BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044265
(517 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CS93|GAOA_GIBZA Galactose oxidase OS=Gibberella zeae GN=GAOA PE=1 SV=1
Length = 680
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 123/473 (26%), Positives = 180/473 (38%), Gaps = 78/473 (16%)
Query: 85 MILTDTWCSSGQILADGTVLQTGGDL-------DGYKKI-------RKFSPCEANGLCDW 130
+ LT +W S I++D TV T D+ DG +I K + + W
Sbjct: 242 ITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW 301
Query: 131 VELDDVELVNGRWYGTDQILPDGSVIILGGKGANTV-----EYYPPRNGAVSFPFLADVE 185
+ D+++ G Y + + DG V +GG + V E Y P + + A V
Sbjct: 302 IPGPDMQVARG--YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 359
Query: 186 -----DKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGGPRNYPSAG 240
DKQ LY + H ++F K ++ + Y G + SAG
Sbjct: 360 PMLTADKQ--GLY-----RSDNHAWLFGWKKGSVFQAGPSTAMNWY--YTSGSGDVKSAG 410
Query: 241 SSAMLALEGDFATAVIVVCGGA-----------QFGA---FIQRSTDTPAHGSCGRIIAT 286
+ + A +CG A FG + T AH T
Sbjct: 411 KR-----QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT 465
Query: 287 SADPTWEMEDMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPA 346
S + + + F R V+LP G I G + G FE S P P +Y P Q
Sbjct: 466 SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FE-DSTPVFTPEIYVPEQDT 523
Query: 347 GLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFSPEYLS 406
F NP +I R+YHS + LLPDGRV G N + F+P YL
Sbjct: 524 ---FYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN-----HFDAQIFTPNYLY 575
Query: 407 SDRANL--RPVIEEIP-ETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRL 463
+ NL RP I ++V+ G + + ++ ATH+ QR
Sbjct: 576 NSNGNLATRPKITRTSTQSVKVGGRITISTDSSISKASLIRYGT-----ATHTVNTDQRR 630
Query: 464 VKITVTPSVPDANGRYRVGCTAPPNGAVAPPGYYMAFVVNQ-GVPSVARWVHL 515
+ +T+T NG P + VA PGY+M FV+N GVPSVA + +
Sbjct: 631 IPLTLT-----NNGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 678
>sp|I1S2N3|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=GAOA PE=3 SV=1
Length = 680
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 123/473 (26%), Positives = 180/473 (38%), Gaps = 78/473 (16%)
Query: 85 MILTDTWCSSGQILADGTVLQTGGDL-------DGYKKI-------RKFSPCEANGLCDW 130
+ LT +W S I++D TV T D+ DG +I K + + W
Sbjct: 242 ITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW 301
Query: 131 VELDDVELVNGRWYGTDQILPDGSVIILGGKGANTV-----EYYPPRNGAVSFPFLADVE 185
+ D+++ G Y + + DG V +GG + V E Y P + + A V
Sbjct: 302 IPGPDMQVARG--YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 359
Query: 186 -----DKQMDNLYPYVHLLPNGHLFIFANDKAVMYDYETNKIAREYPPLDGGPRNYPSAG 240
DKQ LY + H ++F K ++ + Y G + SAG
Sbjct: 360 PMLTADKQ--GLY-----RSDNHAWLFGWKKGSVFQAGPSTAMNWY--YTSGSGDVKSAG 410
Query: 241 SSAMLALEGDFATAVIVVCGGA-----------QFGA---FIQRSTDTPAHGSCGRIIAT 286
+ + A +CG A FG + T AH T
Sbjct: 411 KR-----QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT 465
Query: 287 SADPTWEMEDMPFGRIMGDMVMLPTGDVLIINGAQAGTQGFEMASNPCLFPVLYRPTQPA 346
S + + + F R V+LP G I G + G FE S P P +Y P Q
Sbjct: 466 SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-FE-DSTPVFTPEIYVPEQDT 523
Query: 347 GLRFMTLNPGTIPRMYHSTANLLPDGRVLIAGSNPHYFYKFNAEFPTELRIEAFSPEYLS 406
F NP +I R+YHS + LLPDGRV G N + F+P YL
Sbjct: 524 ---FYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN-----HFDAQIFTPNYLY 575
Query: 407 SDRANL--RPVIEEIP-ETVRYGEAFDVFVTVPLPVVGILEVNLGNAPFATHSFQQGQRL 463
+ NL RP I ++V+ G + + ++ ATH+ QR
Sbjct: 576 NSNGNLATRPKITRTSTQSVKVGGRITISTDSSITKASLIRYGT-----ATHTVNTDQRR 630
Query: 464 VKITVTPSVPDANGRYRVGCTAPPNGAVAPPGYYMAFVVNQ-GVPSVARWVHL 515
+ +T+T NG P + VA PGY+M FV+N GVPSVA + +
Sbjct: 631 IPLTLT-----NNGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 678
>sp|Q2JSF0|RSMH_SYNJA Ribosomal RNA small subunit methyltransferase H OS=Synechococcus
sp. (strain JA-3-3Ab) GN=rsmH PE=3 SV=1
Length = 309
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 381 PHYFYKFNAEFPTELRIEAFSPEYLSSDRANLRPVIEEIPETVRYGE 427
P + F AE P ++R++ + + ++D N RPV + I VRYGE
Sbjct: 129 PERGFSFRAEGPLDMRMDPTADQETAADWVNRRPVEDLIDIFVRYGE 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,870,710
Number of Sequences: 539616
Number of extensions: 9717402
Number of successful extensions: 17243
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17233
Number of HSP's gapped (non-prelim): 8
length of query: 517
length of database: 191,569,459
effective HSP length: 122
effective length of query: 395
effective length of database: 125,736,307
effective search space: 49665841265
effective search space used: 49665841265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)