BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044265
         (517 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
          Length = 639

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 179/468 (38%), Gaps = 68/468 (14%)

Query: 85  MILTDTWCSSGQILADGTVLQTGGDL-------DGYKKI-------RKFSPCEANGLCDW 130
           + LT +W  S  I++D TV  T  D+       DG  +I        K +    +    W
Sbjct: 201 ITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW 260

Query: 131 VELDDVELVNGRWYGTDQILPDGSVIILGGKGANTV-----EYYPPRNGAVSFPFLADVE 185
           +   D+++  G  Y +   + DG V  +GG G+  V     E Y P   + ++  L + +
Sbjct: 261 IPGPDMQVARG--YQSSATMSDGRVFTIGGSGSGGVFEKNGEVYSPS--SKTWTSLPNAK 316

Query: 186 DKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAML 245
              M           + H ++F   K  ++    +     Y     G  +  SAG     
Sbjct: 317 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY--YTSGSGDVKSAGK---- 370

Query: 246 ALEGDFATAVIVVCGGA-----------QFGA---FIQRSTDTPAHGSCGRIIATSADPT 291
             + +   A   +CG A            FG    +      T AH        TS +  
Sbjct: 371 -RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTV 429

Query: 292 WEMEDMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFM 351
           +    + F R     V+LP G   I  G + G   FE  S P   P +Y P Q     F 
Sbjct: 430 FASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FE-DSTPVFTPEIYVPEQDT---FY 484

Query: 352 TLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFSPEYLSSDRAN 411
             NP +I R+YHS + LLPDGRV   G         N         + F+P YL +   N
Sbjct: 485 KQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN-----HFDAQIFTPNYLYNSNGN 539

Query: 412 L--RPVIEEIP-ETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRLVKITV 468
           L  RP I     ++V+ G    +     +    ++         ATH+    QR + +T+
Sbjct: 540 LATRPKITRTSTQSVKVGGRITISTDSSISKASLIRYGT-----ATHTVNTDQRRIPLTL 594

Query: 469 TPSVPDANGRYRVGCTAPPNGAVAPPGYYMAFVVNQ-GVPSVARWVHL 515
           T      NG        P +  VA PGY+M FV+N  GVPSVA  + +
Sbjct: 595 T-----NNGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 637


>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
          Length = 639

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 178/468 (38%), Gaps = 68/468 (14%)

Query: 85  MILTDTWCSSGQILADGTVLQTGGDL-------DGYKKI-------RKFSPCEANGLCDW 130
           + LT +W  S  I++D TV  T  D+       DG  +I        K +    +    W
Sbjct: 201 ITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW 260

Query: 131 VELDDVELVNGRWYGTDQILPDGSVIILGGKGANTV-----EYYPPRNGAVSFPFLADVE 185
           +   D+++  G  Y +   + DG V  +GG  +  V     E Y P   + ++  L + +
Sbjct: 261 IPGPDMQVARG--YQSSATMSDGRVFTIGGSHSGGVFEKNGEVYSPS--SKTWTSLPNAK 316

Query: 186 DKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAML 245
              M           + H ++F   K  ++    +     Y     G  +  SAG     
Sbjct: 317 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY--YTSGSGDVKSAGK---- 370

Query: 246 ALEGDFATAVIVVCGGA-----------QFGA---FIQRSTDTPAHGSCGRIIATSADPT 291
             + +   A   +CG A            FG    +      T AH        TS +  
Sbjct: 371 -RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTV 429

Query: 292 WEMEDMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFM 351
           +    + F R     V+LP G   I  G + G   FE  S P   P +Y P Q     F 
Sbjct: 430 FASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FE-DSTPVFTPEIYVPEQDT---FY 484

Query: 352 TLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFSPEYLSSDRAN 411
             NP +I R+YHS + LLPDGRV   G         N         + F+P YL +   N
Sbjct: 485 KQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN-----HFDAQIFTPNYLYNSNGN 539

Query: 412 L--RPVIEEIP-ETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRLVKITV 468
           L  RP I     ++V+ G    +     +    ++         ATH+    QR + +T+
Sbjct: 540 LATRPKITRTSTQSVKVGGRITISTDSSISKASLIRYGT-----ATHTVNTDQRRIPLTL 594

Query: 469 TPSVPDANGRYRVGCTAPPNGAVAPPGYYMAFVVNQ-GVPSVARWVHL 515
           T      NG        P +  VA PGY+M FV+N  GVPSVA  + +
Sbjct: 595 T-----NNGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 637


>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
           Evolution
          Length = 639

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 181/466 (38%), Gaps = 64/466 (13%)

Query: 85  MILTDTWCSSGQILADGTVLQTGGDL-------DGYKKI-------RKFSPCEANGLCDW 130
           + LT +W  S  I++D TV  T  D+       DG  +I        K +    +    W
Sbjct: 201 ITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW 260

Query: 131 VELDDVELVNGRWYGTDQILPDGSVIILGGKGANTV-----EYYPPR--------NGAVS 177
           +   D+++  G  Y +   + DG V  +GG  +  V     E Y P         N  V+
Sbjct: 261 IPGPDMQVARG--YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 318

Query: 178 FPFLADVEDKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETN----KIAREYPPLDGGP 233
               AD +     + + ++     G +F      A+ + Y +     K A +     G  
Sbjct: 319 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA 378

Query: 234 RNYPSAGSSAMLALEGDFATAVIVVCGGAQFGAFIQRSTDTPAHGSCGRIIATSADPTWE 293
            +  S  +    A++G      I+  GG+    +      T AH        TS +  + 
Sbjct: 379 PDAMSGNAVMYDAVKGK-----ILTFGGSP--DYQDSDATTNAHIITLGEPGTSPNTVFA 431

Query: 294 MEDMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFMTL 353
              + F R     V+LP G   I  G + G   FE  S P   P +Y P Q     F   
Sbjct: 432 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FE-DSTPVFTPEIYVPEQDT---FYKQ 486

Query: 354 NPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFSPEYLSSDRANL- 412
           NP +I R+YHS + LLPDGRV   G         N         + F+P YL +   NL 
Sbjct: 487 NPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN-----HFDAQIFTPNYLYNSNGNLA 541

Query: 413 -RPVIEEIP-ETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRLVKITVTP 470
            RP I     ++V+ G    +     +    ++         ATH+    QR + +T+T 
Sbjct: 542 TRPKITRTSTQSVKVGGRITISTDSSISKASLIRYGT-----ATHTVNTDQRRIPLTLT- 595

Query: 471 SVPDANGRYRVGCTAPPNGAVAPPGYYMAFVVNQ-GVPSVARWVHL 515
                NG        P +  VA PGY+M FV+N  GVPSVA  + +
Sbjct: 596 ----NNGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 637


>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
           Azide
 pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
           Structure Of Galactose Oxidase
 pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
           Structure Of Galactose Oxidase
 pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
           Structure Of Galactose Oxidase
 pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
           Pastoris.
 pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
 pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
          Length = 639

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 178/468 (38%), Gaps = 68/468 (14%)

Query: 85  MILTDTWCSSGQILADGTVLQTGGDL-------DGYKKI-------RKFSPCEANGLCDW 130
           + LT +W  S  I++D TV  T  D+       DG  +I        K +    +    W
Sbjct: 201 ITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW 260

Query: 131 VELDDVELVNGRWYGTDQILPDGSVIILGGKGANTV-----EYYPPRNGAVSFPFLADVE 185
           +   D+++  G  Y +   + DG V  +GG  +  V     E Y P   + ++  L + +
Sbjct: 261 IPGPDMQVARG--YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS--SKTWTSLPNAK 316

Query: 186 DKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAML 245
              M           + H ++F   K  ++    +     Y     G  +  SAG     
Sbjct: 317 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY--YTSGSGDVKSAGK---- 370

Query: 246 ALEGDFATAVIVVCGGA-----------QFGA---FIQRSTDTPAHGSCGRIIATSADPT 291
             + +   A   +CG A            FG    +      T AH        TS +  
Sbjct: 371 -RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTV 429

Query: 292 WEMEDMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFM 351
           +    + F R     V+LP G   I  G + G   FE  S P   P +Y P Q     F 
Sbjct: 430 FASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FE-DSTPVFTPEIYVPEQDT---FY 484

Query: 352 TLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFSPEYLSSDRAN 411
             NP +I R+YHS + LLPDGRV   G         N         + F+P YL +   N
Sbjct: 485 KQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN-----HFDAQIFTPNYLYNSNGN 539

Query: 412 L--RPVIEEIP-ETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRLVKITV 468
           L  RP I     ++V+ G    +     +    ++         ATH+    QR + +T+
Sbjct: 540 LATRPKITRTSTQSVKVGGRITISTDSSISKASLIRYGT-----ATHTVNTDQRRIPLTL 594

Query: 469 TPSVPDANGRYRVGCTAPPNGAVAPPGYYMAFVVNQ-GVPSVARWVHL 515
           T      NG        P +  VA PGY+M FV+N  GVPSVA  + +
Sbjct: 595 T-----NNGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 637


>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
          Length = 656

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 178/468 (38%), Gaps = 68/468 (14%)

Query: 85  MILTDTWCSSGQILADGTVLQTGGDL-------DGYKKI-------RKFSPCEANGLCDW 130
           + LT +W  S  I++D TV  T  D+       DG  +I        K +    +    W
Sbjct: 218 ITLTSSWDPSTGIVSDRTVTVTKHDMFXPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW 277

Query: 131 VELDDVELVNGRWYGTDQILPDGSVIILGGKGANTV-----EYYPPRNGAVSFPFLADVE 185
           +   D+++  G  Y +   + DG V  +GG  +  V     E Y P   + ++  L + +
Sbjct: 278 IPGPDMQVARG--YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS--SKTWTSLPNAK 333

Query: 186 DKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAML 245
              M           + H ++F   K  ++    +     Y     G  +  SAG     
Sbjct: 334 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY--YTSGSGDVKSAGKR--- 388

Query: 246 ALEGDFATAVIVVCGGA-----------QFGA---FIQRSTDTPAHGSCGRIIATSADPT 291
             + +   A   +CG A            FG    +      T AH        TS +  
Sbjct: 389 --QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTV 446

Query: 292 WEMEDMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFM 351
           +    + F R     V+LP G   I  G + G   FE  S P   P +Y P Q     F 
Sbjct: 447 FASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FE-DSTPVFTPEIYVPEQDT---FY 501

Query: 352 TLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFSPEYLSSDRAN 411
             NP +I R+YHS + LLPDGRV   G         N         + F+P YL +   N
Sbjct: 502 KQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN-----HFDAQIFTPNYLYNSNGN 556

Query: 412 L--RPVIEEIP-ETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRLVKITV 468
           L  RP I     ++V+ G    +     +    ++         ATH+    QR + +T+
Sbjct: 557 LATRPKITRTSTQSVKVGGRITISTDSSISKASLIRYGT-----ATHTVNTDQRRIPLTL 611

Query: 469 TPSVPDANGRYRVGCTAPPNGAVAPPGYYMAFVVNQ-GVPSVARWVHL 515
           T      NG        P +  VA PGY+M FV+N  GVPSVA  + +
Sbjct: 612 T-----NNGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 654


>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
          Length = 639

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 178/468 (38%), Gaps = 68/468 (14%)

Query: 85  MILTDTWCSSGQILADGTVLQTGGDL-------DGYKKI-------RKFSPCEANGLCDW 130
           + LT +W  S  I++D TV  T  D+       DG  +I        K +    +    W
Sbjct: 201 ITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW 260

Query: 131 VELDDVELVNGRWYGTDQILPDGSVIILGGKGANTV-----EYYPPRNGAVSFPFLADVE 185
           +   D+++  G  Y +   + DG V  +GG  +  V     E Y P   + ++  L + +
Sbjct: 261 IPGPDMQVARG--YQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPS--SKTWTSLPNAK 316

Query: 186 DKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGGPRNYPSAGSSAML 245
              M           + H ++F   K  ++    +     Y     G  +  SAG     
Sbjct: 317 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY--YTSGSGDVKSAGK---- 370

Query: 246 ALEGDFATAVIVVCGGA-----------QFGA---FIQRSTDTPAHGSCGRIIATSADPT 291
             + +   A   +CG A            FG    +      T AH        TS +  
Sbjct: 371 -RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTV 429

Query: 292 WEMEDMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPAGLRFM 351
           +    + F R     V+LP G   I  G + G   FE  S P   P +Y P Q     F 
Sbjct: 430 FASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FE-DSTPVFTPEIYVPEQDT---FY 484

Query: 352 TLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFSPEYLSSDRAN 411
             NP +I R+YHS + LLPDGRV   G         N         + F+P YL +   N
Sbjct: 485 KQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN-----HFDAQIFTPNYLYNSNGN 539

Query: 412 L--RPVIEEIP-ETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRLVKITV 468
           L  RP I     ++V+ G    +     +    ++         ATH+    QR + +T+
Sbjct: 540 LATRPKITRTSTQSVKVGGRITISTDSSISKASLIRYGT-----ATHTVNTDQRRIPLTL 594

Query: 469 TPSVPDANGRYRVGCTAPPNGAVAPPGYYMAFVVNQ-GVPSVARWVHL 515
           T      NG        P +  VA PGY+M FV+N  GVPSVA  + +
Sbjct: 595 T-----NNGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 637


>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
           Oxidase Obtained By Directed Evolution
          Length = 661

 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 178/473 (37%), Gaps = 78/473 (16%)

Query: 85  MILTDTWCSSGQILADGTVLQTGGDL-------DGYKKI-------RKFSPCEANGLCDW 130
           + LT +W  S  I++D TV  T  D+       DG  +I        K +    +    W
Sbjct: 223 ITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW 282

Query: 131 VELDDVELVNGRWYGTDQILPDGSVIILGGKGANTV-----EYYPPRNGAVSFPFLADVE 185
           +   D+++  G  Y +   + DG V  +GG  +  V     E Y P +   +    A V 
Sbjct: 283 IPGPDMQVARG--YQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSLPNAKVN 340

Query: 186 -----DKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGGPRNYPSAG 240
                DKQ   LY       + H ++F   K  ++    +     Y     G  +  SAG
Sbjct: 341 PMLTADKQ--GLYK-----SDNHAWLFGWKKGSVFQAGPSTAMNWY--YTSGSGDVKSAG 391

Query: 241 SSAMLALEGDFATAVIVVCGGA-----------QFGA---FIQRSTDTPAHGSCGRIIAT 286
                  + +   A   +CG A            FG    +      T AH        T
Sbjct: 392 KR-----QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYTDSDATTNAHIITLGEPGT 446

Query: 287 SADPTWEMEDMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPA 346
           S +  +    + F R     V+LP G   I  G + G   FE  S P   P +Y P Q  
Sbjct: 447 SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGII-FE-DSTPVFTPEIYVPEQDT 504

Query: 347 GLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFSPEYLS 406
              F   NP +I R YHS + LLPDGRV   G         N         + F+P YL 
Sbjct: 505 ---FYKQNPNSIVRAYHSISLLLPDGRVFNGGGGLCGDCTTN-----HFDAQIFTPNYLY 556

Query: 407 SDRANL--RPVIEEIP-ETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRL 463
               NL  RP I     ++V+ G    +     +    ++         ATH+    QR 
Sbjct: 557 DSNGNLATRPKITRTSTQSVKVGGRITISTDSSISKASLIRYGT-----ATHTVNTDQRR 611

Query: 464 VKITVTPSVPDANGRYRVGCTAPPNGAVAPPGYYMAFVVNQ-GVPSVARWVHL 515
           + +T+T      NG        P +  VA PGY+M FV+N  GVPSVA  + +
Sbjct: 612 IPLTLT-----NNGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 659


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,139,754
Number of Sequences: 62578
Number of extensions: 772773
Number of successful extensions: 1436
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1406
Number of HSP's gapped (non-prelim): 21
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)