 VKRLRSLLIDDNGDDEFWLTEVLPQLFDE-LTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE- 173 (439)
Q Consensus 96 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~- 173 (439)
+.+++.|.+.++- .......+.. +++|+.|+|++ +.+ ......-+.++.++.+.+..+ .+|+
T Consensus 24 ~~~l~~L~l~g~i------~~~~~~~l~~~l~~L~~LdLs~------n~i-~~~~~~~~~~~~~~~~~~~~~---~I~~~ 87 (329)
T 3sb4_A 24 ANSITHLTLTGKL------NAEDFRHLRDEFPSLKVLDISN------AEI-KMYSGKAGTYPNGKFYIYMAN---FVPAY 87 (329)
T ss_dssp HHHCSEEEEEEEE------CHHHHHHHHHSCTTCCEEEEEE------EEE-CCEEESSSSSGGGCCEEECTT---EECTT
T ss_pred hCceeEEEEeccc------cHHHHHHHHHhhccCeEEecCc------cee-EEecCcccccccccccccccc---ccCHH
Confidence 5678888888753 2111222344 78899999998 552 211111112222344444443 3332
Q ss_pred hHhh--------ccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCcccccccceeec----cc
Q 044264 174 TLCE--------LYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVG----RG 240 (439)
Q Consensus 174 ~i~~--------l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~ 240 (439)
.+.+ +++|+.|++.+ . +..++. .+..|++|+.+.+..+....-.+..+..+.++..+...... ..
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~ 165 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN 165 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST
T ss_pred HhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc
Confidence 3455 78888888887 4 555544 57788888888888776433333456666666655543311 11
Q ss_pred cccccccccccCcc-eeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhh-cccCccEEeecCCC
Q 044264 241 VARSSELENKKNLI-DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM-SLTDLRILTLSHCI 318 (439)
Q Consensus 241 ~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~-~~~~L~~L~l~~~~ 318 (439)
......+..+..|+ .+.+..... ....+...-....+++.+.+.+.-.... ...+. .+++|+.+++++|.
T Consensus 166 ~i~~~~f~~~~~L~~~i~~~~~~~-------l~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETTIQVGAMGK-------LEDEIMKAGLQPRDINFLTIEGKLDNAD-FKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp TTTTSCEEESCCCEEEEEECTTCC-------HHHHHHHTTCCGGGCSEEEEEECCCHHH-HHHHHHHCTTCCEEECTTBC
T ss_pred cccccccccccccceeEEecCCCc-------HHHHHhhcccCccccceEEEeeeecHHH-HHHHHHhcCCCeEEECCCCC
Confidence 11223355566666 344433210 1123333334566778888876543322 12222 48899999999876
Q ss_pred CCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcc-eeeccCCCCccccccCCCcccccCc
Q 044264 319 NCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLK-TIQFWDMYVLKEWDYGDTIKGEIMP 396 (439)
Q Consensus 319 ~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~p 396 (439)
.....+. +.+|++|+.|.+.++ ++.++... +.++++|+ .+.+.+ .++.+..... ..++
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~a-------------F~~~~~L~~~l~l~~--~l~~I~~~aF---~~c~ 297 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV-------------FSNCGRLAGTLELPA--SVTAIEFGAF---MGCD 297 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT--CCEECTTT-------------TTTCTTCCEEEEECT--TCCEECTTTT---TTCT
T ss_pred cceecHhhhhCCCCCCEEECCcc--cceehHHH-------------hhCChhccEEEEEcc--cceEEchhhh---hCCc
Confidence 5433333 888999999999886 66666532 66788898 999976 5666543322 4578
Q ss_pred ccceeeecccccccCCCC-CCCCCCCccEEE
Q 044264 397 RLSSLCIARCPTLRALPD-HLLQTTTLQKLE 426 (439)
Q Consensus 397 ~L~~L~i~~c~~l~~l~~-~l~~~~~L~~L~ 426 (439)
+|++|++.++ .++.|+. .+.++++|+.|.
T Consensus 298 ~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 298 NLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred cCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 8999998776 6777765 566788888875
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=8.4e-14 Score=142.39 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=114.2
Q ss_pred CCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCC
Q 044264 87 APFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRL 166 (439)
Q Consensus 87 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 166 (439)
...+..+..++.|+.|++++|. +. .+|..+..+++|++|+|++ |. +..+|..+..+++|++|+|++|
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~-----l~-~l~~~~~~l~~L~~L~Ls~------N~-l~~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQ-----IF-NISANIFKYDFLTRLYLNG------NS-LTELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp --------CCCCCCEEECTTSC-----CS-CCCGGGGGCCSCSCCBCTT------SC-CSCCCGGGGGGTTCCEEECTTS
T ss_pred ecChhhhccCCCCcEEECCCCC-----CC-CCChhhcCCCCCCEEEeeC------Cc-CcccChhhhCCCCCCEEeCcCC
Confidence 3346678889999999999997 33 5666677999999999999 77 5588999999999999999999
Q ss_pred CCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcc-cccccceeecccccccc
Q 044264 167 KIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTS-LRRVEKFVVGRGVARSS 245 (439)
Q Consensus 167 ~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~ 245 (439)
.++.+|..++++++|++|+|++|. +..+|..++.|++|++|++++|......|..+..+.. +..+++.+|......+.
T Consensus 281 ~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 281 RLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 999999999999999999999998 7799999999999999999999976666665544322 22356666666555444
Q ss_pred ccccccCcceeeeccc
Q 044264 246 ELENKKNLIDLLLYFG 261 (439)
Q Consensus 246 ~l~~l~~L~~L~l~~~ 261 (439)
.|+.|+++.+
T Consensus 360 ------~l~~l~l~~n 369 (727)
T 4b8c_D 360 ------ERRFIEINTD 369 (727)
T ss_dssp ------C---------
T ss_pred ------ccceeEeecc
Confidence 3445555444
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=2.6e-12 Score=109.20 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=70.5
Q ss_pred eEEeCCccccccccccccccccccccccccceeecCCCCCccCChh--HhhccCCcEeecCCCCcccccchhhhhccccc
Q 044264 129 RALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET--LCELYNLQLLNVESCQDLKELPQGFGKLINLM 206 (439)
Q Consensus 129 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~ 206 (439)
+++++++ +. +..+|..+.. +|++|++++|.++.++.. ++.+++|++|++++|......|..+..+++|+
T Consensus 11 ~~l~~s~------~~-l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTG------RG-LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTT------SC-CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEEEcCC------CC-cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 4556655 44 4455544332 566666666666665542 56666666666666663333355566666666
Q ss_pred eeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeeccc
Q 044264 207 YLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
+|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 6666666643333344555666666666666555544555555555555555554
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.2e-12 Score=109.71 Aligned_cols=129 Identities=17% Similarity=0.108 Sum_probs=103.0
Q ss_pred hhcCCceeEEeCCcccccccccccccccccccccc-ccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchh-h
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV-HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-F 199 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~-i 199 (439)
+..+.+|+.|++++ +. +..++. +..+. +|++|++++|.++.+ ..++.+++|++|++++|. +..+|.. +
T Consensus 15 ~~~~~~L~~L~l~~------n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~ 84 (176)
T 1a9n_A 15 YTNAVRDRELDLRG------YK-IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLD 84 (176)
T ss_dssp EECTTSCEEEECTT------SC-CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHH
T ss_pred cCCcCCceEEEeeC------CC-CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchh
Confidence 56788999999999 76 445654 45444 999999999999887 578899999999999998 6677754 4
Q ss_pred hhccccceeeccCccccccCCc--ccccCcccccccceeecccccccc----ccccccCcceeeecccC
Q 044264 200 GKLINLMYLLNRGTESLRYLPA--GIERLTSLRRVEKFVVGRGVARSS----ELENKKNLIDLLLYFGH 262 (439)
Q Consensus 200 ~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 262 (439)
..+++|++|++++|.. ..+|. .+..+++|+.|++.+|.... .+. .+..+++|+.|+++.+.
T Consensus 85 ~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 8999999999999984 66665 67888999999998887653 333 37788888888887773
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=6.7e-12 Score=106.65 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=71.3
Q ss_pred eEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccc-hhhhhccccce
Q 044264 129 RALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELP-QGFGKLINLMY 207 (439)
Q Consensus 129 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~ 207 (439)
+++++++ +. +..+|..+ .++|++|++++|.++.+|..+..+++|++|++++|. +..++ ..+..+++|++
T Consensus 13 ~~l~~~~------~~-l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSN------KG-LKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTT------SC-CSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CEEEcCC------CC-CCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCE
Confidence 3455555 44 44555433 246666777766666666666666677777776666 43433 34666666666
Q ss_pred eeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeeccc
Q 044264 208 LLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
|++++|......|..+..+++|+.|++.+|......+..+..+++|+.|++++|
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 666666643333344566666666666666554433334555555555555554
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=7e-14 Score=119.67 Aligned_cols=136 Identities=23% Similarity=0.188 Sum_probs=71.0
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
+.....++.++++.+...+....+..+|..+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhc
Confidence 444555555555552111000012222335666666777777666666666 66666667777766665 5566666666
Q ss_pred ccccceeeccCccccccCCcccccCcccccccceeeccccccc-cccccccCcceeeeccc
Q 044264 202 LINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARS-SELENKKNLIDLLLYFG 261 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 261 (439)
+++|++|++++|.. ..+| .+..+++|+.|++.+|....... ..+..+++|+.|++++|
T Consensus 92 ~~~L~~L~L~~N~l-~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 92 ADTLEELWISYNQI-ASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHCSEEEEEEEEC-CCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCcCCEEECcCCcC-CcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 66666666666653 3333 34555555555555554432111 23444444444444444
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=4.1e-12 Score=107.97 Aligned_cols=127 Identities=23% Similarity=0.225 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhH-hhhcCCceeEEeCCccccccccccccccccccccc
Q 044264 77 RHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQ-LFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155 (439)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 155 (439)
+.+.+.+.....+|..+.. +++.|++.+|. +....+. .+..+++|++|++++ |.+....|..+..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-----i~~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-----LGRISSDGLFGRLPHLVKLELKR------NQLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-----CCSBCCSCSGGGCTTCCEEECCS------SCCCCBCTTTTTTC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-----CCccCCccccccCCCCCEEECCC------CCCCCcCHhHcCCc
Confidence 4555666666677765543 77778887776 3433332 367777788888877 66444456667777
Q ss_pred cccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcccc
Q 044264 156 VHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESL 216 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~ 216 (439)
++|++|++++|.++.++. .+..+++|++|++++|......|..+..+++|++|++++|+..
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 778888888877776654 3677777777777777744444666777777777777777653
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=2.9e-14 Score=122.09 Aligned_cols=145 Identities=19% Similarity=0.163 Sum_probs=107.6
Q ss_pred CeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhh
Q 044264 98 RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCE 177 (439)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~ 177 (439)
.++...+.+... ....+|..+..+++|++|++++ |. +..+| .+..+++|++|++++|.++.+|..+..
T Consensus 24 ~l~~~~l~~~~~----~l~~l~~~~~~l~~L~~L~ls~------n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 24 EAEKVELHGMIP----PIEKMDATLSTLKACKHLALST------NN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp TCSEEECCBCCT----TCCCCHHHHHHTTTCSEEECSE------EE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred chheeEeccccC----cHhhhhHHHhcCCCCCEEECCC------CC-Ccccc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 455555555421 1233455788899999999998 66 44566 788899999999999998889988888
Q ss_pred ccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCC--cccccCcccccccceeecccccccc----------
Q 044264 178 LYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLP--AGIERLTSLRRVEKFVVGRGVARSS---------- 245 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~---------- 245 (439)
+++|++|++++|. +..+| .+..+++|++|++++|.. ..++ ..+..+++|+.|++.+|......+.
T Consensus 92 ~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 92 ADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred CCcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 8999999999987 66676 588899999999998874 4333 3578889999999988876544332
Q ss_pred ccccccCcceee
Q 044264 246 ELENKKNLIDLL 257 (439)
Q Consensus 246 ~l~~l~~L~~L~ 257 (439)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 256666777665
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=2.9e-11 Score=102.71 Aligned_cols=123 Identities=19% Similarity=0.254 Sum_probs=86.0
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVH 157 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 157 (439)
.+.+.+.....+|..+. ++++.|++.+|. + ..+|..|..+++|+.|++++ |.+....+..+..+++
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-----i-~~ip~~~~~l~~L~~L~Ls~------N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-----F-TLVPKELSNYKHLTLIDLSN------NRISTLSNQSFSNMTQ 79 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSC-----C-CSCCGGGGGCTTCCEEECCS------SCCCCCCTTTTTTCTT
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCc-----C-chhHHHhhcccCCCEEECCC------CcCCEeCHhHccCCCC
Confidence 44555556666776543 578888888876 2 24556677888888888887 6644444456777888
Q ss_pred cceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccc
Q 044264 158 LRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTES 215 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~ 215 (439)
|++|+|++|.++.+++ .+..+++|++|++++|. +..+|. .+..+++|+.|++++|+.
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 8888888888777764 57778888888888877 555554 467777888888877764
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=3.6e-11 Score=100.67 Aligned_cols=126 Identities=24% Similarity=0.294 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccc
Q 044264 77 RHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156 (439)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 156 (439)
+.+.+.......+|..+. ++++.|++++|. +....+..+..+++|++|++++ +.+....+..+..++
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~ 76 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSQ------NQIQSLPDGVFDKLT 76 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCS------SCCCCCCTTTTTTCT
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCc-----ccEeCHHHhcCcccccEEECCC------CcceEeChhHccCCC
Confidence 445556666666665443 678888888876 4555555567788888888887 663333334467788
Q ss_pred ccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchh-hhhccccceeeccCcccc
Q 044264 157 HLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESL 216 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~ 216 (439)
+|++|++++|.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|+..
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 888888888888777654 5778888888888887 5566554 467888888888887653
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.15 E-value=5.2e-10 Score=106.05 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=55.2
Q ss_pred HhCCCCCCccEEEEeeccCC-----ccCCchhhcccCccEEeecCCCCCCcCC--CCCCcCCcCeeeeccccCeeEeCCc
Q 044264 277 EALQPPPNLKHLGIHQYRGN-----NVHPHWMMSLTDLRILTLSHCINCEHLP--PLGKLPSLEQLYFYSMGSVKRVGDE 349 (439)
Q Consensus 277 ~~l~~~~~L~~L~l~~~~~~-----~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~ 349 (439)
..+..+++|+.+.+.++... .+.+..+..|++|+.+++..+ ...++ .+.+|++|+.+.+..+ ++.++..
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~ 340 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFS 340 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTT
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHH
Confidence 34555666666666655443 222445556777777777642 23333 2666677777777443 4444432
Q ss_pred cccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccC-cccceeeecc
Q 044264 350 FLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIM-PRLSSLCIAR 405 (439)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-p~L~~L~i~~ 405 (439)
.+..+ +|+.+++.+. .+..+..... ..+ ..+..|.+-.
T Consensus 341 -------------aF~~~-~L~~l~l~~n-~~~~l~~~~F---~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 341 -------------AFNNT-GIKEVKVEGT-TPPQVFEKVW---YGFPDDITVIRVPA 379 (401)
T ss_dssp -------------SSSSS-CCCEEEECCS-SCCBCCCSSC---CCSCTTCCEEEECG
T ss_pred -------------hCCCC-CCCEEEEcCC-CCcccccccc---cCCCCCccEEEeCH
Confidence 14455 6777777654 2333332221 122 3556666654
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=1e-10 Score=108.24 Aligned_cols=282 Identities=11% Similarity=0.037 Sum_probs=164.4
Q ss_pred CceeEEEEEcCCCCCcCcccCC-CCCeeEEEecCCCCChhhHh--hhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCS-VKRLRSLLIDDNGDDEFWLT--EVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
.+++++.+.+.-...-...+.. +++|+.|++++|. +. ...+ ..++.++.+.+.. +. + -+.
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~-----i~~~~~~~---~~~~~~~~~~~~~------~~-I--~~~ 87 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAE-----IKMYSGKA---GTYPNGKFYIYMA------NF-V--PAY 87 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEE-----ECCEEESS---SSSGGGCCEEECT------TE-E--CTT
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcce-----eEEecCcc---ccccccccccccc------cc-c--CHH
Confidence 4567777765322100111222 7889999999986 22 1111 1223334444443 22 1 113
Q ss_pred cccc--------ccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccc---ccc
Q 044264 151 NIEK--------LVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTES---LRY 218 (439)
Q Consensus 151 ~~~~--------l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~---~~~ 218 (439)
.|.. +++|+.|.+.. .++.+++ ++..|++|+.|++.++....--+..+..+.++..+....... ...
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred HhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc
Confidence 3445 99999999998 8888875 588899999999998873333344677777777776654221 011
Q ss_pred C-CcccccCcccc-cccceeecccc-ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccC
Q 044264 219 L-PAGIERLTSLR-RVEKFVVGRGV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRG 295 (439)
Q Consensus 219 ~-~~~~~~l~~L~-~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 295 (439)
+ ...+..+.+|+ .+.+....... .....-....+++.+.+.+.. ...........+++|+.+++.++..
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l--------~~~~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL--------DNADFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC--------CHHHHHHHHHHCTTCCEEECTTBCC
T ss_pred ccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeee--------cHHHHHHHHHhcCCCeEEECCCCCc
Confidence 1 12244455554 22221111000 000111134566677766552 1122222223478999999999888
Q ss_pred CccCCchhhcccCccEEeecCCCCCCcCCC--CCCcCCcC-eeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcce
Q 044264 296 NNVHPHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLE-QLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKT 372 (439)
Q Consensus 296 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 372 (439)
..+.+..+..|++|+.+++.++ ...++. +.+|++|+ .+.+.+ .++.++.. .+.++++|+.
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~-------------aF~~c~~L~~ 301 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG-------------AFMGCDNLRY 301 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT-------------TTTTCTTEEE
T ss_pred ceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh-------------hhhCCccCCE
Confidence 8774566889999999999987 444543 88999999 999987 46666643 2677899999
Q ss_pred eeccCCCCccccccCCCcccccCcccceee
Q 044264 373 IQFWDMYVLKEWDYGDTIKGEIMPRLSSLC 402 (439)
Q Consensus 373 L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~ 402 (439)
+++.+. .++.+..... ..+++|+.+.
T Consensus 302 l~l~~n-~i~~I~~~aF---~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGD-KITTLGDELF---GNGVPSKLIY 327 (329)
T ss_dssp EEECSS-CCCEECTTTT---CTTCCCCEEE
T ss_pred EEeCCC-ccCccchhhh---cCCcchhhhc
Confidence 998653 4555543221 3456666554
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=1.6e-10 Score=96.71 Aligned_cols=62 Identities=32% Similarity=0.473 Sum_probs=28.7
Q ss_pred cccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch-hhhhccccceeeccCcc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTE 214 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~ 214 (439)
+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc
Confidence 34455555555555554444432 3445555555555544 333332 23444455555554444
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.08 E-value=6.8e-09 Score=98.34 Aligned_cols=235 Identities=11% Similarity=0.065 Sum_probs=133.3
Q ss_pred ccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccccCCcccccCcccccccc
Q 044264 157 HLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEK 234 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 234 (439)
+|+.+.+..+ ++.++. ++.+ .+|+.+.+.. . +..++ ..+..|.+|+.+++..+. +..++...-.+.+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEe
Confidence 4555554433 333332 2333 2455555543 1 23322 245555555555555443 2333332222455555554
Q ss_pred eeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEee
Q 044264 235 FVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314 (439)
Q Consensus 235 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l 314 (439)
.. .........+..|++|+.+.+..+-... -..++.. .+|+.+.+.. ....+....+..|++|+.+++
T Consensus 211 p~-~l~~I~~~aF~~~~~L~~l~l~~~l~~I---------~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 211 PV-TLKEIGSQAFLKTSQLKTIEIPENVSTI---------GQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CT-TCCEECTTTTTTCTTCCCEECCTTCCEE---------CTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEE
T ss_pred CC-chheehhhHhhCCCCCCEEecCCCccCc---------ccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEe
Confidence 32 1222333456666666666665431000 0123333 5899999943 344443567889999999999
Q ss_pred cCCCCC----CcCC--CCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCC
Q 044264 315 SHCINC----EHLP--PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGD 388 (439)
Q Consensus 315 ~~~~~~----~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 388 (439)
.++... ..++ .+.+|++|+.+.+..+ ++.++... +.++++|+.+.|.+ +++.+....
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~a-------------F~~c~~L~~l~lp~--~l~~I~~~a 341 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGL-------------LGGNRKVTQLTIPA--NVTQINFSA 341 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTT-------------TTTCCSCCEEEECT--TCCEECTTS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhh-------------hcCCCCccEEEECc--cccEEcHHh
Confidence 887553 1233 3889999999999843 66666532 66789999999965 355554332
Q ss_pred CcccccCcccceeeecccccccCCCC-CCCCCC-CccEEEEcCC
Q 044264 389 TIKGEIMPRLSSLCIARCPTLRALPD-HLLQTT-TLQKLEIWGC 430 (439)
Q Consensus 389 ~~~~~~~p~L~~L~i~~c~~l~~l~~-~l~~~~-~L~~L~i~~c 430 (439)
. ..+ +|+++.+.++ .+..++. .+.+++ +++.|.+-..
T Consensus 342 F---~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 342 F---NNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp S---SSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred C---CCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence 2 345 8999999998 4555543 345564 7888888643
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=4.7e-10 Score=93.42 Aligned_cols=82 Identities=26% Similarity=0.349 Sum_probs=39.0
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchh-hhhcc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQG-FGKLI 203 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~ 203 (439)
++|++|++++ |.+....|..+..+++|++|+|++|.++.+|.. +.++++|++|++++|. +..+|.. +..++
T Consensus 33 ~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNN------NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLK 105 (174)
T ss_dssp TTCSEEECCS------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCcEEEeCC------CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhcccc
Confidence 4455555554 442222234444555555555555555554443 2445555555555554 3344332 44555
Q ss_pred ccceeeccCcc
Q 044264 204 NLMYLLNRGTE 214 (439)
Q Consensus 204 ~L~~L~l~~~~ 214 (439)
+|++|++++|+
T Consensus 106 ~L~~L~L~~N~ 116 (174)
T 2r9u_A 106 SLTHIYLYNNP 116 (174)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 55555555554
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=8.3e-10 Score=91.89 Aligned_cols=100 Identities=23% Similarity=0.344 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc-ccccc
Q 044264 77 RHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK-NIEKL 155 (439)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~l 155 (439)
+.+.+.+.....+|..+. ++|+.|++++|. +.+..|..|..+++|++|+|++ |. +..+|. .+..+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~Ls~------N~-l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-----ITKLEPGVFDHLVNLQQLYFNS------NK-LTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCS------SC-CCCCCTTTTTTC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-----ccccCHHHhcCCcCCCEEECCC------CC-CCccChhHhCCc
Confidence 345555566666666553 667777777766 4555566667777777777777 55 333443 34667
Q ss_pred cccceeecCCCCCccCChh-HhhccCCcEeecCCCC
Q 044264 156 VHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQ 190 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 190 (439)
++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus 81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred chhhEEECCCCccceeCHHHhccccCCCEEEeCCCC
Confidence 7777777777777766654 6667777777777776
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=9.7e-10 Score=91.17 Aligned_cols=65 Identities=26% Similarity=0.422 Sum_probs=30.0
Q ss_pred ccccccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch-hhhhccccceeeccCcc
Q 044264 149 PKNIEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTE 214 (439)
Q Consensus 149 ~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~ 214 (439)
|..+..+++|++|+|++|.++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|+
T Consensus 47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 33344444555555555554444432 2444555555555444 333333 24445555555555444
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.94 E-value=1.8e-09 Score=89.57 Aligned_cols=101 Identities=25% Similarity=0.317 Sum_probs=70.0
Q ss_pred eeEEeCCccccccccccccccccccccccccceeecCCCCCccC-ChhHhhccCCcEeecCCCCcccccch-hhhhcccc
Q 044264 128 LRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQ-GFGKLINL 205 (439)
Q Consensus 128 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L 205 (439)
.+.+++++ +. +..+|..+ .++|++|+|++|.++.+ |..+..+++|++|++++|. +..+|. .+..+++|
T Consensus 11 ~~~l~~s~------n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 11 GTTVDCSG------KS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQL 80 (170)
T ss_dssp TTEEECTT------SC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCEEEeCC------CC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCC
Confidence 45677777 66 55566554 36788888888888777 4557788888888888887 556555 35778888
Q ss_pred ceeeccCccccccCC-cccccCcccccccceeecc
Q 044264 206 MYLLNRGTESLRYLP-AGIERLTSLRRVEKFVVGR 239 (439)
Q Consensus 206 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 239 (439)
++|++++|.. ..+| ..+..+++|+.|++.+|..
T Consensus 81 ~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 81 TQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCcc-CEeCHHHhcCCCCCCEEEeCCCCC
Confidence 8888888774 3444 3466677777777766654
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.93 E-value=1.6e-08 Score=95.93 Aligned_cols=284 Identities=14% Similarity=0.116 Sum_probs=148.5
Q ss_pred cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccc-ccccccccccceeecCCC---
Q 044264 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI-PKNIEKLVHLRYLNLSRL--- 166 (439)
Q Consensus 91 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~--- 166 (439)
.+|.+|.+|+.+.+..+ +...-...|.+|.+|+.+++.. + +..+ ...+..+..|+.+.+..+
T Consensus 65 ~AF~~c~~L~~i~lp~~------i~~I~~~aF~~c~~L~~i~lp~------~--l~~I~~~aF~~c~~L~~i~~p~~l~~ 130 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST------VREIGEFAFENCSKLEIINIPD------S--VKMIGRCTFSGCYALKSILLPLMLKS 130 (394)
T ss_dssp TTTTTCTTEEEEECCTT------CCEECTTTTTTCTTCCEECCCT------T--CCEECTTTTTTCTTCCCCCCCTTCCE
T ss_pred HHhhCCCCceEEEeCCC------ccCcchhHhhCCCCCcEEEeCC------C--ceEccchhhcccccchhhcccCceee
Confidence 35667777777777643 2444445577777777777754 2 2222 223445555555444321
Q ss_pred ---------C---------CccC-ChhHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccccCC-ccccc
Q 044264 167 ---------K---------IEKL-PETLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLRYLP-AGIER 225 (439)
Q Consensus 167 ---------~---------~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~ 225 (439)
. +..+ ...+.++.+|+.+.+.++. ..++ ..+..+.+|+.+.+..+ ...++ ..+..
T Consensus 131 i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~ 206 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAE 206 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTT
T ss_pred ecceeeecccccccccCccccccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC--ceEeCchhhcc
Confidence 1 1111 2356778899999987653 3333 35778889999888654 22222 34667
Q ss_pred CcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhc
Q 044264 226 LTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMS 305 (439)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~ 305 (439)
+..|+.+.+..+.. ..........+|+.+.+...... --...+..+.+|+.+.+..+..... ...+..
T Consensus 207 ~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~~~~---------i~~~~f~~~~~l~~~~~~~~~~~i~-~~~F~~ 274 (394)
T 4fs7_A 207 CILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDSFTE---------LGKSVFYGCTDLESISIQNNKLRIG-GSLFYN 274 (394)
T ss_dssp CTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTTCCE---------ECSSTTTTCSSCCEEEECCTTCEEC-SCTTTT
T ss_pred ccccceeecCCCce--EeehhhcccCCCceEEECCCcee---------cccccccccccceeEEcCCCcceee-cccccc
Confidence 77888776643321 11222334456666666433100 0012345667777777765433221 344556
Q ss_pred ccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccc
Q 044264 306 LTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWD 385 (439)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 385 (439)
+..++.+......... ..+..+.+|+.+.+..+ ++.++.. .+..+++|+.+.|.+ .++.+.
T Consensus 275 ~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~-------------aF~~c~~L~~i~lp~--~v~~I~ 335 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEE-------------AFESCTSLVSIDLPY--LVEEIG 335 (394)
T ss_dssp CTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTT-------------TTTTCTTCCEECCCT--TCCEEC
T ss_pred ccccceeccCceeecc--ccccccccccccccccc--cceechh-------------hhcCCCCCCEEEeCC--cccEEh
Confidence 6666666655432111 12455666666666543 4444332 144556666666643 233332
Q ss_pred cCCCcccccCcccceeeecccccccCCCC-CCCCCCCccEEEEc
Q 044264 386 YGDTIKGEIMPRLSSLCIARCPTLRALPD-HLLQTTTLQKLEIW 428 (439)
Q Consensus 386 ~~~~~~~~~~p~L~~L~i~~c~~l~~l~~-~l~~~~~L~~L~i~ 428 (439)
... -..+.+|+++.+... ++.|.. .+.+|++|+.+++.
T Consensus 336 ~~a---F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 336 KRS---FRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTT---TTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred HHh---ccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 211 123455666665432 444432 34556666666663
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.92 E-value=4.7e-08 Score=92.72 Aligned_cols=304 Identities=13% Similarity=0.065 Sum_probs=192.2
Q ss_pred CCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccc------cccccc-
Q 044264 73 GQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQM------WSWNGF- 144 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~- 144 (439)
..+++.+.+.. ....+ ..+|.+|++|+.+.+..+- .......|..+..|+.+.+...-. +..+..
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l------~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSV------KMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTC------CEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCc------eEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 35678777753 34445 4468889999999997653 444455688888888776653100 000110
Q ss_pred -------ccc-cccccccccccceeecCCCCCccCC-hhHhhccCCcEeecCCCCccccc-chhhhhccccceeeccCcc
Q 044264 145 -------IKE-IPKNIEKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKEL-PQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 145 -------~~~-~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l-~~~i~~l~~L~~L~l~~~~ 214 (439)
... -...|..+.+|+.+.+..+. ..++ ..+.++.+|+.+.+..+ +..+ ...+.++..|+.+.+..+.
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc
Confidence 001 12346778899999987653 4444 46778999999999765 3333 3357788899988876543
Q ss_pred ccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeecc
Q 044264 215 SLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYR 294 (439)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 294 (439)
. .+........+|+.+.+... ........+..+..|+.+.+..+... -....+..+..++.+......
T Consensus 220 ~--~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~---------i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 220 Y--YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR---------IGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp C--EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE---------ECSCTTTTCTTCCEEEECSSE
T ss_pred e--EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce---------eeccccccccccceeccCcee
Confidence 2 22233344567777665422 22233445778889999888765211 112346678888888776544
Q ss_pred CCccCCchhhcccCccEEeecCCCCCCcCC--CCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcce
Q 044264 295 GNNVHPHWMMSLTDLRILTLSHCINCEHLP--PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKT 372 (439)
Q Consensus 295 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 372 (439)
.. ...+..+.+|+.+.+..+ ...++ .+.+|.+|+.+.+..+ ++.++.. .+.++.+|+.
T Consensus 288 i~---~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~-------------aF~~c~~L~~ 347 (394)
T 4fs7_A 288 VP---EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKR-------------SFRGCTSLSN 347 (394)
T ss_dssp EC---TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTT-------------TTTTCTTCCE
T ss_pred ec---cccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHH-------------hccCCCCCCE
Confidence 32 345668999999999764 33343 3788999999999643 6666543 2667889999
Q ss_pred eeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEE
Q 044264 373 IQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKL 425 (439)
Q Consensus 373 L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L 425 (439)
+.+... ++.+.... -..+++|+++.+... ++.+...+..+++|+.+
T Consensus 348 i~lp~~--l~~I~~~a---F~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 348 INFPLS--LRKIGANA---FQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECCCTT--CCEECTTT---BTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred EEECcc--ccEehHHH---hhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 998642 55554322 145688999998753 45554456678887765
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.87 E-value=6.2e-10 Score=104.44 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=27.6
Q ss_pred ccccceeecCCCCCccCC-----hhH-hhccCCcEeecCCCCccc----ccchhhhhccccceeeccCcc
Q 044264 155 LVHLRYLNLSRLKIEKLP-----ETL-CELYNLQLLNVESCQDLK----ELPQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp-----~~i-~~l~~L~~L~l~~~~~~~----~l~~~i~~l~~L~~L~l~~~~ 214 (439)
+++|++|+|++|.++... ..+ ...++|++|++++|.... .++..+..+++|++|++++|.
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 445555666655544221 111 123455555555555211 123333445555555555554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.75 E-value=7.9e-10 Score=103.75 Aligned_cols=166 Identities=14% Similarity=0.059 Sum_probs=87.6
Q ss_pred CCceeEEeCCccccccccccccc----cccccc-cccccceeecCCCCCcc--CChhHhhccCCcEeecCCCCcccccch
Q 044264 125 LTCLRALDFAMFQMWSWNGFIKE----IPKNIE-KLVHLRYLNLSRLKIEK--LPETLCELYNLQLLNVESCQDLKELPQ 197 (439)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~-~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~l~~ 197 (439)
.+.|+.|++++ |.+... +...+. ..++|++|+|++|.++. +......+++|++|++++|.....-..
T Consensus 71 ~~~L~~L~Ls~------n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAG------VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HTTCCEEECTT------SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred HhhCCEEEecC------CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence 35677888887 543221 222222 23578888888887652 222234456777888887763222112
Q ss_pred hhh-----hccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCCh
Q 044264 198 GFG-----KLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKD 272 (439)
Q Consensus 198 ~i~-----~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 272 (439)
.+. ..++|++|++++|....... ..+...+..+++|++|++++|.... ...
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~--------------------~~l~~~L~~~~~L~~L~Ls~N~l~~----~g~ 200 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGV--------------------AVLMEGLAGNTSVTHLSLLHTGLGD----EGL 200 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHH--------------------HHHHHHHHTCSSCCEEECTTSSCHH----HHH
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHH--------------------HHHHHHHhcCCCcCEEeCCCCCCCc----HHH
Confidence 221 24566667666665321100 0122223445556666666553111 012
Q ss_pred HHHHHhCCCCCCccEEEEeeccCCcc----CCchhhcccCccEEeecCCCCC
Q 044264 273 EEVLEALQPPPNLKHLGIHQYRGNNV----HPHWMMSLTDLRILTLSHCINC 320 (439)
Q Consensus 273 ~~~~~~l~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~ 320 (439)
..+...+..+++|++|++++|.+... +...+..+++|+.|++++|.+.
T Consensus 201 ~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 201 ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 23455566666777777777766542 1223345677888888877654
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=8.6e-09 Score=95.94 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=38.3
Q ss_pred cccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCcc----CCchhhcccCccEEeecCCCCC
Q 044264 249 NKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV----HPHWMMSLTDLRILTLSHCINC 320 (439)
Q Consensus 249 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~ 320 (439)
.+++|+.|.+.++.... ...........+++|++|+++.|.+... ++..+..+++|+.|++++|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~-----~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQN-----VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHH-----HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCch-----HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 46677777776653111 0011112223567888888877765541 1333456788888888877544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=6e-08 Score=90.31 Aligned_cols=101 Identities=20% Similarity=0.122 Sum_probs=74.7
Q ss_pred EEEEcC-CCCCcCcccCCCCCeeEEEecC-CCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccc
Q 044264 79 SMVKLG-KGAPFPISFCSVKRLRSLLIDD-NGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156 (439)
Q Consensus 79 l~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 156 (439)
+...+. ....+|. +..+++|+.|++++ |. +....+..|..+++|+.|+|++ |.+....|..|..++
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-----l~~~~~~~~~~l~~L~~L~l~~------N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQH-----LQHLELRDLRGLGELRNLTIVK------SGLRFVAPDAFHFTP 80 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-----CCEECGGGSCSCCCCSEEECCS------SCCCEECTTGGGSCS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-----CCCcChhHhccccCCCEEECCC------CccceeCHHHhcCCc
Confidence 344454 5667787 78888888888885 66 5555666788888888888888 775555556678888
Q ss_pred ccceeecCCCCCccCChhHhhccCCcEeecCCCCc
Q 044264 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQD 191 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 191 (439)
+|++|+|++|.++.+|..+.....|+.|++.+|..
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CCCEEeCCCCccceeCHHHcccCCceEEEeeCCCc
Confidence 88888888888888876554444488888888773
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=2.1e-08 Score=93.31 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCCCccEEEEeeccCCccCCchhh---cccCccEEeecCCCCCCc----CC-CCCCcCCcCeeeecccc
Q 044264 281 PPPNLKHLGIHQYRGNNVHPHWMM---SLTDLRILTLSHCINCEH----LP-PLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~l~~~~~---~~~~L~~L~l~~~~~~~~----~~-~~~~l~~L~~L~l~~~~ 341 (439)
.+++|++|.+.+|.+....+..+. .+++|+.|+|+.|..... ++ .+..+++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 478899999988776532112222 578899999988765432 22 23567888999888876
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=7.5e-08 Score=89.63 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=70.1
Q ss_pred EEEecCC-CCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc-cccccccccceeecCCCCCccCCh-hHhh
Q 044264 101 SLLIDDN-GDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEKLPE-TLCE 177 (439)
Q Consensus 101 ~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~lp~-~i~~ 177 (439)
.++..++ . ...+|. +..+++|+.|+|+++ |. +..++ ..|..+++|++|+|++|.++.+|+ .+.+
T Consensus 12 ~v~~~~~n~------l~~ip~-l~~~~~L~~L~l~~~-----n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGA------LDSLHH-LPGAENLTELYIENQ-----QH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78 (347)
T ss_dssp CEECCSSCC------CTTTTT-SCSCSCCSEEECCSC-----SS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS
T ss_pred EEEcCCCCC------CCccCC-CCCCCCeeEEEccCC-----CC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcC
Confidence 4466665 4 334666 788888888888730 44 44444 567888888888888888877654 5688
Q ss_pred ccCCcEeecCCCCcccccchhhhhccccceeeccCccc
Q 044264 178 LYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTES 215 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~ 215 (439)
+++|++|+|++|. +..+|..+.....|+.|++.+|..
T Consensus 79 l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 79 TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCCc
Confidence 8888888888887 666665443333388888888764
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.54 E-value=1.1e-06 Score=83.16 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=50.9
Q ss_pred ccCCCC-CeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccc-ccccccccccceeecCCCCCc
Q 044264 92 SFCSVK-RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI-PKNIEKLVHLRYLNLSRLKIE 169 (439)
Q Consensus 92 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~ 169 (439)
+|.+++ .|+.+.+... +...-...|.+|.+|+.+.+..+.- .. +..+ ...|..+.+|+.+.+..+ ++
T Consensus 58 aF~~~~~~L~sI~iP~s------vt~Ig~~AF~~C~~L~~i~~~~n~p---~~-l~~Ig~~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT------VTEIGSNAFYNCTSLKRVTIQDNKP---SC-VKKIGRQAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp TTTTCCSCCCEEEECTT------CCEECTTTTTTCTTCCEEEEGGGCC---CC-CCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred hccCCCCcCEEEEECCC------eeEEhHHHhhCCccCceEeecCCCC---Ce-eeEechhhchhcccceeeccCCc-cc
Confidence 344453 3666666543 2344445566666676666644100 01 2222 233455556665555432 33
Q ss_pred cCC-hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccC
Q 044264 170 KLP-ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRG 212 (439)
Q Consensus 170 ~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~ 212 (439)
.++ ..+..+.+|+.+.+.... ...-...+..+.+|+.+.+..
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCT
T ss_pred eehhhhhhhhccccccccccee-eeecccceecccccccccccc
Confidence 333 234555666666664322 111122344555555555543
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.46 E-value=4.9e-06 Score=78.75 Aligned_cols=304 Identities=11% Similarity=0.074 Sum_probs=159.9
Q ss_pred ceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccc-cccc
Q 044264 75 NVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI-PKNI 152 (439)
Q Consensus 75 ~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~ 152 (439)
.++.+.+... ...+ ..+|.+|.+|+.+.+..+.. ..+...-...|..+..|+.+.+.. + +..+ ...+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p--~~l~~Ig~~aF~~c~~L~~i~~~~------~--~~~I~~~aF 133 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKP--SCVKKIGRQAFMFCSELTDIPILD------S--VTEIDSEAF 133 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCC--CCCCEECTTTTTTCTTCCBCGGGT------T--CSEECTTTT
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCC--CeeeEechhhchhcccceeeccCC------c--cceehhhhh
Confidence 3666666433 3333 45788899999999876420 112334455688888888887754 2 3333 3456
Q ss_pred ccccccceeecCCCCCccCC-hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
..+.+|+.+.+... +..++ ..+..+..|+.+.+..+ +..+....-...+|+.+.+..... ......+..+.+++.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCccc-ccccchhhhccccce
Confidence 78899999998654 44443 45678889999988764 333433222345788877754321 111234555566555
Q ss_pred ccceeecccc-------------ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCcc
Q 044264 232 VEKFVVGRGV-------------ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV 298 (439)
Q Consensus 232 L~l~~~~~~~-------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 298 (439)
.......... ...........+..+.+...- ...-...+..+.+|+.+.+...... .
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v---------~~i~~~aF~~c~~L~~i~lp~~~~~-I 279 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGV---------ARIETHAFDSCAYLASVKMPDSVVS-I 279 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTE---------EEECTTTTTTCSSCCEEECCTTCCE-E
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCCcc---------eEcccceeeecccccEEecccccce-e
Confidence 4432211100 000011112223333322110 0001234566777777777543322 1
Q ss_pred CCchhhcccCccEEeecCCCCCCcCCC--CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeecc
Q 044264 299 HPHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFW 376 (439)
Q Consensus 299 l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 376 (439)
....+..+++|+.+.+... ...++. +.+|.+|+.+.+..+ ++.++.. .+.++.+|+.+.|.
T Consensus 280 ~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~-------------aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG--ITQILDD-------------AFAGCEQLERIAIP 342 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTT-------------TTTTCTTCCEEEEC
T ss_pred cCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc--ccEehHh-------------HhhCCCCCCEEEEC
Confidence 1344567778887777532 233332 677788888877643 4555432 25567778887775
Q ss_pred CCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEc
Q 044264 377 DMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIW 428 (439)
Q Consensus 377 ~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~ 428 (439)
. .++.+.... -..+++|+++.+.+.... + ..+..+.+|+.+.|.
T Consensus 343 ~--sv~~I~~~a---F~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 343 S--SVTKIPESA---FSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVA 386 (394)
T ss_dssp T--TCCBCCGGG---GTTCTTCCEEEESSCHHH--H-HTCBCCCCC------
T ss_pred c--ccCEEhHhH---hhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeC
Confidence 3 244443221 134567777777765221 1 134456667766664
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=2.2e-08 Score=82.07 Aligned_cols=70 Identities=10% Similarity=0.107 Sum_probs=32.3
Q ss_pred CCCCcceeeccCCCCccccccCCCccc-ccCcccceeeecccccccCC-CCCCCCCCCccEEEEcCCcchhh
Q 044264 366 AFPKLKTIQFWDMYVLKEWDYGDTIKG-EIMPRLSSLCIARCPTLRAL-PDHLLQTTTLQKLEIWGCPNLQK 435 (439)
Q Consensus 366 ~l~~L~~L~l~~~~~l~~~~~~~~~~~-~~~p~L~~L~i~~c~~l~~l-~~~l~~~~~L~~L~i~~c~~l~~ 435 (439)
.+++|++|++++|..+++......... ...++|++|+|++|+.+++- -..+..+++|+.|+|++|+.++.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 455555555555555444332211100 01235666666666555431 01233456666666666655543
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.34 E-value=3.1e-08 Score=81.18 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=20.2
Q ss_pred CcceeeccCCCCccccccCCCcccccCcccceeeecccccccC
Q 044264 369 KLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRA 411 (439)
Q Consensus 369 ~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~ 411 (439)
+|++|+|++|+++++-.... ...+|+|++|++++|+.++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~---L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIA---LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHH---GGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHH---HhcCCCCCEEECCCCCCCCc
Confidence 45555555555554433221 12356666666666655543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=2.4e-07 Score=77.69 Aligned_cols=94 Identities=17% Similarity=0.148 Sum_probs=45.6
Q ss_pred hhhhhHhhhcCCceeEEeCCcc-ccccccccccccccccccccccceeecCCCCCc-----cCChhHhhccCCcEeecCC
Q 044264 115 TEVLPQLFDELTCLRALDFAMF-QMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-----KLPETLCELYNLQLLNVES 188 (439)
Q Consensus 115 ~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~ 188 (439)
...+...+...+.|+.|+|++| .+ +... ...+...+...++|++|+|++|.++ .+...+...+.|++|++++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i-~~~g-~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNI-PVPT-LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTC-CHHH-HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCC-CHHH-HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 3444455556666666666662 11 0000 1223334445556666666666654 2334444555666666666
Q ss_pred CCcccc----cchhhhhccccceeec
Q 044264 189 CQDLKE----LPQGFGKLINLMYLLN 210 (439)
Q Consensus 189 ~~~~~~----l~~~i~~l~~L~~L~l 210 (439)
|..... +...+...++|++|++
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 652211 2333444455555555
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.17 E-value=8.4e-05 Score=69.74 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=42.1
Q ss_pred CCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
..+++.+.+.. ....+ ..+|.+|.+|+.+.+..+ +...-...|..+ .|+.+.+.. + +..+...
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~------v~~Ig~~aF~~c-~l~~i~~~~------~--l~~I~~~ 108 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST------VTSIGDGAFADT-KLQSYTGME------R--VKKFGDY 108 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT------CCEECTTTTTTC-CCCEEEECT------T--CCEECTT
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc------ceEechhhhcCC-CCceEECCc------e--eeEeccc
Confidence 45677776643 23333 346777888888888654 234444556666 455554432 1 3333333
Q ss_pred cccccccceeecCCC
Q 044264 152 IEKLVHLRYLNLSRL 166 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~ 166 (439)
.....+|+.+.+..+
T Consensus 109 aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 109 VFQGTDLDDFEFPGA 123 (379)
T ss_dssp TTTTCCCSEEECCTT
T ss_pred eeccCCcccccCCCc
Confidence 222336777776543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.08 E-value=5.7e-06 Score=69.20 Aligned_cols=117 Identities=13% Similarity=0.005 Sum_probs=83.8
Q ss_pred ccCCCCCeeEEEecCC-CCChhhHhhhhhHhhhcCCceeEEeCCccccccccccc----cccccccccccccceeecCCC
Q 044264 92 SFCSVKRLRSLLIDDN-GDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFI----KEIPKNIEKLVHLRYLNLSRL 166 (439)
Q Consensus 92 ~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~l~~L~~L~L~~~ 166 (439)
.+...+.|++|++++| ..... -...+...+...+.|++|+|++ |.+. ..+...+...+.|++|+|++|
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~-g~~~l~~~L~~~~~L~~L~Ls~------n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVP-TLKACAEALKTNTYVKKFSIVG------TRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHH-HHHHHHHHHTTCCSCCEEECTT------SCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHhcCCCCCEEEecCCCCCCHH-HHHHHHHHHHhCCCcCEEECcC------CCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4567889999999998 63211 1123455677789999999999 5532 234455666788999999999
Q ss_pred CCcc-----CChhHhhccCCcEeec--CCCCcccc----cchhhhhccccceeeccCccc
Q 044264 167 KIEK-----LPETLCELYNLQLLNV--ESCQDLKE----LPQGFGKLINLMYLLNRGTES 215 (439)
Q Consensus 167 ~~~~-----lp~~i~~l~~L~~L~l--~~~~~~~~----l~~~i~~l~~L~~L~l~~~~~ 215 (439)
.++. +...+...+.|++|++ ++|..... +...+...++|++|++++|..
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 9773 5667788889999999 77773322 344556678899999988764
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.06 E-value=7.6e-05 Score=70.04 Aligned_cols=261 Identities=11% Similarity=0.106 Sum_probs=130.9
Q ss_pred ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc-cccccccccceeecCCCCCcc
Q 044264 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEK 170 (439)
Q Consensus 92 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~ 170 (439)
.+....+++.+.+... +..+-...|..|.+|+.+.+.. + +..+. ..|..+ .|+.+.+..+ ++.
T Consensus 41 ~~~~~~~i~~v~ip~~------vt~Ig~~aF~~C~~L~~I~lp~------~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~ 104 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG------ITSIGEANFNSCYNMTKVTVAS------T--VTSIGDGAFADT-KLQSYTGMER-VKK 104 (379)
T ss_dssp TGGGGGGCSEEEECTT------EEEECTTTTTTCTTCCEEEECT------T--CCEECTTTTTTC-CCCEEEECTT-CCE
T ss_pred ccccccCCEEEEeCCC------ccChHHHHhhCCCCCCEEEeCC------c--ceEechhhhcCC-CCceEECCce-eeE
Confidence 3455678999998764 4556667799999999999965 3 33343 345555 5666666432 555
Q ss_pred CChhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccC-CcccccCcccccccceeecc---------
Q 044264 171 LPETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYL-PAGIERLTSLRRVEKFVVGR--------- 239 (439)
Q Consensus 171 lp~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~--------- 239 (439)
+....-...+|+.+.+..+. ..+.. .+..+ +|+.+.+...- ..+ ...+..+.+++.+.+.....
T Consensus 105 I~~~aF~~~~L~~i~lp~~~--~~i~~~~F~~~-~l~~~~~~~~v--~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~ 179 (379)
T 4h09_A 105 FGDYVFQGTDLDDFEFPGAT--TEIGNYIFYNS-SVKRIVIPKSV--TTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL 179 (379)
T ss_dssp ECTTTTTTCCCSEEECCTTC--CEECTTTTTTC-CCCEEEECTTC--CEECSCTTTTCTTCCEEEECTTCSSEEEETTEE
T ss_pred eccceeccCCcccccCCCcc--ccccccccccc-eeeeeecccee--eccccchhcccccccccccccccceeeccccee
Confidence 54432233478888886542 22222 22222 34433332211 111 11223333333332211100
Q ss_pred --------------------------ccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeec
Q 044264 240 --------------------------GVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQY 293 (439)
Q Consensus 240 --------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 293 (439)
.......+..+.+|+.+.+..+.. ......+..+.+|+.+.+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~---------~i~~~~f~~~~~L~~i~lp~~ 250 (379)
T 4h09_A 180 YNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVT---------TLGDGAFYGMKALDEIAIPKN 250 (379)
T ss_dssp EETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCC---------EECTTTTTTCSSCCEEEECTT
T ss_pred cccccceeccccccccccccccccceeEEeecccccccccceeeecccee---------EEccccccCCccceEEEcCCC
Confidence 001112233444555554433210 001123455667777777543
Q ss_pred cCCccCCchhhcccCccEEeecCCCCCCcCC--CCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcc
Q 044264 294 RGNNVHPHWMMSLTDLRILTLSHCINCEHLP--PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLK 371 (439)
Q Consensus 294 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 371 (439)
...+....+..+.+|+.+.+... ...++ .+..|++|+.+.+.++. ++.++.. .+..+.+|+
T Consensus 251 -v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~-------------aF~~c~~L~ 313 (379)
T 4h09_A 251 -VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPR-------------VFMDCVKLS 313 (379)
T ss_dssp -CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT-CCEECTT-------------TTTTCTTCC
T ss_pred -ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccc-cceehhh-------------hhcCCCCCC
Confidence 22221344556777777777543 22233 26777788888776554 5555432 255677788
Q ss_pred eeeccCCCCccccccCCCcccccCcccceeeec
Q 044264 372 TIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIA 404 (439)
Q Consensus 372 ~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~ 404 (439)
.+.|.+ +++.+..... ..+.+|+++.+.
T Consensus 314 ~i~lp~--~l~~I~~~aF---~~C~~L~~i~ip 341 (379)
T 4h09_A 314 SVTLPT--ALKTIQVYAF---KNCKALSTISYP 341 (379)
T ss_dssp EEECCT--TCCEECTTTT---TTCTTCCCCCCC
T ss_pred EEEcCc--cccEEHHHHh---hCCCCCCEEEEC
Confidence 887753 2444432211 234566666664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=1.1e-05 Score=71.25 Aligned_cols=79 Identities=25% Similarity=0.291 Sum_probs=44.5
Q ss_pred cccccceeecCCCCCccC---ChhHhhccCCcEeecCCCCcccccchhhhhcc--ccceeeccCccccccCCc-------
Q 044264 154 KLVHLRYLNLSRLKIEKL---PETLCELYNLQLLNVESCQDLKELPQGFGKLI--NLMYLLNRGTESLRYLPA------- 221 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~--~L~~L~l~~~~~~~~~~~------- 221 (439)
.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|. +..+ ..+..+. +|++|++.+|+....+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456666666666665533 3455566666666666665 4333 2234444 666666666665444431
Q ss_pred ccccCcccccccc
Q 044264 222 GIERLTSLRRVEK 234 (439)
Q Consensus 222 ~~~~l~~L~~L~l 234 (439)
.+..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2456666666653
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=1.5e-05 Score=70.35 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=28.6
Q ss_pred hccCCcEeecCCCCccc--ccchhhhhccccceeeccCccccccCCcccccCc--ccccccceeeccc
Q 044264 177 ELYNLQLLNVESCQDLK--ELPQGFGKLINLMYLLNRGTESLRYLPAGIERLT--SLRRVEKFVVGRG 240 (439)
Q Consensus 177 ~l~~L~~L~l~~~~~~~--~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~ 240 (439)
++++|+.|+|++|.... .+|..+..+++|+.|+|++|.... + ..+..+. +|++|.+.+|...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCc
Confidence 45555555555555211 223344455555555555554322 1 1222222 5555555555443
No 161
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.84 E-value=0.00063 Score=67.13 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=42.1
Q ss_pred CcchHHHHHHHHHHHHhCCCCcceecCCCCCceeeeecHHHHHHHHHhccCce
Q 044264 4 NKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNEC 56 (439)
Q Consensus 4 ~~~~~~~~~~~~~~Lv~~sl~~~~~~~~~~~~~~~~~hd~~~d~~~~~~~~~~ 56 (439)
+.+++++++ ||++|+++||+++...+ ....|+|||+++++|+.++.+++
T Consensus 424 ~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 424 EQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHH
Confidence 667899999 99999999999987653 45678999999999999987654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.06 E-value=0.0055 Score=50.95 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=50.7
Q ss_pred HhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCc-----cCChhHhhccCCcEeecCC
Q 044264 114 LTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-----KLPETLCELYNLQLLNVES 188 (439)
Q Consensus 114 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~ 188 (439)
+...+......-+.|+.|+|+++..++... ...+...+..-..|+.|+|++|.++ .+...+..-..|++|+|+.
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~g-a~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKER-IRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHH-HHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHH-HHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 344444555556667777776521111111 1223444555566777777777765 3445555566677777777
Q ss_pred CCcccc----cchhhhhccccceeeccC
Q 044264 189 CQDLKE----LPQGFGKLINLMYLLNRG 212 (439)
Q Consensus 189 ~~~~~~----l~~~i~~l~~L~~L~l~~ 212 (439)
|..... +...+..-+.|++|++++
T Consensus 108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 108 NFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 662211 222333344566666654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.73 E-value=0.02 Score=47.58 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=75.6
Q ss_pred CCCCCeeEEEecCC-CCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCc---
Q 044264 94 CSVKRLRSLLIDDN-GDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE--- 169 (439)
Q Consensus 94 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~--- 169 (439)
.+-+.|+.|++.++ .... .-...+.+.+..-+.|+.|+|++|++-. .. ...+...+..-+.|++|+|++|.++
T Consensus 38 ~~n~~L~~L~L~~nn~igd-~ga~~la~aL~~N~~L~~L~L~~n~igd-~g-a~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSK-ERIRSLIEAACNSKHIEKFSLANTAISD-SE-ARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCH-HHHHHHHHHHTTCSCCCEEECTTSCCBH-HH-HTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred hcCCCccEEECCCCCCCCH-HHHHHHHHHHhhCCCcCEEEccCCCCCh-HH-HHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 45678999999875 4211 1112345567777889999999933210 00 2234555666788999999999976
Q ss_pred --cCChhHhhccCCcEeecCCCCc--cc-----ccchhhhhccccceeeccCcc
Q 044264 170 --KLPETLCELYNLQLLNVESCQD--LK-----ELPQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 170 --~lp~~i~~l~~L~~L~l~~~~~--~~-----~l~~~i~~l~~L~~L~l~~~~ 214 (439)
.+...+..-..|+.|+++++.. +. .+...+..-+.|+.|++..+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4455666667899999986531 22 133345566788888886554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.30 E-value=0.051 Score=41.90 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=23.1
Q ss_pred cccceeecCCCCCccCCh-hHhhccCCcEeecCCCC
Q 044264 156 VHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQ 190 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 190 (439)
.+|++|+|++|.++.+|. .+..+++|+.|+|.+|.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 356777777777776664 34566677777777665
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.81 E-value=0.1 Score=40.09 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=39.3
Q ss_pred eeecCCCCCc--cCChhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccc
Q 044264 160 YLNLSRLKIE--KLPETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTES 215 (439)
Q Consensus 160 ~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~ 215 (439)
+++.++..++ .+|..+. .+|++|+|++|. +..+|. .+..+++|+.|+|.+|+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 6677777777 7775432 468888888888 666765 467788888888888864
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=89.15 E-value=0.36 Score=52.36 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCCcceecCCCCCceeeeecHHHHHHHHHhccCc
Q 044264 8 DVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNE 55 (439)
Q Consensus 8 ~~~~~~~~~~Lv~~sl~~~~~~~~~~~~~~~~~hd~~~d~~~~~~~~~ 55 (439)
++.++++|++|+++||++... +++...|+|||+++++++..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 567899999999999998654 345567899999999999887654
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=72.92 E-value=2.5 Score=41.57 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCCCcceecCCCCCceeeeecHHHHHHHHHhc
Q 044264 9 VIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLS 52 (439)
Q Consensus 9 ~~~~~~~~~Lv~~sl~~~~~~~~~~~~~~~~~hd~~~d~~~~~~ 52 (439)
+.++.++++|+++||++... ++....|+||++++++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 35788999999999998544 234557899999999998763
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=65.61 E-value=4.3 Score=42.71 Aligned_cols=35 Identities=6% Similarity=-0.006 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCCCcceecCCCCCceeeeecHHHHHHH
Q 044264 9 VIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFA 48 (439)
Q Consensus 9 ~~~~~~~~~Lv~~sl~~~~~~~~~~~~~~~~~hd~~~d~~ 48 (439)
+.++.+|++|+++||++.. +....|+|||++++++
T Consensus 402 edAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 4589999999999999973 2335689999999865
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.85 E-value=87 Score=22.14 Aligned_cols=39 Identities=18% Similarity=0.088 Sum_probs=19.3
Q ss_pred chhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeecc
Q 044264 301 HWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYS 339 (439)
Q Consensus 301 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 339 (439)
..|.+|.+|+.+.|-.....-.-..+.+|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 344456666666665432111112255666666666644
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.97 E-value=20 Score=25.57 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=25.8
Q ss_pred cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCc
Q 044264 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAM 135 (439)
Q Consensus 91 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 135 (439)
..|..|..|+.+.+..+ +...-...|..|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~------v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN------IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT------SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc------hheEcHHHHhccCCccEEEEcC
Confidence 35667777777777765 2444455577777777777765
Done!